BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] (976 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 2008 bits (5203), Expect = 0.0, Method: Compositional matrix adjust. Identities = 976/976 (100%), Positives = 976/976 (100%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH Sbjct: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI Sbjct: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV Sbjct: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA Sbjct: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE Sbjct: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ Sbjct: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT Sbjct: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG Sbjct: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE Sbjct: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA Sbjct: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI Sbjct: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL Sbjct: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM Sbjct: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP Sbjct: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT Sbjct: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV Sbjct: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 Query: 961 PLKVNIKVSNNWQEEN 976 PLKVNIKVSNNWQEEN Sbjct: 961 PLKVNIKVSNNWQEEN 976 >gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 727 Score = 1076 bits (2783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 537/733 (73%), Positives = 613/733 (83%), Gaps = 19/733 (2%) Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308 LRTDVPITIPL+HLILEDCNGP+LI+FLKALEFT+L RVA +CDA NIE LD Sbjct: 3 LRTDVPITIPLDHLILEDCNGPQLITFLKALEFTRLTKRVAAFCNCDAENIESADLDSK- 61 Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368 I+ E + + K +Q ++LS+ I S+ +PQ FLER + L+Q I N SY Sbjct: 62 -------IDIETSQPKSPKENQSATLSEN---IISKNSPQHFFLERTKLLTQSQIKNHSY 111 Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428 +I N KD+++W+Q LE GSASF IITDT+DAF+SKPI IA S L+Q+D + K+ETI Sbjct: 112 IRIRNIKDLKKWLQILENTGSASFTIITDTVDAFNSKPIGIAFSILNQEDASLLKIETIV 171 Query: 429 IDL-----SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 IDL S S K+ T+EILSYLKK FENEH LKIGHNIKYDKLVL RYGI + Sbjct: 172 IDLPLIIDSSLEENMSPEKSISTEEILSYLKKIFENEHLLKIGHNIKYDKLVLQRYGIII 231 Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540 RGFEDIMLMSYVLDSGR SHDIA+IA+KWL Y TRKE+LK+ K SI ID+IS+S++QE Sbjct: 232 RGFEDIMLMSYVLDSGRYSHDIANIAKKWLFYDLITRKEMLKTGKRSISIDQISNSRIQE 291 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 + +E SNVILQLWLLLR KLI EKLLHVYERLDKPMID+V+QME TGIQID+ LL QVS+ Sbjct: 292 YVVEKSNVILQLWLLLRAKLIAEKLLHVYERLDKPMIDIVAQMETTGIQIDRQLLAQVSS 351 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 EISK+LL LEE I++L+GEKFN+SSPKQLGDILFTKLKFP G KTK GQWKTTAQDLEQI Sbjct: 352 EISKDLLCLEEKIHNLAGEKFNISSPKQLGDILFTKLKFPGGTKTKKGQWKTTAQDLEQI 411 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 NC DN +I++ILEWR+ SKIKSTYADSLPNHIN+RTQRVHTFYSLASTMTGRLASLEPNL Sbjct: 412 NCQDNILIEHILEWRRFSKIKSTYADSLPNHINQRTQRVHTFYSLASTMTGRLASLEPNL 471 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIP+KT+LG+KIRRAFI+PPTKKLISADYSQIELRILAH+A+I PLYQ F+NSLDIH + Sbjct: 472 QNIPVKTNLGKKIRRAFIAPPTKKLISADYSQIELRILAHVAQINPLYQAFKNSLDIHTL 531 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 VA+EIFGV IE+VS MR+HAKTINFSIIYGISPFRLA QL+I RSEA DYI+RYF RFP Sbjct: 532 VASEIFGVKIEEVSSHMRQHAKTINFSIIYGISPFRLANQLKIKRSEATDYIQRYFDRFP 591 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 GIHEYIEKTKNF R+N YVETIFGRRI+YDEINSPK SIRN+NERAAINAPIQGSAADIT Sbjct: 592 GIHEYIEKTKNFARKNSYVETIFGRRIYYDEINSPKVSIRNLNERAAINAPIQGSAADIT 651 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 RRAMI VHKS+E HKL+TKMLLQIHDELVFE PEEEI + II SME ACLPKINLRV Sbjct: 652 RRAMILVHKSIECHKLSTKMLLQIHDELVFEAPEEEIEQVTNIITESMENACLPKINLRV 711 Query: 961 PLKVNIKVSNNWQ 973 PLKV+IKVS+NW+ Sbjct: 712 PLKVDIKVSDNWE 724 >gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] Length = 998 Score = 1025 bits (2650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/999 (50%), Positives = 681/999 (68%), Gaps = 28/999 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS FI+RAF+A P L+RK DGLPVNA++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNMLWKLLKDARNTDVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFRNE+Y YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRNELYDLYKANRSAPPEDLVPQFGLIREATRAFNLPCIETEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DDIIATY AE G VTIIS+DKDLMQLV+ +YD +K+++I + VI+KWG+ PE Sbjct: 121 DDIIATYARQAEAIGADVTIISSDKDLMQLVTANVHMYDAMKDKQIGVPDVIEKWGVGPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L A IKQ+KRRENI+ A Sbjct: 181 KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRENIIANA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E ARLSR+LV LRTDVP+ LE L+LE NGP+LI+FLKA+EFT L RVA D DA+ Sbjct: 241 ELARLSRQLVALRTDVPLEQSLEELVLEPQNGPKLIAFLKAMEFTTLTRRVAEATDSDAS 300 Query: 298 NIEPVVL------DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351 I+P + D + + A D S+++ I TP L Sbjct: 301 AIDPANVPVQWGADAHGPDLDAPAAAMAGDVSAEGNNRPASAVAPAKRMIGEGSTPADLT 360 Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411 R + I+ +YT I + + W+ G +F T ++D ++ + ++ Sbjct: 361 TARQALFAATKIDTTAYTAIRDIATLDLWIAAAREAGVVAFDTETTSLDPMQAELVGFSL 420 Query: 412 STLDQ-KDDTSFKVETIFIDLSVHTSQDSTGKNTLT------------KEILSYLKKFFE 458 + D KD + + ++ L T + +G + + E L LK E Sbjct: 421 AIADNGKDASGTDIRAAYVPL---THKTGSGGDLFSDGIKLAEGQAPFAEALERLKDLLE 477 Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT-- 516 +E LK+ N+KYD L++ R+G+ MR F+D ML+SYVL++G+++H + +++++WL +T Sbjct: 478 DEAVLKVAQNLKYDYLLMKRHGVVMRSFDDTMLISYVLEAGKTTHGMDTLSERWLGHTPI 537 Query: 517 -RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K++ S KSSI D ++ + +A E+++V L+LW+ L+P+L+ E+L VYERL++P Sbjct: 538 AYKDVTGSGKSSITFDFVNIDKATAYAAEDADVTLRLWMALKPRLVSERLTKVYERLERP 597 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 ++ V++ ME GI +D+ +L ++S E+++ S EE IY+L+GE+FN+ SPKQLGDILF Sbjct: 598 LVPVLAHMEERGITVDRQILSRLSGELAQKAASFEEEIYELAGERFNIGSPKQLGDILFG 657 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 ++ P G+KTKTGQW T+AQ LE + + + I++WRQL+K+KSTY D+LP++I+ Sbjct: 658 RMGLPGGSKTKTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPSYIHPE 717 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T+RVHT Y+LAST TGRL+S EPNLQNIP++T G+KIR AFIS P KL+SADYSQIEL Sbjct: 718 TKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIEL 777 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 R+LAH+A I L FEN +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F Sbjct: 778 RVLAHVADIPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAF 837 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA QL I RSEA DYIK+YF RFPGI +Y+E TK F R+NGYVETIFGRR HY EI S Sbjct: 838 GLANQLSIARSEAGDYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSS 897 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 S++ NERAAINAPIQGSAADI RRAMI + +LE KL+ +MLLQ+HDEL+FEV E Sbjct: 898 NPSVKAFNERAAINAPIQGSAADIIRRAMIRIEPALEAEKLSARMLLQVHDELIFEVEEA 957 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EI ++V ME A +P I++RVPLKV+ + ++NW E Sbjct: 958 EIEKTLPVVVSVMEDAAMPAISMRVPLKVDARAADNWDE 996 >gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4] gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4] Length = 992 Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 495/994 (49%), Positives = 681/994 (68%), Gaps = 24/994 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNM+WKLL +R S+ Sbjct: 1 MKKGDHLFLVDGSGFIFRAFHALPALTRKSDGLPVGAVSGFCNMMWKLLTEARDTSVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AVIFDY + TFR ++YP+YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHLAVIFDYSSKTFRKDLYPEYKANRSAPPEDLVPQFGLIRQATRAFNLPCIETEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DDIIATY AE G VTI+S+DKDLMQLV+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDIIATYARAAEAIGADVTIVSSDKDLMQLVTANVHMYDSMKDKQIGIPDVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DNIPGIPGIG KTAA LL+EYG+L+ ++ AS IKQ KRRENIL A Sbjct: 181 KMIDLQSLTGDSTDNIPGIPGIGPKTAAQLLEEYGDLDTLMARASEIKQNKRRENILAGA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E +LSR+LV LRTDVP+ +PL+ L+LE +GP+L++FLKA+EFT L RVA DCDA Sbjct: 241 ELVKLSRQLVTLRTDVPLDMPLDALMLEKQDGPKLVAFLKAMEFTSLTRRVADNCDCDAG 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKT---SQFSSLSDQTSKINSEQTPQKLFLER 354 IEP + + E A ++D +T Q + + Q++K TP L R Sbjct: 301 AIEPATISV---EWGASARGPDLDAGAAAQTPASGQEAGPTAQSAKAEG-ATPADLAAAR 356 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 PI+ +Y I + ++ W+ G +F T ++D + + ++++ Sbjct: 357 QSAFGGQPIDRSAYVTIRDLPTLEGWIAAAREAGFVAFDTETTSLDPMQADLVGVSLALQ 416 Query: 415 DQK-DDTSFKVETIFIDLSVHTSQD---STGKNTLTKEI-----LSYLKKFFENEHFLKI 465 D + + ++ L T +D S G +I L+ LK E+ LK+ Sbjct: 417 DNAASPGAATIRAAYVPLGHKTGRDDLFSDGLKLAENQIPMDAALTALKGLLEDASVLKV 476 Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILK 522 N+KYD LV+ R+GI +RGF+D ML+SYVL++G +H + S++++WL +T KE+ Sbjct: 477 AQNLKYDYLVMKRHGIVIRGFDDTMLLSYVLEAGVGAHGMDSLSERWLGHTPIPYKEVAG 536 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 S KS + D + + +A E+++V L+LWL+L+P+L L VYERL++P++ V++ Sbjct: 537 SGKSLVTFDLVDIDKATAYAAEDADVTLRLWLVLKPRLAAVGLARVYERLERPLVPVLAD 596 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI ID+ +L ++S E+++ + E+ IY+L+GE+FN+ SPKQLGDILF ++ P G Sbjct: 597 MEERGITIDRQILSRLSGELAQKAAAFEDEIYELAGERFNVGSPKQLGDILFGRMNLPGG 656 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 +KTKTGQW T+AQ LE + P+ + I++WRQL+K+KSTY D+LP +++ +T+RVHT Sbjct: 657 SKTKTGQWSTSAQVLEDLAAQGEPLPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTS 716 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 YS+A+T TGRL+S EPNLQNIP++T G+KIR AFIS P KL+SADYSQIELR+LAH+A Sbjct: 717 YSMAATTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVA 776 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 I L Q F + +DIH M A+E+FGV ++ + ++RR AK INF IIYGIS F LA QL Sbjct: 777 DIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEVRRRAKAINFGIIYGISAFGLANQLS 836 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 I R+EA +YIK+YF RFPGI +Y+E TK FVR++GYVETIFGRR HY EI S S+R Sbjct: 837 IERAEAGEYIKKYFERFPGIKDYMESTKAFVREHGYVETIFGRRAHYPEIKSSNPSMRAF 896 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEEITTA 940 NERAAINAPIQGSAAD+ RRAM+ V +L L T+MLLQ+HDEL+FEV +E I A Sbjct: 897 NERAAINAPIQGSAADVIRRAMVQVEPALAKAGLGEKTRMLLQVHDELIFEVEDEAIEAA 956 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +IV +ME A +P I +RVPLKV+ + ++NW E Sbjct: 957 LPVIVSTMENAAMPAIAMRVPLKVDARAADNWDE 990 >gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3] gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3] Length = 995 Score = 1016 bits (2628), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/996 (49%), Positives = 681/996 (68%), Gaps = 25/996 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS FI+RAF+A P L+RK DGLPVNA++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNMLWKLLKDARNTDVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFRNE+Y YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRNELYDLYKANRTAPPEDLVPQFGLIREATRAFNLPCIETEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DDIIATY AE G VTIIS+DKDLMQLV+ +YD +K+++I + V++KWG+ PE Sbjct: 121 DDIIATYARQAEAIGADVTIISSDKDLMQLVTANVHMYDAMKDKQIGVPDVVEKWGVAPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L A IKQ+KRRENI+ A Sbjct: 181 KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRENIIANA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + ARLSR+LV LRTDVP+ LE L+LE NGP+LI+FLKA+EFT L RVA D DA+ Sbjct: 241 DLARLSRQLVALRTDVPLEQSLEELVLEPQNGPKLIAFLKAMEFTTLTRRVAEATDSDAS 300 Query: 298 NIEP--VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT-PQKLFLER 354 IE V + + KT+ +S + K+ E + P L R Sbjct: 301 AIEAANVPVQWGADAHGPDLDAAPAVAAADDKTAVPASTNAPARKVTGEGSAPTDLATAR 360 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 S I+ +YT I + ++ +WV G +F T ++D ++ + +++ Sbjct: 361 QTVFSAAKIDTTAYTTIRDLAELDRWVAAARETGVVAFDTETTSLDPMQAELVGFSLAIA 420 Query: 415 DQ-KDDTSFKVETIFIDLSVHTSQDSTGKNTLT------------KEILSYLKKFFENEH 461 D KD + + ++ L T + +G + + E L+ LK E+E Sbjct: 421 DNGKDASGTDIRAAYVPL---THKTGSGGDLFSDGIRLAEGQVPFAEALARLKDLLEDEA 477 Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RK 518 LKI N+KYD L++ R+G+ M+ F+D ML+SYVL++G+++H + +++++WL +T K Sbjct: 478 VLKIAQNLKYDYLLMKRHGVVMQSFDDTMLISYVLEAGKTTHGMDTLSERWLGHTPIAYK 537 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 ++ S KSSI D + + +A E+++V L+LW++L+P+L E+L VYERL++P++ Sbjct: 538 DVAGSGKSSITFDFVDIDKATAYAAEDADVTLRLWMVLKPRLAAERLTSVYERLERPLVP 597 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V++ ME GI +D+ +L ++S E+++ + EE +Y L+GE+FN+ SPKQLGDILF ++ Sbjct: 598 VLAHMEERGITVDRQILSRLSGELAQKAAAFEEEVYQLAGERFNIGSPKQLGDILFGRMG 657 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P G+KTKTGQW T+AQ LE + + + I++WRQL+K+KSTY D+LP +++ +T+R Sbjct: 658 LPGGSKTKTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDALPGYVHPQTKR 717 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT Y+LAST TGRL+S EPNLQNIP++T G+KIR AFIS P KL+SADYSQIELR+L Sbjct: 718 VHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSADYSQIELRVL 777 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH+A I L FEN +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA Sbjct: 778 AHVADIPQLRSAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLA 837 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL I RSEA +YIK+YF RFPGI +Y+E TK F R+NGYVETIFGRR HY EI S S Sbjct: 838 NQLSIARSEAGEYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSSNPS 897 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 ++ NERAAINAPIQGSAADI RRAM+ + LE KL+ +MLLQ+HDEL+FEV E EI Sbjct: 898 MKAFNERAAINAPIQGSAADIIRRAMVRIEPVLEAEKLSARMLLQVHDELIFEVEEGEIE 957 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I+V ME A +P I++RVPLKV+ + ++NW E Sbjct: 958 KTLPIVVSVMENAAMPAISMRVPLKVDARAADNWDE 993 >gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] Length = 978 Score = 1007 bits (2604), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/986 (48%), Positives = 681/986 (69%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH +A ++++WL +T K++ S KS++ Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMAPLSERWLGHTPIAYKDVAGSGKSAV 530 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+++ I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 651 QWSTSAQVLEDLAAEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRTHYPDIRASNPQVRAFNERAAI 890 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976 >gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13] gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653] gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653] Length = 978 Score = 1006 bits (2602), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/987 (49%), Positives = 681/987 (68%), Gaps = 24/987 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS-KINSEQTPQKLFLERLQ 356 ++EP ++ T+ A ++D + LS T+ + + TP+ L R Sbjct: 301 SVEPCHVE---TDWGADAHGPDVDVPEKADAAASQPLSAPTAAEPDQGYTPKALAERRAV 357 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 + + I+ +Y I + ++QW+ + G +F T ++D ++ + +++ Sbjct: 358 QATAQKIDTSAYVCIRDIATLEQWLAEAAETGVLAFDTETTSLDPMQAELVGFSLALAPG 417 Query: 417 KDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIK 470 K ++ L + + D G + +I L+ LK E+ LKI N+K Sbjct: 418 K--------AAYVPLQHKSGAGDLLGGGMVENQIPLDAALAALKHVLEDASILKIAQNMK 469 Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSS 527 YD LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS+ Sbjct: 470 YDWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMNPLSERWLGHTPIAYKDVAGSGKSA 529 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 + D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME G Sbjct: 530 VTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERG 589 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKT Sbjct: 590 IAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKT 649 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AS Sbjct: 650 GQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAS 709 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 710 TSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQL 769 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR E Sbjct: 770 KQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREE 829 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAA Sbjct: 830 AGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAA 889 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ H Sbjct: 890 INAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRHV 949 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A +P ++L VPL+V+ + ++NW E Sbjct: 950 MENAAMPAVSLAVPLRVDARAAHNWDE 976 >gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1] gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1] Length = 978 Score = 1006 bits (2602), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/987 (48%), Positives = 682/987 (69%), Gaps = 24/987 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ + L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKTDVPLDVDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS-KINSEQTPQKLFLERLQ 356 ++EP ++ T+ A ++D + LS T+ + + TP+ L R Sbjct: 301 SVEPCHVE---TDWGADAHGPDVDVPEKADAAASQPLSAPTAAEPDQGYTPKALAERRAA 357 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 + + I+ +Y I + ++QW+ + G +F T ++D ++ + +++ Sbjct: 358 QATAQKIDTSAYVCIRDIATLEQWLAEAAETGVLAFDTETTSLDPMQAELVGFSLALAPG 417 Query: 417 KDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIK 470 K ++ L + + D G + +I L+ LK+ E+ LKI N+K Sbjct: 418 K--------AAYVPLQHKSGAGDLLGGGMVENQIPLDAALAALKRVLEDASILKIAQNMK 469 Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSS 527 YD LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS+ Sbjct: 470 YDWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSA 529 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 + D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME G Sbjct: 530 VTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERG 589 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I +D+ +L ++S ++++ + E+ IY L+GEKF +SSPKQLGDILF K+ P +KTKT Sbjct: 590 IAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTISSPKQLGDILFGKMGLPGASKTKT 649 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AS Sbjct: 650 GQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAS 709 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 710 TSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQL 769 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR E Sbjct: 770 KQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREE 829 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAA Sbjct: 830 AGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAA 889 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ Sbjct: 890 INAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRV 949 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A +P ++L VPL+V+ + ++NW E Sbjct: 950 MENAAMPAVSLAVPLRVDARAAHNWDE 976 >gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13] gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13] Length = 994 Score = 1006 bits (2602), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/987 (49%), Positives = 681/987 (68%), Gaps = 24/987 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 17 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 77 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS-KINSEQTPQKLFLERLQ 356 ++EP ++ T+ A ++D + LS T+ + + TP+ L R Sbjct: 317 SVEPCHVE---TDWGADAHGPDVDVPEKADAAASQPLSAPTAAEPDQGYTPKALAERRAV 373 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 + + I+ +Y I + ++QW+ + G +F T ++D ++ + +++ Sbjct: 374 QATAQKIDTSAYVCIRDIATLEQWLAEAAETGVLAFDTETTSLDPMQAELVGFSLALAPG 433 Query: 417 KDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIK 470 K ++ L + + D G + +I L+ LK E+ LKI N+K Sbjct: 434 K--------AAYVPLQHKSGAGDLLGGGMVENQIPLDAALAALKHVLEDASILKIAQNMK 485 Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSS 527 YD LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS+ Sbjct: 486 YDWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMNPLSERWLGHTPIAYKDVAGSGKSA 545 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 + D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME G Sbjct: 546 VTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERG 605 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKT Sbjct: 606 IAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKT 665 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AS Sbjct: 666 GQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAS 725 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 726 TSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQL 785 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR E Sbjct: 786 KQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREE 845 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAA Sbjct: 846 AGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAA 905 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ H Sbjct: 906 INAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRHV 965 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A +P ++L VPL+V+ + ++NW E Sbjct: 966 MENAAMPAVSLAVPLRVDARAAHNWDE 992 >gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419] gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419] Length = 1004 Score = 1006 bits (2600), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/1002 (48%), Positives = 678/1002 (67%), Gaps = 28/1002 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+ +HLFLVDGS FI+RAF+A P L+RK DGLPVNA+AGFCNMLWKLL ++R S+ Sbjct: 1 MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFRN +Y YKANR PE L+PQ L+R AT+AF +P IE +G+EA Sbjct: 61 PTHFAVIFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AE+ G VTI+S+DKDLMQLV+P +YD++K+++I + VI+KWG+PPE Sbjct: 121 DDLIATYARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L A IKQ+KRRE+I+ A Sbjct: 181 KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRESIIANA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 ARLSR+LV L+ D P+ +PL+ +L+ +GP+LI+FLKA+EFT L RVA D DA Sbjct: 241 NLARLSRELVTLKKDTPLDVPLDDFMLDSQDGPKLIAFLKAMEFTTLTRRVAAATDTDAE 300 Query: 298 NIEPVVL-----------DINTTENKGIAIETEIDRDTTIKT----SQFSSLSDQTSKIN 342 +IEP + D++ E G + + + S LS Sbjct: 301 SIEPAHVPVEWGTEARGPDLDVGEAGGPPPSPQSSSAAPPRGNAARAAVSFLSPGQDADA 360 Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402 + TP L R + P ++ +Y I + +++W+ G F + DA Sbjct: 361 TGATPADLAEARAAYFASAPFDHSAYITIRDLASLERWIADAREAGLVGFGTQATSSDAM 420 Query: 403 HSKPIAIAISTLDQKDDTSF-KVETIFIDLS-VHTSQDSTGKNTL-----TKEILSYLKK 455 + + +++ D +D S ++ ++ L+ + + D G + +E LS LK+ Sbjct: 421 RADLVGFSLAIADYANDPSGSRIRAAYVPLAHKNGTGDLLGGGHIDNQIPAREALSRLKE 480 Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515 E+ LK+ N+KY LV+ R+G++M+GF+D ML+SYVLD+G +H + S+A++WL + Sbjct: 481 LLEDPSILKVAQNLKYGYLVMKRHGVTMQGFDDTMLISYVLDAGNGAHGMESLAERWLGH 540 Query: 516 T---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572 T K I S +SS+ ID + + ++ E++++ L+LW +L+P+L L VYERL Sbjct: 541 TPIASKGITGSGRSSLTIDFVDIDKAAAYSAEDADIALRLWHVLKPRLTARGLTRVYERL 600 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 ++P+I V++ ME GI +D+ +L ++S E+++ +LE+ IY L+GE F + SPKQLGDI Sbjct: 601 ERPLISVLAGMEERGIPVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGDI 660 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 LF KL P G+KTKTGQW T+AQ LE + + + + I++WRQL+K+KSTY D+LP + Sbjct: 661 LFGKLGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFV 720 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752 + T+RVHT ++LA+T TGRL+S +PNLQNIPI+T G+KIR AF++ P KL+SADYSQ Sbjct: 721 HPETKRVHTCFALAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYSQ 780 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELR+LAH+A I L Q F + +DIH M A+E+FGV ++ + ++RR AK INF IIYGI Sbjct: 781 IELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPGEIRRRAKAINFGIIYGI 840 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S F LA QL I RSEA DYIKRYF RFPGI +Y+E TK F R+NGYVETIFGRR HY +I Sbjct: 841 SAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKTFARENGYVETIFGRRAHYPDI 900 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 S S+R NERA+INAPIQGSAADI RRAM+ + +LE KL+ +MLLQ+HDEL+FEV Sbjct: 901 RSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFEV 960 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E EI +IV ME A +P +++RVPLKV+ + ++NW E Sbjct: 961 EEGEIERTIPVIVSVMENAAMPALDMRVPLKVDARAAHNWDE 1002 >gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308] gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19] gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA polymerase, family A:5'-3' exonuclease:3'-5' exonuclease:Hel [Brucella melitensis biovar Abortus 2308] gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19] gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] Length = 978 Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/986 (48%), Positives = 680/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+++ I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 651 QWSTSAQVLEDLAAEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRTHYPDIRASNPQVRAFNERAAI 890 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976 >gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] Length = 994 Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/986 (48%), Positives = 680/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 17 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 77 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 375 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 435 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 486 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 487 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 546 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 547 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 606 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 607 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 666 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+++ I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 667 QWSTSAQVLEDLAAEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 726 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 727 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 786 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 787 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 846 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 847 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRTHYPDIRASNPQVRAFNERAAI 906 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 907 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 966 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 967 ENAAMPAVSLAVPLRVDARAAHNWDE 992 >gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] Length = 1000 Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/1001 (49%), Positives = 675/1001 (67%), Gaps = 30/1001 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS FI+RAF+A P L+RK DG+PV A++GFCNMLWKLL ++R S+ Sbjct: 1 MKKGDHLFLVDGSGFIFRAFHALPPLTRKSDGVPVGAVSGFCNMLWKLLTSARDTSVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR +IY YKANR PE L+PQ L+R AT+AF +P IE GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKDIYDAYKANRSAPPEELIPQFGLIRQATRAFNLPCIETDGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DDIIATY AE G VTIIS+DKDLMQLV+P +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDIIATYARQAEATGADVTIISSDKDLMQLVTPMVHMYDSMKDKQIGIPDVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQALTGDS+DN+PGIPGIG KTAA LL+ +G+L+ +L A IKQ+KRRENI+ A Sbjct: 181 KMIDLQALTGDSVDNVPGIPGIGPKTAAQLLETFGDLDTLLARAGEIKQEKRRENIIANA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + AR+SR+LV LRTDVP+ +PL+ L+LE NGP+L+ FLKA+EFT L RVA +CD Sbjct: 241 DLARISRQLVTLRTDVPLELPLDALVLEPQNGPKLVGFLKAMEFTSLTRRVAEACNCDPT 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT----------- 346 IEP D+N E A ++D ++ +++ + + + + Sbjct: 301 AIEPS--DVNV-EWGDTAHGPDLDVGDNVELVAGGTVAAEGASVPAPAVKPRVGVEGLTE 357 Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406 P L R + PI++ Y I + + +W+ G +F T ++D ++ Sbjct: 358 PADLTKARAASFATAPIDHSKYVTIRDVGTLDRWIADARETGIVAFDTETTSLDVMQAEI 417 Query: 407 IAIAISTLDQKDDTS-FKVETIFIDLS-----VHTSQDSTGKNTLT-KEILSYLKKFFEN 459 + +++ D K+D S + ++ L+ N + ++ L LK E+ Sbjct: 418 VGFSLAIADNKNDPSGASIRAAYVPLNHKNGVGDLLGGGLADNQIPLRDALPRLKALLED 477 Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSG-RSSHDIASIAQKWLSY--- 515 LKI N+KYD L++ RYGI +GF+D ML+SYVLD G ++H + S++++WL + Sbjct: 478 TSVLKIAQNLKYDYLLMKRYGIETKGFDDTMLLSYVLDGGANATHGMDSLSERWLGHKPI 537 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K++ S KS+I D + + +A E+++V L+LWL+L+P+L EKL VYERL++P Sbjct: 538 AYKDVAGSGKSNITFDLVDIDRATAYAAEDADVTLRLWLVLKPRLAAEKLATVYERLERP 597 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 ++ V++ ME GI ID+ +L ++S E+++ LE+ IY L+GE+FN+ SPKQLGDILF Sbjct: 598 LVPVLAHMEERGITIDRQILSRLSGELAQGAARLEDEIYTLAGERFNIGSPKQLGDILFG 657 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 K+ G+KTKTGQW T+AQ LE + + + I++WRQL+K+KSTY D+LP +++ Sbjct: 658 KMGLAGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPE 717 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T+RVHT YSLAST TGRL+S EPNLQNIP++T G+KIR AFIS P KLISADYSQIEL Sbjct: 718 TKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIEL 777 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 R+LAH+A I L Q F + +DIH M A+E+FGV IE + ++RR AK INF IIYGIS F Sbjct: 778 RVLAHVANIPQLEQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINFGIIYGISAF 837 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA QL I RSEA DYIKRYF RFPGI +Y+E TK R GYVETIFGRR+H+ EI S Sbjct: 838 GLANQLSIERSEAGDYIKRYFERFPGIRDYMESTKATARDKGYVETIFGRRVHFPEIRSS 897 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVP 933 S+R NERA+INAPIQGSAAD+ RRAMI + +L D L +MLLQ+HDEL+FEV Sbjct: 898 NPSVRAFNERASINAPIQGSAADVIRRAMIKMEPALADAGLGDRVRMLLQVHDELIFEVE 957 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++ ++ +IV ME A +P +N+ VPLKV+ + +NNW E Sbjct: 958 DADVERSTPVIVSVMENAAMPAVNMSVPLKVDARAANNWDE 998 >gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2] gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2] Length = 978 Score = 1004 bits (2596), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/987 (48%), Positives = 680/987 (68%), Gaps = 24/987 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ + L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKTDVPLDVDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERLQ 356 ++EP ++ T+ A ++D + LS T+ + TP+ L R Sbjct: 301 SVEPCHVE---TDWGADAHGPDVDVPEKADAAASQPLSAPTAAGPDQGYTPKALAERRAA 357 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 + + I+ +Y I + ++QW+ + G +F T ++D ++ + +++ Sbjct: 358 QATAQKIDTSAYVCIRDIATLEQWLAEATETGVLAFDTETTSLDPMQAELVGFSLALAPG 417 Query: 417 KDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIK 470 K ++ L + + D G + +I L+ LK+ E+ LKI N+K Sbjct: 418 K--------AAYVPLQHKSGAGDLLGGGMVENQIPLDAALAALKRVLEDASILKIAQNMK 469 Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSS 527 YD LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS+ Sbjct: 470 YDWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSA 529 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 + D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME G Sbjct: 530 VTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERG 589 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKT Sbjct: 590 IAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKT 649 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AS Sbjct: 650 GQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAS 709 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 710 TSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQL 769 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR E Sbjct: 770 KQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREE 829 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAA Sbjct: 830 AGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAA 889 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ Sbjct: 890 INAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRV 949 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A +P ++L VPL+V+ + ++NW E Sbjct: 950 MENAAMPAVSLAVPLRVDARAAHNWDE 976 >gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] Length = 978 Score = 1003 bits (2593), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELRILAH+A I L Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRILAHVADIAQLK 770 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976 >gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M] gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] Length = 994 Score = 1003 bits (2592), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 17 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 77 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 375 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 435 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 486 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 487 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 546 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 547 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 606 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 607 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 666 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 667 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 726 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELRILAH+A I L Sbjct: 727 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRILAHVADIAQLK 786 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 787 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 846 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 847 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 906 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 907 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 966 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 967 ENAAMPAVSLAVPLRVDARAAHNWDE 992 >gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] Length = 976 Score = 1003 bits (2592), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/989 (48%), Positives = 681/989 (68%), Gaps = 30/989 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFRNEIYP+YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRNEIYPEYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY IAE+ G VTI+S+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARIAEQAGGDVTIVSSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + ++SR+LV L+TDVP+ + L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKISRELVTLKTDVPLDVDLDSLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDIN---TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 +EP ++ + + + + D + TS ++ SDQ TP+ L +R Sbjct: 301 AVEPCHVETDWGADAHGPDVDVPAKADNAASQPTSAVAA-SDQG------YTPKALAEKR 353 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 + + I+ +YT I + ++ W+ + G +F T ++D ++ + +++ Sbjct: 354 ATEAAAQTIDTSAYTCIRDIATLKLWLAEAVETGVLAFDTETTSLDPMQAELVGFSLALA 413 Query: 415 DQKDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHN 468 + +I L + + D G + +I L+ LK E+ LKI N Sbjct: 414 PGR--------AAYIPLQHKSGAGDLLGGGMVEGQIPLDEALAALKIVLEDASVLKIAQN 465 Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRK 525 +KYD LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S K Sbjct: 466 MKYDWLVMRRHGINTVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIPYKDVAGSGK 525 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 S++ D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV++ ME Sbjct: 526 SAVSFDMVDLDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLACMEE 585 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 GI +D+ +L ++S ++++ + E+ IY+L+GE+FN+ SPKQLGDILF K+ +KT Sbjct: 586 RGIAVDRQVLSRLSGDLAQAAAAYEDEIYELAGERFNIGSPKQLGDILFGKMSLSGASKT 645 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTGQW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN T+RVHT Y++ Sbjct: 646 KTGQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSYAM 705 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 AST TGRL+S +PNLQNIP++T G+KIR AFI+ P KL+SADYSQIELR+LAH+A I Sbjct: 706 ASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLVSADYSQIELRVLAHVADIA 765 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR Sbjct: 766 QLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPR 825 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA YI+ YF RFPGI +Y+E TK F R+NGYVETIFGRR HY +I + +R NER Sbjct: 826 EEAGQYIRTYFERFPGIKDYMEATKAFARENGYVETIFGRRAHYPDIRASNPQVRAFNER 885 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AAINAPIQGSAADI RRAMI + +L + LA +MLLQ+HDEL+FEVP+ E+ ++ Sbjct: 886 AAINAPIQGSAADIIRRAMIRMEDALAEQNLAARMLLQVHDELIFEVPDNEVEKTIPVVR 945 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 H ME A +P ++L VPL V+ + ++NW E Sbjct: 946 HIMENAAMPAVSLAVPLHVDARAAHNWDE 974 >gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33] gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915] gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99] gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99] gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915] gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99] Length = 978 Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976 >gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33] gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33] gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] Length = 994 Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 17 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 77 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 375 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 435 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 486 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 487 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 546 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 547 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 606 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 607 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 666 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 667 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 726 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 727 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 786 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 787 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 846 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 847 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 906 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 907 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 966 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 967 ENAAMPAVSLAVPLRVDARAAHNWDE 992 >gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026] gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026] Length = 978 Score = 1002 bits (2591), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/986 (48%), Positives = 678/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 301 SVEPCYVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++ + + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 591 AVDRQVLSRLSGDLVQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976 >gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28] gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90] Length = 978 Score = 1002 bits (2590), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTDSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976 >gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1] gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1] Length = 978 Score = 1001 bits (2589), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 359 AIAQKIDPSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976 >gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1] gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1] Length = 994 Score = 1001 bits (2588), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 17 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 77 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 375 AIAQKIDPSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 435 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 486 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 487 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 546 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 547 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 606 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 607 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 666 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 667 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 726 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 727 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 786 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 787 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 846 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 847 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 906 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 907 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 966 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 967 ENAAMPAVSLAVPLRVDARAAHNWDE 992 >gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1] gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94] Length = 978 Score = 1001 bits (2588), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TD+P+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKTDMPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976 >gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94] gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1] gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94] gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1] Length = 994 Score = 1001 bits (2588), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/986 (48%), Positives = 679/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 17 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 77 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TD+P+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 257 DQTKIARELVTLKTDMPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 375 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 435 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 486 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 487 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 546 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 547 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 606 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 607 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 666 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 667 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 726 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 727 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 786 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 787 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 846 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 847 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 906 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 907 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 966 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 967 ENAAMPAVSLAVPLRVDARAAHNWDE 992 >gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513] gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 994 Score = 1001 bits (2588), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/986 (48%), Positives = 678/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 17 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKA R PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 77 PTHFAVIFDYSSKTFRKEIYPDYKATRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 197 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 374 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 375 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 434 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 435 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 486 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 487 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 546 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 547 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 606 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 607 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 666 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 667 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 726 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 727 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 786 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 787 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 846 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 847 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 906 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 907 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 966 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 967 ENAAMPAVSLAVPLRVDARAAHNWDE 992 >gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840] gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840] Length = 978 Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/986 (48%), Positives = 678/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G H + ++++WL +T K++ S KS++ Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGRHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976 >gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 978 Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/986 (48%), Positives = 678/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKA R PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEIYPDYKATRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 418 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976 >gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445] gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445] Length = 978 Score = 998 bits (2581), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/986 (48%), Positives = 677/986 (68%), Gaps = 22/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EI PDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEINPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ SQ S + ++ + TP+ L R + Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTPKALAEGRAAQ 358 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D + + +++ K Sbjct: 359 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQGELVGFSLALAPGK 418 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 419 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 470 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 471 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 530 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 531 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 590 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 591 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 650 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 651 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 710 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 711 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 770 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 771 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 830 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 831 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 890 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 891 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 950 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 951 ENAAMPAVSLAVPLRVDARAAHNWDE 976 >gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330] gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365] gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40] gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330] gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365] gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40] Length = 979 Score = 998 bits (2579), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/986 (48%), Positives = 677/986 (68%), Gaps = 21/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ +Q+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDVQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ + + ++ + TP+ L R + Sbjct: 301 SVEPCHVETDWGADAH-GPDVDVPEKADAAAASQLLSAPTAAEPDQGYTPKALAEGRAAQ 359 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 360 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 419 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 420 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 471 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 472 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 531 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 532 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 591 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 592 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 651 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 652 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 711 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 712 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 771 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 772 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 831 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 832 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 891 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 892 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 951 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 952 ENAAMPAVSLAVPLRVDARAAHNWDE 977 >gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686] Length = 995 Score = 997 bits (2578), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/986 (48%), Positives = 677/986 (68%), Gaps = 21/986 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 17 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 76 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 77 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 136 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 137 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 196 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ +Q+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 197 KMIDVQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 256 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 257 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 316 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++EP ++ + + + ++ + + ++ + TP+ L R + Sbjct: 317 SVEPCHVETDWGADAH-GPDVDVPEKADAAAASQLLSAPTAAEPDQGYTPKALAEGRAAQ 375 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I + ++QW+ + G +F T ++D ++ + +++ K Sbjct: 376 AIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELVGFSLALAPGK 435 Query: 418 DDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 ++ L + + D G + +I L+ LK+ E+ LKI N+KY Sbjct: 436 --------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDASILKIAQNMKY 487 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S KS++ Sbjct: 488 DWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGSGKSAV 547 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++ME GI Sbjct: 548 TFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGI 607 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ P +KTKTG Sbjct: 608 AVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMGLPGASKTKTG 667 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+RVHT Y++AST Sbjct: 668 QWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMAST 727 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I L Sbjct: 728 STGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLK 787 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 788 QAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 847 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + +R NERAAI Sbjct: 848 GQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNERAAI 907 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ ++ M Sbjct: 908 NAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVRRVM 967 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V+ + ++NW E Sbjct: 968 ENAAMPAVSLAVPLRVDARAAHNWDE 993 >gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] Length = 985 Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/991 (48%), Positives = 675/991 (68%), Gaps = 25/991 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFRNE+YPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRNELYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY IA + G VTI+S+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARIAAEAGGDVTIVSSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +++R+LV L+ DVP+ + L+ L+LE NGP+LI FLKA+EFT L RVA D DA+ Sbjct: 241 DQTKIARELVTLKNDVPLDVDLDGLVLEPQNGPKLIGFLKAMEFTSLTRRVAEATDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTS-----QFSSLSDQTSKINSEQTPQKLFL 352 ++EP ++ + A D D K + + S + TP L Sbjct: 301 SVEPSHVETGWGADASTADLHGPDMDIPPKADGEVTVVAVTATVTVSTTEAGYTPTALAD 360 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 R + ++ +YT I + ++ W+ + G +F T ++D ++ + +++ Sbjct: 361 RRAEAARAQKVDTSAYTCIRDIATLKLWLAEAVETGLLAFDTETTSVDPMQAELVGFSLA 420 Query: 413 TLDQKDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIG 466 + +I L + + D G T+ +I L+ LK E+ LKI Sbjct: 421 LAPGR--------AAYIPLQHKSGAGDLLGGGTVEGQIPLGEALAALKTVLEDASVLKIA 472 Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKS 523 N+KYD L++ RYGI+ F+D ML+SYVLD+G SH + ++++WL +T K++ S Sbjct: 473 QNMKYDWLIMRRYGINTVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYKDVAGS 532 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 KSS+ D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++DV+++M Sbjct: 533 GKSSVTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARM 592 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E GI +D+ +L ++S ++++ + E+ IY+L+GE+F + SPKQLGDILF K+ P + Sbjct: 593 EERGIAVDRQVLSRLSGDLAQAAAAYEDEIYELAGERFTIGSPKQLGDILFGKMGLPGAS 652 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KTKTGQW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN T+RVHT Y Sbjct: 653 KTKTGQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPATRRVHTCY 712 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 ++AST TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A Sbjct: 713 AMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVAD 772 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 I L Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL I Sbjct: 773 IAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSI 832 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 PR EA YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + IR N Sbjct: 833 PREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQIRAFN 892 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ERAAINAPIQGSAADI RRAMI + +L KLA +MLLQ+HDEL+FEVPE E+ + Sbjct: 893 ERAAINAPIQGSAADIIRRAMIRMEDALAKEKLAARMLLQVHDELIFEVPENEVEKTVSV 952 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + H ME A +P ++L VPL V+ + ++NW E Sbjct: 953 VRHVMENAAMPAVSLAVPLHVDARAAHNWDE 983 >gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234] gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234] Length = 1040 Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/1003 (48%), Positives = 675/1003 (67%), Gaps = 30/1003 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+ +HLFLVDGS FI+RAF+A P L+RK DGLPVNA+AGFCNMLWKLL ++R S+ Sbjct: 37 MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT 96 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFRN +Y YKANR PE L+PQ L+R AT+AF +P IE +G+EA Sbjct: 97 PTHFAVIFDYSSKTFRNALYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA 156 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AE+ G VTI+S+DKDLMQLV+P +YD++K+++I I VI+KWG+PPE Sbjct: 157 DDLIATYARLAEEAGAGVTIVSSDKDLMQLVTPNVSMYDSMKDKQIAIPDVIEKWGVPPE 216 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L A IKQ+KRRE I+ A Sbjct: 217 KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLSRAGEIKQQKRREAIIANA 276 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E ARLSR+LV L+ D P+ +PLE L L+ +GP+LI+FLK +EFT L RVA D DA Sbjct: 277 ELARLSRELVTLKKDTPLDVPLEDLRLDSQDGPKLIAFLKTMEFTTLTRRVAAATDTDAE 336 Query: 298 NIEPVVL-----------DINTTENKGI----AIETEIDRDTTIKTSQFSSLSDQTSKIN 342 +EP + D++ E G A + + S L+ + Sbjct: 337 AVEPAPVPVEWGAAAHGPDLDVGEAAGPPPTPASSSAAPPRGNAAKAAVSFLTGKGDADA 396 Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402 + TPQ L R + ++ P ++ +Y I + + +W+ + G F T ++D Sbjct: 397 TGATPQGLAQARAEHFAKAPFDHSAYATIRDLATLDRWIAEAREAGLFGFDTETTSLDPM 456 Query: 403 HSKPIAIAISTLDQKDD-TSFKVETIFIDLSVHTSQDSTGKNTLT-------KEILSYLK 454 + ++++ D +D + ++ L +H + +E LS LK Sbjct: 457 RADLCGVSLAIADYSNDPMGGTIRAAYVPL-IHKNGVGDLLGGGLVENQVPMREALSRLK 515 Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514 E+ LK+ N+KYD LV+ R+GI+M+ F+D MLMSYV+D+G H + S++++WL Sbjct: 516 NLLEDPSVLKVAQNLKYDYLVMKRHGIAMQSFDDTMLMSYVVDAGNGMHGMDSLSERWLG 575 Query: 515 YT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 +T K+I + K+S+ D + + +A E+++V L+LW +L+P+L + L VYER Sbjct: 576 HTPIPYKDIAGTGKASVSFDFVDIDKATTYAAEDADVTLRLWHVLKPRLAAKGLTRVYER 635 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 L++P+I V++ ME GI +D+ +L ++S E+++ +LE+ IY L+GE F + SPKQLGD Sbjct: 636 LERPLIAVLAHMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGD 695 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF K+ P G+KTKTGQW T+A LE + + + + I++WRQL+K+KSTY D+LP + Sbjct: 696 ILFGKMGLPGGSKTKTGQWSTSASVLEDLAAVGHELPRKIVDWRQLTKLKSTYTDALPGY 755 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 ++ T+RVHT Y+LA+T TGRL+S EPNLQNIP++T G++IR AFI+ P KL+SADYS Sbjct: 756 VHPETKRVHTGYALAATTTGRLSSSEPNLQNIPVRTAEGRRIRTAFIATPGHKLVSADYS 815 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELR+LAH+A I L Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYG Sbjct: 816 QIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYG 875 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 IS F LA QL I RSEA DYIKRYF RFPGI +Y+E TK F R++GYVETIFGRR HY + Sbjct: 876 ISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFAREHGYVETIFGRRAHYPD 935 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 I S S+R NERA+INAPIQGSAADI RRAM+ + +L++ KLA +MLLQ+HDEL+FE Sbjct: 936 IRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALDEAKLAARMLLQVHDELIFE 995 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 V E EI +IV ME A +P +++RVPLKV+ + + NW E Sbjct: 996 VEEGEIERTLPVIVSVMENAAMPALDMRVPLKVDARAAQNWDE 1038 >gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C] gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C] Length = 1004 Score = 990 bits (2560), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/1005 (48%), Positives = 677/1005 (67%), Gaps = 30/1005 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+ +HLFLVDGS FI+RAF+A P L+RK DGLPVNA+AGFCNMLWKLL ++R S+ Sbjct: 1 MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AVIFDY + TFRN +Y YKANR PE L+PQ L+R AT+AF +P IE +G+EA Sbjct: 61 PTHLAVIFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AE+ G VTI+S+DKDLMQLV+P +YD++K+++I + VI+KWG+PPE Sbjct: 121 DDLIATYARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L A IKQ+KRRE+I+ A Sbjct: 181 KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRESIIANA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + ARLSR+LV L+ D P+ +P E L+ +GP+LI+FLKA+EFT L RVA D DA Sbjct: 241 DLARLSRELVTLKKDTPLDVPPEDFRLDSQDGPKLIAFLKAMEFTTLTRRVAAATDTDAE 300 Query: 298 NIEPVVL-----------DINTTENKGIAIETEIDRDTTIKT----SQFSSLSDQTSKIN 342 IEP + D++ E G + T + + S LS Sbjct: 301 AIEPAHVPVEWGAQAHGPDLDVGEAGGPPPSPQSSSATPPRGNAARAAVSFLSSGQDADT 360 Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402 + TP L R + P ++ Y I + +++W+ G F + DA Sbjct: 361 TGATPTGLAEARAAYFGKAPFDHSGYRTIRDIDTLERWIADAREAGLVGFDTQATSPDAM 420 Query: 403 HSKPIAIAISTLDQKDDTSF-KVETIFIDLSVHTS--QDSTGKNTL-----TKEILSYLK 454 + + +++ D +D S ++ ++ L+ H S D G + +E LS LK Sbjct: 421 RADLVGFSLAVADYANDPSGSRIRAAYVPLA-HKSGVSDLLGGGPVDSQVPVRETLSRLK 479 Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514 + E+ LK+G N+KY LV+ R+GI+MR F+D MLMSYVLD+G +H + S+A++WL Sbjct: 480 ELLEDPSVLKVGQNLKYGYLVMKRHGIAMRSFDDTMLMSYVLDAGNGAHGMDSLAERWLG 539 Query: 515 YT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 +T K++ + +SS+ D + + +A E++++ L+LW +L+P+L + L VYER Sbjct: 540 HTPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAKGLTRVYER 599 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 L++P+I V++ ME GI +D+ +L ++S E+++ +LE+ IY L+GE F + SPKQLGD Sbjct: 600 LERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGD 659 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF K+ P G+KTKTGQW T+AQ LE + + + + I++WRQL+K+KSTY D+LP Sbjct: 660 ILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGF 719 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 ++ T+RVHT +++A+T TGRL+S +PNLQNIPI+T G+KIR AF++ P KL+SADYS Sbjct: 720 VHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYS 779 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELR+LAH+A I L Q F + +DIH M A+E+FGV ++ + ++RR AK INF IIYG Sbjct: 780 QIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGIIYG 839 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 IS F LA QL I RSEA DYIKRYF RFPGI +Y+E TK F R+NGYVETIFGRR HY + Sbjct: 840 ISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIFGRRAHYPD 899 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 I S S+R NERA+INAPIQGSAADI RRAM+ + +LE KL+ +MLLQ+HDEL+FE Sbjct: 900 IRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFE 959 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 V + EI +I+ ME A +P +++RVPLKV+ + ++NW E + Sbjct: 960 VEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNWDEAH 1004 >gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021] gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021] Length = 1004 Score = 989 bits (2558), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/1003 (48%), Positives = 676/1003 (67%), Gaps = 30/1003 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+ +HLFLVDGS FI+RAF+A P L+RK DGLPVNA+AGFCNMLWKLL ++R S+ Sbjct: 1 MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AVIFDY + TFRN +Y YKANR PE L+PQ L+R AT+AF +P IE +G+EA Sbjct: 61 PTHLAVIFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AE+ G VTI+S+DKDLMQLV+P +YD++K+++I + VI+KWG+PPE Sbjct: 121 DDLIATYARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L A IKQ+KRRE+I+ A Sbjct: 181 KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRESIIANA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + ARLSR+LV L+ D P+ +P E L+ +GP+LI+FLKA+EFT L RVA D DA Sbjct: 241 DLARLSRELVTLKKDTPLDVPPEDFRLDSQDGPKLIAFLKAMEFTTLTRRVAAATDTDAE 300 Query: 298 NIEPVVL-----------DINTTENKGIAIETEIDRDTTIKT----SQFSSLSDQTSKIN 342 IEP + D++ E G + T + + S LS Sbjct: 301 AIEPAHVPVEWGAQAHGPDLDVGEAGGPPPSPQSSSATPPRGNAARAAVSFLSSGQDADT 360 Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402 + TP L R + P ++ Y I + +++W+ G F + DA Sbjct: 361 TGATPTGLAEARAAYFGKAPFDHSGYRTIRDIDTLERWIADAREAGLVGFDTQATSPDAM 420 Query: 403 HSKPIAIAISTLDQKDDTSF-KVETIFIDLSVHTS--QDSTGKNTL-----TKEILSYLK 454 + + +++ D +D S ++ ++ L+ H S D G + +E LS LK Sbjct: 421 RADLVGFSLAVADYANDPSGSRIRAAYVPLA-HKSGVSDLLGGGPVDSQVPGRETLSRLK 479 Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514 + E+ LK+G N+KY LV+ R+GI+MR F+D MLMSYVLD+G +H + S+A++WL Sbjct: 480 ELLEDPSVLKVGQNLKYGYLVMKRHGIAMRSFDDTMLMSYVLDAGNGAHGMDSLAERWLG 539 Query: 515 YT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 +T K++ + +SS+ D + + +A E++++ L+LW +L+P+L + L VYER Sbjct: 540 HTPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAKGLTRVYER 599 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 L++P+I V++ ME GI +D+ +L ++S E+++ +LE+ IY L+GE F + SPKQLGD Sbjct: 600 LERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGD 659 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF K+ P G+KTKTGQW T+AQ LE + + + + I++WRQL+K+KSTY D+LP Sbjct: 660 ILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGF 719 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 ++ T+RVHT +++A+T TGRL+S +PNLQNIPI+T G+KIR AF++ P KL+SADYS Sbjct: 720 VHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYS 779 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELR+LAH+A I L Q F + +DIH M A+E+FGV ++ + ++RR AK INF IIYG Sbjct: 780 QIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGIIYG 839 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 IS F LA QL I RSEA DYIKRYF RFPGI +Y+E TK F R+NGYVETIFGRR HY + Sbjct: 840 ISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIFGRRAHYPD 899 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 I S S+R NERA+INAPIQGSAADI RRAM+ + +LE KL+ +MLLQ+HDEL+FE Sbjct: 900 IRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFE 959 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 V + EI +I+ ME A +P +++RVPLKV+ + ++NW E Sbjct: 960 VEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNWDE 1002 >gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83] gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83] Length = 1004 Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust. Identities = 483/1005 (48%), Positives = 676/1005 (67%), Gaps = 30/1005 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+ +HLFLVDGS FI+RAF+A P L+RK DGLPVNA+AGFCNMLWKLL ++R S+ Sbjct: 1 MKNGDHLFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVAGFCNMLWKLLTDARDTSVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AVIFDY + TFRN +Y YKANR PE L+PQ L+R AT+AF +P IE +G+EA Sbjct: 61 PTHLAVIFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEGYEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AE+ G VTI+S+DKDLMQLV+P +YD++K+++I + VI+KWG+PPE Sbjct: 121 DDLIATYARLAEEAGADVTIVSSDKDLMQLVTPKVSMYDSMKDKQITVPDVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQA+TGDS DN+PGIPGIG KTAA LL+EYG+L+ +L A IKQ+KRRE+I+ A Sbjct: 181 KMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQKRRESIIANA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + ARLSR+LV L+ D P+ +P E L+ +GP+LI+FLKA+EFT L RVA D DA Sbjct: 241 DLARLSRELVTLKKDTPLDVPPEDFRLDSQDGPKLIAFLKAMEFTTLTRRVAAATDTDAE 300 Query: 298 NIEPVVL-----------DINTTENKGIAIETEIDRDTTIKT----SQFSSLSDQTSKIN 342 IEP + D++ E G + T + + S LS Sbjct: 301 AIEPAHVPVEWGAQAHGPDLDVGEAGGPPPSPQSSSATPPRGNAARAAVSFLSSGQDADT 360 Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402 + TP L R + P ++ I + +++W+ G F + DA Sbjct: 361 TGATPTGLAEARAAYFGKAPFDHSGCRTIRDIDTLERWIADAREAGLVGFDTQATSPDAM 420 Query: 403 HSKPIAIAISTLDQKDDTSF-KVETIFIDLSVHTS--QDSTGKNTL-----TKEILSYLK 454 + + +++ D +D S ++ ++ L+ H S D G + +E LS LK Sbjct: 421 RADLVGFSLAVADYANDPSGSRIRAAYVPLA-HKSGVSDLLGGGPVDSQVPVREALSRLK 479 Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514 + E+ LK+G N+KY LV+ R+GI+MR F+D MLMSYVLD+G +H + S+A++WL Sbjct: 480 ELLEDPSVLKVGQNLKYGYLVMKRHGIAMRSFDDTMLMSYVLDAGNGAHGMDSLAERWLG 539 Query: 515 YT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 +T K++ + +SS+ D + + +A E++++ L+LW +L+P+L + L VYER Sbjct: 540 HTPIAYKDVTGTGRSSLTFDFVDIDKATAYAAEDADIALRLWHVLKPRLAAKGLTRVYER 599 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 L++P+I V++ ME GI +D+ +L ++S E+++ +LE+ IY L+GE F + SPKQLGD Sbjct: 600 LERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGD 659 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF K+ P G+KTKTGQW T+AQ LE + + + + I++WRQL+K+KSTY D+LP Sbjct: 660 ILFGKMGLPGGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGF 719 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 ++ T+RVHT +++A+T TGRL+S +PNLQNIPI+T G+KIR AF++ P KL+SADYS Sbjct: 720 VHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHKLVSADYS 779 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELR+LAH+A I L Q F + +DIH M A+E+FGV ++ + ++RR AK INF IIYG Sbjct: 780 QIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKAINFGIIYG 839 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 IS F LA QL I RSEA DYIKRYF RFPGI +Y+E TK F R+NGYVETIFGRR HY + Sbjct: 840 ISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIFGRRAHYPD 899 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 I S S+R NERA+INAPIQGSAADI RRAM+ + +LE KL+ +MLLQ+HDEL+FE Sbjct: 900 IRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFE 959 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 V + EI +I+ ME A +P +++RVPLKV+ + ++NW E + Sbjct: 960 VEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNWDEAH 1004 >gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1] gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1] Length = 978 Score = 980 bits (2534), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/991 (47%), Positives = 677/991 (68%), Gaps = 32/991 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV+A+ GFCNM+WKLL+++R ++ Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLNRKSDGLPVSAVLGFCNMVWKLLRDARDTAVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR++IYP+YKANR + PE L+PQ L+R AT+AF +P IE++G+EA Sbjct: 61 PTHFAVIFDYSSKTFRSKIYPEYKANRTEPPEDLIPQFGLIREATRAFDLPCIEMEGYEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY + + G TIIS+DKDLMQLV PT +YD +K+++I + V++KWG+PPE Sbjct: 121 DDLIATYARLVCEAGGDTTIISSDKDLMQLVGPTVSMYDPMKDKEIRVPEVVEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQALTGD+IDN+PG+PGIG KTAA LL+EYG+L+ +L A IKQ+KRREN++E+A Sbjct: 181 KMIDLQALTGDTIDNVPGVPGIGPKTAAQLLEEYGDLDTLLSRAHEIKQQKRRENLIEFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E AR+SR+LV L+ DV + +PL+ L L +GP+LI+FLKA+EF+ L RVA DAA Sbjct: 241 EKARISRELVRLKNDVTVEMPLDALALNPPDGPKLIAFLKAMEFSTLTRRVAEATGADAA 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS----KINSEQTPQKLFLE 353 ++EP +++ KG D T+ + + + + +TP+KL + Sbjct: 301 DVEPAYIEVQ----KGAEAHGP---DLTVPATGIGEPGAEGEVAPERDDGAETPEKLARK 353 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 S ++ Y I + + + QWV + G + T ++D ++ IA++T Sbjct: 354 LADAASHEAFDHSRYVCIRDLETLNQWVAEARETGVVALDTETTSLDPMQAELCGIALAT 413 Query: 414 LDQKDDTSFKVETIFIDLS-VHTSQDSTGKNTL-----TKEILSYLKKFFENEHFLKIGH 467 + ++ LS + ++D G + +E L+ L+ ++ LKIG Sbjct: 414 APNR--------AAYLPLSHKNGAEDLLGGGMVDGQIRVEEALAVLRPLLQDPSVLKIGQ 465 Query: 468 NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSR 524 N+KYD ++L+R+GI + ++D ML+SYVL++G +H + ++A++WL +T KE+ S Sbjct: 466 NLKYDWVLLYRHGIEIAPYDDTMLISYVLEAGTQAHGMDALAERWLGHTPVSYKEVTGSG 525 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 +S + D + + +A E+++V L+LW +L+P+L + L+ VYERL++PM+ V+ +ME Sbjct: 526 RSKVTFDMVGLERATVYASEDADVTLRLWKVLKPQLAAKGLVSVYERLERPMVSVICRME 585 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 GI +D+ +L ++S + ++ ++EE IY L+G +F + SPKQLGDILF ++ P GAK Sbjct: 586 HRGIMVDRQILSRMSGDFAQTAAAMEEEIYRLAGGRFTIGSPKQLGDILFGRMGLPGGAK 645 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TK+GQW T+AQ LE++ + + + I++WRQ++K+KSTY D+LP +I+ T RVHT YS Sbjct: 646 TKSGQWSTSAQVLEELAAAGHELPRKIVDWRQVTKLKSTYTDALPGYIHPETGRVHTSYS 705 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 LAST TGRL+S EPNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+LAH+A I Sbjct: 706 LASTTTGRLSSSEPNLQNIPVRTPEGRKIRTAFIAAPGYKLISADYSQIELRVLAHVADI 765 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + F +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IP Sbjct: 766 PELKKAFAEGMDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIP 825 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R EA YIKRYF RFPGI +Y+E+TK F R+ GYVETIFGRR HY EI S S+R NE Sbjct: 826 RDEAGAYIKRYFERFPGIRDYMERTKAFCREKGYVETIFGRRAHYPEIRSSNPSVRAFNE 885 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQI 943 RA+INAPIQGSAADI RRAM+ + +L D L KMLLQ+HDELVFE PE+ I A + Sbjct: 886 RASINAPIQGSAADIIRRAMMRMEAALADSGLVDVKMLLQVHDELVFEAPEDAIERAIPV 945 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I ME A P +L VPLKV+ + ++NW+E Sbjct: 946 IRTVMEGAAWPARSLSVPLKVDARAADNWEE 976 >gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42] gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CFN 42] Length = 999 Score = 979 bits (2531), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/1000 (48%), Positives = 674/1000 (67%), Gaps = 29/1000 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGFIFRAFHALPPLTRKSDGLPVGAVSGFCNMLWKLLRDARNTDVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AVIFDY A TFR ++Y YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DDIIATY AE G VTI+S+DKDLMQLV+P +YD++K+++I I V++KWG+PPE Sbjct: 121 DDIIATYARQAEAAGADVTIVSSDKDLMQLVTPNVHMYDSMKDKQIGIPDVVEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L A+ IKQ KRRE IL Sbjct: 181 KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANV 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A+LSR LV LRTDVP+ + L+ L+LE NGP+LI FLK +EFT L RVA DCDA+ Sbjct: 241 EMAKLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTSLTRRVAEVCDCDAS 300 Query: 298 NIEPVVL-----------DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346 IEP V+ D++ E + +A D + ++ S + + + Sbjct: 301 VIEPAVVPIEWGAAAHGPDLDAAEPEPVAGGIP---DVSGESVPVPSRAKAKPGVEGAFS 357 Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406 P L R + + P ++ +Y I + + +W+ G +F T ++DA ++ Sbjct: 358 PADLAKARAEAFATLPFDHSTYETIRDLATLDRWIAAARDTGLIAFDTETTSLDAMQAEL 417 Query: 407 IAIAISTLDQ-KDDTSFKVETIFIDLS-----VHTSQDSTGKNTL-TKEILSYLKKFFEN 459 + A++ D D T K+ ++ L+ +N + ++ L LK E+ Sbjct: 418 VGFAMAIADNVADPTGTKIRAAYVPLAHKDGVGDLLGGGLAENQIPMRDALPRLKALLED 477 Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT--- 516 E LK+ N+KYD L++ RYG+ + F+D ML+SYVLD+G +H + +++K+L +T Sbjct: 478 ESVLKVAQNLKYDYLLMKRYGVETKSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIP 537 Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 K++ S K++I D + + +A E+++V L+LWL+L+P+L L VYERL++P+ Sbjct: 538 YKDVAGSGKANITFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPL 597 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 + V+++ME GI +D+ +L ++S E+++ LE+ IY L+GE+FN+ SPKQLGDILF K Sbjct: 598 LPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYTLAGERFNIGSPKQLGDILFGK 657 Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 + G+KTKTGQW T+A LE + + + I++WRQL+K+KSTY D+LP +++ T Sbjct: 658 MGLAGGSKTKTGQWSTSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPET 717 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 +RVHT YSLAST TGRL+S EPNLQNIP++T G+KIR AFIS P KLISADYSQIELR Sbjct: 718 RRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELR 777 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +LAH+A+I L + FE+ +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F Sbjct: 778 VLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFG 837 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 LA QL I RSEA DYIK+YF RFPGI +Y+E K R GYVETIFGRRI+Y EI S Sbjct: 838 LANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSN 897 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPE 934 S+R NERAAINAPIQGSAAD+ RRAMI + +L + LA +MLLQ+HDEL+FEV + Sbjct: 898 PSVRAFNERAAINAPIQGSAADVIRRAMIKMEPALAEAGLAERVRMLLQVHDELIFEVED 957 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E++ A IIV ME A +P + +RVPLKV+ + + NW E Sbjct: 958 EDVEKAMPIIVSVMENATMPALEMRVPLKVDARAATNWDE 997 >gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 999 Score = 976 bits (2524), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/1000 (48%), Positives = 674/1000 (67%), Gaps = 29/1000 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS FI+RAF+A P L+RK DGLP+ A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPIGAVSGFCNMLWKLLRDARNTDVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AVIFDY A TFR ++Y YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DDIIATY AE G VTI+S+DKDLMQLVSP +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDIIATYARQAEASGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQIGIPDVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L A+ IKQ KRRE IL Sbjct: 181 KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLDRATEIKQVKRRETILANI 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + ARLSR LV LRTDVP+ + L+ L+LE NGP+LI FLK +EFT L RVA DCDA+ Sbjct: 241 DMARLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEVCDCDAS 300 Query: 298 NIEPVVL-----------DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346 IEP ++ D++ E +A + + +++ + + + + Sbjct: 301 AIEPAIVNVEWGKAAHGPDLDAAEPAPVAGGIP---EVSGESAPVPPRAKAKASVEGAFS 357 Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406 P L R + + P ++ +Y I + + +W+ G +F T ++DA ++ Sbjct: 358 PADLAKARAEAFATLPFDHTAYVTIRDLATLDRWIADARATGLVAFDTETTSLDAMQAEL 417 Query: 407 IAIAISTLDQ-KDDTSFKVETIFIDLS-----VHTSQDSTGKNTLT-KEILSYLKKFFEN 459 + +++ D D T K+ +I L+ N ++ ++ L LK E+ Sbjct: 418 VGFSLAIADNTADPTGTKIRAAYIPLAHKNGVGDLLGGGLADNQISMRDALPRLKSLLED 477 Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT--- 516 LK+ N+KYD L++ RYGI R F+D ML+SYVLD+G +H + +++K+L +T Sbjct: 478 AAVLKVAQNLKYDYLLMQRYGIETRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIP 537 Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 K++ S K+++ D + + +A E+++V L+LWL+L+P+L L VYERL++P+ Sbjct: 538 YKDVAGSGKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPL 597 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 + V+++ME GI +D+ +L ++S E+++ LE+ IY L+GE+FN+ SPKQLGDILF K Sbjct: 598 LPVLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERFNIGSPKQLGDILFGK 657 Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 + G+KTKTGQW T+AQ LE + + + I++WRQL+K+KSTY D+LP +++ T Sbjct: 658 MGLAGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHAET 717 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 +RVHT YSLAST TGRL+S EPNLQNIP++T G+KIR AFIS P KLISADYSQIELR Sbjct: 718 KRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELR 777 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +LAH+A+I L + FE+ +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F Sbjct: 778 VLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFG 837 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 LA QL I RSEA DYIK+YF RFPGI +Y+E K R GYVETIFGRRI+Y EI S Sbjct: 838 LANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSN 897 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPE 934 S+R NERAAINAPIQGSAAD+ RRAMI + +L + L +MLLQ+HDEL+FEV + Sbjct: 898 PSVRAFNERAAINAPIQGSAADVIRRAMIRMEPALAEVGLGDRVRMLLQVHDELIFEVED 957 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E++ A IIV ME A +P + +RVPL+V+ + ++NW E Sbjct: 958 EDVEKAMPIIVSVMENATMPALEMRVPLRVDARAASNWDE 997 >gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] Length = 1016 Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/1001 (48%), Positives = 675/1001 (67%), Gaps = 31/1001 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS FI+RAF+A P L+RK DGLP+ A++GFCNMLWKLL+++R + Sbjct: 18 MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPIGAVSGFCNMLWKLLRDARNTDVGVT 77 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AVIFDY A TFR ++Y YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 78 PTHLAVIFDYSARTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA 137 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DDIIATY AE G VTI+S+DKDLMQLVSP +YD++K+++I I V++KWG+PPE Sbjct: 138 DDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQIGIPDVVEKWGVPPE 197 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L A+ IKQ KRRE IL Sbjct: 198 KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI 257 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + ARLSR LV LRTDVP+ + L+ L+LE NGP+LI FLK +EFT L RVA DCDA+ Sbjct: 258 DMARLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEACDCDAS 317 Query: 298 NIEPVVL-----------DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346 IEP ++ D++ E + +A D + ++ + + + + Sbjct: 318 AIEPAIVRIEWGEKARGPDLDAAEPEPVAGGIP---DVSGESVPVPPRAKAKTAVEGAFS 374 Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406 P L R + + P ++ +Y I + + +W+ G +F T ++DA ++ Sbjct: 375 PADLAKARAEAFATLPFDHSAYVTIRDLATLDRWIADARATGLVAFDTETTSLDAMQAEL 434 Query: 407 IAIAISTLDQ-KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-------ILSYLKKFFE 458 + +++ D D T K+ ++ L VH + E L+ LK E Sbjct: 435 VGFSLAIADNTADPTGTKIRAAYVPL-VHKNGVGDLLGGGLAENQIPMGDALARLKALLE 493 Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT-- 516 +E LK+ N+KYD L++ RYGI R F+D ML+SYVLD+G +H + +++K+L +T Sbjct: 494 DESILKVAQNLKYDYLLMKRYGIETRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPI 553 Query: 517 -RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K++ S K+++ D + + +A E+++V L+LWL+L+P+L L VYERL++P Sbjct: 554 PYKDVAGSGKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERP 613 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 ++ V+++ME GI +D+ +L ++S E++++ LE+ IY L+GE+FN+ SPKQLGDILF Sbjct: 614 LLPVLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERFNIGSPKQLGDILFG 673 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 K+ G+KTKTGQW T+AQ LE + + + I++WRQ++K+KSTY D+LP +++ Sbjct: 674 KMGLSGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPE 733 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T+RVHT YSLAST TGRL+S EPNLQNIP++T G+KIR AFIS P KLISADYSQIEL Sbjct: 734 TKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIEL 793 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 R+LAH+A+I L + FE+ +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F Sbjct: 794 RVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAF 853 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA QL I RSEA DYIK+YF RFPGI +Y+E K R GYVETIFGRRI+Y EI S Sbjct: 854 GLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSS 913 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVP 933 S+R NERAAINAPIQGSAAD+ RRAMI + +L + LA +MLLQ+HDEL+FEV Sbjct: 914 NPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPALVEVGLADRVRMLLQVHDELIFEVE 973 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +E++ A +IV ME A +P + +RVPL+V+ + + NW E Sbjct: 974 DEDVEKAMPVIVSVMENATMPALEMRVPLRVDARAATNWDE 1014 >gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1] gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1] Length = 968 Score = 975 bits (2520), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/992 (50%), Positives = 674/992 (67%), Gaps = 44/992 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES---I 57 M+ +HLFLVDGS +++RA+YA P L RK DGLPV A+AG+CNMLWKLL ++R + + Sbjct: 1 MKATDHLFLVDGSGYVFRAYYALPPLKRKKDGLPVGAVAGYCNMLWKLLCDARNTATGIV 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAV+FDY + TFR +IYP YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVVFDYSSDTFRKQIYPQYKANRVMPPEDLIPQFSLIRQATKAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +A K G TIIS+DKDLMQLV+ LYD +K+ I I VI+KWG+ PE Sbjct: 121 DDLIATYAQLATKVGAKTTIISSDKDLMQLVNTHVSLYDGMKDRHIGISEVIEKWGVAPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KMV LQALTGD DN+PGIPGIG K AA LL ++G+L+ +L + + +KQ KRRENI Y+ Sbjct: 181 KMVDLQALTGDPTDNVPGIPGIGPKIAAQLLNQFGSLDLLLQHVTEVKQTKRRENIQAYS 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A++SR+LV L+TDVPI L+ ILE +GPRLI+FLKA+EF L RVA CDAA Sbjct: 241 EQAKISRELVQLKTDVPIENDLDDFILEPQDGPRLIAFLKAMEFATLTRRVAEATACDAA 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL-Q 356 I+ VLDI+ K + +RD+ K ++ SL D SE +PQ+L +R Q Sbjct: 301 VID--VLDIDVEWEK-----SGYERDSNFKRAERESLHD-----FSENSPQRLAQKRQDQ 348 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 LSQ I D+YT I + K +++W+ + + G +F T ++D +K + +++ + Sbjct: 349 ALSQ-KITRDTYTTIFDEKTLKEWLSQAQEQGFFAFDTETTSLDPIQAKLVGFSLALQPE 407 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTL-----------TKEILSYLKKFFENEHFLKI 465 K ++ L + G+N L T++ L+ LK E++ LKI Sbjct: 408 K--------AAYVPL-----EHVEGENDLLKGGRIVSQIETQKALTLLKPILEDQAVLKI 454 Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILK 522 G NIKYD LV+ +YGI + F+D ML+SY L++G +H++ +++++WL + K++ Sbjct: 455 GQNIKYDWLVMKQYGIVIHCFDDTMLLSYALEAGTLTHNMNALSERWLGHKPIAYKDLTH 514 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + K ++ Q +A E++++ L+LW +L+P+L+ + + +YERLD+P+I+V+++ Sbjct: 515 NGKKITSFAEVDLKQATLYAAEDADITLRLWQVLKPQLVAQGMTRIYERLDRPLIEVLAR 574 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D+ +L ++S E+++ LEE IY LSGEKFNL+SPKQLGDILF K+ P G Sbjct: 575 MEERGILVDRQILLRLSGELAQAAFILEEEIYQLSGEKFNLASPKQLGDILFGKMGLPGG 634 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 AKTK GQW T+AQ LE++ + + + I++WRQL+K+KSTY D+LP++I +T RVHT Sbjct: 635 AKTKGGQWSTSAQTLEELAAEGHILPRKIIDWRQLAKLKSTYTDALPSYILPKTGRVHTN 694 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 YSLA T TGRL+S EPNLQNIP++T G+KIR AF++P L+SADYSQIELRILAHIA Sbjct: 695 YSLAITSTGRLSSSEPNLQNIPVRTAEGRKIRTAFVAPKRHVLLSADYSQIELRILAHIA 754 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 IT L + F DIH + A++IFGV IE + +RR AK INF IIYGIS F LA QL Sbjct: 755 NITALKEAFSRGQDIHAITASQIFGVAIEGMPSDIRRRAKAINFGIIYGISAFGLANQLG 814 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R EA YI+ YF RFPGI +YIE TK F RQNGYVETIFGRRIHY EI + +R+ Sbjct: 815 LSRQEAGRYIQLYFERFPGIKDYIETTKTFARQNGYVETIFGRRIHYPEIKAASPQVRSF 874 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 NERAAINAPIQGSAADI RRAMI + +LE KL+ KMLLQ+HDELVFEVPEEE Sbjct: 875 NERAAINAPIQGSAADIIRRAMIQMEDALEKEKLSAKMLLQVHDELVFEVPEEESKKTMA 934 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ ME A +P ++L VPL+V + V+ NW E Sbjct: 935 VVKKVMENATMPVLSLSVPLEVKVMVAQNWDE 966 >gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum] Length = 1016 Score = 974 bits (2519), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/998 (48%), Positives = 671/998 (67%), Gaps = 25/998 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS FI+RAF+A P L+RK DGLP+ A++GFCNMLWKLL+++R + Sbjct: 18 MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPIGAVSGFCNMLWKLLRDARNTDVGVT 77 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AVIFDY A TFR ++Y YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 78 PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA 137 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DDIIATY AE G VTI+S+DKDLMQLVSP +YD++K+++I I VI+KWG+PPE Sbjct: 138 DDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQIGIPDVIEKWGVPPE 197 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L A+ IKQ KRRE IL Sbjct: 198 KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI 257 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + ARLSR LV LRTDVP+ + L+ L+LE NGP+LI FLK +EFT L RVA DCDA+ Sbjct: 258 DMARLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEACDCDAS 317 Query: 298 NIEPVVLDINTTEN-KGIAIETEIDRDTTIKTSQFSSLS-------DQTSKINSEQTPQK 349 IEP ++ I E +G ++ + S S S + +P Sbjct: 318 AIEPAIVRIEWGETARGPDLDAAEPEPVAGGIPEVSGESVPMPPRAKAKSAVEGAFSPAD 377 Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409 L R + + P ++ +Y I + + +W+ G +F T ++DA ++ + Sbjct: 378 LAKARAEAFATLPFDHSAYVTIRDLVTLDRWIADARATGLVAFDTETTSLDAMQAELVGF 437 Query: 410 AISTLDQ-KDDTSFKVETIFIDLSVHTSQDSTGKNTLT-------KEILSYLKKFFENEH 461 +++ D D T K+ ++ L VH + ++ L LK E+E Sbjct: 438 SLAIADNTADPTGTKIRAAYVPL-VHKNGVGDLLGGGLADNQIPMRDALPRLKALLEDES 496 Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RK 518 LK+ N+KYD L+L RYGI R F+D ML+SYVLD+G +H + +++K+L +T K Sbjct: 497 VLKVAQNLKYDYLLLKRYGIETRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYK 556 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 ++ S K+++ D + + +A E+++V L+LWL+L+P+L L VYERL++P++ Sbjct: 557 DVAGSGKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLP 616 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V+++ME GI +D+ +L ++S E+++ LE+ IY L+GE+FN+ SPKQLGDILF K+ Sbjct: 617 VLARMEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERFNIGSPKQLGDILFGKMG 676 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 G+KTKTGQW T+AQ LE + + + I++WRQ++K+KSTY D+LP +++ T+R Sbjct: 677 LSGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKR 736 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT YSLAST TGRL+S EPNLQNIP++T G+KIR AFIS P KLISADYSQIELR+L Sbjct: 737 VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVL 796 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH+A+I L + FE+ +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA Sbjct: 797 AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLA 856 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL I RSEA DYIK+YF RFPGI +Y+E K R GYVETIFGRRI+Y EI S S Sbjct: 857 NQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPS 916 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEE 936 +R NERAAINAPIQGSAAD+ RRAMI + +L + LA +MLLQ+HDEL+FEV +++ Sbjct: 917 VRAFNERAAINAPIQGSAADVIRRAMIKIEPALVEVGLADRVRMLLQVHDELIFEVEDQD 976 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + A +IV ME A +P + +RVPL+V+ + + NW E Sbjct: 977 VEKAMPVIVSVMENATMPALEMRVPLRVDARAATNWDE 1014 >gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1016 Score = 972 bits (2513), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/998 (48%), Positives = 674/998 (67%), Gaps = 25/998 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS FI+RAF+A P L+RK DGLP+ A++GFCNMLWKLL+++R + Sbjct: 18 MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPIGAVSGFCNMLWKLLRDARNTDVGVT 77 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AVIFDY A TFR ++Y YKANR PE L+PQ L+R AT+AF +P IE QGFEA Sbjct: 78 PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETQGFEA 137 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DDIIATY