HHsearch alignment for GI: 254780277 and conserved domain: PRK09146
>PRK09146 DNA polymerase III subunit epsilon; Validated.
Probab=98.65 E-value=9.6e-08 Score=75.06 Aligned_cols=153 Identities=11% Similarity=0.094 Sum_probs=90.7
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCC----------CCCCCCCCCCCCHHHHHHHH
Q ss_conf 98668523233222433110012442010257766544345502313744----------33345650017889999744
Q gi|254780277|r 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSV----------HTSQDSTGKNTLTKEILSYL 453 (976)
Q Consensus 384 L~~~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~----------~~~~d~~~~~~~~~evl~~L 453 (976)
T Consensus 44 l~d~~fvalD~ETTGLdp~~D~IiSIGaV~i~~~~I~l~~a~~~lV~p~~~i~~~s~~IHGIt~~~l~~ap~l~evl~~l 123 (239)
T PRK09146 44 LSEVPFVALDFETTGLDPEQDAIVSIGLVPFTLQRIRCRQARHWVVKPRRPLNEESVVIHGITHSDLQDAPDLERILDEL 123 (239)
T ss_pred CCCCCEEEEECCCCCCCCCCCCEEEEEEEEEECCEEEECCEEEEEECCCCCCCCCCEEECCCCHHHHHCCCCHHHHHHHH
T ss_conf 21087899964157888788854899899987888865341589988999787645110696989985699999999999
Q ss_pred HHHHCCCCCHHHHCCCCHHHHHHHH-----CCCCCCC-CCCHHHHHHHHCCC-------------CCCCCHHHHHHHHCC
Q ss_conf 4420222100110032123788986-----1886664-21002345543168-------------766772466776224
Q gi|254780277|r 454 KKFFENEHFLKIGHNIKYDKLVLHR-----YGISMRG-FEDIMLMSYVLDSG-------------RSSHDIASIAQKWLS 514 (976)
Q Consensus 454 ~~lle~~~i~kIgHN~KfD~~~L~~-----~GI~l~~-i~DTmlaayLLdp~-------------~~~~~L~~la~~yL~ 514 (976)
T Consensus 124 l~~l~g~--VLVaH~a~~D~~FL~~a~~~~~g~~l~~P~IDTl~Le~~~~~~~~~~~~~r~~~~~~~slrL~~~r~rYgL 201 (239)
T PRK09146 124 LEALAGK--VVVVHYRRIERDFLDQALRNRIGEGIEFPVIDTMEIEARIQRKQAGGLWNRLKGKKPESIRLADSRLRYGL 201 (239)
T ss_pred HHHHCCC--EEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCC
T ss_conf 9981899--89996839999999999999628898874644899999998854200444313589867638999998198
Q ss_pred CCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44223356543222100000012333322211111245677632
Q gi|254780277|r 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558 (976)
Q Consensus 515 ~~~~e~~~~~k~~~~~~~i~~e~~~~Yaa~Da~~t~~L~~~l~~ 558 (976)
T Consensus 202 -------------------P~-y~aH~AL~DAlATAELflAQi~ 225 (239)
T PRK09146 202 -------------------PA-YPPHHALTDAIATAELLQAQIA 225 (239)
T ss_pred -------------------CC-CCCCCCHHHHHHHHHHHHHHHH
T ss_conf -------------------98-8876719999999999999999