HHsearch alignment for GI: 254780277 and conserved domain: PRK07246
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=98.91 E-value=3.9e-09 Score=85.20 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=105.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC----CCEECCCCCCCCC---CCCCC-CCCHHHHHHHHHHHHC
Q ss_conf 68523233222433110012442010257766544345----5023137443334---56500-1788999974444202
Q gi|254780277|r 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV----ETIFIDLSVHTSQ---DSTGK-NTLTKEILSYLKKFFE 458 (976)
Q Consensus 387 ~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~----~~~yip~~~~~~~---d~~~~-~~~~~evl~~L~~lle 458 (976)
T Consensus 7 ~~~~vvDlETTG~~~~-~~Iiqi~~v~~~~~~i~~~f~t~vnP~~~ip~~I~~LTgI~~~~v~~ap~f~~v~~~~~~~l~ 85 (820)
T PRK07246 7 RKYAVVDLEATGAGPN-ASIIQVGIVIIQGNKIIDSYETDVNPHESLDEHIVHLTGITDKQLAQAPDFSQVAHHIYQLIE 85 (820)
T ss_pred CCEEEEEEECCCCCCC-CCEEEEEEEEEECCEEEEEEEECCCCCCCCCHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 7189999887898999-877999999999999989987311889979978886469898998529998999999999967
Q ss_pred CCCCHHHHCCCCHHHHHHHH----CCCCCCC-CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 22100110032123788986----1886664-210023455431687667724667762244422335654322210000
Q gi|254780277|r 459 NEHFLKIGHNIKYDKLVLHR----YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533 (976)
Q Consensus 459 ~~~i~kIgHN~KfD~~~L~~----~GI~l~~-i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~~~i 533 (976)
T Consensus 86 ~~--~~VaHNv~FD~~fl~~~~~~~g~~~~~~~~DTv~La~i~~P~~~~y~L~~L~~~-l~~~~~--------------- 147 (820)
T PRK07246 86 DC--IFVAHNVKFDANLLAEALFLEGYELRTPRVDTVELAQVFFPRLEKYSLSHLSRQ-LNIDLA--------------- 147 (820)
T ss_pred CC--EEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHH-CCCCCC---------------
T ss_conf 98--599837201699999999975898899826099999997798788888999997-399999---------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 001233332221111124567763222100
Q gi|254780277|r 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 (976)
Q Consensus 534 ~~e~~~~Yaa~Da~~t~~L~~~l~~~L~~~ 563 (976)
T Consensus 148 ---~-~HrA~~Da~ata~l~~~l~~~l~~l 173 (820)
T PRK07246 148 ---E-AHTAIADARATAILFLRLLQKIESL 173 (820)
T ss_pred ---C-CCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ---8-8761889999999999999998619