HHsearch alignment for GI: 254780277 and conserved domain: PRK08074

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=98.97  E-value=2e-09  Score=87.34  Aligned_cols=154  Identities=17%  Similarity=0.174  Sum_probs=106.3

Q ss_pred             CCCCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCC----CCEECCCCCCCCC---CCCCCCC-CHHHHHHHHHHHH
Q ss_conf             68523233222433110-012442010257766544345----5023137443334---5650017-8899997444420
Q gi|254780277|r  387 IGSASFKIITDTMDAFH-SKPIAIAISTLDQKDDTSFKV----ETIFIDLSVHTSQ---DSTGKNT-LTKEILSYLKKFF  457 (976)
Q Consensus       387 ~~~ia~DtETt~ld~~~-~~ivGisls~~~~~~~~~~~~----~~~yip~~~~~~~---d~~~~~~-~~~evl~~L~~ll  457 (976)
T Consensus         3 ~~~~vvDlETTG~~~~~~d~IIqig~v~i~~~~i~~~f~t~vnP~~~iP~~I~~LTgI~~~~v~~AP~f~eva~~i~~~l   82 (932)
T PRK08074          3 KRFVVVDLETTGNSPKKGDKIIQIAAVVVEDGEILERFSTFVNPERPIPPFITELTGISEEMVKNAPLFEDVAPMIVELL   82 (932)
T ss_pred             CEEEEEEEECCCCCCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHH
T ss_conf             70899998888989777988999979999999998998532589998997788606989899805999899999999996


Q ss_pred             CCCCCHHHHCCCCHHHHHHHH----CCCC-CCC-CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCH
Q ss_conf             222100110032123788986----1886-664-2100234554316876677246677622444223356543222100
Q gi|254780277|r  458 ENEHFLKIGHNIKYDKLVLHR----YGIS-MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID  531 (976)
Q Consensus       458 e~~~i~kIgHN~KfD~~~L~~----~GI~-l~~-i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~~  531 (976)
T Consensus        83 ~~~--~~VaHNv~FD~~FL~~~l~~~G~~~~~~~~~DTveLa~i~~P~~~sy~L~~L~~~-l~i~~~-------------  146 (932)
T PRK08074         83 EGA--YFVAHNVHFDLNFLNEELERAGYTEIHCPKLDTVELARILLPTADSYKLSDLSEE-LELEHD-------------  146 (932)
T ss_pred             CCC--EEEECCHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHHHHCCCCCCCCHHHHHHH-CCCCCC-------------
T ss_conf             699--5994780540999999999739986668765199999997788788888999986-499999-------------


Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0000123333222111112456776322210
Q gi|254780277|r  532 KISDSQVQEHAIENSNVILQLWLLLRPKLIV  562 (976)
Q Consensus       532 ~i~~e~~~~Yaa~Da~~t~~L~~~l~~~L~~  562 (976)
T Consensus       147 ------~~HrA~sDa~aTa~l~~~l~~~l~~  171 (932)
T PRK08074        147 ------QPHRADSDAEVTAELFLQLLHKLER  171 (932)
T ss_pred             ------CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             ------9875178899999999999999983