HHsearch alignment for GI: 254780277 and conserved domain: PRK13766
>PRK13766 Hef nuclease; Provisional.
Probab=97.28 E-value=0.00033 Score=49.30 Aligned_cols=74 Identities=9% Similarity=0.013 Sum_probs=33.4
Q ss_pred EEEEEECC-CCCHHHHCCHH----HHCCC----CCCCHHHHHHHHHHHHHHHHCCCC---EEEECCEEHHHHHHHHHHHH
Q ss_conf 99997274-88713240865----21667----987975886489999999970997---99568901665899999999
Q gi|254780277|r 61 FAVIFDYP-AVTFRNEIYPD----YKANR----PKIPEMLLPQLPLVRLATQAFGIP---AIEIQGFEADDIIATYTYIA 128 (976)
Q Consensus 61 ~~v~fD~~-~~tfR~~~~~~----YKa~R----~~~p~~l~~q~~~i~~~l~~~gi~---~~~~~~~EADDviatla~~~ 128 (976)
T Consensus 32 tiVvLPTG~GKT~IA~lvi~~~l~~~~gKilFLaPT~pLV~Qq~~~~~~~l---~i~~~~i~~ltG---~~~~~~r~~~w 105 (764)
T PRK13766 32 TLVVLPTGLGKTAIALLVIAERLQKYGGKVLILAPTKPLVEQHAEFFRKFL---NIDPEKIVVLTG---EISPEKRAALW 105 (764)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHC---CCCCCEEEEEEC---CCCHHHHHHHH
T ss_conf 899959986689999999999997489889998588889999999999970---999552899988---87827689986
Q ss_pred HHCCCCEEEECCCC
Q ss_conf 84899499986870
Q gi|254780277|r 129 EKEGFAVTIISTDK 142 (976)
Q Consensus 129 ~~~~~~v~i~s~Dk 142 (976)
T Consensus 106 --~~~~Viv~TPQv 117 (764)
T PRK13766 106 --EKAKVIVATPQV 117 (764)
T ss_pred --CCCCEEEECCHH
T ss_conf --079999999089