HHsearch alignment for GI: 254780277 and conserved domain: smart00279
>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs.
Probab=99.31 E-value=1.1e-12 Score=111.20 Aligned_cols=36 Identities=53% Similarity=0.854 Sum_probs=35.2
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 878777787518743589987763602499898413
Q gi|254780277|r 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211 (976)
Q Consensus 176 p~~~~d~~al~GD~sDnipGv~GiG~KtA~~ll~~~ 211 (976)
T Consensus 1 p~q~~d~~~L~GD~sDnipGV~GIG~ktA~~ll~~~ 36 (36)
T smart00279 1 PEQLIDYAILVGDYSDNIPGVKGIGPKTALKLLREF 36 (36)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 907889999818764688999974789999999859