HHsearch alignment for GI: 254780277 and conserved domain: cd06134

>cd06134 RNaseT RNase T is a DEDDh-type DnaQ-like 3'-5' exoribonuclease E implicated in the 3' maturation of small stable RNAs and 23srRNA, and in the end turnover of tRNA. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase T is related to the proofreading domain of DNA polymerase III. Despite its important role, RNase T is mainly found only in gammaproteobacteria. It is speculated that it might have originated from DNA polymerase III at the time the gamma division of proteobacteria diverged from other bacteria. RNase T is a homodimer with the catalytic residues of one monomer contacting a large basic patch on the other monomer to form a functional active site.
Probab=98.66  E-value=7.7e-08  Score=75.78  Aligned_cols=151  Identities=15%  Similarity=0.145  Sum_probs=84.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCC--CCCCC-CCCCCCEEC-CC-----CCC------CCCCC-----CCCCCCHH
Q ss_conf             8523233222433110012442010257--76654-434550231-37-----443------33456-----50017889
Q gi|254780277|r  388 GSASFKIITDTMDAFHSKPIAIAISTLD--QKDDT-SFKVETIFI-DL-----SVH------TSQDS-----TGKNTLTK  447 (976)
Q Consensus       388 ~~ia~DtETt~ld~~~~~ivGisls~~~--~~~~~-~~~~~~~yi-p~-----~~~------~~~d~-----~~~~~~~~  447 (976)
T Consensus         6 ~~VV~D~ETTGL~p~~d~IIEIgav~v~~d~~g~i~~~~~~~~~v~P~~~~~i~~~~~~itGIt~~~~~~~~~~~~~~~~   85 (189)
T cd06134           6 LPVVVDVETGGFNPQTDALLEIAAVTLEMDEQGNLYPDETFHFHILPFEGANLDPAALEFNGIDPFHPFRFAVDEKEALK   85 (189)
T ss_pred             CCEEEEEECCCCCCCCCEEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCHHHHCCCCCHHHHHH
T ss_conf             50799952899998898079999999997687853245168997789889989855665507770011001675778899


Q ss_pred             HHHHHHHHHHCCC---CCHHHHCCCCHHHHHHH----HCCCCCC---C--CCCHHHHHHHHCCCCCCCCHHHHHHHHCCC
Q ss_conf             9997444420222---10011003212378898----6188666---4--210023455431687667724667762244
Q gi|254780277|r  448 EILSYLKKFFENE---HFLKIGHNIKYDKLVLH----RYGISMR---G--FEDIMLMSYVLDSGRSSHDIASIAQKWLSY  515 (976)
Q Consensus       448 evl~~L~~lle~~---~i~kIgHN~KfD~~~L~----~~GI~l~---~--i~DTmlaayLLdp~~~~~~L~~la~~yL~~  515 (976)
T Consensus        86 ~~~~~i~~~~~~~~~~~avlVaHNa~FD~~FL~~~~~r~g~~~~p~~~~~~~DTl~La~~~~~---~~~L~~l~~~~-gi  161 (189)
T cd06134          86 EIFKPIRKALKAQGCTRAILVGHNAHFDLGFLNAAVARCKIKRNPFHPFSTFDTATLAGLAYG---QTVLAKACQAA-GI  161 (189)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHC---CCCHHHHHHHC-CC
T ss_conf             999999999875167555687517777299999999984998888877765669999867738---00199999987-99


Q ss_pred             CCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             42233565432221000000123333222111112456776322
Q gi|254780277|r  516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK  559 (976)
Q Consensus       516 ~~~e~~~~~k~~~~~~~i~~e~~~~Yaa~Da~~t~~L~~~l~~~  559 (976)
T Consensus       162 ~~~-----------------~~~~HrAl~DA~~ta~lf~~l~~k  188 (189)
T cd06134         162 EFD-----------------NKEAHSALYDTQKTAELFCKIVNR  188 (189)
T ss_pred             CCC-----------------CCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999-----------------987887299999999999999964