HHsearch alignment for GI: 254780277 and conserved domain: PTZ00217
>PTZ00217 flap endonuclease-1; Provisional.
Probab=99.86 E-value=3.6e-19 Score=158.38 Aligned_cols=264 Identities=23% Similarity=0.282 Sum_probs=182.2
Q ss_pred CEEEEEECCHHHHHHHHCCC------CCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHCCH
Q ss_conf 72899966269998874267------544689885500699999999999998485547987999972748871324086
Q gi|254780277|r 5 NHLFLVDGSSFIYRAFYATP------LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYP 78 (976)
Q Consensus 5 ~~~~liDg~~~~~ra~~a~p------~~~~~~~G~~t~ai~gf~~~l~~~i~~~~~~~~~~~~~v~fD~~~~tfR~~~~~ 78 (976)
T Consensus 28 GK~VAIDas~~LYqfl~air~~~~~~~l~-n~~G~~tshl~gl~~r~~~ll~~-----g-IkPVfVFDGkpp~~K~~tl~ 100 (394)
T PTZ00217 28 GRRIAIDASMALYQFIIAIRSSGQGSELT-NESGEVTSHLNGLFNRTIRLLEE-----G-IKPIYVFDGKPPELKSGELE 100 (394)
T ss_pred CCEEEEECHHHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHC-----C-CEEEEEECCCCCHHHHHHHH
T ss_conf 98899961499999999864442344210-46787029999999999999987-----9-97999978999435588999
Q ss_pred HHHCCCCCC------------CHHH-----------HHHHHHHHHHHHHCCCCEEEECCEEHHHHHHHHHHHHHHCCCCE
Q ss_conf 521667987------------9758-----------86489999999970997995689016658999999998489949
Q gi|254780277|r 79 DYKANRPKI------------PEML-----------LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135 (976)
Q Consensus 79 ~YKa~R~~~------------p~~l-----------~~q~~~i~~~l~~~gi~~~~~~~~EADDviatla~~~~~~~~~v 135 (976)
T Consensus 101 kRr~~R~eA~~~~~~a~e~gd~e~a~k~~~r~v~vT~e~~~~~k~LL~~mGIpyI~AP~-EAEaqcA~L~~~----g~vd 175 (394)
T PTZ00217 101 KRRQRREEAEAELEKAKEEGDDEQMKKQSKRTVRVTRKQNEEAKKLLRLMGIPVIEAPS-EAEAQCAELVKK----GKAW 175 (394)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECCC-HHHHHHHHHHHC----CCEE
T ss_conf 99999999999999998758999999987543538899999999999976997686580-599999999966----9657
Q ss_pred EEECCCCHHHEECCCCEEEEECC---CC---CEECHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 99868701212237975999667---88---3538999988848988787777875187435899877636024998984
Q gi|254780277|r 136 TIISTDKDLMQLVSPTTCLYDTV---KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ 209 (976)
Q Consensus 136 ~i~s~DkD~~Qlv~~~v~~~~~~---~~---~~~~~~~v~~~~gv~p~~~~d~~al~GD~sDnipGv~GiG~KtA~~ll~ 209 (976)
T Consensus 176 av~SeD~D~l~fG~p~vlr~l~~s~~~k~~~~~i~l~~il~~l~lt~eqfidlcIL~G--cDY~~~I~GIGpk~A~klIk 253 (394)
T PTZ00217 176 AVATEDMDALTFGTPVLLRNLNFSEAKKRPIVEIHLDKVLKGLGLSMDQFIDLCILCG--CDYCDTIEGIGPKTAYELIK 253 (394)
T ss_pred EEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHHHH
T ss_conf 9970442300037866887313466665544998899988774999999999999818--64468998748899999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHH-HHHHHHH-----
Q ss_conf 1367899986454200112232200-35789997655432035642247635521267676889986-5323368-----
Q gi|254780277|r 210 EYGNLENILINASRIKQKKRRENIL-EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF-LKALEFT----- 282 (976)
Q Consensus 210 ~~gsle~i~~~~d~i~~~k~~~~l~-~~~e~a~ls~~L~tL~~Dvpl~~~~~~l~~~~~d~~~l~~~-~~~lef~----- 282 (976)
T Consensus 254 ~~~sie~il~~~~~~k~-~~p~~~~~~~~r~~Fl-------~P~V~-~~~~~~l~w~~pd~e~l~~fL~~e~~Fse~Rv~ 324 (394)
T PTZ00217 254 KYGSIEEILEHLDGTKY-PVPENFPYKEARELFL-------NPKVT-PAEEIDIKWSEPDIEGLKKFLVEEKNFNEERVE 324 (394)
T ss_pred HHCCHHHHHHHHCCCCC-CCCCCCCHHHHHHHHC-------CCCCC-CCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHH
T ss_conf 95999999987412467-7998799799999962-------99888-976676508999989999997646697989999
Q ss_pred HHHHHHHHH
Q ss_conf 999876531
Q gi|254780277|r 283 KLINRVATT 291 (976)
Q Consensus 283 ~ll~rL~~~ 291 (976)
T Consensus 325 ~~~~~l~k~ 333 (394)
T PTZ00217 325 KGIERLRKA 333 (394)
T ss_pred HHHHHHHHH
T ss_conf 999999987