HHsearch alignment for GI: 254780277 and conserved domain: cd05778
>cd05778 DNA_polB_zeta_exo The 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta. DNA polymerase zeta is a family-B DNA polymerase which is distantly related to DNA polymerase delta. It plays a major role in translesion replication and the production of either spontaneous or induced mutations. In addition, DNA polymerase zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The DnaQ-like 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are crucial for metal binding and catalysis.
Probab=94.32 E-value=0.065 Score=32.56 Aligned_cols=54 Identities=7% Similarity=-0.018 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCCCC--CCHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 76677246677622444223356543222--1000000123333222111112456
Q gi|254780277|r 500 RSSHDIASIAQKWLSYTRKEILKSRKSSI--PIDKISDSQVQEHAIENSNVILQLW 553 (976)
Q Consensus 500 ~~~~~L~~la~~yL~~~~~e~~~~~k~~~--~~~~i~~e~~~~Yaa~Da~~t~~L~ 553 (976)
T Consensus 175 L~sYsLe~V~~~~L~e~k~~~~~~~l~~~~~~g~~~~r~~v~~Yclkd~~l~l~Ll 230 (231)
T cd05778 175 LTNYTLENVVYHVLHQRIPLYSNKTLTEWYKSGSASERWRVLEYYLKRVRLNLEIL 230 (231)
T ss_pred CCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHEEEHHHHHHHHHHH
T ss_conf 44387999999996798888999999999974998785164400075305158652