HHsearch alignment for GI: 254780277 and conserved domain: smart00474
>smart00474 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proofreading domain present in DNA polymerase I, Werner syndrome helicase, RNase D and other enzymes
Probab=99.92 E-value=9.4e-25 Score=199.14 Aligned_cols=170 Identities=25% Similarity=0.405 Sum_probs=142.7
Q ss_pred EEECCHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHH
Q ss_conf 3547999999999999866-852323322243311001244201025776654434550231374433345650017889
Q gi|254780277|r 369 TKIVNTKDIQQWVQKLETI-GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447 (976)
Q Consensus 369 ~~I~~~~~L~~li~~L~~~-~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~~ 447 (976)
T Consensus 2 ~~i~~~~~l~~~~~~l~~~~~~i~~DtE~~~~~~~~~~l~~iql~~~~~---------~~yi~~~~~~-----------~ 61 (172)
T smart00474 2 RVVTDSETLEELLEKLRAAGGEVALDTETTGLNSYSGKLVLIQISVTGE---------GAFIIDPLAL-----------G 61 (172)
T ss_pred EEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEEEEEEEECCC---------EEEEEECCCC-----------H
T ss_conf 6989899999999999842995999883068853787589999996898---------4899701224-----------2
Q ss_pred HHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99974444202221001100321237889861886664210023455431687667724667762244422335654322
Q gi|254780277|r 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527 (976)
Q Consensus 448 evl~~L~~lle~~~i~kIgHN~KfD~~~L~~~GI~l~~i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~ 527 (976)
T Consensus 62 ~~~~~l~~ll~~~~i~kv~hn~k~D~~~L~~~gi~l~~v~Dt~ia~~l~~~~~~~~~L~~l~~~~~~~~l~k~---~~~~ 138 (172)
T smart00474 62 DDLEILKDLLEDETITKVGHNAKFDLHVLARFGIELENIFDTMLAAYLLLGGPSKHGLATLLKEYLGVELDKE---EQKS 138 (172)
T ss_pred HHHHHHHHHHCCCCCCEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCEECCCC---CCCC
T ss_conf 1799999998099985999745999999997798567524679987750579864899999999749231555---5646
Q ss_pred CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2100000012333322211111245677632221
Q gi|254780277|r 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561 (976)
Q Consensus 528 ~~~~~i~~e~~~~Yaa~Da~~t~~L~~~l~~~L~ 561 (976)
T Consensus 139 ~w~~rpl~~~~~~YAa~Da~~~~~l~~~l~~~L~ 172 (172)
T smart00474 139 DWGARPLSEEQLQYAAEDADALLRLYEKLEKELE 172 (172)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6678999099999999999999999999999729