HHsearch alignment for GI: 254780277 and conserved domain: TIGR01448
>TIGR01448 recD_rel helicase, RecD/TraA family; InterPro: IPR006345 These sequences represent a family similar to RecD, the exodeoxyribonuclease V alpha chain of IPR006344 from INTERPRO. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. .
Probab=94.33 E-value=0.03 Score=34.96 Aligned_cols=63 Identities=24% Similarity=0.389 Sum_probs=37.5
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC--CHHHHHHHHHH---HHH--HHHHHHHCCCHHHHHHHHHHH
Q ss_conf 787777875187435899877636024998984136--78999864542---001--122322003578999765543
Q gi|254780277|r 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG--NLENILINASR---IKQ--KKRRENILEYAETARLSRKLV 247 (976)
Q Consensus 177 ~~~~d~~al~GD~sDnipGv~GiG~KtA~~ll~~~g--sle~i~~~~d~---i~~--~k~~~~l~~~~e~a~ls~~L~ 247 (976)
T Consensus 87 ~gi~~Yl-----~S~~---~KGvGk~~Aq~Iv~TfGe~~~~~l~~~P~kL~~V~G~s~~~~~~~~~~~~~~~~~~~~l 156 (769)
T TIGR01448 87 EGIVAYL-----SSSS---IKGVGKKLAQRIVETFGEAAIDVLDDDPEKLLEVSGISKANLEKIVSQLSKQKDERKLL 156 (769)
T ss_pred HHHHHHH-----HCCC---CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7876555-----2254---16720577899999876999988740860103307756677899999999755899999