HHsearch alignment for GI: 254780277 and conserved domain: cd06146
>cd06146 mut-7_like_exo The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=99.39 E-value=3.7e-12 Score=107.30 Aligned_cols=168 Identities=16% Similarity=0.206 Sum_probs=118.4
Q ss_pred EEECCHHHHHHHHHHH--HHCCCCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 3547999999999999--8668523233222--43311001244201025776654434550231374433345650017
Q gi|254780277|r 369 TKIVNTKDIQQWVQKL--ETIGSASFKIITD--TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444 (976)
Q Consensus 369 ~~I~~~~~L~~li~~L--~~~~~ia~DtETt--~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~ 444 (976)
T Consensus 2 ~~v~~~~~l~~~~~~~~l~~~~vvg~D~Ew~~~~~~~~~~~vaLiQlat~~~---------~~liD~~~~-------~~~ 65 (191)
T cd06146 2 HIVDSEEELEALLLALSLEAGRVVGIDSEWKPSFLGDSDPRVAILQLATEDE---------VFLLDLLAL-------ENL 65 (191)
T ss_pred EEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEEECCCC---------CEEEEEECC-------CCC
T ss_conf 8978899999999998426898899978757877788889527999952997---------589997045-------654
Q ss_pred CHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHH-CCC------CCCCCCCHHHHHHHHCCC----------CCCCCHHH
Q ss_conf 8899997444420222100110032123788986-188------666421002345543168----------76677246
Q gi|254780277|r 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGI------SMRGFEDIMLMSYVLDSG----------RSSHDIAS 507 (976)
Q Consensus 445 ~~~evl~~L~~lle~~~i~kIgHN~KfD~~~L~~-~GI------~l~~i~DTmlaayLLdp~----------~~~~~L~~ 507 (976)
T Consensus 66 ~~~~~~~~L~~ll~~~~i~Kvg~~~~~D~~~L~~~~~~~~~~~~~~~~~~Dl~~~a~~~~~~~~~~~~~~~~~~~~gL~~ 145 (191)
T cd06146 66 ESEDWDRLLKRLFEDPDVLKLGFGFKQDLKALSASYPALKCMFERVQNVLDLQNLAKELQKSDMGRLKGNLPSKTKGLAD 145 (191)
T ss_pred CHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCHHHCCCCCCCCHHH
T ss_conf 34778999999947999689994438689999986586432333644035799999997311221011003556756999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCHHHCC-HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6776224442233565432221000000-123333222111112456776
Q gi|254780277|r 508 IAQKWLSYTRKEILKSRKSSIPIDKISD-SQVQEHAIENSNVILQLWLLL 556 (976)
Q Consensus 508 la~~yL~~~~~e~~~~~k~~~~~~~i~~-e~~~~Yaa~Da~~t~~L~~~l 556 (976)
T Consensus 146 L~~~~lg~~l~K---~-~q~SnW~~rPLt~~Qi~YAA~Da~~ll~iy~~L 191 (191)
T cd06146 146 LVQAVLGKPLDK---S-EQCSNWERRPLREEQILYAALDAYCLLEVFDKL 191 (191)
T ss_pred HHHHHHCCCCCC---C-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999990987885---6-513899999899999999999899999999739