HHsearch alignment for GI: 254780277 and conserved domain: pfam00940
>pfam00940 RNA_pol DNA-dependent RNA polymerase. This is a family of single chain RNA polymerases.
Probab=96.61 E-value=0.023 Score=35.78 Aligned_cols=145 Identities=14% Similarity=0.211 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHCC-------CC------HHH----HHHHHHHHHHHCHHH---HHHHHHHHHHHHHCC
Q ss_conf 8630251356440777035678819-------99------899----999999999988889---999999999999849
Q gi|254780277|r 798 RRHAKTINFSIIYGISPFRLATQLR-------IP------RSE----AADYIKRYFHRFPGI---HEYIEKTKNFVRQNG 857 (976)
Q Consensus 798 R~~aK~infgi~YG~~~~~La~~l~-------is------~~e----A~~~i~~yf~~~p~v---~~~~~~~~~~a~~~g 857 (976)
T Consensus 156 Rk~vKr~vMT~~Yg~t~~g~~~qi~~~l~~~~~~~~~~~~~~~~~yla~~i~~si~~v~~~a~~~m~wL~~~a~~~~~~~ 235 (391)
T pfam00940 156 RKVVKQTVMTLVYGVTFYGAREQIKDQLKEKGTDESKVLSYKAANYLAKIIFEAIKEVFPGAREIMDWLNECAKLIAKLN 235 (391)
T ss_pred HHHHHCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 86640321664226662009999999998436873145678999999999999999985749999999999999998289
Q ss_pred C-E--ECCCC---------------------CEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8-8--82778---------------------7601898758837888778787701345653899999999999999986
Q gi|254780277|r 858 Y-V--ETIFG---------------------RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 (976)
Q Consensus 858 y-v--~T~~G---------------------Rrr~~p~i~s~~~~~r~~aeR~a~N~~iQGsaAdi~k~am~~i~~~~~~ 913 (976)
T Consensus 236 ~pv~W~TP~Gf~V~Q~Y~k~~~~~V~t~l~~~~~~~~~~~~~~~d~~Kq~~a~~PNfIHSlDAshl~~t~~-----~~~~ 310 (391)
T pfam00940 236 IPVVWTTPLGLPVVQPYRKSKKKRVKTSLQGVSRIKVITLTPVSDKRKQKSAFPPNFIHSLDASHLMLTAL-----ACIK 310 (391)
T ss_pred CCEEEECCCCCEEEEEECCCCCEEEEEEECCEEEECCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHH-----HHHH
T ss_conf 96599999999898641688757999861566886135666656756542367974133344899999999-----9985
Q ss_pred CCCCEEEEEEECCEEEEECCHHHHHHHHHHHHHHHHHCC
Q ss_conf 599818999726389995598799999999999965101
Q gi|254780277|r 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 (976)
Q Consensus 914 ~~~~~~~ilqVHDElv~ev~~~~~~~~~~~~~~~Me~~~ 952 (976)
T Consensus 311 ~gi~---f~~IHDsf~--tha~d~~~l~~~iRe~Fv~ly 344 (391)
T pfam00940 311 AGIP---FASVHDSFW--THANDVDKMNKLLREQFVELY 344 (391)
T ss_pred CCCC---EEEEEECCC--CCCCCHHHHHHHHHHHHHHHH
T ss_conf 6998---788710788--772149999999999999996