AE G VTI+S+DKDLMQLVSP +YD++K+++I I VI+KWG+PPE Sbjct: 138 DDIIATYARQAEATGADVTIVSSDKDLMQLVSPNVHMYDSMKDKQIGIPDVIEKWGVPPE 197 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L A+ IKQ KRRE IL Sbjct: 198 KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI 257 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + ARLSR LV LR DVP+ + L+ L+LE NGP+LI FLK +EFT L RVA +CDA Sbjct: 258 DMARLSRDLVRLRIDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEACNCDAG 317 Query: 298 NIEPVVLDINTTEN-KGIAIETEIDR-------DTTIKTSQFSSLSDQTSKINSEQTPQK 349 IEP ++ + E +G ++ D + ++ + + + +P Sbjct: 318 AIEPAIVRVEWGETARGPDLDAAAPEPVAGGIPDVSGESVPVPPRAKAKTAVEGAFSPAD 377 Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409 L R + + P ++ +Y I + + +W+ G +F T ++DA ++ + Sbjct: 378 LAKARAEVFATLPFDHSAYVTIRDLATLDRWIADARVTGLVAFDTETTSLDAMQAELVGF 437 Query: 410 AISTLDQ-KDDTSFKVETIFIDLSVHTSQDST------GKNTL-TKEILSYLKKFFENEH 461 +++ D D T K+ ++ L VH + +N + ++ L LK E+E Sbjct: 438 SLAIADNTADPTGTKIRAAYVPL-VHKNGVGDLLGGGLAENQIPMRDALPRLKALLEDEA 496 Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RK 518 LK+ N+KYD L+L RYGI R F+D ML+SYVLD+G +H + +++K+L +T K Sbjct: 497 VLKVAQNLKYDYLLLKRYGIETRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYK 556 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 ++ S K+++ D + + +A E++ V L+LWL+L+P+L L VYERL++P++ Sbjct: 557 DVAGSGKANVTFDLVDIDRATHYAAEDAEVTLRLWLVLKPRLAAAGLTSVYERLERPLLP 616 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V+++ME GI +D+ +L ++S E++++ LE+ IY L+GE+FN+ SPKQLGDILF K+ Sbjct: 617 VLARMEARGITVDRQILSRLSGELAQSAARLEDEIYVLAGERFNIGSPKQLGDILFGKMG 676 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 G+KTKTGQW T+AQ LE + + + I++WRQ++K+KSTY D+LP +++ T+R Sbjct: 677 LSGGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKR 736 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT YSLAST TGRL+S EPNLQNIP++T G+KIR AFIS P KLISADYSQIELR+L Sbjct: 737 VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPRHKLISADYSQIELRVL 796 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH+A+I L + FE+ +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA Sbjct: 797 AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLA 856 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL I RSEA DYIK+YF RFPGI +Y+E K R GYVETIFGRRI+Y EI S S Sbjct: 857 NQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPS 916 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEE 936 +R NERAAINAPIQGSAAD+ RRAMI + +L + LA +MLLQ+HDEL+FEV +E+ Sbjct: 917 VRAFNERAAINAPIQGSAADVIRRAMIKIEPALVEVGLADRVRMLLQVHDELIFEVEDED 976 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + A +IV ME A +P + +RVPL+V+ + + NW E Sbjct: 977 VEKAMPVIVSVMENATMPALEMRVPLRVDARAATNWDE 1014 >gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] Length = 997 Score = 969 bits (2505), Expect = 0.0, Method: Compositional matrix adjust. Identities = 489/998 (48%), Positives = 675/998 (67%), Gaps = 27/998 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPVGAVSGFCNMLWKLLRDARNTDVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AVIFDY A TFR ++Y YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELVPQFGLIREATRAFNLPCIETEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DDIIATY AE G VTI+S+DKDLMQLV+P +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDIIATYARQAEAVGADVTIVSSDKDLMQLVTPNVHMYDSMKDKQIGIPDVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L A+ IKQ KRRE IL Sbjct: 181 KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E AR+SR+LV LRTDVP+ + L+ L+LE NGP+LI FLK +EFT L RVA DCDA+ Sbjct: 241 EMARISRELVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEVCDCDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDR-DTTIKTSQFSSLSDQT--------SKINSEQTPQ 348 IEP V+ I E A ++D + +S Q+ + + +P Sbjct: 301 AIEPAVVRI---EWGDAAHGPDLDAAEPAPVAGGIPEVSGQSVPVPPRAKAGVEGAFSPA 357 Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408 L R + + P ++ +Y I + + +W+ G +F T ++DA ++ + Sbjct: 358 DLAKARAEAFAALPFDHSAYVTIRDLATLDRWIADARDTGLVAFDTETTSLDAMQAELVG 417 Query: 409 IAISTLDQ-KDDTSFKVETIFIDLS-----VHTSQDSTGKNTL-TKEILSYLKKFFENEH 461 +++ D D T K+ ++ L+ +N + ++ L LK E+E Sbjct: 418 FSMAIADNVADPTGTKIRAAYLPLAHKNGVGDLLGGGLAENQVPMRDALPRLKALLEDES 477 Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RK 518 LK+ N+KYD L+L RYGI + F+D ML+SYVLD+G +H + +++K+L +T K Sbjct: 478 VLKVAQNLKYDYLLLKRYGIETKSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYK 537 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 ++ S ++++ D + + +A E+++V L+LWL+L+P+L+ L VYERL++P++ Sbjct: 538 DVAGSGRANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLVAAGLTSVYERLERPLLP 597 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V+++ME GI +D+ +L ++S E+++ LE+ IY L+GE+FN+ SPKQLGDILF K+ Sbjct: 598 VLARMEARGITVDRQILSRLSGELAQGAARLEDEIYTLAGERFNIGSPKQLGDILFGKMG 657 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 G+KTKTGQW T+A LE + + + I++WRQL+K+KSTY D+LP +++ T+R Sbjct: 658 LAGGSKTKTGQWSTSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKR 717 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT YSLAST TGRL+S EPNLQNIP++T G+KIR AFIS P KLISADYSQIELR+L Sbjct: 718 VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVL 777 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH+A+I L + FE+ +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA Sbjct: 778 AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLA 837 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL I RSEA DYIK+YF RFPGI +Y+E K R GYVETIFGRRI+Y EI S S Sbjct: 838 NQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPS 897 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEE 936 +R NERAAINAPIQGSAAD+ RRAMI + +L + LA +MLLQ+HDEL+FEV +E+ Sbjct: 898 VRAFNERAAINAPIQGSAADVIRRAMIKIEPALAEAGLAERVRMLLQVHDELIFEVEDED 957 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + A IIV ME A +P + +RVPLKV+ + + NW E Sbjct: 958 VDKAMPIIVSVMENATMPALEMRVPLKVDARAATNWDE 995 >gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] Length = 997 Score = 966 bits (2497), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/990 (47%), Positives = 670/990 (67%), Gaps = 27/990 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKL+Q++R + Sbjct: 17 MKKGDHLFLVDGSGYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLMQDARNTDVGIV 76 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFRN++YP+YKANR PE L+PQ L+R AT+AF +P IE++GFEA Sbjct: 77 PTHFAVIFDYSSKTFRNDLYPEYKANRSAPPEDLIPQFGLIRQATRAFNLPCIEMEGFEA 136 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +A + G TIIS+DKDLMQLV T +YD +K+ +I I VI+KWG+PPE Sbjct: 137 DDLIATYCRLACEAGGDTTIISSDKDLMQLVGDTVAMYDPMKDRQIGIPEVIEKWGVPPE 196 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KMV LQALTGDS+DN+PG+PGIG KTAA LL+++G+L+ +L A IKQ KRRE+I+ Sbjct: 197 KMVDLQALTGDSVDNVPGVPGIGPKTAAQLLEQFGDLDGLLARAGEIKQDKRRESIIANT 256 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + AR+SR+LV L+ DVP+ L+ +L +GP+LI FLK +EFT L RVA +A Sbjct: 257 DKARISRQLVTLKNDVPVAEGLDDFVLHAPDGPKLIGFLKTMEFTSLTRRVAEATSTEAG 316 Query: 298 NIEPVVLDI---NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 ++ V + + ++ + + + SQ + + QT K TP L R Sbjct: 317 DVPAVAVTVERADSAHGPDVGAGAPVMARNGAEPSQANGTT-QTPK--QGDTPSLLAALR 373 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 L++ + I+ +Y I + ++ WV + G A+F + D ++ I +A++T Sbjct: 374 LERAATRKIDISAYQCIRDIATLKAWVAEAREAGIAAFDVRATAADPMQAELIGMAMATA 433 Query: 415 DQKDDTSFKVETIFIDLSVHTSQ-DSTGKNTLT-----KEILSYLKKFFENEHFLKIGHN 468 + +I + + D G TL +E L+ LK E++ LKI N Sbjct: 434 PGR--------AAYIPFAHKSGNGDLLGGGTLENQIPLREALAVLKPLLEDKSVLKIAQN 485 Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTR---KEILKSR 524 +KYD +++ RYGI + F+D ML+SYVLD+G H + ++A KWL +T K+++ S Sbjct: 486 LKYDLVIMSRYGIDVAPFDDTMLISYVLDAGTPHGHGMDALADKWLGHTPLQLKDVIGSG 545 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 K+S+ D++ + HA E+++V L+LWL+L+P+L L+ VYERL++P++ V+++ME Sbjct: 546 KNSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAATGLVSVYERLERPLVSVLARME 605 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 GI +D+ +L ++S E+++ LEE IY L GE+ N+ SPKQLGDILF ++ P G+K Sbjct: 606 QRGISVDRQILSRLSGELAQGAARLEEEIYQLVGERINIGSPKQLGDILFGRMGLPGGSK 665 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TKTGQW T+AQ LE + + + + I++WRQL+K+KSTY D+LP I+ T+RVHT Y+ Sbjct: 666 TKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDALPGFIHPETKRVHTSYA 725 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 LA+T TGRL+S +PNLQNIP++T G+KIR AFI+ +L+SADYSQIELR+LAH+A+I Sbjct: 726 LAATTTGRLSSSDPNLQNIPVRTAEGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAEI 785 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L Q F + DIH + A+E+F V +E + ++RR AK INF IIYGIS F LA QL IP Sbjct: 786 PQLRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIP 845 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R EA++YIK+YF RFPGI +YIE+TK + R++G+VETIFGRRIHY +I S SIR NE Sbjct: 846 REEASNYIKKYFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSNPSIRAFNE 905 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 RA+INA +QG+AADI RRAM+ + ++LE KL+ +MLLQ+HDEL+FE + E+ I+ Sbjct: 906 RASINARLQGTAADIIRRAMVRMDEALEKAKLSARMLLQVHDELIFETVDAEVEATIPIV 965 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 H ME A +P +++ VPL V+ + +NNW E Sbjct: 966 RHVMENAAMPAVSMSVPLHVDARAANNWDE 995 >gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130] gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130] Length = 978 Score = 966 bits (2496), Expect = 0.0, Method: Compositional matrix adjust. Identities = 470/991 (47%), Positives = 661/991 (66%), Gaps = 32/991 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES---I 57 M+K +HL+LVDGS++I+RA++A P L+RK DGLP+ A++GFCNMLWKLL +R + + Sbjct: 1 MKKGDHLYLVDGSAYIFRAYHALPPLTRKSDGLPIGAVSGFCNMLWKLLDEARDTARGVV 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFRNE+YP+YKANR + PE L PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSTTFRNELYPEYKANRSEPPEDLRPQFALIRQATRAFDVPCIETEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DDIIATY +A + G TI+S+DKDLMQL++P +YDT+K+ +D E V K+G+ P Sbjct: 121 DDIIATYAKLATEAGADTTIVSSDKDLMQLINPQVVMYDTMKDIVVDEEGVFAKFGVDPS 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQAL GDS DNIPG+PGIG KTAA LL EYG LE +L A IKQ KRREN++E+A Sbjct: 181 KMIDLQALAGDSTDNIPGVPGIGPKTAAQLLDEYGTLEELLERAGEIKQNKRRENMIEHA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + AR+S++LV LR DVP+ + L+ L L+ NGPRLI+FLK + L RVA D DAA Sbjct: 241 DLARISKQLVTLRDDVPLDMQLDELALDTVNGPRLIAFLKGIGLNSLTRRVAVDTDTDAA 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N+E + + E +G ++D +I D P KL E K Sbjct: 301 NVEAEEVGVEGYEMRG----PDMDAPQSIDGDHTQPQDDNGD--GPPYRPSKLVEELTAK 354 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ I + +Y + + + +++W+ + +G + T ++DA + ++++T + Sbjct: 355 VAAEKIEHSAYETVRDAEALKRWIAEAHDLGHVAVDTETTSLDAMACDLVGVSLATGPGR 414 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL-----------TKEILSYLKKFFENEHFLKIG 466 +I L+ H S+ + KE L+ LK E LKI Sbjct: 415 --------ACYIPLA-HLKDGSSDDGDMFSEGLDPDQMDLKEALALLKPMLEAPSVLKIA 465 Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 N+KYD LVL RYGI + F+D ML+SYVLD+GR H + +++ L +T KE+ S Sbjct: 466 QNLKYDWLVLSRYGIEVGPFDDTMLLSYVLDAGRGKHGMDALSLAHLDHTPIPFKEVAGS 525 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 KS + DK+S + +A E+++V L+LW LL+ +L+ EK++ VYERL++P++ V+ +M Sbjct: 526 GKSMVTFDKVSIEKASAYAAEDADVTLRLWTLLKARLVAEKMVTVYERLERPLVPVLCRM 585 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E G++ID+ +L ++S E+++ +E +I++++GE N++SPKQLG++LF K++ P G Sbjct: 586 EARGVEIDRQILSRLSGELAQKAAGIEADIHEMAGEPINIASPKQLGELLFGKMELPGGK 645 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KTKTGQW T AQ LE + + + + I++WRQL+K+KSTY D+LP INK T RVHT Y Sbjct: 646 KTKTGQWATGAQALEDLAAEGHELPRRIVDWRQLTKLKSTYTDALPTFINKTTGRVHTSY 705 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 ++AST TGR +S EPNLQNIP++T+ G+KIR AFI+ KL+SADYSQIELR+LAH+A Sbjct: 706 AMASTTTGRFSSSEPNLQNIPVRTEAGRKIRTAFIAADGHKLVSADYSQIELRVLAHMAD 765 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 I+ L Q F + +DIH M A+E+F V +E + P +RR AK INF IIYGIS F LA L I Sbjct: 766 ISQLKQAFADGIDIHAMTASEMFNVPVEGMDPSIRRQAKAINFGIIYGISAFGLANNLGI 825 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 R EA+DYIK YF RFPGI +Y+++TK F R++GYVETIFGRR HY EI S +R N Sbjct: 826 DRGEASDYIKMYFERFPGIRDYMDETKKFAREHGYVETIFGRRAHYPEIKSSNPQMRAFN 885 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ERAAINAPIQGSAADI RRAM + +L KL+ +MLLQ+HDEL+FEVP++E+ + Sbjct: 886 ERAAINAPIQGSAADIIRRAMARMEGALAAEKLSAQMLLQVHDELIFEVPDDEVDATIET 945 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +V ME A +P ++L VPL+V+ + + NW E Sbjct: 946 VVKVMEDAPMPALSLSVPLQVDARAAENWDE 976 >gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498] Length = 968 Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/988 (49%), Positives = 678/988 (68%), Gaps = 36/988 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M++ +HLFLVDGS +I+RA++A P L RK DGLPV A+AGFCNMLWKLL ++R +I Sbjct: 1 MKENDHLFLVDGSGYIFRAYHALPPLKRKKDGLPVGAVAGFCNMLWKLLCDARNTAIGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H A+IFDY + TFR EIYP YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHIAIIFDYSSNTFRKEIYPQYKANRAAPPEDLIPQFALIRQATKAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +A + G TIIS+DKDLMQLV+ LYD++K++ I I VI+KWG+ PE Sbjct: 121 DDLIATYAQLATQVGAKTTIISSDKDLMQLVNKHVSLYDSMKDKHIGISEVIEKWGVMPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQALTGD DNIPGIPGIG K AA LL ++G+L+ +L + +KQ KRRENI Y+ Sbjct: 181 KMIDLQALTGDPTDNIPGIPGIGPKIAAQLLDQFGSLDLLLQRVTEVKQIKRRENIQTYS 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A++SR+LV L+TDVP+ L+H ILE +GPRLI+FLKA+EFT L RVA CDAA Sbjct: 241 EQAKISRELVKLKTDVPVDKNLDHFILEPQDGPRLIAFLKAMEFTALTRRVAKETACDAA 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS--EQTPQKLFLERL 355 I+ + LDI E TT KT SS + T + E +PQ L +R Sbjct: 301 VIDALELDIEWKE-------------TTYKTD-LSSKENNTVLFHDFFENSPQILAQKRK 346 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + I D+Y I++ + +++W+ + + G SF T ++D +K + +++ Sbjct: 347 DQALIQKIARDAYKTILDEEILKEWLLEAQEQGYFSFDTKTISLDPMQAKLVGFSLALQP 406 Query: 416 QKDDTSFKVETIFIDLS-VHTSQDSTGKNTL-----TKEILSYLKKFFENEHFLKIGHNI 469 K ++ L V ++ G + T++ L+ LK EN+ LKIG NI Sbjct: 407 GK--------AAYVPLEHVAEEENLLGGGRIVPQIETQKALALLKPILENQAVLKIGQNI 458 Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526 KYD LV+ +Y I M F+D ML+SY L++G S+H + ++++WL + + K++ S + Sbjct: 459 KYDWLVMKQYNIVMCSFDDTMLLSYALEAGISTHGMDVLSKRWLGHKPISYKDLTHSGRK 518 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 + ++ Q +A E++++ L+LW +L+P+L+ +K+ +YERLD+P+I+++++ME Sbjct: 519 IVSFAQVDLKQATLYAAEDADITLRLWQVLKPQLVAQKMTKIYERLDRPLIEILARMEER 578 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 GI +D+ +L ++S E+++ L+LEE IY L GEKFN++SPKQLGDILF K+ GAKTK Sbjct: 579 GILVDRQILSRLSGELAQAALNLEEEIYQLVGEKFNIASPKQLGDILFGKMGLLGGAKTK 638 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 +GQW T+AQ LE++ + + + I++WRQL+K+KSTY D+LP++I T RVHT YSLA Sbjct: 639 SGQWSTSAQTLEELAAEGHILPRKIIDWRQLTKLKSTYTDALPSYILPTTGRVHTNYSLA 698 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 +T+TGRL+S EPNLQNIP++T G+KIR+AF++ L+SADYSQIELRILAH+A IT Sbjct: 699 TTLTGRLSSSEPNLQNIPVRTAEGRKIRKAFVASKGYLLLSADYSQIELRILAHVADITA 758 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F DIH M A+++FGV +E ++ ++RR AK INF IIYGISPF LA+QL I R Sbjct: 759 LKEAFTKGQDIHTMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGISPFGLASQLGISRK 818 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA+DYI+ YF RFPGI +Y+E+TK F R +GYVETIFGRRIHY EI + KS IR NERA Sbjct: 819 EASDYIQLYFERFPGIEDYMERTKIFARHHGYVETIFGRRIHYPEIKTAKSQIRAFNERA 878 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAPIQGSAADI RRAMI + +LE +L+ KMLLQ+HDEL+FEVP+ E T + +I Sbjct: 879 AINAPIQGSAADIIRRAMIQMENALEKERLSAKMLLQVHDELIFEVPKSESTKTAILIKK 938 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A +P ++L VPL+V + + NW E Sbjct: 939 VMENATMPALSLSVPLEVKVIAAQNWDE 966 >gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CNPAF512] Length = 997 Score = 964 bits (2492), Expect = 0.0, Method: Compositional matrix adjust. Identities = 488/998 (48%), Positives = 672/998 (67%), Gaps = 27/998 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPVGAVSGFCNMLWKLLRDARNTDVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AVIFDY A TFR ++Y YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELVPQFGLIREATRAFNLPCIETEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DDIIATY AE G VTI+S+DKDLMQLV+P +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDIIATYARQAEAVGADVTIVSSDKDLMQLVTPNVHMYDSMKDKQIGIPDVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L A+ IKQ KRRE IL Sbjct: 181 KMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANI 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E ARLSR LV LRTDVP+ + L+ L+LE NGP+LI FLK +EFT L RVA DCDA+ Sbjct: 241 EMARLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTTLTRRVAEVCDCDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDR-DTTIKTSQFSSLSDQT--------SKINSEQTPQ 348 IEP V+ I E A ++D + +S Q+ + + +P Sbjct: 301 AIEPAVVRI---EWGDAAHGPDLDAAEPAPVAGGIPEVSGQSVPVPPRAKAGVEGAFSPA 357 Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408 L R + + ++ +Y I + + +W+ G +F T ++DA ++ + Sbjct: 358 DLAKARAEAFAALLFDHSAYVTIRDLATLDRWIADARDTGLVAFDTETTSLDAMQAELVG 417 Query: 409 IAISTLDQ-KDDTSFKVETIFIDLS-----VHTSQDSTGKNTL-TKEILSYLKKFFENEH 461 +++ D D + K+ ++ L+ +N + ++ L LK E+E Sbjct: 418 FSMAIADNVADPSGTKIRAAYVPLAHKNGVGDLLGGGLAENQVPMRDALPRLKALLEDES 477 Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RK 518 LK+ N+KYD L+L RYGI + F+D ML+SYVLD+G +H + +++K+L +T K Sbjct: 478 VLKVAQNLKYDYLLLKRYGIETKSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYK 537 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 ++ S ++++ D + + +A E+++V L+LWL+L+P+L L VYERL++P++ Sbjct: 538 DVAGSGRANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLP 597 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V+++ME GI +D+ +L ++S E+++ LE+ IY L+GE+FN+ SPKQLGDILF K+ Sbjct: 598 VLARMEARGITVDRQILSRLSGELAQGAARLEDEIYTLAGERFNIGSPKQLGDILFGKMG 657 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 G+KTKTGQW T+A LE + + + I++WRQL+K+KSTY D+LP +++ T+R Sbjct: 658 LAGGSKTKTGQWSTSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKR 717 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT YSLAST TGRL+S EPNLQNIP++T G+KIR AFIS P KLISADYSQIELR+L Sbjct: 718 VHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRVL 777 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH+A+I L + FE+ +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA Sbjct: 778 AHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLA 837 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL I RSEA DYIK+YF RFPGI +Y+E K R GYVETIFGRRI+Y EI S S Sbjct: 838 NQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPS 897 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEE 936 +R NERAAINAPIQGSAAD+ RRAMI + +L + LA +MLLQ+HDEL+FEV +E+ Sbjct: 898 VRAFNERAAINAPIQGSAADVIRRAMIKIEPALAEAGLAERVRMLLQVHDELIFEVEDED 957 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + A IIV ME A +P + +RVPLKV+ + + NW E Sbjct: 958 VDKAMPIIVSVMENATMPALEMRVPLKVDARAATNWDE 995 >gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 997 Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/992 (47%), Positives = 672/992 (67%), Gaps = 29/992 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKL+ ++R + Sbjct: 15 MKKGDHLFLVDGSGYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLMLDARNTDVGIV 74 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFRN++YP+YKANR PE L+PQ L+R AT+AF +P +EI+G+EA Sbjct: 75 PTHFAVIFDYSSKTFRNDLYPEYKANRSAPPEDLIPQFGLIRQATRAFNLPCVEIEGYEA 134 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +A + G TIIS+DKDLMQLV T +YD +K+ +I I VI+KWG+PPE Sbjct: 135 DDLIATYARLACEAGGDTTIISSDKDLMQLVGDTVAMYDPMKDRQIGIPEVIEKWGVPPE 194 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KMV LQALTGDS+DN+PG+PGIG KTAA LL+++G+L+ +L A IKQ KRRE+I+ A Sbjct: 195 KMVDLQALTGDSVDNVPGVPGIGPKTAAQLLEQFGDLDTLLARAGEIKQDKRRESIIANA 254 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + AR+SR+LV L DVP+T LE +L +GP+LI FLK +EFT L RVA +A Sbjct: 255 DKARISRQLVTLMNDVPVTEGLEDFVLHAPDGPKLIGFLKTMEFTSLTRRVAEATSTEAG 314 Query: 298 NIEPVVLDINTTENK-----GIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 +++ V + + ++ G + + R+ + + +TSK TP L Sbjct: 315 DVQAVAVTVERADHAHGPDVGAGLPP-VARNAPGTEPDEAGGTAETSK--QGDTPSLLAA 371 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 RL++ + I+ +Y I + ++ WV + G A+F + + D ++ I +AI+ Sbjct: 372 LRLERAATGKIDISAYHCIRDISTLKAWVAEAREAGIAAFDVRATSADPMQAELIGMAIA 431 Query: 413 TLDQKDDTSFKVETIFIDLS-VHTSQDSTGKNTLT-----KEILSYLKKFFENEHFLKIG 466 T + +I + + + D G L +E L+ LK E+ LKI Sbjct: 432 TAPGR--------AAYIPFAHMSGNGDLLGGGALENQIPLREALAVLKPLLEDRSVLKIA 483 Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS-SHDIASIAQKWLSYTR---KEILK 522 N+KYD +++ RYG+ + F+D ML+SYVLD+G H + ++A+KWL +T K++ Sbjct: 484 QNLKYDLVIMSRYGVDVAPFDDTMLISYVLDAGTPHGHGMDALAEKWLGHTPLQLKDVTG 543 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 S KSS+ D++ + HA E+++V L+LWL+L+P+L + L+ VYERL++P++ V+++ Sbjct: 544 SGKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKGLVSVYERLERPLVPVLAR 603 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D+ +L ++S E+++ LEE IY L GE+ N+ SPKQLGDILF ++ P G Sbjct: 604 MEQRGISVDRQILSRLSGELAQGAARLEEEIYQLIGERINIGSPKQLGDILFGRMGLPGG 663 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 +KTKTGQW T+AQ LE + + + + I++WRQL+K+KSTY D+LP I+ T+RVHT Sbjct: 664 SKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDALPGFIHPDTKRVHTS 723 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y+LA+T TGRL+S +PNLQNIP++T G+KIR AFI+ + +L+SADYSQIELR+LAH+A Sbjct: 724 YALAATTTGRLSSSDPNLQNIPVRTAEGRKIRTAFITDKSHRLVSADYSQIELRVLAHVA 783 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 +I L Q F + DIH + A+E+F V +E + ++RR AK INF IIYGIS F LA QL Sbjct: 784 EIPQLRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLS 843 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IPR EA +YIK+YF RFPGI +YIE+TK + R++G+VETIFGRRIHY +I S S+R Sbjct: 844 IPREEAGNYIKKYFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSNPSLRAF 903 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 NERA+INA +QG+AADI RRAMI + ++LE L+ +MLLQ+HDEL+FE E E+ Sbjct: 904 NERASINARLQGTAADIIRRAMIRMEEALERAGLSARMLLQVHDELIFETVEAEVEATIP 963 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ H ME A +P +++ VPL V+ + +NNW E Sbjct: 964 VVRHVMENAAMPAVSMSVPLHVDARAANNWDE 995 >gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C] Length = 968 Score = 961 bits (2485), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/988 (49%), Positives = 675/988 (68%), Gaps = 36/988 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M++ +HLFLVDGS +I+RA++A P L RK DGLPV A+AGFCNMLWKLL + R +I Sbjct: 1 MKENDHLFLVDGSGYIFRAYHALPPLKRKKDGLPVGAVAGFCNMLWKLLCDVRNTAIGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H A+IFDY + TFR EIYP YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHIAIIFDYSSNTFRKEIYPQYKANRAAPPEELIPQFALIRQATKAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +A + G TIIS+DKDLMQLV+ LYD++K++ I I VI+KWG+ PE Sbjct: 121 DDLIATYAQLATQVGAKTTIISSDKDLMQLVNKHVSLYDSMKDKHIGISEVIEKWGVIPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQALTGD DNIPGIPGIG K AA LL ++G+L+ +L S +KQ KRRENI Y+ Sbjct: 181 KMIDLQALTGDPTDNIPGIPGIGPKIAAQLLDQFGSLDLLLQRVSEVKQIKRRENIKTYS 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A++SR+LV L+TDVPI L+H ILE +G RLI+FLKA+EFT L R+A CDAA Sbjct: 241 EQAKISRELVKLKTDVPIDKDLDHFILEPQDGRRLIAFLKAMEFTALTRRIAKETSCDAA 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN--SEQTPQKLFLERL 355 I+ + LDI E TT KT SS + T + SE +PQ L +R Sbjct: 301 AIDALELDIEWKE-------------TTCKTD-LSSKENNTVLFHDFSENSPQILAQKRK 346 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 K I D+Y I++ + +++W+ + + G SF T +++ +K + +++ Sbjct: 347 DKALIQKITRDTYKTILDEEILKEWLLEAQEQGYFSFDTETTSLNPMQAKLVGFSLALQP 406 Query: 416 QKDDTSFKVETIFIDLSVHTSQDST-GKNTL-----TKEILSYLKKFFENEHFLKIGHNI 469 K ++ L +D+ G + T++ L+ LK EN+ LKIG NI Sbjct: 407 GK--------AAYVPLEHVAEEDNLLGGGRIVPQIETQKALALLKPILENQAVLKIGQNI 458 Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526 KYD LV+ ++ I M F+D ML+SY L++G S+H + ++++WL + + K++ SR+ Sbjct: 459 KYDWLVMKQHNIVMCSFDDTMLLSYALEAGISTHGMDVLSERWLGHKPISYKDLTHSRRK 518 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 + ++ Q +A E++++ L+LW +L+P+L+ +K+ +YERLD+P+I+++++ME Sbjct: 519 IVSFARVDLKQATLYAAEDADITLRLWQVLKPQLVAQKMTKIYERLDRPLIEILARMEER 578 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 GI +D+ +L ++S E+++ +L+L E IY L GEKFN++SPKQLGDILF K+ P G KTK Sbjct: 579 GILVDRQILSRLSGELAQTVLNLGEEIYQLVGEKFNIASPKQLGDILFGKMGLPGGTKTK 638 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 +GQW T+AQ LE++ + + + I++WRQL+K+KSTY D+LP++I T RVHT YSLA Sbjct: 639 SGQWSTSAQTLEELAAEGHILPRKIIDWRQLTKLKSTYTDALPSYILPTTGRVHTNYSLA 698 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 +T+TGRL+S EPNLQNIP++T G+KIR AF++ L+SADYSQIELRILAH+A IT Sbjct: 699 TTLTGRLSSSEPNLQNIPVRTAEGRKIRAAFVASKGHLLLSADYSQIELRILAHVADITA 758 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F DIH M A+++FGV +E ++ ++RR AK INF IIYGISPF LA+QL I R Sbjct: 759 LKEAFAKGQDIHAMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGISPFGLASQLGISRK 818 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA+DYI+ YF RFPGI +Y+E+TK F R GYVETIFGRRIHY EI + K IR+ NERA Sbjct: 819 EASDYIQLYFERFPGIEDYMERTKIFARHYGYVETIFGRRIHYPEIKTDKPQIRSFNERA 878 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAPIQGSAADI RRAMI + +LE +L+ KMLLQ+HDEL+FEVP+ E + +I Sbjct: 879 AINAPIQGSAADIIRRAMIQMENALEKERLSAKMLLQVHDELIFEVPKSESKKTTILIKK 938 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A +P ++L VPL+V + + NW E Sbjct: 939 VMENATMPALSLSVPLEVKVIAAQNWDE 966 >gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099] gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099] Length = 1003 Score = 956 bits (2472), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/1001 (46%), Positives = 666/1001 (66%), Gaps = 43/1001 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFL+DGS +I+RA++A P L+RK DGLPV A++GFCNMLWKL+Q++R + Sbjct: 17 MKKGDHLFLIDGSGYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLMQDARNTDVGIV 76 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFRN++YP+YKANR PE L+PQ L+R AT+AF +P IE++GFEA Sbjct: 77 PTHFAVIFDYSSKTFRNDLYPEYKANRSAPPEDLIPQFGLIRQATKAFNLPCIEMEGFEA 136 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +A + G TIIS+DKDLMQLV T +YD +K+ +I I VI+KWG+PPE Sbjct: 137 DDLIATYCRLAREAGGDTTIISSDKDLMQLVGDTVGMYDPMKDRQIGIPEVIEKWGVPPE 196 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KMV LQALTGDS+DN+PG+PGIG KTAA LL+++G+L+ +L A IKQ KRRE+I+ Sbjct: 197 KMVDLQALTGDSVDNVPGVPGIGPKTAAQLLEQFGDLDGLLARAGEIKQDKRRESIIANT 256 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A +SR+LV L+ DVP+ L+ +L +GP+LI FLK +EFT L RVA +A Sbjct: 257 DKALISRQLVTLKNDVPVAEGLDDFVLHAPDGPKLIGFLKTMEFTSLTRRVAEATSTEAG 316 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE------------- 344 +++ V + + ++ D + +T + N E Sbjct: 317 DVQAVAVIVERADHAH-------GPDVGAGAPVVARSGAETGQANGEATATPTADTAKQG 369 Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404 TP L RL++ + I+ +Y I + ++ WV + G +F + + D + Sbjct: 370 DTPSLLSALRLERAATGKIDTAAYPCIRDIATLKAWVAEAREAGVTAFDVRATSADPMQA 429 Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ--DSTGKNTLT-----KEILSYLKKFF 457 + I +AI+T + +I + H S D G L +E L+ LK Sbjct: 430 ELIGMAIATAPGR--------AGYIPFA-HKSGNGDLLGGGALENQIPLREALAVLKPLL 480 Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS-SHDIASIAQKWLSYT 516 E+ LKI N+KYD +++ RYGI + F+D ML+SYVLD+G H + +A+KWL +T Sbjct: 481 EDRSVLKIAQNLKYDLVIMSRYGIDVAPFDDTMLISYVLDAGTPHGHGMDQLAEKWLGHT 540 Query: 517 R---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573 K++ S KSS+ D++ + HA E+++V L+LWL+L+P+L + L+ VYERL+ Sbjct: 541 PLQLKDVTGSGKSSVGFDQVDIDKATAHAAEDADVTLRLWLVLKPRLAAKGLVSVYERLE 600 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 +P++ V+++ME GI +D+ +L ++S E+++ LEE IY L GE+ N+ SPKQLGDIL Sbjct: 601 RPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLIGERINIGSPKQLGDIL 660 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 F ++ P G+KTKTGQW T+AQ LE + + + + I++WRQL+K+KSTY D+LP I+ Sbjct: 661 FGRMGLPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDALPGFIH 720 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753 T+RVHT Y+LA+T TGRL+S +PNLQNIP++T G+KIR AFI+ +L+SADYSQI Sbjct: 721 PDTRRVHTSYALAATTTGRLSSSDPNLQNIPVRTAEGRKIRTAFIADKGNRLVSADYSQI 780 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELR+LAH+A+I L Q F + DIH + A+E+F V +E + ++RR AK INF IIYGIS Sbjct: 781 ELRVLAHVAEIPQLRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGIS 840 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 F LA QL IPR EA++YIK+YF RFPGI +YIE+TK + R++G+VETIFGRRIHY +I Sbjct: 841 AFGLANQLSIPREEASNYIKKYFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIR 900 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S SIR NERA+INA +QG+AADI RRAM+ + ++L+ KL+ +MLLQ+HDEL+FE Sbjct: 901 SSNPSIRAFNERASINARLQGTAADIIRRAMVRMEEALDRAKLSARMLLQVHDELIFETV 960 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E E+ ++ H ME A +P +++ VPL V+ + +NNW E Sbjct: 961 EAEVEATIPVVRHVMENAAMPAVSMSVPLHVDARAANNWDE 1001 >gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse] gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse] Length = 968 Score = 956 bits (2472), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/981 (48%), Positives = 662/981 (67%), Gaps = 22/981 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+ +HLFLVDGSS+++RA+YA PLL RK DGLPV A+AGFCNMLWKLL ++R +I Sbjct: 1 MKATDHLFLVDGSSYVFRAYYALPLLKRKKDGLPVGAVAGFCNMLWKLLCDARNTAIGIV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAV+FDY + TFR +IYP YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVVFDYSSDTFRKQIYPQYKANRVAPPEDLIPQFSLIRQATKAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +A K G TIIS+DKD MQLV+ LYD +K++ I I V++KW + PE Sbjct: 121 DDLIATYAQLATKVGAKTTIISSDKDFMQLVNTHVSLYDGMKDKHIGISEVLEKWDVAPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KMV LQALTGD DN+PGIPGIG K AA LL ++G+L+ +L + +KQ KRRENI Y+ Sbjct: 181 KMVDLQALTGDPTDNVPGIPGIGPKIAAQLLNQFGSLDLLLQRVAEVKQTKRRENIQAYS 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A++SRKLV L+TDVPI L+ LILE +GPRLI+FLK +EF L RVA CDAA Sbjct: 241 EQAKISRKLVQLKTDVPIENDLDDLILESQDGPRLIAFLKTMEFATLTRRVAEATACDAA 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER-LQ 356 I+ + LD+ E ++E+ R + FS + TPQ L +R Q Sbjct: 301 VIDALDLDVEWVEPV-YGCDSEVKRAERALSHDFS-----------KNTPQVLAQKRKCQ 348 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 LSQ I D+Y I + + +++W+ + + G +F T ++D +K + +++ Q Sbjct: 349 ALSQ-TIKRDAYLSIFDEEILKKWLSEAKEQGFFAFDTETTSLDPLQAKLVGFSLAL--Q 405 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 ++ F T++ L+ LK E++ LKIG NIKYD LV+ Sbjct: 406 PGKAAYVPLEHFEGGGDLLGGGRIVGQIETRKALTLLKPILEDQAVLKIGQNIKYDWLVM 465 Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 +YGI +R F+D ML+SY LD+G +H++ +++++WL + K++ + K ++ Sbjct: 466 KQYGIVIRCFDDTMLLSYALDAGALTHNMDALSERWLGHKPIAYKDLTHNGKKITSFAQV 525 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 Q +A E++++ L+LW +L+P+L+ + VYERLD+P+++V+++ME GI +D+ Sbjct: 526 DLKQATLYAAEDADITLRLWQVLKPQLVARGMTKVYERLDRPLVEVLAKMEERGILVDRQ 585 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 +L ++S E+++ LEE IY L+GEKFNL+SPKQLG ILF K+ P G +TK+GQW T+ Sbjct: 586 ILLRLSGELAQAAFILEEEIYQLAGEKFNLASPKQLGGILFGKMSLPGGTRTKSGQWSTS 645 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 AQ LE++ + + + I++WRQL+K+KSTYAD+LP++I +T R+HT YSLA T TGRL Sbjct: 646 AQTLEELAAEGHILPRKIIDWRQLAKLKSTYADALPSYILSKTGRIHTNYSLAITSTGRL 705 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S EPNLQNIP++T G+KIR AFI+P L+SADYSQIELRILAHIA I L + F Sbjct: 706 SSSEPNLQNIPVRTTEGRKIRTAFIAPKGHMLLSADYSQIELRILAHIADIIALKEAFAQ 765 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIH + A+++FGV IE ++ +RR AK INF IIYGIS F LA QL + R EA+ YI+ Sbjct: 766 GQDIHAITASQMFGVAIEGMNSDIRRRAKAINFGIIYGISAFGLANQLGLSRQEASHYIQ 825 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF RFPGI +Y+E TKNF +NGYVETIFGRRIHY EI + +R+ NERAAINAPIQ Sbjct: 826 LYFERFPGIKDYMEMTKNFACRNGYVETIFGRRIHYPEIKAANLQVRSFNERAAINAPIQ 885 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 GSAADI RRAMI + +LE KL+ KMLLQ+HDEL+FEVPE+E ++ ME A + Sbjct: 886 GSAADIIRRAMIQMENALEKEKLSAKMLLQVHDELIFEVPEDESERTMALVKKVMENATM 945 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 P ++L VPL+V + + NW+E Sbjct: 946 PVLSLSVPLEVKVMAAQNWEE 966 >gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583] gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583] Length = 968 Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust. Identities = 481/986 (48%), Positives = 667/986 (67%), Gaps = 32/986 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+ +HLFLVDGSS+I+RA++A P L RK DGLPV A++GFCNMLW+LL ++R ++ Sbjct: 1 MKINDHLFLVDGSSYIFRAYHALPPLKRKKDGLPVGAVSGFCNMLWRLLCDARNTAVGLT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFD+ + TFR +IYP+YKANR P+ L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDHSSHTFRKQIYPEYKANRATPPDDLIPQFSLIRQATKAFNVPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY ++A + G TIIS+DKDLMQLV+ LYD +K++ I + V++KWG+ P+ Sbjct: 121 DDLIATYAHLATQVGAKTTIISSDKDLMQLVNAHVSLYDGMKDKHIGVAEVVEKWGVTPD 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KMV LQALTGD +DNIPGIPGIG KTAA LL ++G+L+ +L + S IKQ KRRENI Y Sbjct: 181 KMVDLQALTGDPVDNIPGIPGIGPKTAAQLLNQFGSLDLLLQHVSEIKQTKRRENIQTYG 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +SR LV L+TDVPI L+ ILE +GPRLI+FLKA+EFT L RVA +CDA Sbjct: 241 KQTEISRVLVKLKTDVPIDNDLDSFILEPQDGPRLIAFLKAMEFTTLTRRVAEATECDAT 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 IE ++ TE T D ++ + + S +SE PQ L +R ++ Sbjct: 301 IIEACDVETEWTE-------TVHGPDLDVQKADAA-----LSHTSSENCPQFLAQKRKEQ 348 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I D+Y +++ +++W+ + E G SF T ++D +K + +++ K Sbjct: 349 AFTQVITRDAYETLLDEDILKKWLLEAEEQGYFSFDTETTSLDPMQAKLVGFSLALQPNK 408 Query: 418 DDTSFKVETIFIDLS-VHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 +I L + D G + +I L+ LK EN+ LKIG N+KY Sbjct: 409 --------AAYIPLEHIEGGNDLFGGERIVGQIETQRALALLKPILENQAVLKIGQNMKY 460 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSI 528 D LV+ +Y I++R F+D ML+SYVLD+G S+H + ++++WL +T K + K + Sbjct: 461 DWLVMRQYDITIRSFDDTMLLSYVLDAGISTHGMDVLSERWLGHTPIAYKNLTCDGKKIV 520 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 ++ Q +A E++++ L+LW +L+P+L+ + + +YERLD+P+I+V+++ME GI Sbjct: 521 SFAQVDLKQATLYAAEDADITLRLWQVLKPQLVAQGMTKIYERLDRPLIEVLARMEERGI 580 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L +S E+++ LSLEE IY L+GE+FN++SPKQLGDILF+K+ P GAKTK G Sbjct: 581 LVDRQILSCLSGELAQAALSLEEEIYQLAGEQFNIASPKQLGDILFSKIGLPGGAKTKGG 640 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE++ + + + I++WRQ++K+KSTY D+LP++I+ +T RVHT YSLA+T Sbjct: 641 QWSTSAQILEELAAEGHMLPRKIVDWRQIAKLKSTYTDALPSYISPKTGRVHTNYSLATT 700 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S EPNLQNIPI+T G+KIR AFI+ L+SADYSQIELR+LAHIA IT L Sbjct: 701 STGRLSSSEPNLQNIPIRTIEGRKIRTAFIASEGCLLLSADYSQIELRLLAHIADITALK 760 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F DIH M A+++FGV IE++S +RR AK INF IIYGIS F LA QL I R EA Sbjct: 761 EAFAQGQDIHAMTASQMFGVAIERMSSDVRRRAKAINFGIIYGISAFGLANQLGISREEA 820 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 + YI+ YF RFPGI Y+E TK F RQ+GYVETIFGRRIHY EI + +R NERAAI Sbjct: 821 SHYIRVYFERFPGIQSYMEATKIFARQHGYVETIFGRRIHYPEIKARDRQVRAFNERAAI 880 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQGSAADI RRAMI + +LE L+ KMLLQ+HDEL+FE+P+ E I+ M Sbjct: 881 NAPIQGSAADIIRRAMIQMEGALEKEGLSAKMLLQVHDELIFEIPKAESEKTKAIVKKVM 940 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V + V+ NW E Sbjct: 941 ENATMPALSLSVPLEVKVMVAQNWDE 966 >gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73] gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73] Length = 968 Score = 952 bits (2462), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/986 (49%), Positives = 660/986 (66%), Gaps = 32/986 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+ +HLFLVDGS +I+RA++A P L RK DGLPV A+AGFCNMLWKLL ++R +I Sbjct: 1 MKANDHLFLVDGSGYIFRAYHALPPLKRKKDGLPVGAVAGFCNMLWKLLCDARNTAIGIV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H A+IFDY + TFR +IYP YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHVAIIFDYSSNTFRKQIYPQYKANRTAPPEDLVPQFALIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +A + G TIIS+DKDLMQLV+ LYD +K++ I I V++KWG+ PE Sbjct: 121 DDLIATYAQLATQVGAKTTIISSDKDLMQLVNTHVSLYDGMKDKHIGISEVMEKWGVMPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KMV QALTGD DNIPG+PGIG K AA LL ++G+LE +L + IKQ KRRENI Y+ Sbjct: 181 KMVDFQALTGDPTDNIPGVPGIGPKIAAQLLDQFGSLELLLQRVTEIKQIKRRENIQAYS 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A++SR+LV L+ DVPI L+H ILE +GPRLI+FLKA+EFT L RVA CDAA Sbjct: 241 EQAKISRELVKLKKDVPIDKSLDHFILEPQDGPRLIAFLKAMEFTALTRRVAKETSCDAA 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 I+ + +DI E T + D +K D SE +PQ L +R + Sbjct: 301 VIDALDIDIEWEE-------TTCEADLNVKEDNKVLFHD-----FSENSPQILAQKRKDQ 348 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I D+Y I++ + +++W+ + E G +F T ++D +K + +++ K Sbjct: 349 TLTQKIARDAYKTILDEEILKEWLLEAEKQGYFAFDTETTSLDPMQAKLVGFSLALQPGK 408 Query: 418 DDTSFKVETIFIDLSVHTSQDS--TGKNTL----TKEILSYLKKFFENEHFLKIGHNIKY 471 +I L +D G + T++ L+ LK EN+ LKIG NIKY Sbjct: 409 --------AAYIPLEHTAGEDGLLAGGRIVPQIETQKALALLKPILENQAILKIGQNIKY 460 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528 D LV+ +Y I MR F+D ML+SY L++G S+H I ++++WL + T K++ + K + Sbjct: 461 DWLVMKQYDIVMRSFDDTMLLSYALEAGISTHGIDVLSERWLGHKPITYKDLTYNGKKIV 520 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 +I Q +A E++++ L+LW +L+P+L+ +++ +YERLD+P+I+++++ME GI Sbjct: 521 SFAQIDLKQATLYAAEDADITLRLWQVLKPQLVAQRMTKIYERLDRPLIEILARMEERGI 580 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S E+++ L+LEE IY L GE+FN++SPKQLGDILF K+ P GAKTK G Sbjct: 581 LVDRQILSRLSGELAQAALNLEEEIYQLVGERFNIASPKQLGDILFGKMGLPGGAKTKNG 640 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE++ + + + I++WRQL+K+KSTY D+LP++I +T RVHT YSLA+T Sbjct: 641 QWSTSAQTLEELATEGHILPRKIVDWRQLAKLKSTYTDALPSYILTKTGRVHTNYSLATT 700 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S EPNLQNIP +T G+KIR AFI+ L+SADYSQIELRILAH A I L Sbjct: 701 STGRLSSSEPNLQNIPARTAEGRKIRAAFIASEGHILLSADYSQIELRILAHFADIGALK 760 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F DIH M A+++FGV +E + +R+ AK INF IIYGIS F LA QL I R EA Sbjct: 761 EAFLQGQDIHAMTASQMFGVAVEGMPSDIRQRAKAINFGIIYGISSFGLANQLGISRKEA 820 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +YI+ YF RFPGI +Y+EKTK F R +GYVETIFGRRIHY EI + IR NERAAI Sbjct: 821 GNYIRLYFERFPGIEDYMEKTKMFARHHGYVETIFGRRIHYPEIKTANPQIRAFNERAAI 880 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQGSAADI RRAMI V +LE KL+ KMLLQ+HDEL+FEV + E T + +I M Sbjct: 881 NAPIQGSAADIIRRAMIQVENALEKEKLSAKMLLQVHDELIFEVSKSESTKTAILIKKVM 940 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V + + NW E Sbjct: 941 ENATMPALSLSVPLEVKVIAAQNWNE 966 >gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43] gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43] Length = 980 Score = 949 bits (2453), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/990 (46%), Positives = 662/990 (66%), Gaps = 28/990 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKL+ +R S+ Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLVSEARDTSVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFD+ + TFRNE+YP+YKANR PE L+PQ ++R AT+AF +P IE++GFEA Sbjct: 61 PTHFAVIFDHSSKTFRNELYPEYKANRSAPPEDLVPQFAVIREATRAFDLPCIEMEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +A + G VT+IS+DKDLMQLV P +YD++K+ +I + VI+KWG+PPE Sbjct: 121 DDLIATYARLAREAGADVTVISSDKDLMQLVGPQVSMYDSMKDRQIGVPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQALTGDS+DN+PGIPGIG KTAA L++++G+L+ +L A IKQ KRRENI+E+A Sbjct: 181 KMIDLQALTGDSVDNVPGIPGIGPKTAAQLIEQFGDLDTLLERAGEIKQNKRRENIVEFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + AR+SR+LV LR DV ++ L L+L NGP+L++FLK +EFT L RVA D DA+ Sbjct: 241 DKARISRELVRLRDDVEVSEKLGELVLNPLNGPKLVAFLKGMEFTSLTRRVADATDTDAS 300 Query: 298 NIEPVVLDINTT-ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 ++ + ++ E +G ++ + + T+ ++ TPQ L R Sbjct: 301 AVDAADVAVDAAAEMRGPDLDPGDAANAAV-----------TATGQNDDTPQGLAKRRAA 349 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 + I+ +Y + + + ++ W G +F T ++DA ++ + +++ + Sbjct: 350 EAGSAKIDTTAYETLSDIEQLKAWCAMARETGVVAFDTETTSLDAMQAELVGFSLAVPEA 409 Query: 417 KDDTS-FKVETIFIDLSVHTSQDSTGKNTL--------TKEILSYLKKFFENEHFLKIGH 467 DT KV + L+ H++ + L LK E LKIG Sbjct: 410 APDTGELKVRACYAPLA-HSNGVGDLLGGGGLQPGQMPVRAALDELKALLEEPAVLKIGQ 468 Query: 468 NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524 N+KYD LV+ ++ I ++ F+D ML+SYVLD+G+ H + +++++WL + K++ S Sbjct: 469 NLKYDMLVMAQHNIEIKSFDDTMLLSYVLDAGQGGHGMDALSERWLGHKTIGYKDVTGSG 528 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 KS+IP +++ + +A E++ V L+LW L+ +L+ E + VYERL++P+ V+ +ME Sbjct: 529 KSAIPFAQVAIDKATAYAAEDAEVTLRLWHALKVRLVSEGMTSVYERLERPLAPVLMRME 588 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 GI++D+ +L ++S E+++ +LE I +L+GE FN+ SPKQLG+ILF K+ P G+K Sbjct: 589 QRGIRVDRQILSRLSGELAQGAAALEAEIQELAGENFNVGSPKQLGEILFDKMSLPGGSK 648 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TKTGQW T+AQ LE + + + + I++WRQL+K+KSTY D+LP IN T+RVHT ++ Sbjct: 649 TKTGQWSTSAQALEDLAAAGHELPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSFA 708 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 +A+T TGRL+S +PN+QNIP++T G+KIR AF++ P LISADYSQIELR+LAH+A I Sbjct: 709 MAATTTGRLSSSDPNIQNIPVRTAEGRKIRTAFVAEPGNVLISADYSQIELRVLAHVANI 768 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L Q F + +DIH M A+E+FGV IE + ++RR AK INF IIYGIS F LA QL I Sbjct: 769 PQLTQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIE 828 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 RSEA DYI++YF RFPGI +Y++ TK ++NGYV TIFGRR HY EI S +R NE Sbjct: 829 RSEAGDYIRKYFERFPGIKDYMDATKAEAKENGYVTTIFGRRAHYPEIRSSNPQVRAFNE 888 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 RAAINAPIQGSAADI RRAM+ + +LE + +MLLQ+HDEL+FE E + +I Sbjct: 889 RAAINAPIQGSAADIIRRAMVRMEPALEAAGMQARMLLQVHDELIFETAEADADKIIPVI 948 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 V ME A +P I++ VPL+V+ + + NW + Sbjct: 949 VEVMENAAMPAIDMAVPLQVDARAAKNWDQ 978 >gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1] Length = 968 Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/989 (49%), Positives = 669/989 (67%), Gaps = 38/989 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+ ++HLFLVDGS +I+RA++A P L RK DGLPV A+AGFCNMLWKLL ++R ++ Sbjct: 1 METKDHLFLVDGSGYIFRAYHALPPLKRKRDGLPVGAVAGFCNMLWKLLCDARNTAVGIV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR +IYP YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSDTFRKKIYPQYKANRAAPPEDLIPQFALIRQATKAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +A + G TIIS+DKDLMQLV+ LYD +K++ I + VI+KWG+ PE Sbjct: 121 DDLIATYAQLATQAGAKTTIISSDKDLMQLVNTRVSLYDGMKDKHIGVSEVIEKWGVAPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQAL GD+ DNIPG+PGIG K AA LL ++G L+ +L +A IKQ KRRENI Y Sbjct: 181 KMIDLQALVGDTTDNIPGVPGIGPKIAAQLLNQFGTLDLLLQHAEEIKQVKRRENIQAYK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E ++SR+LV L+TDVPI L++ ILE +GPRLI+FLKA+EFT L RVA CDA Sbjct: 241 EQTKISRELVKLKTDVPIDNNLDNFILEPQDGPRLIAFLKAMEFTTLTRRVAEATACDAE 300 Query: 298 NIEPVVLDINTTENKGI-AIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL- 355 I+ LDI+T + I + + ++ ++ T F + +PQ L +R Sbjct: 301 VID--ALDIDTEWTQTIHGPDLDSEKVGSLLTHDFC-----------KDSPQTLAQKRKD 347 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 Q L Q I DSY I++ K +++W+ + + G +F I T +++ +K I +++ Sbjct: 348 QALVQKNIG-DSYETILDEKILREWLLEAQEQGYFAFNIETTSLNPIQAKIIGFSLALQP 406 Query: 416 QKDDTSFKVETIFIDLSVHTSQ--DSTGKNTL-----TKEILSYLKKFFENEHFLKIGHN 468 +K +I L HT + D G + T+++L+ LK E++ LKIG+N Sbjct: 407 EK--------AAYIPLE-HTEEGCDLLGGGCVVTQIETQKVLALLKPILEDQAVLKIGYN 457 Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRK 525 +KY+ L++ +Y I + F+DIML+SY LD+G S+H+ ++++WL + K++ + K Sbjct: 458 MKYNWLIMKQYAIVTQPFDDIMLISYALDAGTSTHNRDILSERWLKHKPIAYKDLTHNGK 517 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 ++ Q +A E +++ L+LW +L+P+L+ + + +YERLD+P+I+V+++ME Sbjct: 518 KITSFAQVDLKQATFYAAEGADITLRLWQVLKPQLVAQGVTKIYERLDRPLIEVLAKMEE 577 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 GI +D+ +L ++S E+++ LSLEE IY L GE+FN++SPKQL DILF K+ P G KT Sbjct: 578 RGILVDRQILSRLSCELAQAALSLEEEIYQLVGERFNIASPKQLSDILFGKMGLPGGVKT 637 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 K GQW T+AQ LE++ + + + I++WRQL+K+KSTY D+LP +I T RVHT YSL Sbjct: 638 KNGQWSTSAQILEELAAEGHTLPRKIVDWRQLTKLKSTYTDALPYYILPETGRVHTNYSL 697 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A+T TGRL+S EPNLQNIPI+T G+KIR AFI+P L+SADYSQIELRILAHIA IT Sbjct: 698 ATTSTGRLSSSEPNLQNIPIRTPEGRKIRTAFIAPKGCVLLSADYSQIELRILAHIANIT 757 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L + F DIH + A++IFGV +E + +RR AK INF IIYGIS F LA QL I R Sbjct: 758 ALKEAFAQDQDIHAITASQIFGVAVEGMPSDIRRRAKAINFGIIYGISAFGLANQLSISR 817 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 +EA+ YI YF RFPGI +Y+E TK+F RQ+GYVETIFGRRIHY EI + S IR NER Sbjct: 818 NEASRYIDIYFERFPGIKDYMETTKSFARQHGYVETIFGRRIHYPEIKATNSQIRTFNER 877 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AAINAPIQGSAADI RRAMI + +L+ KL+ KMLLQ+HDEL+FEVPE E ++ Sbjct: 878 AAINAPIQGSAADIIRRAMIQMEGALKKEKLSAKMLLQVHDELIFEVPETESEKTKVLVT 937 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A +P ++L VPLKV + + NW E Sbjct: 938 KVMENAAMPALSLSVPLKVKVAAAQNWNE 966 >gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476] gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476] Length = 968 Score = 943 bits (2438), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/986 (49%), Positives = 663/986 (67%), Gaps = 32/986 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES---I 57 M+ +HL LVDGS +++RA+YA P L RK DGLPV A+AGFCNMLWKLL ++R + + Sbjct: 1 MKATDHLLLVDGSGYVFRAYYALPPLKRKKDGLPVGAVAGFCNMLWKLLCDARNTATGIV 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR +IYP YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSDTFRKQIYPQYKANRVDPPEDLIPQFALIRQATKAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +A K G TIIS+DKDLMQLV+ LYD +K++ I I VI+KWG+ PE Sbjct: 121 DDLIATYAQLATKVGAKTTIISSDKDLMQLVNKHVSLYDGMKDKHIGISEVIEKWGVTPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQAL GDS DN+PGIPGIG KTAA LL ++G+L+ +L + IKQ KRRENI Y+ Sbjct: 181 KMIDLQALIGDSTDNVPGIPGIGPKTAAQLLNQFGSLDLLLQRVTEIKQTKRRENIQAYS 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E ++SR+LV L+TDVPI L+ ILE +GPRLI+FLKA+EF+ L RVA CDAA Sbjct: 241 EQVKISRELVRLKTDVPIDSDLDDFILEPQDGPRLIAFLKAMEFSTLTRRVAEETTCDAA 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 I+ LD++ K DT IK + +SL + SE +PQ +R + Sbjct: 301 VID--ALDVDVEWEK-----LSHGHDTDIKNIEKTSLHN-----FSENSPQVFAQKRKDQ 348 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I D+YT I++ + +++W+ + + G +F T ++D +K + +++ K Sbjct: 349 ALTQKITRDTYTTILDEEILKEWLSQAQEQGFFAFDTETTSLDPMQAKLVGFSLALQPGK 408 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL------TKEILSYLKKFFENEHFLKIGHNIKY 471 +I L ++ K T++ L+ LK E+ LKIG NIKY Sbjct: 409 --------AAYIPLEHFEGKEDLLKGGRIASQIETRKALALLKPLLEDSAVLKIGQNIKY 460 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528 D LV+ +Y I +R F+D ML+SY LD+G +H++ ++++WL + K++ + K Sbjct: 461 DWLVVKQYDIVIRSFDDTMLLSYALDAGALTHNMDDLSERWLEHKPIAYKDLTHNGKKIT 520 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 ++ Q +A E++++ L+LW +L+P+L+ + +YERLD+P+++V+++ME GI Sbjct: 521 SFAQVDLKQATLYAAEDADITLRLWQVLKPQLVARGMTKIYERLDRPLVEVLARMEERGI 580 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S E+++ L LEE IY + EKFNL+SPKQLGDILF K+ P GAKTK G Sbjct: 581 LVDRQILLRLSGELAQAALILEEEIYKQADEKFNLASPKQLGDILFDKMGLPGGAKTKGG 640 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T+AQ LE+++ + + + I+EWRQL+K+KSTYAD+LP++I +T RVHT YSLA T Sbjct: 641 QWSTSAQTLEELSAEGHTLPRKIIEWRQLAKLKSTYADALPSYILPKTGRVHTNYSLAIT 700 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S EPNLQNIP++T G+KIR AFI+P L+SADYSQIELRILAHIA I L Sbjct: 701 STGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSADYSQIELRILAHIADIKALK 760 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F DIH + A+++FGV IE + +RR AK INF IIYGIS F LA QL I R EA Sbjct: 761 EAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINFGIIYGISAFGLANQLGISRQEA 820 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI+ YF RFPGI +Y+EKTK+F R+NGYVETIFGRRIHY EI + IR++NERAAI Sbjct: 821 GRYIQLYFERFPGIKDYMEKTKSFARENGYVETIFGRRIHYPEIKAKNVKIRSLNERAAI 880 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQGSAADI RRAMI + +L++ L+ KMLLQ+HDEL+FEVPEEE ++ M Sbjct: 881 NAPIQGSAADIIRRAMIQMEDALKEENLSAKMLLQVHDELIFEVPEEESKKTMAVVKDVM 940 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +P ++L VPL+V + + NW E Sbjct: 941 ENATMPVLSLSVPLEVKVMTAQNWDE 966 >gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup] gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup] Length = 969 Score = 942 bits (2434), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/987 (48%), Positives = 659/987 (66%), Gaps = 33/987 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES---I 57 M+ +HLFLVDGS +++RA+YA P L RK DGLPV A+AGFCNMLWKLL ++R + + Sbjct: 1 MKATDHLFLVDGSGYVFRAYYALPPLKRKKDGLPVGAVAGFCNMLWKLLCDARNTATGIV 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR +IYP+YKANR + PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSDTFRKQIYPEYKANRAEPPEDLIPQFALIRQATKAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +A K G TIIS+DKDLMQLV+ LYD +K++ I I V++KWG+ PE Sbjct: 121 DDLIATYAKLATKVGAKTTIISSDKDLMQLVNTHVSLYDGMKDKHIGISEVVEKWGVAPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQAL GDS DN+PGIPGIG KTAA LL ++ +L+ +L N + IKQ KRRENI Y Sbjct: 181 KMIDLQALIGDSTDNVPGIPGIGPKTAAQLLDQFDSLDLLLQNVTEIKQTKRRENIQAYR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E ++SR+LV L+TDVPI L+ ILE +GPRLI+FLKA+EF+ L RVA CDA Sbjct: 241 EQVKISRELVRLKTDVPIDNDLDDFILEPQDGPRLIAFLKAMEFSTLTRRVAEATTCDAT 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 I+ LDI+ K D+ IK ++ +SL + SE +PQ +R + Sbjct: 301 VID--ALDIDVEWEK-----LSHGHDSDIKNTERASLHN-----FSENSPQVFAQKRKDQ 348 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I D+YT I++ + ++ W+ + + G +F T ++D +K + +++ +K Sbjct: 349 ALTQKITRDAYTTILDEEILKDWLSQAQEQGFFAFNTETTSLDPMQAKLVGFSLALQPEK 408 Query: 418 DDTSFKVETIFIDLSVHTSQDS-------TGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 +I L + T++ L+ LK E+ LKIG NIK Sbjct: 409 --------AAYIPLEHFDEGEEDLLRGGHIASQIETRKALALLKPILEDSSVLKIGQNIK 460 Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527 YD LV+ +Y I + F+D ML+SY D+G +H++ ++++WL + + K++ + K Sbjct: 461 YDWLVMKQYDIIISSFDDTMLLSYAFDAGILTHNMDDLSERWLKHKPISYKDLTHNGKKI 520 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 ++ Q +A E +++ L+LW +L+P+L+ + +YERLD+P+++V+++ME G Sbjct: 521 TSFAQVDLKQATLYAAERADITLRLWQVLKPQLVARGMTKIYERLDRPLVEVLARMEERG 580 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I ID+ +L ++S E+++ L LEE IY + EKFNL+SPKQLGDILF K+ GAKTK Sbjct: 581 ILIDRQILLRLSGELAQAALILEEEIYKQADEKFNLASPKQLGDILFGKMGLSGGAKTKG 640 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQW T+AQ LE++ + + + I+EWRQL+K+KSTY D+LP++I +T RVHT YSLA Sbjct: 641 GQWSTSAQTLEELAAEGHVLPRKIIEWRQLAKLKSTYTDALPSYIFSKTGRVHTNYSLAI 700 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S EPNLQNIP++T G+KIR AFI+P L+SADYSQIELRILAHIA I L Sbjct: 701 TSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIAPKGHVLLSADYSQIELRILAHIADIKAL 760 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F DIH + A+++FGV IE + +RR AK INF IIYGIS F LA QL I R E Sbjct: 761 KEAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINFGIIYGISAFGLANQLGISRQE 820 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A YI+ YF RFPGI +Y+EKTK F R+NGYVETIFGRRIHY EI + IR++NERAA Sbjct: 821 AGRYIQLYFERFPGIKDYMEKTKIFARENGYVETIFGRRIHYPEIKAKNVKIRSLNERAA 880 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQGSAADI RRAMI + +L++ KL+ KMLLQ+HDEL+FEVPEEE ++ + Sbjct: 881 INAPIQGSAADIIRRAMIQMENALKEEKLSAKMLLQVHDELIFEVPEEESKKTMAVVKNV 940 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A +P ++L VPL+V + + NW E Sbjct: 941 MENATMPILSLSVPLEVKVMTAQNWDE 967 >gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] Length = 1001 Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/990 (46%), Positives = 649/990 (65%), Gaps = 28/990 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNS---RKESI 57 + ++HL LVDGS+FI+RA++A P L+RK DGLPV A++GFCNMLWKLLQ + Sbjct: 22 LTADDHLILVDGSTFIFRAYHALPPLTRKPDGLPVGAVSGFCNMLWKLLQEGLTPEEGDE 81 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFD+ A TFR+EIYP+YKA RP PE L+PQ L+R AT+AF IE +GFEA Sbjct: 82 PTHFAVIFDHSAQTFRSEIYPEYKAQRPPPPEDLVPQFGLIREATRAFSTHCIEQEGFEA 141 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY A ++G VTI+S DKDLMQL+ P + DT+K + V +K+G+ P+ Sbjct: 142 DDLIATYARQAAEQGARVTIVSGDKDLMQLIGPKIGMIDTMKNKTFGEPEVFEKFGVGPD 201 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 K++ +Q+L GDS+DN+PG+PGIG KTAALL+ E+ +LE +L A+ IKQKKRREN++E+A Sbjct: 202 KVIEVQSLAGDSVDNVPGVPGIGLKTAALLINEFSDLETLLAQAATIKQKKRRENLIEFA 261 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + AR+S++LV L+ DVP+ IP+ L + + +GP+ + FLKA+ FT L RVA T D A Sbjct: 262 DQARISKELVTLKQDVPVVIPVGDLSVCEIDGPKAVGFLKAMGFTTLTKRVAETTGADVA 321 Query: 298 NIEPVVLDI---NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 N+E L++ + ++KG +DR + + S + + PQ + ER Sbjct: 322 NVEATDLEVPGWDVPDHKG----RMMDRPGGMAAPDADNNSGDSPAPDGLMVPQTVADER 377 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 ++ P+++ +Y + + +Q W+ G +F T ++DA ++ + I++S Sbjct: 378 AARIGAIPVDSSAYETVTTLEQLQPWIDAAYEKGYVAFDTETTSLDAMQAELVGISLSCK 437 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK-------EILSYLKKFFENEHFLKIGH 467 K +I L+ + + L LK E+ LKI Sbjct: 438 PGK--------ACYIPLTHKDGEGDLLGGGGLLPDQIPLDDALKALKPMLEDRGILKIAQ 489 Query: 468 NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524 N+KYD LV+ R+G+ + ++D ML+SY +D+G+ + + ++++WL + KE+ S Sbjct: 490 NLKYDWLVMTRHGVDVDPYDDTMLLSYTVDAGKGGNGMDELSERWLGHKPIPFKEVCGSG 549 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 KS I DK++ + +A E+++V L+LWL L+P+L + + VYE L++PM+ V+++ME Sbjct: 550 KSMITFDKVAIDKATAYAAEDADVTLRLWLTLKPRLASDHMATVYETLERPMVPVLARME 609 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 GI +D+ +L ++S + ++ +LE IY+L+GE FN+ SPKQLGDILF K+ P G K Sbjct: 610 KRGISVDRQMLSRLSGDFAQGAAALESEIYELAGETFNVGSPKQLGDILFGKMGLPGGKK 669 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TKTG W T+AQ LE + +P+ I+EWRQLSK+KSTY D+LP +IN T+RVHT YS Sbjct: 670 TKTGAWSTSAQVLEDLAAEGHPLPSKIVEWRQLSKLKSTYTDALPGYINPETKRVHTSYS 729 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 LA+T TGRL+S EPNLQNIP++T+ G+KIR+AFI+ +KLISADYSQIELR+LAH+A I Sbjct: 730 LAATTTGRLSSSEPNLQNIPVRTEAGRKIRQAFIAEKGQKLISADYSQIELRVLAHMADI 789 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + FE+ LDIH M A+E+FG IE + P +RR AK INF IIYGIS F LA QL I Sbjct: 790 PQLKKAFEDGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINFGIIYGISAFGLANQLGIS 849 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R EA DYIK YF RFPGI +Y+E K V +GYV TIFGR+ HY E+N+ ++R E Sbjct: 850 RGEAGDYIKTYFQRFPGIKDYMEAVKKQVHADGYVTTIFGRKAHYPEVNTKNPNMRAFYE 909 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 RAAINAPIQGSAADI RRAM+ + L KL +MLLQ+HDEL+FEVPE+++ +I Sbjct: 910 RAAINAPIQGSAADILRRAMVRMEDRLTASKLDAQMLLQVHDELIFEVPEDQVEATIPLI 969 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME AC P + VPL+V+ + ++NW E Sbjct: 970 KDVMENACDPALKFSVPLQVDARAADNWDE 999 >gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614] gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614] Length = 996 Score = 933 bits (2412), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/983 (46%), Positives = 646/983 (65%), Gaps = 11/983 (1%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNS---RKESI 57 + ++HL LVDGS+FI+RA++A P L+RK DGLPV A++GFCNMLWKLLQ + Sbjct: 14 LTADDHLILVDGSTFIFRAYHALPPLTRKPDGLPVGAVSGFCNMLWKLLQEGLTPEEGDE 73 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFD+ A TFRNEIYP+YKA+RP PE L+PQ L+R AT+AF + IE +GFEA Sbjct: 74 PTHFAVIFDHSAQTFRNEIYPEYKAHRPDPPEDLVPQFGLIREATRAFSVHCIEQEGFEA 133 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY A ++G VTI+S DKDLMQL+ P + DT+K + V +K+G+ P+ Sbjct: 134 DDLIATYAREAAEQGARVTIVSGDKDLMQLIGPKVGMIDTMKNKTFGEAEVFEKFGVGPD 193 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 K++ +Q+L GDS+DN+PG+PGIG KTAALL+ E+G+LE +L A IKQ KRREN++E+A Sbjct: 194 KVIEVQSLAGDSVDNVPGVPGIGLKTAALLINEFGDLETLLAKADTIKQNKRRENLIEFA 253 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + AR+SR+LV L+ DVP+ +P+ L + +GP+ + FLKA+ FT L RVA D Sbjct: 254 DQARISRQLVTLKQDVPVEVPVGELSVTGIDGPKALGFLKAMGFTTLTRRVADVTGADMD 313 Query: 298 NIEPVVLDI---NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 ++ L + + ++KG +E D+ ++ S D + PQ + R Sbjct: 314 AVDAADLKVPGWDVPDHKGRIMERPGGGDSVAAEAE-KSPDDADPDTSGLLVPQTVADAR 372 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 Q + P+++ +Y + + + +++W G SF T ++DA ++ + +++ST Sbjct: 373 AQSIRAIPVDSSAYETVTSLERLKEWCDAAFEKGYVSFDTETTSLDAMQAELVGVSLSTE 432 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 K + + + + K+ L LK E+ LKI N+KYD L Sbjct: 433 PGKA-CYVPLGHVDGEGDLLGGGGLVEGQIPLKDALDVLKPMLEDRSVLKIAQNLKYDWL 491 Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 V+ RYGI + F+D ML+SY +D+G+ + + ++++WL + KEI S KS I D Sbjct: 492 VMTRYGIDITPFDDTMLLSYTVDAGKGGNGMDELSERWLDHKPIPFKEICGSGKSMITFD 551 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 K++ + +A E+++V L+LWL+L+P+L E++ VYE L++PM+ V+++ME GI +D Sbjct: 552 KVAIDKATAYAAEDADVTLRLWLILKPRLASERMATVYETLERPMVPVLARMEKRGISVD 611 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 + +L ++S E ++ + E IY+L+GE FN+ SPKQLGDILF K+ P G KTKTG W Sbjct: 612 RQMLSRLSGEFAQGMAGKESEIYELAGENFNIGSPKQLGDILFGKMGLPGGKKTKTGAWS 671 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+AQ LE + + + I+ WRQLSK+KSTY D+LP +IN T RVHT Y+LA+T TG Sbjct: 672 TSAQVLEDLAAEGHELPSRIVSWRQLSKLKSTYTDALPGYINPETGRVHTSYALAATTTG 731 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S EPNLQNIP++T+ G+KIR+AFI+ KLISADYSQIELR+LAH+A I L + F Sbjct: 732 RLSSSEPNLQNIPVRTEEGRKIRKAFIAEKGHKLISADYSQIELRVLAHMADIPQLKKAF 791 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ LDIH M A+E+FG IE + P +RR AK INF IIYGIS F LA QL I R EA DY Sbjct: 792 DDGLDIHAMTASEMFGTPIEGMDPMVRRRAKAINFGIIYGISAFGLANQLGISRGEAGDY 851 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 IK YF RFPGI +Y+E K V NGYV TIFGR+ HY E+N+ ++R ERAAINAP Sbjct: 852 IKTYFERFPGIKDYMEAIKKQVHANGYVTTIFGRKAHYPEVNTKNPNMRAFYERAAINAP 911 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGSAADI RRAM+ + LE KL +MLLQ+HDEL+FEVP+ ++ T +I ME A Sbjct: 912 IQGSAADILRRAMVRMENRLEGSKLDAQMLLQVHDELIFEVPDAQVETTIPVIKDVMENA 971 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 C P + L VPL+V+ + +NNW E Sbjct: 972 CDPALKLSVPLQVDARAANNWDE 994 >gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] Length = 980 Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/980 (46%), Positives = 641/980 (65%), Gaps = 21/980 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 + + +HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNMLWK++Q + Sbjct: 14 LTENDHLILIDGSTFIFRAYHALPPLTRKPDGLPVGAVSGFCNMLWKMMQEGPTKEEGDE 73 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFD TFRN+ YP+YKA+RP PE L PQ L+R AT+AFG+PAIE QG+EA Sbjct: 74 PTHFAVIFDKSGKTFRNDFYPEYKAHRPPPPEDLRPQFGLIRQATRAFGVPAIEQQGYEA 133 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY AE +G VTI+S DKDLMQLV+ + DT+K + I V +K+G+ PE Sbjct: 134 DDLIATYARQAEAQGARVTIVSGDKDLMQLVTDKIGMVDTMKNKIIGKPEVFEKFGVGPE 193 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 K+V +Q+L GDS+DN+PG+PGIG KTAALL+ E+G+L+ +L A IKQKKRREN++E+A Sbjct: 194 KVVEVQSLAGDSVDNVPGVPGIGLKTAALLINEFGDLDTLLEQAETIKQKKRRENLIEFA 253 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E AR+S++LV L VP+ P+E + D +G + + FLKA+ FT L +VA Sbjct: 254 EQARISKRLVQLEEAVPVETPVEDFSVCDVDGAQAVGFLKAMGFTSLTKKVADKTGAVLE 313 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 NIE + I E+ E D ++ + T L + Sbjct: 314 NIEAADVVIEGWESTAKPAEQAEDSAGELEGKAW--------------TAAPLAENVAAE 359 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +S PI+N +Y + + +++W+ + +G + TD ++A S + +++S K Sbjct: 360 ISALPIDNSAYETVSTVERLKEWIAEAYEVGYVAVDTETDALNAMESGLVGVSLSCTPGK 419 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + + + + E ++ LK E+ LKI N+KYD LVL Sbjct: 420 A-CYIPLAHVDGEGDLLGGGALLEGQIPLAEAITLLKPMLEDPAVLKIAQNMKYDWLVLK 478 Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 RYG+ M F+D ML+SY LD+G + + ++Q+WL++T KE+ S KS I DK+ Sbjct: 479 RYGVEMAPFDDTMLLSYALDAGMGGNGMDELSQRWLNHTPIPFKEVCGSGKSQISFDKVP 538 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + +A E+++V L+LW +L+P+L E++ VYERL++PM+ +++ME GI ID+ + Sbjct: 539 LDKATAYAAEDADVTLRLWKILKPRLAAEEMTVVYERLERPMVATLAKMERRGISIDRQM 598 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L +S E ++ LE I+D++GE FN+ SPKQLG+ILF K+ P G KTKTG W T+A Sbjct: 599 LSLLSGEFAQGAARLESEIHDVAGEIFNVGSPKQLGEILFGKMGLPGGKKTKTGAWSTSA 658 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+ + + + I+EWRQLSK+KSTY D+LP+ IN+ T RVHT +SLAST TGRL+ Sbjct: 659 SVLDDLAAQGHELPSKIVEWRQLSKLKSTYTDALPSFINQETGRVHTSFSLASTSTGRLS 718 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S EPN+QNIPI+T G+KIR+AFI+ KKLISADYSQIELR+LAH+A I L Q F + Sbjct: 719 SSEPNIQNIPIRTSEGRKIRQAFIAEKGKKLISADYSQIELRVLAHMADIPQLKQAFADG 778 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 LDIH M A+E+FGV IE + P +RR AK INF IIYGIS F LA QL I R EA DYIK Sbjct: 779 LDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGIIYGISAFGLANQLGIARGEAGDYIKT 838 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF RFPGI +Y+E+TK FV NGYVETIFGRR HY ++N+ ++R ERAAINAPIQG Sbjct: 839 YFERFPGIKDYMEETKKFVHANGYVETIFGRRAHYPDVNTKNPNMRQFYERAAINAPIQG 898 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 SAADI RRAM+ + + LE L +MLLQ+HDEL+FE+PE+++ ++++ +MEKA P Sbjct: 899 SAADIIRRAMVRMDEVLETANLDAQMLLQVHDELIFELPEDQVDETKKLVIATMEKATEP 958 Query: 955 KINLRVPLKVNIKVSNNWQE 974 + L VPLKV + ++NW+E Sbjct: 959 ALQLSVPLKVEAEAADNWEE 978 >gi|328545870|ref|YP_004305979.1| DNA polymerase I [polymorphum gilvum SL003B-26A1] gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1] Length = 994 Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/988 (46%), Positives = 646/988 (65%), Gaps = 19/988 (1%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNS---RKESI 57 + ++HL LVDGS+FI+RA++A P L+RK DGLPV A+AGFCNMLWKLL + Sbjct: 14 LTADDHLILVDGSTFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLWKLLTEGLTPEEGDE 73 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFD+ A TFRN+IYP YKA RP+ PE L+PQ L+R AT+AF + IE +GFEA Sbjct: 74 PTHFAVIFDHSAKTFRNDIYPAYKAQRPEPPEDLVPQFGLIREATRAFSVACIEQEGFEA 133 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY A G VTI+S DKDLMQL+ P + DT+K + V++K+G+ P+ Sbjct: 134 DDLIATYARQAADAGARVTIVSGDKDLMQLIGPRIGMIDTMKNKIFGEAEVVEKFGVGPD 193 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 K++ +QAL GDSIDN+PG+PGIG KTAA L+ E+G+LE +L A IKQ KRREN++E+A Sbjct: 194 KVIEVQALAGDSIDNVPGVPGIGIKTAAQLIGEFGDLEALLARADTIKQTKRRENLIEFA 253 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E AR+SRKLV L+ DVP+ P+ L + +GP+ + FLKALEFT L RVA D A Sbjct: 254 EQARISRKLVTLKQDVPVETPVGDLAVTSVDGPKAVGFLKALEFTTLTRRVAEATGADIA 313 Query: 298 NIEPVVLDI---NTTENKGIAIE---TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351 IEP+ LDI + + KG +E DR T SS D+ + TPQ L Sbjct: 314 AIEPLDLDIPGWHRPDGKGRQMERAEAAADRPTAA-----SSAPDELPA-AAGMTPQALA 367 Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411 R + PI+ Y + + ++ WV + G +F T ++DA ++ + +++ Sbjct: 368 AARAEAAKAEPIDRGVYETVTSLDRLKAWVAEAVETGLVAFDTETTSLDAMQAELVGVSL 427 Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471 +T K + + + + E L L+ E+ LKI N+KY Sbjct: 428 ATAPGKA-CYVPLAHVDGEGDLLGGGGLVEGQIPLAEALDVLRPMLEDAGVLKIAQNLKY 486 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 D LV+ RYG+ + ++D ML+SYVLD+G+ + + +A++WL +T KE+ S K+ + Sbjct: 487 DWLVMARYGVEIAPYDDTMLLSYVLDAGKGGNGMDELAERWLDHTPIPFKEVAGSGKAMV 546 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 DK+ + +A E+++V L+LW +L+P+L+ E++ VYE L++PM+ V+++ME GI Sbjct: 547 TFDKVPIDKATAYAAEDADVTLRLWRVLKPRLVAERMATVYETLERPMVPVLARMERRGI 606 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S + ++ + +LE I+ L+GE FN+ SPKQLGDILF K+ P G KTKTG Sbjct: 607 SVDRQMLSRLSGDFAQGMAALEAEIHALAGESFNIGSPKQLGDILFGKMGLPGGKKTKTG 666 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 W T+ L+ + + + I+ WRQLSK+KSTY+D+LP++I+ T+RVHT YSLAST Sbjct: 667 AWSTSVSVLDDLAAEGHELPSKIVAWRQLSKLKSTYSDALPSYIHPETKRVHTSYSLAST 726 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S EPNLQNIP++T+ G+KIR+AF++ +KLISADYSQIELR+LAH+A I L Sbjct: 727 TTGRLSSSEPNLQNIPVRTEEGRKIRKAFVADKGRKLISADYSQIELRVLAHMADIPQLK 786 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + LDIH M A+E+FGV IE + P +RR AK INF IIYGIS F LA QL + R EA Sbjct: 787 QAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGIIYGISAFGLAAQLGLSRGEA 846 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 DYIK YF RFPGI +Y+E K V GYV T+FGR+ HY ++N+ S+R ERAAI Sbjct: 847 GDYIKTYFERFPGIRDYMEAIKKEVHTKGYVTTVFGRKAHYPDVNTSNPSLRAFYERAAI 906 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQGSAADI RRAM+ + +L KL +MLLQ+HDEL+FEVPE+++ ++ M Sbjct: 907 NAPIQGSAADIIRRAMVRMDAALAAAKLDAEMLLQVHDELIFEVPEDQVEATIPVVRRVM 966 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976 E A P + L VPL+V+ + ++NW E + Sbjct: 967 ETATEPALTLSVPLQVDARAADNWDEAH 994 >gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] Length = 976 Score = 923 bits (2385), Expect = 0.0, Method: Compositional matrix adjust. Identities = 454/989 (45%), Positives = 646/989 (65%), Gaps = 30/989 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M K +HLFLVDGS++I+RA++A P L+RK DGLPV A++GFCNMLWKL++ SR S+ Sbjct: 1 MNKGDHLFLVDGSAYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLVEESRDTSVGVA 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFD+ + TFRNE+Y DYKANR PE L+PQ L+R A +AF +P IE QGFEA Sbjct: 61 PTHFAVIFDHSSTTFRNELYADYKANREAPPEDLVPQFALIREAVRAFDLPCIEKQGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATYT A + G VTI+S+DKDLMQLV P LYD +K++++ + V +K+G+ P+ Sbjct: 121 DDLIATYTRHAVEAGGDVTIVSSDKDLMQLVGPRVILYDQMKDKRLGPDEVKEKFGVHPD 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQAL GD+ DN+PG+PGIG KTAA LL EYG+LE +L A+ IKQ KRREN++ +A Sbjct: 181 KMIDLQALVGDTSDNVPGVPGIGPKTAAQLLDEYGDLETLLERAAEIKQNKRRENLIAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + ARLS+ LV L + P+ +PL+ L + + +G +LISFLKA+EFT L R A DA+ Sbjct: 241 DQARLSKTLVTLDQNTPLDVPLDDLFIHEPDGEKLISFLKAMEFTSLTRRAAAQLGTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +E + ++T D D D + TP L R Sbjct: 301 EVESAAIAVDTPARG-------PDLDPAGSAVAAPGAGDAALPL----TPAALVESRRAA 349 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + ++ +Y I + + W+ + G +F ++ A + ++ +T + Sbjct: 350 AAASVFDHSAYVTIRDAATLLAWMDEARETGLLAFDTEASSLSAMKCDLVGVSFAT---R 406 Query: 418 DDTSFKVETIFID-------LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 + V + LS +D G E L+ LK E++ LKIG N+K Sbjct: 407 AGRAAYVPLAHVSPSGEADLLSDKAVEDEIGPQLPIDEALAILKPVLEDDAVLKIGQNVK 466 Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRS--SHDIASIAQKWLSY---TRKEILKSRK 525 YD LV+ R+GI+M F+D ML+SY LD+ S H + +++++L + + KE+ S K Sbjct: 467 YDYLVMRRHGITMAPFDDTMLISYALDASASLAGHGMDELSERFLGHKPMSYKELCGSGK 526 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 + PI + +V +A E+++V L+LW +L+P+L+ E L VYERL++P++ V+++ME Sbjct: 527 GARPIAACAIDKVTAYAAEDADVTLRLWQVLKPRLVAEGLATVYERLERPLVAVLARMEE 586 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 GI++D+ +L ++S ++ LE I +++GE FN SPKQLG++LF KL P G KT Sbjct: 587 RGIKVDRQILSRLSGRFAQKQAGLEAEIAEIAGETFNPGSPKQLGEVLFGKLGLPGGKKT 646 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 K+GQW T + LE + +P+ + I++WRQL+K+K TY D+LP H++ + R+HT YS+ Sbjct: 647 KSGQWSTDVRVLEDLAAEGHPLPRRIVDWRQLTKLKGTYTDTLPGHMDAQG-RIHTSYSM 705 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 AST TGRL+S EPNLQNIP++T+ G+ IR AF++P L+SADYSQIELRILAHIA I Sbjct: 706 ASTTTGRLSSSEPNLQNIPVRTEEGRAIRTAFVAPAGHSLVSADYSQIELRILAHIADIP 765 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L + F LDIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR Sbjct: 766 QLKEAFREGLDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLSIPR 825 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA YIKRYF RFPGI +Y++ TK F +++G+VET+FGRR+HY +I SP +S+R NER Sbjct: 826 DEAGTYIKRYFERFPGIRDYMDSTKAFAKEHGHVETLFGRRVHYPDIRSPNASVRAFNER 885 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AAINAPIQG+AADI RRAMI + +L D L+ +MLLQ+HDEL+FEV +++I ++ Sbjct: 886 AAINAPIQGTAADIIRRAMIRMEPALADAGLSARMLLQVHDELIFEVEDDQIDATLPVVR 945 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME+A LP + L VP++V+ K + NW E Sbjct: 946 RVMEEAALPVVQLSVPIEVDAKAAANWDE 974 >gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506] gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506] Length = 981 Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust. Identities = 450/985 (45%), Positives = 650/985 (65%), Gaps = 23/985 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 ++ +H+ L+DGS++I+RA++A P L+R D LPV A+AGFCNMLWKL++ +H Sbjct: 7 LEAGDHVVLIDGSAYIFRAYHALPPLTRPSDKLPVGAVAGFCNMLWKLVRAQGFSPAPTH 66 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+FD TFR +IYP YKA RP +PE L+PQ PL+R AT+AF + +E +EADD+ Sbjct: 67 LAVVFDKSEQTFRKDIYPLYKAQRPDLPEDLIPQFPLIREATRAFDLACVEQDKYEADDL 126 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC-LYDTVKEEKIDIEHVIKKWGIPPEKM 179 +ATY +A+ +G VTIIS+DKDLMQLV + +YD +K+ I +E V +K+G+ PEK+ Sbjct: 127 MATYAELAKAKGALVTIISSDKDLMQLVEGSRVRMYDPMKDRAIGVEEVFEKFGVGPEKV 186 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 V +Q+L GDS+DN+PG+PGIG KTAA LL EYG+L+ +L A IKQ KRREN++E+A+ Sbjct: 187 VDVQSLAGDSVDNVPGVPGIGIKTAAQLLAEYGDLDTLLARAEEIKQTKRRENLIEFADQ 246 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 ARLSR+LV L+ DVP+ +PL+ + + + G +LI+FLKA+EF L RVA TY+ +AA I Sbjct: 247 ARLSRELVTLKRDVPLEVPLDDIAVVEPEGKKLIAFLKAMEFNTLTRRVAETYEIEAAAI 306 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 EP + ++ + +D DT S + + S TPQ L R+++ + Sbjct: 307 EPDS-GLKAGGHESDELRAGLDPDT--DRSAIPEGIEPPAPGESGLTPQALSAARIKEAT 363 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 P++ Y + + +++WV + +G + T +D + + +++T Sbjct: 364 ATPVDRSKYETVTTLERLKEWVARAFDLGFVAVDTETTGLDPMQADIVGFSLATAPN--- 420 Query: 420 TSFKVETIFIDLSVHTSQDST--GKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYD 472 E ++ LS H D + L +I ++ +K E+ LKIG N+KYD Sbjct: 421 -----EACYVPLS-HKGGDEGLFSEGLLPDQIPIPDAVAAIKPLMEHPGVLKIGQNLKYD 474 Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 L+L R GI + ++D ML+SYVLD+G S H + ++ +WL +T +E+ K I Sbjct: 475 WLILKRLGIELGPYDDTMLVSYVLDAGASPHGMDPLSMRWLGHTPIKFEEVCGKGKGQIC 534 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 D+ + + ++A E+++V L+LW +L+P+L E VYE L++P++ V++QME GI Sbjct: 535 FDRAAIDKATDYAAEDADVTLRLWRVLKPRLAAEGKTTVYETLERPLVTVLAQMEERGIT 594 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID+ +L ++S E ++ + LE I +++GE FN SPKQLGDILF K++ P G KT TG Sbjct: 595 IDRQMLSRLSGEFAQGMGRLEAEISEMAGETFNPGSPKQLGDILFGKMQIPGGRKTPTGA 654 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 W T A LE++ + + + IL+WRQL K+KSTY D+LP ++NK T RVHT ++LA+T Sbjct: 655 WSTGADVLEELAEQGHELPRRILDWRQLQKLKSTYTDALPTYVNKETGRVHTSFALAATT 714 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S EPNLQNIP++T+ G+KIR+AFI+ P KL+SADYSQIELR+LA IA L Q Sbjct: 715 TGRLSSSEPNLQNIPVRTEEGRKIRKAFIAAPGHKLVSADYSQIELRLLAEIADTPSLRQ 774 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F++ LDIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA QL IPR EA Sbjct: 775 AFQDGLDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIPREEAG 834 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 YIKRYF RFPGI Y+++T+NF R++GYVET+FGRR HY +I++ SIR NERAAIN Sbjct: 835 AYIKRYFERFPGIRAYMDETRNFAREHGYVETLFGRRCHYPDISAKNPSIRAFNERAAIN 894 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 A +QGSAADI RRAM + +LE L+ +MLLQ+HDEL+FEVP++EI ++ +ME Sbjct: 895 ARLQGSAADIIRRAMARMDAALEKAGLSARMLLQVHDELIFEVPDDEIAATIPVVRETME 954 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A P + L+VPLKV+ + + NW E Sbjct: 955 LAPFPAVALKVPLKVDARAAENWDE 979 >gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] Length = 971 Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/987 (46%), Positives = 656/987 (66%), Gaps = 31/987 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS- 59 M+K +HLFLVDGS++I+RA++A P L+RK DGLPV A++GFCNMLWKL++ SR ++ + Sbjct: 1 MKKGDHLFLVDGSAYIFRAYHALPPLTRKSDGLPVGAVSGFCNMLWKLVEESRDTNVGAV 60 Query: 60 --HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 HFAVIFDY + TFRNE+Y +YKANR + PE L PQ L+R A +AF +P IE +G+EA Sbjct: 61 PTHFAVIFDYSSTTFRNELYSEYKANREEPPEDLRPQFGLIRDAVRAFDLPCIEKEGYEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY A G VTI+S+DKDLMQLV P LYD +K++++ + V +K+G+ PE Sbjct: 121 DDLIATYATQAVAAGGDVTIVSSDKDLMQLVGPRVILYDQMKDKRLGPDEVKEKFGVYPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQAL GD+ DN+PGIPGIG KTAA LL+EYG LE +L A+ IKQ KRREN++E+A Sbjct: 181 KMIDLQALVGDTSDNVPGIPGIGPKTAAQLLEEYGTLEELLERATEIKQNKRRENLIEFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 ARLS+KLV L + P+ L+ L + + +G +L++FLKA+EFT L RVA T D DA+ Sbjct: 241 AQARLSKKLVTLDCETPLDTELDDLYIHEPDGEKLVAFLKAMEFTTLTRRVAATLDTDAS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS--EQTPQKLFLERL 355 +E L+I + + + + S +S TPQ+L + Sbjct: 301 EVESAKLEI----------------EDAPRGPDLDAAKNPASPGDSVFPATPQRLAAKLK 344 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + I+ +Y I + + +W+ + G +F T + A+ + ++++ + Sbjct: 345 DDAAGQAIDRSAYVTIRDIDTLNRWLDRARDRGVMAFDTETSELSAYKGHLVGVSMA-IT 403 Query: 416 QKDDTSFKVETIFIDLSVHTSQDST---GKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 + + + D + T DS G E L LK E++ LKIG N+KYD Sbjct: 404 PGEAAYVPLGHVAADADLLTDPDSAEALGGQIPMDEALVALKDVLEDKSILKIGQNVKYD 463 Query: 473 KLVLHRYGISMRGFEDIMLMSYVLD--SGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527 LV+ ++GI+M +D ML+SY LD SG + H + +++++L + + KE+ S +S+ Sbjct: 464 LLVMLQHGIAMTPIDDTMLISYALDASSGLAGHGMDELSERFLGHKPISYKELCGSGRSA 523 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 PI + +V E+A E+++V L++W +L+P+L E L HVYERL++P+ V+++ME G Sbjct: 524 KPIAAVEIDRVTEYASEDADVTLRIWQVLKPRLAAEGLAHVYERLERPLAPVLARMEQRG 583 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I +D+ +L ++S ++ +LE+ I ++GE+FN SPKQLG+ILF KL P G KTK+ Sbjct: 584 IMVDRQILSRLSGNFAQKQAALEDEIAKMAGEEFNPGSPKQLGEILFGKLGLPGGKKTKS 643 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQW T A+ LE + + + + +++WRQL+K+K TY D+LP+H+++ R+HT +S+AS Sbjct: 644 GQWSTDARVLEDLAAEGHELPRRVVDWRQLTKLKGTYTDTLPHHMDE-NGRIHTSFSMAS 702 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S EPNLQNIP++T+ G+ IR AF++P KKL+SADYSQIELRILAHIA I L Sbjct: 703 TTTGRLSSSEPNLQNIPVRTEEGRAIRTAFVAPKGKKLLSADYSQIELRILAHIADIPQL 762 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F+N +DIH M A+E+F V +E + P +RR AK INF IIYGIS F LA QL IPR E Sbjct: 763 KDAFQNGVDIHAMTASEMFNVPVEGMEPSVRRRAKAINFGIIYGISAFGLANQLAIPREE 822 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A YIKRYF RFPGI +Y++KTK F +++GYVET+FGRR HY +I + IR+ NERAA Sbjct: 823 AGQYIKRYFERFPGIRDYMDKTKAFAKKHGYVETLFGRRAHYPDITAKNPQIRSFNERAA 882 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQG+AADI RRAM+ + +L D L+ MLLQ+HDELVFEV E+EI +++ + Sbjct: 883 INAPIQGTAADIIRRAMVRMEGALADANLSAMMLLQVHDELVFEVEEDEIDETIEVVTNI 942 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A P++ L VPL+V K + NW+E Sbjct: 943 MEAAASPRVILSVPLEVEAKAALNWEE 969 >gi|75674555|ref|YP_316976.1| DNA polymerase I [Nitrobacter winogradskyi Nb-255] gi|74419425|gb|ABA03624.1| DNA polymerase A [Nitrobacter winogradskyi Nb-255] Length = 1010 Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/993 (45%), Positives = 654/993 (65%), Gaps = 36/993 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++ K +H A+IF Sbjct: 32 HVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPKNDRPTHLAIIF 91 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D VTFRN++YP YKA+RP P+ L+PQ L+R A +AF +P +E GFEADD+IATY Sbjct: 92 DKSEVTFRNKLYPAYKAHRPPAPDDLIPQFALIREAVKAFDLPCLEQIGFEADDLIATYV 151 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A + G TI+S+DKDLMQLV+ +YDT+K+ ++ I VI+K+G+PPEK+V +QAL Sbjct: 152 RQACERGATATIVSSDKDLMQLVNGCVTMYDTMKDRRLGIAEVIEKFGVPPEKVVEVQAL 211 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L A+ IKQ KRRE ++E AE AR+SR+ Sbjct: 212 AGDSVDNVPGVPGIGVKTAAQLITEYGDLDTLLARATEIKQPKRREALIENAEKARISRQ 271 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LV+L V + +PL+ L +++ + +LI+FLKA+EFT L RVA + +AA IEP D Sbjct: 272 LVLLDDHVALDVPLDDLAVQEPDARKLIAFLKAMEFTTLTKRVADYSEVNAAEIEP---D 328 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE-----------QTPQKLFLER 354 T + + T T SD +K +TP L R Sbjct: 329 AKHTSGRSAMVAKA---SATALTGDLFGSSDSVAKGTPAGTAKATGDTKMKTPAALAAAR 385 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 L+ + P+ D+Y I ++ W+ +++ GS +F+ + T+D ++ IA++ Sbjct: 386 LETVRALPVRPDAYETIRTLDRLRDWIARIDDNGSFAFEALAPTIDPMQTELSGIALALA 445 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFENEHFLKIG 466 +I LS S DS G ++ L LK E+ LKIG Sbjct: 446 PN--------HACYIPLSHKQSGDSAGLFAAGLAPDQIAIRDALELLKPILESRGHLKIG 497 Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS 523 N+K+ ++L ++GI M+ +DI L+SY LD+GR SHD+AS+A++WL + + E+ S Sbjct: 498 LNVKFSAVLLAQHGIVMQNHDDIELISYALDAGRGSHDLASLAKRWLGHATVSHGELTGS 557 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 ++ + D+++ + +A E +++ L+LW +L+P+L+ E++ VYE L++PMI ++QM Sbjct: 558 GRNRLAFDQVAIDRATAYAAEYADMTLRLWQVLKPRLVAERMNTVYETLERPMIATLAQM 617 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E GI ID+ +L ++S E +++ LE I L+GE N+ SPKQ+G+I+F K+ P G+ Sbjct: 618 ERRGITIDRQVLSRLSGEFAQSAARLEAEIQQLAGEPINVGSPKQIGEIMFGKMGLPGGS 677 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KTKTG W T+AQ L+++ + + IL+WRQ+SK+KSTY D+LP +++ +T+RVHT Y Sbjct: 678 KTKTGAWSTSAQILDELAEQGHDFPRKILDWRQVSKLKSTYTDALPEYVHPQTRRVHTTY 737 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 +LA+T TGRL+S EPNLQNIP++ + G+KIRRAFI+ P KL+SADYSQIELR+LA IA Sbjct: 738 ALAATTTGRLSSNEPNLQNIPVRNEEGRKIRRAFIAAPGHKLVSADYSQIELRLLAEIAD 797 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 I L Q F + LDIH M A+E+FGV ++ + ++RR AK INF IIYGIS F LA QL I Sbjct: 798 IPVLKQAFRDGLDIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYGISAFGLANQLGI 857 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 PR EAA YIK+YF RFPGI Y++ T+ F R++GYV T+FGR+ HY +I SP S R N Sbjct: 858 PREEAAAYIKKYFERFPGIRAYMDATREFCREHGYVTTLFGRKCHYPDIKSPNPSHRAFN 917 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ERAAINA +QGSAADI RRAM + +L L+ +MLLQ+HDEL+FEVP++E+ + Sbjct: 918 ERAAINARLQGSAADIIRRAMARMDDALAARNLSARMLLQVHDELIFEVPDDEVAATLPV 977 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 + H M+ A P + L VPL+V+ + ++NW E + Sbjct: 978 VQHVMQDAPFPAVLLSVPLQVDARAADNWDEAH 1010 >gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] Length = 1033 Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/1012 (44%), Positives = 658/1012 (65%), Gaps = 48/1012 (4%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +H+FLVDGSS+I+RA++A P LSRK DGL VNA+ GFCNMLWKLL++ ++ +H A Sbjct: 28 KGDHIFLVDGSSYIFRAYHALPPLSRKSDGLQVNAVLGFCNMLWKLLRDMPPDNRPTHLA 87 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 +IFD TFRNE+YP YKA+RP P+ L+PQ L+R A +AF +P +E GFEADD+IA Sbjct: 88 IIFDKSEATFRNEMYPAYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQSGFEADDLIA 147 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 TY A + G TI+S+DKDLMQLV+ +YDT+K+ +I + VI+K+G+PP+K+V + Sbjct: 148 TYVREACEAGATATIVSSDKDLMQLVTDCVTMYDTMKDRRIGVAEVIEKFGVPPDKVVEV 207 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L A IKQ KRRE ++E AE AR+ Sbjct: 208 QALAGDSVDNVPGVPGIGIKTAAQLITEYGDLETLLARAGEIKQPKRREALIENAEKARI 267 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-- 300 SRKLV+L V + +PL+ L + + + +LISFLKA+EFT L RVA D +++E Sbjct: 268 SRKLVLLDDHVKLDVPLDELAVHEPDARKLISFLKAMEFTTLTRRVADYAQIDPSDVEAE 327 Query: 301 --------PVVLDINTTENKGIAIETEIDR-DTTIKTSQFSSLSDQTSKINSEQ------ 345 P+ ++ G D + ++Q S S + S S + Sbjct: 328 AALKSSPLPLAGEVGARSATGGGTAASGDLFSEQVPSTQPSPASGRGSAQQSGEGGALNA 387 Query: 346 ------------TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFK 393 +PQ L R + + P++ +Y I ++ W+ ++ G + Sbjct: 388 GRGRDGRPGEVLSPQILAARRAETARKIPVDRTAYKTIRTLDELHGWIARIHDAGFVAVD 447 Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTL 445 I ++D ++ IA++ + +I L + D +G Sbjct: 448 AIATSIDPMQAELCGIALALAPN--------DAAYIPLGHRQTGDGSGLFAAGLAPDQLG 499 Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDI 505 +E L LK E+ KIG NIK+ ++L ++GI++R +D+ LMSY LD+GR SH + Sbjct: 500 AREALDALKPLLESAGLAKIGFNIKFTAVLLAQHGITLRNIDDLQLMSYALDAGRGSHGL 559 Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 ++++ L +T E+ S K+ I D++ + E+A E ++V L+LW +L+P+L+ Sbjct: 560 DALSESNLGHTLHALGELTGSGKAKIGFDQVPIERATEYAGERADVALRLWRVLKPRLVA 619 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 E+++ VYE L++P++ V+++ME GI ID+ +L ++SA+ ++ +E I +L+GE N Sbjct: 620 ERMMAVYETLERPLVGVLARMERRGISIDRSVLSRLSADFAQTAARIEAEIRELAGEDIN 679 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 + SPKQLGDILF K+ P G+KTKTG W T+AQ L+++ + + IL+WRQ+SK++S Sbjct: 680 IGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRS 739 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D+LPN+++ +TQRVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P Sbjct: 740 TYTDALPNYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIASPG 799 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 KL+SADYSQIELR+L+ +A++ L + F++ +DIH M A+E+FGV +E + ++RR AK Sbjct: 800 YKLVSADYSQIELRLLSEVAEVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAK 859 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 INF IIYGIS F LA QL IPR EA YIKRYF RFPGI Y+++T++F R +GYVET+ Sbjct: 860 AINFGIIYGISAFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFCRAHGYVETL 919 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 FGR+ HY +I + SIR NERAAINA +QGSAADI RRAM + +L + KL+ +MLL Sbjct: 920 FGRKCHYPDIKASNPSIRAFNERAAINARLQGSAADIIRRAMGRMEDALAEKKLSAQMLL 979 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q+HDEL+FEVP++E+ ++ H M+ A P + L VPL+V+ + ++NW E Sbjct: 980 QVHDELIFEVPDDEVAATLPVVRHVMQDAPFPAVLLNVPLQVDARAADNWDE 1031 >gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1] gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1] Length = 979 Score = 903 bits (2333), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/988 (45%), Positives = 641/988 (64%), Gaps = 42/988 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 ++K +HLFLVDGS +I+RA++A P L+RK DG+PV A+AGFCNML+KL+++++ E +H Sbjct: 18 LKKGDHLFLVDGSGYIFRAYHALPPLTRKSDGMPVGAVAGFCNMLYKLIEDTKDEFEPTH 77 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AVIFD A TFRN+IYP+YKANR + E L PQ LVR AT+AFG+P IE +G+EADDI Sbjct: 78 LAVIFDAAAKTFRNDIYPEYKANRVEPSEDLRPQFALVRDATRAFGVPCIEKKGYEADDI 137 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IATY +A + G VTI+S+DKDLMQLV+ + DT+K + I E VI+K+G+PPEK+V Sbjct: 138 IATYARLAHEAGARVTIVSSDKDLMQLVNDNVDMLDTMKLKTIAREQVIEKFGVPPEKVV 197 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +QAL GDS DN+PG+PGIG KTAA L+ EYG+LE +L A IKQ+KRREN++E+AE A Sbjct: 198 DVQALAGDSTDNVPGVPGIGIKTAAQLIGEYGDLETLLARAGEIKQQKRRENLIEFAEQA 257 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD----- 295 R+SR+LV L +VP+ PLE + + + + LI F K +EF L RV ++ D Sbjct: 258 RISRRLVELDNNVPLEEPLEGMGVREPDPETLIGFFKDMEFNTLTRRVGERFNIDVDAIP 317 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 AA ++ D G E + ++ T +T++ + I+++ Sbjct: 318 AAGKHALITDGALAAPAGE--EPKKEKQTVARTARGGTPGAVPKGIDAD----------- 364 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 N+ +Y + D+ +W+ + G + TD++ ++ + +++S L Sbjct: 365 -------FNDANYVAVTALADLDEWIARAREQGFLAVDTETDSLFPMQARLVGVSLSLLP 417 Query: 416 QKDDTSFKVETIFIDLSVHTS-----QDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNI 469 E +I L D+ G+ + KE ++ LK E+ LKIG N+ Sbjct: 418 G--------EACYIPLQHGAGGGLDFADAGGQPQIPLKEAIARLKPLLEDPSILKIGQNL 469 Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526 K+D VL ++GI ++G +D MLMSY LD+G H + +++ L + + E+ K+ Sbjct: 470 KFDMTVLRQHGIQLKGLDDTMLMSYALDAGVHGHGMDELSELHLGHKPISFAEVAGKGKA 529 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 I D++ + +A E+++V L+LW +L+P+L+ E+ + VYE L++P++ V+++ME Sbjct: 530 QITFDQVPVDRATAYAAEDADVTLRLWHILKPRLVAERRVTVYETLERPLVSVLAEMERA 589 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G+++D+ +L ++S + S+ + E+ IY+L+GE+FN+ SPKQLG+ILF K G KTK Sbjct: 590 GVKVDKAVLARLSGDFSQKMAQYEDEIYELAGERFNIGSPKQLGEILFDKQSLEGGRKTK 649 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 TG W T A LE + + + + +L+WR LSK+KSTY D+LP +IN T R+HT YSLA Sbjct: 650 TGAWSTDADTLEALAAKGHELPQRVLDWRGLSKLKSTYTDALPEYINPETGRIHTCYSLA 709 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 ST TGRLAS EPNLQNIP++T+ G+KIR AF++ LISADYSQIELR+LAHIA I Sbjct: 710 STSTGRLASTEPNLQNIPVRTEDGRKIRTAFVAEKGNLLISADYSQIELRLLAHIADIEA 769 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F LDIH M A+E+FGV IE + +RR AK INF IIYGIS F LA QL IPR Sbjct: 770 LKKAFAEGLDIHAMTASEMFGVPIEGMESSVRRRAKAINFGIIYGISAFGLANQLGIPRQ 829 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA +YI RYF RFPGI Y++ T++F +NGYVETIFGRRIH INS + ++ ERA Sbjct: 830 EAGEYIDRYFKRFPGIRAYMDDTRDFAHKNGYVETIFGRRIHLPAINSKNPAEKSFMERA 889 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAPIQGSAADI RRAMI + ++L D KLA +MLLQ+HDEL+FEVPE+E S+++ Sbjct: 890 AINAPIQGSAADIIRRAMIRMPQALADAKLAARMLLQVHDELIFEVPEKEAEKTSKVVSR 949 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A P + L VPL V+ + + NW E Sbjct: 950 IMSDAAAPAVALTVPLDVDARAAKNWDE 977 >gi|85713433|ref|ZP_01044423.1| DNA polymerase I [Nitrobacter sp. Nb-311A] gi|85699337|gb|EAQ37204.1| DNA polymerase I [Nitrobacter sp. Nb-311A] Length = 1020 Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/995 (45%), Positives = 664/995 (66%), Gaps = 34/995 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++ K+ +H A++F Sbjct: 32 HVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPKDDRPTHLAIVF 91 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D VTFRN++YP YKA+RP P+ L+PQ L+R A +AF +P +E GFEADD+IATY Sbjct: 92 DKSEVTFRNKLYPAYKAHRPPAPDDLIPQFALIREAVKAFDLPCLEQAGFEADDLIATYV 151 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A + G TI+S+DKDLMQLV+ +YDT+K+ ++ I VI+K+G+PP+K++ +QAL Sbjct: 152 RQACERGATATIVSSDKDLMQLVTDCVTMYDTMKDRRLGIPEVIEKFGVPPDKVIEVQAL 211 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L A+ IKQ KRRE ++E AE AR+SR+ Sbjct: 212 AGDSVDNVPGVPGIGVKTAAQLITEYGDLDTLLARAAEIKQPKRREALIENAEKARISRQ 271 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LV+L V + +PL+ L +++ + +LI+FLKA+EFT L RVA + +AA IEP + Sbjct: 272 LVLLDDHVALDVPLDDLAVQEPDARKLIAFLKAMEFTTLTKRVADYSEINAAEIEPDAKN 331 Query: 306 I-NTTENKGIA----IETEIDRDTTIKTSQFSS---------LSDQTSKINSE-QTPQKL 350 N + K ++ + E I F S +S + ++E +TP L Sbjct: 332 ASNMIDAKALSAPSPLAGEGRGGGAISGDLFGSSDNVAKKAPVSGAKATSHTEIKTPAAL 391 Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 RL+ + P+ DSY I ++ W+ +++ GS +F+ + T+D ++ ++ Sbjct: 392 AAARLEAVRALPVRPDSYETIRTLDRLRDWIARIDDNGSFAFEALAPTIDPMQAELAGLS 451 Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFENEHF 462 ++ + +I L + DS G ++ L LK E+ Sbjct: 452 LALAPN--------DACYIPLGHKQAGDSAGLFAAGLAPDQIAIRDALELLKPILESGGH 503 Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKE 519 LKIG NIK+ ++L ++GI M+ +D+ L+SY LD+GR SHD+AS+A++WL +T E Sbjct: 504 LKIGLNIKFSAVLLAQHGIVMQNHDDVELISYTLDAGRGSHDLASLAKRWLGHTTLSHGE 563 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 + S ++ + +D+++ + +A E +++ L+LW +L+P+L+ E++ VYE L++PM Sbjct: 564 LTGSGRNRLAVDQVAIDRATAYAAEYADMTLRLWQVLKPRLVAERMNAVYETLERPMTAT 623 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 +++ME GI ID+ +L ++S E+++ LE I L+GE N+ SPKQ+GDI+F K+ Sbjct: 624 LARMERRGITIDRQVLSRLSGELAQTAARLEAEIQQLAGEPINVGSPKQIGDIMFGKMGL 683 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 P G+KTKTG W T+AQ L+++ + + IL+WRQ+SK+KSTY D+LP ++N +T+RV Sbjct: 684 PGGSKTKTGAWSTSAQVLDELAEQGHDFPRKILDWRQVSKLKSTYTDALPEYVNPQTRRV 743 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 HT Y+LA+T TGRL+S EPNLQNIP++ + G+KIRRAFI+ P +L+SADYSQIELR+LA Sbjct: 744 HTTYALAATTTGRLSSNEPNLQNIPVRNEEGRKIRRAFIAAPGHRLVSADYSQIELRLLA 803 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 IA I L Q F + LDIH M A+E+FGV ++ + ++RR AK INF IIYGIS F LA Sbjct: 804 EIADIPVLKQAFRDGLDIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYGISAFGLAN 863 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL IPR EAA YIK+YF RFPGI Y++ T++F R++GYV T+FGR+ HY +I +P S Sbjct: 864 QLGIPREEAAAYIKKYFERFPGIRAYMDATRDFCREHGYVTTLFGRKCHYPDIKAPNPSH 923 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R NERAAINA +QGSAADI RRAM+ + +L KL+ +MLLQ+HDEL+FEVP+EE+ Sbjct: 924 RAFNERAAINARLQGSAADIIRRAMVRMDDALAAKKLSARMLLQVHDELIFEVPDEEVAA 983 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ H M+ A P + L VPL+V+ + ++NW E Sbjct: 984 TLPVVQHVMQDAPFPAVLLSVPLQVDARAADNWDE 1018 >gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14] gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14] Length = 1014 Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/991 (45%), Positives = 651/991 (65%), Gaps = 37/991 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++ K+ +H A+IF Sbjct: 37 HVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPKDDKPTHLAIIF 96 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D VTFRN++YP YKA+RP P+ L+PQ L+R A +AF +P IE GFEADD+IATY Sbjct: 97 DKSEVTFRNKLYPAYKAHRPPAPDDLIPQFALIREAVKAFDLPCIEQGGFEADDLIATYV 156 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A + G TI+S+DKDLMQLV+ ++DT+K+ ++ I VI+K+G+PPEK+V +QAL Sbjct: 157 RQACERGATATIVSSDKDLMQLVTDCVTMFDTMKDRRLGIAEVIEKFGVPPEKVVEVQAL 216 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS+DN+PG+PGIG KTAA L+ EYG+LE +L AS IKQ KRRE ++E AE AR+SR+ Sbjct: 217 AGDSVDNVPGVPGIGVKTAAQLITEYGDLETLLAQASEIKQPKRREALIENAEKARISRQ 276 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LV+L V + +PL+ L +++ + +LI+FLKA+EFT L RVA + +AA IEP Sbjct: 277 LVLLDDHVALDVPLDDLAVQEPDARKLIAFLKAMEFTTLTKRVADYSEVNAAEIEP---- 332 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE-----------QTPQKLFLER 354 +N A T TS SD +K S +TPQ L R Sbjct: 333 --DRKNASGASSTAAKASAEAVTSDLFG-SDGVAKATSAGRTRATSDTAIKTPQALAAAR 389 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 L+ + + P++ Y I +Q W+ ++ GS + + T+D ++ IA++ Sbjct: 390 LEAVRKLPVDRTQYETIRTLDRLQHWIARIANHGSFVVEALAPTIDPMQAELSGIALALA 449 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFENEHFLKIG 466 ++ L+ + DS G ++ L LK E+ LK+G Sbjct: 450 PNA--------ACYVPLNHKQAGDSAGLFAAGLAPDQIAIRDALDLLKPLLESGGHLKVG 501 Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 N+K+ ++L ++GI M+ +D+ L+SY LD+GR +HD+ ++AQ+WL +T E++ S Sbjct: 502 FNVKFTAVLLAQHGIVMQNNDDVELISYALDAGRGAHDLEALAQRWLDHTALNYGELIGS 561 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 ++ + D+++ + +A E + + L+LW +L+P+L+ E++ VYE L++PMI +++M Sbjct: 562 GRNKLAFDQVTIDRATTYAAEYAALTLRLWQVLKPRLVAERMNSVYETLERPMIATLARM 621 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E GI ID+ +L ++S E ++ LE I L+GE N+ SPKQ+G+I+F K+ P G+ Sbjct: 622 ERRGITIDRQVLSRLSGEFAQTAARLEAEIQKLAGEPINVGSPKQIGEIMFGKMGLPGGS 681 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KTKTG W T+AQ L+ + + + IL+WRQ+SK+KSTY D+LP ++N +T RVHT Y Sbjct: 682 KTKTGAWSTSAQILDDLAEQGHDFPRKILDWRQVSKLKSTYTDALPEYVNPQTSRVHTTY 741 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 +LA+T TGRL+S EPNLQNIP++ + G+KIRRAFI+ P KL+SADYSQIELR+LA IA Sbjct: 742 ALAATTTGRLSSNEPNLQNIPVRNEEGRKIRRAFIATPGHKLVSADYSQIELRLLAEIAD 801 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 I L Q F + LDIH M A+E+FGV + + ++RR AK INF IIYGIS F LA QL I Sbjct: 802 IPVLKQAFRDGLDIHAMTASEMFGVPVTGMPGEIRRRAKAINFGIIYGISAFGLANQLGI 861 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 PR EA YIK+YF RFPGI Y++ T++F R++GYVET+FGR+ HY +I SP S R N Sbjct: 862 PREEAGTYIKKYFERFPGIRAYMDATRDFCREHGYVETLFGRKCHYPDIKSPNPSHRAFN 921 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ERAAINA +QG+AADI RRAM+ + +L KL+ +MLLQ+HDEL+FEVP++E+ + Sbjct: 922 ERAAINARLQGTAADIIRRAMVRMDDALAAKKLSARMLLQVHDELIFEVPDDEVAATLPV 981 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + H M+ A P + L VPL+V+ + ++NW E Sbjct: 982 VQHVMQDAPFPAMLLSVPLQVDARAADNWDE 1012 >gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2] gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2] Length = 1032 Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1012 (43%), Positives = 661/1012 (65%), Gaps = 48/1012 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL+ ++ +H A+I Sbjct: 29 DHIFLVDGSSYIFRAYHALPPLTRKSDGLQVNAVLGFCNMLWKLLREMPPDNRPTHLAII 88 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFRN++YPDYKA+RP P+ L+PQ L+R A +AF +P +E GFEADD+IATY Sbjct: 89 FDKSEHTFRNQLYPDYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQSGFEADDLIATY 148 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A + G TI+S+DKDLMQLV+ +YDT+K+ +I I VI+K+G+PPEK+V +QA Sbjct: 149 VREACERGATATIVSSDKDLMQLVTDCVTMYDTMKDRRIGIAEVIEKFGVPPEKVVEVQA 208 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L A IKQ KRRE ++E AE AR+SR Sbjct: 209 LAGDSVDNVPGVPGIGIKTAAQLINEYGDLDTLLARAGEIKQPKRREALIENAEKARISR 268 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE---- 300 +LV+L V + +PL+ L + + + +LISFLKA+EFT L RVA D +++E Sbjct: 269 QLVLLDDKVKLDVPLDELAVHEPDARKLISFLKAMEFTTLTRRVADYSQIDPSDVEAEAA 328 Query: 301 ------PVVLDINTTENKGIAIETEIDR-DTTIKTSQFSSLSDQTSKINSEQ-------- 345 P+ ++ G T D + + Q S + S +S + Sbjct: 329 LKSSPLPLAGEVGARSATGGGTSTGGDLFSGQVPSPQPSPAGGRGSAPHSAEGGPLNAGR 388 Query: 346 ----------TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII 395 +PQ L +R + + P++ +Y + ++Q W+ ++ G+ + I Sbjct: 389 GRDGQPGEVLSPQILAAKRAEAARKIPVDRTAYKTVRTRDELQGWIARIHDAGAFAVDAI 448 Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTK 447 ++D ++ IA+S L D +I L + D +G + Sbjct: 449 ATSIDPMQAELCGIALS-LGPND-------ACYIPLGHRQTGDGSGLFAAGLAPDQLGAR 500 Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507 ++L L+ ++ KIG NIK+ ++L ++G+++R +D+ L+SYVLD+GR SH + + Sbjct: 501 DVLDALRPLLDSAGLAKIGFNIKFTAVLLAQHGVTLRNIDDVQLISYVLDAGRGSHGLDA 560 Query: 508 IAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 +++ L +T + S K+ I D++ + E+ E S+V L+LW +L+P+L+ E+ Sbjct: 561 LSESNLGHTLHVLGALTGSGKAKIAFDQVPIDRATEYGGERSDVALRLWRVLKPRLVAER 620 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 ++ VYE L++P++ V+++ME GI ID+ +L ++SA+ ++ +E I +L+GE N+ Sbjct: 621 MMAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELAGEDINIG 680 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLGDILF K+ P G+KTKTG W T+AQ L+++ + + IL+WRQ+SK++STY Sbjct: 681 SPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTY 740 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 D+LP +++ +TQRVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAF++ P + Sbjct: 741 TDALPTYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGHR 800 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L+SADYSQIELR+L+ +A + L + F++ +DIH M A+E+FGV +E + +RR AK I Sbjct: 801 LVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSDIRRRAKAI 860 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF IIYGIS F LA QL IPR EA YIKRYF RFPGI Y+++T++F R +GYVET+FG Sbjct: 861 NFGIIYGISAFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFCRTHGYVETLFG 920 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 R+ HY +I + SIR NERAAINA +QGSAADI RRAM+ + +L + KLA +MLLQ+ Sbjct: 921 RKCHYPDIKASNPSIRAFNERAAINARLQGSAADIIRRAMVRMEDALAEKKLAAQMLLQV 980 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 HDEL+FEVPE+E+T ++ H M+ A P + L VPL+V+ + ++NW E + Sbjct: 981 HDELIFEVPEDEVTATLPVVSHVMQDAPFPAVILNVPLQVDARAADNWDEAH 1032 >gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2] gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2] Length = 1008 Score = 889 bits (2296), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/991 (45%), Positives = 656/991 (66%), Gaps = 30/991 (3%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +H+FLVDGS +I+RA++A P L+RK DGL VNA+ GFCNMLWKL+++ ++ +H A Sbjct: 27 KGDHVFLVDGSGYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLMRDMPPDNRPTHLA 86 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 ++FD VTFRN+IYP+YKA+RP P+ L+PQ L+R A +AF +P +E GFEADD+IA Sbjct: 87 IVFDKSEVTFRNKIYPEYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQGGFEADDLIA 146 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 TY A + G TI+S+DKDLMQLV+ +YDT+K+ ++ I VI+K+G+PPEK+V + Sbjct: 147 TYVRQACERGATATIVSSDKDLMQLVTDCVTMYDTMKDRRLGIPEVIEKFGVPPEKVVEV 206 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L A IKQ KRRE+++E+A AR+ Sbjct: 207 QALAGDSVDNVPGVPGIGIKTAAQLITEYGDLETLLQRAGEIKQPKRRESLIEHAAKARI 266 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP- 301 SR+LV+L +V + +PL+ L + + + +LI+FLKA+EF+ L RVA DAA++ P Sbjct: 267 SRELVLLDNNVKLDVPLDELAVHEPDSRKLIAFLKAMEFSTLTRRVAEYAQIDAADVSPD 326 Query: 302 --------VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 V+ ++ + + E D K + +S + + + +PQ L Sbjct: 327 EHLKSPLATVVGQDSPQTLPLGGEP----DARAKGTSATSATSAGAAPATAHSPQALAAV 382 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 R++K + I+ Y I ++ W+ + +G + I ++D + IA++ Sbjct: 383 RIEKAATGKIDRGKYQTIRTLDELNAWITRAHDLGHVAIDIKATSIDPMQADICGIALAL 442 Query: 414 LDQK-------DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466 K S E +F S + G+ K L+K E+E LK G Sbjct: 443 TPNKACYIPLGHKKSGGGEDLF------ASGLAEGQIEAAKA-FDVLRKLMESEAVLKSG 495 Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKS 523 +IK+ ++L ++ I++R +D+ LMSY LD+GR +HDI S+AQKWL++ +++ S Sbjct: 496 LDIKFISVMLAQHKITLRTTDDVQLMSYALDAGRGAHDIESLAQKWLAHAAIKHGDVIGS 555 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 ++ + +D+++ + E+ E +++I++LWLL++ +LI E++ +VYE L++P+I V+++M Sbjct: 556 GRNKLSLDQVTIERATEYGAETADIIIRLWLLMKARLISERMNNVYESLERPLIGVLARM 615 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E GI ID+ +L ++S + ++ LE+ I ++GE N SPKQLGD++F K+ P G Sbjct: 616 ERRGIMIDRQVLSRLSGDFAQTASRLEDEIRKIAGEDINPGSPKQLGDVIFGKMGLPGGQ 675 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KTKTG W T+A LE + + + IL+WRQ+SK+KSTY D+LPN++N +TQRVHT Y Sbjct: 676 KTKTGAWSTSASILEDLAEEGHVFPRKILDWRQVSKLKSTYTDALPNYVNPQTQRVHTTY 735 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 +LA+T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ KL+SADYSQIELR+LA IA Sbjct: 736 ALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAEKGHKLVSADYSQIELRLLAEIAD 795 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 I L Q F + LDIH M A+E+FGV ++ + ++RR AK INF IIYGIS F LA QL I Sbjct: 796 IPVLKQAFHDKLDIHAMTASEMFGVPVKDMPAEVRRRAKAINFGIIYGISAFGLANQLGI 855 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 PR EA YIK+YF RFPGI Y++ T++F R++GYVET+FGR+ HY +I + +S+R N Sbjct: 856 PREEAGAYIKKYFERFPGIRAYMDATRDFCREHGYVETLFGRKCHYPDIKASNASLRAFN 915 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ERAAINA +QG+AADI RRAMI + +L + KLA +MLLQ+HDELVFEVP+ E+ + Sbjct: 916 ERAAINARLQGTAADIIRRAMIRMEDALAEKKLAARMLLQVHDELVFEVPDSEVGDTIPV 975 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I ME A P L VPL V+ + ++NW E Sbjct: 976 IQEVMENAAFPAARLSVPLHVDARAAHNWDE 1006 >gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3] Length = 925 Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust. Identities = 459/943 (48%), Positives = 632/943 (67%), Gaps = 32/943 (3%) Query: 44 MLWKLLQNSRKESIA---SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100 MLWKLL ++R +I +H A+IFDY + TFR +IYP YKANR PE L+PQ L+R Sbjct: 1 MLWKLLCDARNTAIGIVPTHIAIIFDYSSNTFRKQIYPQYKANRTAPPEDLIPQFALIRQ 60 Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160 AT+AF +P IE +GFEADD+IATY +A + G TIIS+DKDLMQLV+ LYD++K+ Sbjct: 61 ATEAFNLPCIEKEGFEADDLIATYAQLATQVGAKTTIISSDKDLMQLVNTHVSLYDSMKD 120 Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220 + I I VI+KWG+ PEKM+ QALTGD DNIPGIPGIG K AA LL ++G+L+ +L Sbjct: 121 KHIGISEVIEKWGVMPEKMIDFQALTGDPTDNIPGIPGIGPKIAAQLLDQFGSLDLLLQR 180 Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280 + IKQ KRRENI Y+E A++SR+LV L+ DVPI L+H +LE NGPRLI+FLKA+E Sbjct: 181 VTEIKQIKRRENIQAYSEQAKISRELVKLKKDVPIDKNLDHFVLEPQNGPRLIAFLKAME 240 Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340 FT L RVA C+AA I+ + +DI E K I E ++ R T+ F SD + Sbjct: 241 FTALTRRVAKETSCNAAVIDALEIDI---EWKKITCEPDL-RAKEDDTALFHDFSDNS-- 294 Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400 PQ L +R ++ I +Y I++ + +++W+ + + G SF T ++D Sbjct: 295 ------PQNLAQKRKDQVLIQKIVRGAYKTILDEETLKEWLLEAKEQGYFSFDTETTSLD 348 Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLS-VHTSQDSTGKNTLTKEI-----LSYLK 454 +K I +++ K +I L V D G + ++I L+ LK Sbjct: 349 PMQAKLIGFSLALQPGK--------AAYIPLEHVAGEDDLWGDRRIVQQIETQKALALLK 400 Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL- 513 EN+ LKIG NIKYD LV+ +Y I MR F+D ML+SY L++G S+H + ++++WL Sbjct: 401 PILENQAILKIGQNIKYDWLVMKQYNIVMRSFDDTMLLSYALEAGISTHGMDILSERWLG 460 Query: 514 --SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 S T K++ + + +I Q +A E++++ L+LW +L+P+L+ +++ +YER Sbjct: 461 HKSITYKDLTYNGRKVNSFAQIDLKQATLYAAEDADITLRLWQVLKPQLVAQRMTKIYER 520 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 LD+P+I+++++ME GI +D+ +L ++S E+++ L+LEE IY L GEKFN++SPKQLGD Sbjct: 521 LDRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQLVGEKFNIASPKQLGD 580 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF K+ P G+KTK GQW T+AQ LE++ + + + I+ WRQL+K+KSTY D+LP++ Sbjct: 581 ILFGKIGLPGGSKTKNGQWSTSAQTLEELAAEGHILPRKIVNWRQLTKLKSTYTDALPSY 640 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 I +T RVHT YSLA+T TGRL+S EPNLQNIP++T G+KIR AFI+ L+SADYS Sbjct: 641 ILPKTGRVHTNYSLATTSTGRLSSSEPNLQNIPVRTAEGRKIRTAFIASKGYLLLSADYS 700 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELR+LAH A IT L + F DIH M AA++FGV +E +S ++RR AK INF IIYG Sbjct: 701 QIELRVLAHFADITALKEAFAQGQDIHAMTAAQMFGVAVEGMSSEIRRRAKAINFGIIYG 760 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 ISPF LA QL I R EA+ YI+ YF RFPGI +Y+EKTK F R +GYVETIFGRRIH E Sbjct: 761 ISPFGLANQLGISRKEASHYIQLYFERFPGIKDYMEKTKMFARHHGYVETIFGRRIHCPE 820 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 I + +R NERAAINAPIQGSAADI RRAMI + +LE KL+ KMLLQ+HDEL+FE Sbjct: 821 IKAVNPQVRAFNERAAINAPIQGSAADIIRRAMIQMENALEKEKLSAKMLLQVHDELIFE 880 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 VP+ E T + ++ ME A +P ++L VPL+V + + NW E Sbjct: 881 VPKSESTKTAILVRKVMENATMPALSLSVPLEVKVITAQNWDE 923 >gi|209886676|ref|YP_002290533.