HHsearch alignment for GI: 254780277 and conserved domain: PRK09182
>PRK09182 DNA polymerase III subunit epsilon; Validated.
Probab=98.18 E-value=9.4e-06 Score=60.54 Aligned_cols=172 Identities=13% Similarity=0.186 Sum_probs=83.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECC---CCCCCCCC-CCCCEEC----CCCCCC-------CCCCCCCCCCHHHHHHHH
Q ss_conf 52323322243311001244201025---77665443-4550231----374433-------345650017889999744
Q gi|254780277|r 389 SASFKIITDTMDAFHSKPIAIAISTL---DQKDDTSF-KVETIFI----DLSVHT-------SQDSTGKNTLTKEILSYL 453 (976)
Q Consensus 389 ~ia~DtETt~ld~~~~~ivGisls~~---~~~~~~~~-~~~~~yi----p~~~~~-------~~d~~~~~~~~~evl~~L 453 (976)
T Consensus 39 g~~lD~ETTGl~~~~d~IIElg~v~f~~~~~G~i~~i~~~~~~~~dP~~pIp~~it~lTGItd~mV~Gq~id~~~V---- 114 (293)
T PRK09182 39 GVILDTETTGLDPRKDEIIEIGMVAFEYDDDGRIGDVVDTFGGLQQPSRPIPPEITRLTGITDEMVAGQTIDPAEV---- 114 (293)
T ss_pred EEEEECCCCCCCCCCCEEEEEEEEEEEECCCCCEEEEECCEECCCCCCCCCCHHHHHHCCCCHHHHCCCCCCHHHH----
T ss_conf 9999530578897787799976899998699858776432311038999899879875188889968882799999----
Q ss_pred HHHHCCCCCHHHHCCCCHHHHHHHHCCCCC--CCCCCHHHH-HHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 442022210011003212378898618866--642100234-55431687667724667762244422335654322210
Q gi|254780277|r 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISM--RGFEDIMLM-SYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530 (976)
Q Consensus 454 ~~lle~~~i~kIgHN~KfD~~~L~~~GI~l--~~i~DTmla-ayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~ 530 (976)
T Consensus 115 ~~~~~~ad-liiAHNA~FDR~F~E~~~p~f~~k~WaCS~~~IdW~~-~Gf~s~kLeyL~~~~G-~F~~------------ 179 (293)
T PRK09182 115 DALIAPAD-LIIAHNAGFDRPFLERFSPVFANKPWACSVSEIDWSA-RGFEGTKLGYLAGQAG-FFHD------------ 179 (293)
T ss_pred HHHHCCCC-EEEECCCCCCHHHHHHHCCCCCCCCEEEECCCCCHHH-CCCCCCCHHHHHHHCC-CCCC------------
T ss_conf 99864498-9998177546778985095325875053163797032-2877415999998609-4545------------
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCC
Q ss_conf 0000012333322211111245677632221000134578860750123322101431005
Q gi|254780277|r 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 (976)
Q Consensus 531 ~~i~~e~~~~Yaa~Da~~t~~L~~~l~~~L~~~~l~~l~~~iE~Pl~~vLa~ME~~Gi~vD 591 (976)
T Consensus 180 --------aHRA~~Dc~All~LL~~~l~~s~~~~l~~Ll~~a~~~~~r----I~A~~aPfd 228 (293)
T PRK09182 180 --------GHRAVDDCQALLELLARPLPETGQPPLAELLEASRRPRMR----IWAENSPFE 228 (293)
T ss_pred --------CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCEEE----EEEECCCCH
T ss_conf --------6534889999999976778644554999999972788499----997079813