HHsearch alignment for GI: 254780277 and conserved domain: TIGR02236
>TIGR02236 recomb_radA DNA repair and recombination protein RadA; InterPro: IPR011938 This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO), and archaeal RadB (IPR011939 from INTERPRO). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=93.47 E-value=0.058 Score=32.89 Aligned_cols=34 Identities=29% Similarity=0.557 Sum_probs=26.1
Q ss_pred CCCCCCCCCCHHHHHHH-HHCCCHHHH-HHHHHHHH
Q ss_conf 89987763602499898-413678999-86454200
Q gi|254780277|r 192 NIPGIPGIGYKTAALLL-QEYGNLENI-LINASRIK 225 (976)
Q Consensus 192 nipGv~GiG~KtA~~ll-~~~gsle~i-~~~~d~i~ 225 (976)
T Consensus 1 ~ledLPGVGp~TA~KL~EaGy~t~~~iA~A~~~EL~ 36 (333)
T TIGR02236 1 DLEDLPGVGPATAEKLREAGYDTLEAIAVASPKELS 36 (333)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 966578975768899886107889998445857953