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5] gi|209874872|gb|ACI94668.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5] Length = 1003 Score = 882 bits (2279), Expect = 0.0, Method: Compositional matrix adjust. Identities = 446/997 (44%), Positives = 650/997 (65%), Gaps = 39/997 (3%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +H+FLVDGS +I+RA++A P L+RK DGL +NA+ GFCNMLWKL+++ E +H A Sbjct: 23 KGDHVFLVDGSGYIFRAYHALPPLNRKSDGLQINAVLGFCNMLWKLMRDMPPEDRPTHLA 82 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 ++FD VTFRN IY DYKA+RP P+ L+PQ L+R A AF +P +E GFEADD+IA Sbjct: 83 IVFDKSEVTFRNTIYSDYKAHRPPAPDDLIPQFALIREAVHAFDLPCLEQGGFEADDLIA 142 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 TY A G + TI+S+DKDLMQLV+ +YDT+K+ ++ + VI+K+G+PP+K+V + Sbjct: 143 TYVREACARGASATIVSSDKDLMQLVTDCVTMYDTMKDRRLGVPEVIEKFGVPPDKVVEV 202 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L A+ IKQ KRRE ++ AE AR+ Sbjct: 203 QALAGDSVDNVPGVPGIGVKTAAQLITEYGDLETLLSRATEIKQPKRREALIANAEKARI 262 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP- 301 SR+LV+L V + +PL+ L + + + +LISFLKA+EF+ L RVA + DA+++ P Sbjct: 263 SRQLVLLDDKVKLDVPLDELAIHEPDYRKLISFLKAMEFSTLTRRVADYAEIDASSVMPD 322 Query: 302 ----VVLDINTTENKGIAIETEIDRDT----TIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 +E + + DT T+ T+ ++L+ + + S PQ L Sbjct: 323 ERLKSAFAGGPSEASPQTLPLGGEPDTRARGTVSTAPVTTLA--AAPVFS---PQALAAS 377 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 R + ++ ++ Y I ++ WV + +G + I + D + IA++ Sbjct: 378 RAKDVAAAKVDRTKYATIRTADELAAWVTRAHDLGHVAIAIKATSFDPMQADICGIALAL 437 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL-----------TKEILSYLKKFFENEHF 462 E +I L + + G + L ++L L E+E Sbjct: 438 SPN--------EAAYIPLG---HKKAGGGDDLFASGLADGQIEAAKVLETLTALLESEAV 486 Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519 LK G +IK+ ++L ++ I++R +D+ LMSY LD+GRSSHDI ++A++WL + + Sbjct: 487 LKTGFDIKFAAVLLAQHNITLRTVDDVQLMSYALDAGRSSHDIEALAEQWLGHEMIAHAD 546 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 I+ S ++ I +D++ + E+ E+++VI++LWL+ + +LI E++ +VYE L++P+IDV Sbjct: 547 IVGSGRNRISLDQVEIPRAAEYGAESADVIMRLWLVFKARLISERMNNVYESLERPLIDV 606 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 +++ME GI ID+ +L ++S E +++ LE I +++GE N SPKQLGD++F K+ Sbjct: 607 LARMERRGIMIDRQVLARLSGEFAQSAARLEAEIREIAGEDINPGSPKQLGDVMFGKMGL 666 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 P G KTKTG W TTA LE + + + IL+WRQ+SK+KSTY D+LP H+ +TQRV Sbjct: 667 PGGQKTKTGAWSTTASILEDLAEAGHDFPRKILDWRQVSKLKSTYTDALPTHLLPQTQRV 726 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 HT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ KL+SADYSQIELR+LA Sbjct: 727 HTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAKGHKLVSADYSQIELRLLA 786 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 IA I L Q F++ LDIH M A+E+FGV I+ + ++RR AK INF IIYGIS F LA Sbjct: 787 EIADIPVLKQAFKDGLDIHAMTASEMFGVPIKDMPGEVRRRAKAINFGIIYGISAFGLAN 846 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL IPR EA YIK+YF RFPGI Y++ T++F R++GYV T+FGR+ HY +I + S+ Sbjct: 847 QLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCREHGYVTTLFGRKCHYPDIKASNPSL 906 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R NERAAINA +QG+AADI RRAMI + +L KLA +MLLQ+HDELVFEVP+ E+ Sbjct: 907 RAFNERAAINARLQGTAADIIRRAMIRMEDALTQKKLAARMLLQVHDELVFEVPDSEVDK 966 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 +I ME+A P L VPL+V+ + ++NW E + Sbjct: 967 TLPVIREVMEQAPFPATALSVPLRVDARAADNWDEAH 1003 >gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] Length = 1021 Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1013 (43%), Positives = 658/1013 (64%), Gaps = 49/1013 (4%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL+ + +H A Sbjct: 19 KGDHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLREMPNDERPTHLA 78 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 +IFD TFRNE+YP YKA RP P+ L+PQ L+R A +AF +P +E GFEADD+IA Sbjct: 79 IIFDKAEKTFRNELYPLYKAQRPPAPDDLIPQFALIREAVRAFDLPCLEQIGFEADDLIA 138 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 TY A + G TI+S+DKDLMQLV+ ++DT+K+ +I I VI+K+G+PP+K+V + Sbjct: 139 TYVRQACERGATATIVSSDKDLMQLVTDCVTMFDTMKDRRIGIPQVIEKFGVPPDKVVEV 198 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L A+ IKQ KRRE ++ AE AR+ Sbjct: 199 QALAGDSVDNVPGVPGIGVKTAAQLINEYGDLDTLLARAAEIKQPKRREALIANAEKARI 258 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 SR+LV+L V + +PL+ L + + + +LI+FLKA+EF+ L RVA D A++E Sbjct: 259 SRQLVLLDDKVALDVPLDELAVHEPDARKLIAFLKAMEFSTLTRRVAEYSQIDPADVEAD 318 Query: 303 VLDINTT--------ENKGIAIETEID--------------RDTTIKTSQFSSLSDQTSK 340 + T E +G D + +T Q L+ + Sbjct: 319 AAVKSGTSSPSPLAGEGRGGGATDAGDLFGAPPSPTLPRKGGGSAPQTGQ--GLASSAPQ 376 Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIG------SASFKI 394 + TPQ L R ++ + P+N D Y + ++ W+ K+ +G A+F I Sbjct: 377 SSDALTPQLLAAARAEEARKIPVNRDGYATLRTRDELHGWIAKIHDLGHVALEAKATFDI 436 Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLT 446 + +D ++ +A++ E ++ L S D+ G Sbjct: 437 KSAVVDPMQAELTGLALALGPN--------EACYVPLGHRQSGDAAGLFASGLEPDQIAA 488 Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506 ++ L L+ E+ LKIG NIK+ ++L ++GI+++ +D+ LMSY LD+GR +H + Sbjct: 489 RDALEALRPILESPGVLKIGFNIKFTAVLLAQHGITLQNADDVQLMSYALDAGRHAHGLD 548 Query: 507 SIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 ++A+ WL + + E++ S K+ + D+++ + +A E+++V L+LW +L+P+L+ E Sbjct: 549 ALAETWLGHKTLSYGEVIGSGKAKLSFDQVAIDRATCYAAEDADVALRLWRVLKPRLVAE 608 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 ++ VYE L++P+I V+++ME GI ID+ +L ++S + ++ +E I +++GE+ N+ Sbjct: 609 RMTTVYETLERPLIGVLARMERRGISIDRAVLARLSGDFAQTAARIEAEIREIAGEEINI 668 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 SPKQLGDILF K++ P G+KTKTG W T+AQ LE++ + + IL+WRQ+SK++ST Sbjct: 669 GSPKQLGDILFGKMQLPGGSKTKTGAWSTSAQVLEELAEQGHEFPRKILDWRQVSKLRST 728 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y D+LP +++ +T RVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P Sbjct: 729 YTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAPGH 788 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 KL+SADYSQIELR+LA IA I L Q F++ LDIH M A+E+FGV I+ + ++RR AK Sbjct: 789 KLVSADYSQIELRLLAEIADIPVLKQAFQDGLDIHAMTASEMFGVPIKDMPSEVRRRAKA 848 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 INF IIYGIS F LA QL IPR EA YIK+YF RFPGI Y++ T++F R +G+VET+F Sbjct: 849 INFGIIYGISAFGLANQLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCRAHGFVETLF 908 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 GR+ HY +I + +S+R NERAAINA +QG+AADI RRAM+ + +L + KL+ +MLLQ Sbjct: 909 GRKCHYPDIKASNASVRAFNERAAINARLQGTAADIIRRAMVRMEDALAEKKLSAQMLLQ 968 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 +HDEL+FEV ++E+ ++ M+ A P + L VPL+V+ + +NNW E + Sbjct: 969 VHDELIFEVADDEVAATLPVVQQVMQDAPFPAVLLSVPLQVDARAANNWDEAH 1021 >gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] Length = 1023 Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/990 (44%), Positives = 648/990 (65%), Gaps = 33/990 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++ ++ +H A++ Sbjct: 45 DHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPADNRPTHLAIV 104 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD VTFRN+IYP+YKA+RP P+ L+PQ L+R A +AF +P +E GFEADD+IATY Sbjct: 105 FDKSEVTFRNKIYPEYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQGGFEADDLIATY 164 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A G TI+S+DKDLMQLV+ +YDT+K+ +I I VI+K+G+PPEK+V +QA Sbjct: 165 AREASDRGATTTIVSSDKDLMQLVNDRITMYDTMKDRRIGIPEVIEKFGVPPEKVVEVQA 224 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS DN+PG+PGIG KTAA L+ +YG+LE +L A+ IKQ KRRE ++E AE AR+SR Sbjct: 225 LAGDSTDNVPGVPGIGIKTAAQLIVDYGDLEQLLFRATEIKQPKRREALIENAEKARISR 284 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 KLV+L V + +PL+ L + + + +LI+FLKA+EF+ L RVA D AN++ V Sbjct: 285 KLVLLDDKVELEVPLDDLAVHEPDARKLIAFLKAMEFSTLTRRVADYSQIDPANVDADV- 343 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQ--------FSSLSDQTSKINS-EQTPQKLFLERL 355 N++E +G R T+ TS ++ D+ K S + P L R Sbjct: 344 -ANSSEARG---GDSAARTTSSATSGDLFAAPAVTATGGDKGGKSASIKGAPISLAAARE 399 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + L + P++ Y I ++ ++ ++ G + +I +++D + +A+S Sbjct: 400 EALRKLPVDRGKYQAIKTLAELNAFIARIHDAGHVAIEIRANSIDPMQADLCGVALSLAP 459 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLT--------KEILSYLKKFFENEHFLKIGH 467 + ++ L+ S G + + L+ E+ LKIG Sbjct: 460 N--------DACYVPLAHKQSGGGAGLFDGGLAPDQVKHADAIDALRPVLESSGILKIGF 511 Query: 468 NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSR 524 ++K+ ++L ++GI++R +D L+SYVLD+GR SH + S+A++W + E+L S Sbjct: 512 DVKFTAVMLAQHGITLRNTDDAQLISYVLDAGRGSHGLESLAERWFGHAMLKEGELLGSG 571 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 K I D++ + + E +++ L++W +L+P+L+ E + VYE L++P++ V+++ME Sbjct: 572 KGKITFDQVPIDKAAPLSAEGADMALRVWRVLKPRLVAEHMTTVYETLERPLVAVLARME 631 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 GI ID+ +L ++S + ++ +E I +++GE N+ SPKQ+GDILF K+ P G K Sbjct: 632 RRGISIDRQVLSRLSGDFAQTAARVEAEIQEIAGEPVNVGSPKQIGDILFGKMSLPGGTK 691 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TKTG W TTAQ L+++ + + K ILEWRQ+SK+KSTY D+LP ++N +T RVHT Y+ Sbjct: 692 TKTGAWSTTAQVLDELAEQGHDLPKKILEWRQVSKLKSTYTDALPEYVNPQTHRVHTTYA 751 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 LA+T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P KL+SADYSQIELR+LA IA I Sbjct: 752 LAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADI 811 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L Q F + LDIH M A+E+FGV I+ + ++RR AK INF IIYGIS F LA QL I Sbjct: 812 PVLKQAFRDGLDIHAMTASEMFGVPIKGMPSEIRRRAKAINFGIIYGISAFGLANQLGIA 871 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R EA+ YIK+YF RFPGI Y+++T++F RQ+GYV T+FGR+ HY +I + +S+R NE Sbjct: 872 REEASAYIKKYFERFPGIRAYMDETRDFCRQHGYVTTLFGRKCHYPDIKASNASVRAFNE 931 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 RAAINA +QG+AADI RRAM V +L + KL+ +MLLQ+HDEL+FEVP+ E+ ++ Sbjct: 932 RAAINARLQGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDAEVEATLPVV 991 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 H M+ A P + L VPL V+ + + NW E Sbjct: 992 QHVMQDAPFPAVLLSVPLHVDARAAKNWDE 1021 >gi|154246319|ref|YP_001417277.1| DNA polymerase I [Xanthobacter autotrophicus Py2] gi|154160404|gb|ABS67620.1| DNA polymerase I [Xanthobacter autotrophicus Py2] Length = 1000 Score = 866 bits (2237), Expect = 0.0, Method: Compositional matrix adjust. Identities = 435/999 (43%), Positives = 624/999 (62%), Gaps = 33/999 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKES 56 +Q +H+FLVDGSSF++RA++ + RK+ D LP A+ FC L + +++ Sbjct: 8 LQPGDHVFLVDGSSFVFRAYFQSINQDRKYNFRSDRLPTGAVRLFCTKLLQFVRDGAVGI 67 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116 +H A+IFD +FR E+YPDYKANR + PE L+PQ PL+R A +AFG+ +E +E Sbjct: 68 KPTHLAIIFDKSEDSFRKELYPDYKANRSEPPEELIPQFPLMREAVRAFGLIPVEQARYE 127 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIE 166 ADD+IATY A K G V I+S DKDLMQ+V P +YD E +I + Sbjct: 128 ADDLIATYADQAVKAGADVLIVSADKDLMQMVGPKVAMYDPASGESGGRGARPERRIGVG 187 Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226 V++ +G+PPEK+ +QAL GDS DN+PG+PGIG KTAA L+ EYG+LE +L A IKQ Sbjct: 188 EVLEYFGVPPEKVTDVQALAGDSTDNVPGVPGIGIKTAAQLIGEYGDLETLLARAGEIKQ 247 Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 KRRE++L AE AR+S+ LV L DV + +PLE L+LE + RLI+FLKA+EFT + Sbjct: 248 PKRRESLLTNAEAARISKTLVTLVRDVSVEVPLEDLVLEAPDAKRLIAFLKAMEFTTITR 307 Query: 287 RVATTYDCDAANIE--PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344 RVA Y +AA +E P + E D + ++S ++ Sbjct: 308 RVAEAYGVEAAEVEADPRLAPAGLFSPAAPTSAEETDGAEPATGGEAPAVSAVAQAMDGT 367 Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404 TP L R P++ +Y +++ +++ W K + G +F T+++D + Sbjct: 368 LTPSDLAHARASTARTIPVDRTAYRTVLDLAELKAWCAKAQDQGLLAFDTETNSLDPMQA 427 Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD---STGK---NTLTKEILSYLKKFFE 458 + ++++ E +I L+ + D S G+ ++ ++ LK E Sbjct: 428 DLVGVSLALSPN--------EACYIPLAHTGAGDGLFSEGQLPGQIPVRDAIAALKGVLE 479 Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--- 515 ++ LK+GHN+KYD+LVL R+GI + F+ M MSY LD+G++ H + ++ L + Sbjct: 480 DKGTLKVGHNVKYDQLVLARHGIDVAPFDCTMCMSYALDAGKNGHGMDELSVLHLGHQPI 539 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 E+ K + DK++ +A E+++V L+LW +L+P+L E VYE L++P Sbjct: 540 AFSEVTGKGKGKVTFDKVALEPATHYAAEDADVTLRLWQVLKPRLAAEGRTTVYETLERP 599 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 +I V+++ME GI ID+ +L ++S+E ++ +E+ I +L+GE+ N+ SPKQ+GDILF Sbjct: 600 LIAVLARMESRGISIDKAMLARLSSEFAQGAARIEDEIAELAGERLNVGSPKQMGDILFG 659 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 K+ P G KT TG W T A LE++ + + + ILEWRQLSK++STY D+LPN +N + Sbjct: 660 KMGLPGGTKTATGMWSTKATALEELAEAGHKLPQKILEWRQLSKLRSTYTDALPNFVNPQ 719 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T+RVHT Y+LA+T TGRL+S +PNLQNIPI+T+ G++IRRAF++ L+SADYSQIEL Sbjct: 720 TRRVHTSYALAATTTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAEEGNLLVSADYSQIEL 779 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 R+LA IA+I L F LDIH M A+E+F V ++ + ++RR AK INF IIYGIS F Sbjct: 780 RLLAEIAEIPALRTAFTEGLDIHAMTASEMFNVPVKDMPAEVRRRAKAINFGIIYGISAF 839 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA QL IPR EA YIKRYF RFPGI +Y+E+TK F R++GYVET+FGRR HY EI + Sbjct: 840 GLANQLGIPREEAGQYIKRYFERFPGIRDYMEETKTFCREHGYVETLFGRRCHYPEIAAK 899 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 SIR NERAAINA +QG+AADI RRAMI + +LE KL+ +MLLQ+HDELVFEVPE Sbjct: 900 NPSIRAFNERAAINARLQGTAADIIRRAMIRMEPALEKAKLSARMLLQVHDELVFEVPEG 959 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E ++ ME A P + L VPLKV+ + + NW+E Sbjct: 960 EADATIPVVRQCMETASAPAVALAVPLKVDARAAKNWEE 998 >gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] Length = 1025 Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/1002 (43%), Positives = 647/1002 (64%), Gaps = 38/1002 (3%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++ E+ +H A Sbjct: 30 KGDHIFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPPENRPTHLA 89 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 +IFD VTFRN +YP+YKA+RP PE L+PQ L+R A +AF +P +E GFEADD+IA Sbjct: 90 IIFDKSEVTFRNHLYPEYKAHRPPAPEDLIPQFALIREAVRAFDLPCLEQSGFEADDLIA 149 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 TY A + G TI+S+DKDLMQLV+ +YDT+K+ +I + VI+K+G+PP K+V + Sbjct: 150 TYVREACEAGATATIVSSDKDLMQLVTDCVVMYDTMKDRRIGVPEVIEKFGVPPNKVVEV 209 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L A IKQ KRRE ++E AE AR+ Sbjct: 210 QALAGDSVDNVPGVPGIGIKTAAQLINEYGDLETLLARAPEIKQPKRREALIENAEKARI 269 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-- 300 SRKLV+L V + +PLE L + + + +L++FLKA+EFT L RVA D +++E Sbjct: 270 SRKLVLLDDHVQLEVPLEELAVHEPDARKLVAFLKAMEFTTLTRRVADYAQIDPSDVEAE 329 Query: 301 -------PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-------- 345 P + A + + + + S Q +N+ + Sbjct: 330 TALKSAVPPLAKSAPPSGDLFAGQEPSPQPSPAGGGGSAPASGQGGPLNAGRGRDGRPGV 389 Query: 346 --TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403 +P+ L R + + P++ +Y + + ++Q ++ ++ G + + ++D Sbjct: 390 VLSPETLVAARAEAARKIPVDRTAYKTLHSLDELQGFIARIHDTGIVALEAAATSIDPMQ 449 Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKK 455 ++ I +A++ L D +I L S D G ++ L LK Sbjct: 450 AELIGLALA-LGPND-------ACYIPLPHKQSGDGDGLFAAGLAPDQIGPRDALDALKP 501 Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515 E+ K+G IK+ ++L ++G+++R +D LMSY LD+GR SH + ++++ L + Sbjct: 502 ILESAGVAKVGFAIKFAAVLLAQHGLTLRNIDDPQLMSYALDAGRGSHALDALSESNLGH 561 Query: 516 TRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572 T E+ + K+ I D++ + +A E ++V L+L +L+P+L+ + VYE L Sbjct: 562 TLHTLTELTGTGKNKIGFDQVPVDRATAYAAERADVSLRLARVLKPRLVAGSMTAVYETL 621 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 ++P++ V+++ME GI ID+ +L ++SA+ ++ +E I +L+GE N+ SPKQLGDI Sbjct: 622 ERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELAGEDINIGSPKQLGDI 681 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 LF K+ P G+KTKTG W T+AQ L+++ + + IL+WRQ+SK++STY D+LPN++ Sbjct: 682 LFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTDALPNYV 741 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752 + +T RVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAF++ P KL+SADYSQ Sbjct: 742 HPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGNKLVSADYSQ 801 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELR+L+ +A + L + F++ +DIH M A+E+FGV +E + ++RR AK INF IIYGI Sbjct: 802 IELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGI 861 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S F LA QL IPR EA YIKRYF RFPGI Y+++T++F R +GYV T+FGR+ HY +I Sbjct: 862 SAFGLANQLSIPREEAGAYIKRYFERFPGIRAYMDETRDFCRTHGYVTTLFGRKCHYPDI 921 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 + SIR NERAAINA +QGSAADI RRAM+ + +L + KL+ +MLLQ+HDEL+FEV Sbjct: 922 KASNPSIRAFNERAAINARLQGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEV 981 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 PE E+ ++ M+ A P + L VPL+V+ + ++NW E Sbjct: 982 PEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADNWDE 1023 >gi|148258542|ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] gi|146410715|gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] Length = 1020 Score = 863 bits (2229), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/987 (44%), Positives = 643/987 (65%), Gaps = 23/987 (2%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++ + +H A Sbjct: 40 KSDHVFLVDGSSYIFRAYHALPPLNRKSDGLNVNAVLGFCNMLWKLLRDMPETDRPTHLA 99 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 ++FD VTFRN+IY DYKA+RP P+ L+PQ L+R A AF +P +E G+EADD+IA Sbjct: 100 IVFDKSEVTFRNKIYADYKAHRPPAPDDLIPQFALIREAVHAFDLPCLEQAGYEADDLIA 159 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 TY +A + G TI+S+DKDLMQLV+ +YDT+K+ +I VI+K+G+PPEK+V + Sbjct: 160 TYARLACERGATTTIVSSDKDLMQLVNDCVTMYDTMKDRRIGTAEVIEKFGVPPEKVVEV 219 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS DN+PG+PGIG KTAA L+ +YG+LE +L A+ IKQ KRRE ++E AE AR+ Sbjct: 220 QALAGDSTDNVPGVPGIGIKTAAQLINDYGDLEGLLTRAAEIKQPKRREALIENAEKARI 279 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI--- 299 SR+LV+L V + +PL+ L + + + +LI+FLKA+EFT L RVA D A++ Sbjct: 280 SRQLVLLDDHVALEVPLDDLAVHEPDPRKLIAFLKAMEFTTLTRRVAEYSQIDPADVAAN 339 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK-INSEQTPQKLFLERLQKL 358 + + T A + + + +T K S+ TP L R + Sbjct: 340 QQLKSGGGTAVPAPAAASAGTNAAGKPAAAAPKTGDPRTDKSAMSKGTPVSLAEARAEAA 399 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 I+ + Y I + ++ W+ ++ +G + + +++D + IA++ Sbjct: 400 KSARIDREKYQTIRSLPELNAWIARIHDLGRVTIEAKANSIDPMQASLCGIALALAPN-- 457 Query: 419 DTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFENEHFLKIGHNIK 470 + +I L+ + D G ++ L+ LK E+ LKIG NIK Sbjct: 458 ------DACYIPLAHRQAGDGGGLFDAGLAPDQVKDRDALAALKPVLESAGILKIGFNIK 511 Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSS 527 + ++L ++GI++ +DI LMSY LD+GR S S+A+ L++ E++ S K+ Sbjct: 512 FVAVLLAQHGITLANVDDIQLMSYALDAGRGSQKFESLAEHVLAHAVLGEGELVGSGKNK 571 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 + ++++ + HA E ++VI +LW +L+P+L+ E++ VYE L++P++ V++QME G Sbjct: 572 LTFEQVAIDRATAHAAEAADVIHRLWRVLKPRLVAERMTAVYETLERPLVTVLAQMERRG 631 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I ID+ +L ++S + ++ +E + +L+GE N+ SPKQ+GDILF K+ P G KTKT Sbjct: 632 IAIDRQVLSRLSGDFAQTAGRVEAELQELAGEPINVGSPKQIGDILFGKMGLPGGTKTKT 691 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G W T+A L+ + N + ILEWRQ+SK+KSTY D+LP ++N ++QRVHT Y+LA+ Sbjct: 692 GAWSTSASILDDLAEQGNDFARKILEWRQVSKLKSTYTDALPTYVNPQSQRVHTTYALAA 751 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P KL+SADYSQIELR+LA IA I L Sbjct: 752 TTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVL 811 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 Q F++ LDIH M A+E+FGV I+ + ++RR AK INF IIYGIS F LA QL I R E Sbjct: 812 KQAFKDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAFGLANQLGIAREE 871 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A+ YIKRYF RFPGI Y+++T+ F R++GYV T+FGR+ HY EI + +S+R NERAA Sbjct: 872 ASAYIKRYFERFPGIRAYMDETREFCRKHGYVTTLFGRKCHYPEIKASNASVRAFNERAA 931 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INA +QG+AADI RRAM V +L + KL+ +MLLQ+HDEL+FEVP++E+ ++ H Sbjct: 932 INARLQGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDDEVAATLPVVQHV 991 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ A P + L VPL V+ + ++NW E Sbjct: 992 MQDAPFPAVLLSVPLHVDARAADNWDE 1018 >gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278] gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278] Length = 1034 Score = 862 bits (2227), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/986 (43%), Positives = 645/986 (65%), Gaps = 24/986 (2%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++ + +H A++ Sbjct: 55 DHVFLVDGSSYIFRAYHALPPLNRKSDGLNVNAVLGFCNMLWKLLRDMPETDRPTHLAIV 114 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD VTFRN+IY DYKA+RP P+ L+PQ L+R A +AF +P +E GFEADD+IATY Sbjct: 115 FDKSEVTFRNQIYADYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQSGFEADDLIATY 174 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 +A + G TI+S+DKDLMQLV+ +YDT+K+ +I VI+K+G+PPEK+V +QA Sbjct: 175 ARLACERGATTTIVSSDKDLMQLVNDCVTMYDTMKDRRIGTAEVIEKFGVPPEKVVEVQA 234 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS DN+PG+PGIG KTAA L+ +YG+LE++L A+ IKQ KRRE ++E AE AR+SR Sbjct: 235 LAGDSTDNVPGVPGIGIKTAAQLINDYGDLESLLTRAAEIKQPKRREALIENAEKARISR 294 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP-VV 303 +LV+L V + +PL+ L + + + +LI+FLKA+EF+ L RVA D A++ Sbjct: 295 QLVLLDDKVALEVPLDDLAVHEPDPRKLIAFLKAMEFSTLTRRVAEYSQIDPADVTADAQ 354 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN----SEQTPQKLFLERLQKLS 359 L + ++ + + + ++ +I+ + TP L R + Sbjct: 355 LKVGSSPAAAPTPSSPASGGGSAPSKPATAPRTGDPRIDKSAMGKGTPAGLAESRAEAAK 414 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 I+ D Y + + +++ ++ + G + + ++D + ++++ Sbjct: 415 SARIDRDKYQTLRSLPELKAFLARAHEFGRVTVDVKASSIDPMQANLCGLSLALAPG--- 471 Query: 420 TSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKKFFENEHFLKIGHNIKY 471 E +I L+ + D G E L+ LK E+ LKIG+NIK+ Sbjct: 472 -----EACYIPLAHRQAGDGGGLFDAGLAPDQIKESEALAALKPVLESTGLLKIGYNIKF 526 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528 ++L ++GI+++ +DI+LMSY LD+GR SH + S+A+ L++ + E++ S K+ + Sbjct: 527 LAVLLAQHGITLQNVDDILLMSYALDAGRGSHKLDSLAEHVLAHAIISEGELIGSGKNKL 586 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 ++++ + HA E ++VI ++W +L+P+L E++ VYE L++P++ V+++ME GI Sbjct: 587 TFEQVAIDRATAHAAEAADVIHRVWRVLKPRLTAERMTAVYETLERPLVSVLARMERRGI 646 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ID+ +L ++S + ++ +E + +L+GE N+ SPKQ+GDILF K+ G +TKTG Sbjct: 647 SIDRQVLSRLSGDFAQTAARVEAELQELAGEPINVGSPKQIGDILFGKMGLSGGTRTKTG 706 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 W T+A L+ + N + ILEWRQ+SK+KSTY D+LP ++N +T RVHT Y+LA+T Sbjct: 707 AWSTSASILDDLAEQGNDFARKILEWRQVSKLKSTYTDALPTYVNPQTHRVHTTYALAAT 766 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P KL+SADYSQIELR+LA IA I L Sbjct: 767 TTGRLSSNEPNLQNIPVRTEDGRKIRRAFIATPGYKLVSADYSQIELRLLAEIADIPVLK 826 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F++ LDIH M A+E+FGV I+ + ++RR AK INF IIYGIS F LA QL I R EA Sbjct: 827 QAFKDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAFGLANQLGIAREEA 886 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 + YIKRYF RFPGI Y+++T+ F R+NGYV T+FGR+ HY EI + +S+R NERAAI Sbjct: 887 SAYIKRYFERFPGIRAYMDETREFCRKNGYVVTLFGRKCHYPEIKASNASVRAFNERAAI 946 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NA +QG+AADI RRAM V ++L KL+ +MLLQ+HDEL+FEVPE+E+ ++ H M Sbjct: 947 NARLQGTAADIIRRAMTRVEEALAQKKLSAQMLLQVHDELIFEVPEDEVAATLPVVQHVM 1006 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 + A P + L VPL V+ + ++NW E Sbjct: 1007 QDAPFPAVLLSVPLHVDARAADNWDE 1032 >gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] Length = 1012 Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1011 (42%), Positives = 648/1011 (64%), Gaps = 59/1011 (5%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL+ ++ +H A Sbjct: 20 KGDHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLREMPPDNRPTHLA 79 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 +IFD TFRNE+YP YKA RP PE L+PQ L+R A +AF +P +E GFEADD+IA Sbjct: 80 IIFDKSEKTFRNEMYPAYKAQRPPAPEDLIPQFALIREAVRAFDLPCLEQIGFEADDLIA 139 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 TY A + G TI+S+DKDLMQLV+ +YDT+K+ +I I VI+K+G+PP K+V + Sbjct: 140 TYVREACERGATATIVSSDKDLMQLVTDCVTMYDTMKDRRIGIAEVIEKFGVPPNKVVEV 199 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L A+ IKQ KRRE ++E A+ AR+ Sbjct: 200 QALAGDSVDNVPGVPGIGVKTAAQLINEYGDLDTLLSRAAEIKQPKRREALIENADKARI 259 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA------------- 289 SR+LV+L V + +PL+ L + + + +LI+FLKA+EF+ L RVA Sbjct: 260 SRRLVLLDDHVKLDVPLDELAVHEPDARKLIAFLKAMEFSTLTRRVAEYSQIDPADVAAD 319 Query: 290 -------------TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336 T A ++P + + D + + D Sbjct: 320 AATKSAAAIAPAPTGDQFVMAGLDPAIHPASQ------------DASSKATNPRVKPAGD 367 Query: 337 --QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394 + + ++ TP L R ++ ++ D Y + + ++ +W+ ++ G +F+ Sbjct: 368 GGKRGEAANDFTPISLAAARAEQARNTKVDRDGYQTVRSLDELNRWIARIHDAGQVAFEA 427 Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLT 446 ++D ++ +A++ E +I L S D G T Sbjct: 428 KATSIDPMQAELCGLALALTPN--------EACYIPLGHKQSGDGDGLFAAGLAPDQIGT 479 Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506 ++ L L+ E+ LKIG NIK+ ++L ++G++++ +D+ LMSY LD+GR +H + Sbjct: 480 RDALEALRPLLESPGVLKIGFNIKFTAVLLAQHGLTLQNHDDVQLMSYALDAGRHAHGLD 539 Query: 507 SIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 ++A+ WL + + E++ S K+ + D+++ + +A E+++V L+LW +L+P+L E Sbjct: 540 ALAENWLGHKALSYGEVIGSGKAKLGFDQVAIDRATCYAAEDADVALRLWRILKPRLTAE 599 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 +++ VYE L++P+I V+++ME GI ID+ +L ++S++ ++ +E I +++GE+ N+ Sbjct: 600 RMMTVYETLERPLIGVLARMERRGISIDRQVLARLSSDFAQTAARIEAEIREIAGEELNI 659 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 SPKQLGD+LF K+ P G KTKTG W T+A L+++ + + IL+WRQ+SK++ST Sbjct: 660 GSPKQLGDVLFGKMGLPGGKKTKTGAWSTSASILDELAEEGHQFPRKILDWRQVSKLRST 719 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y D+LP +++ +T RVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAFI+ P Sbjct: 720 YTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFIAAPGH 779 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 KL+SADYSQIELR+L+ +A++ L F++ +DIH M A+E+FGV ++ + ++RR AK Sbjct: 780 KLVSADYSQIELRLLSEVAEVPALRTAFQDGIDIHAMTASEMFGVPVKDMPGEVRRRAKA 839 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 INF IIYGIS F LA QL IPR EA YIK+YF RFPGI +Y++ TK F R +GYVET+F Sbjct: 840 INFGIIYGISAFGLANQLGIPREEAGAYIKKYFERFPGIRDYMDATKEFCRAHGYVETLF 899 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 GR+ HY +I + SIR NERAAINA +QG+AADI RRAM+ + +L +L+ +MLLQ Sbjct: 900 GRKCHYPDIKASNPSIRAFNERAAINARLQGTAADIIRRAMVRMEDALAAKQLSAQMLLQ 959 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDEL+FEVP++E+ ++ M+ A P + L VPL+V+ + ++NW E Sbjct: 960 VHDELIFEVPDDEVAATLPVVQQVMQDAPFPAVLLSVPLQVDARAADNWDE 1010 >gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] Length = 1025 Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1002 (43%), Positives = 647/1002 (64%), Gaps = 38/1002 (3%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++ E+ +H A Sbjct: 30 KGDHIFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPPENRPTHLA 89 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 +IFD VTFRN +YP+YKA+RP PE L+PQ L+R A +AF +P +E GFEADD+IA Sbjct: 90 IIFDKSEVTFRNHLYPEYKAHRPPAPEDLIPQFALIREAVRAFDLPCLEQSGFEADDLIA 149 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 TY A + G TI+S+DKDLMQLV+ +YDT+K+ +I + VI+K+G+PP K+V + Sbjct: 150 TYVREACEAGATATIVSSDKDLMQLVTDCVVMYDTMKDRRIGVPEVIEKFGVPPNKVVEV 209 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L A IKQ KRRE ++E AE AR+ Sbjct: 210 QALAGDSVDNVPGVPGIGIKTAAQLINEYGDLETLLARAPEIKQPKRREALIENAEKARI 269 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-- 300 SRKLV+L V + +PLE L + + + +L++FLKA+EFT L RVA D +++E Sbjct: 270 SRKLVLLDDHVQLEVPLEELAVHEPDARKLVAFLKAMEFTTLTRRVADYAQIDPSDVEAE 329 Query: 301 -------PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-------- 345 P + A + + + + S Q +N+ + Sbjct: 330 TALKSAVPPLAKSAAASGDLFAGQEPSPQPSPASGGGSALASGQGGPLNAGRGRDGRPGV 389 Query: 346 --TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403 +P+ L R + + P++ +Y + + ++ ++ ++ G + + + ++D Sbjct: 390 VLSPEALVAARAEAARKIPVDRTAYKTLRSLDELHGFIARIHDTGIVALETVATSIDPMQ 449 Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYLKK 455 ++ I +A++ L D +I L S D G ++ L LK Sbjct: 450 AELIGLALA-LGPND-------ACYIPLLHKQSGDGDGLFAAGLAPDQIGPRDALDALKP 501 Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515 E+ K+G IK+ ++L ++G+++R +D LMSY LD+GR SH + ++++ L + Sbjct: 502 ILESAGVAKVGFAIKFAAVLLAQHGLTLRNIDDPQLMSYALDAGRGSHALDALSESNLGH 561 Query: 516 TRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572 T E+ + K+ I D++ + +A E ++V L+L +L+P+L+ + VYE L Sbjct: 562 TLHTLTELTGTGKNKIGFDQVPVDRATAYAAERADVSLRLARVLKPRLVAGSMTAVYETL 621 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 ++P++ V+++ME GI ID+ +L ++SA+ ++ +E I +L+GE N+ SPKQLGDI Sbjct: 622 ERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELAGEDINIGSPKQLGDI 681 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 LF K+ P G+KTKTG W T+AQ L+++ + + IL+WRQ+SK++STY D+LPN++ Sbjct: 682 LFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPRKILDWRQVSKLRSTYTDALPNYV 741 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752 + +T RVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAF++ P KL+SADYSQ Sbjct: 742 HPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGNKLVSADYSQ 801 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELR+L+ +A + L + F++ +DIH M A+E+FGV +E + ++RR AK INF IIYGI Sbjct: 802 IELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGI 861 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S F LA QL IPR EA YIKRYF RFPGI Y+++T++F R +GYV T+FGR+ HY +I Sbjct: 862 SAFGLANQLSIPREEAGAYIKRYFERFPGIRAYMDETRDFCRNHGYVTTLFGRKCHYPDI 921 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 + SIR NERAAINA +QGSAADI RRAM+ + +L + KL+ +MLLQ+HDEL+FEV Sbjct: 922 KASNPSIRAFNERAAINARLQGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEV 981 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 PE E+ ++ M+ A P + L VPL+V+ + ++NW E Sbjct: 982 PEAEVEATLPVVRAVMQDAPFPAVILNVPLQVDARAADNWDE 1023 >gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] Length = 1027 Score = 858 bits (2218), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/1004 (43%), Positives = 647/1004 (64%), Gaps = 40/1004 (3%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +H+FLVDGSS+I+RA++A P L+RK DGL VNA+ GFCNMLWKLL++ E+ +H A Sbjct: 30 KGDHVFLVDGSSYIFRAYHALPPLNRKSDGLQVNAVLGFCNMLWKLLRDMPPENRPTHLA 89 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 +IFD VTFRN +YP+YKA+RP PE L+PQ L+R A +AF +P +E GFEADD+IA Sbjct: 90 IIFDKSEVTFRNALYPEYKAHRPPAPEDLIPQFGLIREAVRAFDLPCLEQSGFEADDLIA 149 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 TY A + G TI+S+DKDLMQLV+ +YDT+K+ +I + VI+K+G+PP K+V + Sbjct: 150 TYVREACEAGATATIVSSDKDLMQLVTDCVVMYDTMKDRRIGVPEVIEKFGVPPNKVVEV 209 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG+PGIG KTAA L+ EYG+LE +L A IKQ KRRE ++E AE AR+ Sbjct: 210 QALAGDSVDNVPGVPGIGIKTAAQLINEYGDLETLLARAPEIKQPKRREALIENAEKARI 269 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-- 300 SRKLV+L V + +PL L + + + +L++FLKA+EFT L RVA D +++E Sbjct: 270 SRKLVLLDDHVKLEVPLAELAVHEPDARKLVAFLKAMEFTTLTRRVAEYAQIDPSDVEAE 329 Query: 301 -------PVVLDINTTENKG--IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ------ 345 P + +T G A + + + + S +N+ + Sbjct: 330 TALKSAVPPLARSGSTSASGDLFAGQEPSPQPSPASGRGGAPDSGPGGPLNAGRGRDGKP 389 Query: 346 ----TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401 +P+ L R + + P++ +Y + ++ + ++ G + + + ++D Sbjct: 390 GVVLSPEALVAARAEAARKVPVDRTAYKTLRTLDELHAVIARIHDSGVVALEAVATSIDP 449 Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG--------KNTLTKEILSYL 453 ++ +A++ L D +I L + D G T++ L L Sbjct: 450 MQAELTGVALA-LGPND-------ACYIPLGHKQAGDGDGLFAAGLAPDQLGTRDALDAL 501 Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513 K E+ K+G IK+ ++L ++G+++R +D LMSY LD+GR SH + ++++ L Sbjct: 502 KPVLESAGIAKVGFAIKFAAVLLAQHGLTLRNIDDPQLMSYALDAGRGSHGLDALSESNL 561 Query: 514 SYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570 +T E+ + K+ I +D++ + +A E ++V L+L +L+P+L+ + VYE Sbjct: 562 GHTLHTLTELTGTGKNKIGLDQVGIDRATAYAAERADVSLRLARVLKPRLVAGSMTAVYE 621 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P++ V+++ME GI ID+ +L ++S++ ++ +E I +L+GE N+ SPKQLG Sbjct: 622 TLERPLVGVLARMERRGISIDRQVLSRLSSDFAQTAARIEAEIRELAGEDINIGSPKQLG 681 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 DILF K+ P G+KTKTG W T+AQ L+++ + K ILEWRQ+SK++STY D+LPN Sbjct: 682 DILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQGHEFPKKILEWRQVSKLRSTYTDALPN 741 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750 +++ +T RVHT Y+LA+T TGRL+S EPNLQNIP++T+ G+KIRRAF++ P KL+SADY Sbjct: 742 YVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRAFVATPGHKLVSADY 801 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELR+L+ +A + L + F++ +DIH M A+E+FGV +E + ++RR AK INF IIY Sbjct: 802 SQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIY 861 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 GIS F LA QL IPR EA YIKRYF RFPGI Y+++T++F R +GYV T+FGR+ HY Sbjct: 862 GISAFGLANQLGIPREEAGAYIKRYFERFPGIRAYMDETRDFCRAHGYVTTLFGRKCHYP 921 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 +I + SIR NERAAINA +QGSAADI RRAM+ + +L + KL+ +MLLQ+HDEL+F Sbjct: 922 DIKASNPSIRAFNERAAINARLQGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIF 981 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EVPE E+ ++ M+ A P + L VPL+V+ + ++NW E Sbjct: 982 EVPEAEVEATLPVVRSVMQDAPFPAVILNVPLQVDARAADNWDE 1025 >gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] Length = 1009 Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/992 (42%), Positives = 623/992 (62%), Gaps = 52/992 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + ++L+DGS +I+RAF+A P L+R DGLPV A+ GFCNMLWKLL+ ++ + +H AVI Sbjct: 50 SRVYLIDGSGYIFRAFHALPPLTRPSDGLPVGAVHGFCNMLWKLLRETKGANAPTHLAVI 109 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD+ VTFR+ I YKA RP+ P L+PQ L+R A +AF + IE +GFEADDIIA Y Sbjct: 110 FDHSRVTFRSAISATYKAQRPEPPAELVPQFALIRDAVRAFNVACIEQEGFEADDIIAAY 169 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 T A G V I+S+DKDLMQLV P + DT+K + I VI+K+G+PP K+V +Q+ Sbjct: 170 TCQAADAGADVVIVSSDKDLMQLVRPGVTMLDTMKNKVIGEAEVIEKFGVPPSKVVDVQS 229 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS+DN+PG+PGIG KTAA L++EYG+LEN+L NA+ IKQK RRE ++E+A+ ARLSR Sbjct: 230 LAGDSVDNVPGVPGIGIKTAAELIREYGDLENLLANAALIKQKMRRERLIEFADQARLSR 289 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 +LV L D+P+ PL+ +E+ + L+ FL+ +EF L R++ + +EP Sbjct: 290 RLVELSCDMPVEKPLDLTAVEEPDPHALLEFLRTMEFNSLTKRISEAF-----GVEP--- 341 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 +T E + ++ + K+S + +D+ ++ + L P + Sbjct: 342 --STGEMTRPSPVDGVEAEAPEKSSGGDTPADEVRRVEA-------------WLKAIPFD 386 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 Y ++ + + ++ W+ G +F T +DA +K +A++ + Sbjct: 387 RSLYVQVTDLQALEDWIAAATEQGFVAFDTETTALDAMSAKLCGVALALEPGR------- 439 Query: 425 ETIFIDLSVHTSQDS---TGKNTLTK----EILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 +I L+ H + D TG + + L LK E++ LKIG NIKYD L++ Sbjct: 440 -ACYIPLA-HRAGDGLDFTGAGEIAQLPMESALPRLKALLEDDSVLKIGQNIKYDALIMR 497 Query: 478 RYG-ISMRGFEDIMLMSYVLDSGR---SSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 R+G I + ++D MLM+Y D GR + + ++++ L +T ++ K+ Sbjct: 498 RHGDIRVAPYDDTMLMAYACDQGRGGLAGFGMDELSKRHLGHTPIAFTDVAGKGKAQSTF 557 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 D I+ + E+A E+++V L+LW L R ++ E + VY L++PM V+ QME GI++ Sbjct: 558 DCIAVDKATEYAAEDADVTLRLWHLFRARIAAEGMAAVYATLERPMPAVLGQMEFNGIEV 617 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D+ +L ++S + +++L LE+ IY+L+G++FN+ SP+Q+ D+LF K P KT TG+W Sbjct: 618 DRTVLSRLSGDFAQSLARLEDEIYELAGQRFNIGSPQQIADLLFGKFGLPGAKKTSTGKW 677 Query: 651 KTTAQDLEQINCGDN------PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 T A+ LE + ++ + +LEWRQL+K+KSTY DSLP HI+ T R+HT YS Sbjct: 678 STGAKVLEDLVSSEDLTEDQRRLPAKLLEWRQLAKLKSTYTDSLPQHIDADTGRIHTCYS 737 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 LAST TGRL+S EPNLQNIPI+T G+ IR AFI+ P KKLISADYSQIELR+LAH+A I Sbjct: 738 LASTSTGRLSSTEPNLQNIPIRTREGRMIRSAFIAAPGKKLISADYSQIELRVLAHMADI 797 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L F LDIH M A+E+FGV ++ + ++RR AK INF IIYGIS F L+ QL IP Sbjct: 798 PALKHAFAEGLDIHAMTASEMFGVPVKDMPGEVRRRAKAINFGIIYGISAFGLSQQLGIP 857 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R EA DYI +YF RFPGI Y++ ++ V ++G+VET+FGR+IH+ EI +PK ++R E Sbjct: 858 RQEAGDYIAKYFERFPGIRAYMDAMRSKVHEDGHVETLFGRKIHFPEIKTPKWNMRQFFE 917 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 RAAINAPIQG+AADI RRAM+ V +LE + +MLLQ+HDELVFE + E+ + + Sbjct: 918 RAAINAPIQGTAADIIRRAMVRVPAALEQAGVRARMLLQVHDELVFEADDSEVEATIKAV 977 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 ME+A P + VPLKV+ + + NW E + Sbjct: 978 TRVMERAAEPAVAFSVPLKVDARAAQNWDEAH 1009 >gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] Length = 995 Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1004 (44%), Positives = 629/1004 (62%), Gaps = 68/1004 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +H++L+DGS +I+RAF+A P L+R DGLPV A+ GFC MLWKLL+ ++ +H Sbjct: 26 KGSHVYLIDGSGYIFRAFHALPPLTRPSDGLPVGAVHGFCQMLWKLLRETKASEAPTHMG 85 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD TFRN+IYP YKA RP PE L+PQ PL+R A +AF + +E+ G+EADD+IA Sbjct: 86 VIFDAGRETFRNQIYPQYKAQRPPPPEELIPQFPLIRDAVRAFNVACVELDGYEADDLIA 145 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 TY+ A G VT++S+DKDLMQLV P ++D +K ++I + VI+K+G+PPEK+V + Sbjct: 146 TYSRRAVDVGGDVTVVSSDKDLMQLVRPGVTMFDGMKSKRIGRDEVIEKFGVPPEKVVDV 205 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 Q+L GDS+DN+PG+PGIG KTAA L+ YG+L+ +L A IKQ KRRE ++E+AE AR+ Sbjct: 206 QSLAGDSVDNVPGVPGIGIKTAAELIAAYGDLDTLLARAGEIKQPKRREKLIEFAEQARI 265 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 SR LV+L+ DV + ++ L + D L+ FL+ +EF L R+A +A P+ Sbjct: 266 SRSLVLLKDDVVLETAIDALGVRDPQVDALLGFLRMMEFNTLTKRIAEGLGAEAP--PPL 323 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTS-QFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 + + + ++ S Q +L + + +P Sbjct: 324 AVSVGAS----------------VRVSPQQVNLDVIEAGAPQDASPAAAVAAGAAIARAQ 367 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 I+ Y + +++WV++ G +F T + A ++ + I+++ Sbjct: 368 AIDRSKYETVTTRARLEEWVRRAREAGRVAFDTETTDLSALDAELVGISLAVAPG----- 422 Query: 422 FKVETIFIDLSVHTS--------QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 E +I L HT D+ + E L+ + E+ LKIG NIKYD Sbjct: 423 ---EACYIPLG-HTGPSGDLFGGDDNRPQQLAANEALALIGPLLEDPSVLKIGQNIKYDA 478 Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL-------KS 523 LV+ R GI + F+D ML+SY LD GR H + ++A++ L + T + + KS Sbjct: 479 LVMKRRGIEIVSFDDTMLLSYALDGGRGQHGMDALAERHLGHMCMTFAQAMGHAPGAKKS 538 Query: 524 RK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K +++P+DK + E+A E+++V ++LW+ L+P+L E++ VYE L++P++ V+ Sbjct: 539 DKTFAAMPLDKAT-----EYAAEDADVTMRLWMALKPRLAAERMATVYETLERPLVPVIV 593 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME GI++D+D+L ++S ++ + LEE I L G KFNL SPKQLG++LF +LK P Sbjct: 594 GMEHAGIKVDRDILSRLSHAFAQRTVRLEEEINGLVGHKFNLGSPKQLGELLFDRLKLPG 653 Query: 642 GAKTKTGQWKTTAQDL------EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 G KTK+GQW+T A L E+I+ +I +LEWRQ++K+KSTY D+LP +IN Sbjct: 654 GKKTKSGQWETRANLLDDLAANEEIDGDARRLINTMLEWRQMTKLKSTYTDALPAYINAE 713 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T R+HT Y+L +T TGRLAS +PNLQNIPI+T G++IR AFI+ +LISADYSQIEL Sbjct: 714 TGRIHTSYALGATTTGRLASSDPNLQNIPIRTKEGREIRTAFIADKGMQLISADYSQIEL 773 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 R+LAH+A I L + F LDIH M A+E+FGV ++ + ++RR AK INF IIYGIS F Sbjct: 774 RVLAHVADIPQLKKAFAEGLDIHAMTASEMFGVPVKDMPSEVRRRAKAINFGIIYGISAF 833 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA QL I R EA+DYIK YF RFPGI +Y++ TK V +G+VETIFGRRIHY EIN+ Sbjct: 834 GLANQLSISREEASDYIKTYFQRFPGIRDYMDATKKQVHAHGHVETIFGRRIHYPEINTK 893 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPE 934 S+R ERAAINAPIQGSAADI RRAMI + +L D KL++ +MLLQ+HDELVFEV + Sbjct: 894 NPSMRGFLERAAINAPIQGSAADIIRRAMIRMPAALVDAKLSSARMLLQVHDELVFEVAD 953 Query: 935 EE----ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E ITTA ++ ME A P + L VP+ V+ K +NNW E Sbjct: 954 NEASALITTARRV----METAAEPALKLAVPIHVDAKAANNWDE 993 >gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] Length = 1020 Score = 839 bits (2167), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/1004 (42%), Positives = 633/1004 (63%), Gaps = 37/1004 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKES 56 +Q +H+FLVDGSSF++RA++ + RK+ D LP A+ FC L++ +++ Sbjct: 26 IQPGDHVFLVDGSSFVFRAYFQSINQDRKYNYRSDRLPTGAVRLFCTKLFQFVRDGALGI 85 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116 +H A+IFD +FR E+YP YKANR P+ L+PQ PL+R A +AFG+ +E +E Sbjct: 86 RPTHLAIIFDKSEDSFRKELYPLYKANRSDPPDDLIPQFPLMREAVKAFGLIPVEQARYE 145 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIE 166 ADD+IATY A+ G V I+S DKDLMQL+ +YD E +I + Sbjct: 146 ADDLIATYARQAQAAGADVLIVSADKDLMQLIGERVAMYDPASGESGGRGSRPERRIGVP 205 Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226 V++ +G+ PE++V +QAL GDS DN+PG+PGIG KTAA L+++YG+L+ +L AS IKQ Sbjct: 206 EVVEYFGVGPEQVVDVQALAGDSTDNVPGVPGIGIKTAATLIKDYGDLDTLLARASEIKQ 265 Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 +KRR++++E+A+ AR+S++LV L TDVP+ +PL L+LE +G +L+SFLKA+EFT ++ Sbjct: 266 EKRRQSLIEHADKARISKELVKLVTDVPLEVPLADLVLEQPDGKQLVSFLKAMEFTTIVR 325 Query: 287 RVATTYDCDAANIEP-VVLDINTT----ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341 R A + +AA I+P L ++ + + + T + DT +++ ++ Sbjct: 326 RAAEAFGVEAAEIDPDPRLAVSGSGPLFAGQSAPVSTPPEADTDTAPPAPPAVALTGARP 385 Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401 N + P L R Q+ ++ Y + + +++ W K G +F T ++D Sbjct: 386 NVLE-PADLAATRAQEARATKVDRSHYRMLTSLDELKAWCAKARDQGFVAFDTETTSLDP 444 Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT------KEILSYLKK 455 + + ++++ E +I L+ + D L + L+ LK Sbjct: 445 MQADLVGVSLALAPN--------EACYIPLAHVGAGDGLFTEGLLPGQIPFNDALAALKG 496 Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515 E+ LKIGHN+KYD VL R+GI++ ++ M MSY LD+GR H + ++ K+L + Sbjct: 497 MLEDGGTLKIGHNVKYDAAVLARHGITVAPYDCTMCMSYALDAGRGGHGMDELSIKYLGH 556 Query: 516 TR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572 T E+ KS I D++ +A E+++V L+LW +L+P+L E + VYE L Sbjct: 557 TPIAFTEVAGKGKSQITFDRVPLEAATAYAAEDADVTLRLWRVLKPRLPSEGMTTVYETL 616 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 ++P+I V+++ME GI ID+ L ++S+E ++ LE+ I L+GEK N+ SPKQ+GD+ Sbjct: 617 ERPLIAVLARMEARGISIDRATLARLSSEFAQGAARLEDEISGLAGEKINVGSPKQIGDL 676 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 LF K++ P KT TG W T A L+++ + + + IL WRQLSK++STY D+LPN++ Sbjct: 677 LFGKMQLPGATKTPTGAWSTKANVLDELAEAGHELPQKILAWRQLSKLRSTYTDALPNYV 736 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752 N T RVHT Y+LA+T TGRL+S EPNLQNIPI+T+ G++IRRAF++ P KL+SADYSQ Sbjct: 737 NPTTHRVHTSYALAATTTGRLSSSEPNLQNIPIRTEEGRRIRRAFVAVPGTKLVSADYSQ 796 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELR+LA IA+I L Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGI Sbjct: 797 IELRLLAEIAEIPALRQAFRDGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGI 856 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S F LA QL IPR EA YIKRYF RFPGI Y+++T+ + R++GYVET+FGRR HY +I Sbjct: 857 SAFGLANQLGIPRDEAGQYIKRYFERFPGIRAYMDETRAYCREHGYVETLFGRRCHYPDI 916 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 + SIR NERAAINA +QG+AADI RRAMI + +L D L+ +MLLQ+HDELVFEV Sbjct: 917 AASNPSIRAFNERAAINARLQGTAADIIRRAMIRMEGALADAGLSARMLLQVHDELVFEV 976 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 P+ E+ ++ ME A P + L VPL+V + ++NW+E + Sbjct: 977 PDAEVEATLPVVRRVMETAARPAVELAVPLQVEARAADNWEEAH 1020 >gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 996 Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/993 (43%), Positives = 605/993 (60%), Gaps = 29/993 (2%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKESIA 58 + +H+FLVDGSSF++RA++ + K+ D LP A+ FC + + ++ Sbjct: 10 RGSHVFLVDGSSFVFRAYFQSIRQDAKYNYRSDRLPTGAVRLFCAKILQFVREGAAGVKP 69 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H A+IFD +FR EIYP+YKA+RP PE L+PQ PL+R A +AFG+ IE +EAD Sbjct: 70 THLAIIFDKSEKSFRKEIYPEYKAHRPDPPEDLVPQFPLMRAAVRAFGLTPIEQDLYEAD 129 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIE-HVIKKWGI 174 D+IATY A K+G V I+S DKDLMQLV P +YD +EE++ E V+ +G+ Sbjct: 130 DLIATYAEQARKKGADVLIVSADKDLMQLVGPGVTMYDPASGAREERLITEAEVVDYFGV 189 Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 PPEK+V +QAL GDS DN+PG GIG KTAA L+ EYG+L+ +L A IKQ KRRE + Sbjct: 190 PPEKVVDVQALAGDSTDNVPGAKGIGVKTAAQLINEYGDLDTLLEKAPGIKQPKRREALT 249 Query: 235 E--YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 E + RLS+KLV L D P+ L+ L LE+ + +L+SFL+A+EFT + RVA Y Sbjct: 250 EPEAVKLIRLSKKLVELVRDAPVETKLDELGLEEPDAKKLVSFLQAMEFTTITRRVAELY 309 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 DA +IEP + + E D + ++ + TP L Sbjct: 310 GVDAHDIEPDADFVGPAGWRARNGEVREDAPAAAPKGEKTAGKSKHGGKAEGMTPASLAA 369 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 R + I+ +Y + + +++WV + G + T ++D + + ++++ Sbjct: 370 VRRAEAQATKIDRSAYETVTSLASLEKWVAEATDAGVVAVDTETTSLDPMSCELVGVSLA 429 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDS---TGKNTLTKEI-----LSYLKKFFENEHFLK 464 + +I L D G L +I ++ LK E++ LK Sbjct: 430 ITPGR--------ACYIPLQHREPGDGDLFGGAALLQGQIPLDKAIATLKPLLEDDAVLK 481 Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL 521 I HN+KYD LVL RYG+ + ED ML+SY LD+GR++H + + K L + + Sbjct: 482 IAHNMKYDLLVLARYGVDVAPIEDTMLISYTLDTGRNNHGLDELTLKHLGHENIPFSAVA 541 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 S ++ I +++ + E+A E+++V L+LW L+P+L E + +VYE L++PM+ ++ Sbjct: 542 GSGRNFIGFARVALDRATEYATEDADVTLRLWRALKPRLAAEHMTNVYETLERPMVATLA 601 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME GI ID+ +L ++S E ++++ LE +I+DL+GE FNL SPKQLGDILF K+ P Sbjct: 602 GMERRGITIDRAMLSRLSGEFAQDMARLEADIFDLAGETFNLGSPKQLGDILFGKMGLPG 661 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT TG W T+A LE + N + IL+WRQLSK+KSTY D+LP +NK T RVHT Sbjct: 662 AKKTATGAWSTSASVLEDLANEGNDFARRILDWRQLSKLKSTYTDALPGFVNKETGRVHT 721 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 Y+LA+T TGRL+S +PNLQNIP++ + G+KIR+AF++ P LISADYSQIELR+LAHI Sbjct: 722 SYALAATTTGRLSSSDPNLQNIPVRNEAGRKIRKAFVASPGHVLISADYSQIELRLLAHI 781 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 A I L + F + +DIH M A+E+FGV ++ + P++RR AK INF IIYGIS F LA QL Sbjct: 782 ADIPQLKKAFADGIDIHAMTASEMFGVPVKDMPPEVRRRAKAINFGIIYGISAFGLANQL 841 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 IPR EA YIKRYF RFPGI +Y+E TK VR+ G V TIFGR H+ I S +S R Sbjct: 842 SIPREEAGAYIKRYFERFPGIRDYMEATKKLVREKGAVTTIFGRVCHFPRIGSANASDRA 901 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ERAAINAPIQG+AADI RRAM+ + +L L +MLLQ+HDELVFE P++E Sbjct: 902 FYERAAINAPIQGAAADIIRRAMVRMDDALASEGLKAQMLLQVHDELVFEAPKKEAEATI 961 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I ME+A P + L VPLKV+ + + NW E Sbjct: 962 EIARRVMEEAPAPAVQLAVPLKVDARAAANWDE 994 >gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19] gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19] Length = 959 Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/984 (42%), Positives = 610/984 (61%), Gaps = 55/984 (5%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K L L+DGS +I+RA++ P L+RK DGLPV A++GFCNML KL++ +R + SH A Sbjct: 17 KAKRLVLIDGSGYIFRAYHGLPPLTRKSDGLPVGAVSGFCNMLVKLIKENRGDDAPSHLA 76 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANRP PE L+PQ PLVR AT+AFG+PAIE+ GFEADD+I Sbjct: 77 VIFDAGSKTFRNDLYDGYKANRPPPPEDLIPQFPLVRDATRAFGLPAIELAGFEADDLIC 136 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 TY ++A ++GF VT+IS+DKDLMQLV+ + D VK + E VI+K+G+PPE +V Sbjct: 137 TYAHLAVQQGFEVTVISSDKDLMQLVNDKVTMMDPVKGTPVGREQVIEKFGVPPELVVDA 196 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAA LL EYG+L+++L A IKQ+KRR+ ++++ + + Sbjct: 197 QALIGDSVDNVPGAPGIGVKTAAQLLIEYGDLDSVLARAGEIKQEKRRQTLIDFKDQILM 256 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 SR+LV LR D P+ + +L+ L +FL A+EF L R+ + Sbjct: 257 SRELVRLRCDTPVPAEIATFVLKQPEADILAAFLAAMEFNSLARRIGGS----------- 305 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 +++E+ + ++I + + L+ + + + P Sbjct: 306 -----------LSLES----------------TTALAQIPTAPISRPLYGVKTELGEKQP 338 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + D+Y + + +Q WV++ E + TD + A H+K I++ST DT+ Sbjct: 339 FDLDAYECVQTIEQLQTWVRRCEQAQVIAVDTETDDLSATHAKLCGISLST-----DTNC 393 Query: 423 KVETIFIDLS---VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 L+ + K + ++ LK EN + LK+G NIKYD VL RY Sbjct: 394 ACYIPLGHLASDGLDFGGGDDLKQIPLDQAIALLKPVLENRNILKVGQNIKYDLSVLKRY 453 Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536 GI + ++D MLMSYV++ G H + ++Q L +T K++ S K+ ++ Sbjct: 454 GIDVAPYDDTMLMSYVVEGGLHGHGMDELSQLHLGHTPIPFKQVAGSGKTLKSFKFVALK 513 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 + ++A E+++V L+LW +L+P+L+ ++L VYE L++ M +S+ME+ GI++D +L+ Sbjct: 514 EATQYAAEDADVTLRLWHVLKPRLVRDRLNTVYETLERGMPKALSEMELNGIRVDPQVLR 573 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 +S + + ++E+ + G FNL+SP+QLG + F ++K P G +T +GQW T + Sbjct: 574 NLSQDFGTRMNAIEQEAHAHLGRPFNLNSPQQLGVVFFDEMKLPGGKRTASGQWATDVKV 633 Query: 657 LEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 LE I G N + K +L++RQ++K+K TY D+L + + +TQR+HT + LAST T Sbjct: 634 LEDIAEGKNGTGAGQTLAKLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSFHLASTTT 693 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRLAS EPNLQNIPI+T G+KIR AFI+ P KLISADYSQIELR+LAHI I L + Sbjct: 694 GRLASNEPNLQNIPIRTGEGRKIRTAFIAKPGCKLISADYSQIELRLLAHIGDIEQLKKA 753 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F + DIH M A+E+FGV + ++ ++RR AK INF IIYGIS F LA QL I + EA+ Sbjct: 754 FSDGQDIHAMTASEMFGVPMADMTSEIRRRAKAINFGIIYGISGFGLANQLGIDQGEASR 813 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YIK YF RFPGI +Y++ TK F+R NG+V+T+ GR+IH EIN +I+ ERAAINA Sbjct: 814 YIKTYFERFPGIKDYMDATKQFLRDNGFVQTLMGRKIHIPEINGKGGAIKAFAERAAINA 873 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQG+AADI RRAM+ + L+ T+MLLQ+HDEL+FE PE E+ +I M+ Sbjct: 874 PIQGTAADIIRRAMMRMQPRLDAAGFTTRMLLQVHDELIFEAPEAEVAAVIPLIQEVMQN 933 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A LP + + VPL V K +NNW E Sbjct: 934 AALPAVQISVPLVVEAKAANNWDE 957 >gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2] gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2] Length = 1013 Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1011 (42%), Positives = 609/1011 (60%), Gaps = 46/1011 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKES 56 +Q +H+FLVDGSSF++RA++ + K+ DGLP A+ FC +++ ++ Sbjct: 10 VQSGDHVFLVDGSSFVFRAYFQSIRQDAKYNYRSDGLPTGAVRLFCTKIFQFVREGAAGV 69 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116 +H A+IFD +FR EIYP YK NR + PE L+PQ PL+R A +AFG+ +E +E Sbjct: 70 KPTHLAIIFDKSENSFRKEIYPPYKGNRSEPPEDLIPQFPLMRAAVRAFGLLPVEQDRYE 129 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----------KEEKIDIE 166 ADD+IATY A + G VTIIS DKDLMQL+ P +YD +E +I ++ Sbjct: 130 ADDLIATYARQARERGADVTIISADKDLMQLIGPGVSMYDPASGEAGAKGSREERRIGVD 189 Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226 V+ +G+PPEK+V +QAL GDS DN+PG GIG KTAA L+ EYG+L+ +L A IKQ Sbjct: 190 EVLAYFGVPPEKVVDVQALAGDSTDNVPGARGIGLKTAAQLIGEYGDLDTLLARAGEIKQ 249 Query: 227 KKRRENILEYAETA--RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 KRRE + + A R SRKLV L DV + PL+ L L G L++F KALEFT L Sbjct: 250 PKRREILTDADSVALIRTSRKLVELVCDVEVETPLDDLRLAAPEGKTLVAFCKALEFTTL 309 Query: 285 INRVATTYDCDAANIEPVVLDINTTENKG------------IAIETEIDRDTTIKTSQFS 332 RVA + A IEP D + G A ET + + + Sbjct: 310 TRRVAEACAVEPALIEP---DPDFAGEAGWRGRNGAPPPVSTAAETPSAENLPQGPKRNA 366 Query: 333 SLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF 392 + + P +L R + + +Y IV+ + ++ ++ + G + Sbjct: 367 RYGAEAPQQTIATGPGELAAARAAQARAEKFDLGAYETIVSFERLEAYIAEAIESGIIAI 426 Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL------T 446 T ++D ++ + +++ + + + + D G L + Sbjct: 427 DTETSSLDPMQAELVGLSLCL------APGRAAYVPLRHRGEGAGDLFGGADLVPGQLDS 480 Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506 E L+ LK E LKI N K+D+LVL + GI + +D +L+SYVLD+GR+ H + Sbjct: 481 DETLARLKPMLEAPDVLKIAQNAKFDQLVLAQRGIRLAPVDDTLLLSYVLDAGRTDHGMD 540 Query: 507 SIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 +A+K+ + + S ++ I +++ + E++ E+++V L+LW +L+P+L E Sbjct: 541 VLAEKYFGHRPIQFGAVAGSGRTFIGFARVALDKATEYSAEDADVTLRLWRVLKPRLAAE 600 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 ++ VYE L++PM++ +++ME G+ ID+ +L ++S E ++++ LE I++L+GE FNL Sbjct: 601 RMSAVYETLERPMVETLARMERRGVSIDRAILSRLSGEFAQDMARLEAVIFELAGESFNL 660 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 SPKQLGDILF K+ KT TG W T A L+ + P+ IL+WRQLSK+KST Sbjct: 661 GSPKQLGDILFGKMGLAGARKTATGAWSTAAGVLDDLAEQGVPLAARILDWRQLSKLKST 720 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y D+LP+++N T RVHT Y+LA+T TGRL+S EPNLQNIP++ + G+KIR+AFI+PP + Sbjct: 721 YTDALPSYVNPETGRVHTSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFIAPPGR 780 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 KLISADYSQIELR+LAHIA I+ L F +LDIH M A+E+FGV +E + P++RR AK Sbjct: 781 KLISADYSQIELRLLAHIADISQLRAAFAENLDIHAMTASEMFGVPVEGMPPEVRRRAKA 840 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 INF IIYGIS F LA QL IPR EA YIKRYF RFPGI Y++ TK F R+NGYV TIF Sbjct: 841 INFGIIYGISAFGLANQLAIPREEAGAYIKRYFERFPGIRAYMDATKQFARENGYVTTIF 900 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 GR+ HY I + S R NERAAINAPIQGSAADI RRAM+ + ++LE L+ +MLLQ Sbjct: 901 GRKCHYPRITASNPSERAFNERAAINAPIQGSAADIIRRAMVRMDEALEKAGLSAQMLLQ 960 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDELVFE P+EEI ++ M A P + L VPL+V+ K + NW E Sbjct: 961 VHDELVFEAPDEEIDATIDVVRKVMVDAPHPFLQLAVPLQVDAKAAQNWDE 1011 >gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] Length = 924 Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/977 (42%), Positives = 595/977 (60%), Gaps = 72/977 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 +H++LVDGS +I+RA++A P L+R DG PV A+ GFCNMLWKLL++ + E +H AVI Sbjct: 11 SHVYLVDGSGYIFRAYHALPPLTRS-DGTPVGAVQGFCNMLWKLLEDLKGEDQPTHLAVI 69 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD+ + TFRNEIY YKANRP +PE L+PQ L+R ATQAF +P IE++GFEADD+IATY Sbjct: 70 FDHSSKTFRNEIYDQYKANRPDLPEDLVPQFSLIREATQAFELPCIEMEGFEADDLIATY 129 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 +A +G VT+ S+DKDLMQLV+ L D +K ++I + VI+K+G+ P+K+V +Q+ Sbjct: 130 ARLAADKGARVTVASSDKDLMQLVNDQVTLLDPMKSKRIGHDEVIEKFGVAPDKVVDVQS 189 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L A IKQ KRRE ++E AE AR+SR Sbjct: 190 LAGDSVDNVPGVPGIGIKTAAQLIHEYGDLDTLLERAGEIKQPKRREKLIENAENARVSR 249 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 LV L+ DVPIT L+ D + +L+ FLK++EF L RV Sbjct: 250 LLVTLKPDVPITDELDVFGAADPDAEKLVGFLKSMEFRTLTRRV---------------- 293 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 +G+ ++D+T + P++ Sbjct: 294 ------EEGLG----------------GPVADETGDATA------------------PVD 313 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 Y + + +++W++K + + + TD + A S+ + ++++T Sbjct: 314 RSKYETVQTVEALEKWIEKAKHARVIAVDVETDALSAVASRLVGVSLATAPN-------- 365 Query: 425 ETIFIDLSVHTSQDSTGKNTLTK----EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 E +I L + G + E L LK EN+ LK+G N KYD V RYG Sbjct: 366 EACYIPLGHEGGDLADGGMKPDQIDESEALGRLKAILENDAILKVGQNFKYDLAVFQRYG 425 Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537 + + ++D ML+SYV +G +H + +A++ L +T KE+ + KS +I Sbjct: 426 VRVAPYDDTMLISYVQAAGLHNHGMDELAERHLGHTCISFKEVCGTGKSQKRFSEIDLKT 485 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E+A E++++ L+LW LL+ L + L VYE L++P+ V++ ME+ G+++D L + Sbjct: 486 ATEYAAEDADITLRLWELLKAGLAGKGLSTVYETLERPLPQVLTDMELAGVKVDVAQLSR 545 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 +S++ ++ + EE + L+G KFNL SPKQ+G+ILF ++ P G KTK+G W T A L Sbjct: 546 LSSDFAQKMAEAEETAHKLAGTKFNLGSPKQIGEILFGEMGLPGGKKTKSGAWSTDAAVL 605 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 +++ + + K +L WRQ SK+KSTY+D+L + IN T RVHT +SLA+T TGRL+S E Sbjct: 606 DELAAQGHDLPKALLTWRQFSKLKSTYSDALKDAINPNTGRVHTSFSLAATTTGRLSSSE 665 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+T+ G+KIR AF + P +++ADYSQIELR+LAHIA + L Q F DI Sbjct: 666 PNLQNIPIRTEEGRKIREAFTAEPGHVIVAADYSQIELRLLAHIADVEALKQAFREGQDI 725 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H + A+E+FGV +E + P RR+AK INF IIYGIS F LA L I R EA YI YF Sbjct: 726 HALTASEMFGVPLENMDPTTRRNAKAINFGIIYGISAFGLANNLGIGRDEAKSYIDSYFK 785 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 +FPGI +Y++ K+ + G V TIFGRRIH I S+R ER AINAPIQG+AA Sbjct: 786 KFPGIKDYMDAMKDEAKAKGCVSTIFGRRIHLPGIKDKNPSVRQFTERQAINAPIQGAAA 845 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI RRAM+ + +L D L T+MLLQ+HDELVFE PE E +++ M A LP N Sbjct: 846 DIIRRAMVRMPGALSDAGLKTRMLLQVHDELVFEAPESEADQVIKLVTEVMSTAALPAQN 905 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPL+V K ++ W + Sbjct: 906 LSVPLEVEAKAASTWGQ 922 >gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039] gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039] Length = 1043 Score = 815 bits (2104), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/1025 (43%), Positives = 617/1025 (60%), Gaps = 63/1025 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKES 56 ++ + +FLVDGSSF++RA++ + K+ D LP A+ FC L++ ++ + Sbjct: 29 IEAGDRVFLVDGSSFVFRAYFQSIRQDAKYNYRSDRLPTGAVRLFCTKLFQFIREGAADL 88 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116 +H A+IFD +FR EIYP YK+NR + PE L+PQ PL+R + +AFG+ +E +E Sbjct: 89 KPTHLAIIFDKSENSFRKEIYPPYKSNRSEPPEDLIPQFPLMRASVRAFGLQPVEQDRYE 148 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----------KEEKIDIE 166 ADD+IATY A G V IIS DKDLMQL+ P +YD +E +I E Sbjct: 149 ADDLIATYATQAHALGAEVLIISADKDLMQLIGPGVSMYDPASGEAGAKGARQERRIGQE 208 Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226 V+ +G+ P+K++ +QAL GDS DN+PG GIG KTAA L+ +YG+L+N+L A IKQ Sbjct: 209 EVVAYFGVGPDKVIDVQALAGDSTDNVPGARGIGIKTAAQLINDYGDLDNLLKLAREIKQ 268 Query: 227 KKRRENILEYAETARL---SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283 KRRE IL E+ L SRKLV L DVP+ IPL L L +L+++LKALEFT Sbjct: 269 PKRRE-ILTEPESVGLIEISRKLVTLVRDVPVEIPLADLGLHAPEPHKLVAYLKALEFTT 327 Query: 284 LINRVATTYDCDAANIEP----------------VVLDI------NTTENKGIAIETEID 321 L RVA Y D A +EP V+++ TE G E+ Sbjct: 328 LTKRVAEAYGVDLAAVEPDPAFCGAAGWRGRNGEVLVEAEPKAGEGATEPAGAEASGEVA 387 Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381 + K + + + K P R + + +Y IV + + + Sbjct: 388 TRSGPKRN--ARYGEPVEKAALGSGPGLFASARAAEGRAGTFEHSAYQTIVTLEALDAVI 445 Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST- 440 G + T ++D + +A +L + +F V HTS + Sbjct: 446 AAAYEAGLLAIDTETTSLDPMLAD---LAGLSLCAEPGKAFYVPV------GHTSGEGQD 496 Query: 441 ---GKNTLTKE-----ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLM 492 GK L + +L LK E+ LKIG N+KYD +VL ++G+ MR +D +L+ Sbjct: 497 LFEGKGLLPGQLPIGVVLERLKPLLEDPSILKIGQNVKYDWIVLKQHGVEMRPLDDTLLL 556 Query: 493 SYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549 SYVLD+G + H + +++K L + + S ++ I +++ + E+A E+++V Sbjct: 557 SYVLDAGLTDHGMDVLSEKHLGHKPIPFSAVAGSGRTFIGFARVAIDKATEYAAEDADVT 616 Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609 L+LW +L+P+L EK+ VYE L++PMIDV+++ME G+ ID LL ++S++ ++++ Sbjct: 617 LRLWRVLKPRLPAEKMTTVYETLERPMIDVLARMERRGVAIDPPLLGRLSSDFAQDMARY 676 Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669 E IY+L+GEKFNL SPKQLGDILF KL P KT TG W T A LE + + Sbjct: 677 EAEIYELAGEKFNLGSPKQLGDILFGKLGLPGAKKTATGAWSTAAGVLEDLAEQGVDLAA 736 Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729 IL+WRQL+K+KSTY D+LPN+IN + RVHT Y+LA+T TGRL+S EPNLQNIP++ + Sbjct: 737 RILDWRQLAKLKSTYTDALPNYINPSSGRVHTSYALAATTTGRLSSSEPNLQNIPVRNEA 796 Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789 G+KIRRAFI+PP +KL+SADYSQIELR+LAHIA I L F +LDIH M A+E+FGV Sbjct: 797 GRKIRRAFIAPPGRKLVSADYSQIELRLLAHIADIKSLKNAFAENLDIHAMTASEMFGVP 856 Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849 +E + ++RR AK INF IIYGIS F LA QL IPR EAA YIK+YF RFPGI Y++ T Sbjct: 857 VEGMPSEIRRRAKAINFGIIYGISAFGLANQLAIPREEAAAYIKKYFERFPGIRAYMDDT 916 Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 K R+NGYVETIFGR+ HY I + S R +NERAAINAPIQGSAADI RRAMI + Sbjct: 917 KKKARENGYVETIFGRKCHYPRIKASNPSERALNERAAINAPIQGSAADIIRRAMIHMEA 976 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 +L KL+ +MLLQ+HDEL+FEVP++E+ ++ M +A LP ++L VPL+V+ K + Sbjct: 977 ALAAEKLSAQMLLQVHDELIFEVPDDEVEATIAVVRKIMVEAPLPAVHLSVPLQVDAKAA 1036 Query: 970 NNWQE 974 NW E Sbjct: 1037 QNWDE 1041 >gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2] gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2] Length = 935 Score = 813 bits (2099), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/984 (42%), Positives = 605/984 (61%), Gaps = 63/984 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML++ ++++++ +H A Sbjct: 5 KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFRYVEDNKQGDAPTHAA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD+ A TFRN IYP YKANRP++PE L PQ PL R AT+AF I IE +G+EADDIIA Sbjct: 65 VIFDHSAKTFRNAIYPAYKANRPELPEDLRPQFPLTRQATRAFNIACIEAEGYEADDIIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A G VTI+S+DKDLMQLV + D +K +I E V +K+G+ P++++ + Sbjct: 125 TLACRARAAGGTVTILSSDKDLMQLVGDGVEMLDPMKNRRIGPEEVFEKFGVAPDRVIDV 184 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL+GDS+DN+PG PGIG KTAALL+QEYG+LE +L A I Q KRR + + AE R+ Sbjct: 185 QALSGDSVDNVPGAPGIGMKTAALLIQEYGDLETLLARAGEISQPKRRAALQDNAELIRI 244 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 SR+LV L +P+ + L+ L + ++SFL A+EF L RVA + A +E Sbjct: 245 SRRLVALDCAMPLEVTLDSLEVHPPQPEAVLSFLNAMEFRSLTTRVAASLKVAAPPME-- 302 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + ++ + D E P P Sbjct: 303 ----------------------AARGAEVTGAHDA-----PEAAPS------------LP 323 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + +Y + + +++W+ + G + T ++D ++ + I++ Sbjct: 324 FDTAAYECVRDAAALERWIAAIRERGVVAVDTETTSLDEMRAELVGISLCVQAGT----- 378 Query: 423 KVETIFIDLS-VHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKLV 475 +I L D G + LT+ + L+ LK E++ LKIG N+KYD + Sbjct: 379 ---ACYIPLGHRQGGGDLFGSSALTEGQMPVAQALALLKPVLEDDAILKIGQNMKYDAKI 435 Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 L R GIS+ +D MLMSY + +G +SH + +++ ++L + K +L S KS++ D+ Sbjct: 436 LARLGISVAPIDDTMLMSYAMHAGLNSHGMDALSDQYLGHQPIAIKPLLGSGKSAVTFDR 495 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E++++ L+LW L +P+L + VYE L++P++ V++QME+ GIQ+D+ Sbjct: 496 VPIDQAVAYAAEDADITLRLWELFKPQLHRAHVTTVYETLERPLVPVLAQMEMAGIQVDR 555 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L ++S ++ + LE I+D++GEKFN+ SPKQLG+ILF K+ P G K KTG + T Sbjct: 556 DTLSRMSNAFAQKMAGLEAEIHDMAGEKFNVGSPKQLGEILFDKMSLPGGEKGKTGAYAT 615 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A LE + ++ + +L+WRQLSK+KSTY D+L +HIN T RVHT YSL +TGR Sbjct: 616 GADVLEDLAT-EHELPGRVLDWRQLSKLKSTYTDALQDHINPETGRVHTSYSLTGAVTGR 674 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 LAS +PNLQNIP++++ G++IR AF++P ++L+S DYSQIELRILAH+A I L Q F Sbjct: 675 LASTDPNLQNIPVRSEEGRRIREAFVAPKGRRLVSLDYSQIELRILAHVADIPALKQAFR 734 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH M A+E+F V +++++P +RR AK INF +IYGIS F LA LRIPRS A +I Sbjct: 735 EGQDIHAMTASEMFNVPLDQMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRSAAQGFI 794 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 RYF RFPGI Y++ T F + NG+V+T+FGR+IH EIN+ + +RAAINAPI Sbjct: 795 DRYFERFPGIKGYMDDTVAFAKANGFVQTLFGRKIHTPEINA-RGPGAGFAKRAAINAPI 853 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AAD+ RRAM+ + ++ + KMLLQ+HDEL+FEV E+ + T I ME AC Sbjct: 854 QGTAADVIRRAMVRMPAAIA--GIDAKMLLQVHDELLFEVAEDAVDTLIPIAREVMETAC 911 Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976 P ++L V L V NW E + Sbjct: 912 DPAVHLSVRLTVEAGHGANWAEAH 935 >gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b] gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b] Length = 993 Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/996 (43%), Positives = 596/996 (59%), Gaps = 38/996 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +H+FLVDGSSF++RA++ + K+ D LP A+ FC L++ ++ + +H Sbjct: 12 SHVFLVDGSSFVFRAYFQSIRQDAKYNYRADRLPTGAVRLFCAKLFQFVREGAAGVMPTH 71 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A+IFD +FR EIYPDYKA+R + P L+PQ PL+R A +AFG+ IE +EADD+ Sbjct: 72 LAIIFDKSENSFRKEIYPDYKAHRQEPPADLVPQFPLMRAAVRAFGLLPIEQDVYEADDL 131 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----TVKEEKIDIEHVIKKWGIPP 176 IATY +A G V I+S DKDLMQL+ +YD T +E +I VI+ +G+PP Sbjct: 132 IATYAKLARARGADVLIVSADKDLMQLIDDKVSMYDPASGTREERRIGYNEVIEYFGVPP 191 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 EK+V +QAL GDS DN+PG GIG KTAALL+ EYG+L+ +L A IKQ KRRE + + Sbjct: 192 EKVVDVQALAGDSTDNVPGAKGIGVKTAALLINEYGDLDTLLARAGSIKQPKRREVLTDP 251 Query: 237 AETA--RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 A A R S+KLV L D P+ I L+ L L +G L+SFL+A+EFT+L R A TY Sbjct: 252 ASVALIRTSQKLVKLVDDAPLEISLDDLGLHQPDGKTLVSFLQAMEFTQLTRRAAETYGV 311 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 +A IEP + +G E + + L + TP L R Sbjct: 312 EANEIEPDPAFVGPAGWRGRNGEVAEAPAQQAPAAPAAKLPTPEA---GALTPAALAEAR 368 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 ++ I+ Y + + + W+ + G + T ++D + ++++T Sbjct: 369 REEGVATKIDRSLYETVTTLERLDAWIAEAFAAGFVAMDTETTSLDPMSCDLVGVSLATA 428 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK-----------EILSYLKKFFENEHFL 463 + +I L H + S G + L + ++ LK E L Sbjct: 429 PGR--------ACYIPLR-HVA--SAGPDLLGGGEPPPAQIPFDDAIARLKPLLEARSVL 477 Query: 464 KIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEI 520 KI N+KYD LVL G+ + ED ML+SY LDSGR++H + +A+K L + + Sbjct: 478 KIAQNMKYDLLVLACCGVDVAPIEDTMLISYALDSGRNNHGLDELAKKHLGHECIPFAAV 537 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 S +S I ++ + E+A E+++V L+LW +L+P+L E + VYE L++PM+ V+ Sbjct: 538 AGSGRSFIGFARVPLDKATEYAAEDADVALRLWRVLKPRLAAEHMTSVYETLERPMVGVL 597 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 + ME G+ ID+++L ++S E ++++ LE IYDL+GE FNL SPKQLGDILF ++ P Sbjct: 598 AAMERRGVAIDRNILSRLSGEFAQDMARLEAEIYDLAGESFNLGSPKQLGDILFGRMGLP 657 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 KT TG W T+A LE + N IL+WRQLSK+KSTY D+LP +NK T RVH Sbjct: 658 GAKKTATGAWSTSASVLEDLAESGNTFAARILDWRQLSKLKSTYTDALPGFVNKATNRVH 717 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T Y+LA+T TGRL+S EPNLQNIP++ + G+KIR+AF++ P LISADYSQIELR+LAH Sbjct: 718 TSYALAATTTGRLSSSEPNLQNIPVRNEAGRKIRKAFVAEPGHALISADYSQIELRLLAH 777 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 IA I L Q F +DIH A+E+FGV ++ + +RR AK INF IIYGIS F LA Q Sbjct: 778 IADIPQLRQAFAEGIDIHAKTASEMFGVPVQGMPSDVRRRAKAINFGIIYGISAFGLANQ 837 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L IPR EAA YIKRYF RFPGI +Y++KTK VR+ G V TIFGR+ H+ I S +S R Sbjct: 838 LGIPREEAAAYIKRYFERFPGIRDYMDKTKRLVREQGVVTTIFGRKCHFPRIGSSNASER 897 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ERAAINAPIQG+AADI RRAM + +L + +ML+Q+HDELVFE P EE T Sbjct: 898 AFFERAAINAPIQGAAADIIRRAMARMDAALATAGCSARMLMQVHDELVFEAPLEETETT 957 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 ++ ME+A P L VPL+V + + NW E + Sbjct: 958 IAVVKRVMEEAPHPAATLTVPLQVEARAAQNWDEAH 993 >gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] Length = 1024 Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1008 (42%), Positives = 613/1008 (60%), Gaps = 47/1008 (4%) Query: 5 NHLFLVDGSSFIYRAFYAT---PLLS--RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 + + LVDGSSFI+RA++ + P R DGLP A+ FC + + +Q S Sbjct: 24 DQVLLVDGSSFIFRAYFQSINQPERYNFRPSDGLPTGAVRLFCAKIAQFVQEGAAGVKPS 83 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H ++FD +FR EI+PDYK +RP PE L Q+PL+R A +AFG+ IE++ +EADD Sbjct: 84 HLGIVFDKSEGSFRKEIFPDYKGHRPDAPEDLKRQMPLMREAVRAFGLEPIELERYEADD 143 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHVI 169 +IATY AE G V I+S+DKDLMQLV YD E +D ++ Sbjct: 144 LIATYARQAEARGAGVIIVSSDKDLMQLVGDLVRFYDFESGQQGKPGYRPERNLDAAAIV 203 Query: 170 KKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++W G+ P ++ AL GD+ DN+PG+PGIG KTAA+L++E+G+LE +L A+ IKQ K Sbjct: 204 ERWEGLSPAQIGDALALIGDTSDNVPGVPGIGLKTAAVLIKEFGSLEALLERAAEIKQPK 263 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 RRE +L E ARLSR+LV L VP+ +PLE L L + RL+ FLKA+EF L R+ Sbjct: 264 RRETLLANIEQARLSRRLVTLDEAVPVPVPLEALRLRKPDPDRLVGFLKAMEFNTLTRRI 323 Query: 289 ATTY--DCDAANIEPVVLDINTTE---NKGIAIETEIDRD-----TTIKTSQFSSLSDQT 338 A+ D +A +P +L KG + T D + F+ L Sbjct: 324 ASLLHVDPEAVKPDPALLPGGAASYANEKGGSDVTPFFGDEARDQPAAEVDPFADLGLPD 383 Query: 339 SKINS----EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394 + + E TP L R + + P + D+Y I + + WV + G + Sbjct: 384 APLKPRGPVEATPGSLVAARAAEAVK-PFDTDAYETITSLDRLDAWVAEAAEAGVLAVDT 442 Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-----I 449 T+ +DA + + ++++T + +I LS S+D G+ L + + Sbjct: 443 ETNALDAHRADLVGVSLATAPGR--------AAYIPLSHRGSEDLFGEGLLPNQLPWEAV 494 Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509 + LK E+ LK+G N+KYD LVL R+GI +R ++D ML+SYVLD+G+ SH + +A Sbjct: 495 RARLKPLLEDPAVLKVGQNLKYDWLVLARHGIEVRPYDDTMLISYVLDAGKGSHGMDELA 554 Query: 510 QKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 ++ L + T ++ + ++ + D++ + +A E+++V L+LW L++P+L E+ Sbjct: 555 RRHLGHQPITFADVTGTGRTKVTFDRVPLDKATAYAAEDADVTLRLWRLMKPRLAAERRA 614 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 VYE L++P++ V+++ME GI++D+ +L ++S + S++L LE I +++GE F++SSP Sbjct: 615 TVYETLERPLVPVLARMESCGIRVDRGMLSRLSGDFSQSLARLEAEIQEMAGESFSVSSP 674 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQ+GDILF K P KT +GQW T A LE++ + + K ILEWRQLSK+KSTY D Sbjct: 675 KQIGDILFGKFGLPGAKKTPSGQWATPATLLEELAGQGHALPKKILEWRQLSKLKSTYTD 734 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 +L H ++ T RVHT ++LA+T TGRL+S +PNLQNIPI+T+ G++IR+AF++ KLI Sbjct: 735 TLQEHADRETNRVHTSFALAATTTGRLSSSDPNLQNIPIRTEEGRRIRQAFVADEGHKLI 794 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 SADYSQIELR+LAHIA I L + F +DIH A+ +FGV +++++P +RR AKTINF Sbjct: 795 SADYSQIELRLLAHIADIPQLREAFAAGIDIHAATASAMFGVPLDQMTPDLRRRAKTINF 854 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 IIYGIS F LA +L IP+ EAA +IK+YF RFPGI YI+ K R GYV T+FGR Sbjct: 855 GIIYGISAFGLADRLGIPQGEAAAFIKQYFERFPGIRAYIDDIKKTCRDKGYVTTLFGRV 914 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 HY +I S R ER AINAPIQGSAADI RRAM+ + +L L T+MLLQ+HD Sbjct: 915 CHYPQIRSNNPQERASVERQAINAPIQGSAADIIRRAMVRMEGALAAAGLTTRMLLQVHD 974 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ELVFE P++E+ A II ME+A P + LRVPL V K + NWQE Sbjct: 975 ELVFEAPDDEVERALPIIARVMEEAPHPAVQLRVPLAVEAKAATNWQE 1022 >gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] Length = 937 Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/980 (43%), Positives = 594/980 (60%), Gaps = 61/980 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS+FI+RA++A P L+RK DGLPV A+AGFCNML++ ++N++ +H A Sbjct: 5 KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD+ + TFRNEIYP YKA RP+ PE L PQ PL R AT+AF I IE +GFEADDIIA Sbjct: 65 VIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 + A G +VTI+S+DKDLMQLV + D +K ++I + V +K+G+ PE++V + Sbjct: 125 ALSCKARDAGGSVTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVFEKFGVYPERVVDV 184 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDSIDN+PG PGIG KTAALL+QEYG+LE++L A IKQ KRR I E AE R+ Sbjct: 185 QALAGDSIDNVPGAPGIGIKTAALLIQEYGDLESLLARAGEIKQPKRRAAIEENAEQIRI 244 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L + P+T LE L + L+ FL +EF L RVA + +EP Sbjct: 245 SKRLVALDCNTPLTFSLEDLEVRLPVADDLLGFLNRMEFRTLTTRVAASL-----KVEP- 298 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + + + +E P+ +E+++ + P Sbjct: 299 ------------------------------PPAPTAAVLRNEGVPE--IVEQVE--AALP 324 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 ++ SY I + + + W+ ++ +G + T ++D ++ + I++ Sbjct: 325 FDSASYACIRDAEALAAWIARIRDLGHVAIDTETTSLDEMRAELVGISLCVEAGA----- 379 Query: 423 KVETIFIDLSVHTSQ-DSTGKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYDKLV 475 +I L D G + L + LS LK E+E LKIG N+KYD + Sbjct: 380 ---ACYIPLGHRAGGGDLFGASELVADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKI 436 Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 L R+GI + +D MLMSY + +GR H + + +L + K +L S KS I D+ Sbjct: 437 LARHGIRVAPIDDTMLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDR 496 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V +LW L +P+L ++ VYE L++P++ V+++ME+ G+Q+D+ Sbjct: 497 VPVEQAVCYAAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDR 556 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L ++S ++ + LE I+ L+G FN+ SPKQLG+ILF K+ P G K K G W T Sbjct: 557 DTLSRMSNAFAQKMAGLEAEIHALAGGPFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGT 616 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A LE + + + +L+WRQLSK+KSTY D+L HI+ T RVHT YS+A TGR Sbjct: 617 GADVLEDLAAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGANTGR 676 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 LAS +PNLQNIP++++ G++IR AF++PP K L+S DYSQIELRILAHIA I L Q F Sbjct: 677 LASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFR 736 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH M A+E+F V +E + P +RR AK INF +IYGIS F LA LRIPR++A +I Sbjct: 737 EGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFI 796 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 RYF RFPGI Y+++T F + NG+VET+FGRRI+ EIN+ K RAAINAPI Sbjct: 797 DRYFERFPGIRGYMDETIAFAKANGHVETLFGRRINTPEINA-KGPGAGFARRAAINAPI 855 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AAD+ RRAMI + K++ + MLLQ+HDEL+FEV EE + + ME A Sbjct: 856 QGTAADVIRRAMIRMPKAI--RGMPATMLLQVHDELLFEVEEEAADALIERVREVMEGAA 913 Query: 953 LPKINLRVPLKVNIKVSNNW 972 P + L VPL V NW Sbjct: 914 DPAVKLTVPLTVEAGRGLNW 933 >gi|332559502|ref|ZP_08413824.1| DNA polymerase I [Rhodobacter sphaeroides WS8N] gi|332277214|gb|EGJ22529.1| DNA polymerase I [Rhodobacter sphaeroides WS8N] Length = 937 Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/980 (42%), Positives = 594/980 (60%), Gaps = 61/980 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS+FI+RA++A P L+RK DGLPV A+AGFCNML++ ++N++ +H A Sbjct: 5 KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD+ + TFRNEIYP YKA RP+ PE L PQ PL R AT+AF I IE +GFEADDIIA Sbjct: 65 VIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 + A G +VTI+S+DKDLMQLV + D +K ++I + V +K+G+ PE++V + Sbjct: 125 ALSCKARDAGGSVTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVFEKFGVYPERVVDV 184 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDSIDN+PG PGIG KTAALL+QEYG+LE++L A IKQ KRR I E AE R+ Sbjct: 185 QALAGDSIDNVPGAPGIGIKTAALLIQEYGDLESLLARAGEIKQPKRRAAIEENAEQIRI 244 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L D P+T LE L + L+ FL +EF L RVA + +EP Sbjct: 245 SKRLVALDCDTPLTFSLEDLEVRLPVADDLLGFLNRMEFRTLTTRVAASL-----KVEP- 298 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + + + +E P+ +E+++ + P Sbjct: 299 ------------------------------PPAPTAAVLRNEGVPE--IVEQVE--AALP 324 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 ++ SY + + + + W+ ++ +G + T ++D ++ + I++ Sbjct: 325 FDSASYACVRDAEALAAWIARIRDLGHVAIDTETTSLDEMRAELVGISLCVEAGA----- 379 Query: 423 KVETIFIDLSVHTSQ-DSTGKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYDKLV 475 +I L D G + L + LS LK E+E LKIG N+KYD + Sbjct: 380 ---ACYIPLGHRAGGGDLFGASELVADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKI 436 Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 L R+GI + +D MLMSY + +GR H + + +L + K +L S KS I D+ Sbjct: 437 LARHGIRVAPIDDTMLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDR 496 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V +LW L +P+L ++ VYE L++P++ V+++ME+ G+Q+D+ Sbjct: 497 VPVEQAVCYAAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDR 556 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L ++S ++ + LE I+ L+G FN+ SPKQLG+ILF K+ P G K K G W T Sbjct: 557 DTLSRMSNAFAQKMAGLEAEIHALAGGPFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGT 616 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A LE + + + +L+WRQLSK+KSTY D+L HI+ T RVHT YS+A TGR Sbjct: 617 GADVLEDLAAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGANTGR 676 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 LAS +PNLQNIP++++ G++IR AF++PP K L+S DYSQIELRILAHIA I L Q F Sbjct: 677 LASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFR 736 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH M A+E+F V +E + P +RR AK INF +IYGIS F LA LRIPR++A +I Sbjct: 737 EGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFI 796 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 RYF RFPGI Y+++T F + NG+VET+FGRRI+ EIN+ K RAAINAPI Sbjct: 797 DRYFERFPGIRGYMDETIAFAKANGHVETLFGRRINTPEINA-KGPGAGFARRAAINAPI 855 