HHsearch alignment for GI: 254780277 and conserved domain: cd06125

>cd06125 DnaQ_like_exo The DnaQ-like exonuclease superfamily is a structurally conserved group of 3'-5' exonucleases, which catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. It is also called the DEDD superfamily, after the four invariant acidic residues present in the catalytic site of its members. The superfamily consists of DNA- and RNA-processing enzymes such as the proofreading domains of DNA polymerases, other DNA exonucleases, RNase D, RNase T, Oligoribonuclease and RNA exonucleases (REX). The DnaQ-like exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation patterns of the three motifs may vary among different subfamilies. DnaQ-like exonucleases are classified as DEDDy or DEDDh exonucleases depending on the variation of motif
Probab=98.36  E-value=1.8e-07  Score=73.04  Aligned_cols=104  Identities=22%  Similarity=0.324  Sum_probs=63.4

Q ss_pred             CCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCC-EECCCC----CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCH
Q ss_conf             232332224331-1001244201025776654434550-231374----4333456500178899997444420222100
Q gi|254780277|r  390 ASFKIITDTMDA-FHSKPIAIAISTLDQKDDTSFKVET-IFIDLS----VHTSQDSTGKNTLTKEILSYLKKFFENEHFL  463 (976)
Q Consensus       390 ia~DtETt~ld~-~~~~ivGisls~~~~~~~~~~~~~~-~yip~~----~~~~~d~~~~~~~~~evl~~L~~lle~~~i~  463 (976)
T Consensus         1 Vv~D~ETTGl~~~~~d~Iiei~~v~~~~~~~~~~~v~p~~~i~~~~~~i~gi~~~~v~~~p~~~~~~~~~~~f~~~~~~i   80 (130)
T cd06125           1 VAFDIETTGLNGNARDEIIEIALVVVHIGEKFVFDVKPDDLIDPYAFTISGITDEVVERAATEAELLIELLAFLRDKDDI   80 (130)
T ss_pred             CEEEEECCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             98980189969999985899999997189889999799998997794103759999833060899999999997699999


Q ss_pred             HHHCCCCHHHHHHH----HCCCCCC----CCCCHHHHH
Q ss_conf             11003212378898----6188666----421002345
Q gi|254780277|r  464 KIGHNIKYDKLVLH----RYGISMR----GFEDIMLMS  493 (976)
Q Consensus       464 kIgHN~KfD~~~L~----~~GI~l~----~i~DTmlaa  493 (976)
T Consensus        81 lVgHN~~FD~~fL~~~~~r~g~~~~~~~~~~iDTl~la  118 (130)
T cd06125          81 LVGHNISFDLPYLLNRAAELGIPYPILGRIVFDTLALA  118 (130)
T ss_pred             EEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHH
T ss_conf             99919477499999999984999987899686860984