HHsearch alignment for GI: 254780277 and conserved domain: smart00486

>smart00486 POLBc DNA polymerase type-B family. DNA polymerase alpha, delta, epsilon and zeta chain (eukaryota), DNA polymerases in archaea, DNA polymerase II in e. coli, mitochondrial DNA polymerases and and virus DNA polymerases
Probab=95.25  E-value=0.062  Score=32.70  Aligned_cols=165  Identities=18%  Similarity=0.170  Sum_probs=70.2

Q ss_pred             CCCCCCCCCCCCC-----CC--CCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCC-CCHHHHHHHHHHHHC-
Q ss_conf             8523233222433-----11--00124420102577665443455023137443334565001-788999974444202-
Q gi|254780277|r  388 GSASFKIITDTMD-----AF--HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN-TLTKEILSYLKKFFE-  458 (976)
Q Consensus       388 ~~ia~DtETt~ld-----~~--~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~-~~~~evl~~L~~lle-  458 (976)
T Consensus         4 ~i~s~DIEt~~~~~~~p~~~~~~d~i~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~E~~ll~~f~~~i~~   82 (471)
T smart00486        4 KILSFDIETYTDGGLFPDPLIFEDEIIQISLVINDGDKKGPEER-ICFTLGTCKEIDGVEVYEFNNEKELLKAFLEFIKK   82 (471)
T ss_pred             EEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEE-EEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHHH
T ss_conf             69999989667999999988899849999999821987878877-54303676778998899809999999999999987


Q ss_pred             -CCCCHHHHCCC-CHHHHHHHH----CCCCCC---------------------------------C--CCCHHHHHHHHC
Q ss_conf             -22100110032-123788986----188666---------------------------------4--210023455431
Q gi|254780277|r  459 -NEHFLKIGHNI-KYDKLVLHR----YGISMR---------------------------------G--FEDIMLMSYVLD  497 (976)
Q Consensus       459 -~~~i~kIgHN~-KfD~~~L~~----~GI~l~---------------------------------~--i~DTmlaayLLd  497 (976)
T Consensus        83 ~dpd-ii~g~N~~~FD~~yi~~R~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~D~~~~~~~-~  160 (471)
T smart00486       83 YDPD-IIYGHNISNFDLPYIISRLEKLKIKPLSFIGRLKNIIDIKRKKPLFGSKSFGKTIKVKIKGRLVIDLYNLYKN-K  160 (471)
T ss_pred             CCCC-EEEECCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEEEEEEHHHHHHH-H
T ss_conf             1999-9996588787689999999984896477637357787643203321012566314899855999788999988-6


Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHH--HCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68766772466776224442233565432221000--000123333222111112456776
Q gi|254780277|r  498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK--ISDSQVQEHAIENSNVILQLWLLL  556 (976)
Q Consensus       498 p~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~~~--i~~e~~~~Yaa~Da~~t~~L~~~l  556 (976)
T Consensus       161 ~~l~sy~L~~v~~~~l~~~k~d~~~~~i~~-~~~~~~~~~~~~~~Y~~~D~~l~~~l~~~~  220 (471)
T smart00486      161 LKLPSYKLDTVAEYLLGKEKDDLPYKDIPE-LYNLNYKLRDELLEYCIQDAVLTLKLFNKL  220 (471)
T ss_pred             HCCCCCCHHHHHHHHHCCCCCCCCHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             044668889999999577888899899999-985393679999999999999999999986