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AAD+ RRAMI + K++ + MLLQ+HDEL+FEV E+ + + ME A Sbjct: 856 QGTAADVIRRAMIRMPKAI--RGMPATMLLQVHDELLFEVEEKAADALIERVREVMEGAA 913 Query: 953 LPKINLRVPLKVNIKVSNNW 972 P + L VPL V NW Sbjct: 914 DPAVKLTVPLTVEAGRGLNW 933 >gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] Length = 937 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/980 (42%), Positives = 595/980 (60%), Gaps = 61/980 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS+FI+RA++A P L+RK DGLPV A+AGFCNML++ ++N++ +H A Sbjct: 5 KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD+ + TFRNEIYP YKA RP+ PE L PQ PL R AT+AF I IE +GFEADDIIA Sbjct: 65 VIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 + A G +VTI+S+DKDLMQLV + D +K ++I + V +K+G+ PE++V + Sbjct: 125 ALSCKARDAGGSVTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVFEKFGVYPERVVDV 184 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDSIDN+PG PGIG KTAALL+QEYG+LE++L A IKQ KRR I E AE R+ Sbjct: 185 QALAGDSIDNVPGAPGIGIKTAALLIQEYGDLESLLARAGEIKQPKRRAAIEENAEQIRI 244 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L + P+T LE L + L+ FL +EF L RVA + +EP Sbjct: 245 SKRLVALDCNTPLTFSLEDLEVRLPVADDLLGFLNRMEFRTLTTRVAASL-----KVEP- 298 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + + + +E P+ +E+++ + P Sbjct: 299 ------------------------------PPAPTAAVLRNEGVPE--IVEQVE--AALP 324 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 ++ SY + + + + W+ ++ +G + T ++D ++ + I++ Sbjct: 325 FDSASYACVRDAEALAAWIARIRDLGHVAIDTETTSLDEMRAELVGISLCVEAGA----- 379 Query: 423 KVETIFIDLSVHTSQ-DSTGKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYDKLV 475 +I L D G + L + LS LK E+E LKIG N+KYD + Sbjct: 380 ---ACYIPLGHRAGGGDLFGASELVADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKI 436 Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 L R+GI + +D MLMSY + +GR H + + +L + K +L S KS I D+ Sbjct: 437 LARHGIRVAPIDDTMLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDR 496 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V +LW L +P+L ++ VYE L++P++ V+++ME+ G+Q+D+ Sbjct: 497 VPVEQAVCYAAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDR 556 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L ++S ++ + LE I+ L+G FN+ SPKQLG+ILF K+ P G K K G W T Sbjct: 557 DTLSRMSNAFAQKMAGLEAEIHALAGGPFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGT 616 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A LE + + + +L+WRQLSK+KSTY D+L HI+ T RVHT YS+A TGR Sbjct: 617 GADVLEDLAAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGANTGR 676 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 LAS +PNLQNIP++++ G++IR AF++PP K L+S DYSQIELRILAHIA I L Q F Sbjct: 677 LASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFR 736 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH M A+E+F V +E + P +RR AK INF +IYGIS F LA LRIPR++A +I Sbjct: 737 EGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFI 796 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 RYF RFPGI Y+++T +F + NG+VET+FGRRI+ EIN+ K RAAINAPI Sbjct: 797 DRYFERFPGIRGYMDETISFAKANGHVETLFGRRINTPEINA-KGPGAGFARRAAINAPI 855 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AAD+ RRAMI + K++ + MLLQ+HDEL+FEV EE + + ME A Sbjct: 856 QGTAADVIRRAMIRMPKAI--RGMPATMLLQVHDELLFEVEEEAADALIERVREVMEGAA 913 Query: 953 LPKINLRVPLKVNIKVSNNW 972 P + L VPL V NW Sbjct: 914 DPAVKLTVPLTVEAGRGLNW 933 >gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131] gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131] Length = 937 Score = 804 bits (2077), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/980 (42%), Positives = 594/980 (60%), Gaps = 61/980 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS+FI+RA++A P L+RK DGLPV A+AGFCNML++ ++N++ +H A Sbjct: 5 KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD+ + TFRNEIYP YKA RP+ PE L PQ PL R AT+AF I IE +GFEADDIIA Sbjct: 65 VIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 + A G +VTI+S+DKDLMQLV + D +K ++I + V +K+G+ PE++V + Sbjct: 125 ALSCKARDAGGSVTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVFEKFGVYPERVVDV 184 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDSIDN+PG PGIG KTAALL+QEYG+LE++L A IKQ KRR I E AE R+ Sbjct: 185 QALAGDSIDNVPGAPGIGIKTAALLIQEYGDLESLLARAGEIKQPKRRAAIEENAEQIRI 244 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L + P+T LE L + L+ FL +EF L RVA + +EP Sbjct: 245 SKRLVALDCNTPLTFSLEDLEVRLPVADDLLGFLNRMEFRTLTTRVAASL-----KVEP- 298 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + + + +E P+ +E+++ + P Sbjct: 299 ------------------------------PPAPTAAVLRNEGVPE--IVEQVE--AALP 324 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 ++ SY + + + + W+ ++ +G + T ++D ++ + I++ Sbjct: 325 FDSASYACVRDAEALAAWIARIRDLGHVAIDTETTSLDEMRAELVGISLCVEAGA----- 379 Query: 423 KVETIFIDLSVHTSQ-DSTGKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYDKLV 475 +I L D G + L + LS LK E+E LKIG N+KYD + Sbjct: 380 ---ACYIPLGHRAGGGDLFGASELVADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKI 436 Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 L R+GI + +D MLMSY + +GR H + + +L + K +L S KS I D+ Sbjct: 437 LARHGIRVAPIDDTMLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDR 496 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V +LW L +P+L ++ VYE L++P++ V+++ME+ G+Q+D+ Sbjct: 497 VPVEQAVCYAAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDR 556 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L ++S ++ + LE I+ L+G FN+ SPKQLG+ILF K+ P G K K G W T Sbjct: 557 DTLSRMSNAFAQKMAGLEAEIHALAGGPFNVGSPKQLGEILFEKMGLPGGQKGKNGAWGT 616 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A LE + + + +L+WRQLSK+KSTY D+L HI+ T RVHT YS+A TGR Sbjct: 617 GADVLEDLAAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGANTGR 676 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 LAS +PNLQNIP++++ G++IR AF++PP K L+S DYSQIELRILAHIA I L Q F Sbjct: 677 LASTDPNLQNIPVRSEEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFR 736 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH M A+E+F V +E + P +RR AK INF +IYGIS F LA LRIPR++A +I Sbjct: 737 EGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFI 796 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 RYF RFPGI Y+++T F + NG+VET+FGRRI+ EIN+ K RAAINAPI Sbjct: 797 DRYFERFPGIRGYMDETIAFAKANGHVETLFGRRINTPEINA-KGPGAGFARRAAINAPI 855 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AAD+ RRAMI + K++ + MLLQ+HDEL+FEV EE + + ME A Sbjct: 856 QGTAADVIRRAMIRMPKAI--RGMPATMLLQVHDELLFEVEEEAADALIERVREVMEGAA 913 Query: 953 LPKINLRVPLKVNIKVSNNW 972 P + L VPL V NW Sbjct: 914 DPAVKLTVPLTVEAGRGLNW 933 >gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10] gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10] Length = 928 Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/982 (41%), Positives = 594/982 (60%), Gaps = 78/982 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 +H++L+DGS +I+RA++A P L+R DG P A+ GFCNMLWKLL++ + + SH AVI Sbjct: 11 SHVYLIDGSGYIFRAYHALPPLTRT-DGTPTGAVQGFCNMLWKLLEDLKGDDQPSHLAVI 69 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD+ TFRN++Y YKANRP PE L+PQ ++R AT+AFG P +E++ +EADDIIATY Sbjct: 70 FDHSGKTFRNDLYDLYKANRPPAPEDLIPQFSIIRDATRAFGTPCVELENYEADDIIATY 129 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 AE G VTI+S+DKDLMQLV+ ++D +K ++I + V++K+G+ P+K++ +Q+ Sbjct: 130 ARQAEALGADVTIVSSDKDLMQLVTDKVSMFDAMKNKRIQVPEVMEKFGVGPDKVIDIQS 189 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS+DN+PG+PGIG KTAALL+ EYG+L+ +L A IKQK RRE +L +AE AR+SR Sbjct: 190 LAGDSVDNVPGVPGIGVKTAALLINEYGDLDTLLERAGEIKQKGRREKLLAHAEDARISR 249 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 LV L+ D P+ LE L + + L+ FL+ +EF +V Sbjct: 250 DLVTLKLDAPMPERLEEFGLAEPDPDVLVPFLREMEFRSFTRKV---------------- 293 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 + + + D T+ IN Sbjct: 294 ------------------EEALGGPRADETGDATAPIN---------------------- 313 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 D Y + + +++W+ K G + TD + + S + I+++T + Sbjct: 314 RDDYECVTTMEALERWIAKSFEAGQIAVDTETDALSSTASGLVGISLATAPGR------- 366 Query: 425 ETIFIDLSVHTSQDSTGKNTLTK---------EILSYLKKFFENEHFLKIGHNIKYDKLV 475 +I L+ H TG T + L LK E+ LKIG N KYD V Sbjct: 367 -ACYIPLA-HVDPQGTGDMFDTGAAPEQIPMDQALKVLKPLLEDPAVLKIGQNFKYDLGV 424 Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 L RYGI + ++D ML+SYV+++G H + ++A+ L +T KEI + K+ I DK Sbjct: 425 LSRYGIDVAPYDDTMLISYVMEAGLHGHGMDALAELHLGHTCIPFKEICGTGKNQITFDK 484 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E++++ L+LW +L+P L+ +K+ VYE L++PM DV+S+ME GI++D Sbjct: 485 VPLDKATLYAAEDADITLRLWEILKPALVAKKMATVYETLERPMADVLSKMERVGIKVDP 544 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L ++S++ + +++ E ++ +G FN++SPKQ+G+ILF ++ P G KTKTG W T Sbjct: 545 DQLNRLSSDFGQKMMAAEAEAHEAAGRDFNVASPKQIGEILFGEMGLPGGKKTKTGAWST 604 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A L+Q+ + + +LE+RQ +K+KSTY+DSL HIN+ T+RVHT +SLA+T TGR Sbjct: 605 DAAVLDQLAAEGHALPVALLEYRQFAKLKSTYSDSLFAHINRDTKRVHTSFSLAATTTGR 664 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S EPNLQNIPI+T+ G++IR FI+ P L++ADYSQ+ELR+LAHIA + L Q F Sbjct: 665 LSSTEPNLQNIPIRTEAGRQIREVFIAEPGHVLVAADYSQVELRLLAHIANVESLKQAFR 724 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH M A+E+FGV IE + P +RR AK INF +IYGIS F LA Q+ + R EA +I Sbjct: 725 DGTDIHAMTASEVFGVPIEGMDPMVRRKAKAINFGVIYGISAFGLANQIGVKRDEAKAFI 784 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF +FPGI Y+++ K + GYVETIFGRR H+ I ++R ER AINAPI Sbjct: 785 DAYFEKFPGIRAYMDEMKAKAAETGYVETIFGRRAHFPGIRDKNPNMRMFAERQAINAPI 844 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAAD+ RRAMI + +L L KMLLQ+HDELVFEVPE + + M +AC Sbjct: 845 QGSAADVIRRAMIRMDDALNAANLDAKMLLQVHDELVFEVPENQAADLIALTAKVMGEAC 904 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 P + L VPL V+ K W E Sbjct: 905 SPALELSVPLVVDAKAGRTWGE 926 >gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1] gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1] Length = 1047 Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1031 (40%), Positives = 618/1031 (59%), Gaps = 61/1031 (5%) Query: 4 ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 ++ + LVDGSSFI+RA++ + +R DGLP A+ FC + + LQ Sbjct: 16 DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKP 75 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H ++FD +FR E++PDYK +RP P+ L Q+PL+R A +AFG+ A+E+ +EAD Sbjct: 76 THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEAD 135 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168 D+IATY AE G V I+S+DKDLMQLVS YD E +D E + Sbjct: 136 DLIATYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREAI 195 Query: 169 IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 I KW G+ PE++ AL GD+ DN+PG+PGIG KTAA L++EYG+LE +L AS IKQ Sbjct: 196 IAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERASEIKQP 255 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 KRRE +L + A+LSR+LV L VP+ +PL+ L + + +L+ FLKA+EF L R Sbjct: 256 KRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 315 Query: 288 VATTY--DCDAANIEPVVL----------------------DINTTENKGIAIETEIDRD 323 +A D +A +P +L D + + A D + Sbjct: 316 IAQMLHVDPEAVKPDPALLPGAQPHAYSNAAGGSDAVPFFGDAVPVDPETAAAPERTDGE 375 Query: 324 TTIKTSQFSSLSD--------QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375 + + +D + + ++E TP L R + S P + +Y I Sbjct: 376 APPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAE-SVKPFDTAAYETIATVA 434 Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431 ++ W+ + G + TD +DA + + ++++T + K E DL Sbjct: 435 QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 494 Query: 432 SVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 + + + +I L LK E+ LK+G N+KYD VLHRYGI +R F Sbjct: 495 FGESGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRYGIDVRPF 554 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543 +D ML+SYVLD+G+ H + +A++ L + T ++ + ++ + D+++ + +A Sbjct: 555 DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATAYAA 614 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 E+++V L+LW +++P+L+ E + VYE L++P++ V+++ME GI ID+++L ++S + S Sbjct: 615 EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 674 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L LEE I + +GE+F +SSPKQ+GD+LF K+ P KT +GQW T A LE++ Sbjct: 675 QILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 734 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 + + K IL +RQLSK+KSTY DSL H ++ T RVHT ++LA+T TGRL+S +PNLQNI Sbjct: 735 GHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 794 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 PI+T+ G++IRRAF++P KKLISADYSQIELR+LAHIA I L + FE +DIH A+ Sbjct: 795 PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATAS 854 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 +FGV +++++ +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI Sbjct: 855 AMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 914 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 +YI+ TK R+ GYV T+FGR HY +I S S R ER AINAPIQG+AADI RRA Sbjct: 915 DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 974 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M + +LE KL +MLLQ+HDELVFEVP++E+ +I ME+A P + LRVPL Sbjct: 975 MTRMEDALEAKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLV 1034 Query: 964 VNIKVSNNWQE 974 V + + NW+E Sbjct: 1035 VEARAAGNWEE 1045 >gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831] gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831] Length = 1060 Score = 801 bits (2069), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1034 (41%), Positives = 628/1034 (60%), Gaps = 66/1034 (6%) Query: 5 NHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 + + LVDGSSFI+RA++ + SR DGLP A+ FC + + LQ+ ++ + Sbjct: 27 DQVILVDGSSFIFRAYFQSINQDQKYNSRPSDGLPTGAVRLFCTKIAQFLQDGAAGTMPT 86 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H ++FD +FR E++PDYK +RP P+ L Q+PL+R A +AFG+ A+E++ +EADD Sbjct: 87 HLGIVFDKSEGSFRKEMFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELERYEADD 146 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHVI 169 +IATYT AE G V I+S+DKDLMQLV P YD E +D+E ++ Sbjct: 147 LIATYTRQAEARGAGVIIVSSDKDLMQLVGPQVRFYDFESGAKGKPGYRPERNLDVEAIV 206 Query: 170 KKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 KW G+ P ++ AL GD+ DN+PG+PGIG KTAA L++E+G+LE +L A IKQ K Sbjct: 207 AKWEGLQPNQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEFGSLEALLERAGEIKQPK 266 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 RRE +L + A+LSR+LV L DVP+ +PL+ L + N +L+ FLKA+EF L R+ Sbjct: 267 RRETLLANVDQAKLSRRLVALMEDVPVPVPLDDLGVPQPNPEKLVGFLKAMEFNTLTRRI 326 Query: 289 ATTY--DCDAANIEPVVLDINTTENKGIAI-----------ETEIDRDTTIKTSQ----- 330 A D +A +P +L G A D +T ++ Sbjct: 327 AQMLHVDPEAVKPDPRLLPGARPHGYGNAAGGSDAVPFFGDSVPPDPETAAAGAERPPGA 386 Query: 331 ----------FSSLS--DQTSKINS--EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKD 376 F+ L D +K + E TP + R + S P + +Y + + + Sbjct: 387 APPEGGEIDPFADLDLPDAPAKPRAPVEATPGNVVAARAAE-SVAPFDTAAYETVSSLEQ 445 Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD-------TSFKVETIFI 429 + W+ + E G + TD++DA + + ++++ + + KV+ Sbjct: 446 LDAWIAEAEEAGVIAVDTETDSLDAHRAGLVGVSLAVATGRACYIPLAHVQAAKVQADAT 505 Query: 430 DLSVHTSQDS------TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 DL + S G+ L KE ++ LK EN LK+G N+KYD +VL RYGI + Sbjct: 506 DLFGEGAAPSDVVEPVPGQIPL-KEAVARLKPLLENPGVLKVGQNLKYDWVVLARYGIEV 564 Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540 F+D ML+SYVLD+G+ H + +A++ L + T ++ + ++ + D+++ + Sbjct: 565 APFDDTMLISYVLDAGKGGHGMDELARRHLGHQPITFSDVAGTGRNKVTFDRVAIDKATA 624 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 +A E+++V L+LW +++P+L+ E + VYE L++P++ V+++ME GI++D+++L ++S Sbjct: 625 YAAEDADVTLRLWRMMKPRLVAEHRVAVYETLERPLLPVIARMEQRGIRVDREMLSRLSG 684 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 + S+ L+ LEE I + +GEKF++ SPKQ+GDILF K+ P KT +GQW T A LE++ Sbjct: 685 DFSQILVRLEEEIQEDAGEKFSVGSPKQIGDILFGKMGLPGAKKTPSGQWATPATLLEEL 744 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 + + K ILEWRQLSK+KSTY D+L H ++ T RVHT +SLA+T TGRL+S EPNL Sbjct: 745 AQAGHELPKKILEWRQLSKLKSTYTDALQAHADRETARVHTSFSLAATTTGRLSSSEPNL 804 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIPI+T+ G++IRRAF++ P +LISADYSQIELR+LAH+A I L + FE+ +DIH Sbjct: 805 QNIPIRTEEGRRIRRAFVAAPGNRLISADYSQIELRLLAHMADIPELRKAFEDGIDIHAA 864 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A+ +FGV +++++P +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF +FP Sbjct: 865 TASAMFGVPLKEMTPDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFEQFP 924 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 GI +YIE TK R GYV T+FGR HY +I S S R ER AINAPIQGSAADI Sbjct: 925 GIRDYIETTKKSCRDKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGSAADII 984 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 RRAM + +L KL +MLLQ+HDELVFEV E+E+ II ME+A P + L+V Sbjct: 985 RRAMTRMEAALAAKKLNARMLLQVHDELVFEVAEDEVERTIPIIRGVMEEAPAPALTLKV 1044 Query: 961 PLKVNIKVSNNWQE 974 PL V + NWQE Sbjct: 1045 PLVVEANAAGNWQE 1058 >gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] Length = 1047 Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/1031 (40%), Positives = 618/1031 (59%), Gaps = 61/1031 (5%) Query: 4 ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 ++ + LVDGSSFI+RA++ + +R DGLP A+ FC + + LQ Sbjct: 16 DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKP 75 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H ++FD +FR E++PDYK +RP P+ L Q+PL+R A +AFG+ A+E+ +EAD Sbjct: 76 THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEAD 135 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHV 168 D+IATY AE G V I+S+DKDLMQLVS YD E +D E + Sbjct: 136 DLIATYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREAI 195 Query: 169 IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 I KW G+ PE++ AL GD+ DN+PG+PGIG KTAA L++EYG+LE +L AS IKQ Sbjct: 196 IAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERASEIKQP 255 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 KRRE +L + A+LSR+LV L VP+ +PL+ L + + +L+ FLKA+EF L R Sbjct: 256 KRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 315 Query: 288 VATTY--DCDAANIEPVVL----------------------DINTTENKGIAIETEIDRD 323 +A D +A +P +L D + + A D + Sbjct: 316 IAQMLHVDPEAVKPDPSLLPGAQPHAYSNAAGGSDAVPFFGDAVPVDPETAAAPERTDGE 375 Query: 324 TTIKTSQFSSLSD--------QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375 + + +D + + ++E TP L R + S P + +Y I Sbjct: 376 APPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAE-SVKPFDTAAYETIATVA 434 Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431 ++ W+ + G + TD +DA + + ++++T + K E DL Sbjct: 435 QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 494 Query: 432 SVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 + + + +I L LK E+ LK+G N+KYD VLHRYGI +R F Sbjct: 495 FGESGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRYGIDVRPF 554 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543 +D ML+SYVLD+G+ H + +A++ L + T ++ + ++ + D+++ + +A Sbjct: 555 DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATAYAA 614 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 E+++V L+LW +++P+L+ E + VYE L++P++ V+++ME GI ID+++L ++S + S Sbjct: 615 EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 674 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L LEE I + +GE+F +SSPKQ+GD+LF K+ P KT +GQW T A LE++ Sbjct: 675 QILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 734 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 + + K IL +RQLSK+KSTY DSL H ++ T RVHT ++LA+T TGRL+S +PNLQNI Sbjct: 735 GHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 794 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 PI+T+ G++IRRAF++P KKLISADYSQIELR+LAHIA I L + FE +DIH A+ Sbjct: 795 PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATAS 854 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 +FGV +++++ +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI Sbjct: 855 AMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 914 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 +YI+ TK R+ GYV T+FGR HY +I S S R ER AINAPIQG+AADI RRA Sbjct: 915 DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 974 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M + +LE KL +MLLQ+HDELVFEVP++E+ +I ME+A P + LRVPL Sbjct: 975 MTRMEDALEAKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLV 1034 Query: 964 VNIKVSNNWQE 974 V + + NW+E Sbjct: 1035 VEARAAGNWEE 1045 >gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756] gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756] Length = 966 Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/980 (42%), Positives = 607/980 (61%), Gaps = 50/980 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LFLVDGS++++RA++A P L+RK DGLPV A+ GFCNMLWKLL++ + ++ +H AVI+D Sbjct: 27 LFLVDGSAYLFRAYHALPPLTRKSDGLPVGAVQGFCNMLWKLLRDMQGDT-PTHLAVIWD 85 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFRN +Y YKA+RP PE L+PQ PLVR AT+AFG+PAIE+ G+EADD+IA Y Sbjct: 86 HSEKTFRNTLYDQYKAHRPPPPEDLIPQFPLVREATRAFGVPAIELPGYEADDLIAAYAC 145 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + G I+S+DKDLMQLV ++D +K +I+ E V +K+G+ PE++V +QAL Sbjct: 146 KAREVGGEAVIVSSDKDLMQLVGDGVSMFDPMKNVRIEREQVFEKFGVYPEQVVDVQALC 205 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DN+PG PGIG KTAA L+ E+G+L+ +L A IKQ KRRE ++ +A+ RLSR L Sbjct: 206 GDSVDNVPGAPGIGIKTAAQLITEFGDLDTLLERAGEIKQPKRRETLINFADQIRLSRAL 265 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 V L D P+ PL+ L + + + L +FL +EF L RV D AA Sbjct: 266 VKLDCDTPLPEPLDDLKVREPDKEVLAAFLDQMEFRSLARRVG---DGSAA--------- 313 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 A+ +DR + S++S + + P I++ Sbjct: 314 --------AVPGSLDRPAAPPKAPVSTVSYMGAAARAAAQPVA---------EPVTIDHA 356 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + + + ++ WV K G +F TD + + + ++++ E Sbjct: 357 AYACVRDLETLRAWVDKATAKGVVAFDTETDALSSATAGLCGVSLAIAPG--------EA 408 Query: 427 IFIDLSVHTSQDSTGKNTLT-------KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 +I + H ++ ++++ LK E+ LK+ N KYD VL R+ Sbjct: 409 CYIPVG-HCEKEGLALEAAADLVQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH 467 Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536 GI + ED ML+SYVL++G H + +++ WL + K++ + K+ I ++ S Sbjct: 468 GIQVSPIEDTMLISYVLEAGLHGHGMDELSELWLGHKPIPFKQVAGTGKAQISFKHVALS 527 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 + +A E+++V L+L+ L+P+L E LL VYE L++PM V++ ME GI++D + L+ Sbjct: 528 EATAYAAEDADVTLRLYETLKPRLAREGLLTVYETLERPMPAVLAAMENDGIKVDPEALR 587 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 ++S E S + E +L G FNL SPKQ+GD+LF +++ G KT TGQW T + Sbjct: 588 RLSNEFSLRMAEFEARATELVGRPFNLGSPKQIGDVLFGEMQIKGGKKTATGQWSTDSDV 647 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + ++ + + +L+WRQLSK+K TY ++L I +RT RVHT Y+LA+T TGRL+S Sbjct: 648 LESLAL-EHELPRVLLDWRQLSKLKGTYTENLVAAIAERTGRVHTSYALAATTTGRLSSS 706 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T+ G+KIR+AFI+P K LISADYSQIELR+LAHI I L + F+ LD Sbjct: 707 DPNLQNIPVRTEEGRKIRKAFIAPQGKVLISADYSQIELRLLAHIGDIPQLKRAFQEGLD 766 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH M A+E+F IE + P +RR AK INF I+YGIS F LA QL IP+ EA YIK YF Sbjct: 767 IHAMTASEMFDTPIEGMDPMIRRRAKAINFGIVYGISAFGLANQLGIPQGEAGAYIKTYF 826 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 RFPGI Y++ TK FVR++GYV TIFGR+I+ EI + R ERAAINAPIQG+A Sbjct: 827 ERFPGIQAYMDATKAFVREHGYVTTIFGRKINIPEIQAKSVGQRQFAERAAINAPIQGAA 886 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ RRAMI + ++L+ L+ +MLLQ+HDELVFE PE E TA +I + MEKA P + Sbjct: 887 ADVMRRAMIRMPEALQAAGLSARMLLQVHDELVFEAPEAEAETARGVIANVMEKAAEPAV 946 Query: 957 NLRVPLKVNIKVSNNWQEEN 976 L VPL V ++ ++NW E + Sbjct: 947 ALSVPLTVEVRAAHNWDEAH 966 >gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1] gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1] Length = 1047 Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1031 (40%), Positives = 617/1031 (59%), Gaps = 61/1031 (5%) Query: 4 ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 ++ + LVDGSSFI+RA++ + +R DGLP A+ FC + + LQ Sbjct: 16 DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKP 75 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H ++FD +FR E++PDYK +RP P+ L Q+PL+R A +AFG+ A+E+ +EAD Sbjct: 76 THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEAD 135 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168 D+IATY+ AE G V I+S+DKDLMQLVS YD E +D E + Sbjct: 136 DLIATYSRQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREAI 195 Query: 169 IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 I KW G+ PE++ AL GD+ DN+PG+PGIG KTAA L++EYG+LE +L A IKQ Sbjct: 196 IAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERAGEIKQP 255 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 KRRE +L + A+LSR+LV L VP+ +PL+ L + + +L+ FLKA+EF L R Sbjct: 256 KRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 315 Query: 288 VATTY--DCDAANIEPVVL----------------------DINTTENKGIAIETEIDRD 323 +A D +A +P +L D + + A D + Sbjct: 316 IAQMLHVDPEAVKPDPALLPGAQPHAYSNAAGGSDAVPFFGDAVPVDPETAAAPERTDGE 375 Query: 324 TTIKTSQFSSLSD--------QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375 + + +D + + ++E TP L R + S P + +Y I Sbjct: 376 APPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAE-SVKPFDTAAYETIATVA 434 Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431 ++ W+ + G + TD +DA + + ++++T + K E DL Sbjct: 435 QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 494 Query: 432 SVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 + + + +I L LK E+ LK+G N+KYD VLHRYGI +R F Sbjct: 495 FGESGAGADASDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRYGIDVRPF 554 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543 +D ML+SYVLD+G+ H + +A++ L + T ++ + ++ + D ++ + +A Sbjct: 555 DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDHVAIDKATAYAA 614 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 E+++V L+LW +++P+L+ E + VYE L++P++ V+++ME GI ID+++L ++S + S Sbjct: 615 EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 674 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L LEE I + +GE+F +SSPKQ+GD+LF K+ P KT +GQW T A LE++ Sbjct: 675 QILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 734 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 + + K IL +RQLSK+KSTY DSL H ++ T RVHT ++LA+T TGRL+S +PNLQNI Sbjct: 735 GHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 794 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 PI+T+ G++IRRAF++P KKLISADYSQIELR+LAHIA I L + FE +DIH A+ Sbjct: 795 PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATAS 854 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 +FGV +++++ +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI Sbjct: 855 AMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 914 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 +YI+ TK R+ GYV T+FGR HY +I S S R ER AINAPIQG+AADI RRA Sbjct: 915 DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 974 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M + +LE KL +MLLQ+HDELVFEVP++E+ +I ME+A P + LRVPL Sbjct: 975 MTRMEDALEAKKLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLV 1034 Query: 964 VNIKVSNNWQE 974 V + + NW+E Sbjct: 1035 VEARAAGNWEE 1045 >gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001] gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001] Length = 1047 Score = 799 bits (2063), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1031 (40%), Positives = 616/1031 (59%), Gaps = 61/1031 (5%) Query: 4 ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 ++ + LVDGSSFI+RA++ + +R DGLP A+ FC + + LQ+ Sbjct: 16 DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQDGAAGVKP 75 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H ++FD +FR E++PDYK +RP P+ L Q+PL+R A +AFG+ A+E++ +EAD Sbjct: 76 THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELERYEAD 135 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168 D+IATY AE G V I+S+DKDLMQLVS YD E +D + + Sbjct: 136 DLIATYARQAEARGAEVIIVSSDKDLMQLVSDRIRFYDFESGAKGKPGYRPERNLDRDAI 195 Query: 169 IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 I KW G+ PE++ AL GD+ DN+PG+PGIG KTAA L++EYG+L +L A+ IKQ Sbjct: 196 IAKWEGLTPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLAQLLERAAEIKQP 255 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 KRRE +L + A+LSR+LV L VP+ +PL+ L + + +L+ FLKA+EF L R Sbjct: 256 KRRETLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 315 Query: 288 VATTY--DCDAANIEPVVL----------------------DINTTENKGIAIETEIDRD 323 +A D +A +P +L D + + A D Sbjct: 316 IAQMLHVDPEAVKPDPALLPGAQPHAYTNAAGGSDAVPFFGDAVPVDPETAAAPERTDGA 375 Query: 324 TTIKTSQFSSLSD--------QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375 + + +D + + +E TP L R + + P + +Y I + Sbjct: 376 APPEAGEADPFADLDLPDQAPKKKRGAAEPTPANLVAARAAEAVK-PFDTAAYETIATVE 434 Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD--------DTSFKVETI 427 ++ W+ + G + TD +DA + + ++++T + K + Sbjct: 435 QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 494 Query: 428 FIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 F D + + + L LK E+ LK+G N+KYD VLHRYGI + F Sbjct: 495 FGDGGAGADESDKQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDFSVLHRYGIDVAPF 554 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543 +D ML+SYVLD+G+ H + +A++ L + T ++ + ++ + D+++ + +A Sbjct: 555 DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATAYAA 614 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 E+++V L+LW +++P+L+ E + VYE L++P++ V+++ME GI ID+++L ++S + S Sbjct: 615 EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 674 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L LEE I + +GEKF +SSPKQ+GD+LF K+ P KT +GQW T A LE++ Sbjct: 675 QILARLEEEIQEDAGEKFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 734 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 + + K IL WRQLSK+KSTY DSL H ++ T RVHT ++LA+T TGRL+S +PNLQNI Sbjct: 735 GHDLPKKILNWRQLSKLKSTYTDSLQEHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 794 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 PI+T+ G++IRRAF++P KKLISADYSQIELR+LAHIA I L + FE LDIH A+ Sbjct: 795 PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATAS 854 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 +FGV +++++ +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI Sbjct: 855 AMFGVPLDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 914 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 +YI+ TK R+ GYV T+FGR HY +I S S R ER AINAPIQG+AADI RRA Sbjct: 915 DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 974 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M + +L KLA +MLLQ+HDELVFEVP++E+ +I H ME+A P ++L VPL Sbjct: 975 MTRMEDALGAEKLAARMLLQVHDELVFEVPDDEVEATIPVIAHVMEEAPAPALSLSVPLV 1034 Query: 964 VNIKVSNNWQE 974 V + + NW+E Sbjct: 1035 VEARAAGNWEE 1045 >gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] Length = 937 Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/975 (42%), Positives = 589/975 (60%), Gaps = 47/975 (4%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS+FI+RA++A P L+RK DGLPV A+AGFCNML++ ++N++ +H A Sbjct: 5 KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD+ + TFRNEIYP YKA RP+ PE L PQ PL R AT+AF I IE +GFEADDIIA Sbjct: 65 VIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNISCIETEGFEADDIIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 A + G TI+S+DKDLMQLV + D +K ++I + VI+K+G+PPE++V + Sbjct: 125 ALACRAREAGGTCTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVIEKFGVPPERVVDV 184 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+QEYG+LE +L A IKQ KRR I + AE R+ Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLIQEYGDLEGLLARAGEIKQPKRRAAIEDNAEQIRI 244 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L + P+ LE L + L+ FL +EF L RVA + +EP Sbjct: 245 SKRLVELDCNTPLDFALEDLEVRLPVADELLGFLNRMEFRTLTTRVAASL-----KVEP- 298 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + + +E P+ +E+++ + P Sbjct: 299 ------------------------------PPAPTAFVVQNESVPE--IVEQVE--AALP 324 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 ++ SY + + + + W+ ++ G + T ++D ++ + I++ ++ Sbjct: 325 FDSASYACVRDAEALAAWIARIRERGHVAIDTETTSLDEMRAELVGISL-CVEAGSACYI 383 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 + + S D LS LK E++ LKIG N+KYD + R+GI Sbjct: 384 PLGHRAGGGDLFGSLDLVADQIPLDLALSMLKPVLEDDAILKIGQNMKYDAKIFARHGIR 443 Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 + +D MLMSY + +GR H + + +L + K +L S KS I D++ Q Sbjct: 444 VAPIDDTMLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVDQAV 503 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E+++V L+LW L +P+L ++ VYE L++P++ V+++ME+ G+Q+D+D L ++S Sbjct: 504 CYAAEDADVTLRLWRLFKPQLHRARVTTVYETLERPLVPVLAEMEMAGVQVDRDTLSRMS 563 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 ++ + +LE I+ L+G FN+ SPKQLG+ILF ++ G K K G W T A LE Sbjct: 564 NAFAQKMAALEAEIHGLAGGPFNVGSPKQLGEILFERMSLQGGVKGKNGAWGTGADVLED 623 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + + + +L+WRQLSK+KSTY D+L HI+ T RVHT YS+A TGRLAS +PN Sbjct: 624 LAAEGHDLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGANTGRLASTDPN 683 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIP++T+ G++IR AF++P K L+S DYSQIELRILAHIA I L Q F DIH Sbjct: 684 LQNIPVRTEEGRRIREAFVAPKGKLLVSVDYSQIELRILAHIADIPALKQAFREGHDIHA 743 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 M AAE+F V +E + P +RR AK INF +IYGIS F LA LRIPR++A +I RYF RF Sbjct: 744 MTAAEMFNVPLEGMDPMVRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFIDRYFERF 803 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 PGI Y+++T F + +G+V+T+FGRRI+ EIN+ K RAAINAPIQG+AAD+ Sbjct: 804 PGIRAYMDETVAFAKAHGFVQTLFGRRINTPEINA-KGPGAGFARRAAINAPIQGTAADV 862 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 RRAMI + K+L+ L KMLLQ+HDEL+FEV E + ME A P + L Sbjct: 863 IRRAMIRMPKALD--GLPAKMLLQVHDELLFEVDEAAADPVIARVREVMESASEPAVKLS 920 Query: 960 VPLKVNIKVSNNWQE 974 VPL V+ NW E Sbjct: 921 VPLTVDAGRGANWAE 935 >gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31] gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31] Length = 973 Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/982 (42%), Positives = 599/982 (60%), Gaps = 55/982 (5%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LFLVDGS++++RA++A P L+RK DGLPV A+ GFCNMLWKL+++ + ++ +H AVI+ Sbjct: 32 RLFLVDGSAYLFRAYHALPPLTRKSDGLPVGAVQGFCNMLWKLMRDMQGDA-PTHLAVIW 90 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D+ TFRN +Y YKA+RP PE L+PQ PLVR AT+AFG+PAIE+ G+EADD+IA Y Sbjct: 91 DHSEKTFRNNLYDKYKAHRPPPPEDLIPQFPLVREATRAFGVPAIELPGYEADDLIAAYA 150 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 G I+S+DKDLMQLV ++D +K +ID + V +K+G+ P+++V +Q+L Sbjct: 151 CKVRDMGGEAVIVSSDKDLMQLVGDGVSMFDPMKGLRIDRDQVFEKFGVYPDRVVDVQSL 210 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS+DN+PG PGIG KTAA L+ EYG+L+ +L A IKQ KRRE ++EYA+ RLSR+ Sbjct: 211 CGDSVDNVPGAPGIGIKTAAQLINEYGDLDTLLERAGEIKQPKRRETLIEYADQIRLSRQ 270 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LV L D P+ P++ L++ + + L FL+ +EF L RV D Sbjct: 271 LVKLDCDTPLPEPIDDLVVREPDKTVLADFLELMEFRSLARRVG---------------D 315 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 N + A +DR T+ +S + + P I++ Sbjct: 316 GNAS-----ASPRTLDRPAAAPTAPVLGVSYMGAAARAAANPVA---------EPATIDH 361 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK--PIAIAISTLDQKDDTSFK 423 +Y +I + + + WV K G +F TD + + + +++AIS Sbjct: 362 AAYVRIQDLETLNAWVAKATAKGIVAFDTETDALSSATAGLCGVSLAIS----------P 411 Query: 424 VETIFIDLSVHTSQDSTGKNTLT-------KEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 E +I + H +D +E+++ LK E+ LKI N KYD VL Sbjct: 412 GEACYIPVG-HCEKDGLALEAAADLVQVPMEEVIAALKPLLEDPAVLKIAQNAKYDIAVL 470 Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RYGI++ ED ML+SYVL++G H + +++ WL + + K++ S K I + Sbjct: 471 ARYGINVGPIEDTMLISYVLEAGLHGHGMDELSELWLGHKPISFKQVAGSGKGQISFKHV 530 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 ++ +A E+++V L+L+ +L+P+L E LL VYE L++P+ V++ ME GI++D D Sbjct: 531 GLAEATAYAAEDADVTLRLYNVLKPRLAREGLLTVYETLERPLPAVLAAMENDGIRVDPD 590 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L+++S E S + E +L G FNL SPKQ+GD+LF ++ G KT TGQW T Sbjct: 591 TLRRLSNEFSMRMADFEARAQELVGRPFNLGSPKQIGDVLFGEMALKGGKKTATGQWSTD 650 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN-KRTQRVHTFYSLASTMTGR 712 + LE + ++ + + +L+WRQLSK+K TY ++L I RVHT Y+LA+T TGR Sbjct: 651 SDVLEALAL-EHELPRVLLDWRQLSKLKGTYTENLIAAIAPGGGNRVHTSYALAATTTGR 709 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+T+ G+KIR+AF++ P K LISADYSQIELR+LAHI I L + F+ Sbjct: 710 LSSSDPNLQNIPIRTEEGRKIRKAFVAAPGKVLISADYSQIELRLLAHIGDIPQLKKAFQ 769 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 LDIH M A+E+F V IE + ++RR AK INF I+YGIS F LA QL IP+ EA YI Sbjct: 770 EGLDIHAMTASEMFNVPIEGMPSEVRRRAKAINFGIVYGISAFGLANQLSIPQGEAGAYI 829 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 K YF RFPGI Y+E TK FVR++GYV TIFGR+I+ +I + R ERAAINAPI Sbjct: 830 KTYFERFPGIQAYMEATKAFVREHGYVTTIFGRKINIPDIGGKSVAHRQFAERAAINAPI 889 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AAD+ RRAM+ + +L+ L+++MLLQ+HDELVFE PE E + M+ A Sbjct: 890 QGAAADVMRRAMVRMPGALKAAGLSSRMLLQVHDELVFEAPEAEAQATIDVAREVMQGAA 949 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 P + + VPL V + + NW E Sbjct: 950 APAVTISVPLTVEARAAANWDE 971 >gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46] gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46] Length = 1016 Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/1008 (41%), Positives = 616/1008 (61%), Gaps = 47/1008 (4%) Query: 5 NHLFLVDGSSFIYRAFYAT---PLLS--RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 + + LVDGSSFI+RA++ + P R DG+P A+ FC + + +Q S Sbjct: 16 DQVLLVDGSSFIFRAYFQSINQPERYNFRPSDGMPTGAVRLFCAKIAQFVQEGAAGIQPS 75 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H ++FD +FR EI+PDYK +RP P+ L Q+PL+R A +AFG+ IE++ +EADD Sbjct: 76 HLGIVFDKSEGSFRKEIFPDYKGHRPDAPDDLKRQMPLMREAVRAFGLEPIELERYEADD 135 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----------IDIEHVI 169 +IATY AE G V I+S+DKDLMQLV YD +K +D ++ Sbjct: 136 LIATYARQAEARGAGVIIVSSDKDLMQLVGELVRFYDFESGQKGKPGYRPERNLDAAAIV 195 Query: 170 KKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++W G+ P ++ AL GD+ DN+PG+PGIG KTAA LL+E+G+LE +L A+ IKQ K Sbjct: 196 ERWEGLSPAQIGDALALIGDTSDNVPGVPGIGLKTAAALLKEFGSLEALLERAAEIKQPK 255 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 RRE +L + + ARLSR+LV L VP+ +PLE L L + RL+ FLKA+EF L R+ Sbjct: 256 RRETLLAHLDQARLSRRLVTLDEAVPVPVPLEALRLRKPDPERLVGFLKAMEFNTLTRRI 315 Query: 289 ATTY--DCDAANIEPVVLDINTT---ENKGIAIETEIDRDTTI-----KTSQFSSL---- 334 A+ D +A +P +L KG + T D +T F+ L Sbjct: 316 ASLLHVDPEAVRPDPALLPGGAAAYANGKGGSDATPFFGDEATAPPAPETDPFADLDLPD 375 Query: 335 SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394 + + +E TP ++ R + + P + SY I + W+ + G + Sbjct: 376 APPRPRGPAEPTPGQVVAARAAEAVK-PFDTASYETITRLDRLDAWIAEAAEAGVVAVDT 434 Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-----I 449 T+ +DA + + ++++T + +I L+ S+D G+ L + + Sbjct: 435 ETNALDAHRADLVGVSLATAPGR--------AAYIPLAHRGSEDLFGEGLLPDQLPWDAV 486 Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509 + LK E+ LK+G N+KYD LVL R+GI ++ ++D ML+SYVLD+G+ SH + +A Sbjct: 487 RARLKPLLEDPAVLKVGQNVKYDWLVLVRHGIEIQPYDDTMLISYVLDAGKGSHGMDELA 546 Query: 510 QKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 ++ L + T ++ + ++ + D++ + +A E+++V L+LW L++P+L E Sbjct: 547 RRHLGHQPITFADVTGTGRAKVTFDRVPLDKATAYAAEDADVTLRLWRLMKPRLAAEHRA 606 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 VYE L++P++ V+++ME GI++D+D+L ++S + S++L LE I +++GE F++SSP Sbjct: 607 TVYETLERPLVPVLARMEREGIRVDRDMLSRLSGDFSQSLARLEAEIQEMAGETFSVSSP 666 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQ+GDILF KL P KT +GQW T A LE++ +P+ + ILEWRQLSK+KSTY D Sbjct: 667 KQIGDILFGKLGLPGAKKTPSGQWATPATLLEELATQGHPLPRKILEWRQLSKLKSTYTD 726 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 SL H + + RVHT ++LA+T TGRL+S +PNLQNIPI+T+ G++IR+AF++ +LI Sbjct: 727 SLQEHAERESDRVHTSFALAATTTGRLSSSDPNLQNIPIRTEEGRRIRQAFVADAGHQLI 786 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 SADYSQIELR+LAH+A I L Q F + LDIH A+ +FGV + +++P +RR AKTINF Sbjct: 787 SADYSQIELRLLAHMADIPQLRQAFADGLDIHAATASAMFGVPLGEMTPDLRRRAKTINF 846 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 IIYGIS F LA +L IP+ EA+ +IK+YF RFPGI YIE TK R GYV T+FGR Sbjct: 847 GIIYGISAFGLADRLGIPQGEASAFIKQYFERFPGIRAYIEDTKKACRDKGYVTTLFGRV 906 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 HY +I S R ER AINAPIQG+AADI RRAM+ + +L L T+MLLQ+HD Sbjct: 907 CHYPQIRSNNPQERASVERQAINAPIQGTAADIIRRAMVRMEGALAGAGLTTRMLLQVHD 966 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ELVFE P++E+ A II ME+A P + L VPL V K + NWQE Sbjct: 967 ELVFEAPQDEVARALPIIARVMEEAPQPAVRLTVPLAVEAKAAANWQE 1014 >gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4] gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1047 Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1031 (40%), Positives = 617/1031 (59%), Gaps = 61/1031 (5%) Query: 4 ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 ++ + LVDGSSFI+RA++ + +R DGLP A+ FC + + LQ Sbjct: 16 DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKP 75 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H ++FD +FR E++PDYK +RP P+ L Q+PL+R A +AFG+ A+E+ +EAD Sbjct: 76 THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEAD 135 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168 D+IATY AE G V I+S+DKDLMQLVS YD E +D E + Sbjct: 136 DLIATYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREAI 195 Query: 169 IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 I KW G+ PE++ AL GD+ DN+PG+PGIG KTAA L++EYG+LE +L AS IKQ Sbjct: 196 IAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERASEIKQP 255 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 KRRE +L + A+LSR+LV L VP+ +PL+ L + + +L+ FLKA+EF L R Sbjct: 256 KRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 315 Query: 288 VATTY--DCDAANIEPVVL----------------------DINTTENKGIAIETEIDRD 323 +A D +A +P +L D + + A D + Sbjct: 316 IAQMLHVDPEAVKPDPSLLPGAQPHAYSNAAGGSDAVPFFGDAVPVDPETAAAPERTDGE 375 Query: 324 TTIKTSQFSSLSD--------QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375 + + +D + + ++E TP L R + S P + +Y I Sbjct: 376 APPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAE-SVKPFDTAAYETIATVA 434 Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431 ++ W+ + G + TD +DA + + ++++T + K E DL Sbjct: 435 QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 494 Query: 432 SVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 + + + +I L LK E+ LK+G N+KYD VLHRYGI + F Sbjct: 495 FGESGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRYGIDVTPF 554 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543 +D ML+SYVLD+G+ H + +A++ L + T ++ + ++ + D+++ + +A Sbjct: 555 DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATAYAA 614 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 E+++V L+LW +++P+L+ E + VYE L++P++ V+++ME GI ID+++L ++S + S Sbjct: 615 EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 674 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L LEE I + +GE+F +SSPKQ+GD+LF K+ P KT +GQW T A LE++ Sbjct: 675 QILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 734 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 + + K IL +RQLSK+KSTY DSL H ++ T RVHT ++LA+T TGRL+S +PNLQNI Sbjct: 735 GHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 794 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 PI+T+ G++IRRAF++P KKLISADYSQIELR+LAHIA I L + FE +DIH A+ Sbjct: 795 PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATAS 854 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 +FGV +++++ +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI Sbjct: 855 AMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 914 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 +YI+ TK R+ GYV T+FGR HY +I S S R ER AINAPIQG+AADI RRA Sbjct: 915 DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 974 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M + +LE +L +MLLQ+HDELVFEVP++E+ +I ME+A P + LRVPL Sbjct: 975 MTRMEDALEAKRLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLV 1034 Query: 964 VNIKVSNNWQE 974 V + + NW+E Sbjct: 1035 VEARAAGNWEE 1045 >gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1052 Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1031 (40%), Positives = 617/1031 (59%), Gaps = 61/1031 (5%) Query: 4 ENHLFLVDGSSFIYRAFYAT-----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 ++ + LVDGSSFI+RA++ + +R DGLP A+ FC + + LQ Sbjct: 21 DDRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKP 80 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H ++FD +FR E++PDYK +RP P+ L Q+PL+R A +AFG+ A+E+ +EAD Sbjct: 81 THLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEAD 140 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIEHV 168 D+IATY AE G V I+S+DKDLMQLVS YD E +D E + Sbjct: 141 DLIATYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREAI 200 Query: 169 IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 I KW G+ PE++ AL GD+ DN+PG+PGIG KTAA L++EYG+LE +L AS IKQ Sbjct: 201 IAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERASEIKQP 260 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 KRRE +L + A+LSR+LV L VP+ +PL+ L + + +L+ FLKA+EF L R Sbjct: 261 KRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLTRR 320 Query: 288 VATTY--DCDAANIEPVVL----------------------DINTTENKGIAIETEIDRD 323 +A D +A +P +L D + + A D + Sbjct: 321 IAQMLHVDPEAVKPDPSLLPGAQPHAYSNAAGGSDAVPFFGDAVPVDPETAAAPERTDGE 380 Query: 324 TTIKTSQFSSLSD--------QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375 + + +D + + ++E TP L R + S P + +Y I Sbjct: 381 APPEAGEADPFADLDLPDQAPKKKRGSNEPTPATLVAARAAE-SVKPFDTAAYETIATVA 439 Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD----TSFKVETIFIDL 431 ++ W+ + G + TD +DA + + ++++T + K E DL Sbjct: 440 QLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATAPGRAAYIPLAHVKPEVKGGDL 499 Query: 432 SVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 + + + +I L LK E+ LK+G N+KYD VLHRYGI + F Sbjct: 500 FGESGAGADASDRQPGQIDFDTALKLLKPLLEDAGTLKVGQNLKYDLSVLHRYGIDVTPF 559 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543 +D ML+SYVLD+G+ H + +A++ L + T ++ + ++ + D+++ + +A Sbjct: 560 DDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATAYAA 619 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 E+++V L+LW +++P+L+ E + VYE L++P++ V+++ME GI ID+++L ++S + S Sbjct: 620 EDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFS 679 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L LEE I + +GE+F +SSPKQ+GD+LF K+ P KT +GQW T A LE++ Sbjct: 680 QILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLPGAKKTPSGQWATPATLLEELAQA 739 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 + + K IL +RQLSK+KSTY DSL H ++ T RVHT ++LA+T TGRL+S +PNLQNI Sbjct: 740 GHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAATTTGRLSSSDPNLQNI 799 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 PI+T+ G++IRRAF++P KKLISADYSQIELR+LAHIA I L + FE +DIH A+ Sbjct: 800 PIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATAS 859 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 +FGV +++++ +RR AKTINF IIYGIS F LA +L I R EA+ +IK+YF RFPGI Sbjct: 860 AMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIR 919 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 +YI+ TK R+ GYV T+FGR HY +I S S R ER AINAPIQG+AADI RRA Sbjct: 920 DYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRA 979 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M + +LE +L +MLLQ+HDELVFEVP++E+ +I ME+A P + LRVPL Sbjct: 980 MTRMEDALEAKRLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAPAPALTLRVPLV 1039 Query: 964 VNIKVSNNWQE 974 V + + NW+E Sbjct: 1040 VEARAAGNWEE 1050 >gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48] gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48] Length = 953 Score = 792 bits (2045), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/988 (43%), Positives = 611/988 (61%), Gaps = 58/988 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGS +I+RA++ P L+RK DGLPV A++GFCNML+KL++ +R E SH AVIFD Sbjct: 6 LVLIDGSGYIFRAYHGLPPLTRKSDGLPVGAVSGFCNMLYKLIKENRGEDAPSHLAVIFD 65 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFRN++Y YKA+RP PE L+PQ PL+R AT+AFGI +E+ GFEADD+I TY + Sbjct: 66 AGAHTFRNDLYDQYKAHRPPPPEDLIPQFPLIRQATRAFGIHNVELLGFEADDLICTYAH 125 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +A ++GF VTIIS+DKDLMQ+V+ + D VK + E VI+K+G+PPE +V QAL Sbjct: 126 LAVQQGFEVTIISSDKDLMQVVNDHVSMLDPVKGTHVGREQVIEKFGVPPELVVDAQALI 185 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DN+PG PGIG KTAA L+ EYG+L+ +L A IKQ KRRE + ++ + +SR+L Sbjct: 186 GDSTDNVPGAPGIGIKTAAQLILEYGSLDALLKRAHEIKQPKRREALTDFRDQILMSREL 245 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 V LR DVP P+E L+D N L +FL +EFT L RV + + Sbjct: 246 VRLRCDVPPPCPIEEFALKDPNAAELGAFLAEMEFTSLARRVGGS--------------L 291 Query: 307 NTTENKGIAIETEIDRDTTIKTSQ--FSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 T E A RD T S+ F +++ ++ TP+ L P++ Sbjct: 292 ATLETAQAA-----PRDLTAPVSKPLFGTMAQVSAP--RPATPEALLT---------PVD 335 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 +Y + + + ++ ++ + G + TD++ A S + +++S Sbjct: 336 YSAYQCVQDIEALKAYLVQCRAAGVFAVDTETDSLSATASGLVGVSLSCAPGSG------ 389 Query: 425 ETIFIDLSVHTSQDS----TG---KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 ++I LS H S D +G K E L+ LK E+ LK+G NIKYD V Sbjct: 390 --VYIPLS-HQSDDGGLALSGDEFKQIALVEALAELKPLLEDPTVLKVGQNIKYDLSVFA 446 Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 RYGI + ++D ML+SYVL+ G H + +++ L +T K++ + KS+ + Sbjct: 447 RYGIRVAPYDDTMLISYVLEGGLHGHGMDELSELHLGHTPIPFKQVAGTGKSAKSFKFVD 506 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 E+A E++++ L+LW +L+P+L ++LL VYE L++ M V+S ME+ G++ID + Sbjct: 507 LKPATEYAAEDADITLRLWHVLKPQLAQKRLLTVYETLERAMPTVLSDMELAGVRIDPQV 566 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ +S + + +E + ++G FNL+SP+QLG I F ++ P G KT TGQW T Sbjct: 567 LRLLSQDFGVRMGEIETEAHTVAGHPFNLNSPQQLGAIFFDEMALPGGKKTATGQWATDV 626 Query: 655 QDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + LE+I + G + + +L++RQ++K+K TY D+L + + +TQR+HT Y LAST Sbjct: 627 KVLEEIAEKGTHDQGQR-LARLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSYQLAST 685 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S EPNLQNIPI+T G+KIR AF++ KLISADYSQIELR+LAHI I L Sbjct: 686 TTGRLSSNEPNLQNIPIRTLEGRKIRTAFVARAGHKLISADYSQIELRLLAHIGDIGQLK 745 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F++ +DIH + A+E+FGV +E + ++RR AK INF IIYGIS F L QL I EA Sbjct: 746 KAFQDGIDIHALTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLGNQLGIDNQEA 805 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YIK YF RFPGI Y++ K V+ GYVETIFGRRIH +I++ + R ERAAI Sbjct: 806 GRYIKTYFERFPGIKAYMDAAKEQVKATGYVETIFGRRIHIPDIHAKSAGQRAFAERAAI 865 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +LE L T MLLQ+HDEL+FE PE E+ A +IV M Sbjct: 866 NAPIQGTAADIIRRAMIRMPGALEAAGLTTTMLLQVHDELIFEAPEAEVEAAKAVIVEVM 925 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976 + A LP +++ VPL+V K ++NW E + Sbjct: 926 KHAALPALDISVPLEVEAKAADNWDEAH 953 >gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597] gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597] Length = 935 Score = 790 bits (2039), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/985 (43%), Positives = 600/985 (60%), Gaps = 71/985 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNML + ++ + +H A Sbjct: 7 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLHRYVEANTGPEAPTHVA 66 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I EI+G+EADDIIA Sbjct: 67 VIFDKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRRATEAFNIACKEIEGYEADDIIA 126 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T + A + G VTIIS+DKDLMQLV + D +K +ID+E V K+G+ P+++V + Sbjct: 127 TLSCQAREAGGRVTIISSDKDLMQLVGGGVEMLDAMKNLRIDVEGVEAKFGVGPDRVVDV 186 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG LE +L A IKQ KRR+ ++E+ E L Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGTLEELLDRAGEIKQPKRRQTLIEHREQIEL 246 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L D P+ LE L + D +G L+ FL +EF L R+A D +EP Sbjct: 247 SKRLVQLDCDTPLDFTLEDLEVRDPDGETLLGFLNEMEFRTLTKRIA-----DQMGVEPP 301 Query: 303 VL-DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 L ++NT + P+ + + Sbjct: 302 ALPEVNTR--------------------------------GGDDAPETVEMP-------- 321 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST-------- 413 I+ DSY + N + W+ ++ G + T +D + + I ++T Sbjct: 322 AIDPDSYETVTNADQLAVWIGRIRERGYVAVDTETTGLDEMRADLVGICLATEPGLACYV 381 Query: 414 -LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 L K + + E +F ++D E L LK E+E LKIG N+KYD Sbjct: 382 PLGHK---AAEGEGLF------ATEDLAEGQMAEAEALEMLKPVLEDEAILKIGQNMKYD 432 Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 +L R GI + +D ML+SY L++G H + ++A ++LS+T KE+L + K+ I Sbjct: 433 AKILKRCGIDVAPCDDTMLISYALNAGLHQHGMDALADRYLSHTCIPIKELLGTGKAMIT 492 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 DK+ + +A E+++V L+LW +L+P+L +K+ VYE L++P+ V+++ME+ GI+ Sbjct: 493 FDKVPIDKATRYAAEDADVTLRLWQVLKPQLHAKKVTTVYETLERPLAPVLAKMEMHGIK 552 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 +D+D L ++S+ ++ + +LE I++L+GE+FN+ SPKQLG+ILF K+ G K KTG Sbjct: 553 VDRDTLSRMSSAFAQKMGALEAEIHELAGERFNVGSPKQLGEILFDKMGMEGGKKGKTGA 612 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T A LE + + + +L+WRQLSK+KSTY DSL HI+ T RVHT Y Sbjct: 613 YATGADVLEDLAT-LHELPARVLDWRQLSKLKSTYTDSLQTHIHPETGRVHTSYQQTGAN 671 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRLAS +PNLQNIP++++ G++IR AFI+ K L+S DYSQIELRILAHIA I L Q Sbjct: 672 TGRLASTDPNLQNIPVRSEEGRRIREAFIAEEGKVLLSLDYSQIELRILAHIADIPALKQ 731 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F+ DIH A+E+FGV +E+++P++RR AK INF +IYGIS F LA LRIPR+EA Sbjct: 732 AFDEGQDIHAATASEMFGVPMEEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQ 791 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 +I RYF RFPGI +Y+ +T F ++NGYV+T+FGRRIH EI++ K RAAIN Sbjct: 792 GFIDRYFERFPGIKDYMAETTEFGKKNGYVQTLFGRRIHTPEIDA-KGPRAGFARRAAIN 850 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 APIQG+AADI RRAMI + ++ L KMLLQ+HDELVFEV E +++ ME Sbjct: 851 APIQGTAADIIRRAMIRMPDAI--LGLPAKMLLQVHDELVFEVDEAAADEVAEVARGVME 908 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A P + + VPL V+ NW E Sbjct: 909 TAADPAVRIDVPLVVDAGQGRNWAE 933 >gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] Length = 931 Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/980 (42%), Positives = 601/980 (61%), Gaps = 72/980 (7%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNML++ L +H AVIF Sbjct: 11 HLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLYRYLGGLSGSDAPTHVAVIF 70 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 DY +FRN+IY YKANRP PE L+PQ PL R AT+AF I E++GFEADDIIAT Sbjct: 71 DYSGKSFRNQIYDKYKANRPPAPEDLVPQFPLTRDATRAFNIACYEVEGFEADDIIATLA 130 Query: 126 -YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 + + EG TIIS+DKDLMQLV + D +K ID + V +K+G+ P+++V +QA Sbjct: 131 KQVRDSEG-RCTIISSDKDLMQLVGDGVQMLDPMKNRIIDTDGVREKFGVAPDRVVDVQA 189 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS+DN+PG PGIG KTAALL+ EYG+L+++L A IKQ KRRE++++ A+ R+SR Sbjct: 190 LAGDSVDNVPGAPGIGIKTAALLINEYGDLDSLLERAGEIKQPKRRESLIDNADLIRISR 249 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-PVV 303 LV L + + L+ L ++ + L+ FL +EF + RVA DA +E PVV Sbjct: 250 DLVQLDEKMALDFTLDDLEVKPADPEALLGFLGEMEFRTMSKRVA-----DALGVEAPVV 304 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 + N +ET PI Sbjct: 305 AETEAAANP---VET------------------------------------------VPI 319 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 + D Y + + +Q+W+ + IG + T +++ ++ + I++ + Sbjct: 320 DPDKYECVSDVAALQKWIDHIRAIGHVAVDTETTSLNEMRAELVGISLCV-----EAGIA 374 Query: 424 VETIFIDLSVHTSQDSTGKNTL------TKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 I + S D G L T +L LK E+ LKIG N+KYD + Sbjct: 375 CYIPLIHKAA-ASDDLFGSADLAEGQLDTNVVLDLLKPVLEDPAVLKIGQNMKYDAKIFA 433 Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 RYG+ + F+D MLMSY ++G+ +H + S+++++L ++ K +L + KS+I DK+ Sbjct: 434 RYGVKVAPFDDTMLMSYAQNAGKHNHSMDSLSERYLGHSPISIKTLLGTGKSAITFDKVP 493 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + ++A E+++V L+LW L P L +EK+ VYER+++P++ V+++ME+ GI++D+D Sbjct: 494 VADAVKYAAEDADVTLRLWQFLGPLLHIEKVTKVYERMERPLVPVLAEMEMHGIKVDRDT 553 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L ++S ++ + LE I++ +G+ FN+ SPKQLG+ILF KL+ P G K KTG + T A Sbjct: 554 LSRMSNAFAQKMAGLEAEIHEKAGQSFNVGSPKQLGEILFDKLELPGGKKGKTGAYSTGA 613 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE + ++ + +L+WRQLSK+KSTY D+L +HIN T RVHT YS+A TGRLA Sbjct: 614 DILEDLAT-EHELPALVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYSIAGANTGRLA 672 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIPI+++ G++IR AF++ L++ DYSQIELRILAH+AKI L + F N Sbjct: 673 STDPNLQNIPIRSEEGRRIREAFVAEEGNVLLALDYSQIELRILAHVAKIDALKEAFYNG 732 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 +DIH + A+++F V +E + P +RR AK INF +IYGIS F LA LRIPR+EA +I Sbjct: 733 VDIHALTASQMFNVPLEGMDPMVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQAFINT 792 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF RFPGI Y+++T F +++ +V+T+FGR+IH +IN+ K +RAAINAPIQG Sbjct: 793 YFERFPGIRTYMDETVEFAKEHNFVQTLFGRKIHTPDINA-KGPGAGFAKRAAINAPIQG 851 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AAD+ RRAMI + +++D L KMLLQ+HDELVFEV E+ + + + ME A P Sbjct: 852 TAADVIRRAMIRMPAAIKD--LPAKMLLQVHDELVFEVAEDAVEDVTNAVRKVMENAAEP 909 Query: 955 KINLRVPLKVNIKVSNNWQE 974 I L VPL V+ NW E Sbjct: 910 AIKLTVPLTVDAGQGANWAE 929 >gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003] gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003] Length = 950 Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/989 (41%), Positives = 595/989 (60%), Gaps = 58/989 (5%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLPV A+AGF NM+++ +++++ +H A Sbjct: 5 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFTNMIFRYIEDAKGADAPTHAA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFDY + TFRNEIYP YK NRP PE L PQ PL R AT+AF + +EI+G+EADDIIA Sbjct: 65 VIFDYSSKTFRNEIYPAYKENRPPAPEDLRPQFPLTRDATRAFNLACLEIEGYEADDIIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A + G VTIIS+DKDLMQLV + D +K I E V K+G+ P +++ + Sbjct: 125 TLARQAREAGGRVTIISSDKDLMQLVGDGVVMLDAMKNIVIGPEEVEAKFGVRPNRVIDV 184 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAA L+ +YG+LE +L A IKQ KRRE ++ +A+ R+ Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAAQLIADYGDLETLLERAGEIKQPKRRETLVNFADQIRI 244 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L VP+ L+ L +++ LI+FL+A+EF L RVA + + Sbjct: 245 SKRLVTLEDHVPLDFGLDSLAVKEPEPEALIAFLEAMEFRTLTRRVAEKFGRE------- 297 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + + SD ++ PQ + + ++ P Sbjct: 298 -----------------------VPVGAPAPKSDAAARWAEGAAPQARLAPQAEAVA--P 332 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ Y +I + ++ ++ + G + T ++D ++ + +++ST + Sbjct: 333 IDTALYQRITDPAALRDFLATAQATGVLAVDTETTSLDEMQAELVGVSLSTGPGR----- 387 Query: 423 KVETIFIDLSVHTSQDST-GKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKLV 475 +I L T D G L E L+ LK E+E LKIG N+KYD + Sbjct: 388 ---ACYIPLGHTTGGDDLFGTTALAPGQMPMDEALAILKPVLEDESLLKIGQNMKYDWKI 444 Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 R+GI + F+D MLMSY + SG H + ++++++L + KE++ + K+ I DK Sbjct: 445 FARHGIRVAPFDDTMLMSYAMFSGLHGHGMDALSEEYLRHRPIPIKELIGTGKAQITFDK 504 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E++ + +LW +P+L ++ VYE L++P++ V+++ME+ G+++D Sbjct: 505 VPLDKATAYAAEDAEITYRLWAAFKPQLHRAQVTTVYETLERPLVPVLAEMEMAGVKVDP 564 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L ++S ++ + LEE I L+G+ FN+ SPKQLG+ILF KL P G K KTG + T Sbjct: 565 TVLARMSNVFAQRMAGLEEEIQALAGQSFNVGSPKQLGEILFDKLGVPGGEKGKTGAYAT 624 Query: 653 TAQDLEQINCGDN-----PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 A LE I ++ + +L+WRQ++K+KSTY D+L H+N T RVHT YS+A Sbjct: 625 GADVLEDITTMEDHKQAADLAAKVLDWRQIAKLKSTYTDALQTHVNPDTGRVHTSYSIAG 684 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 TGRLAS +PNLQNIP+++D G++IR AF++ P +++S DYSQIELRILAH+A + + Sbjct: 685 ANTGRLASTDPNLQNIPVRSDEGRRIREAFVATPGHRIVSLDYSQIELRILAHVANLPEM 744 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F +DIH M A+E+FGV +E + P +RR AK INF +IYGIS F LA LRIPRSE Sbjct: 745 KAAFARGIDIHAMTASEMFGVPVEGMDPMVRRRAKAINFGVIYGISGFGLARNLRIPRSE 804 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A +I RYF RFPGI Y+++T F + NG+V+T+FGR+IH EIN+ K +RAA Sbjct: 805 AQGFIDRYFERFPGIRAYMDETVAFAKANGFVQTLFGRKIHTPEINA-KGPGAGFAKRAA 863 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQG+AADI RRAMI + ++ L KMLLQ+HDEL+FEV E + Sbjct: 864 INAPIQGAAADIIRRAMIRMPAAIA--HLPAKMLLQVHDELIFEVAESAVDPLIATARAV 921 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976 ME A P + L VPL V+ +W E + Sbjct: 922 MEGAADPAVRLSVPLVVDAGQGASWAEAH 950 >gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255] gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255] Length = 932 Score = 784 bits (2025), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/983 (41%), Positives = 602/983 (61%), Gaps = 68/983 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS FI+RA++A P L+RK DGLPV A++GFCNML+K++++ + +H Sbjct: 5 KGHHLHLIDGSGFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLFKIIEDQKGSDAPTHLV 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V+FD TFR++IYP+YK NRP PE L+PQ PL R AT+AFG+ IE +GFEADDI+A Sbjct: 65 VVFDAKGKTFRSDIYPEYKMNRPPAPEDLIPQFPLTRDATRAFGLACIEQEGFEADDIMA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A + G VTI+S+DKDLMQLV +YD +K ++I E V +K+G+ P +++ + Sbjct: 125 TLAVQAREAGGQVTIVSSDKDLMQLVGNGVEMYDAMKNKRIGPEQVEEKFGVAPNRVIDV 184 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 Q+L GDS+DN+PG PGIG KTAALL+ EYG+L+++L AS IKQ KRRE ++E A+ R Sbjct: 185 QSLAGDSVDNVPGAPGIGVKTAALLINEYGDLDSLLERASEIKQPKRRETLIENADQIRT 244 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 SR LV L+TD+ + + ++ + ++ FL +EF + R+A A I Sbjct: 245 SRDLVTLKTDMEMDCDFDDFQVQAPDPEVVLKFLAEMEFRTMSARIANKLGVSAPEI--- 301 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + +IN+E +++ + Sbjct: 302 ----------------------------------SSDRINNE--------DQITEAESIS 319 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 IN + Y I N D+ +WV K+ G + T ++ + I +S Sbjct: 320 INTEKYELIDNINDLNRWVTKIYQRGYVAVDTETTGLNDMIVDLVGICLSVEIG------ 373 Query: 423 KVETIFIDLSVHTS--QDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKL 474 E +I + HT+ D G +L E L L+ ++ +KIG N+KYD Sbjct: 374 --EACYIPVG-HTNGENDLFGGASLCNGQINLDEALEILRPVLQDPSIIKIGQNVKYDTK 430 Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531 + RY +++ +D ML+SY ++ G+ +H + +++++L++ + K +L S KS+I D Sbjct: 431 IFARYDVNLAPVDDTMLLSYAINGGKHNHGMDYLSERYLNHKPISIKTLLGSGKSAITFD 490 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 K+S + +A E++++ L+LW L +P L + +YE L++P+I V+++ME+ GI++D Sbjct: 491 KVSINDAVNYAAEDADITLRLWKLFKPMLHESSVTKIYETLERPLIPVLAKMEMNGIKVD 550 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 ++ L ++S ++++ LE IY+L+G+ FN+ SPKQLG+ILF KL+ P G K KTG + Sbjct: 551 RNTLSRMSNNFAQSMSGLEAEIYNLAGQTFNVGSPKQLGEILFDKLELPGGKKGKTGAYG 610 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T LE + + + +L+WRQ+SK+KSTY D+L HIN T RVHT Y ++ TG Sbjct: 611 TGVDVLEDLASEGHELPVKVLDWRQMSKLKSTYTDALQGHINPNTGRVHTSYVISGASTG 670 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+++ G+KIR AFI+ L+S DYSQIELRILAHIAKI L Q F Sbjct: 671 RLSSTDPNLQNIPIRSEAGRKIREAFIAEEGNVLLSLDYSQIELRILAHIAKIDTLKQAF 730 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIH + A+++F V +E + P +RR AK INF +IYGIS F LA LRIPR EA + Sbjct: 731 HEGQDIHALTASQMFNVPLENMDPMVRRQAKAINFGVIYGISGFGLARNLRIPRKEAQSF 790 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I YF RFPGI Y+++T +F ++NGYVET+FGR+IH EIN+ K +RAAINAP Sbjct: 791 IDTYFERFPGIRTYMDETVSFAKENGYVETLFGRKIHTSEINA-KGPQAGFAKRAAINAP 849 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AAD+ RRAM+ + ++ L KMLLQ+HDEL+FEV ++ + ++++ + MEKA Sbjct: 850 IQGTAADVIRRAMVQMPNAIS--HLPAKMLLQVHDELIFEVNKDALNETTEVVRNIMEKA 907 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 P + L VPL V+ NNW + Sbjct: 908 SEPVVKLDVPLVVDAGFGNNWAD 930 >gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3] gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3] Length = 971 Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/984 (41%), Positives = 585/984 (59%), Gaps = 60/984 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+++D S++I+RA++A P L+RK DGLPV A+ G+CNMLWKLL++ + +H IFD Sbjct: 26 LWMIDASAYIFRAYHALPPLTRKSDGLPVGAVQGYCNMLWKLLKDMKGADGPTHLVAIFD 85 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFRN +Y YKA+RP PE L+PQ PLVR AT AFG+ +E+ G+EADD+IATY Sbjct: 86 HSDKTFRNTLYDQYKAHRPPAPEDLVPQFPLVREATAAFGVHCVELPGYEADDLIATYAC 145 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A G I+S+DKDLMQL+ ++D +K+ ++ V +K+G+ PEKM+ LQAL Sbjct: 146 KARDAGGEAVIVSSDKDLMQLIGGGVVMWDPMKDRRLAEPEVFEKFGVGPEKMIDLQALI 205 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DN+PG PGIG KTAA LL EYG+L+ +L A IKQ KRRE ++ +A+ RLSR+L Sbjct: 206 GDSVDNVPGAPGIGPKTAAQLLDEYGDLDALLARAGEIKQPKRRETLINFADQIRLSREL 265 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 V L D P P+E + D + L +FL +EF L RV D A Sbjct: 266 VRLTCDAPAPEPIEDFAVRDPDPETLSAFLDKMEFRSLQRRVG---DGRA---------- 312 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 +E A + + + T ++ + + ++ ++F + + Sbjct: 313 GPSETSAFAPKRAPNLSAPVATPRYGQVVEGPAE-------AQIF------------DLE 353 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + + + +W+ + GS F T ++ A H+ ++++ E Sbjct: 354 AYECVQTEEALDRWIARAVEAGSVGFDTETSSLSATHAGLCGVSLAVGPN--------EA 405 Query: 427 IFIDLSVHTSQDSTGKNTL---------------TKEILSYLKKFFENEHFLKIGHNIKY 471 +I L+ H + G+ L + L+ LK EN LK+ N KY Sbjct: 406 CYIPLT-HEHEPQAGEGGLFGVPGEAREPIQQLDKAKALAKLKVLLENPSVLKVLQNAKY 464 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 D V+ R GI + ++D ML+SYVL+ G H + +A+ L + K + + KS Sbjct: 465 DLAVMARRGIRVAPYDDTMLISYVLEGGLHGHGMDELARLHLGHDPVPFKSVAGTGKSQK 524 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 ++ ++A E+++V L+LW LL+P+L E L VYE L++P+ V+++ME G+ Sbjct: 525 SFRHVALKPATQYAAEDADVTLRLWRLLKPRLAREGLSTVYETLERPLPAVLAEMETAGV 584 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +ID D LK++S+E + LE ++++G FN+ SP+Q+G+ILF +L P G KT +G Sbjct: 585 RIDPDRLKRLSSEFGLRMAELEAQAHEIAGRPFNIGSPRQIGEILFGELNLPGGKKTASG 644 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T A LE + + + + +L+WRQLSK+K TY D+L + T RVHT Y LA+ Sbjct: 645 QWGTDASVLEDL-AATHALPRVLLDWRQLSKLKGTYTDALTAAADPATDRVHTSYQLAAA 703 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRLAS +PNLQNIPI+T+ G++IR+AFI+ P LISADYSQIELR+LAHI I L Sbjct: 704 TTGRLASSDPNLQNIPIRTETGREIRQAFIAAPGHLLISADYSQIELRLLAHIGDIPELK 763 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F+ LDIH A+E+FGV +E + + RR AK INF I+YGIS F LA QL I + EA Sbjct: 764 RAFKAGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGIVYGISAFGLAAQLGIDQGEA 823 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YIK YF RFPGI Y++KT+ VRQ G+V T+FGRRIH I+S + R ERAAI Sbjct: 824 GAYIKTYFDRFPGIRTYMDKTRAEVRQAGFVSTVFGRRIHIPAIHSKSGAERQFGERAAI 883 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L + L T+MLLQ+HDELVFE PE E A +I M Sbjct: 884 NAPIQGAAADIIRRAMIRMPTALAEAGLTTRMLLQVHDELVFETPEAEADRAITVIKRVM 943 Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972 E A P + L VPL V+ + + NW Sbjct: 944 ETASDPAVALTVPLVVDARAAPNW 967 >gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1] gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1] Length = 944 Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/981 (42%), Positives = 587/981 (59%), Gaps = 64/981 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-SHFAVIF 65 L+LVDGS FI+RAF+A P L+RK DGLPV A++GFCNM+WKLL + ++ A +H AV+F Sbjct: 17 LYLVDGSGFIFRAFHALPPLTRKTDGLPVGAVSGFCNMIWKLLVEMKTQADAPTHLAVVF 76 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D+ TFRN++Y YKA+RP PE L+PQ PLVR AT+AFG+P +E+ G+EADD+IA Y Sbjct: 77 DHSEQTFRNKLYDQYKAHRPPPPEDLVPQFPLVREATKAFGVPCLELPGYEADDLIAAYA 136 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 G VTI+S+DKDLMQLV P + DT+K +I IE VI+K+G+ P+K+V +QAL Sbjct: 137 CKVRDMGGEVTIVSSDKDLMQLVGPRVFMLDTMKNARIGIEQVIEKFGVTPDKVVDVQAL 196 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS+DN+PG PGIG KTA+ L+ EYG+L+ +L A+ IKQ KRR+ ++EYA+ RLSR+ Sbjct: 197 CGDSVDNVPGAPGIGIKTASALINEYGDLDTLLARATEIKQPKRRDTLIEYADQIRLSRE 256 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LV L D P+ PL+ L ++D + L FL+ +EF L RV D A + D Sbjct: 257 LVRLDCDTPLPSPLDELAVDDPDPAVLSEFLERMEFRTLARRVG---DGKAGSAGQAAAD 313 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 E + +K + I+ Sbjct: 314 TPRPETRAP-----------------------------------------EKPNHGKIDV 332 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 +Y + + + W+ K G +F TD + + + ++++ E Sbjct: 333 TAYACVRDLPALDAWIAKAYARGIVAFDTETDALSSATAGLCGVSLAVAPG--------E 384 Query: 426 TIFIDLSVHTSQDS---TGKNTLTK----EILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 +I L H + LT+ + ++ LK E+ LK+ N KYD VL R Sbjct: 385 ACYIPLG-HCEAEGLQLEAAADLTQIPLEQAIARLKPLLEDPSVLKVAQNAKYDIAVLSR 443 Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD 535 YGI + +D ML+SYVL++G +H + +++ L + K + + K+ + Sbjct: 444 YGIEVGPIDDTMLISYVLEAGLHNHGMDELSKLGLDHEPIAFKSVAGTGKAQKSFKYVGL 503 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 S+ +A E+++V L+LW L+P+L E L VYE L++PM V++ ME G ++D + L Sbjct: 504 SEATCYAAEDADVTLRLWEHLKPRLAHEGLATVYETLERPMPKVLADMECAGAKVDAERL 563 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 +Q+S E + + LE + L+G FNL SPKQ+G++LF ++ SG T TG + T A Sbjct: 564 RQLSNEFGQRMAELEAEAHRLAGRPFNLGSPKQIGEVLFKEMGLASGRVTATGAFSTDAS 623 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE + + + + +L+WRQLSK+K TY D+L I+++T RVHT +SLAST TGRL+S Sbjct: 624 MLEDLAAQGHELPRILLDWRQLSKLKGTYTDALVAAISEQTGRVHTSFSLASTTTGRLSS 683 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNL NIPI+T+ G+KIRRAF++ P K LISADYSQIELR+LAHI I L + F L Sbjct: 684 SDPNLMNIPIRTEEGRKIRRAFVAEPGKVLISADYSQIELRLLAHIGDIPQLKRAFREGL 743 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH M A+E+FGV +E + + RR AK INF IIYGIS F LA QL IP+ EA YIK Y Sbjct: 744 DIHAMTASEMFGVPVEGMPSETRRRAKAINFGIIYGISAFGLANQLGIPQDEAGAYIKTY 803 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F RFPGI Y+++TK R G+V TIFGR+++ + S + R +RAAINAPIQGS Sbjct: 804 FERFPGIRAYMDRTKQAARSQGFVHTIFGRKVNIPAVKSKSQAERAFGDRAAINAPIQGS 863 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD+ RRAMI + +L+ L +MLLQ+HDELVFE PE E +I MEKA P Sbjct: 864 AADVMRRAMIRMPGALKAEGLTARMLLQVHDELVFEAPEAEAEAVIRIAKAVMEKAAEPA 923 Query: 956 INLRVPLKVNIKVSNNWQEEN 976 + + VPL V + + NW + + Sbjct: 924 VAISVPLVVEARAAPNWDDAH 944 >gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] Length = 929 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/975 (41%), Positives = 595/975 (61%), Gaps = 78/975 (8%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 +++HL+L+D S++++RAF+A P L+R DGLPV A+AGFCNML+KLL++ + + +HFA Sbjct: 8 QDSHLYLIDASAYVFRAFHALPPLTRASDGLPVGAVAGFCNMLFKLLEDLKGKERPTHFA 67 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 IFD TFRNEIYP YKANR PE L+PQ PLVR A AF AIE GFEADD+IA Sbjct: 68 CIFDASGDTFRNEIYPLYKANRSDPPEELVPQFPLVRRAAVAFAAHAIEQTGFEADDLIA 127 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 TY +AE +G VTI+S+DKDLMQL++ + D +K + + + VI+K+G+ PE +V + Sbjct: 128 TYARLAEAKGARVTIVSSDKDLMQLITDKVLMLDPMKNKLLGRDDVIEKFGVGPEGVVDV 187 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 Q+L+GDS+DN+PG PGIG KTAA LL EYG +E +L A IKQ KRRE ++ +A+ R+ Sbjct: 188 QSLSGDSVDNVPGAPGIGIKTAAQLLGEYGTVEALLERAGEIKQPKRRETLINFADQVRV 247 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L+ DVP+ +P+E L ++D + LI FL+ +EF + RV + + Sbjct: 248 SKQLVQLKEDVPVVLPVEELAVQDPDPKVLIGFLEEMEFRTITRRVREQMELEG------ 301 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 AIE S ++ + D Sbjct: 302 ------------AIEAPAPEAQPFDVSAYACIRD-------------------------- 323 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 K ++ WV + G + TD++D+ + ++++ Sbjct: 324 -----------LKTLEDWVARATAQGHVAVDTETDSLDSVSGGLVGVSLALAPG------ 366 Query: 423 KVETIFIDLSVHTSQDSTGKNTL----------TKEILSYLKKFFENEHFLKIGHNIKYD 472 E +I L+ H ++ G + E L LK E+ LKIG NIKYD Sbjct: 367 --EACYIPLA-HVDPEAKGDGDMFGADPPRQIKMAEALKVLKPMLEDPAVLKIGQNIKYD 423 Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 V ++ I + +D ML+S+ L++G H + +++++L + T K++ + K+ Sbjct: 424 LSVFAQHKIHVHPIDDTMLISFALNAGIHGHGMDDLSERYLGHKPITFKDVAGTGKAQKS 483 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 +++ + E+A E+++V L+LW L+P+L E++ VYE LD+P+ V+++ME G++ Sbjct: 484 FAQVALDKATEYAAEDADVTLRLWQALKPRLRTEQVTAVYETLDRPLGPVLAEMEQAGVK 543 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 +D+D+L ++SA+ ++ + +LE ++ +G FN+ SPKQLG+ILF ++ P G KTKTG Sbjct: 544 VDRDMLSRLSADFNQRMAALEAEAHEQAGRSFNIGSPKQLGEILFDEMNLPGGKKTKTGA 603 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 W T LE + + + + I++WR LSK++STY ++L INK+T RVHT Y +A Sbjct: 604 WVTDGDVLEGLAADGHALPRTIVDWRMLSKLRSTYTEALQAAINKKTGRVHTSYMMAGAQ 663 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIP++T+ G+KIR+AFI+ L+SADYSQIELRILAH+A I L Q Sbjct: 664 TGRLSSTDPNLQNIPVRTEEGRKIRQAFIAEEGNVLVSADYSQIELRILAHMADIPALKQ 723 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F++ LDIH M A+E+FGV IE + P +RR AK INF IIYGIS F L QL IP EA Sbjct: 724 AFKDGLDIHAMTASEMFGVPIEGMDPMVRRQAKAINFGIIYGISGFGLGRQLGIPSGEAN 783 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 YIK YF RFPGI +Y+++TK F R G+V+T FGR+IH +I S K R+ ER AIN Sbjct: 784 QYIKTYFERFPGIRQYMDETKEFARATGFVKTAFGRKIHLPDIKS-KGPARSFAERQAIN 842 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 APIQGSAADI +RAMI + ++L + L +MLLQ+HDELVFE PE+E +++ +M Sbjct: 843 APIQGSAADIIKRAMIRMPEALAEAGLKAQMLLQVHDELVFECPEKEAEKLIKLVQKTMA 902 Query: 950 KACLPKINLRVPLKV 964 A P + L VPL V Sbjct: 903 AADGPSLRLSVPLVV 917 >gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510] gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510] Length = 972 Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/990 (41%), Positives = 606/990 (61%), Gaps = 69/990 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+LVDGS FI+RAF+A P+L+R DG PVNA+ GF NML KLL +++ E++A V+FD Sbjct: 28 LYLVDGSGFIFRAFHALPMLTRP-DGTPVNAVLGFSNMLLKLLADAKAEAVA----VVFD 82 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + FRNE YPDYKA+RP+ PE L PQ L+R AT+AF +P +E++G+EADD+IATY Sbjct: 83 SKRLNFRNEFYPDYKAHRPEPPEELKPQFALIREATEAFCLPCLELEGYEADDLIATYAR 142 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +A++ G VTI+S+DKDLMQLV P ++D +K + I + V +K+G+PPEK+V +QAL Sbjct: 143 LAQEAGRPVTIVSSDKDLMQLVRPGIGMFDPMKNKAIGPDEVFEKFGVPPEKVVDVQALA 202 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DN+PG+PGIG KTAA L+ EYG+LE +L NA +IKQ RR+ ++E+AE AR+SR+L Sbjct: 203 GDSVDNVPGVPGIGVKTAAQLITEYGDLEALLANADKIKQPARRQKLIEFAEQARISRRL 262 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 V L P PL+ L + + + +LI FLKA F +++RV Sbjct: 263 VRLDDRAPPPKPLDELRVREPDHRKLIDFLKAQGFRSIVSRV------------------ 304 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 E E+ +D I S+ TS S P+ + + +P+ Sbjct: 305 ----------EMEMQKDGRIADGAGSAPVVTTSATPS-APPENVSTDGTADTQDHPVRKT 353 Query: 367 -------SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 Y + + +++WV++ G + TD++ + + +++ST Sbjct: 354 VLHVPEVRYELVQDADALRRWVERARETGRLAVDTETDSLTPATATLVGVSLSTEPGI-- 411 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTL------------TKEILSYLKKFFENEHFLKIGH 467 +I L+ H ++ S L E ++ LK E+ LKIGH Sbjct: 412 ------ACYIPLA-HKAEGSAAAGQLDFDAPPPPAQIPAAEAMAILKDVLEDPSVLKIGH 464 Query: 468 NIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524 N K+D + R GI++ +D ML+SYVL+ G H + +A+ L+YT KE+ + Sbjct: 465 NFKFDHQLFGRNGITVSPVDDSMLISYVLEGGSHGHGMDELAELHLAYTPIPFKEVCGTG 524 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 K+ I D++ + +A E++++ L+LW LL+P+L+ +++ VYE LD+P++ VV+ ME Sbjct: 525 KNQITFDRVPLDKALAYAAEDADITLRLWTLLKPRLVDSRMVTVYETLDRPLVPVVANME 584 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 G++IDQ L ++S ++S L +E+ ++ L+G+ FN+ SPKQLG+ILF LK +G K Sbjct: 585 REGVRIDQQALARLSQDLSVRLAEIEKEVHALAGQSFNIGSPKQLGEILFDTLKLGTGKK 644 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 KTG + T + LE++ + I + +L+WRQL+K+KSTY D+L I+ T RVHT ++ Sbjct: 645 GKTGAYSTDSSVLEELAEQGHTIAQRVLDWRQLAKLKSTYTDALQEKISPVTGRVHTAFA 704 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 LA+T TGRL+S +PNLQNIP++T+ G+KIRRAF++ P KL+S DYSQIELR++A +A I Sbjct: 705 LAATNTGRLSSTDPNLQNIPVRTEEGRKIRRAFVASPGHKLLSVDYSQIELRLVAEMADI 764 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L F + LDIH AA++FG+ + +++P +RR AK INF IIYGIS F L QL I Sbjct: 765 QALKDAFRDGLDIHAATAAQVFGIPLAQMTPDIRRKAKAINFGIIYGISGFGLGRQLGIA 824 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 EA +IK Y RF + ++E TK F RQ+GYV T+FGRR + I ++ R E Sbjct: 825 PGEANAFIKTYLERFHELKVWMEATKAFARQHGYVATLFGRRCYMPGIQDKNAARRAFAE 884 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R AINAPIQG+AADI +RAM + +L +MLLQ+HDEL+FEVPE E+ A++I+ Sbjct: 885 RQAINAPIQGTAADIMKRAMNRMPDALAAAGSNARMLLQVHDELLFEVPEAEVDDAARIV 944 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A +L VPL + +NW+E Sbjct: 945 REVMEGAA----HLGVPLVAEAGIGDNWEE 970 >gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] Length = 964 Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/988 (41%), Positives = 590/988 (59%), Gaps = 63/988 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+++D S++I+RA++A P L+RK DGLPV A+ G+CNMLWKLL++ + E +H +FD Sbjct: 22 LWMIDASAYIFRAYHALPPLTRKSDGLPVGAVQGYCNMLWKLLKDMKGEDGPTHLVAVFD 81 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFRN++Y YKA+RP PE L+PQ PLVR AT+AFG+ +E+ G+EADD+IATY Sbjct: 82 HSEKTFRNDLYDQYKAHRPPAPEDLVPQFPLVREATKAFGVHCVEMAGYEADDLIATYAC 141 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A G I+S+DKDLMQL+ +YD +K+ +++ E V +K+G+ P+K+V +QAL Sbjct: 142 QARDAGGEAVIVSSDKDLMQLIGDGVVMYDPMKDRRLEEEAVFEKFGVTPDKVVEVQALI 201 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DN+PG PGIG KTAA L+ EYG+L+ +L A IKQ KRRE ++ +A+ RLSR+L Sbjct: 202 GDSVDNVPGAPGIGPKTAAQLIHEYGDLDTLLARAGEIKQPKRRETLINFADQIRLSREL 261 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 V L D PI P++ ++ D + L +FL+ +EF L RV Sbjct: 262 VKLTCDAPIPEPIDDFLIRDPDPETLSAFLETMEFKSLARRVG----------------- 304 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 D + S+ + Q S + TP+ E + I+ D Sbjct: 305 ----------------DGKAPQKEGSAFTRQPSAPVA--TPRYGQTEVAAPTETHAIDRD 346 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y + +D+ +W+ + G F TD + + H+ ++++ E Sbjct: 347 RYECVQTLEDLDRWIARARAAGVVGFDTETDALSSTHAGLCGVSLAVGPN--------EA 398 Query: 427 IFIDLSVHTSQDSTGKNTLTKE---------------ILSYLKKFFENEHFLKIGHNIKY 471 +I L+ H + + + L+ LK E+ LK+G NIKY Sbjct: 399 CYIPLT-HEHEPTGDGGLDFGDGGDARPPLQQIDKPTALARLKDLLEDPSVLKVGQNIKY 457 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 D V+ R G+ + +D+ML+SYVL+ G H + +A+ L + K + + KS Sbjct: 458 DLAVMARRGVRVAPIDDVMLISYVLEGGLHGHGMDELARLHLGHEPIPFKSVAGTGKSQK 517 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + +A E+++V L+L LL+P+L E L +VYE L++ M V++ ME G+ Sbjct: 518 SFKHVELKSAVCYAAEDADVTLRLHRLLKPRLAAEGLSNVYETLERGMPAVLADMERAGV 577 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ++D D L+ +S+ + + LEE + L+G FN+ SP+Q+G+ILF ++ P G KT +G Sbjct: 578 RVDPDRLRSLSSTFGQRMAELEEEAHKLAGRPFNVGSPRQIGEILFGEMNLPGGKKTASG 637 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 QW T A LE + +P+ + IL+WRQLSK+K TY D+L ++ +T RVHT Y LA+ Sbjct: 638 QWGTDASVLEDL-AQSHPLPRTILDWRQLSKLKGTYTDALVAAMDPQTNRVHTSYQLAAA 696 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRLAS +PNLQNIPI+T+ G++IR+AFI+ P LISADYSQIELR+LAHI I L Sbjct: 697 TTGRLASSDPNLQNIPIRTETGRQIRQAFIASPGHVLISADYSQIELRLLAHIGDIPELK 756 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F++ LDIH A+E+FGV +E + + RR AK INF IIYGIS F LA QL I + EA Sbjct: 757 RAFKSGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGIIYGISAFGLAAQLGIDQGEA 816 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YIK YF RFPGI +Y+++TK V++ G+V T+FGRRIH I+S + R ERAAI Sbjct: 817 GAYIKTYFERFPGIRDYMDRTKALVKEQGFVTTVFGRRIHIPAIHSKSGAERQFGERAAI 876 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI RRAMI + +L + L T+MLLQ+HDELVFE PE E A +I M Sbjct: 877 NAPIQGAAADIIRRAMIRMPGALAEAGLQTRMLLQVHDELVFEAPEAEAERAVAVIRRIM 936 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976 E A LP + L VPL V K + NW + + Sbjct: 937 EGAALPAVALSVPLDVEAKAAGNWDDAH 964 >gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Magnetospirillum magnetotacticum MS-1] Length = 926 Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/987 (41%), Positives = 591/987 (59%), Gaps = 80/987 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M H+ L+DGS FI+RAF+ P ++R DG PVNA+ GF ML KLL +S+ + H Sbjct: 1 MTAPRHVTLIDGSGFIFRAFHGLPPMTRP-DGTPVNAVYGFTTMLMKLLADSQSD----H 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AVIFD TFR+EIYP+YKA+RP P+ L+PQ PLVR AT+AF +PAIE++GFEADD+ Sbjct: 56 VAVIFDSSRKTFRSEIYPEYKAHRPPAPDELVPQFPLVREATRAFDLPAIELEGFEADDL 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IATY +A + G +VTI+S+DKDLMQLV P +YD +K I V +K+G+ P+K+V Sbjct: 116 IATYARLAVEAGASVTIVSSDKDLMQLVGPGVDMYDPMKNRAIGEAEVREKFGVAPDKVV 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +QAL GDS DN+PG+PGIG KTAA L++EYG+L+ +L AS IKQ KRRE+++E+AE A Sbjct: 176 DVQALCGDSSDNVPGVPGIGVKTAAQLIEEYGDLDTLLARASEIKQPKRRESLIEHAELA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 R+SR+LV LRTD P+ +PL L ++ +L +F A F L+ R+ A Sbjct: 236 RISRQLVRLRTDAPVPVPLADLDVKPPAPEKLAAFCAAQGFRSLMGRLNAKIPTTAPTAT 295 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 ++D + E + + E D Sbjct: 296 RAIVDTASAEAPSLPPKVESD--------------------------------------- 316 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 Y + + + +WV + G F T +D +K + ++++ + Sbjct: 317 -------YELVTDLAALDRWVAQASKAGLVGFDTETTGLDPLRAKLVGVSLALAPGR--- 366 Query: 421 SFKVETIFIDLSVHTSQDSTG-----------KNTLTKEILSYLKKFFENEHFLKIGHNI 469 +I + +H+S ++ G K +IL+ LK + LK+GHNI Sbjct: 367 -----ACYIPV-MHSSGEAQGDLLGGPSADAPKLIPAADILARLKPLLADPAVLKVGHNI 420 Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526 KYD V+ G++++ F+D ML+SYVLD H + + L + + E+ S ++ Sbjct: 421 KYDMQVMAGLGLAIQSFDDTMLLSYVLDGASHGHGLDELCLLHLGHRNISFAEVCGSGRN 480 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 + D++ + +A E++++ L+L LL+P+L++E+++ VYE L++P++ V++ ME Sbjct: 481 QVTFDRVPLDKACAYAAEDADMTLRLHGLLKPRLLLERMVSVYETLERPLVPVIAAMERD 540 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLS-GEKFNLSSPKQLGDILFTKLKFPSGAKT 645 GI++D+ L +S + + L LE + L+ GE FNL SP+QLG +LF L P G KT Sbjct: 541 GIKVDRPQLMALSEDFGRRLTELETEVVALNNGEAFNLGSPQQLGKVLFETLNLPGGKKT 600 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTGQW T A LE + +P+ +L+WRQLSK+K TY D+L IN T RVHT Y+L Sbjct: 601 KTGQWATGADVLEDL-AHLHPLPARLLDWRQLSKLKGTYTDALVAQINPATGRVHTSYAL 659 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A+T TGRL+S +PNLQNIPI+T+ G+KIR AF++ P K+LISADYSQIELR++AH+A+I Sbjct: 660 AATTTGRLSSSDPNLQNIPIRTEEGRKIRHAFVAEPGKRLISADYSQIELRLVAHVAEIE 719 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F + DIH + A+++FGV ++ + +RR AK INF IIYGISPF LA QL IP+ Sbjct: 720 GLRDAFADGADIHAITASQVFGVPLDGMDSALRRRAKAINFGIIYGISPFGLAAQLGIPQ 779 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA YI+ YF R+P I ++E+TK R+ G+V T+FGR++ I ++R ER Sbjct: 780 GEAKAYIEAYFARYPEIRTFMERTKEEAREKGFVTTLFGRKVFTPGIKDKNGAMRAFAER 839 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AAIN PIQG AADI +RAMI + +L L ++LLQ+HDELV E PE+E +++ Sbjct: 840 AAINGPIQGGAADIIKRAMIRLPAALVAEGLKARLLLQVHDELVLEAPEDETEATVRVVK 899 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972 ME A L VPL V ++++W Sbjct: 900 RVMEAAA----TLSVPLLVEAGIADSW 922 >gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814] gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814] Length = 956 Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1003 (41%), Positives = 596/1003 (59%), Gaps = 84/1003 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRK---ESI 57 + +++HL+LVD S +I+RAF+A P L+RK DGLPV A++GFCNML+KLL S++ Sbjct: 7 LNEDSHLYLVDASGYIFRAFHALPPLTRKSDGLPVGAVSGFCNMLYKLLAESKEVTGNGK 66 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 A+HFA IFD + TFRN++ P YKA RP PE L PQ PLVR A AFG PA+E+ +EA Sbjct: 67 ATHFACIFDASSKTFRNDLDPRYKAQRPPTPEDLAPQFPLVRRAAIAFGTPAVELDNYEA 126 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IA Y IAE++G VTIIS+DKDLMQLV+ + DT+K+ + E V+ K+G+ P+ Sbjct: 127 DDLIAAYARIAEEKGAKVTIISSDKDLMQLVTDKVSMMDTMKDRHLSFEAVMDKFGVAPD 186 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL-INASRIKQKK-------- 228 ++ +QAL GDS+DN+PG+PGIG KTAA L+ E+G+LE +L ++ + KK Sbjct: 187 RVTHVQALAGDSVDNVPGVPGIGLKTAAQLINEFGDLEALLKFSSEHVPDKKNKAHELLT 246 Query: 229 --RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 R EN++E+A+ AR+S KLV L P+ + +E + + +L+ FL +EF + Sbjct: 247 FKRHENLVEFADDARISFKLVTLDDHTPVPVAIEEFGVCEPELEQLVPFLDEMEFRTITR 306 Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346 RV A EPV T + TI ++ +++ D + Sbjct: 307 RVVQALGDGA---EPVA--------------TPASGEATIPVTETNNVFDTSQ------- 342 Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406 YT ++ D+ +W+++ + +G TD +DA + Sbjct: 343 ---------------------YTTLIKPDDLVEWMRRAQAVGVIGVDTETDGLDAIGANL 381 Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQ-----DSTGKNTLTKEILSYLKKFFENEH 461 + ++++ L D +I L HT D + K L LK E+ Sbjct: 382 VGVSLA-LGPND-------ACYIPLG-HTGDGDLLGDGAPEQMDMKLALGILKPMLEDPT 432 Query: 462 FLKIGHNIKYDKLVLHRYG-------ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS 514 LK+G N KYD V HR G I +D ML+S L++G+ +H + +++ Sbjct: 433 ILKVGQNFKYDVNVFHRAGEKFLDEPIIPYPIDDTMLLSAALEAGQHNHGMDVLSELHFD 492 Query: 515 YTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 + KE+ + K I DK+ + ++A E+++V L+LW LL+P+L E + +YE Sbjct: 493 HKPIPFKEVAGTGKKQITFDKVPVPEATKYAAEDADVTLRLWALLKPRLSAEGMATLYET 552 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 +++PM+ VV+QME GI ++++ L ++S + ++ + E Y+L+G +FN+ SPKQLG+ Sbjct: 553 IERPMVPVVAQMERAGIFVERETLSRLSGDFAQRMAQYEAEAYELAGREFNMGSPKQLGE 612 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF +++ P G KTKTG W T A LE + + + K +L WR LSK+KSTY D+L Sbjct: 613 ILFGEMELPGGKKTKTGAWATGADALEDLAAEGHELPKILLGWRSLSKLKSTYTDALGEC 672 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 IN T RVHT ++L TGRL+S +PNLQNIPI+T+ G+KIR AF++ LI+ADYS Sbjct: 673 INAETGRVHTSFNLVGAQTGRLSSSDPNLQNIPIRTEEGRKIRAAFVAQEGNVLIAADYS 732 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELR+LAHI I L F N LDIH M A+E+FGV IE + P +RR AK INF IIYG Sbjct: 733 QIELRLLAHIGNIDTLKDAFNNDLDIHAMTASEMFGVPIEGMDPMIRRKAKAINFGIIYG 792 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 IS F LA QL IPR EA++YIK Y +FPGI +Y+++ K F R+ GYVET FGRRI Sbjct: 793 ISAFGLARQLGIPRGEASEYIKAYNAKFPGILKYMDEMKAFAREKGYVETAFGRRIWMKG 852 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 IN K R ER AINAP+QGSAADI +RAM+ + +LE L KMLLQ+HDEL+FE Sbjct: 853 ING-KGPERGFAERQAINAPLQGSAADIIKRAMVKMPAALEKSGLQAKMLLQVHDELIFE 911 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 P+ E +++ ME A P ++L VPL V + +++W E Sbjct: 912 APKAEAEKTIKLVKKIMETATFPVMDLSVPLLVEAEAAHSWNE 954 >gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15] gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15] Length = 967 Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/980 (42%), Positives = 593/980 (60%), Gaps = 50/980 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LFLVDGS++++RA++A P L+RK DGLPV A+ GFCNMLWKLL++ + ++ +H AVI+D Sbjct: 28 LFLVDGSAYLFRAYHALPPLTRKSDGLPVGAVQGFCNMLWKLLRDMQGDT-PTHLAVIWD 86 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFRN +Y YKA+RP PE L+PQ PLVR AT AFG+PAIE+ G+EADD+IA Y Sbjct: 87 HSEKTFRNALYDQYKAHRPPPPEDLIPQFPLVREATLAFGVPAIELPGYEADDLIAAYAC 146 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A G I+S+DKDLMQLV +YD +K +I+ E V +K+G+ PEK+V +QAL Sbjct: 147 KARDIGGEAIIVSSDKDLMQLVGDGVSMYDPMKGVRIEREQVFEKFGVYPEKVVDVQALC 206 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DN+PG PGIG KTAA L+ EYG+L+ +L A IKQ KRRE ++ +A+ RLSR L Sbjct: 207 GDSVDNVPGAPGIGIKTAAQLITEYGDLDTLLARAGEIKQPKRRETLINFADQIRLSRAL 266 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 V L D P+ PL+ L + + + L +FL+ +EF L RV D AA Sbjct: 267 VKLDCDTPLPQPLDALTVREPDKEALAAFLEQMEFRSLARRVG---DGSAA--------- 314 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 A +DR + S+S + + P + I++ Sbjct: 315 --------ATPGTLDRPAAPPKAPVVSVSYMGAAARAAAHP----------VEPVKIDHA 356 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + + ++ WV K G +F TD + + + ++++ E Sbjct: 357 AYACVRDLATLKAWVAKATDKGLVAFDTETDALSSATAGLCGVSLAIAPG--------EA 408 Query: 427 IFIDLSVHTSQDSTG-------KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 +I +S D + ++++ LK E+ LK+ N KYD VL R+ Sbjct: 409 CYIPISHCEKADGLAFEAPADIEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH 468 Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536 GI + ED ML+SYVL++G H + +++ L + K++ S K I ++ Sbjct: 469 GIQVAPIEDTMLISYVLEAGLHGHGMDELSELHLGHKPIPFKQVAGSGKGQISFKHVALP 528 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 + +A E+++V L+L+ L+P+L L VYE L++PM V++ ME G+++D + L+ Sbjct: 529 EATAYAAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALR 588 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 +S E S + E +L G FNL SPKQ+GD+LF +++ G KT TGQW T + Sbjct: 589 LLSNEFSLRMAQFEARAQELVGRPFNLGSPKQIGDVLFGEMQMKGGKKTATGQWSTDSDV 648 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + ++ + + +L+WRQLSK+K TY ++L I T RVHT Y+LA+T TGRL+S Sbjct: 649 LESLAL-EHELPRVLLDWRQLSKLKGTYTENLIAAIAPSTGRVHTSYALAATTTGRLSSS 707 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T+ G+KIR+AF++ P LISADYSQIELR+LAHI I L + F+ LD Sbjct: 708 DPNLQNIPVRTEEGRKIRKAFVAAPGHVLISADYSQIELRLLAHIGDIPQLKKAFQEGLD 767 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH M A+E+F IE + P +RR AK INF I+YGIS F LA QL I + EA YIK YF Sbjct: 768 