HHsearch alignment for GI: 254780277 and conserved domain: cd06125
>cd06125 DnaQ_like_exo The DnaQ-like exonuclease superfamily is a structurally conserved group of 3'-5' exonucleases, which catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. It is also called the DEDD superfamily, after the four invariant acidic residues present in the catalytic site of its members. The superfamily consists of DNA- and RNA-processing enzymes such as the proofreading domains of DNA polymerases, other DNA exonucleases, RNase D, RNase T, Oligoribonuclease and RNA exonucleases (REX). The DnaQ-like exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation patterns of the three motifs may vary among different subfamilies. DnaQ-like exonucleases are classified as DEDDy or DEDDh exonucleases depending on the variation of motif
Probab=98.36 E-value=1.8e-07 Score=73.04 Aligned_cols=104 Identities=22% Similarity=0.324 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCC-EECCCC----CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCH
Q ss_conf 232332224331-1001244201025776654434550-231374----4333456500178899997444420222100
Q gi|254780277|r 390 ASFKIITDTMDA-FHSKPIAIAISTLDQKDDTSFKVET-IFIDLS----VHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463 (976)
Q Consensus 390 ia~DtETt~ld~-~~~~ivGisls~~~~~~~~~~~~~~-~yip~~----~~~~~d~~~~~~~~~evl~~L~~lle~~~i~ 463 (976)
T Consensus 1 Vv~D~ETTGl~~~~~d~Iiei~~v~~~~~~~~~~~v~p~~~i~~~~~~i~gi~~~~v~~~p~~~~~~~~~~~f~~~~~~i 80 (130)
T cd06125 1 VAFDIETTGLNGNARDEIIEIALVVVHIGEKFVFDVKPDDLIDPYAFTISGITDEVVERAATEAELLIELLAFLRDKDDI 80 (130)
T ss_pred CEEEEECCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 98980189969999985899999997189889999799998997794103759999833060899999999997699999
Q ss_pred HHHCCCCHHHHHHH----HCCCCCC----CCCCHHHHH
Q ss_conf 11003212378898----6188666----421002345
Q gi|254780277|r 464 KIGHNIKYDKLVLH----RYGISMR----GFEDIMLMS 493 (976)
Q Consensus 464 kIgHN~KfD~~~L~----~~GI~l~----~i~DTmlaa 493 (976)
T Consensus 81 lVgHN~~FD~~fL~~~~~r~g~~~~~~~~~~iDTl~la 118 (130)
T cd06125 81 LVGHNISFDLPYLLNRAAELGIPYPILGRIVFDTLALA 118 (130)
T ss_pred EEEECHHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHH
T ss_conf 99919477499999999984999987899686860984