HHsearch alignment for GI: 254780277 and conserved domain: pfam00929

>pfam00929 Exonuc_X-T Exonuclease. This family includes a variety of exonuclease proteins, such as ribonuclease T and the epsilon subunit of DNA polymerase III.;
Probab=98.45  E-value=3.9e-07  Score=70.63  Aligned_cols=144  Identities=14%  Similarity=0.176  Sum_probs=89.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEC-C---CC------CCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             52323322243311001244201025776654434550231-3---74------43334565001788999974444202
Q gi|254780277|r  389 SASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI-D---LS------VHTSQDSTGKNTLTKEILSYLKKFFE  458 (976)
Q Consensus       389 ~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yi-p---~~------~~~~~d~~~~~~~~~evl~~L~~lle  458 (976)
T Consensus         1 ~v~~D~ETTGl~~~~~~Iieigav~~~~~~~~~~~-~~~~v~P~~~i~~~~~~i~GIt~~~l~~~~~~~~~~~~~~~~l~   79 (162)
T pfam00929         1 LVVIDCETTGLDPEKDRIIEIAAVSIVGGENIGPV-FDTYVKPERLITDEATKFHGITPEMLRNAPSFEEVLEAFLEFLK   79 (162)
T ss_pred             CEEEEEECCCCCCCCCEEEEEEEEEEECCEEEEEE-EEEEECCCCCCCHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHC
T ss_conf             98999868999899975899999999999776555-67877788888999998739787775415311779999999842


Q ss_pred             CCCCHHHHCCCCHHHHHHHH----CCCCC----CCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             22100110032123788986----18866----64210023455431687667724667762244422335654322210
Q gi|254780277|r  459 NEHFLKIGHNIKYDKLVLHR----YGISM----RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI  530 (976)
Q Consensus       459 ~~~i~kIgHN~KfD~~~L~~----~GI~l----~~i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~  530 (976)
T Consensus        80 ~~~~-~v~~n~~fD~~~l~~~~~~~~~~~~~~~~~~~dt~~~~~~~~~~~~~~~L~~l~~~~~i~~~-------------  145 (162)
T pfam00929        80 KLKI-LVGHNASFDVGFLLYDDLRFLKLPHPKLNDVIDTLILDKATYKGFKRRSLDALAEKLGLEKI-------------  145 (162)
T ss_pred             CCCE-EECCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCC-------------
T ss_conf             5857-77788778999999999985863366333304489999997504467998999988599998-------------


Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             00000123333222111112456
Q gi|254780277|r  531 DKISDSQVQEHAIENSNVILQLW  553 (976)
Q Consensus       531 ~~i~~e~~~~Yaa~Da~~t~~L~  553 (976)
T Consensus       146 ------~~aH~Al~Da~~t~~lf  162 (162)
T pfam00929       146 ------QRAHRALDDARATAELF  162 (162)
T ss_pred             ------CCCCCHHHHHHHHHHHC
T ss_conf             ------88678299999999879