IHAMTASEMFDTPIEGMDPMIRRRAKAINFGIVYGISAFGLANQLGISQGEAGAYIKTYF 827 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 RFPGI Y++ TK FVR++GYV TIFGR+I+ +I + ++ R ERAAINAPIQG+A Sbjct: 828 ERFPGIQAYMDATKAFVREHGYVTTIFGRKINIPDIEAKSAAHRQFAERAAINAPIQGAA 887 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ RRAMI + +LE L+T+MLLQ+HDELVFE PE E A ++ MEKA P + Sbjct: 888 ADVMRRAMIRMPVALEAAGLSTRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAV 947 Query: 957 NLRVPLKVNIKVSNNWQEEN 976 L +PL V + ++NW E + Sbjct: 948 ALSIPLTVEARAASNWDEAH 967 >gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000] gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000] Length = 982 Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/980 (42%), Positives = 593/980 (60%), Gaps = 50/980 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LFLVDGS++++RA++A P L+RK DGLPV A+ GFCNMLWKLL++ + ++ +H AVI+D Sbjct: 43 LFLVDGSAYLFRAYHALPPLTRKSDGLPVGAVQGFCNMLWKLLRDMQGDT-PTHLAVIWD 101 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFRN +Y YKA+RP PE L+PQ PLVR AT AFG+PAIE+ G+EADD+IA Y Sbjct: 102 HSEKTFRNALYDQYKAHRPPPPEDLIPQFPLVREATLAFGVPAIELPGYEADDLIAAYAC 161 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A G I+S+DKDLMQLV +YD +K +I+ E V +K+G+ PEK+V +QAL Sbjct: 162 KARDIGGEAIIVSSDKDLMQLVGDGVSMYDPMKGVRIEREQVFEKFGVYPEKVVDVQALC 221 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DN+PG PGIG KTAA L+ EYG+L+ +L A IKQ KRRE ++ +A+ RLSR L Sbjct: 222 GDSVDNVPGAPGIGIKTAAQLITEYGDLDTLLARAGEIKQPKRRETLINFADQIRLSRAL 281 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 V L D P+ PL+ L + + + L +FL+ +EF L RV D AA Sbjct: 282 VKLDCDTPLPQPLDALTVREPDKEALAAFLEQMEFRSLARRVG---DGSAA--------- 329 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 A +DR + S+S + + P + I++ Sbjct: 330 --------ATPGTLDRPAAPPKAPVVSVSYMGAAARAAAHP----------VEPVKIDHA 371 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + + ++ WV K G +F TD + + + ++++ E Sbjct: 372 AYACVRDLATLKAWVAKATDKGLVAFDTETDALSSATAGLCGVSLAIAPG--------EA 423 Query: 427 IFIDLSVHTSQDSTG-------KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 +I +S D + ++++ LK E+ LK+ N KYD VL R+ Sbjct: 424 CYIPISHCEKADGLAFEAPADIEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH 483 Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536 GI + ED ML+SYVL++G H + +++ L + K++ S K I ++ Sbjct: 484 GIQVAPIEDTMLISYVLEAGLHGHGMDELSELHLGHKPIPFKQVAGSGKGQISFKHVALP 543 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 + +A E+++V L+L+ L+P+L L VYE L++PM V++ ME G+++D + L+ Sbjct: 544 EATAYAAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALR 603 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 +S E S + E +L G FNL SPKQ+GD+LF +++ G KT TGQW T + Sbjct: 604 LLSNEFSLRMAQFEARAQELVGRPFNLGSPKQIGDVLFGEMQMKGGKKTATGQWSTDSDV 663 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + ++ + + +L+WRQLSK+K TY ++L I T RVHT Y+LA+T TGRL+S Sbjct: 664 LESLAL-EHELPRVLLDWRQLSKLKGTYTENLIAAIAPSTGRVHTSYALAATTTGRLSSS 722 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T+ G+KIR+AF++ P LISADYSQIELR+LAHI I L + F+ LD Sbjct: 723 DPNLQNIPVRTEEGRKIRKAFVAAPGHVLISADYSQIELRLLAHIGDIPQLKKAFQEGLD 782 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH M A+E+F IE + P +RR AK INF I+YGIS F LA QL I + EA YIK YF Sbjct: 783 IHAMTASEMFDTPIEGMDPMIRRRAKAINFGIVYGISAFGLANQLGISQGEAGAYIKTYF 842 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 RFPGI Y++ TK FVR++GYV TIFGR+I+ +I + ++ R ERAAINAPIQG+A Sbjct: 843 ERFPGIQAYMDATKAFVREHGYVTTIFGRKINIPDIEAKSAAHRQFAERAAINAPIQGAA 902 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ RRAMI + +LE L+T+MLLQ+HDELVFE PE E A ++ MEKA P + Sbjct: 903 ADVMRRAMIRMPVALEAAGLSTRMLLQVHDELVFEAPEAEAERACAVVRAVMEKAAEPAV 962 Query: 957 NLRVPLKVNIKVSNNWQEEN 976 L +PL V + ++NW E + Sbjct: 963 ALSIPLTVEARAASNWDEAH 982 >gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149] gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149] Length = 933 Score = 773 bits (1995), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/981 (41%), Positives = 592/981 (60%), Gaps = 69/981 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + ++ + +H A Sbjct: 7 KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLHRYVEGNTGPDAPTHVA 66 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I E +G+EADDIIA Sbjct: 67 VIFDKGSHTFRNDMYDLYKANREAMPEDLRPQIPLTRRATEAFNIACKEKEGYEADDIIA 126 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A K G TIIS+DKDLMQLV + D +K ++ID + V +K+G+ PE++V + Sbjct: 127 TLAVQARKAGGTCTIISSDKDLMQLVGDGVEMLDAMKNKRIDRDGVFEKFGVYPERVVDV 186 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+L+++L A IKQ KR++ ++++A+ RL Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDSLLERAGEIKQPKRKQTLIDHADQIRL 246 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 SR+LV+L P+ LE L + D N +L+ FL +EF L R+A + I Sbjct: 247 SRRLVLLDEATPLDFTLEDLEVRDPNPDQLMPFLAEMEFRTLTKRIADQLKVEMPEIN-- 304 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 +T N A+E ++ P Sbjct: 305 ----DTPANAPAALE----------------------------------------IADVP 320 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + Y+++ + K +Q+W+ ++ G + T ++ + + +++ K Sbjct: 321 FDKAGYSQVDSAKALQEWIDQIYERGYVAVDTETTGLNDMTADLVGVSLCVEPGK----- 375 Query: 423 KVETIFIDL--SVHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKL 474 +I L +S D G + L + L LK E+E LKIG N+KYD Sbjct: 376 ---ACYIPLIHKAASSDDLFGSDDLAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAK 432 Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 + + GI++ +D MLMSY + G H + ++++++L +T K +L S KS+I D Sbjct: 433 IFAQVGITVAPIDDTMLMSYAMHGGLHGHGMDALSERYLGHTPLPIKPLLGSGKSAITFD 492 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 K+ + +A E+++V L+LW +P L ++ VYE L++PM+ V++ ME GI++D Sbjct: 493 KVPLNDAVPYAAEDADVTLRLWQQFKPALHRAQVTRVYETLERPMVAVLADMERAGIKVD 552 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +D L ++S S+ + +LE+ IY L G KFN+ SPKQLG+ILF ++ G K KTG + Sbjct: 553 RDTLSRMSNAFSQKMAALEDEIYTLVGRKFNVGSPKQLGEILFDEMGLQGGKKGKTGAYA 612 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A LE + ++ + + IL+WRQLSK+KSTY D+L +HIN T RVHT YS+A TG Sbjct: 613 TGADVLEDLAT-EHELPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTG 671 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RLAS +PNLQNIPI+++ G++IR AF++ K L++ DYSQIELRILAHIA I L F Sbjct: 672 RLASTDPNLQNIPIRSEEGRRIREAFVAEEGKTLVALDYSQIELRILAHIADIPALKAAF 731 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ DIH M A+E+F V +++++P++RR AK INF +IYGIS F LA LRIPRSEA + Sbjct: 732 DDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRSEAQGF 791 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I RYF RFPGI Y++ TK F +++GYVET+FGRRIH I + K RAAINAP Sbjct: 792 IDRYFERFPGIRTYMDDTKAFAKEHGYVETLFGRRIHTPNIGA-KGPQAGFAARAAINAP 850 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AAD+ RRAMI + ++ D L KMLLQ+HDEL+FEV + ME A Sbjct: 851 IQGTAADVIRRAMIRMPAAIVD--LPAKMLLQVHDELLFEVDQGSQGALIDAARSVMESA 908 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 P ++L V L V+ NW Sbjct: 909 ADPVVHLDVKLTVDAGEGPNW 929 >gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217] gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217] Length = 936 Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/984 (40%), Positives = 599/984 (60%), Gaps = 68/984 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGSSFI+RA++A P L+RK DGLP+ A++GFCNML + ++ + +H A Sbjct: 7 KGCHLHLIDGSSFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVEGNNGPDAPTHVA 66 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++YP+YKANR +PE L PQ+PL R AT+AF I EI+GFEADDIIA Sbjct: 67 VIFDKGSHTFRNDLYPEYKANREAMPEDLRPQIPLTREATRAFNIACEEIEGFEADDIIA 126 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A G VTIIS+DKDLMQLV + D +K ID++ V +K+G+ P+++V + Sbjct: 127 TLACQARDLGGRVTIISSDKDLMQLVGNGVEMLDAMKNRLIDVDGVREKFGVTPDRVVDV 186 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L A IKQ KRR+ ++E + + Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEALLDRAGEIKQPKRRDTLIEKRDQIEM 246 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L + P+ L+ L + D + L+ FL +EF L R+A DA I Sbjct: 247 SKRLVQLDCNTPLEFTLDDLEVRDPDPEVLLCFLAQMEFRTLSKRIADALGKDAPTI--- 303 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 E PQ+ E Q ++ +P Sbjct: 304 ----------------------------------------PEPKPQQAADEG-QSVADWP 322 Query: 363 -INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 I ++Y ++ + K + W+ + + G + T +++ + + I+++ + Sbjct: 323 AIEPETYERVSDQKSLDAWIAAIRSQGYVAVDTETTSLNEMQADLVGISLAIAPGR---- 378 Query: 422 FKVETIFIDLS--VHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDK 473 +I L+ + D G + + + + L+ LK E+ LKIG N+KYD Sbjct: 379 ----ACYIPLTHKDGAADDLFGSDKMAEGQMPVADALAALKPVLEDHAILKIGQNMKYDA 434 Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 + GI++ +D MLMSY L +G H + ++++++L +T K +L S K+++ Sbjct: 435 KIFAARGITVEPIDDTMLMSYALHAGLHGHGMDALSERYLMHTPIPIKSLLGSGKTAVTF 494 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 D++ + ++A E++++ L+LWL +P+L ++ VYE L++P++ V++QME G+++ Sbjct: 495 DRVPVDEAVKYAAEDADITLRLWLTFKPQLHRARVTTVYETLERPLVPVLAQMERYGVKV 554 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D+ L+ +S + ++ + +LE I++L+G FN+ SPKQLG+ILF ++ G K KTG + Sbjct: 555 DRATLRAMSGKFAQKMAALESEIHELAGRSFNVGSPKQLGEILFDEMGLSGGEKGKTGAY 614 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T A LE + ++ + +L+WRQLSK+KSTY D+L +HI+ T RVHT Y A T Sbjct: 615 ATGADVLEDLAT-EHELPARVLDWRQLSKLKSTYTDALQDHIDPDTGRVHTSYVQAGANT 673 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRLAS +PNLQNIP++++ G++IR AF++ +L+S DYSQIELRILAH+A+I L Q Sbjct: 674 GRLASTDPNLQNIPVRSEEGRRIREAFVAASGHRLVSLDYSQIELRILAHVAEIETLKQA 733 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F DIH M A+E+F V +++++P++RR AK INF +IYGIS F LA LRIPRSEA Sbjct: 734 FREGHDIHAMTASEMFNVPLDQMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRSEAQG 793 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I RYF RFPGI +Y++ T F +++GYV+T+FGR+IH EI S K RAAINA Sbjct: 794 FIDRYFERFPGIKDYMDATVAFAKEHGYVQTLFGRKIHTPEI-SAKGPRAGFARRAAINA 852 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI RRAMI + ++E L KMLLQ+HDEL+FEV EE +I M+ Sbjct: 853 PIQGSAADIIRRAMIRMPDAIE--GLPCKMLLQVHDELIFEVAEEATDRLIEIARDVMQG 910 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A P ++L VPL V+ NW E Sbjct: 911 AASPAVHLDVPLVVDAGQGVNWAE 934 >gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199] gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199] Length = 943 Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/994 (41%), Positives = 594/994 (59%), Gaps = 96/994 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 ++HL+LVDGS +I+RA++A P ++R DG PVNA+ GF +ML +L+ + A H AV Sbjct: 21 QSHLYLVDGSGYIFRAYHALPPMNRP-DGTPVNAVFGFSSMLVRLIDDLD----ADHVAV 75 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFRNEIYP+YKA RP+ PE L+PQ L+R AT+AF +P IE+ GFEADD+IAT Sbjct: 76 IFDAGRTTFRNEIYPEYKAQRPEAPEDLVPQFSLIRDATRAFNVPCIEMDGFEADDLIAT 135 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y +A + G+ VT++S+DKDLMQLV ++D +K I VI+K+G+PPEK+V +Q Sbjct: 136 YARLASERGWRVTVVSSDKDLMQLVKDGIDMFDPMKNRPIGRAEVIEKFGVPPEKVVDVQ 195 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 +L GDS+DN+PG+PGIG KTAA L+ EYG+LE++L A IKQ KRREN++EYAE AR+S Sbjct: 196 SLAGDSVDNVPGVPGIGIKTAAQLIDEYGDLESLLARAGEIKQPKRRENLIEYAEKARIS 255 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 ++LV LR DV ++ LE L + + ++ FLK F +L+ R + + E V Sbjct: 256 KQLVTLRDDVEVSEALEALAVRHIDPAMVLPFLKEQGFKRLVARFESEEVQAGGSSETVA 315 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 + TE G A E+ +D Sbjct: 316 I----TEPAGEAAGYELVQDIAA------------------------------------- 334 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 +++W+ + +G+ +F T ++D + + ++++ K Sbjct: 335 -------------LERWIVAAQDLGTVAFDTETTSLDCMRADLVGVSLAVAPGK------ 375 Query: 424 VETIFIDLSVHTSQDSTG-------KNTLTKEI-----LSYLKKFFENEHFLKIGHNIKY 471 +I L H + + G K+I ++ LK EN LKI HN KY Sbjct: 376 --ACYIPLR-HVGRQAQGDLLGAGPAEEAPKQIPFDTAMARLKDLLENPAVLKIAHNAKY 432 Query: 472 DKLVLHR---YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525 D LVL R GI++ +D M +SYVL+ G H + +A L +T +E+ K Sbjct: 433 DALVLSRPKNGGITVAPIDDTMCLSYVLEGGLHGHGLDELATLHLGHTNIKFEEVCGKGK 492 Query: 526 SSI-----PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + I PIDK +A E+++V +L LL+P+L+ E++ VYE L++ +I V+ Sbjct: 493 TQIGFAEAPIDKAC-----AYAAEDADVTFRLHALLKPRLVPERMTTVYETLERALIPVL 547 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ME GI++D +L+ +SA+ +K L++LE I++ +GE FN+ SPKQLG+ILF K+ Sbjct: 548 VGMERNGIKVDPTILRDMSADFAKRLVTLEGEIHEQAGEPFNVGSPKQLGEILFDKMGLA 607 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 G K KTG + T A LE + + + +L+WRQ++K+KSTY D+L IN T RVH Sbjct: 608 GGKKGKTGAYGTGADVLETLAAEGSDFARKVLDWRQIAKLKSTYTDALVETINAETGRVH 667 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T YS+ TGRL+S +PNLQNIPI+T+ G+KIR AF++ P L+S DYSQIELR++A Sbjct: 668 TSYSMVGAATGRLSSNDPNLQNIPIRTEEGRKIRTAFVAEPGNVLLSVDYSQIELRLVAD 727 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 IA I L + F + +DIH A+E+FGV + +++P +RR AK INF IIYGIS F LA Q Sbjct: 728 IAGIESLRKAFLDGIDIHAQTASEVFGVPLSEMTPDIRRKAKAINFGIIYGISGFGLARQ 787 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L ++EA YI YF RFPGI +Y+ + K F R++G+VET FGR++H I ++R Sbjct: 788 LSTSQAEAQAYINAYFERFPGIRDYMTEMKTFAREHGFVETKFGRKVHIQAIRDKNPAMR 847 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 N ERAAINAPIQG+AAD+ +RAM+ + +L+ + +MLLQ+HDEL+FEVPE+++ Sbjct: 848 NFGERAAINAPIQGTAADVIKRAMVRLPVALDKAQSKARMLLQVHDELLFEVPEDDVEAT 907 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 S ++ ME A P++NL VPL +W E Sbjct: 908 SALVREVMEGAAAPQLNLSVPLIAEAGWGKSWSE 941 >gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM] gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM] Length = 933 Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/984 (40%), Positives = 600/984 (60%), Gaps = 71/984 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + + + +H A Sbjct: 7 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYISDDHGPDAPTHVA 66 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I EI+GFEADDIIA Sbjct: 67 VIFDKGSHTFRNDLYGLYKANREAMPEDLRPQMPLTREATRAFNIACQEIEGFEADDIIA 126 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A G VTIIS+DKDLMQLV + D +K +ID+E V +K+G+ P+++V + Sbjct: 127 TLACQARDLGGRVTIISSDKDLMQLVGGGVEMLDAMKNRRIDVEGVEEKFGVGPDRVVDV 186 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L A IKQ KRR+ ++E+ L Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLETLLDRAEEIKQPKRRQTLIEHRAQIEL 246 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L + P+ L+ L + D + L+SFL +EF L R+A Sbjct: 247 SKRLVQLDCNTPLDFGLDDLEVRDPDPETLLSFLSEMEFRTLSTRIA------------- 293 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 K +A+E + D S+ S+ + +P Sbjct: 294 ---------KALAVEAPVIPDVAPAASEDSA-------------------------ADWP 319 Query: 363 -INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 I ++Y ++ + +Q W+ ++ G + T +++ ++ + I+++ Sbjct: 320 AIAPEAYERVSDMAALQVWIDRILARGYVAIDTETTSLNEMQAELVGISLAVEPG----- 374 Query: 422 FKVETIFIDLSVH--TSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDK 473 + +I L S D G + L + +LS L+ E+ LKIG N+KYD Sbjct: 375 ---QACYIPLGHREGASDDLFGSDALAEGQLPRDAVLSALRPVLEDAAVLKIGQNMKYDA 431 Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 + G+++ +D MLMSY L+SG +H + ++++++L++ K +L + KS++ Sbjct: 432 KIFAGLGLTIAPIDDTMLMSYALNSGIHNHGMDALSERYLAHNPIPIKTLLGTGKSAVTF 491 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 DK+ + ++A E++++ L+LW + +P+L +++ VYE L++P++ V+++ME GI + Sbjct: 492 DKVPIDEAVKYAAEDADITLRLWHMFKPQLHQKQVTTVYETLERPLVPVLARMERHGILV 551 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D+D+L ++S ++ + LE I++L+G FN+ SPKQLG+ILF ++ G K KTG + Sbjct: 552 DRDVLSRMSNAFAQKMGGLEAEIHELAGRSFNVGSPKQLGEILFDEMALEGGKKGKTGAY 611 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T A LE + ++ + +L+WRQLSK+KSTY D+L +HI+ T RVHT Y T Sbjct: 612 ATGADVLEDLAT-EHELPARVLDWRQLSKLKSTYTDALQDHIDPNTGRVHTSYVQTGAST 670 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRLAS +PNLQNIP++++ G++IR AF++ K+L+S DYSQIELRILAH+A I L Q Sbjct: 671 GRLASTDPNLQNIPVRSEEGRRIREAFVADAGKRLVSLDYSQIELRILAHVAGIDALKQA 730 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F + LDIH M A+E+FGV +++++ +RR AK INF +IYGIS F LA LRIPR+EA Sbjct: 731 FRDGLDIHAMTASEMFGVPLDEMTSDVRRRAKAINFGVIYGISGFGLARNLRIPRAEAQG 790 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I RYF RFPGI Y+++T F + +GYV+T+FGRRIH EI + K +RAAINA Sbjct: 791 FIDRYFERFPGIRAYMDETVEFAKAHGYVQTLFGRRIHTPEIAA-KGPRAGFAKRAAINA 849 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQG+AADI RRAMI + +++ D L KMLLQ+HDEL+FE E+ + ME Sbjct: 850 PIQGTAADIIRRAMIRMPEAIAD--LPCKMLLQVHDELLFEAEEDAVDAVITAAREVMEG 907 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A P ++L VPL V+ NW E Sbjct: 908 AADPAVHLDVPLTVDAGSGMNWAE 931 >gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b] gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b] Length = 938 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/989 (41%), Positives = 604/989 (61%), Gaps = 76/989 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQ-NSRKESIASHF 61 K HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + + NS +H Sbjct: 7 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYIDGNSASSDAPTHI 66 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 AVIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I EI+G+EADDII Sbjct: 67 AVIFDKGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRRATEAFNIACKEIEGYEADDII 126 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 AT A G VTIIS+DKDLMQLV ++D +K +ID+E V +K+G+ P+++V Sbjct: 127 ATLACQARDLGGRVTIISSDKDLMQLVGDGVEMFDAMKNRRIDVEGVEEKFGVGPDRVVD 186 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L A I Q KRR+ ++E+ Sbjct: 187 VQALAGDSVDNVPGAPGIGIKTAALLINEFGSLEELLDRAEDIPQPKRRQTLIEHRAQIE 246 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LS+KLV L + P+ L+ L L D + L++FL +EF L R+A + + P Sbjct: 247 LSKKLVQLDCETPLDFTLDDLELRDPDPDTLLAFLAEMEFRTLSKRIADSLGAEP----P 302 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 V+ D N A TE D + Sbjct: 303 VIPDTNPAG----ANPTEGD-----------------------------------AAPDW 323 Query: 362 P-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 P I+ DSY + + + ++ W+ ++ G + T +++ + + I+++ + Sbjct: 324 PAIDPDSYEHVRDMEALEAWIAHIQARGLVAVDTETTSLNEMQAALVGISLAVEPGR--- 380 Query: 421 SFKVETIFIDLSVHT--------SQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKY 471 +I L HT S D+ + L + +L LK E++ LKIG N+KY Sbjct: 381 -----ACYIPLR-HTEGASGDLFSSDALAEGQLDLDAVLGALKPMLEDDAILKIGQNMKY 434 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 D + R+GI + F+D MLMSY L++G H + ++++++LS+ KE+L + KS++ Sbjct: 435 DAKIFARHGIRVAPFDDTMLMSYALNAGIHGHGMDTLSERYLSHQPIPIKELLGTGKSAV 494 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D++ + ++A E++++ L+LW + +P+L EK+ VYE L++P+ V++QME GI Sbjct: 495 TFDRVPVADAVKYAAEDADITLRLWHVFKPQLHREKVTTVYETLERPLSPVLAQMERNGI 554 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ++D++ L ++S + ++ + LEE I++L+G KFN+ SPKQLG+ILF ++ G + KTG Sbjct: 555 KVDRETLSRMSGKFAQKMAQLEEEIHELAGRKFNVGSPKQLGEILFDEMGLDGGKRGKTG 614 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T A LE + ++ + +L+WR LSK+KSTY D+L +HI+ T RVHT Y Sbjct: 615 AYATGADVLEDLAT-EHDLPARVLDWRALSKLKSTYTDALQDHIDPDTGRVHTSYVQTGA 673 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRLAS +PNLQNIP++++ G++IR AF++ P L+S DYSQIELRILAHIA I L Sbjct: 674 TTGRLASTDPNLQNIPVRSEEGRRIREAFVAEPGNVLVSLDYSQIELRILAHIADIDALR 733 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + DIH M A+E+F V +++++P++RR AK INF +IYGIS F LA LRIPR EA Sbjct: 734 QAFRDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRGEA 793 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +I RYF RFPGI Y++KT +F +++G+V+T+F R+IH EI S K RAAI Sbjct: 794 QGFIDRYFERFPGIKTYMDKTVDFAKEHGFVQTLFNRKIHTPEI-SAKGPRAGFARRAAI 852 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS- 947 NAPIQG+AADI RRAMI + ++E + KMLLQ+HDEL+FEV E A +I + Sbjct: 853 NAPIQGTAADIIRRAMIRMPAAIE--GMPAKMLLQVHDELIFEV---EAGAADALIATAR 907 Query: 948 --MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A P + + VPL V+ NW E Sbjct: 908 DVMEAAADPAVKIDVPLVVDAGQGANWAE 936 >gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6] gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6] Length = 936 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/982 (40%), Positives = 589/982 (59%), Gaps = 65/982 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML+K +++++ +H A Sbjct: 8 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFKQVEDNKGPDAPTHVA 67 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD+ +FRN++Y YKANRP PE L PQ PL R AT+AF I E++G+EADDIIA Sbjct: 68 VIFDHSGKSFRNDLYDLYKANRPPAPEDLRPQFPLTRDATRAFNIACKEVEGYEADDIIA 127 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T + A G TIIS+DKDLMQLV + D +K ++ID + V +K+G+ P+++V + Sbjct: 128 TLAHQARAAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKRIDTDGVHEKFGVGPDRVVDV 187 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L A IKQ KRR+ ++E + L Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAEEIKQPKRRQTLIEKRDQIEL 247 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L + + ++ L +++ L++FL +EF L R+A +A I Sbjct: 248 SKQLVQLDCAMELDFTIDDLEVQEPEAETLLTFLAEMEFRTLTKRMADQLGLEAPAIPEA 307 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 T+ +E TP + P Sbjct: 308 PAQQGTS---------------------------------TEVTPPEAV----------P 324 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + + Y + + +++ WV ++ G + T +D + I++ Sbjct: 325 FDAEKYQCVTSAEELAPWVAQIRERGYVAVDTETTGLDEMVVDLVGISLCVEPG------ 378 Query: 423 KVETIFIDLSVHTSQDST-GKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKLV 475 E +I L+ D G L + + L LK E+ LKIG N+KYD + Sbjct: 379 --EACYIPLTHKVGGDDLFGGEGLAEGQMPLDQALEMLKPVLEDPAILKIGQNMKYDAKI 436 Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 LHRYG + +D MLMSY L +G H + ++++++L + K +L S KS+I D+ Sbjct: 437 LHRYGADVAPIDDTMLMSYALHAGLHGHGMDTLSERYLDHKPIPIKPLLGSGKSAITFDR 496 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E++++ L+LW L +P+L E++ VYE L++P++ V++QME GI++D+ Sbjct: 497 VPIANAVPYAAEDADITLRLWQLFKPQLHQEQVTTVYETLERPLVPVLAQMERHGIKVDR 556 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 ++L ++S ++ + LE I++++G FN+ SPKQLG+ILF KL+ P G K KTG + T Sbjct: 557 EVLSRMSNAFAQKMAGLESEIHEMAGADFNVGSPKQLGEILFDKLELPGGKKGKTGAYAT 616 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A LE + ++ + +L+WRQLSK+KSTY D+L +HIN T+RVHT Y+ TGR Sbjct: 617 GADILEDLAT-EHALPGLVLDWRQLSKLKSTYTDALQDHINAETRRVHTSYAQTGASTGR 675 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 +AS +PNLQNIP++T+ G++IR AF++ L+S DYSQIELRILAH+A I L Q F Sbjct: 676 MASTDPNLQNIPVRTEEGRRIREAFVAGEGNVLLSLDYSQIELRILAHMAGIDALKQAFA 735 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH M A+E+F V + +++P +RR AK INF +IYGIS F LA LRIPR EA D+I Sbjct: 736 EGQDIHAMTASEMFDVPMAEMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRKEAQDFI 795 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 RYF RFPGI Y++ T F +++G+V+T+FGR+IH EIN+ K +RAAINAPI Sbjct: 796 DRYFQRFPGIRRYMDSTVEFAKEHGFVQTLFGRKIHTAEINA-KGPRAGFAKRAAINAPI 854 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AAD+ RRAMI + ++ L +MLLQ+HDEL+FEVPE + + ME A Sbjct: 855 QGTAADVIRRAMIRMPGAIA--HLPARMLLQVHDELLFEVPEAAVEETIAVAKEVMEGAA 912 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 P ++L V L V NW E Sbjct: 913 NPAVHLDVKLLVEAGQGQNWAE 934 >gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] Length = 933 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/984 (41%), Positives = 600/984 (60%), Gaps = 70/984 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + + +H A Sbjct: 6 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVDGDHGPDAPTHLA 65 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF IP E++G+EADDIIA Sbjct: 66 VIFDKGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRAATEAFNIPCKELEGYEADDIIA 125 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T + A G VTI+S+DKDLMQLV ++D +K ++ID + V +K+G+ P+++V + Sbjct: 126 TLSNQARDAGGRVTIVSSDKDLMQLVGDGVEMFDAMKNKRIDRDGVFEKFGVFPDRVVDV 185 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+LE++L A IKQ KRR+ +++ L Sbjct: 186 QALAGDSVDNVPGAPGIGVKTAALLINEYGSLEDLLDRAEEIKQPKRRQTLIDMRAQIEL 245 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L + P+ L+ L L D + +L+SFL +EF L R+A +A PV Sbjct: 246 SKRLVELDANTPLDFTLDDLELRDPDPEKLLSFLAEMEFRTLTKRIADKLGAEA----PV 301 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + + + E +E+ PQ Q P Sbjct: 302 IAEKASPE--------------------------------AEEAPQP---------EQPP 320 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + Y + + ++ W+ + G + T +++ + + I+++ Sbjct: 321 FDASRYECVRDAAALETWIAQARERGWVAVDTETTSLNEMTADLVGISLAVEPGA----- 375 Query: 423 KVETIFIDLSVHTSQDST---GKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDK 473 +I L H D+ G + L ++ L LK E+ LKIG N+KYD Sbjct: 376 ---ACYIPLG-HRDGDAGDLFGSDKLAEGQLPLQQTLDLLKPMLEDPAILKIGQNMKYDA 431 Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 + RYG+++ +D ML+SY + G H + ++++++LS+T K +L S KS+I Sbjct: 432 KIFARYGVAVAPIDDTMLLSYAMHGGLHGHGMDTLSERYLSHTPIPIKPLLGSGKSAITF 491 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 DK++ + +A E++++ L+LW L +P+L ++ VYE L++P++ V+++ME+ G+++ Sbjct: 492 DKVAIDEATAYAAEDADITLRLWQLFKPQLHRAQVTTVYETLERPLVPVLAEMEMHGVKV 551 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D+++L ++S ++ + LE I++L+GE FN+ SP Q+G+ILF K+ G K KTG++ Sbjct: 552 DREVLSRMSNAFAQKMAGLEAEIHELAGEPFNVGSPAQVGEILFDKMSLEGGKKGKTGKY 611 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T A LE + ++ + IL+WRQLSK+KSTY D+L HIN T RVHT YS+ T Sbjct: 612 STPADVLEDLAT-EHELPARILDWRQLSKLKSTYTDALQTHINPDTGRVHTSYSITGANT 670 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRLAS +PNLQNIP++T+ G++IR AF++ P L+S DYSQIELRILAHIA I L Q Sbjct: 671 GRLASTDPNLQNIPVRTEEGRRIREAFVAEPGNVLLSLDYSQIELRILAHIADIPALKQA 730 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F + LDIH M A+E+F V +++++P++RR AK INF +IYGIS F LA LRIPR+EA + Sbjct: 731 FADGLDIHAMTASEMFDVPLDQMTPEVRRRAKAINFGVIYGISGFGLARNLRIPRAEAQE 790 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I RYF RFPGI Y++ T F +++G+V+T+FGRRIH EIN+ K RAAINA Sbjct: 791 FIDRYFERFPGIRTYMDDTIAFAKEHGFVQTLFGRRIHTPEINA-KGPHAGFARRAAINA 849 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQG+AAD+ RRAM+ + ++ D L KMLLQ+HDEL+FEV EE + ME Sbjct: 850 PIQGTAADVIRRAMVRMPDAIRD--LPAKMLLQVHDELLFEVAEEAVEDTIAAARDIMEG 907 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A P + L V L V+ NW E Sbjct: 908 AADPAVRLDVRLVVDAGRGANWAE 931 >gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] Length = 932 Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/989 (40%), Positives = 601/989 (60%), Gaps = 82/989 (8%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ + +H A Sbjct: 7 KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHRYVEGNTGPDAPTHVA 66 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I E +GFEADDIIA Sbjct: 67 VIFDKGSHTFRNDMYDKYKANREAMPEDLRPQIPLTRTATEAFNIACKEKEGFEADDIIA 126 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A G TIIS+DKDLMQLV + D +K + ID + V +K+G+ P+++V + Sbjct: 127 TLAVQARAAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKSIDRDGVFEKFGVYPDRVVDV 186 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+L+ +L A IKQ KRR+ ++++A+ RL Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDALLERAGEIKQPKRRQTLIDHADQIRL 246 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 SR LV L + P+ LE L + D + +L+ FL +E Sbjct: 247 SRDLVKLDENTPLDFTLEDLEVRDPDADQLLGFLAEME---------------------- 284 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP---QKLFLERLQKLS 359 F +LS + +++ ++ P + + Sbjct: 285 ----------------------------FRTLSKRVAEVLGKEAPTIAEAPVAADAPAAA 316 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 P + + Y + +T +Q W+ ++ G + T +D ++ + +++ K Sbjct: 317 DVPFDAELYEHVSDTAALQAWIDRIYEFGYVAVDTETTGLDDMVAQLVGVSLCVEPGK-- 374 Query: 420 TSFKVETIFIDL--SVHTSQDSTGKNTL------TKEILSYLKKFFENEHFLKIGHNIKY 471 +I L S D G + L T+E L L E+ LKIG N+KY Sbjct: 375 ------ACYIPLIHKARGSDDLFGSDDLAEGQIPTEEALRLLTPMLEDPSILKIGQNMKY 428 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 D + + GI++ +D ML+SY + +G H + ++++++LS+T K +L + KS+I Sbjct: 429 DSKIFAQLGINVAPIDDTMLLSYAMHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAI 488 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 DK+ + ++A E++++ L+LW L +P+L + VYE L++P++ V++ ME +G+ Sbjct: 489 TFDKVPLADAVKYAAEDADITLRLWQLFKPQLHRVGVTKVYETLERPLVPVLAAMERSGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ++D+D L ++S ++ + LE++IY+L+G KFN+ SPKQLG+ILF ++ G K KTG Sbjct: 549 KVDRDTLSRMSNAFAQKMAGLEDDIYELAGRKFNVGSPKQLGEILFDEMGLEGGKKGKTG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T A LE + ++ + +L+WRQLSK+KSTY D+L +HIN T RVHT YS+A Sbjct: 609 AYATGADVLEDLAT-EHDLPARVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGA 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRLAS +PNLQNIPI+++ G++IR AF++ P K L++ DYSQIELRILAHIA I L Sbjct: 668 STGRLASTDPNLQNIPIRSEEGRRIREAFVAEPGKALVALDYSQIELRILAHIANIPELK 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F++ +DIH + A+E+FGV +++++ +RR AK INF +IYGIS F LA LRIPR+EA Sbjct: 728 QAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINFGVIYGISGFGLARNLRIPRAEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +I RYF RFPGI Y+ TK F +++G+V+T+FGR+IH EI S K +RAAI Sbjct: 788 QGFIDRYFERFPGIRTYMNDTKAFAKEHGFVQTLFGRKIHTPEI-SAKGPRAGFAQRAAI 846 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV---PEEEITTASQIIV 945 NAPIQG+AAD+ RRAMI + +++D L MLLQ+HDEL+FEV E+++ A++ Sbjct: 847 NAPIQGTAADVIRRAMIRMPDAIKD--LPATMLLQVHDELLFEVEKGAEDDLIAAAR--- 901 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 H ME A P + L V L V+ V +W E Sbjct: 902 HVMENAADPVVKLDVKLDVDAGVGASWAE 930 >gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114] gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114] Length = 933 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/979 (41%), Positives = 596/979 (60%), Gaps = 65/979 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + ++ + +H A Sbjct: 7 KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLHRYVEGNTGPDAPTHVA 66 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I E +G+EADDIIA Sbjct: 67 VIFDKGSHTFRNDMYDLYKANRDAMPEDLRPQIPLTRRATEAFNIACKEKEGYEADDIIA 126 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A G TIIS+DKDLMQLV + D +K ++ID + V +K+G+ PE++V + Sbjct: 127 TLAVQARAAGGRCTIISSDKDLMQLVGDGVEMLDAMKNKRIDRDGVFEKFGVYPERVVDV 186 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ E+G+L+ +L A+ IKQ KRR+ ++++A+ RL Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEFGDLDALLERAAEIKQPKRRQTLIDHADQIRL 246 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 SR+LV+L P+ LE L + + +L+ FL +EF L R+A D +E Sbjct: 247 SRRLVLLDEATPLDFTLEDLEVRTPDPDQLMPFLAEMEFRTLTKRIA-----DQLKVE-- 299 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + +IN T N+ P+ ++ P Sbjct: 300 MPEINDT------------------------------PANAPAAPE---------IADVP 320 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + Y+++ + + +Q W+ ++ G + T ++ ++ + I++ + T+ Sbjct: 321 FDKAGYSQVDSAEALQGWIDQIYERGYVAVDTETTGLNEMTAELVGISLCV---EPGTAC 377 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + I S D G + L + L LK E+E LKIG N+KYD V Sbjct: 378 YIPLIH---KAAGSDDLFGSDDLAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKVF 434 Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 + GI++ +D MLMSY + G H + ++++++L +T K +L S KS+I DK+ Sbjct: 435 AQVGITVAPIDDTMLMSYAMHGGLHGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKV 494 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 S+ +A E+++V L+LW +P L ++ VYE L++PM+ V++ ME GI++D+D Sbjct: 495 PLSEAVPYAAEDADVTLRLWQQFKPALHRAQVTKVYETLERPMVAVLADMERAGIKVDRD 554 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L ++S S+ + +LE+ +Y L G KFN+ SPKQLG+ILF ++ G K KTG + T Sbjct: 555 TLSRMSNAFSQKMAALEDEVYTLVGRKFNVGSPKQLGEILFDEMGLQGGKKGKTGAYATG 614 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 A LE + ++ + + IL+WRQLSK+KSTY D+L +HIN T RVHT YS+A TGRL Sbjct: 615 ADVLEDLAT-EHELPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRL 673 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 AS +PNLQNIPI+++ G++IR AF++ K L++ DYSQIELRILAHIA I L F++ Sbjct: 674 ASTDPNLQNIPIRSEEGRRIREAFVAEEGKTLVALDYSQIELRILAHIADIPALKTAFDD 733 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIH M A+E+F V +++++P++RR AK INF +IYGIS F LA LRIPRSEA +I Sbjct: 734 GQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRSEAQGFID 793 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 RYF RFPGI Y++ TK F +++GYVET+FGRRIH I + K RAAINAPIQ Sbjct: 794 RYFERFPGIRAYMDDTKAFAKEHGYVETLFGRRIHTPNIGA-KGPQAGFAARAAINAPIQ 852 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AAD+ RRAMI + ++ + L KMLLQ+HDEL+FEV + + ME A Sbjct: 853 GTAADVIRRAMIRMPAAIAE--LPAKMLLQVHDELLFEVDQGAQDALIEAARSVMESAAD 910 Query: 954 PKINLRVPLKVNIKVSNNW 972 P ++L V L V+ NW Sbjct: 911 PVVHLDVKLTVDAGQGPNW 929 >gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36] gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36] Length = 932 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/989 (40%), Positives = 602/989 (60%), Gaps = 82/989 (8%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ + +H A Sbjct: 7 KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHRYVEGNTGPDAPTHVA 66 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I E +GFEADDIIA Sbjct: 67 VIFDKGSHTFRNDMYDKYKANREAMPEDLRPQIPLTRTATEAFNIACKEKEGFEADDIIA 126 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A G TIIS+DKDLMQLV + D +K + ID + V +K+G+ P+++V + Sbjct: 127 TLAVQARAAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKSIDRDGVFEKFGVYPDRVVDV 186 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+L+ +L A IKQ KRR+ ++++A+ RL Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDALLERAGEIKQPKRRQTLIDHADQIRL 246 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 SR LV L + P+ LE L + D + +L+ FL +E Sbjct: 247 SRDLVKLDENTPLDFTLEDLEVRDPDADQLLGFLAEME---------------------- 284 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP---QKLFLERLQKLS 359 F +LS + +++ ++ P + + + Sbjct: 285 ----------------------------FRTLSKRVAEVLGKEAPTIAEAPVAADVPAAA 316 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 P + + Y + +T +Q W+ ++ G + T +D ++ + +++ K Sbjct: 317 DVPFDAELYEHVSDTAALQAWIDRIYEFGYVAVDTETTGLDDMVAQLVGVSLCVEPGK-- 374 Query: 420 TSFKVETIFIDL--SVHTSQDSTGKNTL------TKEILSYLKKFFENEHFLKIGHNIKY 471 +I L S D G + L T+E L L E+ LKIG N+KY Sbjct: 375 ------ACYIPLIHKARGSDDLFGSDDLAEGQIPTEEALRLLTPMLEDHSILKIGQNMKY 428 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 D + + GI++ +D ML+SY + +G H + ++++++LS+T K +L + KS+I Sbjct: 429 DSKIFAQLGINVAPIDDTMLLSYAMHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAI 488 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 DK+ + ++A E++++ L+LW L +P+L + VYE L++P++ V++ ME +G+ Sbjct: 489 TFDKVPLADAVKYAAEDADITLRLWQLFKPQLHRVGVTKVYETLERPLVSVLAAMERSGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ++D+D L ++S ++ + LE+ IY+L+G KFN+ SPKQLG+ILF ++ G K KTG Sbjct: 549 KVDRDTLSRMSNAFAQKMAGLEDEIYELAGRKFNVGSPKQLGEILFDEMGLEGGKKGKTG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T A LE + ++ + +L+WRQLSK+KSTY D+L +HIN T RVHT YS+A Sbjct: 609 AYATGADVLEDLAT-EHDLPARVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGA 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRLAS +PNLQNIPI+++ G++IR AF++ P K L++ DYSQIELRILAHIA I L Sbjct: 668 STGRLASTDPNLQNIPIRSEEGRRIREAFVAEPGKALVALDYSQIELRILAHIANIPELK 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F++ +DIH + A+E+FGV +++++ +RR AK INF +IYGIS F LA LRIPR+EA Sbjct: 728 QAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINFGVIYGISGFGLARNLRIPRAEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +I RYF RFPGI Y+ TK F +++G+V+T+FGR+IH EIN+ K +RAAI Sbjct: 788 QGFIDRYFERFPGIRTYMNDTKAFAKEHGFVQTLFGRKIHTPEINA-KGPRAGFAQRAAI 846 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV---PEEEITTASQIIV 945 NAPIQG+AAD+ RRAMI + +++D L MLLQ+HDEL+FEV E+++ A++ + Sbjct: 847 NAPIQGTAADVIRRAMIRMPHAIKD--LPATMLLQVHDELLFEVEKGAEDDLIAAARQV- 903 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A P + L V L V+ V +W E Sbjct: 904 --MENAADPVVKLDVKLDVDAGVGASWAE 930 >gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035] gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035] Length = 934 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/980 (40%), Positives = 596/980 (60%), Gaps = 60/980 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGSSFI+RA++A P L+RK DGLP+ A++GFCNML + ++ + +H A Sbjct: 5 KGCHLHLIDGSSFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVEGNNGHDAPTHVA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++YP+YKANR +PE L PQ+PL R AT+AF I E +G+EADDIIA Sbjct: 65 VIFDKGSHTFRNDLYPEYKANREAMPEDLRPQIPLTREATRAFNIACEEKEGYEADDIIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A G VTIIS+DKDLMQLV + D +K ID+E V +K+G+ P+++V + Sbjct: 125 TLACQARDLGGRVTIISSDKDLMQLVGDGVEMLDAMKNRLIDVEGVREKFGVSPDRVVDV 184 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L A IKQ KRR+ ++E + Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEALLDRAEEIKQPKRRDTLIEKRAQIEM 244 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI-EP 301 S++LV L + P+ L+ L + D + L+ FL +EF L R+A A I EP Sbjct: 245 SKRLVQLDCNTPLDFTLDDLEVRDPDPEMLLGFLAQMEFRTLSKRIAEALGAVAPTIPEP 304 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 Q++ +Q+P + Sbjct: 305 AA---------------------------------QSAATAPDQSPD------------W 319 Query: 362 P-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 P I ++Y + + + W+ + G +F T +++ + + I+++T + Sbjct: 320 PAIEPETYVHVSDRATLDAWIATIRAQGYVAFDTETTSLNEMQADLVGISLATAPGR--- 376 Query: 421 SFKVETIFIDLSVHT--SQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + + D + D+ + L E+L+ LK E++ LKIG N+KYD +L Sbjct: 377 ACYIPVAHKDGAADDLFGSDARAEGQLPLDEVLNALKPVLEDDAILKIGQNMKYDAKILA 436 Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 +GI++ +D MLMSY L +G H + ++++++L+++ + +L S K+++ D++ Sbjct: 437 AHGITVAPIDDTMLMSYALHAGLHGHGMDTLSERYLNHSPIPIRSLLGSGKAAVTFDRVP 496 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 ++ ++A E++++ L+LWL L+P+L ++ VYE L++P++ V+++ME G+ +D+D Sbjct: 497 VAEAVKYAAEDADITLRLWLTLKPQLHRAQVTTVYETLERPLVPVLARMERDGVLVDRDT 556 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ +S + ++ + LE I+ L+ FN+ SPKQLG+ILF ++ P G K KTG + T A Sbjct: 557 LRAMSGKFAQKMAGLESEIHALARRSFNVGSPKQLGEILFDEMGLPGGEKGKTGAYATGA 616 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE + ++ + +L+WRQLSK+KSTY D+L +HI+ T RVHT Y TGR + Sbjct: 617 DVLEDLAT-EHDLPARVLDWRQLSKLKSTYTDALQDHIDPDTGRVHTSYLQTGASTGRFS 675 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIP++++ G++IR AF++ P +L+S DYSQIELRILAH+A I L Q F + Sbjct: 676 SSDPNLQNIPVRSEEGRRIREAFVAAPGNRLVSLDYSQIELRILAHVAGIETLKQAFRDG 735 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH M A+E+F V + +++P++RR AK INF +IYGIS F LA LRIPR EA +I R Sbjct: 736 HDIHAMTASEMFNVPLAEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRGEAQGFIDR 795 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF RFPGI +Y++ T F +++GYV+T+FGR+IH EI + K RAAINAPIQG Sbjct: 796 YFERFPGIKDYMDATTAFAKEHGYVQTLFGRKIHTPEIAA-KGPRAGFARRAAINAPIQG 854 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AADI RRAMI + +++E L KMLLQ+HDEL+FEV E+ + + M+ A P Sbjct: 855 TAADIIRRAMIRMPEAIE--GLPCKMLLQVHDELIFEVAEDSVDRLIDVARAVMQGAADP 912 Query: 955 KINLRVPLKVNIKVSNNWQE 974 + L VPL V+ NW E Sbjct: 913 AVRLDVPLVVDAGQGRNWAE 932 >gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] Length = 931 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/988 (41%), Positives = 598/988 (60%), Gaps = 81/988 (8%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ + +H A Sbjct: 7 KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLQRYVEGNHGPDAPTHVA 66 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I E +G+EADDIIA Sbjct: 67 VIFDKGSHTFRNDMYDLYKANREAMPEDLRPQIPLTRDATKAFNIACKEKEGYEADDIIA 126 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A G TIIS+DKDLMQLV + D +K + ID E V +K+G+ PE++V + Sbjct: 127 TLAVQARAAGGRCTIISSDKDLMQLVGDGVEMLDAMKNKTIDREGVFEKFGVYPERVVDV 186 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+L+ +L A IKQ KRR+ +++ A+ RL Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDALLDRAEEIKQPKRRQTLIDNADQIRL 246 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 SRKLV L D P+ LE L + D + L+ FL +E Sbjct: 247 SRKLVQLDEDTPLDFTLEDLEVRDPDPDTLLGFLAEME---------------------- 284 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP--QKLFLERLQKLSQ 360 F +LS + + + + P + + + + Sbjct: 285 ----------------------------FRTLSKRIADVLGREAPVIEAPAVPDAPEAAD 316 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 P +Y + + +Q W+ ++ G + T +D ++ + I++ K Sbjct: 317 IPFEAGNYEHVSDAAALQVWIDQIYEFGYVAVDTETTGLDEMVAELVGISLCVQPGK--- 373 Query: 421 SFKVETIFIDL--SVHTSQDSTGKNTL------TKEILSYLKKFFENEHFLKIGHNIKYD 472 +I L HT D G L T+E L L E+ +KIG N+KYD Sbjct: 374 -----ACYIPLIHKTHTGDDLFGSEDLAEGQIPTEEALRMLTPMLEDPSIMKIGQNMKYD 428 Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 + + GI++ +D ML+SYV+ +G H + ++++++L +T K +L S KS++ Sbjct: 429 SKIFAQLGITVAPIDDTMLLSYVMHAGLHGHGMDALSERYLGHTPIPIKPLLGSGKSAVT 488 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 DK+ +Q +A E++++ L+LW L +P+L ++ VYE L++P++ V++ ME +GI+ Sbjct: 489 FDKVPLAQAVPYAAEDADITLRLWQLFKPQLHRIQVTKVYETLERPLVPVLAAMERSGIK 548 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 +D+D L ++S ++ + LE+ IY+L+G KFN+ SPKQLG+ILF ++ G K KTG Sbjct: 549 VDRDTLSRMSNAFAQKMAGLEDEIYELAGRKFNVGSPKQLGEILFDEMGLEGGKKGKTGA 608 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T A LE + ++ + IL+WRQLSK+KSTY D+L +HINK T RVHT YS+A Sbjct: 609 YATGADVLEDLAT-EHDLPGRILDWRQLSKLKSTYTDALQDHINKDTGRVHTSYSIAGAS 667 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRLAS +PNLQNIPI+++ G++IR AF++ K L++ DYSQIELRILAHIA I L Q Sbjct: 668 TGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGKVLVALDYSQIELRILAHIADIPELKQ 727 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F++ +DIH + A+E+FGV +++++P +RR AK INF +IYGIS F LA LRIPR+EA Sbjct: 728 AFKDGIDIHALTASEMFGVPLDEMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQ 787 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 +I RYF RFPGI Y++ TK F +++G+V+T+FGR+I+ EI + K +RAAIN Sbjct: 788 GFIDRYFERFPGIRTYMDNTKAFAKEHGFVQTLFGRKINTPEIGA-KGPRAGFAQRAAIN 846 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV---PEEEITTASQIIVH 946 APIQG+AAD+ RRAMI + +++D + MLLQ+HDEL+FEV E+ + A++ + Sbjct: 847 APIQGTAADVIRRAMIRMPAAIKD--IPATMLLQVHDELLFEVEKGAEDALIKAARDV-- 902 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A P + L V L V+ NW E Sbjct: 903 -MENASEPVVKLDVKLIVDAGKGANWAE 929 >gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601] gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601] Length = 935 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/986 (41%), Positives = 597/986 (60%), Gaps = 72/986 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML K ++++ +H A Sbjct: 6 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQKYVEDNAGPDAPTHVA 65 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I E++G+EADDIIA Sbjct: 66 VIFDKGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRRATEAFNIACKELEGYEADDIIA 125 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A + G VTIIS+DKDLMQLV + D +K +ID + V +K+G+ P+++V + Sbjct: 126 TLARQAREAGGRVTIISSDKDLMQLVGDGVEMLDAMKNRRIDRDGVFEKFGVFPDRVVDV 185 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+LE++L A IKQ KRR+ ++E E L Sbjct: 186 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEDLLDRAEEIKQPKRRQTLIEKREQIEL 245 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L + P+ L+ L + D + L+ FL +EF L R+A D +A PV Sbjct: 246 SKRLVQLDEETPLEFGLDDLEVRDPDPEVLLGFLAEMEFRSLTKRIADQLDAEA----PV 301 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + D T E A E TP+ +E Sbjct: 302 IPD-TTPEGANPA---------------------------EEGTPEMPAIE--------- 324 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 D+Y + +D+ ++ G + T ++ + I++ T Sbjct: 325 --PDTYIWVKTAEDLAPFIDAAHQRGWVAVDTETTGLNEMACDLVGISLCTEPG------ 376 Query: 423 KVETIFIDLSVHTSQDST--GKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKL 474 E +I L+ D G L + L LK E+ +KIG N+KYD Sbjct: 377 --EACYIPLAHRADSDGGLFGDGDLAEGQMPMQAALDLLKPLLEDPAVMKIGQNMKYDAK 434 Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 + RYG+ + +D MLMSY +++G H + ++++++LS+T KE+L S K D Sbjct: 435 IFARYGVRIAPIDDTMLMSYAMNAGLHGHGMDALSERYLSHTPIPIKELLGSGKKMKTFD 494 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 ++ ++A E++++ L+LW LL+P+L + VYE +++P++ V+++ME+ G+Q+D Sbjct: 495 QVPIEDAVKYAAEDADITLRLWTLLKPQLHRNHVTRVYETMERPLVPVLAEMEMAGVQVD 554 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +D L ++S S+ + +LE I++L+GE FN+ SPKQLG+ILF K+ G K KTG + Sbjct: 555 RDTLSRMSNAFSQKMAALEAEIHELAGESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYA 614 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A LE + ++ + +L+WRQLSK+KSTY D+L HINK T RVHT Y ++ TG Sbjct: 615 TGADVLEDLAT-EHELPARVLDWRQLSKLKSTYTDALQEHINKDTGRVHTSYVISGANTG 673 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP++++ G++IR AF++P K +++ DYSQIELRILAH+A+I L Q F Sbjct: 674 RLSSTDPNLQNIPVRSEEGRRIREAFVAPEGKTIVALDYSQIELRILAHMAEIDALKQAF 733 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DIH M A+E+F V +++++ ++RR AK INF +IYGIS F LA LRIPRSEA + Sbjct: 734 RDGQDIHAMTASEMFNVPMDEMTSEIRRQAKAINFGVIYGISGFGLARNLRIPRSEAQGF 793 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I RYF RFPGI Y++ T F +++ VET+FGR IH EI + K +RAAINAP Sbjct: 794 IDRYFERFPGIRTYMDDTVAFAKEHKRVETLFGRVIHTPEIAA-KGPRAGFAKRAAINAP 852 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV---PEEEITTASQIIVHSM 948 IQG+AADI RRAMI + ++E KL MLLQ+HDEL+FEV EE + +A++ + M Sbjct: 853 IQGTAADIIRRAMIRMPDAIE--KLPATMLLQVHDELIFEVEQGAEEALISAARTV---M 907 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A P + L VPL V+ +W E Sbjct: 908 EGAAEPVVKLDVPLVVDAGQGKSWAE 933 >gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] Length = 932 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/984 (40%), Positives = 596/984 (60%), Gaps = 70/984 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNML + ++ + + +H A Sbjct: 5 KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLQRYVEGNAGGDV-THVA 63 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I E++GFEADDIIA Sbjct: 64 VIFDKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEMEGFEADDIIA 123 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A + G TIIS+DKDLMQLV + D +K + ID++ V +K+G+ P+++V + Sbjct: 124 TLACQAREAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKTIDVDGVFEKFGVGPDRVVDV 183 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L A IKQ KRR+ ++E+ L Sbjct: 184 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAGEIKQPKRRQTLIEHRAQIEL 243 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L D+ + +E L + D L+ FL +EF L R++ +A P Sbjct: 244 SKRLVQLDCDMELDFTIEDLEVRDPEPETLLGFLAEMEFRTLTKRISGALGVEA----PA 299 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 V + T T+ +E+ P P Sbjct: 300 VPEPAAT----------------------------TASPEAEEHP--------------P 317 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST--------- 413 ++ + I + + +Q W+ + G + T ++ + + +++ Sbjct: 318 LSASEHVTIRDAETLQSWIDAIHARGVVAVDTETTGLNEMRADLVGVSLCVDPGRAAYLP 377 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 L KD DL ++ + G+ + L LK E+ LKIG N+KYD Sbjct: 378 LAHKDGGGAD------DLFGGEAKLAEGQLDF-ETALGMLKPVLEDPAVLKIGQNMKYDA 430 Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 +L R GI++ +D ML+SY L +G H + ++++++L +T K +L + KS+I Sbjct: 431 KILARNGITVAPIDDTMLLSYALHAGLHGHGMDALSERYLDHTPIPIKTLLGTGKSAITF 490 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 D + + ++A E++ + L+LW L+P+L + ++ VYE +++PM+ V+++ME+ GI++ Sbjct: 491 DFVPIEEATKYAAEDAEITLRLWQRLKPRLHLAQVTRVYEWMERPMVPVLAEMEMRGIKV 550 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D+D L ++S ++ + LE I++L+GE FN+ SP QLG+ILF K+ F G K+G++ Sbjct: 551 DRDTLSRMSNAFAQKMAGLEAEIHELAGESFNVGSPAQLGEILFEKMGFEGGKTGKSGKY 610 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T A LE + ++ + + +L+WRQLSK+KSTY D+L +HIN T RVHT YS+A T Sbjct: 611 STPADVLEDLAT-EHDLPRRVLDWRQLSKLKSTYTDALQDHINPETGRVHTSYSIAGANT 669 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRLAS +PNLQNIP++++ G++IR AF++ P L+S DYSQIELRILAHIA I L Sbjct: 670 GRLASTDPNLQNIPVRSEEGRRIREAFVAEPGHVLVSLDYSQIELRILAHIAGIDALKTA 729 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F + LDIH M A+E+F V +++++P++RR AK INF +IYGIS F LA LRIPR+EA Sbjct: 730 FRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQA 789 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I YF RFPGI Y++ T F +++ YV+T+FGR+IH EI + K +RAAINA Sbjct: 790 FIDTYFERFPGIRAYMDDTVAFAKEHKYVQTLFGRKIHTPEIGA-KGPQAGFAKRAAINA 848 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQG+AADI RRAM+ + ++ D L +MLLQ+HDEL+FEV E+ + + ME Sbjct: 849 PIQGTAADIIRRAMVRMPAAIAD--LPARMLLQVHDELIFEVEEDAVDRVIPAVRQVMEG 906 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A P ++L VPL V+ +W E Sbjct: 907 AAAPVVHLDVPLTVDAGQGRSWAE 930 >gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654] gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654] Length = 932 Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/981 (41%), Positives = 595/981 (60%), Gaps = 64/981 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS++I+RA++A P L+RK DGLP+ A++GFCNML + ++++ +H A Sbjct: 5 KGCHLHLIDGSAYIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVEDNTGPDAPTHVA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V+FD + TFRN++Y YKANR ++PE L PQ+PL R AT AF I E++G+EADDIIA Sbjct: 65 VVFDKGSHTFRNDMYDQYKANRDEMPEDLRPQIPLTREATIAFNIACKEMEGYEADDIIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T + + G VTI+S+DKDLMQLV + D +K ++ID E VI+K+G+ PE++V + Sbjct: 125 TLACMGREAGGQVTILSSDKDLMQLVGDGVEMLDPMKNKRIDREGVIEKFGVGPERVVDV 184 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L A IKQ KRRE + + E L Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLETLLDRAEEIKQPKRRETLTQKREQIEL 244 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L + PI L+ L ++D + +L+ FL +EF L R+A D +EP Sbjct: 245 SKRLVQLDCETPIDFTLDDLEVQDPDPDKLMPFLAKMEFRTLTRRIA-----DKLGVEP- 298 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 L I E K + ++ P+ Sbjct: 299 -LAIPEPEAK------------------------DAPEGDAPDAPE-------------- 319 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD---D 419 I+ + Y + + + + +W+ + G + T +++ ++ I ++ + + Sbjct: 320 IDPEKYEWVKDMEALDRWIALIRDHGYVAVDTETTSLNEMQAEFAGICLAVVPGEACYIP 379 Query: 420 TSFKV---ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 KV E +F D + Q S ++L+ LK E+ LKI N KYD + Sbjct: 380 VGHKVGDGEGLFADDKLAEGQLSL------DDVLAALKPVLEDPAILKIFQNAKYDTKIF 433 Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 R+G+++ +D MLMSY + SG +H + ++++ +L +T K +L + KS+I DK+ Sbjct: 434 SRHGLNVAPIDDTMLMSYAMFSGLHNHGMDTLSEHYLGHTPISIKTLLGTGKSAITFDKV 493 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 ++A E+++V L+LW L +P+L EK+ VYE L++P++ V++QME+ G+Q+D+D Sbjct: 494 KIEDAVKYAAEDADVTLRLWQLFKPRLHREKVTTVYETLERPLVPVLAQMEMHGVQVDRD 553 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L ++S ++ + LE I++L+G+ FN+ SPKQLG+ILF KL G K KTG + T Sbjct: 554 TLSRMSNAFAQKMAGLEAEIHELAGQSFNVGSPKQLGEILFDKLGLEGGKKGKTGAYATG 613 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 A LE + + + +L+WRQLSK+KSTY D+L HI+ T RVHT Y TGRL Sbjct: 614 ADVLEDL-AAQHDLPARVLDWRQLSKLKSTYTDALQTHIDPDTGRVHTSYLQTGASTGRL 672 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 AS +PNLQNIPI+T+ G++IR AF++P K L+S DYSQIELRILAH+A I + Q F + Sbjct: 673 ASTDPNLQNIPIRTEEGRRIREAFVAPEGKVLVSLDYSQIELRILAHVAGIESMKQAFRD 732 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIH A+E+F V +++++P +RR AK INF +IYGIS F LA LRI R EA +I Sbjct: 733 GEDIHAATASEMFDVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRIARGEAQGFID 792 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 RYF ++PGI EY++ T F +++G+V T+FGR+IH EIN+ K RAAINAPIQ Sbjct: 793 RYFEKYPGIKEYMDDTVAFAKEHGHVATLFGRKIHTPEINA-KGPHAGFARRAAINAPIQ 851 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 GSAADI RRAMI + ++ L KMLLQ+HDEL+FEV E + A +I ME A Sbjct: 852 GSAADIIRRAMIRMPDAIS--GLPVKMLLQVHDELIFEVEEGGVDKAVSVIRDVMEGAAD 909 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 P + L +PL V+ NW E Sbjct: 910 PAVKLDIPLVVDAGQGANWAE 930 >gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37] gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37] Length = 934 Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/987 (40%), Positives = 592/987 (59%), Gaps = 76/987 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS++I+RAF+A P L+RK DGLP+ A++GFCNML + ++++ +H A Sbjct: 7 KGCHLHLIDGSAYIFRAFHALPPLTRKSDGLPIGAVSGFCNMLHRYVEDNTGPDAPTHVA 66 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V+FD + TFRN++Y DYKANR +PE L PQ+PL R +T+AF I EI+GFEADDI+A Sbjct: 67 VVFDKGSHTFRNDLYHDYKANREAMPEELRPQIPLTRESTEAFNIACKEIEGFEADDIMA 126 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T +A + G VTI+S+DKDLMQLV + D +K ++ID E V++K+G+ PE++V + Sbjct: 127 TLACMAREAGGRVTILSSDKDLMQLVGDGVEMLDPMKNKRIDREGVMEKFGVGPERVVDV 186 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L A IKQ KRRE ++E L Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEELLDRAGEIKQPKRRETLIEKRAQIEL 246 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S+KLV L + + L+ L +++ + L++FL +EF L R+A Sbjct: 247 SKKLVQLDCGMDLPFTLDDLEVKEPDPDTLLAFLTKMEFRTLTKRIA------------- 293 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 EN G+ + P+ E +P Sbjct: 294 -------ENAGV---------------------------EAPAIPEPEQQETPDAAPDWP 319 Query: 363 -INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 I+ +Y + + + +W+ + +G+ + T ++ + I+++ Sbjct: 320 AIDPAAYECVQDMAALDRWIARAMDLGTVAVDTETTGLNEMLCDLVGISLAVAPG----- 374 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLT-----------KEILSYLKKFFENEHFLKIGHNIK 470 E +I L+ H ++D G+ ++ L LK E+ +KIG N+K Sbjct: 375 ---EACYIPLA-HLAEDG-GEGLFASDAKAEGQIPMQQALDALKPLLEDASVMKIGQNMK 429 Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSS 527 YD + RYGI + +D MLMSY L G H + ++++++L++T K++L + KS Sbjct: 430 YDAKIFSRYGIEIAPIDDTMLMSYALHGGEHQHGMDTLSERYLAHTPIPIKDLLGTGKSQ 489 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 I D++ + +A E++++ L+L L +P+L + VYE L++P++ V+ ME+ G Sbjct: 490 ITFDRVPLDKATGYAAEDADITLRLALTFKPQLHRAHVTRVYETLERPLVPVLKAMEMRG 549 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I++D+ L ++S + ++ + LEE I+ L+GEKFN+ SP QLGDILF K+ P G + K Sbjct: 550 IKVDRATLSRMSGKFAQKMAELEEEIHALAGEKFNVGSPAQLGDILFEKMSLPGGKRGKN 609 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G++ T A LE + ++ + +L+WRQLSK+KSTY D+L HIN T RVHT YS+A Sbjct: 610 GKYSTPADVLEDLAT-EHDLPGRVLDWRQLSKLKSTYTDALQEHINPDTGRVHTSYSIAG 668 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 TGRLAS +PNLQNIP++++ G++IR AF++P L+S DYSQIELRILAH+A I L Sbjct: 669 ANTGRLASNDPNLQNIPVRSEEGRRIREAFVAPEGHTLVSLDYSQIELRILAHMADIDAL 728 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 Q F + LDIH M A+E+F V +++++P +RR AK INF +IYGIS F LA LRIPR+E Sbjct: 729 KQAFRDGLDIHAMTASEMFNVPLDEMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRAE 788 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A +I RYF RFPGI +Y++ T F ++ VET+FGR IH EI + K +RAA Sbjct: 789 AQGFIDRYFERFPGIKQYMDDTVKFANEHKRVETMFGRVIHTPEIGA-KGPRAGFAKRAA 847 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQG+AADI RRAM+ + ++ KL KMLLQ+HDEL+FEV + + Sbjct: 848 INAPIQGTAADIIRRAMVRMPDAIA--KLPAKMLLQVHDELIFEVEDGAAGDLIDVAREV 905 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ AC P + L VPL V+ NW E Sbjct: 906 MQNACDPVVKLDVPLVVDAGQGANWAE 932 >gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B] gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B] Length = 935 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/983 (40%), Positives = 589/983 (59%), Gaps = 68/983 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML+K +++++ +H A Sbjct: 8 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFKQVEDNKGPDAPTHVA 67 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD+ +FRN++Y YKANRP PE L+PQ PL R AT+AF I EI+GFEADDIIA Sbjct: 68 VIFDHSGKSFRNDMYDLYKANRPPAPEDLVPQFPLTREATRAFNIACKEIEGFEADDIIA 127 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A + G VTIIS+DKDLMQLV + D +K ++ID + V +K+G+ P+++V + Sbjct: 128 TLACQAREAGGRVTIISSDKDLMQLVGDGVEMLDAMKNKRIDSDGVREKFGVGPDRVVDV 187 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ E+G+LE++L A IKQ KRR+ ++E E + Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEDLLDRAEEIKQPKRRQTLIEKREQIEM 247 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L D+ + L+ L + D + L+ FL +EF L R+A +A I Sbjct: 248 SKRLVQLDCDMELDFTLDDLEVRDPDAETLLGFLAEMEFRTLSKRMADQLGREAPTIPE- 306 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 A T + F S ++Y Sbjct: 307 ------------APSTAAAALELPEAPGFDS-------------------------AEYT 329 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 D+ T +QQW+ + G + T ++ + + I + + Sbjct: 330 TVRDAET-------LQQWIDLIREHGYVAVDTETTGLNEMIADLVGICLCVV-------- 374 Query: 423 KVETIFIDLS--VHTSQDSTGKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKL 474 + ++ L+ S D G + L + L LK E++ LKIG N+KYD Sbjct: 375 PGQACYVPLTHKAGNSDDLFGSDDLAEGQMPLETALEMLKPVLEDDAILKIGQNMKYDAK 434 Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 + R GI + +D ML+SY L G H + ++++++L + K +L S KS+I D Sbjct: 435 IFARNGIDITPIDDTMLLSYALHGGMHGHGMDTLSERYLDHQPIPIKSLLGSGKSAITFD 494 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 ++ +A E++++ L+LW +P+L +++ VYE L++P++ V++QME GI++D Sbjct: 495 RVPIDDATPYAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLVPVLAQMEQNGIKVD 554 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +D L ++S S+ + +LE I++L+GE FN+ SPKQLG+ILF KL P G K KTG + Sbjct: 555 RDTLSRMSNAFSQKMAALEAEIHELAGESFNVGSPKQLGEILFDKLSLPGGKKGKTGAYA 614 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A LE + ++ + +L+WRQLSK+KSTY D+L HI+ T RVHT Y TG Sbjct: 615 TGADILEDLAT-EHELPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYLQTGANTG 673 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RLAS +PNLQNIP++++ G++IR AF++ L+S DYSQIELRILAH+A I L Q F Sbjct: 674 RLASSDPNLQNIPVRSEEGRRIREAFVAEEGNVLLSLDYSQIELRILAHVAGIDALKQAF 733 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DIH M A+E+F V +E+++P++RR AK INF +IYGIS F LA LRIPR EA + Sbjct: 734 ADGHDIHAMTASEVFDVPLEEMTPEIRRKAKAINFGVIYGISGFGLARNLRIPRGEAQGF 793 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I RYF RFPGI +Y++ T NF + +GYV+T+FGR+IH EI + K + +RAAINAP Sbjct: 794 IDRYFERFPGIRQYMDDTVNFAKDHGYVQTLFGRKIHTPEI-AAKGPRASFAKRAAINAP 852 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AAD+ RRAM+ + ++ L +MLLQ+HDEL+FEVPE+ + + ME A Sbjct: 853 IQGTAADVIRRAMVRMPDAIA--HLPARMLLQVHDELLFEVPEDHVDETISVAREIMEGA 910 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 P +++ V L V+ NW E Sbjct: 911 ADPAVHMDVKLVVDAGRGQNWAE 933 >gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] Length = 933 Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/983 (41%), Positives = 598/983 (60%), Gaps = 70/983 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML K ++ + +H A Sbjct: 8 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQKYVEGNAGPDAPTHVA 67 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I E++G+EADDIIA Sbjct: 68 VIFDKGSHTFRNDLYDLYKANREAMPEDLRPQMPLTREATKAFNIACKELEGYEADDIIA 127 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A + G VTI+S+DKDLMQLV + D +K ++ID + V +K+G+ PE++V + Sbjct: 128 TLAVQAREAGGQVTIVSSDKDLMQLVGDGVEMLDAMKNKRIDRDGVFEKFGVGPERVVDV 187 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+LE++L A IKQ KRR+ ++E + L Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLESLLDRAEEIKQPKRRQTLIEKRDQIEL 247 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S+KLV L + P+ L+ L ++D L+ FL +EF L R+A +A PV Sbjct: 248 SKKLVQLDENTPLDFTLDDLEVKDPEPDTLLGFLAEMEFRTLTKRIADKLGAEA----PV 303 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + +D + ++ + P Sbjct: 304 I-------------------------------ADAPAPVDEPEA------------ETIP 320 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + Y + + +Q+W+ + G + T ++ + + I++ Sbjct: 321 FDAAKYECVRDAGALQKWIDQAYERGWVAVDTETTGLNEMIADLVGISLCIEPG------ 374 Query: 423 KVETIFIDLSVHTS--QDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKL 474 E +I L+ S D G + L + E L+ LK FE+ LKIG N+KYD Sbjct: 375 --EACYIPLTHRESATDDLFGSDALAEGQMPLDEALTLLKPVFEDSSILKIGQNMKYDAK 432 Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 + RYG+++ +D MLMSY + G+ H + ++++++LS+T K +L S KS+I D Sbjct: 433 IFARYGVNVVPIDDTMLMSYAMHGGKHGHGMDTLSERYLSHTPIPIKPLLGSGKSAITFD 492 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 K+ + +A E++++ L+LW L +P+L ++ VYE L++P++ V+++ME+ GI++D Sbjct: 493 KVPIDEATAYAAEDADITLRLWKLFKPQLHQVQVTTVYETLERPLVPVLAEMEMNGIKVD 552 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +D+L ++S ++ + LE I++L+GE FN+ SP QLG+ILF K+ G K KTG++ Sbjct: 553 RDVLSRMSNAFAQKMAGLEAEIHELAGENFNVGSPAQLGEILFDKMGLEGGKKGKTGKYS 612 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A LE + ++ + + +L+WRQLSK+KSTY D+L HIN T RVHT YS+ TG Sbjct: 613 TGADILEDLAT-EHELPRRVLDWRQLSKLKSTYTDALQTHINPDTGRVHTSYSITGANTG 671 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RLAS +PNLQNIP++T+ G++IR AFI+ P L+S DYSQIELRILAHIA I L Q F Sbjct: 672 RLASTDPNLQNIPVRTEEGRRIRGAFIAEPGNVLVSLDYSQIELRILAHIADIPALKQAF 731 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + LDIH M A+E+F V +++++P++RR AK INF +IYGIS F LA LRIPR+EA + Sbjct: 732 ADGLDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGF 791 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I RYF RFPGI Y++ T F +++GYV+T+FGR+IH EIN+ K + RAAINAP Sbjct: 792 IDRYFERFPGIRRYMDDTVAFAKEHGYVQTLFGRKIHTPEINA-KGPHAGFSRRAAINAP 850 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AAD+ RRAM+ + ++ + L KMLLQ+HDEL+FEV E + I ME A Sbjct: 851 IQGTAADVIRRAMVRMPGAI--NGLPAKMLLQVHDELLFEVAEGAVDETIGIARDVMEGA 908 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 P + L + L + NW E Sbjct: 909 ADPAVKLDIKLVADAGQGANWAE 931 >gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] Length = 940 Score = 758 bits (1957), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/993 (42%), Positives = 592/993 (59%), Gaps = 80/993 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSR---------KHDGLPVNAIAGFCNMLWKLLQN 51 + ++ L+LVDGS++I+RAF+ +L R K DG P +A+ GFCNMLWKL+ + Sbjct: 7 LGPDSRLYLVDGSAYIFRAFH---VLDRHAGGSERFQKKDGTPTSAVFGFCNMLWKLVSD 63 Query: 52 SR---KESIA--SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106 + +E I +HFAV+FD+ +FRN +Y +YKANR PE L+PQ PLVR AT+AFG Sbjct: 64 AHDAAQEEIGQPTHFAVVFDHSGESFRNALYDEYKANRSAPPEDLVPQFPLVRDATRAFG 123 Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE 166 +P +E+ G+EADDIIAT+ +AE++G I+S+DKDLMQL++ T ++D +K ID + Sbjct: 124 LPCLEMAGYEADDIIATHARLAEEKGAETVIVSSDKDLMQLITDRTVMFDPMKNRIIDRQ 183 Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226 VI+K+G PE+M+ +QAL GDS DN+PG+PGIG KTAA LL++YG+L+ +L A IKQ Sbjct: 184 AVIEKFGAGPERMIDMQALMGDSTDNVPGVPGIGPKTAAQLLEDYGSLDALLDRADEIKQ 243 Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK-ALEFTKLI 285 KKRRE ++ + E A LSR+LV L VP+ E L L + L+ FL+ +EF L Sbjct: 244 KKRREMLIAHREDALLSRQLVTLDRHVPVEEAPEDLGLSPFDHAALVRFLEDEMEFNTLP 303 Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345 R+ E L++ TTE A+ Sbjct: 304 KRIR----------EAGGLEVPTTEASPAAV----------------------------- 324 Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405 PI+ + Y I + K ++ + + E G + TD ++ + Sbjct: 325 ----------------PIDQNGYEIIFDPKILRALMAEAEEHGIIAIDTETDNLEGMKAN 368 Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465 I+ S + K V DLS+ + S + T L LK + LK+ Sbjct: 369 LCGISFSIVPGKA-YYVPVGHGQTDLSLDDPEHSQQMSEATA--LDILKPVLLDPSILKV 425 Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS-HDIASIAQKWLSYT---RKEIL 521 G N+KYD L+L I + G++D ML+SY D G +S H + ++++ L + KEI+ Sbjct: 426 GQNLKYDLLILRERDIDVVGYDDTMLLSYAADCGFASLHGMDELSKRHLGHEPIPYKEIV 485 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + K + +A E+++V L+L +L+ + I ++ VYE +D+P++ V++ Sbjct: 486 GTGKKQKTFGDVPIKDAYIYAAEDADVTLRLHTILKSRAIESQVYTVYETMDRPLVSVIT 545 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME GI++D+D L +S E ++ + + E ++D++GE+FNL+SPKQ+GDILF KL P Sbjct: 546 DMERAGIKVDRDRLSALSGEFAQRMAAHEAAVHDIAGERFNLASPKQIGDILFGKLGLPG 605 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 G KTKTG W T A LE + I + IL R L+K+K TY D+L I+ +T RVHT Sbjct: 606 GKKTKTGAWSTAADTLETLAADGAEIAQEILSHRGLAKLKGTYTDALSESIHPKTGRVHT 665 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 +SLAST TGRL+S +PNLQNIPI+T+ G+KIR AFI LISADYSQIELR+LAHI Sbjct: 666 SFSLASTTTGRLSSNDPNLQNIPIRTEDGRKIREAFIPEDGNVLISADYSQIELRLLAHI 725 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 A+I PL + F LDIH M AAE+FGV +E + P +RR AK INF IIYGIS F LA L Sbjct: 726 AEIGPLIEAFHQGLDIHAMTAAEVFGVPLEGMDPSIRRQAKAINFGIIYGISAFGLARNL 785 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I R EA+ +IKRYF RFPGI Y+++T R +GYVET+FGRR H I + + +IR Sbjct: 786 GIGRDEASLFIKRYFERFPGIKAYMDETIEGARVHGYVETLFGRRSHTPNIKAKQPNIRM 845 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER AINAPIQGSAADI +RAMI V +L H+L+ KMLLQ+HDELV E P ++ + Sbjct: 846 GAERQAINAPIQGSAADIVKRAMIRVPAALAAHRLSAKMLLQVHDELVVECPADQADETA 905 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ ME A P ++L VPL V +W++ Sbjct: 906 AVLKDVMEGAAGPALSLSVPLVVEAGQGASWEQ 938 >gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] Length = 939 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/976 (39%), Positives = 603/976 (61%), Gaps = 53/976 (5%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSR---KESIASHFA 62 H++L+DGS +I+RA+YA P L+RK DGLPV A++GFCNML+K L+ SR K +HFA Sbjct: 8 HIYLIDGSGYIFRAYYALPPLTRKSDGLPVGAVSGFCNMLYKFLEESRSLDKVDRPTHFA 67 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD FRN+IY +YKANR PE L+PQ +R A +AF I +E+ +EADD+IA Sbjct: 68 VIFDTARKNFRNDIYKEYKANRQDTPEDLIPQFSYIRKAVEAFNILGVELANYEADDLIA 127 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 TY A K+ VTIIS+DKDLMQLV T + DT+K++ I E V +K+G+ P+K++ + Sbjct: 128 TYKEQASKKNIKVTIISSDKDLMQLVDENTFMMDTMKDKYIGKEEVKEKFGVYPDKVIDV 187 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 Q+L GDS DNIPG+PGIG KTAA L+ ++G+LE +L NAS IKQ KRR+ +L+ + A + Sbjct: 188 QSLAGDSSDNIPGVPGIGIKTAAELINQFGSLEKVLENASSIKQPKRRQTLLDNKDKALI 247 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S+KLV L+ DVP+ L+ L+ + +++ FL+ +EF +L ++ + Y + P Sbjct: 248 SKKLVTLKKDVPVKTSLDEFALKSIDPDKILKFLQEMEFGRLFKKLESDYGKFSGKASP- 306 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 TE+K ++E+ L D P+K+ ++ Sbjct: 307 --QSKLTESKEPSVES-------------GKLPD---------VPEKIIEKK-------- 334 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 ++ I + +++ ++K + G + T+++D + + I++S Sbjct: 335 -----FSLIFDMSELKSVLKKSDEKGLFAIDTETNSLDTMVANLVGISLSYRPG------ 383 Query: 423 KVETIFIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 E +I + D + K L K++LS +K + E+ K+G NIKYD + ++GI Sbjct: 384 --EAFYIPIGHQNKSDPSIKKQLKLKDVLSVIKPYLEDPTVKKVGQNIKYDYRIFLKHGI 441 Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 M ED MLMSY LD+G++ H + +++ L++ + K++ KS + D + Q Sbjct: 442 QMNSIEDTMLMSYSLDAGKNRHGMDLLSELHLNHKTISFKDVAGIGKSQVTFDFVDIEQA 501 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +++A E++++ L+L+ + +L E +L VY+ L+KP+I ++S +E GI+ID+++L+++ Sbjct: 502 KDYACEDADITLRLYKMFEKRLFNENVLGVYDNLEKPLIKILSSVENNGIKIDKNILEKL 561 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S + + +LE+ I+ ++ E+FN+ SPKQLGD+++ KLK KTK G + T LE Sbjct: 562 SKKFEIEIQNLEKKIFKIAKEEFNIGSPKQLGDVIYEKLKIAGSKKTKKGNFATNVAVLE 621 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 + + K +L WRQ SK+K+TY D+LP +IN +++RVHT + LA+T TGRLAS P Sbjct: 622 DLASQGHEFPKLVLNWRQKSKLKNTYTDTLPTYINAKSKRVHTSFLLAATTTGRLASANP 681 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPIK G++IR AF+S KLISADYSQIE+RILAH+ + L + F N DIH Sbjct: 682 NLQNIPIKNIEGKEIRSAFVSDKNSKLISADYSQIEMRILAHMGDVKELKKAFLNKEDIH 741 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 + A++IF V+++KV MRR AK INF IIYGIS + LA Q+ + SEA +++K YF + Sbjct: 742 TLTASQIFDVSLKKVDEDMRRKAKAINFGIIYGISSYGLAKQISVSNSEAENFLKSYFGK 801 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 FP I +++ + F R+NGYV+T+F R+ H+ IN ++R ERA INAPIQG+AAD Sbjct: 802 FPEIRDFMNENITFCRKNGYVKTLFDRKCHFPNINDKNHTLRTFQERACINAPIQGTAAD 861 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 + R AMI + K + ++ +L+Q+HDEL+ E E+++++ Q I H ME A P + Sbjct: 862 LLRLAMIQIDKKISAKEIPASLLIQVHDELLLECKEKDVSSVQQKIAHEMENASEPLVKF 921 Query: 959 RVPLKVNIKVSNNWQE 974 +PL V++K NW E Sbjct: 922 SIPLTVDVKSGKNWSE 937 >gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] Length = 933 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 406/983 (41%), Positives = 593/983 (60%), Gaps = 68/983 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DG+P+ A++GFCNML + + +H A Sbjct: 6 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGMPIGAVSGFCNMLQRYVDGDHGPDAPTHLA 65 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF IP E++G+EADDIIA Sbjct: 66 VIFDKGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRQATEAFNIPCKELEGYEADDIIA 125 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A K G VTI+S+DKDLMQLV + D +K ++ID E V +K+G+ PE++V + Sbjct: 126 TLACQARKAGGRVTIVSSDKDLMQLVGDGVEMLDAMKNKRIDREGVFEKFGVYPERVVDV 185 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L A IKQ KRR+ ++E + L Sbjct: 186 QALAGDSVDNVPGAPGIGIKTAALLINEFGDLETLLDRAEEIKQPKRRQTLIEKRDQIEL 245 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S+KLV L P+ L+ L L D + +L+SFL +EF L R+A + +EP Sbjct: 246 SKKLVQLDCKTPLDFTLDDLELRDPDPDKLLSFLAEMEFRTLSKRIA-----EKLGVEPP 300 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 V+ + P Sbjct: 301 VIADAPAPVA----------------------------------------ADDPPADETP 320 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + Y + + +++W+ + G + T ++ + + I++ Sbjct: 321 FDASKYECVRDAAALRKWIDQAHERGWLAVDTETTGLNEMVADLVGISLCIEPG------ 374 Query: 423 KVETIFIDLSVH--TSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKL 474 E +I L+ S D G + L + E L LK E+ LKIG N+KYD Sbjct: 375 --EACYIPLTHRDGASDDLFGSDALAEGQMPLDEALKLLKPVLEDPSILKIGQNMKYDAK 432 Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 + RYG+ + +D MLMSY + +G H + ++++++L +T K +L S KS+I D Sbjct: 433 IFARYGVDVAPIDDTMLMSYAMHAGEHGHGMDTLSERYLGHTPIPIKPLLGSGKSAITFD 492 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 K+ + +A E++++ L+LW L +P+L ++ VYE L++P++ V++QME+ GI++D Sbjct: 493 KVPIDEATAYAAEDADITLRLWKLFKPQLHRVQVTTVYETLERPLVPVLAQMEMHGIKVD 552 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +D+L ++S ++ + +LE I++L+GE FN+ SP QLG+ILF K+ G K KTG++ Sbjct: 553 RDVLSRMSNAFAQKMAALEAEIHELAGETFNVGSPAQLGEILFEKMGLEGGKKGKTGKYS 612 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A LE + ++ + + +L+WRQLSK+KSTY D+L HIN T RVHT Y++ TG Sbjct: 613 TGADVLEDLAT-EHELPRKVLDWRQLSKLKSTYTDALQTHINPDTGRVHTSYAITGANTG 671 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RLAS +PNLQNIP++T+ G++IR AF++ P L+S DYSQIELRILAHIA I L Q F Sbjct: 672 RLASTDPNLQNIPVRTEEGRRIREAFVAEPGNVLVSLDYSQIELRILAHIADIPALKQAF 731 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + LDIH M A+E+F V +++++P++RR AK INF +IYGIS F LA LRIPR+EA + Sbjct: 732 ADGLDIHAMTASEMFDVPLDEMTPEIRRKAKAINFGVIYGISGFGLARNLRIPRAEAQGF 791 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I RYF RFPGI Y++ T F +++GYV+T+FGR+IH EIN+ K RAAINAP Sbjct: 792 IDRYFERFPGIRRYMDDTIAFAKEHGYVQTLFGRKIHTPEINA-KGPHAGFARRAAINAP 850 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AAD+ RRAM+ + ++++ L KMLLQ+HDEL+FEV E+ + +I ME A Sbjct: 851 IQGTAADVIRRAMVRMPEAID--GLPAKMLLQVHDELLFEVAEDAVDQTIEIARDVMENA 908 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 P + L V L V+ NW E Sbjct: 909 PDPAVKLDVKLTVDAGKGANWAE 931 >gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193] gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193] Length = 935 Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/986 (40%), Positives = 587/986 (59%), Gaps = 74/986 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML+K +++++ +H A Sbjct: 8 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFKQVEDNKGPDAPTHVA 67 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD+ +FRN++Y YKANRP PE L PQ PL R AT+AF I E++GFEADDIIA Sbjct: 68 VIFDHSGKSFRNDMYELYKANRPPAPEDLRPQFPLTRDATRAFNIACKEVEGFEADDIIA 127 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T + A G TIIS+DKDLMQLV + D +K ++ID E V +K+G+ P+++V + Sbjct: 128 TLAHQARDAGGRCTIISSDKDLMQLVGGGVEMLDAMKNKRIDSEGVHEKFGVGPDRVVDV 187 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L A IKQ KRR+ ++E + + Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAEEIKQPKRRQTLIEKRDQIEM 247 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L + + LE L + D + L+ FL +EF L R+A +A I V Sbjct: 248 SKRLVQLDCAMELDFSLEDLEVLDPDPEVLLGFLADMEFRTLTKRMADQLGREAPAIPEV 307 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 +T A ET I Sbjct: 308 -----STSGGSAAPETPI---------------------------------------AVA 323 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS---------- 412 + + Y I + +Q+W+ + G + T +DA + +++ Sbjct: 324 FDAEKYQCISDAAGLQEWIDQAYERGYVAIDTETTGLDAMVVDLVGVSLCVEPGTACYIP 383 Query: 413 -TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471 T Q D F E + + G+ L ++ L LK E+ LKIG N+KY Sbjct: 384 LTHKQGGDDLFGGEGL-----------AEGQMPL-EQALEMLKPMLEDPAVLKIGQNMKY 431 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 D +LHRYGI + +D MLMSY L +G +H + +++++L + K +L + KS+I Sbjct: 432 DAKILHRYGIDVAPIDDTMLMSYALHAGEHNHGMDILSERYLDHKPIPIKPLLGTGKSAI 491 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D++ + +A E++++ L+LW +P+L ++ VYE L++P++ V+++ME GI Sbjct: 492 TFDRVPIADAVPYAAEDADITLRLWQHFKPELHQRQVTVVYETLERPLVPVLAEMERNGI 551 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ++D+D L ++S ++ + +LE+ I+ L+G+ FN+ SPKQLG+ILF KL+ P G K KTG Sbjct: 552 KVDRDTLSRMSNAFAQKMAALEDEIHALAGQPFNVGSPKQLGEILFDKLELPGGKKGKTG 611 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T A LE + ++ + +L+WRQLSK+KSTY D+L +HIN T RVHT Y Sbjct: 612 AYATGADILEDLAT-EHALPALVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYIQTGA 670 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGR+AS +PNLQNIP++++ G++IR AF+ L+S DYSQIELRILAH+A I L Sbjct: 671 NTGRMASSDPNLQNIPVRSEEGRRIREAFVPEQGNVLLSLDYSQIELRILAHVAGIDALK 730 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIH M A+E+F V +E+++ +RR AK INF +IYGIS F LA LRIPR+EA Sbjct: 731 AAFAAGQDIHAMTASEMFDVPMEEMTADIRRQAKAINFGVIYGISGFGLARNLRIPRAEA 790 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +I RYF RFPGI Y+++T F +++GYV+T+FGR+IH EI + K +RAAI Sbjct: 791 QGFIDRYFERFPGIRAYMDRTVEFAKEHGYVQTLFGRKIHTPEIAA-KGPRAGFAKRAAI 849 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AAD+ RRAM+ + ++ L +MLLQ+HDEL+FEVPE + + M Sbjct: 850 NAPIQGTAADVIRRAMVKMPPAIA--HLPARMLLQVHDELLFEVPEAAVEETIETARRVM 907 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A P ++L V L V+ NNW E Sbjct: 908 ENAADPALHLDVKLSVDAGRGNNWAE 933 >gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62] gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62] Length = 932 Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/985 (40%), Positives = 599/985 (60%), Gaps = 73/985 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML + ++ + + +H A Sbjct: 6 KGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQRYVEGNAGSDV-THVA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I EI G+EADDIIA Sbjct: 65 VIFDKGSHTFRNDMYDQYKANRDAMPEDLRPQMPLTRRATEAFNIACHEIAGYEADDIIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T + + G TIIS+DKDLMQLV ++D +K I +E V +K+G+ P+++V + Sbjct: 125 TLARQSREAGGRCTIISSDKDLMQLVGGGVEMFDAMKNRTIGVEGVEEKFGVGPDRVVDV 184 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L A IKQ KRR+++ + L Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLINEFGDLETLLDRAEEIKQPKRRQSLTDNRAQIEL 244 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L + P+ L+ L + D L++FL +EF L R+A T +A Sbjct: 245 SKRLVQLDLNTPLEFTLDDLEVRDPVPEDLLAFLAEMEFRTLTTRIANTLGAEAP----- 299 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 DIN T + ++ + P+ Sbjct: 300 --DINDTP------------------------AAVAGAVDVPEAPE-------------- 319 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ D Y + +T +Q W+ ++ G + T +++ ++ + I++ + Sbjct: 320 IDADQYEWVQDTDALQVWIDRIYERGYVAVDTETTSLNEMRAELVGISLCV------KAG 373 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + I I+ + D G + L + +LS LK +++ LKIG N+KYD + Sbjct: 374 QACYIPINHKEGANDDLFGSDKLAEGQMAEAVVLSMLKPMLQDDSILKIGQNMKYDAKIF 433 Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 R G+ + +D MLMSY ++G +H + +++ + L +T K +L + KS+I D++ Sbjct: 434 ARCGVDVAPIDDTMLMSYAQNAGLHNHGMDTLSDRLLGHTPIPIKSLLGTGKSAITFDRV 493 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 ++ ++A E++++ L+LW L+P+L V+ + VYE L++P++ V+++ME+TGI++D+D Sbjct: 494 DVAEAVKYAAEDADITLRLWQHLKPQLHVKGVTTVYETLERPLVPVLAEMEMTGIKVDRD 553 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L ++S ++ + LE I++L+G FN+ SPKQLG+ILF ++ G K KTG + T Sbjct: 554 TLSRMSNAFAQKMAGLEAEIHELAGRSFNVGSPKQLGEILFDEMGIEGGKKGKTGAYATG 613 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 A LE + ++ + +L+WRQLSK+KSTY D+L NHIN T RVHT YS+A TGRL Sbjct: 614 ADVLEDLAI-EHELPGRVLDWRQLSKLKSTYTDALQNHINAETGRVHTSYSIAGANTGRL 672 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 AS +PNLQNIPI+++ G++IR AFI+ K L++ DYSQIELRILAH+A I L Q F + Sbjct: 673 ASTDPNLQNIPIRSEEGRRIREAFIAEEGKVLVALDYSQIELRILAHVADIPSLKQAFAD 732 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 +DIH M A+E+F V +++++ +RR AK INF +IYGIS F LA LRIPR EA +I Sbjct: 733 GMDIHAMTASEMFDVPLDQMTSDIRRQAKAINFGVIYGISGFGLARNLRIPRFEAQGFID 792 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 RYF RFPGI Y++ T F +++GYV+T+FGR+I+ EI + K +RAAINAPIQ Sbjct: 793 RYFERFPGIRTYMDDTVAFAKEHGYVQTLFGRKINTPEIGA-KGPQAGFAKRAAINAPIQ 851 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP----EEEITTASQIIVHSME 949 G+AAD+ RRAM+ + ++ D KMLLQ+HDEL+FEV E+ I TA + ME Sbjct: 852 GTAADVIRRAMVRMPDAIADQP--AKMLLQVHDELLFEVENGAQEKLIETARDV----ME 905 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A +P + L V L + NW E Sbjct: 906 NAAMPAVKLDVTLTADAGEGQNWAE 930 >gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1] gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1] Length = 929 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/983 (41%), Positives = 598/983 (60%), Gaps = 71/983 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL LVDGS+FI+RA++A P L+RK DGLP+ A+AGFCNML K+++ + +H A Sbjct: 5 KGHHLHLVDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHKMIEGNTGPDAPTHAA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF + IE++GFEADDIIA Sbjct: 65 VIFDKGSHTFRNDLYDQYKANRDAMPEDLRPQIPLTRDATRAFNLACIEMEGFEADDIIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 TY +A + G TIIS+DKD+MQLV ++D +K +ID E V K+G+ PE++V + Sbjct: 125 TYARMAREAGGRCTIISSDKDMMQLVGDGVEMFDAMKNTRIDREGVEAKFGVGPERVVDV 184 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+L+ +L A IKQ KRR+ ++++A+ RL Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDALLDRAEEIKQPKRRQTLIDHADQIRL 244 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-P 301 SR+LV+L +V + L+ L + + + L++FL +EF L R+A D+A +E P Sbjct: 245 SRQLVLLDENVELEDGLDALDVREPDHDTLLAFLAEMEFRTLTKRIA-----DSAGVEAP 299 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 V+ + ID ++Y Sbjct: 300 VIEEPAPEAAPDAPEMPPIDH------------------------------------AKY 323 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 + ND K +Q WV + G +F T +++ ++ + +++ + Sbjct: 324 EVVND-------VKTLQAWVDRAVVRGEVAFDTETTSLNEMTAELVGVSLCI--EPGAAC 374 Query: 422 F-------KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 + + +F D S+ Q + + L+ E+ +K+ N KYD Sbjct: 375 YIPLLHRGGGDDLFADTSLAEGQ------IPFDDAMEILQPMLEDRSVMKVAQNAKYDVK 428 Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 VL YG+ + +D ML+SY L +G +H + +A+++L +T K ++ S KS I D Sbjct: 429 VLANYGVEVAPIDDTMLLSYALHAGLHNHGMDGLAERYLGHTPLPIKSLIGSGKSQITFD 488 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 ++ + +A E++++ L+ L +PKL + VYERL++P++ V+++ME +GI++D Sbjct: 489 RVPIADAAPYAAEDADITLRFHKLFKPKLHQVGVTKVYERLERPLVPVLARMERSGIKVD 548 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +D+L ++S ++ + LE I++L+GE FN+ SP QLG+ILF K+ G K KTG++ Sbjct: 549 KDVLSRMSNAFAQKMAGLEAEIHELAGESFNVGSPAQLGEILFDKMGLQGGKKGKTGKYS 608 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A LE + ++ + +L+WRQLSK+KSTY D+L +HIN T RVHT YS+A TG Sbjct: 609 TGADILEDLAT-EHDLPGRVLDWRQLSKLKSTYTDALQDHINADTGRVHTSYSIAGANTG 667 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RLAS +PNLQNIPI+++ G++IR AF++ P K L++ DYSQIELRILAHIA I L F Sbjct: 668 RLASTDPNLQNIPIRSEEGRRIREAFVAEPGKVLVALDYSQIELRILAHIAGIDALKDAF 727 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ DIH A+E+F V +E+++P +RR AK INF +IYGIS F LA LRIPR+EA + Sbjct: 728 KDGQDIHAATASEMFNVPLEEMTPDVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGF 787 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I RYF RFPGI Y++ TK F ++N YV+T+FGR+IH EIN+ K RAAINAP Sbjct: 788 IDRYFERFPGIRTYMDDTKKFAKENLYVQTLFGRKIHTPEINA-KGPGAGFAGRAAINAP 846 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI RRAMI + ++E + KMLLQ+HDELVFEV E+ T ME A Sbjct: 847 IQGTAADIIRRAMIRMEDAIE--GIPAKMLLQVHDELVFEVDEDATDTLIARAREVMEGA 904 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 P ++L VP+ V+ W E Sbjct: 905 ADPAVHLSVPITVDAGQGETWAE 927 >gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114] gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114] Length = 925 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/981 (40%), Positives = 610/981 (62%), Gaps = 65/981 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M KE HLFL+DGS +I+RA+YA P L+RK DGLPV A++GFCNML+ L+ ++ + Sbjct: 1 MSKEKHLFLIDGSGYIFRAYYALPPLTRKSDGLPVGAVSGFCNMLYSFLEKAKAGNTMDT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AVIFD FRN+IY DYK NR PE L+PQ +R A +AF +P+IE+ +EA Sbjct: 61 PTHLAVIFDSARKNFRNDIYKDYKGNRSDAPEDLIPQFDYIRKAVKAFNLPSIEMLNYEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY A+K+ +TI+S+DKDLMQLV T + DT+K+ I IE V +K+G+PPE Sbjct: 121 DDLIATYKEKAKKKKIKITIVSSDKDLMQLVDKETFMLDTMKDRHIGIEEVKEKFGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 K++ +Q+L GDS+DNIPG+PGIG KTAA L+ ++G+L+ +L A IKQ KRR+ +L+ Sbjct: 181 KVIDVQSLAGDSVDNIPGVPGIGVKTAAELINQFGSLDELLKKADTIKQPKRRQTLLDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A +SR+LV L+ DVPI +E IL+ + ++ +FL +EF+K+ + TY Sbjct: 241 KNALISRELVTLKCDVPIKEEIEDFILKPLDKEKIFNFLDEMEFSKIKKSIEQTY----- 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 G + +T ++T TPQK +K Sbjct: 296 ---------------GKSSDTLTKKETA--------------------TPQKT---NNKK 317 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 S + I I ++++ +++ + G + T+++++ + + I+++ + Sbjct: 318 ESGFHI-------IYEAQELEDLLKQADNQGYFAIDTETNSLNSQKADLVGISLAINEN- 369 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 E ++ + QD K + KE++ LK + E+E K+G NIKYD + Sbjct: 370 -------EAYYVPVGHKNKQDPNLKKQIKIKELVKVLKPYLEDETVKKVGQNIKYDLKIF 422 Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 +YGI ++ FED ML+SY LD+G + H++ +A+ L + K+++ + KS + D++ Sbjct: 423 LKYGIELKSFEDTMLLSYSLDAGVNRHNLDLLAKTHLDHDNIKFKDVVGTGKSEVTFDEV 482 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 +A E+++V L+L+ L + +++ EK +YE L+ P++DV+++ME GI+IDQ Sbjct: 483 LIDNAYRYACEDADVTLKLYNLFKDRIVKEKCFQIYETLEIPLVDVLARMENNGIKIDQV 542 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 +LK++S S +L +LE+ IY LSGE+FN++S KQLGDIL+ KLK KTK G + T Sbjct: 543 ILKKLSNSFSADLKTLEKKIYKLSGEEFNIASTKQLGDILYEKLKISGTKKTKKGNFATN 602 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 LE + N K +LEWRQ SK+K+TY DSLP +I+K T+R+HT + LA+T TGRL Sbjct: 603 VNVLEDLASKGNEFPKLVLEWRQKSKLKNTYTDSLPEYIDKNTKRIHTSFLLAATSTGRL 662 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 AS +PNLQNIPIK+ G+ IR AF+S +ISADYSQIE+R+LAH+A + L + F+N Sbjct: 663 ASADPNLQNIPIKSKEGKLIRSAFVSEKGSSIISADYSQIEMRVLAHVADVKELKKAFKN 722 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 + DIH + A++IF +I+K++ MRR AK INF IIYGIS + LA Q+ + EA ++ Sbjct: 723 NEDIHNITASQIFECDIKKINEDMRRKAKAINFGIIYGISSYGLAKQISVSNPEAEQFLF 782 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF +FP I +Y+++T F R+NG+V+T+F R+ H+ IN ++++ ERAAINAPIQ Sbjct: 783 SYFKKFPEIRDYMQETLEFCRKNGFVQTMFNRKCHFPNINDKNHTLKSFQERAAINAPIQ 842 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI R AMI++ K + K+ +++L+QIHDEL+ E + ++ Q I + ME A Sbjct: 843 GAAADIIRFAMINIDKKILSKKIKSRLLVQIHDELLLETKDMDLKKEIQKIKNEMENAID 902 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 N VPL V+ + NW + Sbjct: 903 GDYNFSVPLIVDANSAKNWND 923 >gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] Length = 937 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/984 (41%), Positives = 593/984 (60%), Gaps = 74/984 (7%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ + +H AVIF Sbjct: 11 HLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHRYVEGNTGPDAPTHVAVIF 70 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D + TFRN++Y YKANR +PE L PQ+PL R AT+AF I E +GFEADDIIAT Sbjct: 71 DKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEQEGFEADDIIATLA 130 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A G VTIIS+DKDLMQLV + D +K ++ID + V +K+G+ P+++V +QAL Sbjct: 131 CQARDAGGRVTIISSDKDLMQLVGGGVEMLDAMKNKRIDTDGVFEKFGVGPDRVVDVQAL 190 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS+DN+PG PGIG KTAALL+ EYG+LE++L A IKQ KRR+ ++E LS++ Sbjct: 191 AGDSVDNVPGAPGIGIKTAALLINEYGSLEDLLNRAEEIKQPKRRQTLIENRAQIELSKQ 250 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LV L ++ + L+ L + D + L+SFL +EF L RVA +A P ++D Sbjct: 251 LVQLDNNMELDFTLDDLGVRDPDADHLLSFLAEMEFRTLSKRVADQLGKEA----PAIVD 306 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 + T++ ++++D P ++ Sbjct: 307 APAQ---------------STDTAEAATVAD------------------------MPFDS 327 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 SY + + +++WV ++ G + T D + I++ + Sbjct: 328 SSYECVRDAGALKKWVIQIRERGWVAVDTETTGFDEMVVDLVGISLCVEPGR-------- 379 Query: 426 TIFIDLS--VHTSQDSTGKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 +I L+ +S D G + L ++ L LK E+ LKIG N+KYD + Sbjct: 380 ACYIPLTHKSGSSDDLFGSDDLADGQMPLQDALDLLKPVLEDNSILKIGQNMKYDAKIFA 439 Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 R GI + +D MLMSY + +G+ H + ++++++L++T K +L + KS+I D++ Sbjct: 440 RRGIDVAPIDDTMLMSYAMHAGQHGHGMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVP 499 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 +A E++++ L+LW L +P+L + VYE L++P++ V+++ME GI++D+D Sbjct: 500 IDDAVAYAAEDADITLRLWQLFKPQLHQSGVTTVYETLERPLVPVLARMEREGIKVDRDT 559 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L ++S ++ + LE I++L+G+ FN+ SPKQLG+ILF KL G K KTG + T A Sbjct: 560 LSRMSNAFAQKMAGLEAEIHELAGQNFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGA 619 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE + ++ + +L+WRQLSK+KSTY D+L +HIN T RVHT Y TGRLA Sbjct: 620 DILEDLAT-EHALPGLVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYVQTGANTGRLA 678 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIPI+++ G++IR AF+ L++ DYSQIELRILAH+A I L Q F Sbjct: 679 STDPNLQNIPIRSEEGRRIREAFVPEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEG 738 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH + A+E+F V +E+++ +RR AK INF +IYGIS F LA LRIPR+EA +I R Sbjct: 739 QDIHALTASEMFNVPLEEMTSDIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDR 798 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF RFPGI Y+++T F +++G+V+T+FGR+IH EI S K +RAAINAPIQG Sbjct: 799 YFERFPGIRRYMDETVAFAKEHGHVQTLFGRKIHTPEI-SAKGPRAGFAKRAAINAPIQG 857 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP----EEEITTASQIIVHSMEK 950 +AAD+ RRAMI + ++ L +MLLQ+HDEL+FEVP E+ I TASQ+ ME Sbjct: 858 TAADVIRRAMIRMPAAIA--HLPARMLLQVHDELLFEVPEAAVEDTIETASQV----MET 911 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A P ++L V L V+ NW E Sbjct: 912 AADPAVHLDVKLVVDAGRGQNWAE 935 >gi|302381367|ref|YP_003817190.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264] gi|302191995|gb|ADK99566.