HHsearch alignment for GI: 254780277 and conserved domain: cd06127

>cd06127 DEDDh DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDy exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.
Probab=98.63  E-value=1.2e-07  Score=74.35  Aligned_cols=142  Identities=15%  Similarity=0.152  Sum_probs=88.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEC-CCC---------CCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             2323322243311001244201025776654434550231-374---------433345650017889999744442022
Q gi|254780277|r  390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI-DLS---------VHTSQDSTGKNTLTKEILSYLKKFFEN  459 (976)
Q Consensus       390 ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yi-p~~---------~~~~~d~~~~~~~~~evl~~L~~lle~  459 (976)
T Consensus         1 v~~D~ETTGl~~~~~~Iieia~v~~~~~~~~~~-~~~~~i~P~~~~~~~~~~i~gi~~~~~~~~~~~~~~~~~~~~~l~~   79 (159)
T cd06127           1 VVLDTETTGLDPKGDRIIEIGAVKVDGGIEIVE-RFETLVNPGRPIPPEATAIHGITDEMLADAPPFEEVLPEFLEFLGG   79 (159)
T ss_pred             CEEEEECCCCCCCCCCEEEEEEEEEECCEEEEE-EEEEEECCCCCCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf             989826799999998469999999999956520-0799988999999889876067789958999689999999873156


Q ss_pred             CCCHHHHCCCCHHHHHHHH----CCCCCC--CCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             2100110032123788986----188666--4210023455431687667724667762244422335654322210000
Q gi|254780277|r  460 EHFLKIGHNIKYDKLVLHR----YGISMR--GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI  533 (976)
Q Consensus       460 ~~i~kIgHN~KfD~~~L~~----~GI~l~--~i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~~~i  533 (976)
T Consensus        80 ~--~lv~hN~~FD~~~L~~~~~~~~~~~~~~~~iDt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  142 (159)
T cd06127          80 R--VLVAHNASFDLRFLNRELRRLGGPPLPNPWIDTLRLARRLLPGLRSHRLGLLLAARYGIPLE---------------  142 (159)
T ss_pred             C--EEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHHCCCCCC---------------
T ss_conf             3--46515888999999999998399988996664799999973888899999999997698879---------------


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q ss_conf             00123333222111112456
Q gi|254780277|r  534 SDSQVQEHAIENSNVILQLW  553 (976)
Q Consensus       534 ~~e~~~~Yaa~Da~~t~~L~  553 (976)
T Consensus       143 ----~aH~Al~D~~at~~l~  158 (159)
T cd06127         143 ----GAHRALADALATAELL  158 (159)
T ss_pred             ----CCCCHHHHHHHHHHHH
T ss_conf             ----8959899999999996