HHsearch alignment for GI: 254780277 and conserved domain: smart00486
>smart00486 POLBc DNA polymerase type-B family. DNA polymerase alpha, delta, epsilon and zeta chain (eukaryota), DNA polymerases in archaea, DNA polymerase II in e. coli, mitochondrial DNA polymerases and and virus DNA polymerases
Probab=95.25 E-value=0.062 Score=32.70 Aligned_cols=165 Identities=18% Similarity=0.170 Sum_probs=70.2
Q ss_pred CCCCCCCCCCCCC-----CC--CCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCC-CCHHHHHHHHHHHHC-
Q ss_conf 8523233222433-----11--00124420102577665443455023137443334565001-788999974444202-
Q gi|254780277|r 388 GSASFKIITDTMD-----AF--HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKN-TLTKEILSYLKKFFE- 458 (976)
Q Consensus 388 ~~ia~DtETt~ld-----~~--~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~-~~~~evl~~L~~lle- 458 (976)
T Consensus 4 ~i~s~DIEt~~~~~~~p~~~~~~d~i~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~E~~ll~~f~~~i~~ 82 (471)
T smart00486 4 KILSFDIETYTDGGLFPDPLIFEDEIIQISLVINDGDKKGPEER-ICFTLGTCKEIDGVEVYEFNNEKELLKAFLEFIKK 82 (471)
T ss_pred EEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCEEEEEEE-EEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHHH
T ss_conf 69999989667999999988899849999999821987878877-54303676778998899809999999999999987
Q ss_pred -CCCCHHHHCCC-CHHHHHHHH----CCCCCC---------------------------------C--CCCHHHHHHHHC
Q ss_conf -22100110032-123788986----188666---------------------------------4--210023455431
Q gi|254780277|r 459 -NEHFLKIGHNI-KYDKLVLHR----YGISMR---------------------------------G--FEDIMLMSYVLD 497 (976)
Q Consensus 459 -~~~i~kIgHN~-KfD~~~L~~----~GI~l~---------------------------------~--i~DTmlaayLLd 497 (976)
T Consensus 83 ~dpd-ii~g~N~~~FD~~yi~~R~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~D~~~~~~~-~ 160 (471)
T smart00486 83 YDPD-IIYGHNISNFDLPYIISRLEKLKIKPLSFIGRLKNIIDIKRKKPLFGSKSFGKTIKVKIKGRLVIDLYNLYKN-K 160 (471)
T ss_pred CCCC-EEEECCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEEEEEEHHHHHHH-H
T ss_conf 1999-9996588787689999999984896477637357787643203321012566314899855999788999988-6
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHH--HCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68766772466776224442233565432221000--000123333222111112456776
Q gi|254780277|r 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK--ISDSQVQEHAIENSNVILQLWLLL 556 (976)
Q Consensus 498 p~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~~~--i~~e~~~~Yaa~Da~~t~~L~~~l 556 (976)
T Consensus 161 ~~l~sy~L~~v~~~~l~~~k~d~~~~~i~~-~~~~~~~~~~~~~~Y~~~D~~l~~~l~~~~ 220 (471)
T smart00486 161 LKLPSYKLDTVAEYLLGKEKDDLPYKDIPE-LYNLNYKLRDELLEYCIQDAVLTLKLFNKL 220 (471)
T ss_pred HCCCCCCHHHHHHHHHCCCCCCCCHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 044668889999999577888899899999-985393679999999999999999999986