HHsearch alignment for GI: 254780277 and conserved domain: TIGR00573
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family; InterPro: IPR006054 All proteins in this entry for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the N-terminal region of DinG from some low GC Gram-positive bacteria. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.
Probab=97.38 E-value=0.00032 Score=49.34 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=91.5
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCC---------CCCCC-CCHHHHHHHHH
Q ss_conf 866852323322243311001244201025776654434550231374433345---------65001-78899997444
Q gi|254780277|r 385 ETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD---------STGKN-TLTKEILSYLK 454 (976)
Q Consensus 385 ~~~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d---------~~~~~-~~~~evl~~L~ 454 (976)
T Consensus 5 ~~~t~t~~d~e~tgl~~~~~~II~IGAv~~i~rr~~~~~~~~~~~P~-R~~~~~~~k~hGItDd~L~dkP~F~eia~dF~ 83 (228)
T TIGR00573 5 VLDTFTTGDNETTGLYAKHDEIIEIGAVEIINRRIIGNKFHTYIKPD-RLIDPDAIKIHGITDDMLKDKPDFKEIAEDFA 83 (228)
T ss_pred EEEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCEEECCEEEEECCC-CCCCCCEEEECCCCHHHHCCCCCHHHHHHHHH
T ss_conf 65426875211067632243045453376644614401005776188-88896425524888288468985137889999
Q ss_pred HHHCCCCCHHHHCCCCHHHHHHH----HCCCCC----CCCCCHHHHHHHHCCC--CCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf 42022210011003212378898----618866----6421002345543168--7667724667762244422335654
Q gi|254780277|r 455 KFFENEHFLKIGHNIKYDKLVLH----RYGISM----RGFEDIMLMSYVLDSG--RSSHDIASIAQKWLSYTRKEILKSR 524 (976)
Q Consensus 455 ~lle~~~i~kIgHN~KfD~~~L~----~~GI~l----~~i~DTmlaayLLdp~--~~~~~L~~la~~yL~~~~~e~~~~~ 524 (976)
T Consensus 84 ~~I~g~~L--v~HNA~FD~GFl~~e~~~LG~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~Ld~L~~~~~-~~-------- 152 (228)
T TIGR00573 84 DYIKGAVL--VIHNASFDVGFLNYEFSKLGLKKEPKTNDVIDTTDTLQAARPEFPGKRNTLDALALRYE-IT-------- 152 (228)
T ss_pred HHHCCCEE--EEEHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC-CC--------
T ss_conf 98379478--75200305778999998514501100114444999999997205884302777787805-44--------
Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 322210000001233332221111124567763222
Q gi|254780277|r 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 (976)
Q Consensus 525 k~~~~~~~i~~e~~~~Yaa~Da~~t~~L~~~l~~~L 560 (976)
T Consensus 153 ---------~s~R~~H~A~~DA~~l~~~~~~~~~~~ 179 (228)
T TIGR00573 153 ---------NSHRALHGALLDAFILAKLYLVMTGKQ 179 (228)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------037777317788999999999998612