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264] Length = 994 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/982 (41%), Positives = 586/982 (59%), Gaps = 46/982 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+D S++I+RA++A P L+RK DGLPV A+ G+CNMLWKLL++ + +H A IFD Sbjct: 47 LWLIDASAYIFRAYHALPPLTRKSDGLPVGAVQGYCNMLWKLLKDMKGADGPTHLAAIFD 106 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFRN +Y YKANR PE L+PQ PLVR AT+AFG+ +E+ G+EADD+IATY Sbjct: 107 HSEKTFRNALYDQYKANRSAPPEDLVPQFPLVRDATRAFGVHCVELPGYEADDLIATYAC 166 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 G I+S+DKDLMQL+ P+ ++D +K+ ++ + V++K+G+ P+KM+ LQAL Sbjct: 167 KVRDAGGECVIVSSDKDLMQLIGPSVVMWDPMKDRRLAEDAVMEKFGVTPDKMIDLQALI 226 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DN+PG PGIG KTAA LL EYG+L+ +L A IKQ KRRE ++ + + LSR+L Sbjct: 227 GDSVDNVPGAPGIGPKTAAQLLDEYGDLDTLLERAGEIKQPKRRETLINFRDQILLSRQL 286 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 V L D P P++ + D + L FL+ +EF L+ RV D Sbjct: 287 VRLTCDAPAPEPIDDFRVRDPDPQTLADFLETMEFRSLLRRVG---------------DG 331 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + G + ++ + LS I+ PQ + + ++K S +++D Sbjct: 332 KLAGHDG----------SAFAPARPAPLS--APVISPRYAPQAVSAD-VEKQS---VDHD 375 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF---- 422 +Y I + D+ ++ + G F TD + A H+ ++++ +D + Sbjct: 376 AYHCIRDLADLDAFIARATEAGVVGFDTETDALSATHAGLCGVSLAI--GPNDACYVPLT 433 Query: 423 ----KVETIF-IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 VE +D T +L+ LK E+ LK+ N KYD V+ Sbjct: 434 HEHPPVEGAGGLDFGGDTDARPPLDQLDKPTVLARLKGLLEDPGVLKVVQNGKYDLAVMA 493 Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 R GI + +D ML+SYVL+ G H + +++ L + K + + K+ + Sbjct: 494 RRGIRVAPIDDTMLISYVLEGGLHGHGMDELSRLHLGHEPIPFKSVAGTGKAQKSFKHVE 553 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 +A E+++V L+LW +L+P+L E+L VYE L++ M V++ ME+ GI++D Sbjct: 554 LKPATCYAAEDADVTLRLWRILKPRLATERLATVYETLERGMPAVLADMELRGIRVDPAR 613 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+++S+E + LE ++++G FN+ SP+Q+G+ILF +L P G KT +GQW+T A Sbjct: 614 LRRLSSEFGLRMAELEAQAHEIAGRPFNVGSPRQIGEILFGELNLPGGKKTASGQWETGA 673 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE + + + + +L+WRQLSK+K TY D+L ++ +T RVHT Y LA+ TGRLA Sbjct: 674 ATLEGL-AETHALPRVLLDWRQLSKLKGTYTDALVAAMDPQTDRVHTSYQLAAATTGRLA 732 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIPI+T+ G++IR+AFI+ LISADYSQIELR+LAHI I L + F+ Sbjct: 733 SSDPNLQNIPIRTETGRQIRQAFIAKDGHVLISADYSQIELRLLAHIGDIPELKRAFKAG 792 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 +DIH A+E+FGV + + P+ RR AK INF I+YGIS F LA QL I + EA YIK Sbjct: 793 IDIHTATASEMFGVPVADMDPETRRRAKAINFGIVYGISAFGLANQLGIDQGEAGAYIKT 852 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF RFPGI Y++ T+ VR G+V T+FGR+IH I S + R ERAAINAPIQG Sbjct: 853 YFERFPGIRTYMDATRAEVRSLGFVSTVFGRKIHIPAIASKSGAERQFGERAAINAPIQG 912 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AADI RRAMI + +LE L TKMLLQ+HDELVFE PE E+ A +I ME A P Sbjct: 913 AAADIIRRAMIRMPGALEAAGLETKMLLQVHDELVFEAPEAEVEAAIPLIKRIMEGAAEP 972 Query: 955 KINLRVPLKVNIKVSNNWQEEN 976 + L VPL V+ + + NW E + Sbjct: 973 AVALSVPLVVDARAAKNWDEAH 994 >gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53] gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53] Length = 936 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/986 (41%), Positives = 588/986 (59%), Gaps = 76/986 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLPV A++GF NML + ++N+ A+H A Sbjct: 7 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFVNMLQRYVENNSGADAATHVA 66 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I E++GFEADDIIA Sbjct: 67 VIFDKGSHTFRNDMYDQYKANREAMPEELRPQIPLTRDATRAFNIACEEVEGFEADDIIA 126 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T + A + G VTI+S+DKDLMQLV + D +K ++ID + V +K+G+ P+++V + Sbjct: 127 TLAHQARRAGGRVTIVSSDKDLMQLVGDGVEMLDPMKNKRIDRDGVFEKFGVFPDRVVDV 186 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ E+G+LE++L A I Q KRRE ++ + L Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEFGDLESLLERAGEITQPKRRETLVNHRAQIEL 246 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L D+ + L+ L + + L++FL +EF + R+A A PV Sbjct: 247 SKRLVQLDCDMVLDFGLDDLEIRLPDPDTLLAFLAQMEFRTVSKRIADKLGVAA----PV 302 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + E A ET + P Sbjct: 303 I------EAPAPATET-------------------------------------APIEAVP 319 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + DSY + + +Q W+ ++ G + T ++D + + I++ Sbjct: 320 FDADSYECVRDATALQVWIDRIYEAGHVAVDTETTSLDEMRADLVGISLCVA-------- 371 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKE-------ILSYLKKFFENEHFLKIGHNIKYDKLV 475 + +I L+ D + E L+ LK E+ LKIG N+KYD + Sbjct: 372 AGQACYIPLAHKAGADDLFGSDARAEGQMDMAACLAMLKPVLEDASILKIGQNMKYDAKI 431 Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 GI++ +D MLMSY + +G +H + ++++++L + K +L S KS+I D+ Sbjct: 432 FALLGIAVAPIDDTMLMSYAMHAGLHNHGMDTLSERYLGHIPIPIKPLLGSGKSAITFDR 491 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + ++A E+++V L+LW + +P+L ++ VYE L++P++ V++QME+ GI++D+ Sbjct: 492 VPVDDAVKYAAEDADVTLRLWQMFKPQLHQSRVTTVYETLERPLVPVLAQMEMHGIKVDR 551 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSG---AKTKT 647 D L ++S ++ + LE+ I ++G FN+ SPKQLG+ILF +L P G AK KT Sbjct: 552 DTLSRMSNAFAQKMAGLEDEIQKMAGRPFNVGSPKQLGEILFDELGLAMPDGKLPAKGKT 611 Query: 648 GQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 G + T A LE + D P + IL+WRQL+K+KSTY D+L +HIN T RVHT YS+A Sbjct: 612 GAYSTGADVLEDLATIHDLP--RRILDWRQLAKLKSTYTDALQDHINPDTGRVHTSYSIA 669 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 +TGRLAS +PNLQNIP+++D G++IR AF++ P ++S DYSQIELRILAHIA I Sbjct: 670 GAITGRLASTDPNLQNIPVRSDEGRRIREAFVAAPGNVIVSLDYSQIELRILAHIAGIDA 729 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L Q F + +DIH M A+E+F V +++++P +RR AK INF +IYGIS F LA LRIPRS Sbjct: 730 LKQAFLDGIDIHAMTASEMFDVPLDQMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRS 789 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 +A +I RYF RFPGI +Y++ T F R GYV+T+FGRRI+ EIN+ K +RA Sbjct: 790 DAQGFIDRYFERFPGIRQYMDDTVAFARDRGYVQTLFGRRINTPEINT-KGPQAGFAKRA 848 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAPIQG+AAD+ RRAMI + K++ L KMLLQ+HDEL+FEV I Sbjct: 849 AINAPIQGTAADVIRRAMIRMPKAIA--GLPAKMLLQVHDELLFEVDATAADDLIGIARQ 906 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972 ME A P + L V L V+ NW Sbjct: 907 VMETASDPAVKLDVKLSVDAGQGPNW 932 >gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] Length = 949 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/988 (40%), Positives = 592/988 (59%), Gaps = 64/988 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ + +H A Sbjct: 8 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHRYVEGNTGPDAPTHVA 67 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I E +GFEADDIIA Sbjct: 68 VIFDKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEQEGFEADDIIA 127 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A G VTIIS+DKDLMQLV + D +K ++ID + V +K+G+ P+++V + Sbjct: 128 TLACQARDAGGRVTIISSDKDLMQLVGGGVEMLDAMKNKRIDSDGVFEKFGVGPDRVVDV 187 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+LE +L A IKQ KRR+ ++E E L Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEYGSLEELLDRAEEIKQPKRRQTLIEKREQIEL 247 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S+KLV L +++ + L+ L + D + L+SFL +EF L RVA +A PV Sbjct: 248 SKKLVQLDSNMELGFSLDDLGVRDPDADTLLSFLAEMEFRTLSKRVAEQLGKEA----PV 303 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + D + + +LS ++ P Sbjct: 304 IADAPAAA-------------PSGGAAPADALS----------------------VADLP 328 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + +Y + + + +Q W+ ++ G + T +D + + I+++ + Sbjct: 329 FDASAYECVRDAEALQVWINQIRERGWVAVDTETTGLDEMKADLVGISLAV-----EPGA 383 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + S D G +TL + LS LK E+ LKIG N+KYD + Sbjct: 384 ACYIPLAHKAEAGSDDLFGSDTLAEGQMDFATALSMLKPVLEDPAILKIGQNMKYDAKIF 443 Query: 477 HRY-------GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526 R GI++ ++D ML+SY L +G+ H + ++++++LS++ K +L + KS Sbjct: 444 RRQHGAGFEDGITVAPYDDTMLLSYALFAGQHGHGMDTLSERYLSHSPIPIKSLLGTGKS 503 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 +I D++ + +A E++++ L+LW L +P+L +++ VYE L++P+ V+++ME+ Sbjct: 504 AITFDRVPIADAVAYAAEDADITLRLWKLFKPQLHQQRVTTVYETLERPLSPVLAKMEME 563 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G+++D+D L ++S ++ + +LE I++L+GE FN+ SPKQLG+ILF K+ G K K Sbjct: 564 GVKVDRDTLSRMSNAFAQKMAALESEIHELAGETFNVGSPKQLGEILFDKMGLEGGKKGK 623 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 TG + T A LE + ++ + +L+WRQLSK+KSTY D+L +HI+ T RVHT Y Sbjct: 624 TGAYATGADILEDLAT-EHDLPARVLDWRQLSKLKSTYTDALQDHIHPETGRVHTSYVQT 682 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 TGRLAS +PNLQNIPI+++ G++IR AF++ L++ DYSQIELRILAH+A I Sbjct: 683 GANTGRLASTDPNLQNIPIRSEEGRRIREAFVAEEGNVLLALDYSQIELRILAHVAGIDT 742 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L Q F DIH + A+E+F V + +++P +RR AK INF +IYGIS F LA LRIPR+ Sbjct: 743 LKQAFAEGQDIHALTASEMFNVPLSEMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRA 802 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA +I RYF RFPGI Y++ T F +++GYV+T+FGR+IH EI + K +RA Sbjct: 803 EAQGFIDRYFERFPGIRRYMDDTVAFAKEHGYVQTLFGRKIHTPEI-AAKGPRAGFAKRA 861 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAPIQG+AAD+ RRAMI + +++ L +MLLQ+HDEL+FEVPE + Sbjct: 862 AINAPIQGTAADVIRRAMIRMPEAIA--HLPARMLLQVHDELLFEVPESAAEDTIEAARK 919 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A P ++L V L + NW E Sbjct: 920 VMESAADPAVHLDVKLVADAGQGKNWAE 947 >gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] Length = 937 Score = 751 bits (1939), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/980 (40%), Positives = 590/980 (60%), Gaps = 66/980 (6%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ + +H AVIF Sbjct: 11 HLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLHRYVEGNTGPDAPTHVAVIF 70 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D + TFRN++Y YKANR +PE L PQ+PL R AT+AF I E +GFEADDIIAT Sbjct: 71 DKGSHTFRNDLYDQYKANREAMPEDLRPQIPLTRTATEAFNIACKEQEGFEADDIIATLA 130 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A G VTIIS+DKDLMQLV + D +K ++ID + V +K+G+ P+++V +QAL Sbjct: 131 CQARDAGGRVTIISSDKDLMQLVGGGVEMLDAMKNKRIDTDGVFEKFGVGPDRVVDVQAL 190 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS+DN+PG PGIG KTAALL+ EYG+LE++L A IKQ KRR+ ++E LS++ Sbjct: 191 AGDSVDNVPGAPGIGIKTAALLINEYGSLEDLLNRAEEIKQPKRRQTLIENRAQIELSKQ 250 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LV L ++ + L+ L + D + +L+SFL +EF L RVA +A P ++D Sbjct: 251 LVQLDNNMELDFTLDDLGVRDPDADQLLSFLAEMEFRTLSKRVADQLGKEA----PAIVD 306 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 + T++ ++++D P ++ Sbjct: 307 APAQ---------------STDTAEAATVAD------------------------MPFDS 327 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 SY + + + +++WV ++ G + T D + I++ Sbjct: 328 SSYECVRDAEALKKWVIQIRERGWVAVDTETTGFDEMVVDLVGISLCVEPGS-------- 379 Query: 426 TIFIDLS--VHTSQDSTGKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 +I L+ +S D G + L ++ L+ LK E+ LKIG N+KYD + Sbjct: 380 ACYIPLTHKSGSSDDLFGSDDLADGQMPLQDALNLLKPVLEDNSILKIGQNMKYDAKIFA 439 Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 R GI + +D MLMSY + +G+ H + ++++++L++T K +L + KS+I D++ Sbjct: 440 RRGIDVAPIDDTMLMSYAMHAGQHGHGMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVP 499 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 +A E++++ L+LW L +P+L + VYE L++P++ V+++ME GI++D+D Sbjct: 500 IDDAVAYAAEDADITLRLWQLFKPQLHQSGVTTVYETLERPLVPVLARMEREGIKVDRDT 559 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L ++S ++ + LE I++L+G+ FN+ SPKQLG+ILF KL G K KTG + T A Sbjct: 560 LSRMSNAFAQKMAGLEAEIHELAGQNFNVGSPKQLGEILFDKLGMEGGKKGKTGAYATGA 619 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE + ++ + +L+WRQLSK+KSTY D+L +HIN T RVHT Y TGRLA Sbjct: 620 DILEDLAT-EHALPGLVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYVQTGANTGRLA 678 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIPI+++ G++IR AF+ L++ DYSQIELRILAH+A I L Q F Sbjct: 679 STDPNLQNIPIRSEEGRRIREAFVPEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEG 738 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH + A+E+F V +E+++ +RR AK INF +IYGIS F LA LRIPR+EA +I R Sbjct: 739 QDIHALTASEMFNVPLEEMTSDIRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDR 798 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF RFPGI Y+++T F +++G+V+T+FGR+IH EI S K +RAAINAPIQG Sbjct: 799 YFERFPGIRRYMDETVAFAKEHGHVQTLFGRKIHTPEI-SAKGPRAGFAKRAAINAPIQG 857 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AAD+ RRAMI + ++ L +MLLQ+HDEL+FEVPE + + ME A P Sbjct: 858 TAADVIRRAMIRMPAAIA--HLPARMLLQVHDELLFEVPEAAVEDTIETARQVMETAADP 915 Query: 955 KINLRVPLKVNIKVSNNWQE 974 ++L V L V+ NW E Sbjct: 916 AVHLDVKLVVDAGRGQNWAE 935 >gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 921 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/972 (41%), Positives = 579/972 (59%), Gaps = 68/972 (6%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-SHFAVI 64 HL L+DGS +I+RA++ P L+ K GLP A+ GF MLWKL++N RK+ A +HFAVI Sbjct: 9 HLILIDGSGYIFRAYHRLPPLTNKA-GLPAGAVYGFTTMLWKLVENIRKQDDAPTHFAVI 67 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD +FR ++YP YKA+RP PE L+PQ PL+R AT+AF +P+IE +G EADDIIA Y Sbjct: 68 FDSSRKSFRQDLYPAYKAHRPPPPEDLVPQFPLIREATRAFSVPSIEQEGLEADDIIACY 127 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 + +A + GF VT+ S+DKDLMQL+ P L+D V I E V+KK+G+ PEK+ L A Sbjct: 128 SRVALERGFQVTVYSSDKDLMQLIQPRLNLFDPVNNCLIGSEQVVKKFGVVPEKLGDLLA 187 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS DNIPG+PG+G KTA+ L+ EYGNL IL +A IKQ K R+N++EY ETA LSR Sbjct: 188 LMGDSADNIPGVPGVGPKTASRLINEYGNLSEILESAPEIKQPKLRQNLIEYKETAILSR 247 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 +LV L D P+ PL++L+++ + L FL F+ L+ R Sbjct: 248 ELVALVDDKPLPEPLDNLVVKGVDMTPLRDFLSEQGFSSLLARAGG-------------- 293 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 Q + ++D + ++ + S + Sbjct: 294 ------------------------GQSAPVADGSKEMAAS--------------SSQSFD 315 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 D+Y +++ K + +W+ + G + TD +DA ++ + +++ST + K Sbjct: 316 PDAYETVIDEKALDRWIADIYQKGQVAVDTETDNLDATQARLVGVSLST------EAGKA 369 Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 I H D ++ LK E+ LKIG NIKYD +VL RYGIS++ Sbjct: 370 CYIPCGHGGHDLLDQKPDQMDLSLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRYGISVQ 429 Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541 F+D ML+SY LD+GR H + ++ + + + K + + KS+I + + + Sbjct: 430 PFDDTMLLSYDLDAGRHGHGMDELSLLYFDHQPISFKSVCGTGKSAITFNHVPIPAATRY 489 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 A E++++ +LW LL+P+L + +YE +D+P+ V+++ME GI +D L +S+ Sbjct: 490 AAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSR 549 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + ++ LEE IY L+G +F +SSPKQLG++LF + G K+K+GQ+ T +LE++ Sbjct: 550 FAHDISRLEEEIYVLAGCRFLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLA 609 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 I ILEWRQLSK+KSTY+D+L +N T RVHT +SL TGRL+S +PNLQ Sbjct: 610 AEGEVIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGAQTGRLSSTDPNLQ 669 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+T++G++IR AFI+ L+SADYSQIELR+ AH+A L Q F+ DIH + Sbjct: 670 NIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFQEKEDIHALT 729 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A ++FG V + R AKTINF+I+YGIS + LA +L I R A + I RYF RFP Sbjct: 730 AKQLFG----HVDRESRARAKTINFAILYGISAWGLAARLEIDRFSAQEMIDRYFERFPA 785 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I YI++T +FVR +GYVET FGR+ H I S K + R ER AINAPIQG +ADI + Sbjct: 786 IRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINAPIQGMSADIIK 845 Query: 902 RAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 RAM+ + +L L++ KMLLQ+HDEL+FEVPEE+I A +I M +A LP + L V Sbjct: 846 RAMVRMEPALAKAGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSV 905 Query: 961 PLKVNIKVSNNW 972 L+V I +W Sbjct: 906 DLEVEIGTGTSW 917 >gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] Length = 976 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/1004 (40%), Positives = 590/1004 (58%), Gaps = 76/1004 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 ++ L L+DGS +I+RAF+A P+++R DG PVNA+ GF +ML KL+ + + H A Sbjct: 15 QKARLLLIDGSGYIFRAFHALPMMTRA-DGTPVNAVYGFTSMLMKLVDDM----MPDHVA 69 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V+FD TFR++IYPDYKANR PE L+PQ LVR AT A +P +E GFEADD+IA Sbjct: 70 VVFDTSRQTFRSDIYPDYKANRLAPPEDLIPQFALVREATTALSLPMMEASGFEADDLIA 129 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 TY +AE I+S+DKDLMQLV + D +K+ +I V +K+G+ P+K+V + Sbjct: 130 TYAALAETANMETIIVSSDKDLMQLVRGNVTMLDPMKQRRIGAAEVEEKFGVTPDKVVDV 189 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS DN+PG+PGIG KTAA L+ YG+LE++L A IKQ KRREN++ +AE AR+ Sbjct: 190 QALAGDSSDNVPGVPGIGVKTAAELINIYGDLESLLACADEIKQPKRRENLIAFAEQARI 249 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL----EFTKLINRVATTYDCDAAN 298 SR+LV+LR D P PLE ++ PR + LKA +F +L+ R+ + D Sbjct: 250 SRQLVLLREDAPT--PLEMGAMK--TPPRNMDVLKAFLVEQDFKRLLVRIGASADAADKV 305 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 P V + T + T ++D T K S +++ D S N E Sbjct: 306 SNPAVRSMGGT------LSTNANQDQTAKDSAMATIHDAQSLRNIEA------------- 346 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 YT I + + + ++ K G + T ++A + I+++ Sbjct: 347 --------DYTLITDREALVSFLGKARKQGFLAVDTETTGLNASAVDLVGISMAIAPG-- 396 Query: 419 DTSFKVETIFIDLSVHTSQDST-GKNTLTKEILSY--------------------LKKFF 457 + +I L + DS G + L++ +K F Sbjct: 397 ------QACYIPLRHGATNDSAVGSGVAVQGGLNFSDDDTPAHYPQLDFETAMAEIKPLF 450 Query: 458 ENEHFLKIGHNIKYDKLVLHR---YGISMRGFEDIMLMSYVLDSGR-SSHDIASIAQKWL 513 E+ LKIGHN+KYD VL R GI++ +D M +SYVLD GR H + +A WL Sbjct: 451 EDPAVLKIGHNLKYDAHVLMRPRNGGINLAPVDDTMCLSYVLDGGRVERHSMDYLAGHWL 510 Query: 514 SYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570 YT ++ IP +++ ++A E++++ L+LW++L+P+L EK+ VYE Sbjct: 511 DYTTIKFSDVCGKGAKQIPFSELAPEAALDYAAEDADITLRLWMILKPRLAGEKVASVYE 570 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 RL++P+I V++QME GI +D+ +L ++S + + + +L ++I L+GE FN++SPKQLG Sbjct: 571 RLERPLIPVLAQMENYGITVDRSILARMSNDFATRMEALAQDILALAGEDFNIASPKQLG 630 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 +ILF K+ G K KTG + T+A LE + I +L+WR L+K+KSTYAD+L Sbjct: 631 EILFDKMGLQGGKKAKTGAYSTSADVLEDLAASGVEIASKVLDWRHLAKLKSTYADALVE 690 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750 I T RVHT +S+ TGRL+S +PN+QNIPI+T G++IR AFI+ KLIS DY Sbjct: 691 CILPATGRVHTSFSMVGASTGRLSSSDPNVQNIPIRTSEGRQIRTAFIAAEGCKLISVDY 750 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELR++AH+A + + F++ +DIH A+E+FG+ ++++ + RR AK INF IIY Sbjct: 751 SQIELRLVAHVAGEQSMIEAFKDGIDIHARTASEVFGIPLDQMDSETRRRAKAINFGIIY 810 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 GIS F LA QL IP+ EA DYI YF FPGI Y+E+ K R++G+VET+FGRRIH Sbjct: 811 GISAFGLARQLSIPQGEARDYIASYFENFPGIRAYMERIKTEAREDGFVETLFGRRIHIT 870 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 + ++ R ER AINAPIQGSAADI +RAMI + +L+ + MLLQ+HDEL+F Sbjct: 871 GMAGGSAAHRGFAERQAINAPIQGSAADIIKRAMIRIPPALQAADIRADMLLQVHDELIF 930 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E P + A + I ME A P ++L+VPL ++++W + Sbjct: 931 EAPAADADNAVKHITRIMEAAAAPVVDLKVPLVAEAGIADSWAD 974 >gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] Length = 924 Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/980 (41%), Positives = 608/980 (62%), Gaps = 71/980 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSR-KESIA- 58 ++K +H +L+DGS +I+RA+YA P L+RK DGLPV A++GFC+ML+KLL++S+ E++ Sbjct: 4 IKKTDHFYLIDGSGYIFRAYYALPPLTRKSDGLPVGAVSGFCSMLFKLLEDSKSNENLQK 63 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFD TFRNEIY DYKANR + P+ L PQ +R + AF +P++++ +EA Sbjct: 64 PTHFAVIFDAARKTFRNEIYSDYKANRSEAPDDLAPQFEYIRKSVVAFNLPSVDLPNYEA 123 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +G VTI+S+DKDLMQL ++D +K + I E ++ K+G+ PE Sbjct: 124 DDLIATYVEQILAKGAKVTIVSSDKDLMQLYRKDVRIFDPMKNKFITPEDIVTKFGVGPE 183 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 K++ +Q+L GDS DN+PG+PGIG KTAA L+ +YG LE +L NA IKQ KRRE ++E Sbjct: 184 KVIDVQSLAGDSSDNVPGVPGIGVKTAAELINKYGTLEKLLDNAQEIKQNKRRETLIENK 243 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A +S+KLV L D P+ LE L+ + +L FL+ +EF +L++ V + Y Sbjct: 244 DKAIISKKLVTLMKDAPVERKLEEFHLKKIDKNKLYKFLREMEFNRLLSSVISAYG---- 299 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 EP++ ++T+K E P+K Sbjct: 300 --EPLL--------------------------------EETAK---ETKPEK-------- 314 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I N K+I +W+ + E G + T ++DA + + I++ST K Sbjct: 315 -KHQNISKKNYHLITNEKEIDEWINEAEEAGELAIDTETSSLDAHQTDLVGISLSTKIGK 373 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 +I + H + K T+ K+ LK E++ KIG NIK+D +VL+ Sbjct: 374 --------ACYIPIG-HKFKGCLKKETVIKK----LKPLLEDKSVKKIGQNIKFDFIVLY 420 Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534 ++GI+M ED MLMSYVLD+G++ H++ ++++ L + + KEI+ + K I + Sbjct: 421 KHGINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHLQHKTISFKEIVGTGKKEINFSDVE 480 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + E+A E++++ +L+ + L +EKL ++YE +KP+I +++ MEI GI+ID Sbjct: 481 LDKAMEYAAEDADITYRLYKIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKF 540 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 LK +S + K + LE+ ++ +S +KFN++SPKQLG+I++ LK KT+ G + T A Sbjct: 541 LKVLSEKFEKKISKLEKEVFKISKKKFNIASPKQLGEIIYNDLKIAVLKKTRKGSFATNA 600 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE + + K IL+WRQ+SK+K+TY+D+LP HIN T+RVHT + LA+T TGRLA Sbjct: 601 SVLEDLAFKGHEFPKLILDWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLA 660 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIPIK++ G+ IR+AFI+ LISADY+QIE+RILA +A++ L + F N+ Sbjct: 661 SSDPNLQNIPIKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSNN 720 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH + A+++F V+I+KV MRR AK INF IIYGIS + LA Q+ + EA +++ Sbjct: 721 EDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHEADEFLNA 780 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF +FP I Y++ T F R++GYV IFGRR H++ IN ++RN ERAAINAPIQG Sbjct: 781 YFLKFPEIKIYMDNTIKFCRKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQG 840 Query: 895 SAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 SA++I R AMI ++K E K +K+LLQIHDEL+FEVP +E+ ++II M Sbjct: 841 SASEIMRLAMIRLNKKFESIKNNKSKILLQIHDELIFEVPVKEVKNITEIIKDEMTSVTE 900 Query: 954 PKIN-LRVPLKVNIKVSNNW 972 ++ PL V++ +NW Sbjct: 901 SDLHTFSTPLTVDVNTGDNW 920 >gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] Length = 924 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/981 (40%), Positives = 605/981 (61%), Gaps = 73/981 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSR-KESIA- 58 ++K +H +L+DGS +I+RA+YA P L+RK DGLPV A++GFC+ML+KLL++S+ E++ Sbjct: 4 IKKTDHFYLIDGSGYIFRAYYALPPLTRKSDGLPVGAVSGFCSMLFKLLEDSKSNENLQK 63 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFD TFRNEIY DYKANR + P+ L PQ +R + AF +P++++ +EA Sbjct: 64 PTHFAVIFDAARKTFRNEIYSDYKANRSEAPDDLAPQFEYIRKSVVAFNLPSVDLPNYEA 123 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +G VTI+S+DKDLMQL ++D +K + I E ++ K+G+ PE Sbjct: 124 DDLIATYVEQILAKGAKVTIVSSDKDLMQLYRKDVRIFDPMKNKFITPEDIVTKFGVGPE 183 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 K++ +Q+L GDS DN+PG+PGIG KTAA L+ +YG LE +L NA IKQ KRRE ++E Sbjct: 184 KVIDVQSLAGDSSDNVPGVPGIGVKTAAELINKYGTLEKLLDNAQEIKQNKRRETLIENK 243 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A +S+KLV L D P+ LE L+ + +L FL+ +EF +L++ V + Y Sbjct: 244 DKAIISKKLVTLMKDAPVERKLEEFHLKKIDKNKLYKFLREMEFNRLLSSVISAYG---- 299 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 EP++ ++T+K E P+K Sbjct: 300 --EPLL--------------------------------EETAK---ETKPEK-------- 314 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ +Y I N K+I +W+ + E G + T ++DA + + I++ST Sbjct: 315 -KHQNISKKNYHLITNEKEIDEWINEAEEAGELAIDTETSSLDAHQTDLVGISLSTK--- 370 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476 I + + K L KE ++ LK E++ KIG NIK+D +VL Sbjct: 371 -----------IGQACYIPIGHKFKGCLKKETVIKKLKPLLEDKSVKKIGQNIKFDFIVL 419 Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 ++ GI+M ED MLMSYVLD+G++ H++ ++++ L + + KEI+ + K I + Sbjct: 420 YKQGINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHLQHKTISFKEIVGTGKKEINFSDV 479 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 + E+A E++++ +L+ + L +EKL ++YE +KP+I +++ MEI GI+ID Sbjct: 480 ELDKAMEYAAEDADITYRLYKIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNK 539 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 LK +S + K + LE+ ++ +S ++FN++SPKQLG+I++ LK KT+ G + T Sbjct: 540 FLKVLSEKFEKKISKLEKEVFKISKKEFNIASPKQLGEIIYNDLKIAVLKKTRKGSFATN 599 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 A LE + + K IL+WRQ+SK+K+TY+D+LP HIN T+RVHT + LA+T TGRL Sbjct: 600 ASVLEDLAFKGHEFPKLILDWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRL 659 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 AS +PNLQNIPIK++ G+ IR+AFI+ LISADY+QIE+RILA +A++ L + F N Sbjct: 660 ASSDPNLQNIPIKSEDGKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSN 719 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 + DIH + A+++F V+I+KV MRR AK INF IIYGIS + LA Q+ + EA +++ Sbjct: 720 NEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHEADEFLN 779 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF +FP I Y++ T F R++GYV IFGRR H++ IN ++RN ERAAINAPIQ Sbjct: 780 AYFLKFPEIKIYMDNTIKFCRKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQ 839 Query: 894 GSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 GSA++I R AMI ++K E K +K+LLQIHDEL+FEVP +E+ ++II M Sbjct: 840 GSASEIMRLAMIRLNKKFESIKNNKSKILLQIHDELIFEVPVKEVKNITEIIKDEMTSVT 899 Query: 953 LPKIN-LRVPLKVNIKVSNNW 972 ++ PL V++ +NW Sbjct: 900 ESDLHTFSTPLTVDVNTGDNW 920 >gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 921 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/972 (41%), Positives = 579/972 (59%), Gaps = 68/972 (6%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-SHFAVI 64 HL L+DGS +I+RA++ P L+ K GLP A+ GF MLWKL++N RK+ A +HFAVI Sbjct: 9 HLILIDGSGYIFRAYHRLPPLTNKA-GLPAGAVYGFTTMLWKLVENIRKQDDAPTHFAVI 67 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD +FR ++YP YKA+RP PE L+PQ PL+R AT+AF +P+IE +G EADDIIA Y Sbjct: 68 FDSSRKSFRQDLYPAYKAHRPPPPEDLVPQFPLIREATRAFSVPSIEQEGLEADDIIACY 127 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 + +A + GF VT+ S+DKDLMQL+ P L+D V I E V+KK+G+ PEK+ L A Sbjct: 128 SRVALERGFQVTVYSSDKDLMQLIQPRLNLFDPVNNCLIGSEQVVKKFGVVPEKLGDLLA 187 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD+ DNIPG+PG+G KTA+ L+ EYGNL IL +A IKQ K R+N++EY ETA LSR Sbjct: 188 LMGDTADNIPGVPGVGPKTASRLINEYGNLSEILESAPEIKQPKLRQNLIEYKETAILSR 247 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 +LV L D P+ PL++L+++ + L FL F+ L+ R Sbjct: 248 ELVALVDDKPLPEPLDNLVVKGVDMTPLRDFLSEQGFSSLLARAGG-------------- 293 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 Q + ++D + ++ + S + Sbjct: 294 ------------------------GQSAPVADGSKEMAAS--------------SSQSFD 315 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 D+Y +++ K + +W+ + G + TD +DA ++ + +++ST + K Sbjct: 316 PDAYETVIDEKALDRWIADIYQKGQVAVDTETDNLDATQAQLVGVSLST------EAGKA 369 Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 I H D ++ LK E+ LKIG NIKYD +VL RYGIS++ Sbjct: 370 CYIPCGHGGHDLLDQKPDQMDLLLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRYGISVQ 429 Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541 F+D ML+SY LD+GR H + ++ + + + K + + KS+I + + + Sbjct: 430 PFDDTMLLSYDLDAGRHGHGMDELSLLYFDHQPISFKSVCGTGKSAITFNHVPIPAATRY 489 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 A E++++ +LW LL+P+L + +YE +D+P+ V+++ME GI +D L +S+ Sbjct: 490 AAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSR 549 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + ++ LEE IY L+G +F +SSPKQLG++LF + G K+K+GQ+ T +LE++ Sbjct: 550 FAHDISRLEEEIYALAGCRFLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLA 609 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 I ILEWRQLSK+KSTY+D+L IN T RVHT +SL TGRL+S +PNLQ Sbjct: 610 AEGEVIASKILEWRQLSKLKSTYSDALIGKINPETGRVHTSFSLVGAQTGRLSSTDPNLQ 669 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+T++G++IR AFI+ L+SADYSQIELR+ AH+A L Q F+ DIH + Sbjct: 670 NIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFQEKEDIHALT 729 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A ++FG V + R AKTINF+I+YGIS + LA +L I R A + I RYF RFP Sbjct: 730 AKQLFG----HVDRESRARAKTINFAILYGISAWGLAARLEIDRFSAQEMIDRYFERFPA 785 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I YI++T +FVR +GYVET FGR+ H I S K + R ER AINAPIQG +ADI + Sbjct: 786 IRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINAPIQGMSADIIK 845 Query: 902 RAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 RAM+ + +L L++ KMLLQ+HDEL+FEVPEE+I A +I M +A LP + L V Sbjct: 846 RAMVRMEPALAKVGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSV 905 Query: 961 PLKVNIKVSNNW 972 L+V I +W Sbjct: 906 DLEVEIGTGTSW 917 >gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] Length = 921 Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/972 (41%), Positives = 578/972 (59%), Gaps = 68/972 (6%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-SHFAVI 64 HL L+DGS +I+RA++ P L+ K GLP A+ GF MLWKL++N RK+ A +HFAVI Sbjct: 9 HLILIDGSGYIFRAYHRLPPLTNKA-GLPAGAVYGFTTMLWKLVENIRKQDDAPTHFAVI 67 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD +FR ++YP YKA+RP PE L+PQ PL+R AT+AF +P+IE +G EADDIIA Y Sbjct: 68 FDSSRKSFRQDLYPAYKAHRPPPPEDLVPQFPLIREATRAFSVPSIEQEGLEADDIIACY 127 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 + +A + GF VT+ S+DKDLMQL+ P L+D V I E V+KK+G+ PEK+ L A Sbjct: 128 SRVALERGFQVTVYSSDKDLMQLIQPRLNLFDPVNNCLIGSEQVVKKFGVVPEKLGDLLA 187 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD+ DNIPG+PG+G KTA+ L+ EYGNL IL +A IKQ K R+N++EY ETA LSR Sbjct: 188 LMGDTADNIPGVPGVGPKTASRLINEYGNLSEILESAPEIKQPKLRQNLIEYKETAILSR 247 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 +LV L D P+ PL++L+++ + L FL F+ L+ R Sbjct: 248 ELVALVDDKPLPEPLDNLVVKGVDMTPLRDFLSEQGFSSLLARAGG-------------- 293 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 Q + ++D + ++ + S + Sbjct: 294 ------------------------GQSAPVADGSKEMAAS--------------SSQSFD 315 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 D+Y +++ K + +W+ + G + TD +DA ++ + +++ST + K Sbjct: 316 PDAYETVIDEKALDRWIADIYQKGQVAVDTETDNLDATQAQLVGVSLST------EAGKA 369 Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 I H D ++ LK E+ LKIG NIKYD +VL RYGIS++ Sbjct: 370 CYIPCGHGGHDLLDQKPDQMDLLLLVKKLKPVLEDPSILKIGQNIKYDMIVLSRYGISVQ 429 Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541 F+D ML+SY LD+GR H + ++ + + + K + + KS+I + + + Sbjct: 430 PFDDTMLLSYDLDAGRHGHGMDELSLLYFDHQPISFKSVCGTGKSAITFNHVPIPAATRY 489 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 A E++++ +LW LL+P+L + +YE +D+P+ V+++ME GI +D L +S+ Sbjct: 490 AAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSSR 549 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + ++ LEE IY L+G +F +SSPKQLG++LF + G K+K+GQ+ T +LE++ Sbjct: 550 FAHDISRLEEEIYVLAGCRFLISSPKQLGEVLFGTMGLAGGKKSKSGQYSTNVTELERLA 609 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 I ILEWRQLSK+KSTY+D+L +N T RVHT +SL TGRL+S +PNLQ Sbjct: 610 AEGEAIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGAQTGRLSSTDPNLQ 669 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+T++G++IR AFI+ L+SADYSQIELR+ AH+A L Q F DIH + Sbjct: 670 NIPIRTEIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFREKEDIHALT 729 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A ++FG V + R AKTINF+I+YGIS + LA +L I R A + I RYF RFP Sbjct: 730 AKQLFG----HVDRESRARAKTINFAILYGISAWGLAARLEIDRFSAQEMIDRYFERFPA 785 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I YI++T +FVR +GYVET FGR+ H I S K + R ER AINAPIQG +ADI + Sbjct: 786 IRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINAPIQGMSADIIK 845 Query: 902 RAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 RAM+ + +L L++ KMLLQ+HDEL+FEVPEE+I A +I M +A LP + L V Sbjct: 846 RAMVRMEPALAKAGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVMMEAALPIVQLSV 905 Query: 961 PLKVNIKVSNNW 972 L+V I +W Sbjct: 906 DLEVEIGTGTSW 917 >gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] Length = 928 Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/981 (40%), Positives = 581/981 (59%), Gaps = 69/981 (7%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + H+ L+DGS FI+RAF+ P ++R DG PVNA+ GF ML KLL +S + H Sbjct: 3 EAPRHVTLIDGSGFIFRAFHGLPPMTRA-DGTPVNAVYGFTTMLMKLLADSSSD----HV 57 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 AVIFD TFR+ IYP+YKA+RP PE L+PQ PLVR AT+AF +PAIE++GFEADD+I Sbjct: 58 AVIFDSSRKTFRSAIYPEYKAHRPPAPEELVPQFPLVREATRAFDLPAIELEGFEADDLI 117 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 ATY +A + G VTI+S+DKDLMQLV P + D +K I V +K+G+ P+K+V Sbjct: 118 ATYARLAVEAGARVTIVSSDKDLMQLVGPGVEMIDPMKNRTIGEAEVREKFGVSPDKVVD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +QAL GDS DN+PG+PGIG KTAA L++EYG+L+ +L AS IKQ KRRE+++ A+ AR Sbjct: 178 VQALCGDSSDNVPGVPGIGVKTAAQLIEEYGDLDTLLARASEIKQPKRRESLIANADLAR 237 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 +SR+LV LRTD P+ +PL L ++ +L +F A F L+ R+ Sbjct: 238 ISRELVRLRTDAPVPVPLSELDVKPPAPEKLAAFCAAQGFRSLMGRL------------- 284 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 + I T+ ++ T + + P + S Sbjct: 285 ---------------------NAKIPTAAPTA----TRAVLPTEAPA-------EAPSLP 312 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 P +Y + + ++ W+ G F T +D ++ + ++++ + + Sbjct: 313 PKVETAYELVTDLAALENWIALATGGGLVGFDTETTGLDPLRARLVGVSLAVAPGR---A 369 Query: 422 FKVETIFI------DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + DL S D+ + E L+ LK + LK+GHNIKYD V Sbjct: 370 CYIPVLHAPAQAQGDLLGGPSTDAP-QIIPAAETLARLKPLLADPSVLKVGHNIKYDMQV 428 Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 + G+++ F+D ML+SY LD H + + L + E+ S ++ + D+ Sbjct: 429 MAMQGLAVEPFDDTMLLSYALDGASHGHGLDELCLLHLGHANIPFSEVCGSGRNQVTFDR 488 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +++A E++++ L+L LL+P+L+ E+++ VYE L++P++ V++ ME GI++D+ Sbjct: 489 VPLDKARDYAAEDADMTLRLHALLKPRLLSERMVSVYETLERPLVPVIAAMERDGIKVDR 548 Query: 593 DLLKQVSAEISKNLLSLEENIYDLS-GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L +S + + L LE + L+ GE FNL SP+QLG +LF L P G KTKTGQW Sbjct: 549 AQLMALSEDFGRRLTELETEVIALNNGEAFNLGSPQQLGKVLFETLNLPGGKKTKTGQWA 608 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A LE++ + + +L+WRQLSK+K TY D+L IN T RVHT YSLA+T TG Sbjct: 609 TGADVLEEL-APLHALPARLLDWRQLSKLKGTYTDALVAQINPATGRVHTSYSLAATTTG 667 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+T+ G+KIR AF++ P KKL+SADYSQIELR++AH+A+I L F Sbjct: 668 RLSSSDPNLQNIPIRTEEGRKIRHAFVAEPGKKLVSADYSQIELRLVAHVAEIAGLRDAF 727 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DIH + A+++FGV ++ + P +RR AK INF IIYGIS F LA QL IP+ EA Y Sbjct: 728 AHGADIHAITASQVFGVPLDGIDPALRRRAKAINFGIIYGISAFGLAAQLGIPQGEAKAY 787 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I+ YF R+P I Y+E+TK R G+V T+FGR++ I ++R ERAAIN P Sbjct: 788 IEAYFARYPEIRAYMERTKEEARDQGFVTTLFGRKVFTPGIKDKNGAMRAFAERAAINGP 847 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG AADI +RAMI + +L L+ ++LLQ+HDELV E PE E ++ ME A Sbjct: 848 IQGGAADIIKRAMIRLPAALAAAGLSARLLLQVHDELVLEAPEAEADATVAVVKQVMEAA 907 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 +L VPL V +++ W Sbjct: 908 A----SLSVPLLVEAGIADTW 924 >gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] Length = 924 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/982 (40%), Positives = 605/982 (61%), Gaps = 75/982 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES---I 57 +QK +H +L+DGS +I+RA+YA P L+RK DGLP A++GFC+ML+KLL++S+ + Sbjct: 4 IQKTDHFYLIDGSGYIFRAYYALPPLTRKSDGLPTGAVSGFCSMLFKLLEDSKSDQNLQK 63 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFD TFRNEIY DYKANR + P+ L PQ +R + AF +P++++ +EA Sbjct: 64 PTHFAVIFDSARKTFRNEIYSDYKANRSEAPDDLAPQFEYIRKSVLAFNLPSVDLPNYEA 123 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY K+G VTI+S+DKDLMQL ++D +K + I E +I K+G+ Sbjct: 124 DDLIATYAEKILKKGAKVTIVSSDKDLMQLYKKDVRIFDPMKNKFISEEDIINKFGVDAS 183 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 K++ +Q+L GDS DN+PG+PGIG KTAA L+ +YG LE +L +A+ IKQ KRRE ++E Sbjct: 184 KVIDVQSLAGDSSDNVPGVPGIGVKTAAELINKYGTLEKLLKSANEIKQNKRRETLIENK 243 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A +S++LV L+ D P+ L L+ + +L FL+ +EF +L++ + Y Sbjct: 244 DKAIISKQLVTLKQDSPVNRDLSEFKLKKIDKDKLYKFLREMEFNRLLSSAISAYG---- 299 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 EP K++SE KL +E+ Sbjct: 300 --EP--------------------------------------KLSSETVEDKL-IEK--- 315 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Q PI+N +Y I + K I +W+++ E G + T+++D + + I++S+ K Sbjct: 316 --QKPISNKNYFLITDIKQIDEWIKEAEETGELAVDTETNSLDPHQADLVGISLSSKVGK 373 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 +I + H S KN + K+ LK E+ KIG NIK+D +VL Sbjct: 374 --------ACYIPIG-HKSSKCINKNDVIKK----LKPLLEDPSVKKIGQNIKFDFIVLF 420 Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534 + GI M ED MLMSYVLD+G++ H++ ++++ L + + KEI+ + K I + Sbjct: 421 KQGIEMTSMEDTMLMSYVLDAGKNRHNMDTLSEIHLGHKTISFKEIVGTGKKEINFSDVE 480 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + +++A E++++ +L+ L +EK++++YE +KP+I +++ ME+ G+++D Sbjct: 481 IERAKDYAAEDADITFRLYKKFSKNLKLEKMINIYEIFEKPLIKILAFMEMEGVEVDNKF 540 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 LK +S++ K + +LE+ I+ +S + FN++SPKQLG+I++ LK KTK G + T+A Sbjct: 541 LKTLSSKFEKKIKNLEKEIFKISKKDFNIASPKQLGEIIYNDLKIAELKKTKKGSFATSA 600 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE + + K +L+WRQ+SK+K+TY+DSLP HIN T+RVHT + LA+T TGRLA Sbjct: 601 SVLEDLAFKGHKFPKLVLDWRQVSKLKNTYSDSLPEHINPNTKRVHTSFLLAATTTGRLA 660 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIPIK++ G+ IR+AF S LISADY+QIE+RILA +A + L + F+N Sbjct: 661 SSDPNLQNIPIKSEDGRDIRKAFTSRKNHLLISADYNQIEMRILADLADVKELKKAFKND 720 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH + A++IF V+I+KV RR AK INF IIYGIS + LA Q+ + EA +++ Sbjct: 721 EDIHSLTASQIFNVDIKKVDQDQRRKAKAINFGIIYGISQYGLAKQINVSNYEAEEFLDA 780 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF +FP I Y+ T F R++GYV IFGRR H++ IN ++RN ERAAINAPIQG Sbjct: 781 YFAKFPEIKIYMNDTIKFCRKSGYVNNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQG 840 Query: 895 SAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 SA++I R AMI ++K L D K + +KMLLQIHDEL+FEVP+ T ++I M A + Sbjct: 841 SASEIMRLAMIRLNKKLSDKKNIQSKMLLQIHDELIFEVPKNNEKTMIKLIKDEM--ASV 898 Query: 954 PKIN---LRVPLKVNIKVSNNW 972 K + +PL V+I V +NW Sbjct: 899 VKSDHHSFSIPLTVDINVGDNW 920 >gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45] gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45] Length = 935 Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/986 (40%), Positives = 594/986 (60%), Gaps = 72/986 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML K +++S +H A Sbjct: 6 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLQKYVEDSSGPDAPTHVA 65 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT AF I E++G+EADDIIA Sbjct: 66 VIFDKGSHTFRNDLYDLYKANREAMPEDLRPQIPLTRTATLAFNIACKELEGYEADDIIA 125 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T T A + G VTIIS+DKDLMQLV + D +K ++ID + V +K+G+ PE++V + Sbjct: 126 TLTCQAREAGGRVTIISSDKDLMQLVGDGVEMLDAMKNKRIDRDGVFEKFGVFPERVVDV 185 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ ++G+LE +L A IKQ KRR+ ++E E L Sbjct: 186 QALAGDSVDNVPGAPGIGIKTAALLINDFGSLEELLDRADEIKQPKRRQTLIEKREQIEL 245 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L DC P L+F+ D + + +P Sbjct: 246 SKRLVQL----------------DCETP--------LDFS--------LDDLEVRDPDPG 273 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 VL + TE++ T T + + + + + E P E Sbjct: 274 VL---------LGFLTEMEFRTL--TKRVADKFGKDAPVLPEAAPAAAGAEAGAAPEMPA 322 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ Y + +++ W+ + + G + T ++ + I++ T Sbjct: 323 IDPAGYAWVKTAEELAPWIAETQQRGWVAVDTETTGLNEMACDLVGISLCI------TPG 376 Query: 423 KVETIFIDLSVHTSQDSTGKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 K I + + D G + L ++ L LK E+ +KIG N+KYD + Sbjct: 377 KACYIPLAHRAAATDDLFGSDELAEGQMPMQDALDLLKPLLEDPAVMKIGQNMKYDAKIF 436 Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYGI + +D MLMSY + G H + ++++++LS+T K +L S KS I D++ Sbjct: 437 ARYGIGITPIDDTMLMSYAMHGGLHGHGMDTLSERYLSHTPIPIKSLLGSGKSQITFDRV 496 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 ++A E++++ L+LW + +P+L +++ VYE L++P++ V+++ME+ G+Q+D+D Sbjct: 497 PVEDAVKYAAEDADITLRLWTIFKPQLHQDRVTRVYEGLERPLVPVLAEMEMAGVQVDRD 556 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L ++S S+ + LE I++L+GE FN+ SPKQLG+ILF K+ G K KTG + T Sbjct: 557 TLSRMSNAFSQKMAQLEAEIHELAGESFNVGSPKQLGEILFDKMGLEGGKKGKTGAYATG 616 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 A LE + ++ + +L+WRQLSK+KSTY D+L HINK T RVHT Y +A TGRL Sbjct: 617 ADVLEDLAT-EHELPARVLDWRQLSKLKSTYTDALQEHINKETGRVHTSYVIAGANTGRL 675 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 AS +PNLQNIP++++ G++IR AF++P K ++S DYSQIELRILAH+A I L + F Sbjct: 676 ASTDPNLQNIPVRSEEGRRIREAFVAPEGKTIVSLDYSQIELRILAHMAGIDALKEAFRE 735 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIH M A+E+F V +E+++P++RR AK INF +IYGIS F LA LRIPR EA +I Sbjct: 736 GQDIHAMTASEMFNVPMEEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRGEAQAFID 795 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS--PKSSIRNINERAAINAP 891 RYF RFPGI Y+++T F +++ VET+FGR IH EI++ P++ +RAAINAP Sbjct: 796 RYFERFPGIKTYMDETVAFAKEHKRVETLFGRIIHTPEISASGPRA---GFAKRAAINAP 852 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV---PEEEITTASQIIVHSM 948 IQG+AADI RRAM+ + ++ + + KMLLQ+HDEL+FEV E+++ A++ + M Sbjct: 853 IQGTAADIIRRAMVRMPGAIAE--IPAKMLLQVHDELIFEVEQGAEDDLIAAARSV---M 907 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A P + L VPL V+ +W E Sbjct: 908 EGAAEPVVKLDVPLVVDAGRGKSWAE 933 >gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW] gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW] Length = 987 Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/981 (39%), Positives = 592/981 (60%), Gaps = 44/981 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+LVDGS FI+RA++A P L+R DG PVNA+ GF NML KLL + E++A VIFD Sbjct: 36 LYLVDGSGFIFRAYHALPPLNRP-DGTPVNAVLGFTNMLMKLLAELKAEAVA----VIFD 90 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + FRNE YPDYKANRP+ PE L PQ ++R A AF +P +E++G+EADD+IATY Sbjct: 91 AKRLNFRNEFYPDYKANRPEPPEDLRPQFAIIREAVDAFCLPCLELEGYEADDLIATYAR 150 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +A ++G VT++S+DKDLMQLV L D +K I E V +K+G+PPEK+V +QAL Sbjct: 151 LAREQGRPVTVVSSDKDLMQLVRDGVRLMDPMKGRLIGPEEVAEKFGVPPEKVVDVQALA 210 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DN+PG+PGIG KTAA L+ EYG+LE +L A I+Q RR+ +LE AE AR+S++L Sbjct: 211 GDSVDNVPGVPGIGVKTAAQLITEYGDLETLLERAGEIRQAGRRQKLLENAELARISKRL 270 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 V L VP+ +PL+ L + + + +LI +LK F +I++V D ++D Sbjct: 271 VRLDDAVPVPVPLDRLRVREPDHHKLIDWLKVQGFRSVIHKVEAELAADG-----TLVDG 325 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERLQKLSQYPINN 365 D T + + ++ + + + PQ ER++ Sbjct: 326 AAPAPAPAGRAPRTDVRTALDSRSYAPAATPVPEARDDGVAPQP---ERVE--------- 373 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---------LDQ 416 Y + + + +W+++ G+ + TD + + + I++S + Sbjct: 374 --YELVQDLDALDRWIERAREAGTVAVDTETDGLTPVSAGLVGISLSVEPGRACYIPVQH 431 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 D + K T +DL + L+ LK E+ LK+G N+K+D + Sbjct: 432 IDPATPKGATGGLDLG---GTPPPPPQIALADALARLKPLLEDPAVLKVGQNVKFDWQIF 488 Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 R+GI+M +D ML+SYVL +G H + +A + L +T E+ + KS I D++ Sbjct: 489 ARHGIAMAPIDDTMLISYVLGTGLHGHGMDELALRHLGHTTIKYDEVTGTGKSRITFDRV 548 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 + +++A E++++ L+L +L+ L+ + ++ +YE +++P++ VV++ME G+ +D+ Sbjct: 549 PLDKARDYAAEDADITLRLHRVLKHDLVRQHMVTLYETVERPLVPVVARMESRGVLVDRA 608 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 +L+Q+S++ ++ +L +E I L+ FN+ SPKQLG+ILF ++K P G+K K+G W T Sbjct: 609 VLRQMSSDFAQRMLEMEAEIQKLAPRAFNVGSPKQLGEILFDEMKLPGGSKGKSGAWGTD 668 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + LE + I + +L+WRQL+K+KSTY D+L I+ RT RVHT ++LA+T TGRL Sbjct: 669 SGVLEGLAEQGVEIAQKVLDWRQLAKLKSTYTDALAEQIDARTGRVHTSFALAATATGRL 728 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIPI+T+ G+KIRRAF++ P L+S DYSQIELR++A +A + L + F + Sbjct: 729 SSTDPNLQNIPIRTEEGRKIRRAFVARPGHLLLSVDYSQIELRLVAEMAGVPALRRAFHD 788 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 +DIH M A+++FGV +++++ ++RR AK INF IIYGIS F L QL I EA +I+ Sbjct: 789 GIDIHAMTASQVFGVPLDQMTSEIRRKAKAINFGIIYGISGFGLGRQLGITPGEAGAFIR 848 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 +YF RFP + Y+E TK F R++GYV T+ GRR I + R ER AINAPIQ Sbjct: 849 QYFERFPELQTYMETTKAFAREHGYVTTLLGRRCWIQGIREKAPARRAYAERQAINAPIQ 908 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI +RAM + +L KL MLLQ+HDEL+FEVPE ++ + ++ ME A Sbjct: 909 GTAADIIKRAMARIEPALAAAKLDAAMLLQVHDELLFEVPEAQVEETAAVVRGVMEGAA- 967 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 L VPL + NW E Sbjct: 968 ---GLGVPLVAEAGWAPNWAE 985 >gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4] gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4] Length = 793 Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/806 (45%), Positives = 524/806 (65%), Gaps = 28/806 (3%) Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +Q+L GDS+DN+PG+PGIG KTAALL+ E+G+LE +L A IKQKKRREN++E+AE AR Sbjct: 1 MQSLAGDSVDNVPGVPGIGLKTAALLINEFGDLETLLEKAETIKQKKRRENLIEFAEQAR 60 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 +S++LV L+ DVP+ +P+ L + D +GP+ + FLKA+ FT L RVA T D +AANIEP Sbjct: 61 VSKQLVTLKQDVPVELPVTDLQVSDIDGPKAVGFLKAMGFTTLTKRVAETTDAEAANIEP 120 Query: 302 VVLDI---NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 ++ + ++KG E T + D TPQ L R +K Sbjct: 121 DDFEVPGWDVPDHKGRMAEKAAPSTPAQSTEGAADTGDM-------MTPQALADARAEKA 173 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 + I+ +Y ++++ +++WV + +G +F T +++A ++ + I++ST K Sbjct: 174 ATSAIDTSAYEQVLSADRLKEWVAEAYEVGYVAFDTETTSLNAMQAELVGISLSTSTGK- 232 Query: 419 DTSFKVETIFIDLS-VHTSQDSTGKNTLT------KEILSYLKKFFENEHFLKIGHNIKY 471 +I L+ + D G L K+ L+ LK E+ LKI N+KY Sbjct: 233 -------ACYIPLAHIDGEGDLLGGGALIEGQIPLKDALAILKPMLEDPAVLKIAQNLKY 285 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 D LV+ YG+++ ++D ML+SY +D+G+ + + ++++WL + KE+ S KS I Sbjct: 286 DWLVMTHYGVNVTSYDDTMLLSYTVDAGKGGNGMDELSERWLGHKPIPFKEVCGSGKSMI 345 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 DK+ + +A E+++V L+LW +L+P+L +++ VYE L++PM+ V+++ME GI Sbjct: 346 TFDKVPLDKATAYAAEDADVTLRLWQVLKPRLASDRMATVYETLERPMVPVLARMEQRGI 405 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ +L ++S + ++ + LE I++L+GE FN+ SPKQLGDILF K+ P G KTKTG Sbjct: 406 AVDRQMLSRLSGDFAQGMAGLEAEIHELAGESFNIGSPKQLGDILFGKMGLPGGKKTKTG 465 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 W T+A LE + + + I+EWRQLSK+KSTY+D+LP +I+ T+RVHT Y+LA+T Sbjct: 466 AWSTSASVLEDLAAEGHTLPSKIVEWRQLSKLKSTYSDALPGYIHPDTKRVHTSYALAAT 525 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S EPNLQNIP++T G+KIR+AF++ KLISADYSQIELR+LAH+A I L Sbjct: 526 TTGRLSSSEPNLQNIPVRTAAGRKIRQAFVAEKGMKLISADYSQIELRVLAHMADIPQLK 585 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + FE LDIH M A+E+FG IE + P +RR AK INF IIYGIS F LA QL I R EA Sbjct: 586 KAFEEGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINFGIIYGISAFGLAAQLGISRGEA 645 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +DYIK YF RFPGI EY+E TK V GYV TIFGR+ HY ++N+ ++RN ERAAI Sbjct: 646 SDYIKTYFERFPGIKEYMEATKKQVHATGYVTTIFGRKAHYPDVNTKNPNMRNFYERAAI 705 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQGSAADI RRAM+ + L KL +MLLQ+HDEL+FEVPE ++ +I M Sbjct: 706 NAPIQGSAADILRRAMVRMEDRLLSSKLDAQMLLQVHDELIFEVPEVQVDATIPLIKDVM 765 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E AC P + L VPL+V+ + ++NW E Sbjct: 766 ENACDPVLKLSVPLQVDARAADNWDE 791 >gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1] gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1] Length = 941 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/974 (40%), Positives = 571/974 (58%), Gaps = 61/974 (6%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 HL+LVDGS +I+RA++ P L+ +H G+P A+ GF MLWKL+ + +H AVI Sbjct: 18 HLYLVDGSGYIFRAYHRLPPLTNRH-GIPAGAVYGFTTMLWKLINELHQADGPTHLAVIL 76 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D + TFRNE+Y YKA+RP PE L+PQ PL+R A +AF +P IE G EADDIIA Y Sbjct: 77 DASSKTFRNEMYDQYKAHRPPPPEDLVPQFPLIRDAVRAFSVPCIEELGLEADDIIACYA 136 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A + + VTI+S+DKDLMQL+ P L DT+ ++ EHV++K+G+ PE + + AL Sbjct: 137 EAALAQDWQVTIVSSDKDLMQLIRPGLDLLDTMNNRRLGREHVLEKFGVEPEALGDVLAL 196 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS+DN+PG+PGIG KTA+ L+Q++G L+ +L + +I + K +++++++A+ ARLSR+ Sbjct: 197 MGDSVDNVPGVPGIGPKTASQLIQQFGTLDAVLASTDQITKPKLKQSLIDHADNARLSRE 256 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LV L+ D P+ PL+ L L+ L +FL+ F L+ +V Sbjct: 257 LVRLKCDAPLPEPLDGLELKGLPPEPLRAFLEDQGFKSLLAKV----------------- 299 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 + D T+ T + L+ +E+ P + ++Q P N+ Sbjct: 300 -------------QGDGPATLPTGGPTMLA---LAPGAEEKPAPV-------IAQVPFNH 336 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 Y +V+ + +W+ G + TD +D + + +++ST K Sbjct: 337 KDYETVVDEAALDRWIADGFACGRIAVDTETDNVDPVRANLVGVSLSTAPGK-------- 388 Query: 426 TIFIDLSVHTSQD---STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 +I L+ H T + L+ LK E H LKIG NIKYD +VL +YG+ Sbjct: 389 ACYIPLA-HIGDGLLSETPRQIAMDAALAKLKPLLEAAHILKIGQNIKYDMVVLAKYGVD 447 Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 + ++D ML+SY LD+G H + +AQ+ L + K + + KS I DK++ Sbjct: 448 VAPYDDTMLLSYDLDAGLGGHGMDELAQRHLDHGCIEFKTVCGTGKSQISFDKVTLDVAT 507 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 E+A E+++V L+LW LL+ +L E VYE +D+P++ V++ ME GI++D++ L ++S Sbjct: 508 EYAAEDADVTLRLWQLLKGRLAPEAATRVYELIDRPLVPVLTGMERAGIKVDREELARLS 567 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 AE S LE I+ +G F + SPKQLGDILF K+ G K KTG + T +LE+ Sbjct: 568 AEFSGEATRLEAAIHAEAGTPFTVGSPKQLGDILFDKMGLKGGRKGKTGVYSTDVTELER 627 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + I + +L+WRQL+K++STY D+L IN T RVHT +S+A TGRL+S +PN Sbjct: 628 LAGDGVAIARLVLDWRQLTKLRSTYTDALQQQINPATGRVHTCFSMAVAQTGRLSSTDPN 687 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPI++D G++IR AF++ P K ++SADYSQIELR+ AH+A + L F DIH Sbjct: 688 LQNIPIRSDHGRRIRDAFVAEPGKLILSADYSQIELRLAAHMADVPALKDAFARGDDIHA 747 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 + A E+FG +V+ R AKTINFSI+YGIS + LA +L + R EA I RYF RF Sbjct: 748 LTAQEVFG----EVNRDTRARAKTINFSILYGISAWGLAGRLEVSREEAQGMIDRYFSRF 803 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 PGI+ YI T VR GYV T+FGR+ H I S K R ER AINAPIQG++ADI Sbjct: 804 PGINHYIAATLGQVRDQGYVSTLFGRKTHLPWIRSAKQGERQSAERQAINAPIQGTSADI 863 Query: 900 TRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 +RAM+ ++ +L L KMLLQ+HDELVFE+ E++ AS +I M A P + L Sbjct: 864 IKRAMVRMNPALAAAGLGDVKMLLQVHDELVFELAPEQVEPASAVIRAVMAGAAEPIVRL 923 Query: 959 RVPLKVNIKVSNNW 972 VPL V I +W Sbjct: 924 SVPLGVEIGTGPSW 937 >gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238] gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238] Length = 928 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/986 (40%), Positives = 593/986 (60%), Gaps = 78/986 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNML + ++ + + +H A Sbjct: 5 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLQRYVEGNVGGDV-THVA 63 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRNE+Y YKANR +PE L PQ+PL R AT+AF I EI+GFEADDIIA Sbjct: 64 VIFDKGSHTFRNEMYDQYKANREAMPEDLRPQMPLTRDATRAFNIACEEIEGFEADDIIA 123 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVC 181 T A G TIIS+DKD+MQLV + D +K KI D+E V +K+G+ P +++ Sbjct: 124 TLAVQARDAGGRCTIISSDKDMMQLVGGGVVMMDAMKGNKIIDVEGVEEKFGVGPNRVID 183 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +QAL GD+ DN+PG PGIG KTAALL+ EYG+LE +L A+ IKQ KRRE ++ + Sbjct: 184 VQALAGDTADNVPGAPGIGIKTAALLINEYGDLETLLDRAAEIKQPKRRETLINHRAQIE 243 Query: 242 LSRKLVML--RTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 LS++LV L + D+P T L+ L + D + L+ FL +EF + R++ +A Sbjct: 244 LSKRLVTLDDKMDLPFT--LDDLEVRDPDPDVLLEFLSQMEFRTMTKRISDKLGVEA--- 298 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 PV+ D+ + P + Sbjct: 299 -PVIEDVAVASD----------------------------------AP-----------A 312 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 Q + + Y + + +Q W+ ++ G + T +++ ++ + +++ + Sbjct: 313 QVAFDAEKYEWVKDAAALQVWIDRIYARGYVAVDTETTSLNEMRAELVGVSLCVM----- 367 Query: 420 TSFKVETIFIDLS--VHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKY 471 + +I L+ + D G + L + + L+ LK E++ LKIG N+KY Sbjct: 368 ---AGQACYIPLTHKGGAADDLFGDDALAEGQMDFEDCLAILKPMLEDDSILKIGQNMKY 424 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 D + R GI++ +D MLMSY +++G + H + +++++L +T K +L + KS+I Sbjct: 425 DAKIFKRVGITVDPIDDTMLMSYAMNAGLNRHSMDVLSEQYLGHTPIPIKPLLGAGKSAI 484 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D++ + ++A E++++ L+LW +L+P+L +++ VYE +++P++ V+++ME+ GI Sbjct: 485 TFDRVPVEEAVKYAAEDADITLRLWQVLKPQLHSKQVTSVYETMERPLVPVLAKMEMYGI 544 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ++D+D L ++S ++ + LE+ +Y+L+G KFN+ SP Q+G+ILF ++ G K KTG Sbjct: 545 KVDRDTLSRMSNAFAQKMAGLEDELYELAGGKFNVGSPAQVGEILFDQMGLEGGKKGKTG 604 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 ++ T A LE + ++ +L+WRQLSK+KSTY D+L HIN T RVHT YS+ Sbjct: 605 KYATGADILEDLAT-EHGFPGLVLDWRQLSKLKSTYTDALQTHINSETGRVHTSYSITGA 663 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIPI+TD G+KIR AFI+ K L++ DYSQIELRILAH+A I L Sbjct: 664 NTGRLSSTDPNLQNIPIRTDEGRKIREAFIADEGKVLVALDYSQIELRILAHVANIDALK 723 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F + DIH M A+E+F V +++++ +RR AK INF +IYGIS F LA LRIPR+EA Sbjct: 724 QAFRDGHDIHAMTASEMFNVPLDEMTSDVRRQAKAINFGVIYGISGFGLARNLRIPRAEA 783 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +I RYF RFPGI Y++ T F +++ VET+FGR+IH EIN+ K +RAAI Sbjct: 784 QGFIDRYFERFPGIRTYMDDTVAFAKEHNRVETLFGRKIHTPEINA-KGPGAGFAKRAAI 842 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AAD+ RRAMI + ++ L KMLLQ+HDELVFEV ++ M Sbjct: 843 NAPIQGTAADVIRRAMIRMDAAIA--HLPAKMLLQVHDELVFEVDKDAAHDLIAAAREVM 900 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A P + VPL V+ + W E Sbjct: 901 ENAANPVVKFDVPLVVDAGIGATWAE 926 >gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516] gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516] Length = 933 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/973 (39%), Positives = 571/973 (58%), Gaps = 51/973 (5%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+R DG PV A++GFCNML K + + A+H A Sbjct: 5 KGCHLHLIDGSAFIFRAYHALPPLTRPSDGAPVGAVSGFCNMLQKYIDTNSGADAATHVA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRNE++ YKANR ++PE L PQ+PL R AT+AF I E++ +EADD+IA Sbjct: 65 VIFDKGSQTFRNEMFDQYKANRSEMPEDLRPQIPLTRRATEAFNIACKEMENYEADDMIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 A G VTI+S+DKDLMQLV + D +K +ID + V +K+G+ P+++V + Sbjct: 125 ALACQARAAGGRVTIVSSDKDLMQLVGDGVEMLDPMKNRRIDRDGVFEKFGVFPDRVVDV 184 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DNIPG PGIG KTAALL+ EYG+LE +L A IKQ KRR+ ++EY L Sbjct: 185 QALAGDSVDNIPGAPGIGIKTAALLINEYGSLEELLERAEEIKQPKRRQTLIEYRAQIEL 244 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L D P+ L+ L + + + RL+ FL +EF + R++ +A + Sbjct: 245 SKRLVQLDCDTPLDFTLDDLEMREPDPERLLGFLAEMEFRTIARRISDKLGVEAPAM--- 301 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 G A E + + P Sbjct: 302 -----PERAAGPAAPVE------------------------------------EAVEAPP 320 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + +Y +I + ++QW+ ++ G + + I D+ + +A++ + Sbjct: 321 FEHAAYERIADAAALEQWIARVYDRGYVALRPIADSASETTCALVGLALAVEPGQAGYLP 380 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 + + S D L+ L+ E++ +K+ + K +L R+GI+ Sbjct: 381 LRHVGDSEQGLFGSSDLAEGQMDFDAALALLRPMLEDDSIMKVAQDAKAAMKLLGRHGIA 440 Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 + +D L+SY L+SG H + +++ + L + K ++ + KS+ D++ V Sbjct: 441 LAPVDDTHLLSYALNSGLHGHTLDTLSDRLLGHRPIELKSVVGTGKSARTFDRVPVEAVT 500 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E ++++L+LW L+ +L +++ VYE L++P+I V++ ME GI++D+D L ++S Sbjct: 501 PYAAEEADIVLRLWQALKQQLFRKQVTRVYETLERPLIPVLAGMERAGIRVDRDTLSRMS 560 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 S+ + LE +Y+L+G +FNL SPKQLG+ILF +L P G K KTG + T A LE Sbjct: 561 NAFSQKMAGLEAEVYELAGREFNLGSPKQLGEILFDELGLPGGKKGKTGAYGTGADVLED 620 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + ++ + IL+WRQ+SK+KSTY DSL +I T RVHT YS A TGRLAS EPN Sbjct: 621 LAT-EHDLPGRILDWRQISKLKSTYTDSLQGYIQPETSRVHTSYSQAGAATGRLASTEPN 679 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIP++T+ G++IR AF++ K L+S DYSQIELRILAH+A + L + F + DIH Sbjct: 680 LQNIPVRTEEGRRIREAFVADLGKVLVSLDYSQIELRILAHVAGLDALREAFRSGQDIHA 739 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 A+E+F V +E+++P +RR AK INF +IYGIS F LA LRIPR EA +I RYF RF Sbjct: 740 ATASEMFNVPLEEMTPDVRRQAKAINFGVIYGISGFGLARSLRIPREEAQGFINRYFERF 799 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 PGI +Y+++T F +++G+V+T+FGR+IH EIN+ K RAAINAPIQG+AAD+ Sbjct: 800 PGIRDYMDETVAFAKEHGFVQTLFGRKIHTPEINA-KGPGAGFARRAAINAPIQGTAADV 858 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 RRAM+ + ++E L MLLQ+HDEL+FEV E + ME A +P + Sbjct: 859 IRRAMVRMPAAIE--GLPATMLLQVHDELLFEVEEGAVEALVAAAREVMEAAAMPVVQFT 916 Query: 960 VPLKVNIKVSNNW 972 VPL V+ NW Sbjct: 917 VPLVVDAGQGTNW 929 >gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] Length = 932 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/991 (40%), Positives = 602/991 (60%), Gaps = 84/991 (8%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS+FI+RA++A P L+RK DG+P+ A+AGFCNML + ++ + +H A Sbjct: 5 KGHHLHLIDGSAFIFRAYHALPPLTRKSDGIPIGAVAGFCNMLHRYVEGNTGPDAPTHVA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT AF I E++G+EADDIIA Sbjct: 65 VIFDKGSHTFRNDMYDQYKANREAMPEDLRPQIPLTRTATAAFNIACKELEGYEADDIIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A G TIIS+DKDLMQLV + D +K + ID + V +K+G+ PE++V + Sbjct: 125 TLAVQARAAGGRCTIISSDKDLMQLVGDGVEMLDAMKNKTIDRDGVFEKFGVYPERVVDV 184 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+L+ +L A IKQ KRR+ ++++AE RL Sbjct: 185 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLDALLERAGEIKQPKRRQTLIDHAEQIRL 244 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 SR L+L D N P I F T D + + +P Sbjct: 245 SRS----------------LVLLDENTP--IDF--------------TIDDLEVRDPDPE 272 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ-----K 357 L + +E+ +F +LS + +++ + P + Sbjct: 273 QL---------LGFLSEM---------EFRTLSKRVAEVLGREAPAIPEAPAPAVADAPQ 314 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ P ++ Y ++ + + ++ W+ ++ +G + T +D ++ + +++S Sbjct: 315 IADVPFDHSKYEQVSDAEALRVWLDRIYEVGYVAVDTETTGLDELTAELVGVSLSVEPG- 373 Query: 418 DDTSFKVETIFIDLS--VHTSQDSTGKNTLT------KEILSYLKKFFENEHFLKIGHNI 469 + +I L+ S D G + L +E L L E+ LKIG N+ Sbjct: 374 -------QACYIPLTHKASRSDDLFGSDDLAPGQMPFEEALQLLTPMLEDPAILKIGQNM 426 Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526 KYD + + GI++ +D MLMSY + +G H + ++++++L +T K +L S KS Sbjct: 427 KYDGKIFAQLGITVAPIDDTMLMSYAMHAGLHGHGMDTLSERYLGHTPLPIKPLLGSGKS 486 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 ++ DK+ +A E+++V L+LW L +P+L ++ VYE L++P++ V++QME Sbjct: 487 AVTFDKVPMEDAVPYAAEDADVTLRLWKLFKPQLHRAEVTKVYETLERPLVPVLAQMERA 546 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 GI +D+D L ++S ++ + LE +I++L+GE FN+ SP QLG+ILF K+ G K K Sbjct: 547 GILVDRDTLSRMSNAFAQKMAGLEADIHELAGETFNVGSPAQLGEILFGKMGLDGGKKGK 606 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 TG++ T A LE + ++ + + +L+WRQLSK+KSTY D+L +H+N T RVHT YS+A Sbjct: 607 TGKYSTGADVLEDLAT-EHDLARRVLDWRQLSKLKSTYTDALQDHVNANTGRVHTCYSIA 665 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 TGRLAS +PNLQNIPI+++ G++IR AF++P K L++ DYSQIELRILAHIA+I Sbjct: 666 GAATGRLASTDPNLQNIPIRSEEGRRIREAFVAPEGKVLVALDYSQIELRILAHIAQIDA 725 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + FE DIH M A+E+F V +++++P++RR+AK INF +IYGIS F LA LRIPR+ Sbjct: 726 LKEAFERGDDIHAMTASEMFDVPMDQMTPEIRRNAKAINFGVIYGISGFGLARNLRIPRA 785 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA +I RYF RFPGI Y++ TK F +++G+V+T+FGR+I+ I + K RA Sbjct: 786 EAQGFIDRYFERFPGIRTYMDDTKAFAKEHGFVQTLFGRKINTPNIGA-KGPQAGFAARA 844 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV---PEEEITTASQI 943 AINAPIQG+AAD+ RRAMI + +++ D L KMLLQ+HDEL+FEV E+ + A++ Sbjct: 845 AINAPIQGTAADVIRRAMIRMPEAIAD--LPAKMLLQVHDELLFEVEKGAEDALIAAARE 902 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME A P + L V L V+ V NW E Sbjct: 903 V---MENANDPVVKLDVKLTVDAGVGANWAE 930 >gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2] gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2] Length = 938 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/992 (40%), Positives = 596/992 (60%), Gaps = 82/992 (8%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLPV A++GF NML + ++ + A+H A Sbjct: 7 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFVNMLQRYVEGNNGADAATHVA 66 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I E++GFEADDIIA Sbjct: 67 VIFDKGSHTFRNDMYDQYKANRDAMPEDLRPQIPLTRTATKAFNIACEEMEGFEADDIIA 126 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T ++ A G VTI+S+DKDLMQLV + D +K ++ID + V++K+G+ P ++V + Sbjct: 127 TLSHQARDAGGRVTIVSSDKDLMQLVGDGVEMLDPMKNKRIDSDGVVEKFGVGPNRVVDV 186 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG+LE++L A IKQ KRRE ++E E L Sbjct: 187 QALAGDSVDNVPGAPGIGIKTAALLINEYGDLESLLDRAEEIKQPKRRETLIENREQIEL 246 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S+K L+ DC ++ L+ D + + +P Sbjct: 247 SKK----------------LVQLDCE----MTLAFGLD------------DLEVKDPDPE 274 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 VL + TE++ T K ++D+ + Sbjct: 275 VL---------MGFLTEMEFRTVTK-----RIADKLGLEAPVVEAAAPAATEVATPEAVA 320 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + D+Y + + +Q W+ ++ G + T ++ ++ + I++ Sbjct: 321 FDPDAYECVRDAAALQVWIDRIRARGYVAVDTETTGLNEMIAELVGISLCVE-------- 372 Query: 423 KVETIFIDLSVHT--SQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKL 474 + +I L+ + S D G + + + E L+ LK ++ +KIG N+KYD Sbjct: 373 AGQACYIPLTHKSAASDDLFGSDEMAEGQMDFDECLAMLKPVLQDPAVIKIGQNMKYDAK 432 Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 + R I + +D MLMSY +++G+ +H + ++++++L +T K +L S KS+I D Sbjct: 433 IFARLDIDVAPIDDTMLMSYAMNAGKHNHGMDTLSERYLGHTPIPIKPLLGSGKSAITFD 492 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 ++ ++A E++++ L+LW +P+L + ++ VYE +++P++ V++QME GI++D Sbjct: 493 RVPVDDAVKYAAEDADITLRLWQQFKPQLHMNRVTTVYETMERPLVPVLAQMERHGIKVD 552 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK--LKFPSGAK---TK 646 +D L ++S ++ + LE+ I +++G FN+ SPKQLG+ILF + L+ P G K K Sbjct: 553 RDTLSRMSNAFAQKMAGLEDEIQEMAGRPFNVGSPKQLGEILFDEMGLEMPDGKKPSTGK 612 Query: 647 TGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 TG + T A LE + D P + IL+WRQLSK+KSTY D+L HIN T RVHT YS+ Sbjct: 613 TGAYSTGADVLEDLATLHDMP--RRILDWRQLSKLKSTYTDALQEHINAETGRVHTSYSI 670 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A TGRLAS +PNLQNIP++++ G++IR AF++ K ++S DYSQIELRILAHIA I Sbjct: 671 AGANTGRLASTDPNLQNIPVRSEEGRRIREAFVAEDGKVIVSLDYSQIELRILAHIAGID 730 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L Q F + +DIH M A+E+F V +++++P +RR AK INF +IYGIS F LA LRIPR Sbjct: 731 ALKQAFLDGIDIHAMTASEMFDVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRIPR 790 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA +I RYF RFPGI +Y++ T F ++N YV+T+FGR+I+ EIN+ K +R Sbjct: 791 GEAQGFIDRYFERFPGIRKYMDDTVAFAKENSYVQTLFGRKINTPEINA-KGPHAGFAKR 849 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE---EEITTASQ 942 AAINAPIQG+AAD+ RRAMI + ++ L KMLLQ+HDEL+FEV E +++ TA++ Sbjct: 850 AAINAPIQGTAADVIRRAMIRMPDAIA--GLPAKMLLQVHDELIFEVEEGAVDDLITAAR 907 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME A P + L V L V+ NW E Sbjct: 908 DV---MENASDPAVKLDVKLAVDAGQGANWAE 936 >gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083] gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083] Length = 945 Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/978 (40%), Positives = 577/978 (58%), Gaps = 60/978 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML + ++ + + +H A Sbjct: 20 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLQRYVEGNAGSDV-THVA 78 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I EI+GFEADDIIA Sbjct: 79 VIFDKGSHTFRNDMYDQYKANRDAMPEDLRPQMPLTRAATKAFNIACEEIEGFEADDIIA 138 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A + G TIIS+DKD+MQLV +YD +K+ +ID + V +K+G+ PE +V + Sbjct: 139 TLARQAREAGGRCTIISSDKDMMQLVGDGVEMYDAMKQRRIDRDGVFEKFGVFPEGVVDV 198 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ EYG LE +L A IKQ KRR+ ++++ L Sbjct: 199 QALAGDSVDNVPGAPGIGIKTAALLINEYGTLEELLDRAEEIKQPKRRQTLIDHRAQIEL 258 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++LV L ++ + L+ L + D L+ FL +EF L R++ D I Sbjct: 259 SKRLVTLDGNMTLDFTLDDLEVRDPIADELLEFLAQMEFRTLTKRISEALDAPMPEIA-- 316 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + IKT + P+ P Sbjct: 317 --------------------EAPIKTGSLDA-------------PEAA-----------P 332 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + + Y + + + W+ G + T ++ + + I++ + K + Sbjct: 333 FDAEKYECVRDMGALHTWIDAAYARGYVAVDTETTGLNDMIADLVGISMCSEAGK---AC 389 Query: 423 KVETIFIDLSVHT--SQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 + D S D L EI ++ LK E+ +KIG N+KYD + RY Sbjct: 390 YIPLTHKDASTDDLFGSDELADGQLDLEIAIAALKPLLEDPSVMKIGQNMKYDAKIFARY 449 Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536 GI + +D ML+SY +G +H + ++++++L +T K +L + KS+I D++ Sbjct: 450 GIEIAPIDDTMLISYAQHAGLHNHGMDALSERYLGHTPIPIKPLLGTGKSAITFDRVPID 509 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +A E++++ L+LW L+P L + VYE +++P++ V++QME GI++D+D+L Sbjct: 510 HATPYAAEDADITLRLWQHLKPTLHSARTTRVYETMERPLVPVLAQMERYGIKVDRDVLS 569 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 ++S ++ + LE I++++G FN+ SP Q+G+ILF ++ G K K G++ T A Sbjct: 570 RMSNAFAQKMAGLEAEIHEMAGHSFNVGSPAQVGEILFDEMGLEGGKKGKNGKYSTGADI 629 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + ++ + + IL+WRQLSK+KSTY D+L +HIN T RVHT YS+A TGRLAS Sbjct: 630 LEDLAT-EHEMPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGASTGRLAST 688 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIPI+++ G++IR AFI+ K L++ DYSQIELRILAH+A I L Q F + D Sbjct: 689 DPNLQNIPIRSEEGRRIREAFIAEEGKVLVALDYSQIELRILAHVAGIDSLKQAFRDGHD 748 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH M A+E+F V +++++ +RR AK INF +IYGIS F LA LRIPRSEA +I RYF Sbjct: 749 IHAMTASEMFDVPLDEMTADVRRQAKAINFGVIYGISGFGLARNLRIPRSEAQGFIDRYF 808 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 RFPGI EY+ T F + N VET+FGR IH IN+ K +RAAINAPIQG+A Sbjct: 809 DRFPGIKEYMNDTTAFAKANDRVETLFGRVIHTPNINA-KGPQAGFAKRAAINAPIQGTA 867 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI RRAMI + +++D KMLLQ+HDEL+FEV ++ + + ME A P + Sbjct: 868 ADIIRRAMIRMPDAIKDQP--AKMLLQVHDELLFEVEKDGVDQLIKTAKDIMENAADPVV 925 Query: 957 NLRVPLKVNIKVSNNWQE 974 L VPL V+ NW E Sbjct: 926 KLDVPLIVDAGQGANWAE 943 >gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] Length = 968 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/987 (38%), Positives = 568/987 (57%), Gaps = 70/987 (7%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + + HL LVDGS +I+RAF+A P ++R DG+PVNA+ GF ML L + + +H Sbjct: 32 ETQPHLILVDGSGYIFRAFHALPPMTRP-DGVPVNAVFGFTTMLGNFL----TKHVGTHI 86 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 AV+FD VTFR+EIYPDYKA+RP+ P L+PQ L+R AT AFG+ +E GFEADD+I Sbjct: 87 AVVFDSSRVTFRSEIYPDYKAHRPEPPPELVPQFALIREATAAFGVACVEQPGFEADDLI 146 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 A Y + G VTI+S+DKDLMQLV P L D +K++ I V++K+G+ P+K+V Sbjct: 147 AAYAKGFVERGGQVTIVSSDKDLMQLVRPGVQLLDPIKQKPIREPEVLEKFGVTPDKVVD 206 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +QAL GDS DN+PG+PGIG KTAA L+ EYG+LE +L A +I+Q KRRE ++ +AE AR Sbjct: 207 VQALAGDSTDNVPGVPGIGVKTAATLILEYGDLEGLLAAAPQIRQPKRREALINFAEQAR 266 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 +SR+LV+L + P+ P++ L+ RL FL+ F L++R+ D D A+ P Sbjct: 267 ISRRLVLLDENAPLPAPVDQLLARAPEPGRLAGFLREQGFRSLLHRMG--LDGDTADSAP 324 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 V T + + F Sbjct: 325 VSRPRFATNGAVPEPAATAEPPPAADAAPFGP---------------------------- 356 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 Y + +Q ++ G + TD++DA ++ + ++++ + Sbjct: 357 ------YETVTELAALQPFLDAARAGGLLAIDTETDSLDALNANLVGLSLAVAPGR---- 406 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLT----------KEILSYLKKFFENEHFLKIGHNIKY 471 ++ L H +G E++ L+ + LKI HN KY Sbjct: 407 ----ACYVPLR-HGPPPGSGDLLAEAPAAPAQLSQAEVVEALRPLLADPAVLKILHNAKY 461 Query: 472 DKLVLHR---YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525 D VL R + + +D ML+SY +D+GR H + ++ + L + E+ + + Sbjct: 462 DLEVLARPEHGALDITPVDDTMLISYSMDAGRHGHGMDELSLRHLGHRPIPFDEVTGTGR 521 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 + IP +++ + +A E+++V L+LW LRP+L ++ L +YE++++ M+ V+ ME+ Sbjct: 522 ARIPFSQVALDKATAYAAEDADVTLRLWQALRPRLRPDRSLALYEQVERRMVAVLRDMEM 581 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 GI++D L ++ + S+ ++ LE+ I++L+G+ FN+ SPKQLG+ILF + K P G + Sbjct: 582 AGIKVDGAELARIGEDFSQRMVVLEQEIHELAGKPFNVGSPKQLGEILFDEQKLPGGKRG 641 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 K G W T A LE + + + + +L WRQL+K+KSTY + L I++R RVHT +S+ Sbjct: 642 KNGAWGTDASVLEDLAARGHELPRRVLHWRQLAKLKSTYVEGLAAQIDRRDGRVHTDFSM 701 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A T TGRL+S EPNLQNIPI+T+ G +IRRAF++ P L++ADYSQIELR+LAH+A + Sbjct: 702 AVTSTGRLSSTEPNLQNIPIRTEEGVRIRRAFVAEPGHVLLAADYSQIELRLLAHLADVP 761 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F DIH AA+IFG+ +KV + RR AKTINF IIYG+S F LA +L I Sbjct: 762 SLRDAFAKGEDIHSRTAADIFGLAPDKVDKEARRRAKTINFGIIYGMSAFGLAARLGIGP 821 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA I YF ++PGI E +E+ K+ R+ GYV + FGR++ D I + + + R ER Sbjct: 822 GEARGIIDAYFSQYPGILEEMERLKSEAREKGYVLSPFGRKLWIDGIQAKEQARRGNAER 881 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AAINAP QG AA+I +RAM+ + +L L+ +MLLQ+HDEL+FEVPE E+ ++ + Sbjct: 882 AAINAPFQGGAAEIIKRAMVRMPAALRAAGLSARMLLQVHDELLFEVPEAEVDATAECVR 941 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972 ME LRVPLK I NW Sbjct: 942 QVMESVA----TLRVPLKAEIGHGANW 964 >gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1] gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1] Length = 924 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/981 (39%), Positives = 560/981 (57%), Gaps = 68/981 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K+ HL LVDGS FI+RAF+A P ++ DG PVNA+ GF NML +LL +E +H A Sbjct: 5 KQVHLILVDGSGFIFRAFHALPPMTSP-DGTPVNAVYGFSNMLSRLL----REHAGTHLA 59 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD TFRN++Y +YKA+RP+ PE L PQ LVR AT AFG+PA+E G+EADD+IA Sbjct: 60 VIFDAGRHTFRNDLYSEYKAHRPEPPEELRPQFSLVRDATAAFGVPALEEAGWEADDLIA 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 Y G TI S+DKDLMQL+ P + D +K I + V K+G+ P+++ + Sbjct: 120 AYARKVTDAGGQCTIYSSDKDLMQLIRPGVMMMDPIKNRPIGEKEVEAKFGVSPDRVAQV 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GD +DN+PG+PGIG KTA+ L+ EYG+L+ IL A +K +RR+N+L +A+ ARL Sbjct: 180 QALIGDPVDNVPGVPGIGPKTASALMAEYGSLDGILAGAEGMKASRRRDNLLAHADMARL 239 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S +LV LR D P PL L+ D + RL ++L + F+ L+ R+ A P Sbjct: 240 SLELVTLREDAPCPEPLSALVCCDVDMERLGAWLAEMGFSSLLQRMGLK-----AKPRP- 293 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 +I++ P + E L P Sbjct: 294 -------------------------------------RISAHAHPAAV-AEPEGALPPIP 315 Query: 363 INN-DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 + Y + + + ++QWV++ T G + TD +D + P+ + IS Q Sbjct: 316 TEDYGPYETVTDPEVLRQWVEQARTSGVCAVDTETDGLDPL-TAPL-VGISLAPQCGRAC 373 Query: 422 FKVETIFIDL--SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 + +DL S+ T Q G L L+ F + LK+ N K+D LVL + Sbjct: 374 YIPLGHQVDLMDSLGTPQMPVGT------ALEILEPLFADPSVLKVFQNAKFDLLVLTQA 427 Query: 480 G-ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535 G + +D ML+SY +G+ + +++ L ++ E+ + ++ + ++ Sbjct: 428 GSVQPAPIDDTMLISYAQSAGQHGQGMDELSRLTLDHSPIPYDEVTGTGRNRVVFSQVDI 487 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 ++ +A E+++V L+LW +LRP+L + L +YE +++P+I +++ ME GI +D D L Sbjct: 488 ARATPYAAEDADVTLRLWQVLRPRLRTSRALALYEEMERPLIPILADMERAGIAVDADDL 547 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 + +S E ++ + +E I+ L+G +FN+ SPKQLG+ILF ++ P G +TK G W T + Sbjct: 548 RAMSIEFAQRMGVIEAEIHKLAGREFNVGSPKQLGEILFDEMGLPGGKRTKAGAWGTDSS 607 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 L+ + + + IL WRQL+K+KSTYAD+L N IN T RVHT + +A T TGRL+S Sbjct: 608 VLQDLADQGHDLPARILAWRQLAKLKSTYADALLNQINPATGRVHTSFQMAVTTTGRLSS 667 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIPI+T+ G +IRRAF++ P L+SADYSQIELR+LA +A I L + F Sbjct: 668 NDPNLQNIPIRTEEGGRIRRAFVAAPGHLLVSADYSQIELRLLADVANIPALREAFALGQ 727 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+E+FG+ +E + P RR AK INF IIYGIS F L QL IP EA YI Y Sbjct: 728 DIHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGISAFGLGRQLGIPPGEARGYIDAY 787 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PGI +Y+E+ K R GYV T FGRR I + RN ER AINAP+QG Sbjct: 788 FARYPGIRDYMERVKAEARAKGYVTTPFGRRCWVPGIADKSAVRRNYAERQAINAPLQGG 847 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI +RAM+ + +L D L +MLLQ+HDELVFEV +++ + ++ ME A Sbjct: 848 AADIIKRAMVRIPAALSDAGLDGRMLLQVHDELVFEVRKDDADRLAALVRQVMESAA--- 904 Query: 956 INLRVPLKVNIKVSNNWQEEN 976 L VPL V NW + + Sbjct: 905 -TLSVPLVVETGTGTNWADAH 924 >gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] Length = 941 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/986 (39%), Positives = 584/986 (59%), Gaps = 78/986 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLPV A++GFCNML + ++ + + +H A Sbjct: 18 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFCNMLQRYVEGNVGGDV-THVA 76 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD + TFRN++Y YKANR +PE L PQ+PL R AT+AF I EI+GFEADDIIA Sbjct: 77 VIFDKGSHTFRNDMYDQYKANREAMPEDLRPQMPLTRDATKAFNIACEEIEGFEADDIIA 136 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVC 181 T A G TIIS+DKD+MQLV + D +K KI D+E V +K+G+ P +++ Sbjct: 137 TLAVQARDAGGRCTIISSDKDMMQLVGGGVVMMDAMKGNKIIDVEDVEEKFGVGPNRVID 196 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +QAL GD+ DN+PG PGIG KTAALL+ EYG+LE +L A I Q KRR+ ++++ Sbjct: 197 VQALAGDTADNVPGAPGIGIKTAALLINEYGDLETLLDRAGEITQPKRRQTLIDHRAQIE 256 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LS++LV L D + +P T D + + EP Sbjct: 257 LSKRLVTL--DDKMDLPF------------------------------TLDDLEVRDPEP 284 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS-KINSEQTPQKLFLERLQKLSQ 360 VL +E + +F +++ + S K+ Q Sbjct: 285 DVL-----------LEF-------LSQMEFRTMTKRISDKLGVAAPAVADVAVAADAPEQ 326 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 + + Y + + +Q W+ ++ G + T +++ ++ + +++ T Sbjct: 327 PAFDAEKYEWVKDAAALQVWIDQIYARGYVAVDTETTSLNEMRAELVGVSLCV------T 380 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKL 474 + + I + + D G + L + E L+ LK E++ LKIG N+KYD Sbjct: 381 AGEACYIPLTHKSGAADDLFGDDALAEGQMDFEECLAILKPMLEDDSILKIGQNMKYDAK 440 Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 + R GI + +D MLMSY +++G H + +++++L +T K +L + KS+ + Sbjct: 441 IFKRVGIDVDPIDDTMLMSYAMNAGLHRHGMDVLSEQYLGHTPIPIKPLLGAGKSAKTFN 500 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 ++ +A E++++ L+LW + +P+L +++ VYE +++P++ V+++ME+ GI++D Sbjct: 501 RVPVEDAVRYAAEDADITLRLWEVFKPQLHRKQVTSVYETMERPLVPVLAKMEMHGIKVD 560 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +D L ++S ++ + LE+ +Y+L+G KFN+ SP Q+G+ILF ++ G K K G++ Sbjct: 561 RDTLSRMSNAFAQKMAGLEDELYELAGGKFNVGSPAQVGEILFDQMGLEGGKKGKNGKYA 620 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A LE + ++ + +L+WRQLSK+KSTY D+L HIN T RVHT YS+ TG Sbjct: 621 TGADVLEDLAT-EHDLPGRVLDWRQLSKLKSTYTDALQTHINAETGRVHTSYSITGANTG 679 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+TD G+KIR AFI+ K L++ DYSQIELRILAH+A I L Q F Sbjct: 680 RLSSTDPNLQNIPIRTDEGRKIREAFIADEGKVLVALDYSQIELRILAHVANIDALKQAF 739 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DIH M A+E+F V +++++P +RR AK INF +IYGIS F LA LRIPR+EA + Sbjct: 740 RDGHDIHAMTASEMFNVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGF 799 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I RYF RFPGI Y++ T F +++ VET+FGR+IH EIN+ K +RAAINAP Sbjct: 800 IDRYFERFPGIRTYMDDTVAFAKEHNRVETLFGRKIHTPEINA-KGPGAGFAKRAAINAP 858 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE---EEITTASQIIVHSM 948 IQG+AAD+ RRAMI + ++ L KMLLQ+HDELVFEV + E++ A++ + M Sbjct: 859 IQGTAADVIRRAMIRMDDAIA--HLPAKMLLQVHDELVFEVDKDAAEDLIAAARDV---M 913 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A P + VPL V+ + W E Sbjct: 914 ENAANPVVKFDVPLVVDAGIGATWAE 939 >gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] Length = 948 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/995 (39%), Positives = 582/995 (58%), Gaps = 74/995 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + HL+LVDGSS+I+RA++ P L+ DG PV A+ G+ MLWKL + K +H Sbjct: 1 MADKQHLYLVDGSSYIFRAYHRLPPLT-DPDGTPVGAVYGYTTMLWKLADDLDKADGPTH 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+ D + +FRNEIY YKANRP PE L+PQ PL+R AT+AF +P IE + EADD+ Sbjct: 60 LAVVLDKSSQSFRNEIYDQYKANRPDPPEDLVPQFPLIRDATRAFSLPMIEEENVEADDM 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----LYDTVKEEKIDIEHVIKKWGIPP 176 IA+Y A+ G+ VTI+S+DKDLMQLV + DT+K +I ++ V K+G+PP Sbjct: 120 IASYAREAQARGWDVTIVSSDKDLMQLVGEKDGAKIDMLDTMKSARIYVDEVKDKFGVPP 179 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E + + AL GDS+DNIPGI G+G KTA+ L+ E+G+L L A +K+ K +E +LE+ Sbjct: 180 ELVGDVLALMGDSVDNIPGIFGVGPKTASKLIDEHGSLTAALDAAEDMKKSKLKERLLEH 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + A LSR LV LR D P+ I +E + L+ G L +FL+ FT L+ R+ DA Sbjct: 240 RKDAELSRVLVTLREDCPLPIAIEDMKLDGIPGEPLAAFLEKHGFTSLLRRL------DA 293 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ-TSKINSEQTPQKLFLERL 355 + P DR + ++ + D TS+ N Sbjct: 294 GSGSP-------------------DRPNDLNPAKVETKGDSGTSEGNR------------ 322 Query: 356 QKLSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 Q L ++P ++ +Y + + ++ W+ K + T +DA + + I+++T Sbjct: 323 QPLPEFPAVDRSAYETVQTMERLEHWIAKCRAARIIAVDTETSALDAMRADLVGISLAT- 381 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK--------EILSYLKKFFENEHFLKIG 466 E +I L H + G + ++ + ++ LK E++ LKIG Sbjct: 382 -------GANEACYIPLG-HLNDGGGGSDMFSEKPEQVPLDDAVAALKPLLESDAVLKIG 433 Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS-----SHDIASIAQKWLSYTR---K 518 NIKYD VL RYGI++ +D M++S+ LD+GRS H + ++++ L +T K Sbjct: 434 QNIKYDLNVLARYGIAVAPIDDTMILSFDLDAGRSEGGVGGHGMDELSERHLGHTPLSFK 493 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 E+ + + IP ++ + E+A E+++V +L L+P+L +E +YER+D+P+I Sbjct: 494 EVCGTGRKQIPFGEVPLDKATEYAAEDADVTWRLHQHLKPRLAIEHGARIYERVDRPLIP 553 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 VV+QME GI++D+ L ++S E + LE+ I++L+G++F + SPKQLG++LF L Sbjct: 554 VVAQMERHGIKVDRARLAKLSEEFATETAKLEKTIHELAGKEFTVGSPKQLGEVLFDDLG 613 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 G K K+GQ+ T LE+++ I +LEWRQL+K+KSTY D+L IN T R Sbjct: 614 HKGGKKGKSGQYSTDQSVLERLSGDGAEIADKVLEWRQLTKLKSTYTDALQQAINPDTGR 673 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT YSL TGRL+S +PNLQNIPI+T +G++IR AF+ L++ADYSQIELR+ Sbjct: 674 VHTSYSLVGAQTGRLSSTDPNLQNIPIRTPIGRQIREAFVPENGNVLLAADYSQIELRLA 733 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH+A + L + F DIH A E++G + R AKTINF+I+YGIS + LA Sbjct: 734 AHMADVPELKEAFAEGEDIHARTAREMYG----EADRDTRARAKTINFAILYGISRWGLA 789 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 +L+I EA + I YF RFPGI YI +T VR+ GY ET+FGR+ + I S + Sbjct: 790 GRLKIEPDEAQELIDTYFKRFPGIQSYIHETLETVRERGYSETLFGRKTWFPRIGSKNQA 849 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEI 937 R +ERAAINAPIQG++ADI +RAM + +LED L +MLLQ+HDELVFE+PE ++ Sbjct: 850 ERQGSERAAINAPIQGTSADIIKRAMARMMPALEDAGLEHVRMLLQVHDELVFELPEGDV 909 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 AS II M +A LP + L VPL + I +W Sbjct: 910 EAASPIIERVMAEAALPAVELSVPLGIEIGTGASW 944 >gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] Length = 937 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/986 (39%), Positives = 569/986 (57%), Gaps = 63/986 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M ++NHL+LVDGSS+I+RA++ P L+ G+PV A+ G+ MLWKL ++ +H Sbjct: 1 MSEKNHLYLVDGSSYIFRAYHRLPPLTNPR-GVPVGAVYGYTTMLWKLAKDLHDADGPTH 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AVI D+ + +FRNEIY YKANRP PE L+PQ PL+R AT+AF +P IE++GFEADD+ Sbjct: 60 LAVILDHSSESFRNEIYDQYKANRPDPPEDLVPQFPLIRDATRAFSLPCIEMEGFEADDL 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLV-----SPTTCLYDTVKEEKIDIEHVIKKWGIP 175 IA+YT A +EG+ VTI+S+DKDLMQL+ P + DT+K ++ I+ V +K+G+ Sbjct: 120 IASYTEAAVREGWDVTIVSSDKDLMQLIREPAGGPHVDMLDTMKNVRLGIDAVNEKFGVT 179 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P+ + + AL GDS+DN+PG+ G+G KTA L+QEYG+L L A +K K REN++E Sbjct: 180 PDLVGDVLALMGDSVDNVPGVRGVGPKTATKLIQEYGSLTAALDGAETMKPGKLRENLIE 239 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 + A LSR LV L+ D P+ PL+ L L L FL F L + Sbjct: 240 HRAMAELSRILVDLKRDCPLPDPLDALKLGAIPPEPLKLFLDEHGFRSLSAK-------- 291 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 LD+ T T + + T ++ TP Sbjct: 292 --------LDLGTAP-------------AGPPTLPRAGAAPVTPAADAPSTPTLP----- 325 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 S PI+ Y + + + +W+ + T ++D+ + + +++ST Sbjct: 326 ---SMPPIDRARYETVTTIEALDRWIADARAAHVVAVDTETASLDSVTGRLVGVSLSTGA 382 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNT---LTKEILSYLKKFFENEHFLKIGHNIKYD 472 K +I L H D + + L L F ++ LK+GHN+KYD Sbjct: 383 GK--------ACYIPLG-HGGTDMFAEKPEQIAMGDALERLGALFADDAVLKVGHNLKYD 433 Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 VL ++G+++ ++D +LMS+ LD+G+ H + +A+ L + + K++ + KS I Sbjct: 434 IGVLAQHGVTVAPYDDTLLMSFALDAGKHQHGLDELAKLHLDHVCLSFKDVCGTGKSQIS 493 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 ++ + E+A E++ V +LW LL+ +L +E VYE +D+P+ VV ME GI Sbjct: 494 FAEVQLDRATEYAAEDAEVAWRLWKLLKLRLPLEGGTRVYEMVDRPLAAVVEGMERAGIM 553 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 +D+D L ++S E + +L +E I+ L+G+ F + SP+QLG+ILF K+ G K K+G Sbjct: 554 VDRDYLAKLSGEFANEMLRIEGEIHALAGQPFAIGSPRQLGEILFDKMGLKGGRKGKSGD 613 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 W T +LE++ PI + ILEWRQL+K+KSTY D+L +N T RVHT YSL Sbjct: 614 WSTDQNELERLERDGVPIARKILEWRQLAKLKSTYTDALQEQVNATTGRVHTSYSLVGAQ 673 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIPI+T++G++IR AFI+ P LI+ADYSQIELR+ AH+A + L + Sbjct: 674 TGRLSSTDPNLQNIPIRTEVGRQIRDAFIAAPGHVLIAADYSQIELRLAAHMADVPELKE 733 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIH A E+FG +V+ R AKT+NFSI+YGIS + LA +L I EA Sbjct: 734 AFARGDDIHAATAIELFG----EVNRDTRGKAKTVNFSILYGISRWGLAGRLEITPDEAQ 789 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 I RYF RFPGI +YI T R GY ET+FGR+ + I + + R +ERAAIN Sbjct: 790 ALISRYFERFPGISDYISDTLETARARGYTETLFGRKTWFPRIKAANQNERAGSERAAIN 849 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 APIQG++AD+ +RAM + +L D LA KMLLQ+HDELVFE PE++ A ++I M Sbjct: 850 APIQGTSADLIKRAMARMPGALADAGLADVKMLLQVHDELVFEAPEDKAAAAGEVIRAVM 909 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 A P + L VPL+V I +W + Sbjct: 910 MGAAEPALKLSVPLEVEIGTGKSWGD 935 >gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03] gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07] gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22] gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26] gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32] gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12] Length = 933 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/984 (38%), Positives = 564/984 (57%), Gaps = 59/984 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + HL LVDGS FI+RAF+A P ++ +G+PVNA+ GF ML +LL K+ + +H Sbjct: 1 MTETPHLVLVDGSGFIFRAFHALPPMTSP-EGVPVNAVYGFTTMLARLL----KDHVGTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+FD TFR+EIYP YKA+RP+ PE L PQ L+R ATQAF +P IE+ G+EADD+ Sbjct: 56 LAVLFDASRQTFRSEIYPQYKAHRPEPPEDLRPQFSLIREATQAFNVPGIELPGWEADDL 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IA+Y +G TI+S+DKDLMQLV C+ D +K+ + V K+G+PP K+V Sbjct: 116 IASYATAIRAQGGTCTIVSSDKDLMQLVGDGVCMLDPIKQTPVGPTEVETKFGVPPTKVV 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +QAL GD DN+PG+PGIG KTAA L+QEYG LE +L A +K+ KRR+ ++E+A+ A Sbjct: 176 DVQALMGDPTDNVPGVPGIGPKTAAALVQEYGTLEAVLNAAPEMKKSKRRDMLIEHADAA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 R+S +LV L TDVP+ +P+E L + + L +L + F +++R+ Sbjct: 236 RVSLQLVTLATDVPLPVPVEELGTREPDMLVLADWLDRMGFRSILSRM------------ 283 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 G+ + + +S++ T+ + P L Sbjct: 284 ------------GLGHPSGAHAHRAARKVAAASVAGATTPADDASAPDASVL-------S 324 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 P ++ Y + + +Q+WV + G + TD +D + + +I+T K Sbjct: 325 APYHD--YETVRTAEALQKWVSAAQEAGICAVDTETDGLDPLAANIVGFSIATAPGK--- 379 Query: 421 SFKVETIFIDLSVH-TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 ++ L T + TG+ L L +++ LKI HN K+D L+L Sbjct: 380 -----ACYVPLKHEGTLEAPTGEQLAVDAALKLLAPLLQDDAVLKIFHNAKFDLLILDHA 434 Query: 480 GI---SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533 GI S+ +D ML+SY +G + ++ LS+T + + ++ +P ++ Sbjct: 435 GIPLSSITAVDDTMLISYSQSAGLHGQGMDELSAMHLSHTPISYDSVTGTGRNRLPFAQV 494 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 + ++A E+++V L+LW +L P L K L +YE++++P+ +++ ME GI +D+ Sbjct: 495 PVATATKYAAEDADVTLRLWHVLHPTLRTNKALVLYEQIERPLSAILADMEKAGIAVDRA 554 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L ++S + + +E +IY+ +G +FN+ SPKQLG+ILF ++ G + K G W T Sbjct: 555 ELDRLSKDFEARMQGMENDIYEAAGRQFNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTD 614 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + L+ + + + IL WRQL+K+KSTY D+L R RVHT + +A T TGRL Sbjct: 615 SSVLQDLADQGHDLPARILAWRQLAKLKSTYTDALLRQAG-RNDRVHTSFQMAITSTGRL 673 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIP++T+ G +IR+AFI+PP KKLISADYSQIELR+LA +A I L + F+ Sbjct: 674 SSTDPNLQNIPVRTEEGTRIRQAFIAPPGKKLISADYSQIELRLLADVANIPALREAFQL 733 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIH A+E+F + +E + RR AK INF IIYGIS F L QL IP EA YI Sbjct: 734 GQDIHARTASEVFNIPLEGMDALTRRRAKAINFGIIYGISAFGLGKQLGIPAGEARTYID 793 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF R+PGI +Y+E+ + R +GYV T FGRR + I+ ++ R ER AINAP+Q Sbjct: 794 AYFARYPGIRDYMERMREEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAPLQ 853 Query: 894 GSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 G AADI +RAM+ + +L+ T+MLLQ+HDEL+FE E E + II + ME A Sbjct: 854 GGAADIIKRAMVHLPLALQKAGFGETRMLLQVHDELLFETDESEAEAVAAIIKNVMEAAA 913 Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976 +L VPL V + NW E + Sbjct: 914 ----DLAVPLVVETGIGQNWAEAH 933 >gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H] gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H] Length = 944 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/978 (39%), Positives = 569/978 (58%), Gaps = 61/978 (6%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 HL L+DGS FI+RAF+A P +S G+PVNA+ GF NML +LL ++ + +H AVIF Sbjct: 17 HLVLIDGSGFIFRAFHALPPMSSPQ-GVPVNAVYGFTNMLARLL----RDHVGTHLAVIF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNEIYP YKA+RP+ PE L PQ L+R AT AF +P+IE+ G+EADD++A Y Sbjct: 72 DAGRTTFRNEIYPQYKAHRPEAPEDLRPQFGLIRDATAAFNVPSIELAGWEADDLLAAYA 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A + G TIIS+DKDLMQLV P L D +K++ I V K+G+ P+++V +QAL Sbjct: 132 KAAVEAGGCCTIISSDKDLMQLVRPGVELMDPMKQKPIREAEVEAKFGVRPDQVVDVQAL 191 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DN+PG+PGIG K AA L+ EYG LE IL A +K KRR+N++E+A+ AR+SR+ Sbjct: 192 MGDSTDNVPGVPGIGPKGAAQLVNEYGTLEQILAAAPAMKASKRRDNLIEHADAARMSRR 251 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LV+L + P+ P+ L + L +L+ + F I R+ AA P + Sbjct: 252 LVLLDDNAPMPQPISELGCREPVRETLRDWLEEMGFHSTIQRMGLGL---AAKPRPFMRQ 308 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 I E+K A D+ + + P Sbjct: 309 IVRPEDKAAA-------------------RDEVAAVTIPDAPYG---------------- 333 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD-TSFKV 424 Y + + + +W+ G + TD+++A + + +++S K F Sbjct: 334 -PYETVTDMDALDRWIADARAAGVMAVDTETDSLNARQANMVGLSLSVAPGKACYVPFLH 392 Query: 425 ETIFIDLSVHTSQDSTGKNTLTK----EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 ETI DL +DSTG+ + + E L LK ++ LK+ N KYD V G Sbjct: 393 ETIR-DL---LEEDSTGEAFVRQLDRTEALERLKPLLQDASVLKVFQNAKYDLTVFRGAG 448 Query: 481 I-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDS 536 I + +D ML+SY +G + +++ L +T + + + IP +++ Sbjct: 449 IPEITPIDDTMLISYAQSAGEHGQGMDELSELHLGHTPVTYDSVTGTGRKRIPFAQVAIE 508 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +A E+++V L+LW +LRP+L + L +YE +++P+I +++ ME GI++D L+ Sbjct: 509 AATAYAAEDADVTLRLWQVLRPQLRTRQALALYEEIERPLIQILTDMEDVGIKVDATELR 568 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 ++SA+ ++ + ++E+ I++ G FN+ SPKQLG+ILF ++ P G +TK+G W T + Sbjct: 569 RMSADFAERMGTIEQEIHEQVGRSFNVGSPKQLGEILFDEMGLPGGKRTKSGSWGTDSGV 628 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + + + + IL WRQL+K+KSTYAD+L +++ TQRVHT + +A T TGRL+S Sbjct: 629 LESLAEQGHELPQKILAWRQLAKLKSTYADALVQQMDQDTQRVHTSFQMAITTTGRLSSN 688 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 EPNLQNIPI+T+ G +IR+AF++ P L+SADYSQIELR+LAH+AKI PL + F D Sbjct: 689 EPNLQNIPIRTEEGARIRKAFVATPGCVLLSADYSQIELRLLAHVAKIEPLLEAFRLGQD 748 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+E+FG+ +E + P RR AK INF IIYGIS F LA QL+I EA YI YF Sbjct: 749 IHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGISAFGLAQQLQISPGEARSYIDAYF 808 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+PGI Y+E+TK +++GYV T FGRR + I + R ER AINAP+QG A Sbjct: 809 ARYPGIRAYMERTKEEAKKHGYVTTPFGRRCYVPGITEKNGARRAYAERQAINAPLQGGA 868 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI +RAM+ + + L L KM+LQ+HDEL+FEV E++ + + ME A Sbjct: 869 ADIIKRAMVHLARRLPATGLKAKMVLQVHDELLFEVEEQDAKALADFVRTEMEGAA---- 924 Query: 957 NLRVPLKVNIKVSNNWQE 974 L V L+V + +W + Sbjct: 925 KLDVALEVETGIGPSWAD 942 >gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] Length = 994 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/986 (39%), Positives = 570/986 (57%), Gaps = 69/986 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 NHL+LVDGS++I+RA++ P L+ G+PV A+ G+ MLWKL ++ +H AVI Sbjct: 56 NHLYLVDGSAYIFRAYHRLPPLTNPQ-GVPVGAVYGYTTMLWKLAEDLHAADGPTHLAVI 114 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D +VTFRNE+Y YKANRP PE L+PQ PL+R AT+AF + IE G EADD+IA+Y Sbjct: 115 LDKGSVTFRNELYDAYKANRPPPPEDLVPQFPLIRDATRAFSLACIEEAGLEADDLIASY 174 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS--PTTC---LYDTVKEEKIDIEHVIKKWGIPPEKM 179 T A +G+ VTI+S+DKDLMQLV P + DT+K +++ I V+ K+G+PPEK+ Sbjct: 175 TRAAAAQGWDVTIVSSDKDLMQLVGEYPGGGRVDMLDTMKNQRVFIPEVVDKFGVPPEKV 234 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GD++DN+PGI GIG KTA L+QE G+LE L NA +K K RE+++E A+ Sbjct: 235 GDVLALMGDAVDNVPGIRGIGPKTATKLIQENGDLETALANAPAMKAGKLRESLIEQADM 294 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 ARLSRKL+ L+ D + IPL+ L L +FL FT L+ ++ T Sbjct: 295 ARLSRKLIALKDDCALPIPLDDFTLGPIPPDPLAAFLGEHGFTSLLRKLGT--------- 345 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 R+T ++ + + E + Q L Sbjct: 346 ----------------------RETAAPAARTTGAPAPAAPTAPETGNR-------QPLP 376 Query: 360 QYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 ++P I+ +Y + + D+++W+ + + G + T +DA + + I+++T Sbjct: 377 EWPAIDTAAYPCVQDEADLEEWIARAQAAGLVAVDTETSALDAVGADLVGISLAT----- 431 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLT---KEILSYLKKFFENEHFLKIGHNIKYDKLV 475 +I L + D + L+ LK E++ LK+G NIKYD V Sbjct: 