HHsearch alignment for GI: 254780277 and conserved domain: TIGR01388
>TIGR01388 rnd ribonuclease D; InterPro: IPR006292 These proteins represent ribonuclease D, a 3-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Members of this family are restricted to the Proteobacteria; Aquifex, Mycobacteria and eukaryotes. Ribonuclease D is not essential in Escherichia coli but is deleterious when overexpressed. The precise biological role of ribonuclease D is still unknown. ; GO: 0004540 ribonuclease activity, 0008033 tRNA processing, 0005737 cytoplasm.
Probab=99.35 E-value=8e-12 Score=104.83 Aligned_cols=182 Identities=19% Similarity=0.141 Sum_probs=138.6
Q ss_pred EECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHH
Q ss_conf 54799999999999986685232332224331100124420102577665443455023137443334565001788999
Q gi|254780277|r 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI 449 (976)
Q Consensus 370 ~I~~~~~L~~li~~L~~~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~~ev 449 (976)
T Consensus 1 ~I~~~~~La~~c~~~~~~p~valDTEF~R~~TFwP~LgLiQ~a~g~~---------~~LIDPL~~------------~~~ 59 (374)
T TIGR01388 1 WITTDDELATVCEALRTEPFVALDTEFVRERTFWPQLGLIQVADGEQ---------LALIDPLVI------------DID 59 (374)
T ss_pred CCCCHHHHHHHHHHHCCCCEEECCCCEECCCCCCHHHCCEECCCCCE---------EEEECCCCC------------CCC
T ss_conf 98866889999986147883741554112653202040031137875---------687658887------------523
Q ss_pred HHHHHHHHCCCCCHHHHCCCCHHHHHHHHC-CCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 974444202221001100321237889861-8866642100234554316876677246677622444223356543222
Q gi|254780277|r 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528 (976)
Q Consensus 450 l~~L~~lle~~~i~kIgHN~KfD~~~L~~~-GI~l~~i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~ 528 (976)
T Consensus 60 ~~Pl~~lL~d~~v~KvlHAaseDlEvF~~l~g~lP~PLfDTQi~Aa~~G~-g~s~gY~~LV~~~~~v~Ld---Kse~rtD 135 (374)
T TIGR01388 60 LSPLLELLADESVVKVLHAASEDLEVFLNLFGVLPKPLFDTQIAAAFLGF-GESMGYDKLVQEVLGVELD---KSETRTD 135 (374)
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCC-CCCHHHHHHHHHHHCEECC---CCCCCCH
T ss_conf 47999997389815853045047999998705798883058899998367-8521089999997370317---8887222
Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 1000000123333222111112456776322210001345788607501
Q gi|254780277|r 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 (976)
Q Consensus 529 ~~~~i~~e~~~~Yaa~Da~~t~~L~~~l~~~L~~~~l~~l~~~iE~Pl~ 577 (976)
T Consensus 136 W~~RPLtd~Ql~YAaaDV~yL~~~y~~L~~~l~~~~R~~~l~e-e~~~~ 183 (374)
T TIGR01388 136 WLARPLTDKQLEYAAADVTYLLPLYEKLTERLAEEGRLAWLEE-ECELL 183 (374)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf 1047898778999999999999999999999988645999972-05987