HHsearch alignment for GI: 254780277 and conserved domain: cd00128
>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases. XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1; divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases.
Probab=99.97 E-value=7.3e-29 Score=229.11 Aligned_cols=261 Identities=25% Similarity=0.329 Sum_probs=199.5
Q ss_pred CEEEEEECCHHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHCCHHHHCCC
Q ss_conf 72899966269998874267544689885500699999999999998485547987999972748871324086521667
Q gi|254780277|r 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR 84 (976)
Q Consensus 5 ~~~~liDg~~~~~ra~~a~p~~~~~~~G~~t~ai~gf~~~l~~~i~~~~~~~~~~~~~v~fD~~~~tfR~~~~~~YKa~R 84 (976)
T Consensus 24 gk~iAIDas~~Lyq~l~~~~~~~~-~~~~~~~~l~g~~~ri~~Ll~~~------I~PifVFDG~~p~~K~~~~~~R~~~r 96 (316)
T cd00128 24 GKKVAIDASIWLYQFLKACRQELG-SGGETTSHLQGFFYRTCRLLELG------IKPVFVFDGKPPPLKAETLAKRRERR 96 (316)
T ss_pred CCEEEEECHHHHHHHHHHCCHHHC-CCCCCCHHHHHHHHHHHHHHHCC------CEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 998999718999999985372331-48986679999999999999779------95999989989864347889889999
Q ss_pred CCCCHHHH-----------------------HHHHHHHHHHHHCCCCEEEECCEEHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 98797588-----------------------6489999999970997995689016658999999998489949998687
Q gi|254780277|r 85 PKIPEMLL-----------------------PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTD 141 (976)
Q Consensus 85 ~~~p~~l~-----------------------~q~~~i~~~l~~~gi~~~~~~~~EADDviatla~~~~~~~~~v~i~s~D 141 (976)
T Consensus 97 ~~a~~~~~~~~~~~~~~~~~k~~~~~~~it~~~i~~~k~LL~~~GIpyi~Ap~-EAEAqcA~L~k----~g~vd~v~SeD 171 (316)
T cd00128 97 EEAEEEAKEALEKGLEEEAKKLERRAVRVTPQMIEEAKELLRLMGIPYIVAPY-EAEAQCAYLAK----KGLVDAIITED 171 (316)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCC-HHHHHHHHHHH----CCCEEEEEECC
T ss_conf 99999999999715999999998501558767789999999986998773580-39999999997----79858999656
Q ss_pred CHHHEECCCCEEEEECCC----CCEECHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHH
Q ss_conf 012122379759996678----8353899998884898878777787518743589987763602499898413678999
Q gi|254780277|r 142 KDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217 (976)
Q Consensus 142 kD~~Qlv~~~v~~~~~~~----~~~~~~~~v~~~~gv~p~~~~d~~al~GD~sDnipGv~GiG~KtA~~ll~~~gsle~i 217 (976)
T Consensus 172 sD~l~fGa~~vlr~l~~~~~~~~~~~~~~~i~~~l~l~~~~~id~~iL~G--~Dy~~gi~giG~k~A~kli~~~~~~e~~ 249 (316)
T cd00128 172 SDLLLFGAPRVYRNLFDSGAKPVEEIDLEKILKELGLTREKLIDLAILLG--CDYTEGIPGIGPVTALKLIKKYGDIEKD 249 (316)
T ss_pred CHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHHHHHHCCHHHH
T ss_conf 11453288778861454689876998889978773999999999999729--8878999973599999999991999999
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 86454200112232200357899976554320356422476355212676768899865-32336899987653
Q gi|254780277|r 218 LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL-KALEFTKLINRVAT 290 (976)
Q Consensus 218 ~~~~d~i~~~k~~~~l~~~~e~a~ls~~L~tL~~Dvpl~~~~~~l~~~~~d~~~l~~~~-~~lef~~ll~rL~~ 290 (976)
T Consensus 250 ~~~l~~~~~-~~~~~--~~~~~~---~~~f---~~p~v~~~~~~~~~~~pd~~~l~~fl~~e~~f~--~~rv~~ 312 (316)
T cd00128 250 IERLKKKLY-RSPED--FPLKEA---REFF---LNPEVTDDFIDLRWRDPDEEGIIEFLCKEHGFN--EDRVLK 312 (316)
T ss_pred HHHHHHCCC-CCCCC--CCHHHH---HHHH---CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC--HHHHHH
T ss_conf 999983487-69999--997999---9985---799999986676569999899999974366989--999997