HHsearch alignment for GI: 254780277 and conserved domain: PTZ00217

>PTZ00217 flap endonuclease-1; Provisional.
Probab=99.86  E-value=3.6e-19  Score=158.38  Aligned_cols=264  Identities=23%  Similarity=0.282  Sum_probs=182.2

Q ss_pred             CEEEEEECCHHHHHHHHCCC------CCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHCCH
Q ss_conf             72899966269998874267------544689885500699999999999998485547987999972748871324086
Q gi|254780277|r    5 NHLFLVDGSSFIYRAFYATP------LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYP   78 (976)
Q Consensus         5 ~~~~liDg~~~~~ra~~a~p------~~~~~~~G~~t~ai~gf~~~l~~~i~~~~~~~~~~~~~v~fD~~~~tfR~~~~~   78 (976)
T Consensus        28 GK~VAIDas~~LYqfl~air~~~~~~~l~-n~~G~~tshl~gl~~r~~~ll~~-----g-IkPVfVFDGkpp~~K~~tl~  100 (394)
T PTZ00217         28 GRRIAIDASMALYQFIIAIRSSGQGSELT-NESGEVTSHLNGLFNRTIRLLEE-----G-IKPIYVFDGKPPELKSGELE  100 (394)
T ss_pred             CCEEEEECHHHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHC-----C-CEEEEEECCCCCHHHHHHHH
T ss_conf             98899961499999999864442344210-46787029999999999999987-----9-97999978999435588999


Q ss_pred             HHHCCCCCC------------CHHH-----------HHHHHHHHHHHHHCCCCEEEECCEEHHHHHHHHHHHHHHCCCCE
Q ss_conf             521667987------------9758-----------86489999999970997995689016658999999998489949
Q gi|254780277|r   79 DYKANRPKI------------PEML-----------LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV  135 (976)
Q Consensus        79 ~YKa~R~~~------------p~~l-----------~~q~~~i~~~l~~~gi~~~~~~~~EADDviatla~~~~~~~~~v  135 (976)
T Consensus       101 kRr~~R~eA~~~~~~a~e~gd~e~a~k~~~r~v~vT~e~~~~~k~LL~~mGIpyI~AP~-EAEaqcA~L~~~----g~vd  175 (394)
T PTZ00217        101 KRRQRREEAEAELEKAKEEGDDEQMKKQSKRTVRVTRKQNEEAKKLLRLMGIPVIEAPS-EAEAQCAELVKK----GKAW  175 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECCC-HHHHHHHHHHHC----CCEE
T ss_conf             99999999999999998758999999987543538899999999999976997686580-599999999966----9657


Q ss_pred             EEECCCCHHHEECCCCEEEEECC---CC---CEECHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             99868701212237975999667---88---3538999988848988787777875187435899877636024998984
Q gi|254780277|r  136 TIISTDKDLMQLVSPTTCLYDTV---KE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQ  209 (976)
Q Consensus       136 ~i~s~DkD~~Qlv~~~v~~~~~~---~~---~~~~~~~v~~~~gv~p~~~~d~~al~GD~sDnipGv~GiG~KtA~~ll~  209 (976)
T Consensus       176 av~SeD~D~l~fG~p~vlr~l~~s~~~k~~~~~i~l~~il~~l~lt~eqfidlcIL~G--cDY~~~I~GIGpk~A~klIk  253 (394)
T PTZ00217        176 AVATEDMDALTFGTPVLLRNLNFSEAKKRPIVEIHLDKVLKGLGLSMDQFIDLCILCG--CDYCDTIEGIGPKTAYELIK  253 (394)
T ss_pred             EEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHHHH
T ss_conf             9970442300037866887313466665544998899988774999999999999818--64468998748899999999


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHH-HHHHHHH-----
Q ss_conf             1367899986454200112232200-35789997655432035642247635521267676889986-5323368-----
Q gi|254780277|r  210 EYGNLENILINASRIKQKKRRENIL-EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF-LKALEFT-----  282 (976)
Q Consensus       210 ~~gsle~i~~~~d~i~~~k~~~~l~-~~~e~a~ls~~L~tL~~Dvpl~~~~~~l~~~~~d~~~l~~~-~~~lef~-----  282 (976)
T Consensus       254 ~~~sie~il~~~~~~k~-~~p~~~~~~~~r~~Fl-------~P~V~-~~~~~~l~w~~pd~e~l~~fL~~e~~Fse~Rv~  324 (394)
T PTZ00217        254 KYGSIEEILEHLDGTKY-PVPENFPYKEARELFL-------NPKVT-PAEEIDIKWSEPDIEGLKKFLVEEKNFNEERVE  324 (394)
T ss_pred             HHCCHHHHHHHHCCCCC-CCCCCCCHHHHHHHHC-------CCCCC-CCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHH
T ss_conf             95999999987412467-7998799799999962-------99888-976676508999989999997646697989999


Q ss_pred             HHHHHHHHH
Q ss_conf             999876531
Q gi|254780277|r  283 KLINRVATT  291 (976)
Q Consensus       283 ~ll~rL~~~  291 (976)
T Consensus       325 ~~~~~l~k~  333 (394)
T PTZ00217        325 KGIERLRKA  333 (394)
T ss_pred             HHHHHHHHH
T ss_conf             999999987