HHsearch alignment for GI: 254780277 and conserved domain: cd00128

>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases. XPG is a eukaryotic enzyme that functions in nucleotide-excision repair and transcription-coupled repair of oxidative DNA damage. Functionally/structurally related to FEN-1; divalent metal ion-dependent exo- and endonuclease, and bacterial and bacteriophage 5'3' exonucleases.
Probab=99.97  E-value=7.3e-29  Score=229.11  Aligned_cols=261  Identities=25%  Similarity=0.329  Sum_probs=199.5

Q ss_pred             CEEEEEECCHHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHCCHHHHCCC
Q ss_conf             72899966269998874267544689885500699999999999998485547987999972748871324086521667
Q gi|254780277|r    5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANR   84 (976)
Q Consensus         5 ~~~~liDg~~~~~ra~~a~p~~~~~~~G~~t~ai~gf~~~l~~~i~~~~~~~~~~~~~v~fD~~~~tfR~~~~~~YKa~R   84 (976)
T Consensus        24 gk~iAIDas~~Lyq~l~~~~~~~~-~~~~~~~~l~g~~~ri~~Ll~~~------I~PifVFDG~~p~~K~~~~~~R~~~r   96 (316)
T cd00128          24 GKKVAIDASIWLYQFLKACRQELG-SGGETTSHLQGFFYRTCRLLELG------IKPVFVFDGKPPPLKAETLAKRRERR   96 (316)
T ss_pred             CCEEEEECHHHHHHHHHHCCHHHC-CCCCCCHHHHHHHHHHHHHHHCC------CEEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             998999718999999985372331-48986679999999999999779------95999989989864347889889999


Q ss_pred             CCCCHHHH-----------------------HHHHHHHHHHHHCCCCEEEECCEEHHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             98797588-----------------------6489999999970997995689016658999999998489949998687
Q gi|254780277|r   85 PKIPEMLL-----------------------PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTD  141 (976)
Q Consensus        85 ~~~p~~l~-----------------------~q~~~i~~~l~~~gi~~~~~~~~EADDviatla~~~~~~~~~v~i~s~D  141 (976)
T Consensus        97 ~~a~~~~~~~~~~~~~~~~~k~~~~~~~it~~~i~~~k~LL~~~GIpyi~Ap~-EAEAqcA~L~k----~g~vd~v~SeD  171 (316)
T cd00128          97 EEAEEEAKEALEKGLEEEAKKLERRAVRVTPQMIEEAKELLRLMGIPYIVAPY-EAEAQCAYLAK----KGLVDAIITED  171 (316)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEECCC-HHHHHHHHHHH----CCCEEEEEECC
T ss_conf             99999999999715999999998501558767789999999986998773580-39999999997----79858999656


Q ss_pred             CHHHEECCCCEEEEECCC----CCEECHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHH
Q ss_conf             012122379759996678----8353899998884898878777787518743589987763602499898413678999
Q gi|254780277|r  142 KDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI  217 (976)
Q Consensus       142 kD~~Qlv~~~v~~~~~~~----~~~~~~~~v~~~~gv~p~~~~d~~al~GD~sDnipGv~GiG~KtA~~ll~~~gsle~i  217 (976)
T Consensus       172 sD~l~fGa~~vlr~l~~~~~~~~~~~~~~~i~~~l~l~~~~~id~~iL~G--~Dy~~gi~giG~k~A~kli~~~~~~e~~  249 (316)
T cd00128         172 SDLLLFGAPRVYRNLFDSGAKPVEEIDLEKILKELGLTREKLIDLAILLG--CDYTEGIPGIGPVTALKLIKKYGDIEKD  249 (316)
T ss_pred             CHHHHCCCCEEEEECCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHC--CCCCCCCCCCCHHHHHHHHHHHCCHHHH
T ss_conf             11453288778861454689876998889978773999999999999729--8878999973599999999991999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf             86454200112232200357899976554320356422476355212676768899865-32336899987653
Q gi|254780277|r  218 LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL-KALEFTKLINRVAT  290 (976)
Q Consensus       218 ~~~~d~i~~~k~~~~l~~~~e~a~ls~~L~tL~~Dvpl~~~~~~l~~~~~d~~~l~~~~-~~lef~~ll~rL~~  290 (976)
T Consensus       250 ~~~l~~~~~-~~~~~--~~~~~~---~~~f---~~p~v~~~~~~~~~~~pd~~~l~~fl~~e~~f~--~~rv~~  312 (316)
T cd00128         250 IERLKKKLY-RSPED--FPLKEA---REFF---LNPEVTDDFIDLRWRDPDEEGIIEFLCKEHGFN--EDRVLK  312 (316)
T ss_pred             HHHHHHCCC-CCCCC--CCHHHH---HHHH---CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC--HHHHHH
T ss_conf             999983487-69999--997999---9985---799999986676569999899999974366989--999997