HHsearch alignment for GI: 254780277 and conserved domain: cd06141
>cd06141 WRN_exo WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability.
Probab=99.45 E-value=5.4e-13 Score=113.38 Aligned_cols=162 Identities=19% Similarity=0.238 Sum_probs=115.8
Q ss_pred CCHHHHHHHHHHHH-HCCCCCCCCCCCCC--CCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHH
Q ss_conf 79999999999998-66852323322243--3110012442010257766544345502313744333456500178899
Q gi|254780277|r 372 VNTKDIQQWVQKLE-TIGSASFKIITDTM--DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448 (976)
Q Consensus 372 ~~~~~L~~li~~L~-~~~~ia~DtETt~l--d~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~~e 448 (976)
T Consensus 2 ~~~~~~~~~~~~~l~~~~vvG~D~Ew~~~~~~~~~~~~aliQlat~~~---------~~l~d~~~~------------~~ 60 (168)
T cd06141 2 DSAQDAEEAVKELLDDEKVVGFDLEWRPSFRKGKRNKVALLQLASESR---------CLLFQLSHM------------DK 60 (168)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECEECCCCCCCCCCCCEEEEEECCCC---------EEEEEECCC------------CH
T ss_conf 748899999999856898899966455877778889715999824996---------599974033------------12
Q ss_pred HHHHHHHHHCCCCCHHHHCCCCHHHHHHHH-CCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 997444420222100110032123788986-1886664210023455431687667724667762244422335654322
Q gi|254780277|r 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527 (976)
Q Consensus 449 vl~~L~~lle~~~i~kIgHN~KfD~~~L~~-~GI~l~~i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~ 527 (976)
T Consensus 61 ~~~~L~~lL~~~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~~a~~~~~~~~~~sL~~l~~~~lg~~l~K~--k~~q~ 138 (168)
T cd06141 61 LPPSLKQLLEDPSILKVGVGIKGDARKLRRDFGIEVRGVVDLSHLAKRVGPRRKLVSLARLVEEVLGLPLSKD--KKVRC 138 (168)
T ss_pred HHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHCCCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCC--CCCCC
T ss_conf 0499999975998079996318899999874450248765699999985777776329999999839621546--65203
Q ss_pred CCCHHHCC-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 21000000-123333222111112456776
Q gi|254780277|r 528 IPIDKISD-SQVQEHAIENSNVILQLWLLL 556 (976)
Q Consensus 528 ~~~~~i~~-e~~~~Yaa~Da~~t~~L~~~l 556 (976)
T Consensus 139 SdW~~rpLs~~Qi~YAA~Da~~~~~l~~~L 168 (168)
T cd06141 139 SNWEARPLSKEQILYAATDAYASLELYRKL 168 (168)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 888999999999999999999999999739