HHsearch alignment for GI: 254780277 and conserved domain: pfam02739
>pfam02739 5_3_exonuc_N 5'-3' exonuclease, N-terminal resolvase-like domain.
Probab=100.00 E-value=0 Score=391.48 Aligned_cols=164 Identities=46% Similarity=0.725 Sum_probs=153.6
Q ss_pred CEEEEEECCHHHHHHHHCCCC-CCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHCCHHHHCC
Q ss_conf 728999662699988742675-4468988550069999999999999848554798799997274887132408652166
Q gi|254780277|r 5 NHLFLVDGSSFIYRAFYATPL-LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKAN 83 (976)
Q Consensus 5 ~~~~liDg~~~~~ra~~a~p~-~~~~~~G~~t~ai~gf~~~l~~~i~~~~~~~~~~~~~v~fD~~~~tfR~~~~~~YKa~ 83 (976)
T Consensus 1 KklllIDg~~l~~Ray~a~p~~~l~~~~G~pt~ai~gf~~~l~~li~~~~p~----~i~v~fD~~~~t~R~elyp~YKa~ 76 (169)
T pfam02739 1 KKLLLIDGSSLAFRAFFALPKVPLTNSKGEPTNAVYGFLRMLLKLLKEEKPT----YVAVVFDAGAPTFRHELYEEYKAN 76 (169)
T ss_pred CEEEEEECCHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCCCC----EEEEEECCCCCCCHHHHHHHHHCC
T ss_conf 9699991649999999728878773899988028999999999999974997----699996599997278879988619
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCEEHHHHHHHHHHHHHHCCCCEEEECCCCHHHEECCCCEEEEECCCC---
Q ss_conf 79879758864899999999709979956890166589999999984899499986870121223797599966788---
Q gi|254780277|r 84 RPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--- 160 (976)
Q Consensus 84 R~~~p~~l~~q~~~i~~~l~~~gi~~~~~~~~EADDviatla~~~~~~~~~v~i~s~DkD~~Qlv~~~v~~~~~~~~--- 160 (976)
T Consensus 77 R~~~p~~l~~Q~~~i~~~l~~~gi~~~~~~g~EADDvIatla~~~~~~~~~v~I~S~DkDl~QLv~~~~~V~~~~~~~~~ 156 (169)
T pfam02739 77 RAKTPDELPPQIPLIKELLDALGIPVLEVPGYEADDVIGTLAKKAEKEGYDVRIVSGDKDLLQLVSDKVNVAVLNPGRTE 156 (169)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCCCCEEEEECCCCCC
T ss_conf 99993789999999999987501447852485315679999999985899199988999858853299039994189977
Q ss_pred -CEECHHHHHHHH
Q ss_conf -353899998884
Q gi|254780277|r 161 -EKIDIEHVIKKW 172 (976)
Q Consensus 161 -~~~~~~~v~~~~ 172 (976)
T Consensus 157 ~~~~~~~~v~ek~ 169 (169)
T pfam02739 157 FTLYTPEEVVEKY 169 (169)
T ss_pred CEEECHHHHHCCC
T ss_conf 7798889972149