>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.

Probab=99.29 E-value=2.7e-12 Score=108.21 Aligned_cols=190 Identities=18% Similarity=0.261 Sum_probs=138.3 Q ss_pred CCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCCCCCCCEECCCCC------ Q ss_conf 555666503547999999999999866852323322243311001244201025776-6544345502313744------ Q gi|254780277|r 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK-DDTSFKVETIFIDLSV------ 433 (976) Q Consensus 361 ~~~~~~~y~~I~~~~~L~~li~~L~~~~~ia~DtETt~ld~~~~~ivGisls~~~~~-~~~~~~~~~~yip~~~------ 433 (976) T Consensus 178 ~~lv~D~~Piv~n~~~~~~ldykl~DaTyVVfD~ETTGLsp~~d~iIE~gA~k~~nGk~ii~-~-~~~FikP~~~l~~~~ 255 (1264) T TIGR01405 178 ANLVDDRVPIVYNPKDQKFLDYKLKDATYVVFDIETTGLSPQYDEIIEFGAVKVKNGKRIID-K-FQFFIKPKEPLSAFV 255 (1264) T ss_pred EEEECCCCCEEECCCCCCHHCEEECCCEEEEEEEEECCCCCCCCCEEEEEEEEEECCCEEEE-E-HHHHCCCCCCCCCCE T ss_conf 78604886637666345100024236207996035158888614246787588746857623-1-232328875467542 Q ss_pred ----CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHCC-CCHHHHHHH----HCCCC-CC-CCCCHHHHHHHHCCCCCC Q ss_conf ----33345650017889999744442022210011003-212378898----61886-66-421002345543168766 Q gi|254780277|r 434 ----HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN-IKYDKLVLH----RYGIS-MR-GFEDIMLMSYVLDSGRSS 502 (976) Q Consensus 434 ----~~~~d~~~~~~~~~evl~~L~~lle~~~i~kIgHN-~KfD~~~L~----~~GI~-l~-~i~DTmlaayLLdp~~~~ 502 (976) T Consensus 256 ~elT~ITq~ml~n~~~~~~vL~k~~~f~~d~--ilVAHNGasFD~~Fl~~~~~k~~~~~~~~p~IDTL~Lar~lnP~y~s 333 (1264) T TIGR01405 256 TELTGITQDMLENAPEIEEVLEKFKEFLKDS--ILVAHNGASFDIGFLNTNFEKVGLEPLENPVIDTLELARALNPEYKS 333 (1264) T ss_pred EEECCCCHHHHCCCCCHHHHHHHHHHHHCCE--EEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC T ss_conf 6624664797379841789999999976975--88862761036688988987627742336511388999983731134 Q ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHC Q ss_conf 77246677622444223356543222100000012333322211111245677632221000-134578860 Q gi|254780277|r 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLD 573 (976) Q Consensus 503 ~~L~~la~~yL~~~~~e~~~~~k~~~~~~~i~~e~~~~Yaa~Da~~t~~L~~~l~~~L~~~~-l~~l~~~iE 573 (976) T Consensus 334 h~Lg~~~~Kl-~v~~~-----------------~e~~HRA~YDa~~t~~vF~~~~~~~~e~gGi~~l-~~ln 386 (1264) T TIGR01405 334 HRLGEIAKKL-GVDLD-----------------DERHHRADYDAEATAKVFIVMVEQLKEKGGITNL-EELN 386 (1264) T ss_pred CCCCHHHHHC-CCCCC-----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH-HHCC T ss_conf 4542233320-55215-----------------3301243347999999999999998750372112-3405

HHsearch alignment for GI: 254780277 and conserved domain: TIGR01405