432 ---GPGAACYIPLGHGNTTDMFAERPRQIDKARALALLKPLLEDDSVLKVGQNIKYDLTV 488 Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRS-----SHDIASIAQKWLSYTR---KEILKSRKSS 527 L R+GI++ +D M+MS+ LD+GR H + +A++ L +T K++ + K + Sbjct: 489 LARHGIAVAPIDDTMVMSFCLDAGRGEPMPFGHGMDELAERHLGHTTIKFKDVAGTGKKA 548 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 I ++ +A E++ V +L +L P+L E +Y+R+D+P++ V++ ME G Sbjct: 549 ISFAEVPLPDATRYAAEDAEVTWRLHAVLAPRLAEEGGTRIYQRVDRPLVQVIATMEGHG 608 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I++D++ L +S E + + +LE I++ +G F + SPKQLG++LF KL + G K K+ Sbjct: 609 IKVDRERLATLSGEFATRIAALESVIHEKAGTTFTIGSPKQLGEVLFDKLGYKGGKKGKS 668 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQ+ T LE + + +LEWRQLSK+KSTY D+L IN T RVHT YSL Sbjct: 669 GQYSTDQSVLETLASQGAEVATLVLEWRQLSKLKSTYTDALQAAINPATGRVHTSYSLVG 728 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 TGRL+S +PNLQNIP++T++G++IR AF++ P L+SADYSQIELR+ AHIA + L Sbjct: 729 AQTGRLSSNDPNLQNIPVRTEIGRQIRDAFVAEPGHVLLSADYSQIELRLAAHIADVPAL 788 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F + DIH A E+FG +V+ R AKTINF+I+YGIS + LAT+L E Sbjct: 789 REAFAHGEDIHARTAMELFG----EVNRDTRGRAKTINFAILYGISRWGLATRLGTSADE 844 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A I RYF RFPGI YI +T VR GY ET+FGR+ + I S + R +ERAA Sbjct: 845 AQAMIDRYFERFPGIQRYIHETLEHVRDRGYSETLFGRKTWFPRIASKTQAERAGSERAA 904 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVH 946 INAPIQG+ ADI +RAM + +L + L +MLLQ+HDELVFE+PE ++ AS +I Sbjct: 905 INAPIQGTCADIIKRAMARMTPALVEAGLGHVRMLLQVHDELVFELPESDVAAASAVIER 964 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972 M A P + L VPL V I +W Sbjct: 965 VMATAAEPAVKLSVPLGVEIGTGPSW 990 >gi|240142593|ref|YP_002967106.1| DNA polymerase I [Methylobacterium extorquens AM1] gi|240012540|gb|ACS43765.1| DNA polymerase I [Methylobacterium extorquens AM1] Length = 957 Score = 691 bits (1784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/995 (37%), Positives = 554/995 (55%), Gaps = 77/995 (7%) Query: 5 NHLFLVDGSSFIYRAFYAT----PLL-SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 + L LVD SSF++RA++ + P +R DGLP A F L++ +++ + + Sbjct: 11 SRLILVDASSFVFRAYHQSLNQDPKYNARPSDGLPTGAARLFFAKLFQFVRDGAAGVVPT 70 Query: 60 HFAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 H ++FD + + R ++YP+YKANR + P L PQ+PLVR A +AFG+P IE+ EAD Sbjct: 71 HLGIVFDKGSRESHRRQLYPEYKANRSETPADLRPQMPLVREAVRAFGLPVIELDRTEAD 130 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHV 168 D+IATY AE +G V I+S DKDL QLVSP YD E +D+E V Sbjct: 131 DLIATYARAAEAKGAEVVIVSADKDLQQLVSPRIRFYDAESGSKGKPGYRPERNLDVEAV 190 Query: 169 IKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 + KW G+ P ++ AL GD+ DNIPG+PGIG KTAA LL EYG+LE +L AS IKQ Sbjct: 191 VAKWEGLQPGQIGDALALIGDTSDNIPGVPGIGLKTAAQLLLEYGSLEALLEGASAIKQP 250 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 KRREN+L AE ARLSR+LV L V + + + L L +G RL+++LKALE L R Sbjct: 251 KRRENLLAAAEGARLSRRLVELDCSVDLPVDPDTLALPAPDGRRLVAYLKALELPALAKR 310 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347 VA DA + P + E+ T + Sbjct: 311 VAKELGVDADRVPP---------------DAELAASPTTAPGADGPV------------- 342 Query: 348 QKLFLERLQKLSQYPINN-DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406 + +P + D+Y + D+ W+ G F + DA Sbjct: 343 ----------MPPFPAADPDAYGLVATQDDLDGWIAAARAAGR--FGLHLHRGDA---GA 387 Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEH 461 I + I+ + +++ + D +I + E+ Sbjct: 388 IGLGIAVEPGR--------AVYVPIEHRAGGDGLFGGLAPGQIDAAAAWGAVGALMEDAG 439 Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE-- 519 KI H++K R G + G +D+ LMSY L+SG + H + +A + L + Sbjct: 440 VRKIVHDLKGTAKAAGRLGFEIAGADDVGLMSYALESGLTGHGLPELAARHLGNAAPDPD 499 Query: 520 -ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 + + + + ++ A + ++ +L+LW +L P+L VYE L+ PM+ Sbjct: 500 ALRGQGRGRVDAEAVAPRAAAPVAAQIADAVLRLWTVLAPRLEGTPTQAVYEELELPMVP 559 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V+++ME G++ID+ +L ++S + L LE I++L G F + SPKQ+GD+LF +L Sbjct: 560 VLARMEAAGVRIDRAVLTELSRDFGATLARLETEIHELGGGPFQIGSPKQIGDVLFGRLG 619 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P G +T +GQW T A LE++ + + +L+WR+ SK+KSTYAD+L + ++ T R Sbjct: 620 LPGGRRTPSGQWATGATILEELAAAGHALPGRLLDWRRTSKLKSTYADALLSAADRGTDR 679 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT +SLA+T TGRL+S +P L NIPI+T+ G++IR AF++ +++SADYSQ+ELR+L Sbjct: 680 VHTTFSLAATTTGRLSSSDPGLHNIPIRTEEGRRIRAAFVAAEGHRILSADYSQVELRLL 739 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AHIA + + + F +DIH A+++FGV + V ++RR AKTINF I+YGIS F LA Sbjct: 740 AHIADVPRMREAFAEGVDIHAATASDMFGVPVGAVPGELRRRAKTINFGIVYGISAFGLA 799 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 +L I R EAA++I RYF RFPGI +Y+E TK F R++G+V T+FGR HY I S S Sbjct: 800 DRLGIGRQEAAEFIARYFERFPGIRDYVEGTKTFCREHGFVRTLFGRVCHYPGITSGNVS 859 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 R ER A+NAPIQG+AADI RRAMI + +L D L+ +MLLQ+HDELVFEV E E Sbjct: 860 ERMGVERQAVNAPIQGTAADIIRRAMIRMEGALADSGLSARMLLQVHDELVFEVAEAECA 919 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 ++++ M A P I+L VPL V + + NW+ Sbjct: 920 DTARVVSDVMAGAAAPDIDLAVPLVVEARSAENWE 954 >gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] Length = 924 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/990 (40%), Positives = 571/990 (57%), Gaps = 80/990 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + HL+LVDGS +I+RA+++ P ++R DG PVNA+ GF ML KLL + A H Sbjct: 1 MTEPKHLYLVDGSGYIFRAYHSLPPMTRT-DGTPVNAVYGFTAMLMKLLADMD----ADH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AVIFD V+FRNEIYP YKA RP PE L+PQ PL+R A +AF +P IE GFEADD+ Sbjct: 56 LAVIFDKARVSFRNEIYPLYKAQRPPPPEDLIPQFPLIREAVRAFNVPCIERDGFEADDL 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IATY A EG VT++S+DKDLMQLV L+D +K I V +K+G+ P+K++ Sbjct: 116 IATYAKRARAEGAIVTVVSSDKDLMQLVGEGVALFDPMKNRAIGPAEVFEKFGVAPDKVI 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +QAL GD++DN+PG+PGIG KTAA L+ EYG+LE +L A+ IKQ KRR+++L++AE A Sbjct: 176 DVQALAGDAVDNVPGVPGIGVKTAAQLIGEYGDLETLLARAAEIKQPKRRQSLLDHAEAA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 R+S +LV LR DV ++ L + + L FL F L+ RV A Sbjct: 236 RISLQLVRLRDDVEVSETLADFATAEPDAEVLAGFLAENGFRSLLARVTAVAHAKAGT-- 293 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 TPQ + Sbjct: 294 ---------------------------------------------TPQP---------AA 299 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-TLDQKDD 419 P ++D Y + ++ W+ K G + TD++ A + + ++++ T + Sbjct: 300 APADDD-YVLVNTLAELGVWIAKARAAGLVAIDTETDSLKARRATLVGVSLAITPGRACY 358 Query: 420 TSF-----KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F K E + D + + K + L+ + LK+GHN+K+D Sbjct: 359 IPFAHGLRKAEGLDFDGAAPPVANIEDKAAALALLGDLLR----DPGVLKVGHNLKFDLH 414 Query: 475 VLHRYGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPI 530 VL G+S + +D M++SYVLD H + +A L + T +E+ K I Sbjct: 415 VLANAGLSDVAPVDDTMVLSYVLDGTLHGHGMDELAGLHLGRRTITFEEVCGKGKGQITF 474 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 D++ + +A E+++V L+L+LLLR +L+ E ++ V+E LD+PM+ +++ ME G+++ Sbjct: 475 DQVPLDKAVAYAAEDADVTLRLYLLLRDRLLKEHMVRVHETLDRPMVRILTDMEAAGVRV 534 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQ 649 D LK +S + +K + LE+ I+ L+G FN++SPKQLG++LF ++ G K+ KTG Sbjct: 535 DALRLKALSGDFAKRMGDLEDQIHALAGHAFNVASPKQLGEVLFEEMSLTGGKKSRKTGA 594 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 W T AQ L+Q+ + + +L+WRQ +K+K TY D+L I++RT RVHT Y L T Sbjct: 595 WSTDAQVLDQLAAEGHDLPARVLDWRQYAKLKGTYTDALVAEIDERTGRVHTTYGLTVTA 654 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIP++++ G+KIR AFI+ P LISADYSQIELR++AH+A IT L Q Sbjct: 655 TGRLSSNDPNLQNIPVRSEAGRKIREAFIAAPGHLLISADYSQIELRLVAHVAGITALRQ 714 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIH + A+++FGV +E + P +RR AK INF IIYGIS LA QL + R EAA Sbjct: 715 AFAEGKDIHAITASQVFGVPVEGMDPMVRRQAKAINFGIIYGISAHGLAQQLGVGRPEAA 774 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 +I YF RFP I Y+E K R G+V T FGRRI I + R ER AIN Sbjct: 775 AFITAYFARFPEIRSYMETVKEEARTVGWVATPFGRRIPIPGIQDKNPAARAFAERQAIN 834 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 APIQG AADI +RAMI++ +LE LAT+MLLQ+HDEL+FE PE E TA+ ++ ME Sbjct: 835 APIQGGAADIIKRAMIALPPALEQAGLATRMLLQVHDELIFEAPEAEAETAAALVKRVME 894 Query: 950 KACL---PKINLRVPLKVNIKVSNNWQEEN 976 A + VPL+V+ ++ +W E + Sbjct: 895 TAVTLTDDQGERTVPLEVDTGIAASWAEAH 924 >gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] Length = 928 Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/983 (38%), Positives = 567/983 (57%), Gaps = 75/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +NHL+LVDGS +I+RA++ P L+ KH G PV A+ G+ MLWKL K +H AV Sbjct: 3 QNHLYLVDGSGYIFRAYHQLPPLTNKH-GQPVGAVYGYTTMLWKLADELGKAEGPTHLAV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 + D + TFRNE+Y YKANRP PE L+PQ P++R AT+AF +P IE GFEADDIIA+ Sbjct: 62 VLDKGSHTFRNEMYDAYKANRPPPPEDLVPQFPMIRDATRAFSLPCIEEAGFEADDIIAS 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 YT A +G+ VTI+S+DKDLMQL+ P +YDT+K E+ ++V+ K+G+ PE++ + Sbjct: 122 YTKAAIAQGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMNKFGVQPEQLGDVL 181 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GDS+DN+PGIPGIG KTAA L+ EYG LE L A +K+ K +EN++ +A+ ARLS Sbjct: 182 ALMGDSVDNVPGIPGIGPKTAAKLITEYGGLEAALEAAPSMKKSKMQENLIAHADMARLS 241 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 R+LV L + + PL+ L L+ L FL+ F L+ R Sbjct: 242 RRLVALHDAMDLPEPLDDLTLKGIPLEPLQQFLEHHGFKSLLARAGA------------- 288 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 + S + + ++ E+ P I Sbjct: 289 --------------PAAAVAIATAAAAVSEATPPAAPVHEEEPP---------------I 319 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 + Y +V + + +W+ G + TD +D + ++++ Sbjct: 320 DRSLYETVVTEEALDRWIAAAHAEGLVAVDTETDMLDCVSCALVGVSLA----------- 368 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKE--------ILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + + + GK+ ++ +L+ LK E++ LKIG N+KYD V Sbjct: 369 ---VGPNAACYVPVGHGGKDMFAEKPDQLPLALVLAKLKPLLEDDSVLKIGQNLKYDITV 425 Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRS--SHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 L R+GI + ++D ++MS+ LD+G+S H + A+ L++ + K++ + KS I Sbjct: 426 LRRHGIEIAPYDDTIVMSFDLDAGQSLAGHGMDEAAKTHLNHICISFKDVCGTGKSQISF 485 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ + E+A E+++V L+LW L + ++ E VYE +D+P++ V+++ME GI++ Sbjct: 486 AEVPLDKATEYAAEDADVTLRLWKLFKTRIANEGATRVYELVDRPLVSVIAKMEHEGIKV 545 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D++ L ++SAE + + +LE I+ L+G+ F + S +QLG ILF K+ + G K K+G + Sbjct: 546 DREALSRLSAEFTAGIAALETEIHGLAGQPFAIGSTQQLGAILFDKMGYKGGKKGKSGAY 605 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T LEQ+ I +L+WRQLSK+KSTY D+L IN+ T RVHT YSL+ T Sbjct: 606 STDVTILEQLKVQGAEIAGKVLDWRQLSKLKSTYTDALQAQINRDTSRVHTSYSLSGAQT 665 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIPI+T++G++IR AF++ P +++ADYSQIELR+ AH+A + L + Sbjct: 666 GRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEA 725 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F N DIH A ++FG +V+ R AKTINF+I+YGIS + LA +L I EA D Sbjct: 726 FANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEAQD 781 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 I RY+ RFPGI YI T R GY ET+FGR+ + I + R ERAAINA Sbjct: 782 MISRYYERFPGISLYITDTIEKARSKGYTETLFGRKTWFPRIKASVQHERQGAERAAINA 841 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 PIQG++ADI +RAM + +L L KMLLQ+HDELVFE+PE ++ AS +I ME Sbjct: 842 PIQGTSADIIKRAMARMGPALAAEGLHDVKMLLQVHDELVFELPEGDVEQASAVIRRVME 901 Query: 950 KACLPKINLRVPLKVNIKVSNNW 972 A P + L VPL V I +W Sbjct: 902 GAAEPIVKLSVPLGVEIGHGPSW 924 >gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001] gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001] Length = 965 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/984 (38%), Positives = 562/984 (57%), Gaps = 58/984 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + HL LVDGS FI+RAF+A P ++ +G+PVNA+ GF ML +LL K+ + +H Sbjct: 32 MTETPHLVLVDGSGFIFRAFHALPPMTSP-EGVPVNAVYGFTTMLARLL----KDHVGTH 86 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+FD TFR+EIYP YKA+RP+ PE L PQ L+R ATQAF +P IE+ G+EADD+ Sbjct: 87 LAVLFDASRQTFRSEIYPQYKAHRPEPPEDLRPQFSLIREATQAFNVPGIELPGWEADDL 146 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IA+Y +G TI+S+DKDLMQLV C+ D +K+ + V K+G+PP K+V Sbjct: 147 IASYATAIRAQGGTCTIVSSDKDLMQLVGDGVCMLDPIKQTPVGPAEVETKFGVPPTKVV 206 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +QAL GD DN+PG+PGIG KTAA L+QEYG LE +L A +K+ KRR+ ++E+AE A Sbjct: 207 DVQALMGDPTDNVPGVPGIGPKTAAALVQEYGTLEAVLNAAPEMKKSKRRDMLIEHAEAA 266 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 R+S +LV L TDVP+ +P++ L + + L +L + F +++R+ + A+ Sbjct: 267 RVSLQLVTLATDVPLPVPVDELNTREPDMLMLADWLDRMGFRSILSRMGLGHPS-GAHAH 325 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + G A D T S S+ Sbjct: 326 RAAKKVAAASVAG-ATTPAADTAPTTDASVLSA--------------------------- 357 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 P ++ Y + + +Q+W+ + G + TD +D + + +I+T K Sbjct: 358 -PYHD--YETVRTAEALQKWISTAQEAGICAVDTETDGLDPLAANIVGFSIATAPGK--- 411 Query: 421 SFKVETIFIDLSVH-TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 ++ L T + TG+ L L +++ LKI HN K+D L+L Sbjct: 412 -----ACYVPLKHEGTLEAPTGEQLAVDAALKLLAPLLQDDAVLKIFHNAKFDLLILDHA 466 Query: 480 GI---SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKI 533 GI S+ +D ML+SY +G + ++ L++T + + ++ +P ++ Sbjct: 467 GIPLSSITAVDDTMLISYSQSAGLHGQGMDELSNLHLNHTPITYDSVTGTGRNRVPFAQV 526 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 ++A E+++V L+LW +L P L K L +YE++++P+ +++ ME GI +D+ Sbjct: 527 PVETATKYAAEDADVTLRLWYVLHPTLRTNKALALYEQIERPLSVILADMEKAGIAVDRT 586 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L ++S + + +E +IY+ +G +FN+ SPKQLG+ILF ++ G + K G W T Sbjct: 587 ELDRLSKDFEARMQGMENDIYEAAGRQFNIGSPKQLGEILFDEMGLKGGKRGKAGAWSTD 646 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + L+ + + + IL WRQL+K+KSTY D+L R RVHT + +A T TGRL Sbjct: 647 SSVLQDLADQGHDLPARILAWRQLAKLKSTYTDALLRQAG-RDDRVHTSFQMAITSTGRL 705 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIP++T+ G +IR+AFI+P KKLISADYSQIELR+LA +A I L + F+ Sbjct: 706 SSTDPNLQNIPVRTEEGTRIRQAFIAPSGKKLISADYSQIELRLLADVANIPALREAFQL 765 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIH A+E+F + +E + RR AK INF IIYGIS F L QL IP EA YI Sbjct: 766 GQDIHARTASEVFNIPLEGMDALTRRRAKAINFGIIYGISAFGLGKQLGIPAGEARTYID 825 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF R+PGI +Y+E+ + R +GYV T FGRR + I+ ++ R ER AINAP+Q Sbjct: 826 AYFARYPGIRDYMERMREEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAPLQ 885 Query: 894 GSAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 G AADI +RAM+ + +L+ AT+MLLQ+HDEL+FE E + ++II + ME A Sbjct: 886 GGAADIIKRAMVHLPLALQKAGFGATRMLLQVHDELLFETDESDAEAVAEIIKNVMEAAA 945 Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976 +L VPL V + NW E + Sbjct: 946 ----DLAVPLVVETGIGQNWAEAH 965 >gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] Length = 945 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/991 (39%), Positives = 568/991 (57%), Gaps = 69/991 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M ++ HL+LVDGS++I+RA++ P L+ G+PV A+ G+ MLWKL ++ K +H Sbjct: 1 MDEKQHLYLVDGSAYIFRAYHRLPPLTNPR-GVPVGAVYGYTTMLWKLAEDLHKADGPTH 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AVI D +FRN++Y YKANRP PE L+PQ PL+R AT+AF + IE EADD+ Sbjct: 60 LAVILDKAGTSFRNDLYDQYKANRPPPPEDLVPQFPLIRDATRAFSLACIEEDALEADDL 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTT----C--LYDTVKEEKIDIEHVIKKWGI 174 IA+Y A G+ VTI+S+DKDLMQLV C + DT+K ++IDI V++K+G+ Sbjct: 120 IASYARAATLRGWDVTIVSSDKDLMQLVGKCATGGGCIDMLDTMKNQRIDIPEVVEKFGV 179 Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 PPEK+ + AL GDS+DN+PGI GIG KTA L+QE+G+LE+ L A +K K RE+++ Sbjct: 180 PPEKVGDVLALMGDSVDNVPGIRGIGPKTATKLIQEHGDLESALAAAPTMKAGKLRESLI 239 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 E AE ARLSR LV L+ D P+ +P+E L L +FL+ FT L+ R+ D Sbjct: 240 EQAEMARLSRVLVALKEDCPLPVPIEDFKLGQIPRDPLAAFLEEHGFTSLLRRLD---DG 296 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 + L+ +NK E +R Sbjct: 297 KGSPGPKTQLNPAKPDNKAAPAAPEGNR-------------------------------- 324 Query: 355 LQKLSQYPINN-DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 Q L +P + +Y + + ++QQW+ + + T +DA + + ++++ Sbjct: 325 -QALPSWPAPDLSAYACVQSMGELQQWIARAFEARVVAIDTETSALDAMRADLVGVSLA- 382 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT---KEILSYLKKFFENEHFLKIGHNIK 470 L D +I L H D + L E L+ LK E++ LK+G NIK Sbjct: 383 LGPND-------ACYIPLG-HGGSDMFAEKPLQVDRAEALAALKPLLESDAVLKVGQNIK 434 Query: 471 YDKLVLHRYGISMRGFEDIMLMSYVLDSGRS-----SHDIASIAQKWLSYTR---KEILK 522 YD +L R GI + +D M+MS+ LD+GRS H + ++++ L +T KE+ Sbjct: 435 YDLNILARQGIMVSPIDDTMVMSFCLDAGRSETGLAGHGMDELSERHLLHTTMKFKELCG 494 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + K +I ++ + +A E+++V +L L +P+L E +Y+++D+P+I VV+ Sbjct: 495 TGKKAISFAEVPLADATRYAAEDADVTWRLHRLFQPRLAGEGGTRIYQKVDRPLIPVVAM 554 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI++D++ L +S E + + LE I++ G F + SPKQLG++LF KL + G Sbjct: 555 MERNGIKVDRERLSGLSTEFAAQIARLEGVIHEKCGMSFTIGSPKQLGEVLFDKLGYKGG 614 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 K KTGQ+ T LE + + +LEWRQLSK+KSTY D+L IN T RVHT Sbjct: 615 KKGKTGQYSTDQSVLEGLAAQGAEVATLVLEWRQLSKLKSTYTDALQAAINPHTGRVHTS 674 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 YSL TGRL+S EPNLQNIPI+T++G++IR AF++ P L++ADYSQIELR+ AH+A Sbjct: 675 YSLVGAQTGRLSSNEPNLQNIPIRTEIGRQIRDAFVAEPGNVLLAADYSQIELRLAAHMA 734 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L + F DIH A E+FG V R AKTINF+I+YGIS + L +L Sbjct: 735 DVPALKEAFAAGEDIHARTAMEMFGT----VDRDTRGRAKTINFAILYGISRWGLGGRLG 790 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + EA I RYF RFPGI YI +T VR+ GY ET+FGR+ + I+S + R Sbjct: 791 VSADEAQAMIDRYFERFPGIQRYIHETLESVRERGYSETLFGRKTWFPRISSKNQAERQG 850 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTAS 941 +ERAAINAPIQG++ADI +RAM + +L + L +MLLQ+HDELVFE+P+ ++ A Sbjct: 851 SERAAINAPIQGTSADIIKRAMARMMPALTEAGLGHVRMLLQVHDELVFELPQGDVEAAK 910 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I M A P + L VPL V I +W Sbjct: 911 PVIERVMATAAEPAVKLSVPLGVEIGTGLSW 941 >gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17] gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17] Length = 921 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/979 (39%), Positives = 566/979 (57%), Gaps = 76/979 (7%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 HL+LVDGS +I+RA++ P L+ KH G PV A+ G+ MLWKL+ +H AV+ Sbjct: 3 HLYLVDGSGYIFRAYHRLPPLTNKH-GEPVGAVYGYTTMLWKLVDEINAADGPTHMAVVL 61 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D + TFRNE+Y YKA+RP P L+PQ P++R AT+AF +P IE +G EADD+IA Y Sbjct: 62 DKSSKTFRNEMYDQYKAHRPPPPPDLVPQFPMIRDATRAFSLPCIEEEGLEADDLIACYA 121 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTC-LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A EG+ VTI+S DKDLMQLV + + DT+ ++ +V +K+G+ P+++ + A Sbjct: 122 RAAMAEGWQVTIVSGDKDLMQLVEDGSLDMLDTMNNRRLGEAYVQEKFGVGPKQLGDVLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS+DN+PG+PG+G KTA+ L+ E+G+LE++L A +K+ K R+N++E+A+ ARLS+ Sbjct: 182 LMGDSVDNVPGVPGVGPKTASKLIVEHGDLESVLAAAPEMKKGKLRDNLIEHADNARLSK 241 Query: 245 KLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKALEFTKLINRVAT-TYDCDAANIEP 301 +LV L + P+ PLE L L + P L +FL+ F LI ++ T D A P Sbjct: 242 RLVTLECNAPLPQPLEELALHASIPDAP-LRAFLEHHGFRSLIAKMGQITEDAPA----P 296 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 V D T+ + + D Sbjct: 297 VAGD----------------------TAPAAPMDDDE----------------------- 311 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 P N D YT + + + + +WV G + T + DA ++ + +++ K Sbjct: 312 PCNLDGYTTVQDLETLDRWVADARHQGFIAIDTETSSTDATQAELVGVSLCLSPNK---- 367 Query: 422 FKVETIFIDLSVHTSQDSTGKNTL---TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 +I L H D + + E L +K E+ LKIG N+K+D +VL Sbjct: 368 ----ACYIPLG-HGGTDLLSEVPVQIPVAEALERIKALCEDPSVLKIGQNLKFDMIVLGE 422 Query: 479 YGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535 GIS+ +D ++MS+ LD+G H + +A LS+T KE++ + K + ++ Sbjct: 423 RGISIAPHDDTIVMSFDLDAGLHGHGMDELAATHLSHTCLAFKEVVGTGKKQLGFHEVDL 482 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 +A E+++V L+LW + +L +E+ VYE +D+P++ V++ ME GI++D++ L Sbjct: 483 KTATRYAAEDADVTLRLWKRFKARLPMEQATRVYEMVDRPLVPVIANMERRGIKVDRERL 542 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 Q+S E + + LE I+ L+G F + SPKQLG+ILF +L G K K+G + T Sbjct: 543 SQLSTEFAGQIAGLEGEIHTLAGTPFTIGSPKQLGEILFDRLGLKGGRKGKSGVYSTDVT 602 Query: 656 DLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 +LE++ G I++ ILEWRQLSK+KSTY D+L IN +T RVHT YSL TGRL+ Sbjct: 603 ELERLARDGGEEIVRKILEWRQLSKLKSTYTDALQAQINPKTGRVHTSYSLTGAQTGRLS 662 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S EPNLQNIPI+T++G+++R AFI+ LI+ADYSQIELR+ AH+A + L F N Sbjct: 663 STEPNLQNIPIRTEVGRQLREAFIAEDGHVLIAADYSQIELRLAAHMADVPALRDAFANG 722 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH + A E+FG +V+ R AKTINF+I+YGIS + LA +L + EA I R Sbjct: 723 DDIHSLTAKELFG----EVNRDTRGRAKTINFAILYGISRWGLAGRLDVSADEAQAMIDR 778 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF RFPGI+ YI +T + VR+ G+ ET+FGR+ H+ I S R ERAAINAPIQG Sbjct: 779 YFERFPGINRYIAETLSSVREKGFTETLFGRKTHFPRIASRNQGERQGAERAAINAPIQG 838 Query: 895 SAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 ++ADI +RAM+ + +L L +MLLQ+HDELVFE PE + A +I M A Sbjct: 839 TSADIIKRAMVRMEPALAAAGLGHVRMLLQVHDELVFEAPEADAEAAGAVIREVMAGAAE 898 Query: 954 PKINLRVPLKVNIKVSNNW 972 P + L VPL V I V NW Sbjct: 899 PAVKLSVPLGVEIGVGKNW 917 >gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21] gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21] Length = 944 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/991 (39%), Positives = 580/991 (58%), Gaps = 70/991 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + HL+LVDGS++I+RA++ P L+ +G PV A+ G+ MLWKL + K +H Sbjct: 1 MADKQHLYLVDGSAYIFRAYHRLPPLT-DPEGTPVGAVYGYTTMLWKLADDLDKADGPTH 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+ D + +FRNEIY YKANRP PE L+PQ PL+R AT+AF +P +E EADD+ Sbjct: 60 LAVVLDKSSHSFRNEIYGQYKANRPDPPEDLVPQFPLIRDATRAFSLPLVEEPDVEADDM 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----LYDTVKEEKIDIEHVIKKWGIPP 176 IA+Y A+ G+ VTI+S+DKDLMQLV + DT+K +I I+ V +K+G+PP Sbjct: 120 IASYARAAQDAGWNVTIVSSDKDLMQLVGEKDGARIDMLDTMKSARIYIDEVQEKFGVPP 179 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 EK+ + AL GDS+DNIPGI G+G KTA+ L+ E+G+L L A +K+ K +E ++E+ Sbjct: 180 EKVGDVLALMGDSVDNIPGIFGVGPKTASKLIAEHGDLSAALDAAEGMKKSKLKERLIEH 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E A LSR LV L+ D P+ I + + L+ L +FL+ FT L+ R+ DA Sbjct: 240 REDAELSRVLVTLKEDCPLPIAINDMKLDGVPSEPLAAFLEKHGFTSLLRRL------DA 293 Query: 297 ANIEP-VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 P D+N + + +Q + S Q + + Sbjct: 294 GTGSPNRATDLNPPKQQ----------------TQGAEASAQGN---------------V 322 Query: 356 QKLSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 Q L P ++ Y + + +++W+ + + + T ++D + ++++T Sbjct: 323 QPLPDLPEVDRAKYECVQSMDRLEEWIARARSARLVAVDTETTSLDCMLCDLVGVSLATG 382 Query: 415 DQKDDTSFKVETIFIDLSVHTSQD---STGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471 + +I L H D + E L+ LK E++ LK+ N KY Sbjct: 383 PN--------QACYIPLG-HGGSDMFAEKPQQIGKAEALAALKPLLEDDAVLKVFQNGKY 433 Query: 472 DKLVLHRYGISMRGFEDIMLMSYVLDSGRS------SHDIASIAQKWLSY---TRKEILK 522 D VL R GI++ +D M++S+ LD+GRS H + +A++ L + + KE+ Sbjct: 434 DLNVLAREGIAVAPIDDTMIISFALDAGRSESGIGGGHGMDELAERHLGHPCISFKELCG 493 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + + +IP ++ + E+A E+++V +L +L+ +L VE +YER+D+P++ VV+ Sbjct: 494 TGRKAIPFAEVPLDKATEYAAEDADVTWRLHAMLKRRLPVEGGTKIYERVDRPLVPVVAG 553 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI++D+ L ++S E + LE I++++G++F + SPKQLG+ILF KL F G Sbjct: 554 MERHGIKVDRARLAKLSEEFATETKRLEGEIHEIAGQEFTVGSPKQLGEILFDKLGFKGG 613 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 K K+GQ+ T LE+++ I +LEWRQL+K+KSTY D+L IN R+ RVHT Sbjct: 614 KKGKSGQYSTDQSVLEKLSGDGAEIAAKVLEWRQLAKLKSTYTDALQEAINPRSGRVHTS 673 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 YSL TGRL+S +PNLQNIPI+T++G++IR AF++ L++ADYSQIELR+ AH+A Sbjct: 674 YSLVGAQTGRLSSTDPNLQNIPIRTEIGRQIRDAFVAEEGNVLLAADYSQIELRLAAHMA 733 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + PL + F DIH A E+FG +V+ R AKTINF+I+YGIS + LA +L Sbjct: 734 DVAPLKEAFAEGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGISRWGLAGRLG 789 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + EA I YF RFPGI +YI T +VR+ GY ET+FGR+ + INS + R Sbjct: 790 VEADEAQAMIDTYFKRFPGIQKYILHTLEYVREKGYSETLFGRKTWFPRINSKNQAERQG 849 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTAS 941 +ERAAINAPIQG++ADI +RAM+ ++ +LE+ L +MLLQ+HDELVFE+PE ++ AS Sbjct: 850 SERAAINAPIQGTSADIIKRAMVRMNSALEEAGLGHVRMLLQVHDELVFELPEADVAAAS 909 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 II M A P + L VPL V I +W Sbjct: 910 AIIERVMAGAAQPYVELSVPLGVEIGTGKSW 940 >gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354] Length = 955 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1003 (38%), Positives = 573/1003 (57%), Gaps = 79/1003 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + HL+LVDGS++I+RA++ P L+ +G PV A+ G+ MLWKL ++ K +H Sbjct: 1 MADKQHLYLVDGSAYIFRAYHRLPPLTNP-EGTPVGAVYGYTTMLWKLAEDLDKAEGPTH 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+ D + +FRNEIY YKANRP PE L+PQ PL+R AT+AF +P IE G EADD+ Sbjct: 60 LAVVLDKSSQSFRNEIYDQYKANRPDPPEDLVPQFPLIRDATRAFSLPMIEEPGVEADDM 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS-----PTTCLYDTVKEEKIDIEHVIKKWGIP 175 IA+Y A +G+ VTI+S+DKDLMQLV T + DT+K +I V +K+G+ Sbjct: 120 IASYARAAAAQGWDVTIVSSDKDLMQLVGTSEQGGTIDMLDTMKSARIGPAEVEEKFGVA 179 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PE + + AL GDS+DNIPGI G+G KTA L+Q++G+L L A +K+ K +E +LE Sbjct: 180 PELVGDVLALMGDSVDNIPGIFGVGPKTATKLIQDHGSLTAALDAAPEMKKSKLKERLLE 239 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 + A LSR LV L+ D + I ++ + L L +FL F L+ R+ Sbjct: 240 HRADAELSRILVTLKEDCELPIAIDDMKLGKIPPEPLAAFLTQHGFGSLLRRLEGG---- 295 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 N G +T++ + PQ Sbjct: 296 ---------------NGGPGPKTQLH-------------PAKPQNPGEAHAPQG----NS 323 Query: 356 QKLSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 Q LS+ P I+ +Y + + + + +W++K + T +DA + + ++++ Sbjct: 324 QPLSEMPAIDRSTYECVQSVEQLDEWIEKAFAARLVAVDTETSALDAMQADLVGVSLAIG 383 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTL--------TKEILSYLKKFFENEHFLKIG 466 + +I L H ++ G + T+ L+ LK E++ +K+G Sbjct: 384 PN--------QACYIPLG-HFNEGGGGDDMFAEKPQQIETEVALAKLKPLLESDAVVKVG 434 Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS------SHDIASIAQKWLSYTR--- 517 NIKYD VL R+GI++ ED M++S+ LD+GRS H + +AQ+ L +T Sbjct: 435 QNIKYDLNVLARHGIAVAPIEDTMIVSFALDAGRSQDGIGGGHGMDELAQRHLGHTCLTF 494 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 KEI + K +IP ++ + E+A E+++V +L+ L+P+L VE +YER+D+P+I Sbjct: 495 KEICGTGKKAIPFGEVPIDRATEYAAEDADVTSRLYTHLKPRLAVEGGTRIYERVDRPLI 554 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 VV+ ME GI++D+ L +S ++ LE I++++G++F + SPKQLGDILF K+ Sbjct: 555 PVVAGMERHGIKVDRQQLAALSERFARETARLEGEIHEIAGQEFTVGSPKQLGDILFDKM 614 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 + G K K+GQ+ T LE+++ PI +LEWRQL+K+KSTY D+L IN +T Sbjct: 615 GYKGGKKGKSGQYSTDQSVLEKLDATGAPIATKVLEWRQLAKLKSTYTDALQQAINPKTN 674 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 RVHT YSL TGRL+S +PNLQNIPI+T++G++IR+AF++ L++ADYSQIELR+ Sbjct: 675 RVHTSYSLVGAQTGRLSSTDPNLQNIPIRTEIGREIRQAFVADEGNVLLAADYSQIELRL 734 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 AH+A + PL + F DIH A E+FG V R AKTINF+I+YGIS + L Sbjct: 735 AAHMADVAPLREAFAAGEDIHARTAQEMFG----SVDRDTRARAKTINFAILYGISRWGL 790 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 A +L I EA D I YF RFPGI YI T VR+ GY +T+FGR+ + INS Sbjct: 791 AGRLGIEADEAQDLIDIYFARFPGIQRYIVNTMETVRECGYSQTLFGRKTWFPRINSKNQ 850 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL------ATKMLLQIHDELVFE 931 + R +ERAA+NAPIQG++ADI +RAM + +L + L +MLLQ+HDELVFE Sbjct: 851 AERQGSERAAVNAPIQGTSADIIKRAMARMGPALAEAGLKPDAPDGVRMLLQVHDELVFE 910 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +PE + A +I M A P + L VPL V I NW + Sbjct: 911 MPEGLVEQAKPVIRSVMADAAGPAVELSVPLGVEIGTGKNWDD 953 >gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1] gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1] Length = 946 Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/989 (39%), Positives = 571/989 (57%), Gaps = 69/989 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 ++ HL+LVDGSS+I+RA++ P L+ +G PV A+ G+ MLWKL + +H A Sbjct: 4 EQQHLYLVDGSSYIFRAYHRLPPLT-DPEGTPVGAVYGYTTMLWKLADDLDAAEGPTHLA 62 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VI D + +FRN+IYP+YKANRP+ PE L PQ PL+R AT+AF +P IE G EADD+IA Sbjct: 63 VILDKDSKSFRNDIYPEYKANRPEPPEDLRPQFPLIRDATRAFSLPCIEESGLEADDLIA 122 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----LYDTVKEEKIDIEHVIKKWGIPPEK 178 +Y A++EG+ VTI+S+DKDLMQLV + DT+K +I IE V +K+G+PPEK Sbjct: 123 SYARAAQREGWNVTIVSSDKDLMQLVGEENGAKIDMLDTMKSARIYIEEVEEKFGVPPEK 182 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + + AL GDS+DNIPGI G+G KTA+ L+ E+G+L L A +K+ K +E +++ E Sbjct: 183 VGDVLALMGDSVDNIPGIYGVGPKTASKLISEHGSLTAALDQAPDMKKSKLKERLIDGRE 242 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A +SR LV L+ D + + ++ + LE L +FL+ FT L+ R+ A Sbjct: 243 DAEMSRVLVTLKEDCDLPMAIDEMKLEGIPSEPLAAFLEKHGFTSLLKRLG------AGA 296 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 P DR + ++ DQ + Q L Sbjct: 297 GSP-------------------DRPNDLNPAKVDKAGDQGDAEGNRQ-----------PL 326 Query: 359 SQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + P + S + V T D +Q W+ + + T ++DA + + ++++ Sbjct: 327 PEMPKVDRSAYETVQTLDRLQAWIDRASAARLVAVDTETSSLDAMEADLVGVSLALAPN- 385 Query: 418 DDTSFKVETIFIDLSVHTSQD---STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 + +I L+ H D + ++ L+ LK E++ LK+ N KYD Sbjct: 386 -------DACYIPLA-HGGTDMFSDKPEQVAMEDALAALKLLLEDDSVLKVFQNGKYDLN 437 Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--------KEILKSRKS 526 VL R GI + ED M+MS+ LD+GR LS K++ + K Sbjct: 438 VLARVGIDVSPIEDTMVMSFDLDAGRGEGMGGGHGMDELSERHLLHKPLAFKDVCGTGKK 497 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 +IP ++ + E+A E+++V L+L+ +L+P+L E +YER+D+P+I VV+ ME Sbjct: 498 AIPFGEVPLDRATEYAAEDADVTLRLYRMLKPRLSEEGGTKIYERVDRPLIPVVAGMERE 557 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 GI++D+ L ++S E + SLE+ I++++G++F + SPKQLG+ILF K+ F G K K Sbjct: 558 GIKVDRARLAKLSEEFATTTASLEKEIHEIAGQQFAVGSPKQLGEILFDKMGFKGGKKGK 617 Query: 647 TGQWKTTAQDLEQI--NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 +G + T LE + + PI +LEWR LSK+KSTY D+L IN T RVHT YS Sbjct: 618 SGAYSTDQSVLENLAKDEAAKPIADKVLEWRHLSKLKSTYTDALQAQINPETGRVHTSYS 677 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 L TGRL+S +PNLQNIPI+T++G+ IR AF+ L++ADYSQIELR+ AH+A + Sbjct: 678 LVGAQTGRLSSTDPNLQNIPIRTEIGRTIREAFVPEDGNVLLAADYSQIELRLAAHMADV 737 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + F N DIH A E+FG +V+ R AKTINF+I+YGIS + LA +L + Sbjct: 738 DTLKEAFANGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGISRWGLAGRLEVE 793 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 EA D I YF RFPGI YI +T VR+ GY ET+FGR+ + I S + R +E Sbjct: 794 PDEAQDMIDTYFQRFPGIQRYIMETLETVRERGYSETLFGRKTWFPRITSKNQAERQGSE 853 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQI 943 RAAINAPIQG++ADI +RAM + +L D L +MLLQ+HDELVFE+P+ ++ AS I Sbjct: 854 RAAINAPIQGTSADIIKRAMARMLPALRDEGLGNVRMLLQVHDELVFELPDGDVEKASPI 913 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972 I M +A LP ++L VPL V+I +W Sbjct: 914 IERVMAEAALPAVSLDVPLAVDIGTGQSW 942 >gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3] Length = 732 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/733 (44%), Positives = 469/733 (63%), Gaps = 24/733 (3%) Query: 263 ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDR 322 +LE NGP+LI FLK +EFT L RVA DCDA+ IEP V+ I E A ++D Sbjct: 1 MLEPQNGPKLIGFLKTMEFTTLTRRVAEVCDCDASAIEPAVVRI---EWGDAAHGPDLDA 57 Query: 323 -DTTIKTSQFSSLSDQT--------SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVN 373 + +S Q+ + + +P L R + + P ++ +Y I + Sbjct: 58 AEPAPVAGGIPEVSGQSVPVPPRAKAGVEGAFSPADLAKARAEAFAALPFDHSAYVTIRD 117 Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ-KDDTSFKVETIFIDLS 432 + +W+ G +F T ++DA ++ + I+++ D D + K+ ++ LS Sbjct: 118 LATLDRWIADARDTGLVAFDTETTSLDAMQAELVGISMAIADNVADPSGTKIRAAYVPLS 177 Query: 433 -----VHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 +N + ++ L LK E+E LK+ N+KYD L+L RYGI + F Sbjct: 178 HKNGVGDLLGGGLAENQVPMRDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETKSF 237 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAI 543 +D ML+SYVLD+G +H + +++K+L +T K++ S ++++ D + + +A Sbjct: 238 DDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGRANVTFDLVDIDRATHYAA 297 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 E+++V L+LWL+L+P+L L VYERL++P++ V+++ME GI +D+ +L ++S E++ Sbjct: 298 EDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELA 357 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + LE+ IY L+GE+FN+ SPKQLGDILF K+ G+KTKTGQW T+A LE + Sbjct: 358 QGAARLEDEIYTLAGERFNIGSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAA 417 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 + + I++WRQL+K+KSTY D+LP +++ T+RVHT YSLAST TGRL+S EPNLQNI Sbjct: 418 GFELPRKIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNI 477 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 P++T G+KIR AFIS P KLISADYSQIELR+LAH+A+I L + FE+ +DIH M A+ Sbjct: 478 PVRTAEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTAS 537 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 E+FGV +E + ++RR AK INF IIYGIS F LA QL I RSEA DYIK+YF RFPGI Sbjct: 538 EMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIR 597 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 +Y+E K R GYVETIFGRRI+Y EI S S+R NERAAINAPIQGSAAD+ RRA Sbjct: 598 DYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRA 657 Query: 904 MISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 MI + +L + LA +MLLQ+HDEL+FEV +E++ A IIV ME A +P + +RVP Sbjct: 658 MIKIEPALAEAGLAERVRMLLQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVP 717 Query: 962 LKVNIKVSNNWQE 974 LKV+ + + NW E Sbjct: 718 LKVDARAATNWDE 730 >gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591] gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591] Length = 928 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/986 (38%), Positives = 564/986 (57%), Gaps = 80/986 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LLQ SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGV-GEPTGAMYGVLNMLRSLLQQYHP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFR++++ YK++RP +P+ L Q+ PL R+ +A G+P + + G EADD+I Sbjct: 61 VFDAKGKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRM-VKAMGLPLLSVSGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T AE+ G V I + DKD+ QLV+P L +T+ + + V K+GIPP ++ Sbjct: 120 TLAQQAERVGKPVLISTGDKDMAQLVTPHITLINTMNNTILGPDEVCAKYGIPPSLIIDF 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEY 236 AL GDS DNIPG+PGIG KTA LLQ G L+ + N +I K + ++ Sbjct: 180 LALMGDSSDNIPGVPGIGEKTAQALLQGVGGLDALYGNLDKIATLTFRGAKTMAAKLEQH 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + A LS +L ++TDV + E L + + N L EF + + Sbjct: 240 KDVAYLSYQLATIKTDVELEQGCEQLTVNEPNVAELSELFTRYEFKRWL----------- 288 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 T+++ +++ + + K ++ TP+ + + Sbjct: 289 ---------------------TDLEDGKWLQSGKKGPAAVPFVKAEADDTPKDV----VG 323 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 L Q D Y I++ + WV ++ T G SF TD +D + + I+++ + Sbjct: 324 VLPQ-----DGYVTILDEPTLHDWVARINTAGLFSFDTETDGLDTLTANLVGISLA-IKP 377 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + + ++D + +D ++L+ LK E+E KIG N+K+DK V+ Sbjct: 378 GEAAYLPLGHDYLDAPMQLDRD---------KVLAVLKPLLEDESVAKIGQNLKFDKGVM 428 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 RYGI +RG D ML SYVLDS HD+ S++ ++L + T +EI K+ + ++ Sbjct: 429 ARYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLSDRYLQHKTITFEEIAGKGKNQLTFNQ 488 Query: 533 ISDSQVQEHAIENSNVILQL----WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 I Q +A E+++V L+L W L P+ +L V++ +D P++ V+S+ME TG+ Sbjct: 489 IPLEQAAVYAAEDADVTLRLHETLWAKLEPQ---PELCKVFQNIDMPLVPVLSRMERTGV 545 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ID +L + S E+++ L LE ++L+GE FNLSSPKQLG IL+ KL+ P KT G Sbjct: 546 LIDTTILGEHSQELTQRLAELEVQAHELAGEAFNLSSPKQLGTILYEKLQLPVIKKTPKG 605 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D+P+ K ILE R+L+K+KSTY D LP IN T+RVHT Y A T Sbjct: 606 APSTNEEVLAELAL-DHPLPKLILEHRELAKLKSTYTDKLPQMINPLTKRVHTSYHQAVT 664 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P +++ADYSQIELRI+AH+++ L Sbjct: 665 ATGRLSSSDPNLQNIPVRNEQGRRIRQAFIAPEGYHILAADYSQIELRIMAHLSRDAGLL 724 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F N LDIHR AAE+FG+ +++V+ + RR AK INF +IYG+S F L+ QL IPR+EA Sbjct: 725 RAFSNGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYGMSAFGLSRQLAIPRNEA 784 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ GYV T+ GRR++ +I+S + R ERAAI Sbjct: 785 QKYMNLYFERYPGVQEYMERTRQQAADQGYVSTLDGRRLYLPDIHSRNAMSRKAAERAAI 844 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI ++AMI++ L+ K ML+Q+HDELVFEV + AS I + M Sbjct: 845 NAPMQGTAADIIKKAMIAIDGWLQQEKPLVTMLMQVHDELVFEVHHSVLDEASAKIRNLM 904 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E C+ L VPL+V+I +NW + Sbjct: 905 E-GCM---QLDVPLQVDIGTGSNWDQ 926 >gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] Length = 903 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 370/982 (37%), Positives = 548/982 (55%), Gaps = 89/982 (9%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M K L LVDGSS++YRAF+A P L+ G P A+ G NML KLL++ E H Sbjct: 1 MSKTPPLVLVDGSSYLYRAFHALPPLTNSR-GEPTGAVYGVANMLRKLLKDYAPE----H 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD TFR+E+Y +YKANRP +P+ L Q+ + QA G+P + + G EADD+ Sbjct: 56 VVVVFDAKGKTFRDEMYAEYKANRPPMPDELAAQVEPLHQVVQAMGLPMLVVPGVEADDV 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IAT + G V I + DKD+ QLV P L +T+ + K+D E V +K+G+ PE++V Sbjct: 116 IATLAREGREHGLEVVISTGDKDMAQLVEPGVTLVNTMTDTKMDAEGVKEKFGVAPEQIV 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 AL GD++DN+PG+ +G KTA L+ YG+L+ I+ +A IK K EN+ Sbjct: 176 DYLALIGDTVDNVPGVDKVGPKTAVKWLEAYGSLDGIMEHAEEIKGKVG-ENLRAALGHL 234 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LSR+LV +R D+ + + E L L + + L + LEF + Sbjct: 235 PLSRELVTVRRDLELDVTPESLRLGEPDRETLRALFSRLEFRTWLK-------------- 280 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + S +Q + + TP + Sbjct: 281 -----------------------------ELESGEEQAQAASDDPTPGQ----------- 300 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 +Y I++ K + W+++LET +F T ++D ++ + + Sbjct: 301 ---PAQAYETILDEKALAAWMKRLETAELFAFDTETTSLDYMQAQVVGV----------- 346 Query: 421 SFKV---ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 SF V E ++ L+ H D+ + E L LK E+ K+GH++KYD+ VL Sbjct: 347 SFAVKTGEAAYLPLA-HDYADAP-QQLDRDETLKRLKPLLESARHKKLGHHLKYDRNVLL 404 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 +GI + G E D ML SYVL+S S HD+ S+AQK+L Y +E+ IP ++ Sbjct: 405 NHGIELNGIEHDTMLESYVLNSTASRHDMDSLAQKYLDYRTTHYEEVAGKGAKQIPFSQV 464 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 +A E++++ L+L L P+L E VY ++ P++ V+S+ME TG+++D Sbjct: 465 RIEDATPYAAEDADITLRLHEHLWPQLSAAEGQCRVYREIEMPLVPVLSRMERTGVKVDA 524 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 + L S E+++ + +E ++++G FNL SPKQ+ +IL+ + K P KT GQ T Sbjct: 525 ERLFAQSHELAERMGQIEREAHEVAGGAFNLGSPKQIQEILYERQKLPVLRKTPKGQPST 584 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 LEQ+ D P+ K ILE R LSK+KSTY D LP I+ T RVHT Y A TGR Sbjct: 585 AEDVLEQLAL-DYPLPKLILEHRSLSKLKSTYTDKLPERIDPDTGRVHTSYHQAVASTGR 643 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+T+ G++IR+AF++P ++L++ADYSQIELRI+AH++ L + F Sbjct: 644 LSSSDPNLQNIPIRTEEGRRIRQAFVAPSGRRLVAADYSQIELRIMAHLSGDAGLLRAFA 703 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FGV +++VS + RR AK INF +IYG+S F LA QL I R +A DY+ Sbjct: 704 EGQDIHRATAAEVFGVGLDQVSGEQRRAAKAINFGLIYGMSAFGLARQLGIERGDAQDYV 763 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 RYF R+PG+ +Y+E T+ R GYVET+FGRR++ +IN+ IR ER AINAP+ Sbjct: 764 DRYFARYPGVKDYMESTREKARDLGYVETLFGRRLYLPDINARNGQIRAQAERVAINAPM 823 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI V + + + ++ M+LQ+HDELV EV E+ + + + M +A Sbjct: 824 QGTAADIIKRAMIQVDQWIRESRIPAVMILQVHDELVLEVDEDAVDKVREELCVRMSQAA 883 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L+VPL V V +NW + Sbjct: 884 ----ELKVPLVVEAGVGDNWDD 901 >gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586] gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586] Length = 929 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/986 (37%), Positives = 559/986 (56%), Gaps = 79/986 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LLQ SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGA-GEPTGAMYGVLNMLRSLLQQYHP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFR++++ YK++RP +P+ L Q+ PL R+ +A G+P + + G EADD+I Sbjct: 61 VFDAKGKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRM-VKAMGLPLLSVSGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T AE+ G V I + DKD+ QLV+P L +T+ + + V K+GIPP ++ Sbjct: 120 TLAQQAERAGKPVLISTGDKDMAQLVTPQITLINTMNNTILGPDEVCAKYGIPPSLIIDF 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEY 236 AL GDS DNIPG+PG+G KTA LLQ G L+ + N +I K + ++ Sbjct: 180 LALMGDSSDNIPGVPGVGEKTAQALLQGVGGLDALYDNLDKIATLTFRGAKTMAAKLEQH 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + A LS +L ++TDV + + E L + + + L EF + + V Sbjct: 240 KDVAYLSYQLATIKTDVELELGCEQLTVNELDVTELRELFARYEFKRWLADVEDGKWLQG 299 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 P + E++ E P+ E Sbjct: 300 GKKGPAAVPFVKPESE-------------------------------EDAPK----EASS 324 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 LSQ D Y I++ +Q W+ ++ G SF TD +D + + I+++ + Sbjct: 325 VLSQ-----DGYVTILDESSLQDWIARINAAGLFSFDTETDGLDTLTANLVGISLA-IKP 378 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + + ++D +D+ +L+ LK ENE KIG N+K+DK V+ Sbjct: 379 GEAAYLPLGHDYLDAPTQLDRDT---------VLAQLKPLLENEAIGKIGQNLKFDKGVM 429 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 RYGI +RG D ML SYVLDS HD+ S+++++L + T +EI K+ + ++ Sbjct: 430 ARYGIDLRGIVFDTMLESYVLDSVAGRHDMDSLSERYLQHKTITFEEIAGKGKNQLTFNQ 489 Query: 533 ISDSQVQEHAIENSNVILQL----WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 I Q +A E+++V L+L W L P+ ++L V++ +D P++ V+S+ME TG+ Sbjct: 490 IPLEQAAVYAAEDADVTLRLHETLWAKLEPQ---QELCQVFKNIDMPLVPVLSRMERTGV 546 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ID +L + S E+++ L LE ++L+GE FNL+SPKQLG IL+ KL+ P KT G Sbjct: 547 LIDTTILAEHSQELTQRLAELEVRAHELAGEAFNLASPKQLGAILYEKLQLPVIKKTPKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D+P+ K ILE R+L+K+KSTY D LP IN T+RVHT Y A T Sbjct: 607 APSTNEEVLAELAL-DHPLPKLILEHRELAKLKSTYTDKLPQMINPLTKRVHTSYHQAVT 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++++ADYSQIELRI+AH+++ L Sbjct: 666 ATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPQGYQILAADYSQIELRIMAHLSRDAGLL 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F + LDIHR AAE+FG+ ++KV+ + RR AK INF +IYG+S F L+ QL I R+EA Sbjct: 726 KAFSDGLDIHRATAAEVFGLPLDKVTTEQRRSAKAINFGLIYGMSAFGLSRQLGIARNEA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ GYV T+ GRR++ +I+S + R ERAAI Sbjct: 786 QKYMNLYFERYPGVQEYMERTRQQAADQGYVSTLDGRRLYLPDIHSRNAMSRKAAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI ++AMI++ L+ K ML+Q+HDELVFEV + S I + M Sbjct: 846 NAPMQGTAADIIKKAMIAIDDWLQQEKPLATMLMQVHDELVFEVHHSVLDEVSAKIRNLM 905 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E C+ L VPL+V+I +NW + Sbjct: 906 E-GCM---QLDVPLQVDIGTGSNWDQ 927 >gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380] gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380] Length = 932 Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust. Identities = 379/987 (38%), Positives = 573/987 (58%), Gaps = 78/987 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+EI+ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDEIFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G AV I + DKD+ QLV+P L +T+ + + V +K+G+PPE ++ Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + N +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFNNLDKIATLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + + L + + +L EF + + A Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDEQLHQLFSRYEFKRWL-----------A 289 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++E G +E + +R T +++ ++ + E Sbjct: 290 DVE-----------AGKWLEGKKERPTAQANNKYIVATEPAAAA-----------EVTAV 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 LSQ D+Y I++ + + W+++L+ +F TD +D S I + Sbjct: 328 LSQ-----DNYQTILDEQTLADWIERLKKAEVFAFDTETDGLDTLSSNLIGL-------- 374 Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF V E ++ L+ H D+ + L ++ +L LK E+E LK+G N+K+D+ Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPAQ--LDRQWVLDTLKPLLEDEKALKVGQNLKFDQ 428 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L RYGI +RG D ML SYVLDS HD+ S+A+++L++ T +EI K+ + Sbjct: 429 SMLARYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I+ Q +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E TG+ Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQDIEMPLLPILSRIERTGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 IDQ++L S E++ L LE+ ++L+GE FNL+SPKQL IL+ K + P KT G Sbjct: 549 LIDQNILAAHSKELAIRLDELEKQAHELAGEPFNLASPKQLQVILYEKQQLPILKKTPGG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K I+E+R L+K+KSTY D LP IN + RVHT Y A T Sbjct: 609 AASTNEEVLAELAL-DYPLPKVIIEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++++ADYSQIELRI+AH+++ L Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLL 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 728 AAFAAGKDIHRATAAEVFGLPLEGVTTEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ GYV T+ GRR++ +INS ++ R ER AI Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDINSRNANRRKAAEREAI 847 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI +RAMI+V L+ ++++Q+HDELVFEV E + +A Q I Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQESAPLVRVIMQVHDELVFEVHETVLESAEQKIREL 907 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME++ + L VPLKV++ V +NW++ Sbjct: 908 MEQS----MQLAVPLKVDVGVGDNWEQ 930 >gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] Length = 917 Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust. Identities = 369/975 (37%), Positives = 547/975 (56%), Gaps = 74/975 (7%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 HL L+DG ++++RAF+A G P NA+ G+ ML +L KE +H AV F Sbjct: 3 HLVLIDGPNYVFRAFHAVRHNLTNSKGEPTNAVFGYVQMLRSIL----KELGPTHVAVAF 58 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRN +Y DYKA+RP +PE L Q P + T AF + I ++ +EADD+IAT Sbjct: 59 DPKGGTFRNRMYADYKAHRPPMPEDLAAQWPSIFDVTDAFRLNRICVEDYEADDVIATLA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 AE G+ V+I+STDKDLMQLV + DT+K + E V ++WG+ P+++ L AL Sbjct: 119 RQAEARGWDVSIVSTDKDLMQLVGERIWMLDTMKRKDYGPEEVKERWGVGPDRIQDLLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+PGIG KTA LL+ YG+LE +L A IKQ+KRREN++E+A+ ARLS + Sbjct: 179 AGDSADNIPGVPGIGPKTAVTLLEAYGDLEGVLTRAGEIKQQKRRENLIEFADDARLSYR 238 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LV L VP+ I L+ L + + + RL LEF +++ + AA PVV Sbjct: 239 LVALDEQVPLPIELDDLAVTEPDRERLAELFTRLEFRRML----AEFSGPAAIDTPVVPQ 294 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK-INSEQTPQKLFLERLQKLSQYPIN 364 E ++TS ++++ + + +N E T Q L E Sbjct: 295 AKPAE--------------PVRTSTPATVTPRIDRLVNDETTLQSLLAE----------- 329 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 + E I + T ++ A ++ + ++ +T Sbjct: 330 ----------------LSSAELI---ALDTETTSLQAHDAELVGLSFATR--------AG 362 Query: 425 ETIFIDLSVHTSQD---STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 E +I + H S D + + +L+ LK E+ K GHN+KYD VL R GI Sbjct: 363 EAWYIPVG-HRSTDLLVPAPQQLPLQHVLAALKPLLEDAAKRKCGHNLKYDAQVLRRAGI 421 Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQ 537 + G D ML++Y L + + S+A+ +L+Y E+ + D++ S Sbjct: 422 ELAGIAADSMLLAYCLYPAKYPPSLDSVAEDYLNYHCTPYSEVAGKGAKQVCFDEVPVSI 481 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ L+L LL +L+ E L ++ ++ P+ V++ +E TG +D ++L Sbjct: 482 ATPYACEDADIALRLTGLLSAQLLTEGRLTRHDEIELPLSQVLADIEWTGAHVDAEMLAG 541 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 +S + LE I+ +GEKFN+ SPKQLG +LF L P G KTK+GQW T + L Sbjct: 542 LSTGFGLRIAELESQIHAAAGEKFNIQSPKQLGVLLFETLAIPGGKKTKSGQWATGQEVL 601 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E++ ++ + + IL+ RQL+K+KSTY D+LP I++ T RVHT ++ A T TGRL+S + Sbjct: 602 EKL-ADEHEVPRLILQVRQLAKLKSTYTDALPKLIHRTTGRVHTSFNQAITTTGRLSSSD 660 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI++ G++IR+AFI+ L++ADYSQIELR++AH + L F N DI Sbjct: 661 PNLQNIPIRSAEGREIRKAFIAEEGHTLLAADYSQIELRLMAHFSGDAALCAAFANGEDI 720 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H AA + G+ +E VS +MRR AK INF I+YG+S F LA QL I R EA +I YF Sbjct: 721 HAATAAAVNGIALEDVSGEMRRRAKAINFGILYGMSAFGLAKQLNISRGEAQTFIDTYFE 780 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+P + +++ T R+ GYVET+ G R++ EI+S R ER AINAP+QGSAA Sbjct: 781 RYPSVRGFMDDTLVLAREQGYVETLLGHRVYVPEISSSNGMRRAYAERTAINAPLQGSAA 840 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AMI +H+ L A ++LQ+HDEL+ E P ++I S I+ +ME+A + Sbjct: 841 DIIKVAMIHLHRRLRQEAPAAAIILQVHDELIVEAPVDQIDAVSAIMRQTMEQA----VT 896 Query: 958 LRVPLKVNIKVSNNW 972 L VPL V+I ++W Sbjct: 897 LEVPLTVDIGSGHSW 911 >gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937] gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937] Length = 944 Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust. Identities = 374/994 (37%), Positives = 569/994 (57%), Gaps = 80/994 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LLQ SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGA-GEPTGAMYGVLNMLRSLLQQYHP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFR++++ YK++RP +P+ L Q+ PL R+ +A G+P + + G EADD+I Sbjct: 61 VFDAKGKTFRDDLFEHYKSHRPPMPDDLRAQIEPLHRM-VKAMGLPLLSVSGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T AE+ G V I + DKD+ QLV+P L +T+ + + V K+GIPP ++ Sbjct: 120 TLAQQAERAGKPVLISTGDKDMAQLVTPNITLINTMNNTILGPDEVCAKYGIPPSLIIDF 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GDS DNIPG+PG+G KTA LLQ G L+ + + +I K + + Sbjct: 180 LALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYADLDKIASLTFRGAKTMAAKLEQN 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E A LS +L ++TDV + + E L + + + L EF + + Sbjct: 240 KELAYLSYQLATIKTDVELELGCEQLTVNEPDVAELHELFTRYEFKRWL----------- 288 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 +++ ++ + S + K E TP+ E Sbjct: 289 ---------------------ADVEDGKWLQGGRKSQPAVPFVKATVEATPK----EAAS 323 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 LSQ D Y I++ K + W+++++T SF TD +D + + ++++ + Sbjct: 324 VLSQ-----DGYVTILDEKVLLDWLERIKTAALFSFDTETDGLDTLTANLVGVSLAI--K 376 Query: 417 KDDTSF----KVETIFIDLSVHTSQDSTGKNTLTK----EILSYLKKFFENEHFLKIGHN 468 + ++ + + ++++S S T+ +L+ LK E++ KIG N Sbjct: 377 PGEAAYLPLGHITSRVYSSNIYSSTVSPATRMSTQLDRDRVLALLKPLLEDDGIRKIGQN 436 Query: 469 IKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSR 524 +K+DK V+ RYGI +RG D ML SYVLDS HD+ S+++++L + T +EI Sbjct: 437 LKFDKGVMARYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLSERYLQHKTITFEEIAGKG 496 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQL----WLLLRPKLIVEKLLHVYERLDKPMIDVV 580 K+ + D+I +Q +A E+++V L+L W L P+ ++L V++ +D P++ V+ Sbjct: 497 KNQLTFDQIPLAQASVYAAEDADVTLRLHETLWAKLEPQ---QELRKVFQNIDMPLVPVL 553 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 S++E TG+ ID +L + S E+++ L LE ++L+GE FNLSSPKQLG IL+ KL+ P Sbjct: 554 SRIERTGVLIDTTILAEHSRELTQRLAELEVQAHELAGEAFNLSSPKQLGAILYEKLQLP 613 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 KT G T + L ++ D P+ K ILE R L+K+KSTY D LP IN T+RVH Sbjct: 614 VIKKTPKGAPSTNEEVLAELAL-DYPLPKLILEHRGLAKLKSTYTDKLPQMINPLTRRVH 672 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T Y A T TGRL+S +PNLQNIP++ + G++IR+AFI+P ++++ADYSQIELRI+AH Sbjct: 673 TSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYRILAADYSQIELRIMAH 732 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ L + F + LDIHR AAE+FG+ +++V+ + RR AK INF +IYG+S F L+ Q Sbjct: 733 LSRDAGLLRAFSHGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYGMSAFGLSRQ 792 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L IPRSEA Y+ YF R+PG+ EY+E+T+ GYV T+ GRR++ +I+S + R Sbjct: 793 LAIPRSEAQKYMNLYFERYPGVQEYMERTRQQAVDQGYVSTLDGRRLYLPDIHSRNVNSR 852 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ERAAINAP+QG+AADI ++AMI++ L K ML+Q+HDELVFEV + A Sbjct: 853 KAAERAAINAPMQGTAADIIKKAMIAIDAWLRQEKPLVTMLMQVHDELVFEVHHSVLDEA 912 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 S I + ME C+ L VPL+V+I +NW + Sbjct: 913 SAKIRNLME-GCM---QLDVPLQVDIGTGSNWDQ 942 >gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11] Length = 932 Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust. Identities = 377/987 (38%), Positives = 569/987 (57%), Gaps = 78/987 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G AV I + DKD+ QLV+P L +T+ + V +K+G+PPE ++ Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPLEVCEKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+++ N +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + I + L + + +L EF + + V D Sbjct: 241 DVAYLSYKLATIKTDVELDITCDELNVSAPDDEQLHQLFSRYEFKRWLADVEAGKWLDGK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 P NK A + + +++ T+ ++ E Sbjct: 301 KDRPTA----QASNKAFA------------APESAPVAEVTAVLSQE------------- 331 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +Y I++ K + W+++L+ +F TD +D S I + Sbjct: 332 ---------NYQTILDEKSLSDWIERLKKAEVFAFDTETDGLDTLSSNLIGL-------- 374 Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF V E ++ L+ H D+ + L ++ +L+ LK E++ LK+G N+K+D+ Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPAQ--LDRDWVLAQLKPLLEDDKALKVGQNLKFDQ 428 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L RYGI +RG D ML SYVLDS HD+ S+A+++L++ T +EI K+ + Sbjct: 429 SMLARYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I+ Q +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E TG+ Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 IDQ++L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN + RVHT Y A T Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++++ADYSQIELRI+AH+++ L Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLL 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG+++EKV+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 728 AAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ + GYV T+ GRR++ +I+S ++ R ER AI Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAI 847 Query: 889 NAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI +RAMI+V L+ + ++++Q+HDELVFEV E + +A Q I Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHDELVFEVHESVLESAEQKIREL 907 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME++ + L VPLKV++ V NW + Sbjct: 908 MEQS----MQLAVPLKVDVGVGYNWDQ 930 >gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40] gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40] Length = 926 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 376/984 (38%), Positives = 555/984 (56%), Gaps = 83/984 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G P A+ G NML KL K+ S AVIFD Sbjct: 8 LLLVDGSSYLYRAFHAMPPLTTS-SGQPTGAVRGVVNMLRKL----AKDYPESPIAVIFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++IY DYKANRP +P+ L Q+ + +A G+P I G EADD+I TY Sbjct: 63 AKGKTFRDDIYSDYKANRPPMPDDLRAQIEPLHTIIRAMGLPLIIQDGVEADDVIGTYAQ 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G V + + DKD+ QLVS L +T+ E +DI V +K+GIPP ++ AL Sbjct: 123 QATEKGIPVVVSTGDKDMAQLVSEHVTLVNTMTETVMDIAGVNEKFGIPPSLIIDFLALM 182 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAETA 240 GD +DNIPG+PG+G KTA LLQ G++E+I N ++ K + + + + A Sbjct: 183 GDKVDNIPGVPGVGEKTALALLQNLGSVEDIYANLDKVPTLEVRGAKSLAKKLEDNRDKA 242 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +L ++ DV + LE LI D + L++ LEF + Sbjct: 243 FLSYELATIKLDVELEHSLEELIPVDPDNDALLALFTELEFKGWV--------------- 287 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 TE+ + K + S N++Q ++ ++ + Sbjct: 288 -----------------TELSKGGGTKAKKASP--------NAKQAAEEAPAAAPEEAVE 322 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 IN D+Y I+ ++ WV +L +F T +++ +K + + Sbjct: 323 --INRDNYETILTEASLEAWVDRLSKAELFAFDTETTSLNYMEAKVVGV----------- 369 Query: 421 SFKV---ETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLV 475 SF V E ++ D G L++E +L LK E+E+ K+G N+KYD V Sbjct: 370 SFAVAPGEAAYVPFG----HDYLGAPEQLSEEQVLGKLKPLLEDENVKKVGQNLKYDASV 425 Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 L +GI+++G D ML SYV++S + HD+ ++A L +T +EI + + Sbjct: 426 LANHGIALQGIAFDTMLESYVVNSTANRHDMDTLALAHLGHTNISFEEIAGKGAKQLTFN 485 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 +I Q +A E++++ L+L L P++ VE + ++E ++ P++ V+S++E TG I Sbjct: 486 QIQLDQAAPYAAEDADITLRLHQALWPQVEAVEGIKSLFENVELPLVPVLSKVERTGALI 545 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D +L Q SAE++ +L ++ ++L+GE+FNL+SPKQLG ILF KL P KTKTG Sbjct: 546 DATILGQQSAELAADLERIQREAWELAGEEFNLASPKQLGVILFEKLGIPVIKKTKTGAP 605 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ +LE R L+K+KSTY D LP IN T RVHT Y+ A T T Sbjct: 606 STAEEVLQELAL-DYPLPALLLEQRGLAKLKSTYTDKLPTMINPHTGRVHTSYNQAVTAT 664 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIPIKT+ G+++R+AFI+P ++++ADYSQIELRI+AH++ L Sbjct: 665 GRLSSTDPNLQNIPIKTEAGRRVRKAFIAPEGYRIVAADYSQIELRIMAHLSGDEGLTNA 724 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F LD+H AAE+FG ++E V+P+ RR AK INF +IYG+S F LA QL I R++A Sbjct: 725 FNQGLDVHSATAAEVFGTSVESVTPEQRRSAKAINFGLIYGMSAFGLARQLHIGRNDAQR 784 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI YF R+PG+ Y+E + F +++GYVET+ GRR++ EIN+ R ER AINA Sbjct: 785 YIDTYFDRYPGVARYMEDIRVFAKEHGYVETLMGRRLYLPEINASNGMRRQAAERTAINA 844 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QGSAADI ++AMI V K L K+ KM++Q+HDELV EV E++I + + M Sbjct: 845 PMQGSAADIIKKAMIDVDKWLSTLKVDAKMIMQVHDELVLEVAEDQIEPVTATLCDIMSA 904 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A + L VPL V V NW E Sbjct: 905 A----LKLDVPLLVEAGVGMNWDE 924 >gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 932 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 377/987 (38%), Positives = 570/987 (57%), Gaps = 78/987 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G AV I + DKD+ QLV+P L +T+ + + V +K+G+PPE ++ Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+++ N +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + I + L + + +L EF + + V D Sbjct: 241 DVAYLSYKLATIKTDVELDITCDELNVSAPDDEQLHQLFSRYEFKRWLADVEAGKWLDGK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 P NK A + + +++ T+ ++ E Sbjct: 301 KDRPTA----QASNKAFA------------APESAPVAEVTAVLSQE------------- 331 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +Y I++ K + W+++L+ +F TD +D S I + Sbjct: 332 ---------NYQTILDEKSLSDWIERLKKAEVFAFDTETDGLDTLSSNLIGL-------- 374 Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF V E ++ L+ H D+ + L ++ +L+ LK E++ LK+G N+K+D+ Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPAQ--LDRDWVLAQLKPLLEDDKALKVGQNLKFDQ 428 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L RYGI +RG D ML SYVLDS HD+ S+A+++L++ T +EI K+ + Sbjct: 429 SMLARYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I+ Q +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E TG+ Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEIPLLPILSRIERTGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 IDQ++L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G Sbjct: 549 LIDQNILVAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN + RVHT Y A T Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++++ADYSQIELRI+AH+++ L Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLL 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG+++EKV+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 728 AAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ + GYV T+ GRR++ +I+S ++ R ER AI Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAI 847 Query: 889 NAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI +RAMI+V L+ + ++++Q+HDELVFEV E + +A Q I Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHDELVFEVHESVLESAEQKIREL 907 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME++ + L VPLKV++ V NW + Sbjct: 908 MEQS----MQLAVPLKVDVGVGYNWDQ 930 >gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236] gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236] Length = 932 Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust. Identities = 381/987 (38%), Positives = 568/987 (57%), Gaps = 78/987 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNS-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G AV I + DKD+ QLV+P L +T+ + + V K+G+PPE ++ Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCDKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSHLDKISTLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++TDV + I + L + + +L+ EF + + V D Sbjct: 241 DVAYLSYQLATIKTDVELDITCDQLTVSSPDNEQLLQLFSRYEFKRWLVDVEAGKWLDGK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 P T NK S + +E P +E Sbjct: 301 KERPT----GQTSNK--------------------------SFVAAESAPA---VEVTAV 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 LSQ ++Y I++ K + +W+++L+ +F TD +D S I + Sbjct: 328 LSQ-----ENYHTILDEKSLMEWIERLKKAEVFAFDTETDGLDTLSSNLIGM-------- 374 Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF V E ++ L+ H D+ + L + +L+ LK ENE LK+G N+K+D+ Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPAQ--LDRNWVLATLKPLLENEKALKVGQNLKFDQ 428 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L RYGI +RG D ML SYVLDS HD+ S+A+++L++ T +EI K+ + Sbjct: 429 SMLARYGIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I+ Q +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E TG+ Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 IDQ++L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN + RVHT Y A T Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++++ADYSQIELRI+AH+++ L Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLL 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 728 AAFAAGKDIHRATAAEVFGMPLESVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG EY+E+T+ + GYV T+ GRR++ +I+S ++ R ER AI Sbjct: 788 QRYMDLYFERYPGGLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847 Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI +RAMI+V L ++ + ++++Q+HDELVFEV E + +A Q I Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIRDL 907 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME++ + L VPLKV++ V NW + Sbjct: 908 MEQS----MQLAVPLKVDVGVGYNWDQ 930 >gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909] gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909] Length = 932 Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust. Identities = 379/987 (38%), Positives = 567/987 (57%), Gaps = 78/987 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK AV I + DKD+ QLV+P L +T+ + + V +K+G+PPE ++ Sbjct: 121 LAQEAEKADHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + N +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISTLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + + L + + +L EF + + V D Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELKVSAPDDDQLHQLFSRYEFKRWLVDVEAGKWLDGK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 P T N+ A+ ++ +E Sbjct: 301 KDRPTA----QTSNRAFAVAEPVEA-----------------------------VEVTAV 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 LSQ ++Y I++ K + W+++L+ +F TD +D S I I Sbjct: 328 LSQ-----ENYQTILDEKSLADWIERLKKAEVFAFDTETDGLDTLSSNLIGI-------- 374 Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF V E ++ L+ H DS + L ++ +L+ LK E++ LK+G N+K+D+ Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDSPAQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDQ 428 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L RYGI +RG D ML SYVLDS HD+ S+A+++L++ T +EI K+ + Sbjct: 429 SMLARYGIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I+ Q +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E TG+ Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 IDQ++L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN + RVHT Y A T Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++++ADYSQIELRI+AH+++ L Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLL 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG +EKV+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 728 AAFAAGKDIHRATAAEVFGTPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLSIPRGEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ GYV T+ GRR++ +I+S ++ R ER AI Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAI 847 Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI +RAMI+V L ++ + ++++Q+HDELVFEV E + +A Q I Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIREL 907 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME++ + L VPLKV++ V +NW + Sbjct: 908 MEQS----MQLAVPLKVDVGVGDNWDQ 930 >gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107] gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107] Length = 937 Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust. Identities = 367/981 (37%), Positives = 548/981 (55%), Gaps = 90/981 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L+ G P A+ G NML +L RK+ S AV+FD Sbjct: 32 LVLVDGSSYLYRAYHALPPLTNSK-GQPTGAVKGVVNMLRRL----RKDYPQSPIAVVFD 86 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ +YKANRP +PE L PQ+ + QA G+P + I+G EADD+I T Sbjct: 87 AKGKTFRDELFAEYKANRPPMPEDLRPQVQPIHDIVQAMGLPLLVIEGVEADDVIGTLAR 146 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++ V I + DKD+ QLV+ L +T+ + +DI V K+G PE M+ AL Sbjct: 147 QATEQKRDVIISTGDKDMAQLVNEHVTLVNTMTDSVLDIPGVHAKYGFGPELMIDYLALM 206 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETA 240 GD +DNIPG+PG+G KTA L+Q G+L+ I + +++ K E ++E+ + A Sbjct: 207 GDKVDNIPGVPGVGEKTAQGLIQGIGSLDAIYTDLEKVRSLSFRGAKTMPEKLIEHRDMA 266 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +L ++TDV + + E L + + +L + +EF I ++ T Sbjct: 267 YLSYQLATIKTDVELPMGPEALHNQAADNAKLRVLFEEMEFKSWIAELSNT--------- 317 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 I I++++D P K +E+ Sbjct: 318 ----------ESAIEIDSQVD------------------------VPTKTAIEK------ 337 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 Y I + W+ +L+ SF T ++D ++ + ++++T Sbjct: 338 ------HYDIIFTESEFATWLARLQAATEFSFDTETTSLDVMEARIVGVSVAT------- 384 Query: 421 SFKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 + + D G L+ E +L+ LK E+EH +KIG NIKYD+ VL Sbjct: 385 -----EPGVAAYIPCGHDYMGAPEQLSLEWVLNQLKPLLEDEHKIKIGQNIKYDRSVLLN 439 Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534 YGI++RG + D ML SYV +S S H++ +AQ +L Y T +E+ + +++ Sbjct: 440 YGITLRGIKYDTMLESYVWNSVASRHNMDDLAQTYLDYKTVTFEELAGKGVKQLTFNQLK 499 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593 +A E++++ L+L P+L + L V+ ++ P++ V+S +E G +D Sbjct: 500 IEDAGHYAAEDADITLRLHQFFWPQLQQQSGLCKVFREIEMPLVPVLSHIERNGALVDAK 559 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 LL Q S E+ + ++ LE Y+L+G++FNLSSPKQLG ILF +L+ P KT TG T Sbjct: 560 LLGQHSIELGERMVQLERKAYELAGQEFNLSSPKQLGVILFEQLQLPVIKKTPTGTPSTA 619 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + L+++ D P+ K I+E+R ++K+KSTY D LP IN T R+HT Y A TGRL Sbjct: 620 EEVLQELAL-DYPLPKVIMEYRAMAKLKSTYTDKLPLMINPATGRIHTNYHQAVAATGRL 678 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIPIKTD G++IR+AFI+P KL++ADYSQIELRI+AH++ + L FE Sbjct: 679 SSQDPNLQNIPIKTDEGRRIRQAFIAPAGYKLVAADYSQIELRIMAHLSSDSGLLSAFEK 738 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 LD+HR AAE+FGV ++ V+P+MRR AK INF +IYG+S F LA QL + R+EA YI Sbjct: 739 GLDVHRATAAEVFGVALDSVTPEMRRSAKAINFGLIYGMSAFGLAKQLHVGRNEAQQYID 798 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 RYF R+PG+ Y+ + + GYVET+FGRR++ +IN+ + + ER AINAP+Q Sbjct: 799 RYFERYPGVQRYMNNIRAQAHEQGYVETLFGRRLYLPDINAKNKNFQLAAERTAINAPMQ 858 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI + AMI+V L + L K+++Q+HDELV EV E + +V M A Sbjct: 859 GTAADIIKTAMIAVDNWLVEAGLDAKLIMQVHDELVLEVAESCLDEVCTGVVARMSAAA- 917 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 L VPL V+ V NNW E Sbjct: 918 ---RLNVPLIVDAGVGNNWDE 935 >gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4] gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4] Length = 901 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 373/979 (38%), Positives = 554/979 (56%), Gaps = 85/979 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M K + L L+DGSS+++RAF+A P L+ G P A+ G NML KLL E + Sbjct: 1 MVKNSVLILIDGSSYLFRAFHALPPLTTS-KGQPTGAVYGVINMLRKLL----DEHQPHY 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AVIFD TFR+E++ YKA+RP +PE L Q+P + +A G+P + ++G EADD+ Sbjct: 56 VAVIFDAKGKTFRDELFEQYKAHRPPMPEELACQIPPLHDLIRALGLPLLCVEGVEADDV 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T A + I S DKDL QLV+ L ++ + K+D V K+ + PE++V Sbjct: 116 IGTLAQQASGQHLETLISSGDKDLAQLVNHHVSLVNSTNQSKLDPAGVKAKFNVSPEQIV 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 AL GD IDNIPGIPGIG KTAA LL +Y +L+ I+ +A IK K EN+ + Sbjct: 176 DYLALVGDPIDNIPGIPGIGPKTAAKLLDQYHDLDQIMAHAQEIK-GKVGENLRLHLAQL 234 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 L+R+L +R D+P+ + + L + + P L LEF + + Sbjct: 235 PLARQLATVRRDLPLELGPKDLQCQPPDIPTLRELYGTLEFKTWLREL------------ 282 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 +E E DR ++ TS SS Sbjct: 283 ---------------LEKEKDRASSPNTSTDSS--------------------------- 300 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 SY +++ + ++WV++LET +F + T+++D ++ + ++ + + Sbjct: 301 -----PSYETVLSEESFERWVKRLETAELFAFDLETNSLDYIEAEIVGLSFAIKPK---- 351 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 E ++ L+ D+ + +L+ L+ ++ + K+G N+K+D+ VL YG Sbjct: 352 ----EAAYVPLA--HDYDAAPLQLAREGVLARLQPLLQDSNRGKVGQNLKFDRNVLANYG 405 Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536 I + G D ML SYVL S S H++ S+A K+L + + +E+ +P +++ Sbjct: 406 IELEGIRHDSMLESYVLHSTASRHNMDSLALKYLQRSTISYEEVAGKGAKQLPFNQVPID 465 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + +A E++++ LQL P+L E+ L +Y+ L+ P+I V+S+ME G+QID L Sbjct: 466 KATRYAAEDADICLQLHHYFWPRLQQEEALCRLYQELEIPLIPVISRMERNGVQIDATQL 525 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 K SAE++ L +E+ ++L+GE FNL+SPKQ+ IL+ KLK P KT TGQ T Sbjct: 526 KAHSAELTARLEKIEQEAFELAGEPFNLASPKQIQAILYDKLKLPITRKTPTGQPSTAET 585 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 L+++ D P+ + +LE+R LSK+KSTY D LP +N RT RVHT Y A T TGRL+S Sbjct: 586 VLQELAL-DYPLPQLLLEYRALSKLKSTYTDRLPLQVNPRTGRVHTSYHQAVTATGRLSS 644 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIPI++ G++IR+AFI+PP L++ADYSQIELRI+AH++ L FE Sbjct: 645 SDPNLQNIPIRSAEGRRIRQAFIAPPGYCLLAADYSQIELRIMAHLSDDEGLLAAFEAGE 704 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH+ AAEIF +E V+P+ RR AK INF +IYG+S LA QL I RS A YI+RY Sbjct: 705 DIHQRTAAEIFRTPLEGVTPEQRRSAKAINFGLIYGMSAHGLAQQLGISRSAAQHYIERY 764 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 FHR+PG+ Y++ RQ GYVET+FGRR++ EI+S ++ RN ER AINAP+QG+ Sbjct: 765 FHRYPGVKAYMDAICQQARQKGYVETLFGRRLYLPEIHSRQAQRRNQAERMAINAPMQGT 824 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI +RAM+ + L+ +M++Q+HDELVFEV E E+ T + I +M A Sbjct: 825 AADIIKRAMLRADQWLQKQGSNARMIMQVHDELVFEVAEAELDTTTAAIRENMAGAA--- 881 Query: 956 INLRVPLKVNIKVSNNWQE 974 ++VPL V + NW E Sbjct: 882 -QIKVPLIVEMGSGANWDE 899 >gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] Length = 932 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 374/983 (38%), Positives = 570/983 (57%), Gaps = 70/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G AV I + DKD+ QLV+P L +T+ + + V +K+G+PPE ++ Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + N +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISSLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + + L + + +L EF + + A Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELKVTAPDDDQLYQLFSRYEFKRWL-----------A 289 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++E G ++ + DR T +++ + +E +P +E Sbjct: 290 DVE-----------AGKWLDGKKDRPTAQSSNKVF--------VAAESSPA---VEVTAV 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 LSQ ++Y I++ K + W+++L+ +F TD +D S I + + + Sbjct: 328 LSQ-----ENYQTILDEKSLSDWIERLKNAEVFAFDTETDGLDTLSSNLIGFSFA-VAPG 381 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D ++ +L+ LK E+E LK+G N+K+D+ +L Sbjct: 382 EAAYLPVAHDYLDAPTQLDRNW---------VLAQLKPLLEDEKALKVGQNLKFDQSMLA 432 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RY I +RG D ML SYVLDS HD+ S+A+++L++ T +EI K+ + ++I Sbjct: 433 RYDIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E TG+ IDQ Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQ 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 ++L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G T Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAAST 612 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L ++ D P+ K ILE+R L+K+KSTY D LP IN + RVHT Y A T TGR Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPISGRVHTSYHQAVTATGR 671 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++++ADYSQIELRI+AH+++ L F Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDQGLLTAFA 731 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +EKV+ RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 732 AGKDIHRATAAEVFGLPLEKVTNDQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 791 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ + GYV T+ GRR++ +I+S ++ R ER AINAP+ Sbjct: 792 DLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPM 851 Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAMI+V L+ + ++++Q+HDELVFEV E + +A Q I ME++ Sbjct: 852 QGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIRELMEQS 911 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPLKV++ V +NW + Sbjct: 912 ----MQLAVPLKVDVGVGDNWDQ 930 >gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 932 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 380/987 (38%), Positives = 577/987 (58%), Gaps = 78/987 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G AV I + DKD+ QLV+P L +T+ + + V +K+G+PPE ++ Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+++ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFNHLDKIPTLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + I + L + + +L EF + + A Sbjct: 241 DVAYLSYKLATIKTDVELDITCDELNVSAPDDEQLHQLFSRYEFKRWL-----------A 289 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++E G ++ + DR T +++ + + E P E Sbjct: 290 DVE-----------AGKWLDGKKDRPTAQASNK--------AFVAPESAP---VAEVTAV 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 LSQ ++Y I++ K + W+++L+ +F TD +D S I + Sbjct: 328 LSQ-----ENYQTILDEKSLSDWIERLKKAEVFAFDTETDGLDTLSSNLIGL-------- 374 Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF V E ++ L+ H D+ + L ++ +L+ LK E++ LK+G N+K+D+ Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPAQ--LDRDWVLAQLKPLLEDDKALKVGQNLKFDQ 428 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L RYGI +RG D ML SYVLDS HD+ S+A+++L++ T +EI K+ + Sbjct: 429 SMLARYGIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I+ Q +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E TG+ Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 IDQ++L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN + RVHT Y A T Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++++ADYSQIELRI+AH+++ L Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLL 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG+++EKV+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 728 AAFAAGKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ + GYV T+ GRR++ +I+S ++ R ER AI Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAI 847 Query: 889 NAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI +RAMI+V L+ + ++++Q+HDELVFEV E + +A Q I Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHDELVFEVHESVLESAEQKIREL 907 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME++ + L VPLKV++ V NW + Sbjct: 908 MEQS----MQLAVPLKVDVGVGYNWDQ 930 >gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163] gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163] Length = 929 Score = 632 bits (1631), Expect = e-179, Method: Compositional matrix adjust. Identities = 369/986 (37%), Positives = 559/986 (56%), Gaps = 79/986 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G A+ G NML LLQ SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEATGAMYGVLNMLRSLLQQYSP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YKA+RP +PE L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHNMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G +V I + DKD+ QLV+P+ L +T+ + + V K+GIPPE ++ Sbjct: 121 LAVQAEKAGKSVLISTGDKDMAQLVTPSVTLINTMNNTILGPQEVCDKYGIPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+PG+G KTA LLQ G L+++ N +I K + ++ Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAGLSFRGAKTMAPKLEQHK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDA 296 E A LS +L ++TDV + + + L + + + L EF + ++ + + T+ Sbjct: 241 EVAYLSYQLATIKTDVELELSCDQLTVNELDVDELHRLFSRYEFKRWLSDIESGTWMQGK 300 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 + +PV T N +E ++ D S Sbjct: 301 KSSQPV----QTVSNA--VVEQAVEEDNVPTLSA-------------------------- 328 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 D Y I++ K + WV++L+ +F TD +D + I ++ + + Sbjct: 329 ---------DGYVTILDEKTLLDWVERLKLADVFAFDTETDGLDTLTANLIGLSFA-IKP 378 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + + ++D + D + T +L+ LK E+E LKIG N+K+DK V+ Sbjct: 379 GEAAYLPLAHDYLD-----APDQLDRAT----VLALLKPLLEDEKLLKIGQNLKFDKGVM 429 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 RY I +RG D ML SYVLDS HD+ S+A+++L + T +EI K+ + ++ Sbjct: 430 QRYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLKHKTITFEEIAGKGKNQLTFNQ 489 Query: 533 ISDSQVQEHAIENSNVILQL----WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 I+ Q +A E+++V L L W L+P L V++ +D P++ V+S++E TG+ Sbjct: 490 IALEQAGPYAAEDADVTLHLHQTLWGKLQPH---ADLCQVFQTIDMPLVPVLSRIERTGV 546 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ID +L + S E++ L LE Y+L+GE+FNLSS KQL IL+ K K P KT G Sbjct: 547 LIDPAILAEHSKELTTRLAELEIQAYELAGEEFNLSSTKQLQGILYEKQKLPILKKTPKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN T+RVHT Y A T Sbjct: 607 APSTNEEVLAELAL-DYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQAVT 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ D G++IR+AFI+P +++ADYSQIELRI+AH++ L Sbjct: 666 ATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSGDEGLL 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F N LDIHR A+E+FG+ ++KV+ + RR AK INF +IYG+S F L+ QL IPRSE+ Sbjct: 726 NAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSES 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ +Y+E+T+ ++GYV T+ GRR++ +I+S + R ERAAI Sbjct: 786 QKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI ++AMI++ L+ KM++Q+HDELVFE+ ++ I S + + Sbjct: 846 NAPMQGTAADIIKKAMIAIDDWLQKDAPKVKMIMQVHDELVFEI-DDSIVEESISKIKVL 904 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 + C+ L VPL+V+I NW + Sbjct: 905 MEGCM---QLNVPLQVDIGTGMNWDQ 927 >gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953] gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953] gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] Length = 932 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 381/987 (38%), Positives = 574/987 (58%), Gaps = 78/987 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G +V I + DKD+ QLV+P L +T+ + + V K+G+PPE ++ Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + N +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + + L + + +L EF + + A Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWL-----------A 289 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++E G ++++ DR T +SQ S + ++ P E Sbjct: 290 DVE-----------AGKWLDSKKDRPTGQTSSQ--------SFVAADTAPTA---EVTAV 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 LSQ ++Y I++ K + W+++L+ +F TD +D I + Sbjct: 328 LSQ-----ENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGM-------- 374 Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF V E ++ L+ H D+ + L ++ +L+ LK E++ LK+G N+K+DK Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPPQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDK 428 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L RYGI ++G D ML SYVLDS HD+ S+A+++L++ T +EI K+ + Sbjct: 429 SMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I+ Q +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E TG+ Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 IDQ++L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN + RVHT Y A T Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P +++ADYSQIELRI+AH+++ L Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLL 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG +EKV+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 728 AAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ + GYV T+ GRR++ +I+S ++ R ER AI Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847 Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI +RAMI+V L ++ + ++++Q+HDELVFEV E + +A Q I Sbjct: 848 NAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIREL 907 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 MEK+ + L VPLKV++ V NW + Sbjct: 908 MEKS----MQLAVPLKVDVGVGANWDQ 930 >gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10] gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua] gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516] gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92] gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516] gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003] gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10] gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516] gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua] gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92] gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516] gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004] gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003] gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 932 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 380/987 (38%), Positives = 574/987 (58%), Gaps = 78/987 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLLLVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G +V I + DKD+ QLV+P L +T+ + + V K+G+PPE ++ Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + N +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + + L + + +L EF + + A Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWL-----------A 289 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++E G ++++ DR T +SQ S + ++ P E Sbjct: 290 DVE-----------AGKWLDSKKDRPTGQTSSQ--------SFVAADTAPTA---EVTAV 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 LSQ ++Y I++ K + W+++L+ +F TD +D I + Sbjct: 328 LSQ-----ENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGM-------- 374 Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF V E ++ L+ H D+ + L ++ +L+ LK E++ LK+G N+K+DK Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPPQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDK 428 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L RYGI ++G D ML SYVLDS HD+ S+A+++L++ T +EI K+ + Sbjct: 429 SMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I+ Q +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E TG+ Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 IDQ++L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN + RVHT Y A T Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P +++ADYSQIELRI+AH+++ L Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLL 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG +EKV+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 728 AAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ + GYV T+ GRR++ +I+S ++ R ER AI Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847 Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI +RAMI+V L ++ + ++++Q+HDELVFEV E + +A Q I Sbjct: 848 NAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIREL 907 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME++ + L VPLKV++ V NW + Sbjct: 908 MEQS----MQLAVPLKVDVGVGANWDQ 930 >gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] Length = 932 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 380/987 (38%), Positives = 574/987 (58%), Gaps = 78/987 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G +V I + DKD+ QLV+P L +T+ + + V K+G+PPE ++ Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + N +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + + L + + +L EF + + A Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWL-----------A 289 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++E G ++++ DR T +SQ S + ++ P E Sbjct: 290 DVE-----------AGKWLDSKKDRPTGQTSSQ--------SFVAADTAPTA---EVTAV 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 LSQ ++Y I++ K + W+++L+ +F TD +D I + Sbjct: 328 LSQ-----ENYQTILDEKALSDWIERLKAAEVFAFDTETDGLDTLSCNLIGM-------- 374 Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF V E ++ L+ H D+ + L ++ +L+ LK E++ LK+G N+K+DK Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPPQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDK 428 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L RYGI ++G D ML SYVLDS HD+ S+A+++L++ T +EI K+ + Sbjct: 429 SMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I+ Q +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E TG+ Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 IDQ++L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN + RVHT Y A T Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P +++ADYSQIELRI+AH+++ L Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLL 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG +EKV+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 728 AAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ + GYV T+ GRR++ +I+S ++ R ER AI Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847 Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI +RAMI+V L ++ + ++++Q+HDELVFEV E + +A Q I Sbjct: 848 NAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIREL 907 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME++ + L VPLKV++ V NW + Sbjct: 908 MEQS----MQLAVPLKVDVGVGANWDQ 930 >gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 929 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 372/989 (37%), Positives = 562/989 (56%), Gaps = 85/989 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEATGAMYGVLNMLRSLLLQYQP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YKA+RP +PE L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHNMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P+ L +T+ + + V K+GIPPE ++ Sbjct: 121 LAVQAEKAGKPVLISTGDKDMAQLVTPSVTLINTMNNSILGPQEVCDKYGIPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GD+ DNIPG+PG+G KTA LLQ G L+++ N +I + K + ++ Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAELSFRGAKTMAPKLEQHK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++TDV + + E L + + + L EF + + Sbjct: 241 DVAYLSYQLATIKTDVELDLSSEQLTVNEPDVDELHRLFSRYEFKRWL------------ 288 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++++ T ++ + S SK+ EQ ++ Sbjct: 289 --------------------SDVESGTWLEGKKSSQPVPAVSKVVVEQAAEE-------- 320 Query: 358 LSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 S P ++ D Y I++ + + W+++L+ +F TD +D + I + Sbjct: 321 -SNAPALSADGYVTILDEETLLDWIERLKQAEVFAFDTETDGLDTLTANLIGL------- 372 Query: 417 KDDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 SF + E ++ L+ H D+ + K +L+ K E+E LKIG N+K+DK Sbjct: 373 ----SFAIKPGEAAYLPLA-HDYLDAPEQLDRAK-VLALFKPLLEDEKLLKIGQNLKFDK 426 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 V+ RY I +RG D ML SYVLDS HD+ S+A+++L++ T +EI K+ + Sbjct: 427 GVMQRYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 486 Query: 530 IDKISDSQVQEHAIENSNVIL----QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 ++I+ Q +A E+++V L +LW L+P L V++ +D P++ V+S++E Sbjct: 487 FNQIALEQAGPYAAEDADVTLHLHQKLWGKLQPH---ADLCQVFQTIDMPLVPVLSRIER 543 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 TG+ ID +L + S E++ L LE Y+L+GE+FNLSS KQL IL+ K K P KT Sbjct: 544 TGVLIDPAILAEHSKELTTRLAELETQAYELAGEEFNLSSTKQLQGILYEKQKLPILKKT 603 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 G T + L ++ D P+ K ILE+R L+K+KSTY D LP IN T+RVHT Y Sbjct: 604 PKGAPSTNEEVLAELAL-DYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQ 662 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A T TGRL+S +PNLQNIP++ D G++IR+AFI+P +++ADYSQIELRI+AH++ Sbjct: 663 AVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSGDK 722 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F N LDIHR A+E+FG ++KV+ + RR AK INF +IYG+S F L+ QL IPR Sbjct: 723 GLLNAFANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPR 782 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 SE+ Y+ YF R+PG+ +Y+E+T+ ++GYV T+ GRR++ +I+S + R ER Sbjct: 783 SESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAER 842 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AAINAP+QG+AADI ++AMI++ L+ KM++Q+HDELVFE+ + I + I Sbjct: 843 AAINAPMQGTAADIIKKAMIAIDDWLQKDAPQVKMIMQVHDELVFEIHDSVIEESISKIK 902 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME C+ L VPL+V+I NW E Sbjct: 903 TLME-GCM---ELNVPLQVDIGTGMNWDE 927 >gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 929 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 374/989 (37%), Positives = 560/989 (56%), Gaps = 85/989 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEATGAMYGVLNMLRSLLLQYQP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YKA+RP +PE L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHQMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P+ L +T+ + + V K+GIPPE ++ Sbjct: 121 LAVQAEKAGKPVLISTGDKDMAQLVTPSVTLINTMNNSILGPQEVCDKYGIPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+PG+G