HHsearch alignment for GI: 254780277 and conserved domain: pfam00476
>pfam00476 DNA_pol_A DNA polymerase family A.
Probab=100.00 E-value=0 Score=973.08 Aligned_cols=382 Identities=49% Similarity=0.761 Sum_probs=375.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC-CCCCCCCHHHHHHHHCCCCHHH
Q ss_conf 058999986434368999999999740345577776566679987420788755566-5453531788776530476279
Q gi|254780277|r 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTAQDLEQINCGDNPII 668 (976)
Q Consensus 590 vD~~~L~~l~~~l~~~l~~le~~i~~~aG~~FNinSpkQL~~vLf~~LgLp~~kKTk-tG~~ST~~~~Le~L~~~~hp~~ 668 (976)
T Consensus 1 vd~~~l~~~~~~l~~~~~~l~~~i~~~aG~~fN~~S~~ql~~vLf~~l~l~~~~~t~~~g~~st~~~~L~~l~~~~hp~~ 80 (383)
T pfam00476 1 VDVEYLEELSNELGAQLADLEFKIPELAGEEFNLGSPKQLGVLLFEELGLPKTKKTDKTGARSTNADVLESLREDAHEII 80 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHH
T ss_conf 98899999999999999999999999959976999989999984973599999977899998678999998761688699
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEE
Q ss_conf 99999987888988653200111100123334533002221000001333433345563322224302424899489996
Q gi|254780277|r 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748 (976)
Q Consensus 669 ~~iLeyR~l~KL~sTY~~~l~~~i~~~dgRIH~~f~q~~t~TGRlSs~~PNlQNiP~r~~~g~~iR~~F~a~~g~~lv~a 748 (976)
T Consensus 81 ~~il~~R~~~Kl~~t~~~~l~~~~~~~~gRih~~~nq~gt~TGRlSs~~PNlQniP~~~~~g~~iR~~Fva~~G~~lv~a 160 (383)
T pfam00476 81 KIILEYRQLSKLQSTYVDKLPLMIDPDDGRIHTSYNQAGTATGRLSSTDPNLQNIPIRNEYGREIRAAFIAEPGYVLVAA 160 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCEEECCCCCEEECCCCCCCCCCCCCCCCCCHHHHHEEECCCCCEEEEE
T ss_conf 99999999999999999998886267898680124226420220356798645799888430556743627999878850
Q ss_pred ECCCCCEEEEEEEEEHHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHH
Q ss_conf 32654436876651037778734069888999998980999688998888630251356440777035678819998999
Q gi|254780277|r 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 (976)
Q Consensus 749 DySQiElRilA~ls~D~~l~~af~~g~DiH~~tA~~vf~~~~~~vt~~~R~~aK~infgi~YG~~~~~La~~l~is~~eA 828 (976)
T Consensus 161 DySQiElRilA~ls~D~~l~~af~~g~Dih~~tA~~ifg~~~~~v~~~~R~~AK~~~fGi~YG~g~~~La~~l~is~~eA 240 (383)
T pfam00476 161 DYSQIELRILAHLSGDENLIEAFRTGADIHTLTAADIFGVDLHEVTGNQRRNAKTFNFGRIYGASAKGLSQLLGISREEA 240 (383)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHH
T ss_conf 58776688887520548899987027658898899984999788685567677771316644846889998858889999
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHCCCEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999988889999999999999849888277876018987588378887787877013456538999999999999
Q gi|254780277|r 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908 (976)
Q Consensus 829 ~~~i~~yf~~~p~v~~~~~~~~~~a~~~gyv~T~~GRrr~~p~i~s~~~~~r~~aeR~a~N~~iQGsaAdi~k~am~~i~ 908 (976)
T Consensus 241 ~~~i~~~~~~yp~i~~~~~~~~~~a~~~g~v~T~~GRrr~lp~~~~~~~~~~~~~~r~a~N~~IQGsAADi~k~Ami~i~ 320 (383)
T pfam00476 241 KEFIEKYFERFPGVKRYREKTRKEAKKGGYVETLFGRRRYLPDIDSRNRSLREAAERAALNTPIQGSAADILKLAMIKLD 320 (383)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999978369999999999999689611456876755775666788886776765353268689999999999999
Q ss_pred HHHHHCCCCEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCHHHH
Q ss_conf 9998659981899972638999559879999999999996510135744446438883320893781
Q gi|254780277|r 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975 (976)
Q Consensus 909 ~~~~~~~~~~~~ilqVHDElv~ev~~~~~~~~~~~~~~~Me~~~~~~~~l~VPl~v~~~~G~~W~e~ 975 (976)
T Consensus 321 ~~l~~~~~~~~lvlqVHDElv~evp~~~~~~~~~~v~~~Me~~~----~l~VPl~v~~~~G~~Wgea 383 (383)
T pfam00476 321 EALVEKGLDARMCLQVHDEIVFEVPKEEAEAVAAQIKELMERAM----FLDVPLLVEVGQGRNWFSA 383 (383)
T ss_pred HHHHHCCCCCEEEEEECEEEEEEECHHHHHHHHHHHHHHHHHHC----CCCCCEEEECCCCCCHHCC
T ss_conf 99985499978999635411899768999999999999996042----7899679653827880147