KTA LLQ G L+++ N +I K + ++ Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAGLSFRGAKTMAPKLEQHK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++TDV + + + L + + + L EF + + Sbjct: 241 DVAYLSYQLATIKTDVELELSCDQLTVNELDVDELHRLFSRYEFKRWL------------ 288 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++I+ T ++ + S S EQ ++ Sbjct: 289 --------------------SDIESGTWMQGKKSSQPVQAVSNAVVEQVAEE-------- 320 Query: 358 LSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 P ++ D Y I++ K + WV++L+ +F TD +D + I + Sbjct: 321 -DNAPTLSADGYVTILDEKTLLDWVERLKLAEVFAFDTETDGLDTLTANLIGL------- 372 Query: 417 KDDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 SF + E ++ L+ H D+ + TK +L+ K E+E LKIG N+K+DK Sbjct: 373 ----SFAIKPGEAAYLPLA-HDYLDAPEQLDRTK-VLALFKPLLEDEKLLKIGQNLKFDK 426 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 V+ RY I +RG D ML SYVLDS HD+ S+A+++LS+ T +EI K+ + Sbjct: 427 GVMQRYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLSHKTITFEEIAGKGKNQLT 486 Query: 530 IDKISDSQVQEHAIENSNVIL----QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 ++I+ Q +A E+++V L +LW L+P L V++ +D P++ V+S++E Sbjct: 487 FNQIALEQAGPYAAEDADVTLHLHQKLWGKLQPH---ADLCQVFQTIDMPLVPVLSRIER 543 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 TG+ ID +L + S E++ L LE Y+L+GE+FNLSS KQL IL+ K K P KT Sbjct: 544 TGVLIDPAILAEHSKELTIRLAELETQAYELAGEEFNLSSTKQLQGILYEKQKLPILKKT 603 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 G T + L ++ D P+ K ILE+R L+K+KSTY D LP IN T+RVHT Y Sbjct: 604 PKGAPSTNEEVLAELAL-DYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQ 662 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A T TGRL+S +PNLQNIP++ D G++IR+AFI+P +++ADYSQIELRI+AH++ Sbjct: 663 AVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPKGYSIVAADYSQIELRIMAHLSGDK 722 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F N LDIHR A+E+FG+ ++KV+ + RR AK INF +IYG+S F L+ QL IPR Sbjct: 723 GLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPR 782 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 SE+ Y+ YF R+PG+ +Y+E+T+ ++GYV T+ GRR++ +I+S + R ER Sbjct: 783 SESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAER 842 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AAINAP+QG+AADI ++AMI++ L+ KM++Q+HDELVFE+ + I + I Sbjct: 843 AAINAPMQGTAADIIKKAMIAIDDWLQKDTPKVKMIMQVHDELVFEIHDSVIEESISKIK 902 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME C+ L VPL+V+I NW E Sbjct: 903 ALME-GCM---QLNVPLQVDIGTGMNWDE 927 >gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] Length = 932 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 376/983 (38%), Positives = 570/983 (57%), Gaps = 70/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G AV I + DKD+ QLV+P L +T+ + + V +K+G+PPE ++ Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + N +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFSNLDKISTLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + I + L + + +L EF + + A Sbjct: 241 DVAYLSYKLATIKTDVELDITCDELKVSPPDDDQLHQLFSRYEFKRWL-----------A 289 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++E G +E + DR T + ++ + + SE E Sbjct: 290 DVE-----------AGKWLEGKKDRPT--------AQTNNRAFVTSEPVAAA---EVTAV 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 LSQ D+Y I++ K + W+++L+ +F TD +D S I ++ + + Sbjct: 328 LSQ-----DNYQTILDEKSLADWIERLKKAEVFAFDTETDGLDTLSSNLIGLSFA-VAPG 381 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D +D +L+ LK E++ LK+G N+K+D+ +L Sbjct: 382 EAAYLPVAHDYLDAPAQLDRDW---------VLAQLKPLLEDDKALKVGQNLKFDQSMLA 432 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RY I++RG D ML SYVL+S HD+ S+A+++L++ T +EI K+ + ++I Sbjct: 433 RYDINLRGIAFDTMLESYVLNSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V LQL L+L PKL E L V++ ++ P++ V+S++E TG+ IDQ Sbjct: 493 ALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKQVFQEIEMPLLPVLSRIERTGVLIDQ 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 ++L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G T Sbjct: 553 NILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGGAAST 612 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L ++ D P+ K ILE+R L+K+KSTY D LP I+ + RVHT Y A T TGR Sbjct: 613 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMISPVSGRVHTSYHQAVTATGR 671 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++++ADYSQIELRI+AH+++ L F Sbjct: 672 LSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFA 731 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +EKV+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 732 AGKDIHRATAAEVFGLPLEKVTHEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 791 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ GYV T+ GRR++ EI+S ++ R ER AINAP+ Sbjct: 792 DLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPEIHSRNATRRKAAEREAINAPM 851 Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAMI+V L ++ + ++++Q+HDELVFEV E + + Q + ME++ Sbjct: 852 QGTAADIIKRAMIAVDAWLQQEPEPKVRVIMQVHDELVFEVHESVLESTEQKVRELMEQS 911 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPLKV+I V +NW + Sbjct: 912 ----MQLAVPLKVDIGVGDNWDQ 930 >gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola] gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A] gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola] gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A] Length = 932 Score = 631 bits (1628), Expect = e-178, Method: Compositional matrix adjust. Identities = 380/987 (38%), Positives = 574/987 (58%), Gaps = 78/987 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G +V I + DKD+ QLV+P L +T+ + + V K+G+PPE ++ Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + N +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + + L + + +L EF + + A Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWL-----------A 289 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++E G ++++ DR T +SQ S + ++ P E Sbjct: 290 DVE-----------AGKWLDSKKDRPTGQTSSQ--------SFVAADTAPTA---EVTAV 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 LSQ ++Y I++ K + W+++L+ +F TD +D I + Sbjct: 328 LSQ-----ENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGM-------- 374 Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF V E ++ L+ H D+ + L ++ +L+ LK E++ LK+G N+K+DK Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPPQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDK 428 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L RYGI ++G D ML SYVLDS HD+ S+A+++L++ T +EI K+ + Sbjct: 429 SMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I+ Q +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E TG+ Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 IDQ++L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN + RVHT Y A T Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P +++ADYSQIELRI+AH+++ L Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLL 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG +EKV+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 728 AAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ + GYV T+ GRR++ +I+S ++ R ER AI Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847 Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI +RAMI+V L ++ + ++++Q+HDELVFEV E + +A Q I Sbjct: 848 NAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIREL 907 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME++ + L VPLKV++ V NW + Sbjct: 908 MEQS----MQLAVPLKVDVGVGANWDQ 930 >gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] Length = 929 Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust. Identities = 372/990 (37%), Positives = 570/990 (57%), Gaps = 87/990 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + SH AV Sbjct: 6 DNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRTQIEPLHQMVEAMGLPLLVVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEKEG AV I + DKD+ QLV+P L +T+ + E V++K+G+PPE ++ Sbjct: 121 LALQAEKEGRAVLISTGDKDMAQLVTPNITLINTMNNTILGPEEVVEKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G +++I N +I K + ++++ Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALGLLQGIGGMDDIFANLDKIAGLSFRGAKTLADKMVQHK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++TDV + L +++ + +L EF + ++ VA Sbjct: 241 DVAYLSYQLATIKTDVELDKTCVALSVKEPDTEKLHQLFSRYEFKRWLSDVANGDWLAEK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +PV S N E +P + K Sbjct: 301 GKKPV------------------------------------STGNDESSPTE------DK 318 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI--AISTLD 415 + +++D+Y I++ + +W++KL+ +F TD++D + + + AIS D Sbjct: 319 SAAATLSSDNYQTILDQQSFDEWIEKLKKASVFAFDTETDSLDTLTANLVGVSFAISAGD 378 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKYDK 473 ++ L D G L +E+ L+ LK E+ + LKIG NIK+D+ Sbjct: 379 ----------AAYLPLG----HDYLGAPEQLDREVVLAALKPLLEDSNLLKIGQNIKFDR 424 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSY---TRKEILKSRKSS 527 VL RYGI ++G D ML SYVL+S G HD+ S+A++ L++ T +EI K+ Sbjct: 425 GVLARYGIELQGIAYDTMLESYVLNSVAGMGRHDMDSLAERHLNHKTTTFEEIAGKGKNQ 484 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKPMIDVVSQME 584 + ++++ Q +A E+++V L L + P+L EK L V+ + P++ V+S+ME Sbjct: 485 LTFNQVAVEQAAMYAAEDADVTLLLHQAMWPQL--EKAPTLEKVFLNTEMPLVMVLSRME 542 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 TG+ ID ++L + S EI+ L LE+ ++L+GE FNL+SPKQL ILF KL+ P K Sbjct: 543 RTGVLIDANILAEHSKEITARLDELEKEAHELAGEVFNLASPKQLQTILFEKLQLPVVKK 602 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 T G T + LE++ + + K ILE R L+K+KSTY D LP ++ T+RVHT Y Sbjct: 603 TPNGAPSTNEEVLEEL-ADTHALPKVILEHRGLAKLKSTYTDKLPQMVHPLTKRVHTSYH 661 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 A T TGRL+S +PNLQNIP++ G++IR+AF++P ++++ADYSQIELRI+AH+++ Sbjct: 662 QAVTATGRLSSRDPNLQNIPVRNKEGRRIRQAFVAPEGYRIMAADYSQIELRIMAHLSQD 721 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + F DIHR AAE+FG+ +E+V+ + RR AK INF +IYG+S F L+ QL IP Sbjct: 722 QGLLKAFAEGKDIHRATAAEVFGLPLEQVTSEQRRSAKAINFGLIYGMSAFGLSRQLGIP 781 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R EA Y+ YF R+PG+ Y+E+T+ + GYVET+ GRR++ +I S + R E Sbjct: 782 RGEAQRYMDLYFERYPGVLAYMERTRKQAEEQGYVETLDGRRLYLSDIKSRNAMRRKAAE 841 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R AINAP+QG+AADI ++AMI+V + + +M++Q+HDELVFEV E E+ A Q I Sbjct: 842 REAINAPMQGTAADIIKKAMIAVDDWIVSEEPKVRMIMQVHDELVFEVHESELEYAEQKI 901 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 MEK+ + L VPLKV++ + +NW + Sbjct: 902 RELMEKSMV----LDVPLKVDVGIGDNWDQ 927 >gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] Length = 932 Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust. Identities = 374/987 (37%), Positives = 571/987 (57%), Gaps = 78/987 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G +V I + DKD+ QLV+P L +T+ + + V +K+G+PPE ++ Sbjct: 121 LAQEAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+++ N +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + + L + + +L EF + + V D Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDEQLHQLFSRYEFKRWLADVEEGKWLDGK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 P T NK T ++ + ++ T+ ++ E Sbjct: 301 KERPT----GQTSNK------------TFVATEPAPAAEVTAVLSQE------------- 331 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +Y I++ K + W+++L+ +F TD +D + I + Sbjct: 332 ---------NYHTILDEKSLADWIERLKKADVFAFDTETDGLDTLSNNLIGL-------- 374 Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF V E ++ L+ H D+ + L ++ +L+ LK E++ LK+G N+K+D+ Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPAQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDQ 428 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L RYGI +RG D ML SYVL+S HD+ S+A+++L++ T +EI K+ + Sbjct: 429 SMLARYGIELRGIAFDTMLESYVLNSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I+ Q +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E TG+ Sbjct: 489 FNQIALEQAGPYASEDADVTLQLHLVLWPKLQESEGLKRVFQEIEMPLLPILSRIERTGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 IDQ++L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN + RVHT Y A T Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++++ADYSQIELRI+AH+++ L Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPQGYRIMAADYSQIELRIMAHLSQDEGLL 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG+ +EKV+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 728 TAFAAGKDIHRATAAEVFGLPLEKVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ GYV T+ GRR++ +I+S ++ R ER AI Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847 Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI +RAMI+V L ++ + ++++Q+HDELVFEV E + +A Q I Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIREL 907 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME++ + L VPLKV++ V +NW + Sbjct: 908 MEQS----MQLAVPLKVDVGVGDNWDQ 930 >gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] Length = 932 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 379/987 (38%), Positives = 573/987 (58%), Gaps = 78/987 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLLLVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G +V I + DKD+ QLV+P L +T+ + + V K+G+PPE ++ Sbjct: 121 LAREAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNTILGPQDVCDKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + N +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + + L + + +L EF + + A Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWL-----------A 289 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++E G ++++ DR T +SQ S + ++ P E Sbjct: 290 DVE-----------AGKWLDSKKDRPTGQTSSQ--------SFVAADTAPTA---EVTAV 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 LSQ ++Y I++ K + W+++L+ +F TD +D I + Sbjct: 328 LSQ-----ENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGM-------- 374 Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF V E ++ L+ H D+ + L ++ +L+ LK E++ LK+G N+K+DK Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPPQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDK 428 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L RYGI ++G D ML SYVLDS HD+ S+A+++L++ T +EI K+ + Sbjct: 429 SMLARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I+ Q +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E G+ Sbjct: 489 FNQIALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERAGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 IDQ++L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN + RVHT Y A T Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P +++ADYSQIELRI+AH+++ L Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLL 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG +EKV+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 728 AAFAAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ + GYV T+ GRR++ +I+S ++ R ER AI Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847 Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI +RAMI+V L ++ + ++++Q+HDELVFEV E + +A Q I Sbjct: 848 NAPMQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIREL 907 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME++ + L VPLKV++ V NW + Sbjct: 908 MEQS----MQLAVPLKVDVGVGANWDQ 930 >gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 696 Score = 629 bits (1622), Expect = e-178, Method: Compositional matrix adjust. Identities = 306/704 (43%), Positives = 452/704 (64%), Gaps = 19/704 (2%) Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339 EFT L RVA D DA+++EP ++ + + + ++ SQ S + + Sbjct: 1 EFTSLTRRVAEATDTDASSVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAA 58 Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399 + + TP+ L R + I+ +Y I + ++QW+ + G +F T ++ Sbjct: 59 EPDQGYTPKALAEGRAAQAIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSL 118 Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYL 453 D ++ + +++ K ++ L + + D G + +I L+ L Sbjct: 119 DPMQAELVGFSLALAPGK--------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAAL 170 Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513 K+ E+ LKI N+KYD LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL Sbjct: 171 KRVLEDASILKIAQNMKYDWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWL 230 Query: 514 SYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570 +T K++ S KS++ D + + +A E+++V L+LW +L+P+L E L+ VYE Sbjct: 231 GHTPIAYKDVAGSGKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYE 290 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 RL++P++DV+++ME GI +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLG Sbjct: 291 RLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLG 350 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 DILF K+ P +KTKTGQW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP Sbjct: 351 DILFGKMGLPGASKTKTGQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPG 410 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750 IN +T+RVHT Y++AST TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADY Sbjct: 411 FINPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADY 470 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELR+LAH+A I L Q F + +DIH M A+E+FGV +E + ++RR AK INF IIY Sbjct: 471 SQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIY 530 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 GIS F LA QL IPR EA YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY Sbjct: 531 GISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYP 590 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 +I + +R NERAAINAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+F Sbjct: 591 DIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIF 650 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EVPE E+ ++ ME A +P ++L VPL+V+ + ++NW E Sbjct: 651 EVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNWDE 694 >gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T] gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T] Length = 939 Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust. Identities = 370/981 (37%), Positives = 555/981 (56%), Gaps = 60/981 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R G P AI G +ML +L + + E A +FD Sbjct: 4 LLLVDGSSYLYRAFHALPDL-RNSQGEPTGAIRGVLSMLRRLESDYKAE----FRACVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ YP+YK++RP +P+ L Q+ + A +A G P + ++G EADD+I T T Sbjct: 59 AKGKTFRDDWYPEYKSHRPPMPDDLRAQIAPLHEAVRAEGWPLLSVEGVEADDVIGTLTR 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +A + G+ V I + DKDL QLV P +T+ EE +D V K+G+PPE++V AL Sbjct: 119 LALERGWEVVISTGDKDLTQLVRPGVRWVNTMSEEVLDEAGVAAKFGVPPERIVDYLALV 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L EYG L+N++ NA ++ K EN+ + + L RKL Sbjct: 179 GDTVDNVPGVEKCGPKTAVKWLTEYGTLDNLVANADKVGGKVG-ENLRRHLDFLPLGRKL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN-IEPVVLD 305 V + TDV + + L+ L + L + + EF + + + AA+ Sbjct: 238 VTVATDVELPVGLDELPARADDKAALRALYERFEFKSWLKDLDGGAESVAASKAASDARR 297 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 + EN+G +T I T + + + + TP Sbjct: 298 FDRQENRG---QTPISEAATTTPGEGGVCAISADEQMKDLTP------------------ 336 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 Y I++ W+ K+ +F T ++D ++ + + SF VE Sbjct: 337 -VYLPILDWPTFDAWLAKISAAELTAFDTETTSLDPMAARLVGM-----------SFAVE 384 Query: 426 ---TIFIDLSVHTSQD--STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 ++ L+ + + E+L L+ +FE++ K+G N+KYD VL +G Sbjct: 385 PGEAAYLPLAHRGAAQLPEAPEQLPLDEVLDRLRPWFESDRHAKLGQNLKYDAHVLANHG 444 Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS-----YTRKEILKSRKSSIPIDKIS 534 I++RG D +L SYVL+S ++ HD+ S+A++ L YT E+ I D++ Sbjct: 445 IALRGIAHDTLLESYVLESDKA-HDMDSLAKRHLGLATIPYT--EVCGKGAKQIGFDEVD 501 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 ++ E+A E+++V L+L L P+L + +L +Y L+ P++ V+ +ME TG+ ID Sbjct: 502 VARATEYAAEDADVTLRLHQHLCPQLQALPQLEALYRELEMPVLGVLQRMERTGVLIDPF 561 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 LL Q S E+ + L +LE + L+G+ FNL SPKQLG+ILF KL P KT TGQ T Sbjct: 562 LLGQHSEELGRRLYTLEGEAHALAGQPFNLGSPKQLGEILFGKLGLPVVKKTATGQPSTD 621 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + LE++ D P+ K +LE R LSK+KSTYAD LP +N RT RVHT +S A+ +TGRL Sbjct: 622 EEVLEKL-AEDYPLPKLLLEHRGLSKLKSTYADKLPRMVNPRTGRVHTSFSQATAVTGRL 680 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S EPNLQNIPI+T G++IR AFI+P ++SADYSQIELRI+AH++ L + F Sbjct: 681 SSSEPNLQNIPIRTPEGRRIRAAFIAPRDHLIVSADYSQIELRIMAHLSDDARLLEAFAR 740 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 D+HR A E+FGV +V+ + RR+AK INF +IYG+S LA L I R+ A +I Sbjct: 741 GEDVHRATAGEVFGVAPAEVTSEQRRYAKVINFGLIYGMSAHGLAKNLGIERAAAQAWID 800 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 RYF R+PG+ EY+++T+ R+ GYVET+FGRR++ +I + ++ R ERAAINAP+Q Sbjct: 801 RYFARYPGVAEYMDRTRAEAREQGYVETVFGRRLYLPDIRASQAGRRAGAERAAINAPMQ 860 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AAD+ ++AMI+ L L +K++LQ+HDELV EVP E+ T + + M Sbjct: 861 GTAADLIKKAMIATDAWLASCGLKSKLVLQVHDELVLEVPGAELETVREELPRLMGGVA- 919 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 L+VPL V + +NW E Sbjct: 920 ---TLKVPLLVEVGAGDNWDE 937 >gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] Length = 932 Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust. Identities = 375/987 (37%), Positives = 565/987 (57%), Gaps = 78/987 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNG-SGEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G +V I + DKD+ QLV+P L +T+ + + V +K+G+PPE ++ Sbjct: 121 LAQEAEKAGHSVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+++ N +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + + L + + +L EF + + V D Sbjct: 241 DVAYLSYKLATIKTDVELDVTCDELTVSPPDDEQLHQLFSRYEFKRWLADVEAGKWLDGK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 P T NK A T+ S Sbjct: 301 KERPT----GQTSNK--AFVAAEPAPAAEVTAVLS------------------------- 329 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++Y I++ K + W+++L+ +F TD +D S I + Sbjct: 330 -------QENYQTILDEKSLADWIERLKKSEVFAFDTETDGLDTLSSNLIGL-------- 374 Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF V E ++ L+ H D+ + L ++ +L+ LK E+E LK+G N+K+D+ Sbjct: 375 ---SFAVAPGEAAYLPLA-HDYLDAPAQ--LDRDWVLATLKPLLEDEKALKVGQNLKFDQ 428 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L RYGI +RG D ML SYVL+S HD+ S+A+++L++ T +EI K+ + Sbjct: 429 SMLARYGIELRGIAFDTMLESYVLNSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLT 488 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I+ + +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E TG+ Sbjct: 489 FNQIALEEAGPYASEDADVTLQLHLVLWPKLQESEGLKRVFQEIEMPLLPILSRIERTGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 IDQ++L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G Sbjct: 549 LIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN + RVHT Y A T Sbjct: 609 AASTNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVT 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++++ADYSQIELRI+AH+++ L Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDEGLL 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG+ +EKV+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 728 AAFAAGKDIHRATAAEVFGLPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ GYV T+ GRR++ +I+S ++ R ER AI Sbjct: 788 QRYMDLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAI 847 Query: 889 NAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI +RAMI+V L ++ + ++++Q+HDELVFEV E + +A Q I Sbjct: 848 NAPMQGTAADIIKRAMIAVDAWLQQESEPLVRVIMQVHDELVFEVHESVLESAEQKIREL 907 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME++ + L VPLKV++ V +NW + Sbjct: 908 MEQS----MQLAVPLKVDVGVGDNWDQ 930 >gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 929 Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust. Identities = 373/989 (37%), Positives = 562/989 (56%), Gaps = 85/989 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEATGAMYGVLNMLRSLLLQYQP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YKA+RP +PE L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHKMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G +V I + DKD+ QLV+P+ L +T+ + + V K+GIPPE ++ Sbjct: 121 LAVQAEKAGKSVLISTGDKDMAQLVTPSVTLINTMNNSILGPQEVCDKYGIPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+PG+G KTA LLQ G L+++ N +I K + ++ Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAGLSFRGAKTMAPKLEQHK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDA 296 E A LS +L ++TDV + + + L + + + L EF + ++ V + T+ Sbjct: 241 EVAYLSYQLATIKTDVELELSCDQLTVNELDVDELHRLFSRYEFKRWLSDVESGTWMQGK 300 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 + +PV + S++ +Q + ++ T Sbjct: 301 KSSQPV-------------------------QAVSSAVVEQVVEEDNAPT---------- 325 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 ++ D Y I++ K + W+++L+ +F TD +D + I + Sbjct: 326 ------LSTDGYVTILDEKTLLDWIERLKQAEVFAFDTETDGLDTLTANLIGL------- 372 Query: 417 KDDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 SF + E ++ L+ H D+ + TK +L+ K E+E LKIG N+K+DK Sbjct: 373 ----SFAIKPGEAAYLPLA-HDYLDAPEQLDRTK-VLALFKPLLEDEKLLKIGQNLKFDK 426 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 V+ RY I +RG D ML SYVLDS HD+ S+A+++LS+ T +EI K+ + Sbjct: 427 GVMQRYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLSHKTITFEEIAGKGKNQLT 486 Query: 530 IDKISDSQVQEHAIENSNVIL----QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 ++I+ Q +A E+++V L +LW L+P L V++ +D P++ V+S++E Sbjct: 487 FNQIALEQAGPYAAEDADVTLHLHQKLWGKLQPH---TDLCQVFQTIDMPLVPVLSRIER 543 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 TG+ ID +L + S ++ L LE Y+L+GE+FNLSS KQL IL+ K K P KT Sbjct: 544 TGVLIDPAILAEHSKRLTIRLAELETQAYELAGEEFNLSSTKQLQGILYEKQKLPILKKT 603 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 G T + L ++ G P+ K ILE+R L+K+KSTY D LP IN T+RVHT Y Sbjct: 604 PKGAPSTNEEVLAELALG-YPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQ 662 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A T TGRL+S +PNLQNIP++ D G++IR+AFI+P +++ADYSQIELRI+AH++ Sbjct: 663 AVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYSIVAADYSQIELRIMAHLSGDK 722 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F N LDIHR A+E+FG ++KV+ + RR AK INF +IYG+S F L+ QL IPR Sbjct: 723 GLLNAFANGLDIHRATASEVFGTALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPR 782 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 SE+ Y+ YF R+PG+ +Y+E+T+ ++GYV T+ GRR++ +I+S + R ER Sbjct: 783 SESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAER 842 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AAINAP+QG+AADI ++AMI++ L KM++Q+HDELVFE+ + I + I Sbjct: 843 AAINAPMQGTAADIIKKAMIAIDDWLRKDTPKVKMIMQVHDELVFEIHDSVIEESISKIK 902 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME C+ L VPL+V+I NW E Sbjct: 903 VLME-GCM---QLNVPLQVDIGTGMNWDE 927 >gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043] gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043] Length = 929 Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust. Identities = 371/989 (37%), Positives = 556/989 (56%), Gaps = 85/989 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G A+ G NML LL SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEATGAMYGVLNMLRSLLLQYHP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YKA+RP +PE L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFENYKAHRPPMPEDLREQIEPLHSMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G +V I + DKD+ QLV+P+ L +T+ + + V K+GIPPE ++ Sbjct: 121 LAVQAEKAGKSVLISTGDKDMAQLVTPSVTLINTMNNTILGPQEVCDKYGIPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GD+ DNIPG+PG+G KTA LLQ G L+++ N +I + K + ++ Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGLDSLYANLDKIAELSFRGAKTMAPKLEQHK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDA 296 E A LS +L ++TDV + + E L + + + L EF + ++ + + T+ Sbjct: 241 EVAYLSYQLATIKTDVELELSCEQLTVNELDVDELHRLFSRYEFKRWLSDIESGTWMQGK 300 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 + +PV T N + E D T+ Sbjct: 301 KSSQPV----QTVSNAVVEQAVEEDNAPTLSA---------------------------- 328 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 D Y I++ K + W+++L+ +F TD +D + I + Sbjct: 329 ---------DGYVTILDEKTLLDWIERLKQAEVFAFDTETDGLDTLTANLIGL------- 372 Query: 417 KDDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 SF + E ++ L+ H D+ + ++L+ K E+E LKIG N+K+DK Sbjct: 373 ----SFAIKPGEAAYLPLA-HDYLDAP-EQLDRAQVLALFKPLLEDEKLLKIGQNLKFDK 426 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 V+ RY I +RG D ML SYVLDS HD+ S+A+++L + T +EI K+ + Sbjct: 427 GVMQRYDIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLKHKTITFEEIAGKGKNQLT 486 Query: 530 IDKISDSQVQEHAIENSNVILQL----WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 ++I+ Q +A E+++V L L W L+P L V++ +D P++ V+S++E Sbjct: 487 FNQIALEQAGPYAAEDADVTLHLHQTLWGKLQPH---ADLCQVFQAIDMPLVPVLSRIER 543 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 TG+ ID +L + S E++ L LE Y+L+GE+FNL+S KQL IL+ K K P KT Sbjct: 544 TGVLIDPAILAEHSKELTTRLAGLETQAYELAGEEFNLASTKQLQGILYEKQKLPILKKT 603 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 G T + L ++ D P+ K ILE+R L+K+KSTY D LP IN T+RVHT Y Sbjct: 604 PKGAPSTNEEVLAELAL-DYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKRVHTSYHQ 662 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A T TGRL+S +PNLQNIP++ D G++IR+AFI+ +++ADYSQIELRI+AH++ Sbjct: 663 AVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIASKGYSIVAADYSQIELRIMAHLSGDK 722 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F N LDIHR A+E+FG+ ++KV+ + RR AK INF +IYG+S F L+ QL IPR Sbjct: 723 GLLNAFANGLDIHRATASEVFGIALDKVTSEQRRSAKAINFGLIYGMSAFGLSRQLNIPR 782 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 SE+ Y+ YF R+PG+ +Y+E+T+ ++GYV T+ GRR++ +I+S + R ER Sbjct: 783 SESQKYMNLYFERYPGVQDYMERTRQQAAEHGYVSTLDGRRLYLPDIHSRNAMARKGAER 842 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AAINAP+QG+AADI ++AMIS+ L+ KM++Q+HDELVFE+ + I + I Sbjct: 843 AAINAPMQGTAADIIKKAMISIDDWLQKDTPLVKMIMQVHDELVFEIHDSVIEESISKIK 902 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME C+ L VPL+V+I NW + Sbjct: 903 ILME-GCM---QLNVPLQVDIGTGMNWDQ 927 >gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13] gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13] Length = 933 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 375/984 (38%), Positives = 552/984 (56%), Gaps = 71/984 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYQP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G AV I + DKD+ QLV+P L +T+ + + V K+GIPP ++ Sbjct: 121 LALEAEKAGHAVLISTGDKDMAQLVTPNVTLINTMNNTILGPQEVCDKYGIPPALIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + N I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALYANLDNIATLNFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS KL ++TDV + + L + + L K EF + + A Sbjct: 241 EVAYLSYKLATIKTDVELDLSCAELEVSPLDVDALQQLFKQYEFKRWL-----------A 289 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++E I KG ++ + S+ + + T K+ +E T Sbjct: 290 DVEA---GIWLEGKKGSGVK-------AVSASKPAGVVADTPKVAAEAT----------- 328 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ + Y I++ K W++KL+ +F TD +D + I ++ + + Sbjct: 329 -----LSQEGYVTILDEKTFADWLKKLKNAEVFAFDTETDGLDTLTANLIGLSFA-VAPG 382 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D + +L LK E+E LK+G N+K+D +L Sbjct: 383 EAAYLPVAHDYLDAPAQLDR---------AYVLETLKPLLEDEKALKVGQNLKFDMGLLA 433 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RY I++RG D ML SYVLDS HD+ S++ ++L + T +EI K + ++I Sbjct: 434 RYDITLRGIAFDTMLESYVLDSVGGRHDMDSLSDRYLGHKTVTFEEIAGKGKKQLTFNQI 493 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V LQL L + P+L +LL V+ ++ P++ V+S +E TG+ IDQ Sbjct: 494 ALEQAAPYAAEDADVTLQLHLAMWPQLKESAELLTVFNEIEMPLVPVLSHIERTGVLIDQ 553 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++K L LE ++L+ E FNL+S KQL IL+ K K P KT G T Sbjct: 554 SILATHSIELTKRLAELEIQAHELAEEPFNLASTKQLQAILYEKQKLPVLKKTPGGAPST 613 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L ++ D P+ K ILE+R L+K+K+TY D LP IN + RVHT Y A T TGR Sbjct: 614 NEEVLAELAL-DYPLPKVILEYRGLAKLKTTYTDKLPLMINPFSGRVHTSYHQAVTATGR 672 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AFI+P ++++ADYSQIELRI+AH+++ L + F Sbjct: 673 LSSSDPNLQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHLSQDEGLLKAFA 732 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FGV ++KV+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 733 EGKDIHRATAAEVFGVQLDKVTGEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYM 792 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ + GYV T+ GRR++ +++S R ERAAINAP+ Sbjct: 793 DLYFERYPGVLEYMERTRQQAAEQGYVSTLDGRRLYLPDVSSSNGMRRKAAERAAINAPM 852 Query: 893 QGSAADITRRAMISVHKSL--EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 QG+AADI +RAMI V L +D L +M++Q+HDELVFE+ E I +SQ I ME Sbjct: 853 QGTAADIIKRAMIEVDAWLQGQDEPL-VRMIMQVHDELVFEIHESVIEASSQRIRELMEN 911 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 + + L VPLKV++ V NW E Sbjct: 912 S----MTLAVPLKVDVGVGANWDE 931 >gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99] gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99] Length = 929 Score = 627 bits (1616), Expect = e-177, Method: Compositional matrix adjust. Identities = 369/983 (37%), Positives = 550/983 (55%), Gaps = 73/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYKP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + I G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEEYKSHRPPMPDELRAQIEPLHKMVKAMGLPLLAISGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G AV I + DKD+ QLV+P L +T+ + + V++K+GIPP M+ Sbjct: 121 LALEAEKAGQAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+ G+G KTA LLQ G +++I N ++ K + + Sbjct: 181 ALMGDSSDNIPGVAGVGEKTAQALLQGLGGVKDIYANLDKVATLTFRGAKTMAAKLEKNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + + L +++ L++ K EF + I + Sbjct: 241 EMALLSYQLATIKTDVELELTSDQLTVKEPAVEELLALFKHYEFKRWITDLEEGKWLQGN 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 P + + +++ A+E S SS Sbjct: 301 KGNPSMKKVAAVQDEPAAVEA---------ASVLSS------------------------ 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 D Y I++ + W+ KL+ +F + TD++D + I ++ +T Sbjct: 328 --------DGYVTILDEETFASWLNKLQNSELFAFDLETDSLDTLSANIIGLSFATAPGV 379 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D ++ ++L+ LK EN LK+G N+K+D+ VL Sbjct: 380 A-AYLPVAHDYLDAPAQLDRN---------DVLARLKPLLENPQALKVGQNLKFDRGVLK 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 Y I ++G D ML SY L+S HD+ ++A +WL++ T +EI K + ++I Sbjct: 430 SYDIELQGIRFDTMLESYALNSVIGRHDMDTLALRWLNHKTVTFEEIAGKGKKQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V LQL L + P L E+ +V+E+L+ P++ V+S++E G+ IDQ Sbjct: 490 ALEQAGHYAAEDADVTLQLHLKMWPALEKEQGPKNVFEQLEMPLVPVMSRIERNGVLIDQ 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E+ L LE+ ++L+GE FNLSSPKQL ILF K KT G T Sbjct: 550 GILATHSQELGSRLAELEQKAHELAGEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + L ++ D P+ K ILE R LSK+KSTY D LP IN + RVHT Y T TGR Sbjct: 610 SEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AFI+PP ++++ADYSQIELRI+AH+++ L F Sbjct: 669 LSSSDPNLQNIPVRNDEGRRIRQAFIAPPGYRIVAADYSQIELRIMAHLSQDKGLLSAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIHR AAE+FGV+++KVS + RR AK INF +IYG+S F L+ QL I EA Y+ Sbjct: 729 SEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSSFGLSRQLNIGAGEAKKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ +Y+E T+ + GYV T+ GRR++ +IN+ + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLQYMESTRELAAEKGYVSTLDGRRLYLPDINASNAIRRKAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAMI+V LE KM++Q+HDELVFEV + + AS I ME + Sbjct: 849 QGTAADIIKRAMIAVDGWLEQQTSPDVKMIMQVHDELVFEVRADAVEAASAQIRALMEGS 908 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPL+V+I V +NW + Sbjct: 909 ----MALDVPLRVDIGVGDNWDQ 927 >gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96] gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96] Length = 930 Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust. Identities = 367/976 (37%), Positives = 558/976 (57%), Gaps = 77/976 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSSF++RA++A P L+ +G P NAI G NML KL+ + + I V+FD Sbjct: 22 LILVDGSSFLFRAYHAIPPLTNA-NGEPTNAIYGVSNMLRKLIADYHSDYIT----VVFD 76 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFRNE+Y YKA+RP +P+ L Q+ + +A G+P I G EADD++ Sbjct: 77 APGKTFRNELYDQYKAHRPPMPDDLRVQIAPLHNLIRAMGLPLIIESGVEADDVLGVLAQ 136 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE++G+ V I + DKD+ QLV+ L +T+ ++DI+ VI K+G+ PE+++ AL Sbjct: 137 HAEQQGYDVIISTGDKDMAQLVTEHIILENTMSNTRMDIQGVIDKFGVRPEQIIDYLALI 196 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DNIPG+P +G KTAA L++Y LEN++ +A +I K EN+ + LS++L Sbjct: 197 GDTVDNIPGVPKVGPKTAAKWLEQYSTLENLIAHADKIT-GKIGENLRASLDQLPLSKQL 255 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 ++ D+ + +E L + + L L L F+ + + Sbjct: 256 TTIKCDLDLPYNMEDLKQQPMDKAELRILLAELGFSSWLKSL------------------ 297 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 D + + S SS + S I + QT K P D Sbjct: 298 ----------------DASTELSTGSSSTPALSPIEAAQTEDK------------PAKID 329 Query: 367 S-YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 S Y ++ + W+ +LE +F T ++D ++ + ++ + K Sbjct: 330 SSYETVLTEQHFDDWLARLEKAELFAFDTETTSLDYSKAQIVGVSFAVTPGK-------- 381 Query: 426 TIFIDLSVHTSQDSTG-KNTLTK-EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 ++ L+ D G + L + EIL L+ EN K+G N+KYD VL +GI++ Sbjct: 382 AAYVPLA----HDYPGVPDQLDRSEILEKLRPLLENPRKAKLGQNLKYDTHVLANHGIAL 437 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 RG D ML SYVL+S + H++ +A+++L +++ I ++S Q Sbjct: 438 RGIAHDTMLESYVLNSTATKHNMDDLAKEYLGVETIHYEDVAGKGAKQIGFQEVSIDQAA 497 Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +A E++++ LQL +L KL +LL +Y ++ P+I V++++E G+ ID +L Q Sbjct: 498 PYAAEDADITLQLHQVLNAKLAQHPRLLELYSDMEVPLISVLARIENNGVLIDAAMLAQQ 557 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S E+S ++SLE++ +DL+G+ FNL SPKQ+ DIL+ + K P KT GQ T L+ Sbjct: 558 SLELSSQIISLEQHAHDLAGQTFNLGSPKQIQDILYDQQKLPVLKKTPKGQPSTEESVLQ 617 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ D P+ K ILE+R LSK+KSTY D LP I+ +T R+HT Y A TGRL+S +P Sbjct: 618 ELAL-DYPLPKLILEYRSLSKLKSTYTDKLPQQIDGQTGRIHTSYHQAIAATGRLSSSDP 676 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+++ G+KIR+AFI+P KK+++ADYSQIELRI+AH++ L + F D+H Sbjct: 677 NLQNIPIRSEEGRKIRQAFIAPEGKKIVAADYSQIELRIMAHLSADEGLLKAFSEEQDVH 736 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R AAE+FGV E+V+ +RR AK INF +IYG+S F LA QL + RS+A YI YF R Sbjct: 737 RATAAEVFGVAPEQVTTDLRRSAKAINFGLIYGMSSFGLAQQLGLSRSQAQSYIDLYFAR 796 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ Y+++ + R+ GY+ET+FGRR++ EINS ++ R ER AINAP+QG+AAD Sbjct: 797 YPGVKNYMDRIREQAREQGYIETLFGRRLYLPEINSRNAARRQYAERTAINAPMQGTAAD 856 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I +RAMI+ + L + KM++Q+HDELVFE+ EE + + I M A +L Sbjct: 857 IIKRAMIAADQWLYKEQPDAKMIMQVHDELVFEIAEEHVDDCAAKIRSIMCAAA----DL 912 Query: 959 RVPLKVNIKVSNNWQE 974 VPL V+I + NNW E Sbjct: 913 DVPLIVDIGIGNNWDE 928 >gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] Length = 933 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 362/976 (37%), Positives = 544/976 (55%), Gaps = 52/976 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P L+ G P A+ G NML L+ ++ A + D Sbjct: 4 LVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYVAFVVD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++Y DYKANRP +P+ L Q+ + A GI + I G EADD+I T Sbjct: 58 APGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLAL 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-EHVIKKWGIPPEKMVCLQAL 185 A +G +VTI + DKD QLV P L +T+ ++D E VI K+G+ P+++V L AL Sbjct: 118 QAAADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDEAVIAKFGVRPDQIVDLLAL 177 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GD++DN+PG+ G KTAA L EY +L+ ++ NA +IK K EN+ L+R+ Sbjct: 178 MGDTVDNVPGVDKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-ENLRAALPRLPLNRE 236 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LV ++TDV + L L + N L FT+ + + EP+ L Sbjct: 237 LVTIKTDVTLASGPRALDLREPNAETLAVLYARYGFTQALRELGGAATQAGLLTEPMALG 296 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 + TE R + + F S P +E LS Sbjct: 297 AAAASAR-----TEPGR---ARGTGFVS------------GPVSAPVEVDPALSA----P 332 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 Y I+ + + W+ +L G +F TD++D + I ++++ + ++ Sbjct: 333 GQYDTILTQEQLDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVAA--EPGQAAY--- 387 Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 L + ++ L+ L + K+G + KYD V+ R+GI++ G Sbjct: 388 -----LPFGHNFPGAPAQLERRQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGIALAG 442 Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEH 541 + +D +L S+VL+SG + HD+ S+A+++L Y +++ IP +IS + Sbjct: 443 YSDDTLLQSFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLDDATRY 502 Query: 542 AIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 A E++++ L+L +L PKL E L VY ++ P+++V++++E G+ +D L++ SA Sbjct: 503 AAEDADITLRLHHVLGPKLAAEPGLERVYREIEMPLVEVLARIEANGVCVDAAELRRQSA 562 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 ++SK +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T + LE I Sbjct: 563 DLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALEAI 622 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 + + + ILE+R L+K++STY D LP I+ ++ RVHT Y A TGRL+S +PNL Sbjct: 623 -ADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDPNL 681 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIPI+T+ G++IRRAF++P +KLI+ DYSQIELRI+AH++ L FE+ D+HR Sbjct: 682 QNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRA 741 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 AAE+FG I+ VS RR AK INF ++YG+S F LA QL I R EA DYI YF R+P Sbjct: 742 TAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRYP 801 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 G+ +++E T+ R GYVET+FGRR++ D IN+ R ERAAINAP+QG+AADI Sbjct: 802 GVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADII 861 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 +RAM+SV + DH M+LQ+HDELVFE + + T + M A LRV Sbjct: 862 KRAMVSVDAWIADHAEHALMILQVHDELVFEADADFVDTLLGEVTARMSAAA----ELRV 917 Query: 961 PLKVNIKVSNNWQEEN 976 PL V+ V +NW E + Sbjct: 918 PLVVDSGVGDNWDEAH 933 >gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004] gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus bovienii SS-2004] Length = 932 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 365/982 (37%), Positives = 567/982 (57%), Gaps = 68/982 (6%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + SH AV Sbjct: 6 DNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIIQYKP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIEPLHKMVEAMGLPILVVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEKEG +V I + DKD+ QLV+P L +T+ + E V +K+G+PPE ++ Sbjct: 121 LALQAEKEGRSVLISTGDKDMAQLVTPYITLINTMTNTILGPEGVSEKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G+L++I I K + ++ Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALGLLQGIGSLDDIYARLDEIATLSFRGAKTLSGKMAQHK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + L + + L++ EF + ++ V Sbjct: 241 EVAYLSYQLATIKTDVELDKTCLELAVTAPDSDELLALFSRYEFKRWLSDVQNGS----- 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 L+ N+ ++ T+ ++ +++S + +N Sbjct: 296 -----WLEGNSQKSAA-----------TVSAAKSATISSAPAAVN--------------- 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ ++Y I++ K + +W+ KL+ + SF TD +D + ++ + + Sbjct: 325 -----ISPENYQTILDRKSLDEWIVKLKQAPAFSFDTETDGLDTLTVNLVGMSFAIAVGE 379 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + VE ++ L H D+ + L E+L+ LK E+ + KIG N+K+D+ VL Sbjct: 380 SE----VEAAYLPLG-HDYLDAPEQLDL-HEVLAALKPLLEDANLPKIGQNLKFDRGVLA 433 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RY +++ G D ML SYVL+S HD+ S+A + L Y T +EI K + ++I Sbjct: 434 RYDVALNGIVFDTMLESYVLNSVSGRHDMDSLADRHLGYKTTTFEEIAGKGKKQLTFNQI 493 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + ++A E+++V L+L ++ P++ V L V++ ++ P++ V+S++E TG+ ID Sbjct: 494 PLEEAAKYAAEDADVTLRLHQVMYPQIDSVPTLKSVFQNIEMPLVPVLSRIERTGVLIDA 553 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L + S EI+ L LE+ Y+L+GE+FNL+SPKQL ILF KL P KT G T Sbjct: 554 QTLAEHSTEITARLGELEKAAYELAGEEFNLASPKQLQVILFEKLNLPVLKKTPNGAPST 613 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE++ ++ + + ILE R L+K+KSTY D LP +N T+RVHT Y A T TGR Sbjct: 614 NEEVLEEL-ADNHELPRVILEHRGLAKLKSTYTDKLPQMVNPLTKRVHTSYHQAVTATGR 672 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AFI+P +++ADYSQIELRI+AH+++ L + F Sbjct: 673 LSSRDPNLQNIPVRNDEGRRIRQAFIAPEGYCIMAADYSQIELRIMAHLSQDKGLLEAFA 732 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH AAE+FGV +E+V+ + RR AK INF +IYG+S F L+ QL IPR EA Y+ Sbjct: 733 QGKDIHSATAAEVFGVPLEEVTSEQRRSAKAINFGLIYGMSAFGLSRQLSIPRGEAQRYM 792 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ Y+E+T+ ++G+VET+ GRR++ +I S + R +ER AINAP+ Sbjct: 793 DLYFERYPGVLAYMERTRQQAAEHGFVETLEGRRLYLPDIKSRNAMRRKASEREAINAPM 852 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI + AMI+V + + +M++Q+HDELVFEV E E+ TA Q I MEK+ Sbjct: 853 QGTAADIIKLAMIAVDNWIVSEQPNVRMIMQVHDELVFEVHESELATAEQKISELMEKS- 911 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + L VPLKV++ + NW + Sbjct: 912 ---MQLDVPLKVDVGIGINWDQ 930 >gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 930 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 372/982 (37%), Positives = 556/982 (56%), Gaps = 70/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKMGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVAKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + + +I K + E Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLSFRGAKTMAGKLEENK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS KL ++TDV + + E L ++ + L+S K EF + V A Sbjct: 241 EVAYLSYKLATIKTDVELELGCEQLEVQQPSADDLLSLFKKYEFKRWTTDVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P T ID D DQ +E+ L E Sbjct: 301 GAKPAAKPKETIV---------IDAD------------DQ-----AEEEAAALSFEH--- 331 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I+ + W++KL+ +F TD++D + + ++ +T + Sbjct: 332 ----------YETILEETQLVAWIEKLKKAPVFAFDTETDSLDNITANMVGLSFAT-EPG 380 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ +L LK E+++ LK+G N+KYD+ +L Sbjct: 381 IAAYVPVAHDYLDAPEQLSRE---------RVLELLKPILEDDNALKVGQNLKYDRGILQ 431 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+LDS HD+ S++ +WL + T +EI K+ + ++I Sbjct: 432 NYGIELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 491 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + PKL E L+V++ ++ P++ V+S++E G++ID Sbjct: 492 ALEEAGRYAAEDADVTLQLHLKMWPKLQKHEGPLNVFQNIEMPLVPVLSRIERNGVKIDP 551 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E+++ L LE+ ++L+GE FNLSSPKQL ILF K KT G T Sbjct: 552 TVLHNHSGELAQRLTELEQKAHELAGEPFNLSSPKQLQTILFEKQGIKPLKKTPGGAPST 611 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A TGR Sbjct: 612 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVAATGR 670 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 671 LSSTDPNLQNIPVRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 730 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR E+ Y+ Sbjct: 731 EGKDIHRATAAEVFGLPLDSVTNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYM 790 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 791 DLYFERYPGVLEYMERTRAQAKEKGYVETLDGRRLYLPDIKSSNAARRAGAERAAINAPM 850 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V LE K KM++Q+HDELVFEV ++++ + S+ I ME + Sbjct: 851 QGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVFEVHKDDLDSVSKTIHELMENS- 909 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + L VPL V + NW + Sbjct: 910 ---MKLDVPLLVEVGSGENWDQ 928 >gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82] Length = 928 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 364/982 (37%), Positives = 555/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGCPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I KK + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKKMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] Length = 934 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 362/983 (36%), Positives = 560/983 (56%), Gaps = 68/983 (6%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNA-SGEPTGAMYGVLNMLRSLLLQYHP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G++V I + DKD+ QLV+P L +T+ + E V +K+G+PPE ++ Sbjct: 121 LAQEAEKAGYSVLISTGDKDMAQLVTPNITLINTMNNTILGPEEVREKFGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + N +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYSNLDKIASLTFRGAKTLSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++TDV + + LI+ + +L + EF + + + + Sbjct: 241 DVAYLSYQLATIKTDVELEVSCGELIVSTPDIDQLHTLFARYEFKRWLVDLEGGKWLEGN 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 P + + I + T T++ ++L Sbjct: 301 KARPTGTGKSDNKASDIVVAT--------PTAEVTAL----------------------- 329 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ ++Y I++ + W+++L+ +F TD +D + I ++ + + Sbjct: 330 -----LSQENYQTILDEETFLIWIERLKQAEVFAFDTETDGLDTLSANLIGLSFA-VAPG 383 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D + +L+ LK E+E LK+G N+K+DK +L Sbjct: 384 EAAYLPVAHDYLDAPAQLDRSW---------VLTTLKPLLEDEQALKVGQNLKFDKSLLA 434 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RYGI +RG D ML SYVL+S HD+ S+++++L++ T +EI K+ + ++I Sbjct: 435 RYGIELRGIAFDTMLESYVLNSVAGRHDMDSLSERYLNHKTITFEEIAGKGKNQLTFNQI 494 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V LQL L + PKL E LL V+++++ P++ ++S++E TG+ IDQ Sbjct: 495 ALEQASPYAAEDADVTLQLHLAMWPKLQESEDLLRVFQQIEMPLLPILSRIERTGVLIDQ 554 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G T Sbjct: 555 SILATHSQELTIRLTELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAAST 614 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L ++ D P+ K +LE+R L+K+KSTY D LP IN + RVHT Y A T TGR Sbjct: 615 NEEVLAELAL-DYPLPKVLLEYRGLAKLKSTYTDKLPLMINPISGRVHTSYHQAVTATGR 673 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P +++ADYSQIELRI+AH+++ L F Sbjct: 674 LSSRDPNLQNIPVRNEEGRRIRQAFIAPAGYCILAADYSQIELRIMAHLSQDKGLLAAFA 733 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 734 EGKDIHRATAAEVFGLPLENVTTEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYM 793 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ GYV T+ GRR++ +I+S ++ R ER AINAP+ Sbjct: 794 DLYFERYPGVLEYMERTRKQAADQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPM 853 Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAMI+V L+ + ++++Q+HDELVFEV E + +A+Q I ME++ Sbjct: 854 QGTAADIIKRAMIAVDAWLQQQAEPLVRVIMQVHDELVFEVHESVVESATQTICDLMEQS 913 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPLKV + V NW + Sbjct: 914 ----MQLDVPLKVEVGVGKNWDQ 932 >gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134] gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134] Length = 941 Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust. Identities = 367/984 (37%), Positives = 559/984 (56%), Gaps = 68/984 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R +GLP AI G NML KL R + A + A +FD Sbjct: 8 LLLVDGSSYLYRAYHALPDL-RNGEGLPTGAIYGMINMLRKL----RNDYPAEYSACVFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E+YP YK +RP +PE L Q+ + A +A G P + ++G EADD+I T Sbjct: 63 AKGKTFRDEMYPAYKEHRPSMPEDLARQIEPIHEAVRALGWPIVVVEGVEADDVIGTLAR 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G + + DKDL QLV+ L +T+ E +D V K+G+PPE++V +L Sbjct: 123 QAAEQGVRTVVSTGDKDLAQLVNDQVTLVNTMSGEVLDPAGVNAKFGVPPERIVDYLSLI 182 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEYAETARLSR 244 GD++DN+PG+P +G KTA L E+G L+NI+ A+ IK + N L++ AR Sbjct: 183 GDAVDNVPGVPKVGPKTAVKWLTEHGTLDNIMAGAAGIKGVVGENLRNTLDWLPKAR--- 239 Query: 245 KLVMLRTDVPITIPLEHL-----ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 +LV ++TD ++ + I ED +LI+F F + R AT A Sbjct: 240 ELVTVKTDCDLSAAVADFHALREIGEDKE--KLIAFFTRYGFKTWL-REATGESLPDARA 296 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 + G+ F + + +S + +E P + ++ Sbjct: 297 QARARAAAAPAQGGL----------------FDAPAATSSALAAETPPA-------EDMA 333 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 I Y + + W+Q++E+ + T ++D ++ + I++S Sbjct: 334 PSEIR---YELVTTEAAFEAWMQRIESAPLTAIDTETTSLDPMLAQLVGISLSVEPG--- 387 Query: 420 TSFKVETIFIDLSVHTSQDSTG---KNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLV 475 E +I + H D G L+++ +L+ ++ + E++ K+G NIKYD V Sbjct: 388 -----EACYIPVG-HRGPDVAGMENNGQLSRDTVLARMRAWLEDDSKPKLGQNIKYDIHV 441 Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPID 531 +G+++ G +D ML SYVL S R+ H + S+A++ L + T +E+ S I D Sbjct: 442 FANHGVTLCGVAQDTMLESYVLASHRN-HGMDSLAERLLNLKTITYEEVCGKGASQIGFD 500 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 +I ++ E+A E+++V L+L + P++ L VYE ++ P+ V+ ++E G+ I Sbjct: 501 QIDLARATEYAAEDADVTLRLHRKMFPQVSAAAGLRRVYEEIEIPVSVVLQKIERNGVLI 560 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D + L SAE+ + +LSLE+ YD +G+ FNL SPKQ+G+ILF ++K P KT +G Sbjct: 561 DAERLAAQSAELGQRMLSLEQAAYDAAGQPFNLGSPKQIGEILFNQMKLPVVKKTASGAP 620 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ K +L++R L+K+KSTY D LP +N T RVHT Y A+ +T Sbjct: 621 STDEEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPNTGRVHTSYGQATAVT 679 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRLAS EPNLQNIP++T+ G++IR AFI+ P ++SADYSQIELRI+AHI+ L + Sbjct: 680 GRLASTEPNLQNIPVRTEEGRRIREAFIASPGSVIVSADYSQIELRIMAHISGDENLLRA 739 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F N DIHR A+EIFGV+ E VS + RR+AK INF +IYG+S F LA+ L I R A Sbjct: 740 FANGEDIHRATASEIFGVDREAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIEREAAKH 799 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI RYF R+PG+ +Y+E T+ R+ GYVET+FGRR+ +IN R ERAAINA Sbjct: 800 YIDRYFMRYPGVAQYMEDTRQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAINA 859 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AAD+ + +MI+V LE KL T+ ++Q+HDELV EVP++E+ ++ + + Sbjct: 860 PMQGTAADLIKLSMIAVQGWLERDKLQTRQIMQVHDELVLEVPQDEL----DVVKTRLPE 915 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 LRVPL + NW+E Sbjct: 916 LMCSVAQLRVPLVAEVGSGANWEE 939 >gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424] gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus taiwanensis LMG 19424] Length = 939 Score = 622 bits (1604), Expect = e-176, Method: Compositional matrix adjust. Identities = 371/990 (37%), Positives = 564/990 (56%), Gaps = 82/990 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R +GLP AI G NML KL R + A + A +FD Sbjct: 8 LLLVDGSSYLYRAYHALPDL-RNGEGLPTGAIYGMINMLRKL----RNDYPAEYSACVFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++YP YK +RP +PE L Q+ + A +A G P + + G EADD+I T + Sbjct: 63 AKGKTFRDDLYPAYKEHRPSMPEDLARQIEPIHEAVRALGWPIVVVDGVEADDVIGTLSR 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G + + DKDL QLV+ L +T+ E +D V+ K+G+PPE+++ +L Sbjct: 123 QAMEQGVRTVVSTGDKDLAQLVNEHVTLVNTMSGEVLDPPGVLAKFGVPPERIIDYLSLI 182 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+P +G KTA L E+G+L+ ++ AS IK EN+ E ++R+L Sbjct: 183 GDAVDNVPGVPKVGPKTAVKWLAEHGSLDGVMAAASGIKGVV-GENLRNTLEWLPMARRL 241 Query: 247 VMLRTDVPITIPLE--HLILEDC-NGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 V ++TD ++ + H + E + +L++F + F + R AT A + Sbjct: 242 VTVKTDCDLSKSVADFHALRETGEDKEQLVAFFQRYGFKTWL-REATGESLPDARAQARA 300 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 + +G L D + + P P Sbjct: 301 RAATSAPAQG-------------------GLFDAPAPSAGDGAP--------------PA 327 Query: 364 NNDSYTKI----VNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 ++ + T+I V T ++ W++++E+ + T ++D ++ + I++S Sbjct: 328 DDAAPTEIRYETVTTPGMLEDWLRRIESAPLVAIDTETTSLDPMQAQLVGISLS------ 381 Query: 419 DTSFKVETIFIDLSVHTSQDSTG---KNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474 + E +I ++ H D G L++E +L ++ + E+ K+G N+KYD Sbjct: 382 --AAPGEACYIPVA-HRGPDVAGLPEHGQLSREFVLERMRAWLEDASRPKLGQNLKYDIH 438 Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V +GI +RG D ML SYVL S R +H + S+A++ LS T +E+ S I Sbjct: 439 VFANHGIKLRGVAHDTMLQSYVLASHR-NHGMDSLAERLLSLKTITYEEVCGKGASQIGF 497 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 D+I ++ E+A E+++V L+L + P++ L VYE ++ P+ V+ ++E G+ Sbjct: 498 DQIDLARATEYAAEDADVTLRLHRRMFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVL 557 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID + L SAE+ + +L+LE++ Y+ +G+ FNL SPKQ+G+ILF ++K P KT +G Sbjct: 558 IDAERLAAQSAELGQRMLALEQSAYEAAGQPFNLGSPKQIGEILFNQMKLPVVKKTASGA 617 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + L+++ D P+ K +L++R LSK+KSTY D LP +N RT RVHT Y A+ + Sbjct: 618 PSTDEEVLQKL-AEDYPLPKLLLDYRGLSKLKSTYTDKLPKMVNPRTGRVHTSYGQATAV 676 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRLAS EPNLQNIP++TD G++IR AFI+ P ++SADYSQIELRI+AHI+ L + Sbjct: 677 TGRLASTEPNLQNIPVRTDEGRRIREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLR 736 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F N DIHR AAEIFGV + VS + RR+AK INF +IYG+S F LA+ L I R A Sbjct: 737 AFANGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIERDAAR 796 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 YI RYF R+PG+ Y+E+T+ R+ GYVET+FGRR+ +IN R ERAAIN Sbjct: 797 HYIDRYFMRYPGVAHYMEETRQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAIN 856 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AAD+ + +MI+V LE L T+ ++Q+HDELV EVPE E+ + Sbjct: 857 APMQGTAADLIKLSMIAVQDWLERDGLQTRQIMQVHDELVLEVPEHEL---------ELV 907 Query: 950 KACLPKI-----NLRVPLKVNIKVSNNWQE 974 KA LP++ LRVPL + NW+E Sbjct: 908 KARLPELMCTVAELRVPLVAEVGSGANWEE 937 >gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39] gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI39] Length = 928 Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 556/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++P Q +S++D+ ++ + Sbjct: 301 GVKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + +++W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33] gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757] gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33] gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757] Length = 934 Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust. Identities = 367/985 (37%), Positives = 559/985 (56%), Gaps = 72/985 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NAI G NM+ ++ ++ + AV Sbjct: 6 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E+Y YKA+RP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 61 IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G LE + N +I K + + E Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A+LS +L ++ DV + + L+ + + L+S L F + + Sbjct: 241 GNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 LD T GI + D KTS S++ T+ ++ P+ Sbjct: 292 ------LDGGT----GI-----VTADEQTKTS---SVTVSTAATHAAAIPES-------- 325 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I+N +D Q W++KL+ +F TD +D + + ++ + + + Sbjct: 326 -PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 383 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D +D +++ LK E+E K+G N+KYD V+ Sbjct: 384 EAAYLPVAHDYLDAPQQLERDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 434 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYG+ +RG D ML SYV +S HD+ S+A ++L ++ +++ K+ + ++I Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590 + + ++A E+++V L+L + P ++E KL VY ++ P++ V+S++E TG+ I Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEMPLVPVLSRIERTGVMI 552 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D LL S EI+ L LE+N Y+L+G+ FNLSSPKQL ILF ++K P KT +G Sbjct: 553 DDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 612 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ K ++E+R L+K+KSTY D LP IN T RVHT Y A T T Sbjct: 613 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTAT 671 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP++ + G++IR+AF++P K+++ DYSQIELRI+AH++ L Sbjct: 672 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 731 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F + DIH AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA + Sbjct: 732 FRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 791 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ +YF R+PG+ +Y+E T++ Q GYVETIFGRR+H EI S + R ERAAINA Sbjct: 792 YMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINA 851 Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 P+QG+AADI ++AM+ V + +E + K+L+Q+HDELVFEV E ++ + ME Sbjct: 852 PMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLME 911 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL +NW++ Sbjct: 912 SAA----ELAVPLVAEAGHGDNWEQ 932 >gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395] gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27] gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395] gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395] gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27] Length = 934 Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust. Identities = 367/985 (37%), Positives = 559/985 (56%), Gaps = 72/985 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NAI G NM+ ++ ++ + AV Sbjct: 6 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E+Y YKA+RP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 61 IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G LE + N +I K + + E Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A+LS +L ++ DV + + L+ + + L+S L F + + Sbjct: 241 GNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLTFKSWLTEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 LD T GI + D KTS S++ T+ ++ P+ Sbjct: 292 ------LDGGT----GI-----VTADEQTKTS---SVTVSTAATHAAAIPES-------- 325 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I+N +D Q W++KL+ +F TD +D + + ++ + + + Sbjct: 326 -PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 383 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D +D +++ LK E+E K+G N+KYD V+ Sbjct: 384 EAAYLPVAHDYLDAPQQLERDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 434 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYG+ +RG D ML SYV +S HD+ S+A ++L ++ +++ K+ + ++I Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590 + + ++A E+++V L+L + P ++E KL VY ++ P++ V+S++E TG+ I Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEMPLVPVLSRIERTGVMI 552 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D LL S EI+ L LE+N Y+L+G+ FNLSSPKQL ILF ++K P KT +G Sbjct: 553 DDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 612 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ K ++E+R L+K+KSTY D LP IN T RVHT Y A T T Sbjct: 613 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTAT 671 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP++ + G++IR+AF++P K+++ DYSQIELRI+AH++ L Sbjct: 672 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 731 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F + DIH AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA + Sbjct: 732 FRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 791 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ +YF R+PG+ +Y+E T++ Q GYVETIFGRR+H EI S + R ERAAINA Sbjct: 792 YMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINA 851 Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 P+QG+AADI ++AM+ V + +E + K+L+Q+HDELVFEV E ++ + ME Sbjct: 852 PMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLME 911 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL +NW++ Sbjct: 912 SAA----ELAVPLVAEAGHGDNWEQ 932 >gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] Length = 916 Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust. Identities = 381/980 (38%), Positives = 560/980 (57%), Gaps = 78/980 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 ++N L LVDGSS+++RAF++ P L+ G AI G NML L+ K+ SH Sbjct: 5 QDNPLILVDGSSYLFRAFHSPPHLTNSR-GESTGAIYGVVNMLKSLV----KQFDPSHMV 59 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD TFRN++Y +YKANRP +P+ L Q+ + +A G+P I I+G EADD+I Sbjct: 60 VIFDAKGKTFRNDMYAEYKANRPPMPDELRGQIAPLHDIIRAMGLPLISIEGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T+ IA ++ V I + DKD+ QLV+ L +T+ + +D V +K+G+PPE ++ Sbjct: 120 TFARIATEQKRNVLISTGDKDMAQLVNEHVTLINTMTDTVLDPAGVTEKFGVPPELIIDY 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD +DNIPG+ G G KTA LQ+YG+L ++ NA+ IK K E + L Sbjct: 180 LALMGDKVDNIPGVDGCGPKTAVKWLQQYGSLSQVIENAAAIK-GKIGEKLQAAVPHLPL 238 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S +L ++ DV ++ L+ L ++ N LI EF + + A D A +P+ Sbjct: 239 SFELATIKLDVEVSDDLDQLTIQAPNKDELIKLYGHCEFRRWL---AELLDGAAPAPQPL 295 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 R+T +TS SE T P Sbjct: 296 T-----------------QRETNAQTS-------------SELTA--------------P 311 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + + Y I+ + + +W+ +L++ +F T ++D + + + SF Sbjct: 312 LIDVEYETILTEEQLDKWLAQLQSAPLFAFDTETTSLDYMQADLVGM-----------SF 360 Query: 423 KVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 VE + D G L+KE + + L +E K+G N+KYDK VL R G Sbjct: 361 AVEA-GKAAYLPIGHDYLGAPEQLSKEMVFAKLGPLLADEQRPKVGQNLKYDKSVLARAG 419 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536 + + G + D ML SYVL+S + HD+ S+A K+L + + +EI K+ + ++I Sbjct: 420 LELNGIKFDTMLESYVLNSVGTRHDMDSLALKYLGHKNISFEEIAGKGKNQLTFNQIELD 479 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + +A E++++ L+L +L PKL EKL V+E ++ P++ V+S +E TG++ID D+L Sbjct: 480 KAAPYAAEDADITLRLHQMLWPKLEADEKLKVVFETIELPLVSVLSDIERTGVEIDSDML 539 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 + S EI K L LE+ ++L+GE FNLSSPKQL ILF K + P KT G +TA+ Sbjct: 540 AKQSFEIGKRLDELEKEAHELAGEAFNLSSPKQLQVILFEKHELPVIKKTPKGA-PSTAE 598 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 ++ Q D P+ K I+E R LSK+KSTY D LP +N TQRVHT Y A T TGRL+S Sbjct: 599 EVLQELAHDYPLPKLIIEHRGLSKLKSTYTDKLPLMVNADTQRVHTSYHQAITATGRLSS 658 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIPI+T+ G+KIR+AF++ K+ +ADYSQIELRI+AH+++ L F L Sbjct: 659 TDPNLQNIPIRTEEGRKIRQAFVAAKGYKIAAADYSQIELRIMAHLSQDKGLLNAFAQGL 718 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+H AAE+FGV++ +V+ MRR AK +NF +IYG+S F LA QL +PR EA YI +Y Sbjct: 719 DVHSATAAEVFGVSVAEVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKY 778 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F RFPG+ EY+E T+ + GYVET+FGRR++ EIN+ + R ERAAINAP+QG+ Sbjct: 779 FERFPGVLEYMESTREKAAELGYVETLFGRRLYLPEINARNGASRKAAERAAINAPMQGT 838 Query: 896 AADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 AADI ++AMI+V+ ++ T ++L+Q+HDELVFE+ EE + Q I M +A Sbjct: 839 AADIIKKAMITVNAWVKAQPANTVRLLMQVHDELVFEIKEECVGDYMQHICLLMSQAA-- 896 Query: 955 KINLRVPLKVNIKVSNNWQE 974 L VPL V +NWQ+ Sbjct: 897 --ALDVPLIVESDSGDNWQQ 914 >gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026] gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli UMN026] gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] Length = 928 Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust. Identities = 364/982 (37%), Positives = 553/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK ENE LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLENEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5] gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5] Length = 928 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 364/982 (37%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKTWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK ENE LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLENEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 933 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 359/981 (36%), Positives = 542/981 (55%), Gaps = 62/981 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P L+ G P A+ G NML L+ ++ A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D P TFR+++Y DYKANRP +P+ L Q+ + A GI + I G EADD+I T Sbjct: 56 VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-EHVIKKWGIPPEKMVCLQ 183 A +G +VTI + DKD QLV P L +T+ ++D E VI K+G+ P+++V L Sbjct: 116 ALQAAADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDEAVIAKFGVRPDQIVDLL 175 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD++DN+PG+ G KTAA L EY +L+ ++ NA +IK K +N+ L+ Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 R+LV ++TDV + L L + N L FT+ + + T EPV Sbjct: 235 RELVTIKTDVTLASGPRALDLREPNTETLAVLYARYGFTQALREMGGTSAQAGLLSEPVA 294 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 L + E R T + ++ D +++ Sbjct: 295 LGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPALSAP------------------- 332 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD----- 418 Y I+ + + W+ +L G +F TD++D + I ++++ K Sbjct: 333 --GEYETILTQEQLDSWIVQLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPF 390 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 +F + +D + + L+ L + K+G + KYD V+ R Sbjct: 391 GHNFPGAPVQLDRT---------------QALAQLVPLLTDPAVRKLGQHGKYDLHVMRR 435 Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 +G+ + G+ D +L S+VL+SG + HD+ S+A+++L Y +++ IP +IS Sbjct: 436 HGVELAGYAHDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQIS 495 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 +A E++++ L+L +L PKL E L VY ++ P++DV++++E G+ +D Sbjct: 496 LEDATRYAAEDADITLRLHHVLGPKLAAEPGLERVYREIEMPLVDVLARIEANGVCVDAA 555 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L++ SA++SK +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T Sbjct: 556 ELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTN 615 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + LE I + + + ILE+R L+K++STY D LP I+ ++ RVHT Y A TGRL Sbjct: 616 EEALEAI-ADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRL 674 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIPI+T+ G++IRRAF++P +KLI+ DYSQIELRI+AH++ L FE+ Sbjct: 675 SSSDPNLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFES 734 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 D+HR AAE+FG I+ VS RR AK INF ++YG+S F LA QL I R EA DYI Sbjct: 735 GADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIA 794 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF R+PG+ +++E T+ R GYVET+FGRR++ D IN+ R ERAAINAP+Q Sbjct: 795 LYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQ 854 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI +RAM+SV + H KM+LQ+HDELVFE + + T + M A Sbjct: 855 GTAADIIKRAMVSVDGWIAGHAQRAKMILQVHDELVFEADTDFVDTLLSEVTTRMASAA- 913 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 LRVPL V+ + +NW E Sbjct: 914 ---ELRVPLVVDSGIGDNWDE 931 >gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10] gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10] Length = 934 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 367/985 (37%), Positives = 559/985 (56%), Gaps = 72/985 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NAI G NM+ ++ ++ + AV Sbjct: 6 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMI----RQFASDRMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E+Y YKA+RP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 61 IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G LE + N +I K + + E Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A+LS +L ++ DV + + L+ + + L+S L F + + Sbjct: 241 GNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 LD T GI + D KTS S++ T+ ++ P+ Sbjct: 292 ------LDGGT----GI-----VTADEQTKTS---SVTVSTAATHAAAIPES-------- 325 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I+N +D Q W++KL+ +F TD +D + + ++ + + + Sbjct: 326 -PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 383 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D +D +++ LK E+E K+G N+KYD V+ Sbjct: 384 EAAYLPVAHDYLDAPQQLERDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 434 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYG+ +RG D ML SYV +S HD+ S+A ++L ++ +++ K+ + ++I Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590 + + ++A E+++V L+L + P ++E KL VY ++ P++ V+S++E TG+ I Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEMPLVPVLSRIERTGVMI 552 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D LL S EI+ L LE+N Y+L+G+ FNLSSPKQL ILF ++K P KT +G Sbjct: 553 DDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 612 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ K ++E+R L+K+KSTY D LP IN T RVHT Y A T T Sbjct: 613 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTAT 671 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP++ + G++IR+AF++P K+++ DYSQIELRI+AH++ L Sbjct: 672 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 731 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F + DIH AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA + Sbjct: 732 FRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 791 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ +YF R+PG+ +Y+E T++ Q GYVETIFGRR+H EI S + R ERAAINA Sbjct: 792 YMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINA 851 Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 P+QG+AADI ++AM+ V + +E + K+L+Q+HDELVFEV E ++ + ME Sbjct: 852 PMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLME 911 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL +NW++ Sbjct: 912 SAA----ELAVPLVAEAGHGDNWEQ 932 >gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101] gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101] Length = 928 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 556/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + +++W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL +ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQNILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B] Length = 928 Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust. Identities = 364/982 (37%), Positives = 553/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E++NV LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDANVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514] gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514] Length = 947 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 365/984 (37%), Positives = 566/984 (57%), Gaps = 59/984 (5%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+DG + +YRA +A P+ + K G+ +A+ GF L ++++N + +HFAV Sbjct: 5 LFLLDGMALVYRAHFALVARPIFTSK--GVNTSALYGFTQTLLEIIKNQQ----PTHFAV 58 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A T R+ +P+YKA R ++PE L LP VR +AF IP I G+EADD+I T Sbjct: 59 AFDTAAPTARHVEFPEYKAQREEMPEDLSKALPHVRRMVEAFNIPLIICDGYEADDLIGT 118 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178 AEKEGF +++ DKD QLV T LY + E + + +++KWG+ PE+ Sbjct: 119 LVRKAEKEGFVSYMVTPDKDFGQLVDQNTFLYKPSRMGEGIEILGLPEILQKWGVQRPEQ 178 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ + L GD DNIPG+PGIG KTAA L+ +YG++EN+L + + +K K +EN+ + E Sbjct: 179 VIDVLGLWGDVSDNIPGVPGIGEKTAAKLIAQYGSVENLLAHTAELK-GKLKENLEAHRE 237 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAA 297 A LS++L + + P ++ LE L ++ CN L + EF + R+ Y Sbjct: 238 QALLSKRLATINCEAPCSVTLEGLEVKKCNEEALKNLFVEFEFNSIGRRLFGDDYKAGRG 297 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 E TT A + RD + T +F+ S+ +E+ P L+ + Sbjct: 298 FDE-------TTAQPQSAKKASAARDNQV-TEEFALFSETEEPNQAEEAPIASNLKTIND 349 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ Y I + + + +++L + + F T ++D ++ I +A + QK Sbjct: 350 VAH------DYRLITDGEGRSKLIKQLAGLKTFCFDTETTSLDTKEARLIGLAFAFEKQK 403 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 ++ + + +EIL + FENE K+GHN+KYD VL Sbjct: 404 G--------FYVAVPADPEE--------AREILQEFRAVFENEQIQKVGHNLKYDLAVLK 447 Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK----SRKSSIPIDKI 533 +G+ + G ++++ L H + +++ +L Y+ I K + + + + Sbjct: 448 WHGVGVHGKLFDTMLAHSLIEPEMRHGMDYMSEVYLGYSPISITKLIGDEKSKQLNMADV 507 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 ++V E+A E+++V QLW L P L + V+ ++ P+I V++ ME GI++D Sbjct: 508 PVAKVAEYAAEDADVTWQLWEKLEPLLKEKGQERVFYEVEAPLIPVLTAMEYEGIKVDAS 567 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKT 652 L + S ++SK + + E+ IY L+G++FNL+SP+QLG+ILF KLK AK TKTGQ+ T Sbjct: 568 ALAEFSTQLSKEMANHEQTIYRLAGQEFNLNSPRQLGEILFDKLKISENAKKTKTGQYAT 627 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 Q L + D+ I++ +L++R +K+KSTYAD+LP I K T RVHT ++ A T TGR Sbjct: 628 NEQTLMDL-AADHEIVQRLLDYRGATKLKSTYADALPGTIWKPTGRVHTTFNQAVTTTGR 686 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQV 770 L S PNLQNIPI+T+ G++IR+AF+ P + L+SADYSQIELRI+A ++ + + Sbjct: 687 LNSQNPNLQNIPIRTEQGKEIRKAFV-PRNEDYVLLSADYSQIELRIIAALSHEQGMLED 745 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F LDIH AA ++GV +++V+P+MRR AK +N+ I YGIS F LA +LRIPR EAA Sbjct: 746 FGRKLDIHTATAARVYGVPLDQVTPEMRRKAKMVNYGIAYGISAFGLAQRLRIPRKEAAT 805 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 I++YF ++PGI +Y+ T +F +Q+GYVET+ GRR + +I S +++R ER AINA Sbjct: 806 IIEQYFAQYPGIAKYMRDTIDFAKQHGYVETVTGRRRYMRDIRSANAAVRGGAERNAINA 865 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQG+AAD+ + AMI++H L KL ++MLLQ+HDELVF+V + E QI+ M Sbjct: 866 PIQGTAADMIKIAMINIHGELTKRKLKSRMLLQVHDELVFDVHQTEENEVRQIVEEKMRT 925 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A I L VP++V I W E Sbjct: 926 A----IQLEVPIEVEIGSGKTWLE 945 >gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4] Length = 934 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 366/985 (37%), Positives = 559/985 (56%), Gaps = 72/985 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NAI G NM+ ++ ++ + AV Sbjct: 6 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E+Y YKA+RP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 61 IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G LE + N +I K + + E Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A+LS +L ++ DV + + L+ + + L+S L F + + Sbjct: 241 DNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 LD T G+ + D KTS S++ T+ ++ P+ Sbjct: 292 ------LDGGT----GV-----VTADEQTKTS---SVTVSTAASHAAAIPES-------- 325 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I+N +D Q W++KL+ +F TD +D + + ++ + + + Sbjct: 326 -PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 383 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D +D +++ LK E+E K+G N+KYD V+ Sbjct: 384 EAAYLPVAHDYLDAPQQLDRDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 434 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYG+ +RG D ML SYV +S HD+ S+A ++L ++ +++ K+ + ++I Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590 + + ++A E+++V L+L + P ++E KL VY ++ P++ V+S++E TG+ I Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEMPLVPVLSRIERTGVMI 552 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D LL S EI+ L LE+N Y+L+G+ FNLSSPKQL ILF ++K P KT +G Sbjct: 553 DDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 612 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ K ++E+R L+K+KSTY D LP IN T RVHT Y A T T Sbjct: 613 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTAT 671 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP++ + G++IR+AF++P K+++ DYSQIELRI+AH++ L Sbjct: 672 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 731 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F + DIH AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA + Sbjct: 732 FRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 791 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ +YF R+PG+ +Y+E T++ Q GYVETIFGRR+H EI S + R ERAAINA Sbjct: 792 YMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINA 851 Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 P+QG+AADI ++AM+ V + +E + K+L+Q+HDELVFEV E ++ + ME Sbjct: 852 PMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLME 911 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL +NW + Sbjct: 912 SAA----ELAVPLVAEAGHGDNWDQ 932 >gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 934 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 358/977 (36%), Positives = 540/977 (55%), Gaps = 53/977 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P L+ G P A+ G NML L+ ++ A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D P TFR+++Y DYKANRP +P+ L Q+ + A GI + I G EADD+I T Sbjct: 56 VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183 +G AVTI + DKD QLV P L +T+ ++D + V+ K+G+ PE++V L Sbjct: 116 ALQGAADGLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVVAKFGVRPEQIVDLL 175 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD++DN+PG+ G KTAA L EY +L+ ++ NA +IK K +N+ L+ Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI-EPV 302 R LV ++TDV + L L + N L FT+ + + A + EPV Sbjct: 235 RALVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAAQAGLLAEPV 294 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 L + E R T + ++ D +++ Sbjct: 295 ALGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPSLSAP------------------ 333 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 Y I+ + W+ +L G +F TD++D + I ++++ + Sbjct: 334 ---GQYDTILTQEQFDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVAA-EPGQAAYL 389 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 F V + + L+ L + K+G + KYD V+ R+G+ Sbjct: 390 PFGHNFPGAPVQLDR---------TQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVE 440 Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538 + G+ ED +L S+VL+SG + HD+ S+A+++L Y +++ IP +IS Sbjct: 441 LAGYAEDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDA 500 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ L+L +L P+L E L VY ++ P++DV++++E G+ +D L++ Sbjct: 501 TRYAAEDADITLRLHRVLGPRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRR 560 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 SA++SK +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T + L Sbjct: 561 QSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEAL 620 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E I + + + ILE+R L+K++STY D LP I+ ++ RVHT Y A TGRL+S + Sbjct: 621 EAI-ADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSD 679 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++ L FE+ D+ Sbjct: 680 PNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADV 739 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG I+ VS RR AK INF ++YG+S F LA QL I R EA DYI YF Sbjct: 740 HRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFS 799 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ +++E T+ R GYVET+FGRR++ D IN+ R ERAAINAP+QG+AA Sbjct: 800 RYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAA 859 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI +RAM++V + DH KM+LQ+HDELVFE + + T + M A Sbjct: 860 DIIKRAMVNVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMAGAA----E 915 Query: 958 LRVPLKVNIKVSNNWQE 974 LRVPL V+ V +NW + Sbjct: 916 LRVPLVVDSGVGDNWDQ 932 >gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206] gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3] gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206] Length = 928 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 555/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + +++W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 933 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 357/983 (36%), Positives = 541/983 (55%), Gaps = 62/983 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P L+ G P A+ G NML L+ ++ A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D P TFR+ +Y DYKANRP +P+ L Q+ + A GI + I G EADD+I T Sbjct: 56 VDAPGKTFRDALYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183 A +G +VTI + DKD QLV P L +T+ ++D + VI K+G+ P+++V L Sbjct: 116 ALQAAADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLL 175 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD++DN+PG+ G KTAA L EY +L+ ++ NA +IK K +N+ L+ Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 R+LV ++TDV + L L + N L FT+ + + EPV Sbjct: 235 RELVTIKTDVTLASGPRALDLREPNTETLAVLYARYGFTQALRELGGASAQSGLLSEPVA 294 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 L + E R T + ++ D +++ Sbjct: 295 LGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPALSAPG------------------ 333 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD----- 418 +Y I+ + + W+ +L G +F TD++D + I ++++ K Sbjct: 334 ---AYETILTQEQLDSWIAQLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPF 390 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 +F + +D + L+ L + K+G + KYD V+ R Sbjct: 391 GHNFPGAPVQLDRT---------------HALAQLAPLLTDPAVRKVGQHGKYDLHVMRR 435 Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 +G+ + G+ +D +L S+VL+SG + HD+ S+A+++L Y +++ IP +IS Sbjct: 436 HGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQIS 495 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQD 593 +A E++++ L+L +L PKL E L VY ++ P++DV++++E G+ +D Sbjct: 496 LDDATRYAAEDADITLRLHHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAA 555 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L++ SA++SK +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T Sbjct: 556 ELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTN 615 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 LE I + + + ILE+R LSK++STY D LP I+ ++ RVHT Y A TGRL Sbjct: 616 EDALEAI-ADQHELPRVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRL 674 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++ L F + Sbjct: 675 SSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFAS 734 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 D+HR AAE+FG I+ VS RR AK INF ++YG+S F LA QL I R EA DYI Sbjct: 735 GTDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIA 794 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF R+PG+ +++E T+ R GYVET+FGRR++ D IN+ R ERAAINAP+Q Sbjct: 795 LYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQ 854 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI +RAM+ V + DH KM+LQ+HDELVFE + + T + M A Sbjct: 855 GTAADIIKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMASAA- 913 Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976 LRVPL V+ V ++W + + Sbjct: 914 ---ELRVPLVVDSGVGDDWDQAH 933 >gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS] gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS] Length = 928 Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 555/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T+RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTRRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 934 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 357/977 (36%), Positives = 541/977 (55%), Gaps = 53/977 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P L+ G P A+ G NML L+ ++ A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D P TFR+++Y DYKANRP +P+ L Q+ + A GI + I G EADD+I T Sbjct: 56 VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183 +G AVTI + DKD QLV P L +T+ ++D + V+ K+G+ PE++V L Sbjct: 116 ALQGAADGLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVVAKFGVRPEQIVDLL 175 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD++DN+PG+ G KTAA L EY +L+ ++ NA +IK K +N+ L+ Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI-EPV 302 R LV ++TDV + L L + N L FT+ + + A + EPV Sbjct: 235 RALVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAAQAGLLAEPV 294 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 L + E R T + ++ D +++ Sbjct: 295 ALGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPSLSAP------------------ 333 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 Y I+ + + W+ +L G +F TD++D + I ++++ + Sbjct: 334 ---GQYDTILTQEQLDNWIARLRAAGQFAFDTETDSLDPLQADLIGLSVAA-EPGQAAYL 389 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 F V + + L+ L + K+G + KYD V+ R+G+ Sbjct: 390 PFGHNFPGAPVQLDR---------TQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVE 440 Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538 + G+ +D +L S+VL+SG + HD+ S+A+++L Y +++ IP +IS Sbjct: 441 LAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDA 500 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ L+L +L P+L E L VY ++ P++DV++++E G+ +D L++ Sbjct: 501 TRYAAEDADITLRLHRVLGPRLTSEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRR 560 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 SA++SK +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T + L Sbjct: 561 QSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEAL 620 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E I + + + ILE+R L+K++STY D LP I+ ++ RVHT Y A TGRL+S + Sbjct: 621 EAI-ADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSD 679 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++ L FE+ D+ Sbjct: 680 PNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADV 739 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG I+ VS RR AK INF ++YG+S F LA QL I R EA DYI YF Sbjct: 740 HRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFS 799 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ +++E T+ R GYVET+FGRR++ D IN+ R ERAAINAP+QG+AA Sbjct: 800 RYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAA 859 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI +RAM++V + DH KM+LQ+HDELVFE + + T + M A Sbjct: 860 DIIKRAMVNVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMAGAA----E 915 Query: 958 LRVPLKVNIKVSNNWQE 974 LRVPL V+ V +NW + Sbjct: 916 LRVPLVVDSGVGDNWDQ 932 >gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185] gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185] Length = 928 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 367/986 (37%), Positives = 560/986 (56%), Gaps = 80/986 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + + Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGL-------- 371 Query: 418 DDTSFKVET---IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF +E+ +I ++ H D+ + +++E L LK E+E LK+G N+KYD+ Sbjct: 372 ---SFAIESGVAAYIPVA-HDYLDAP--DQISRERALELLKPLLEDEKALKVGQNLKYDR 425 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + Sbjct: 426 GILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 485 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGI 588 ++I+ + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G+ Sbjct: 486 FNQIALDEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGV 545 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +ID +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G Sbjct: 546 KIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGG 605 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T+ + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T Sbjct: 606 APSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 664 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L Sbjct: 665 ATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 724 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEA 784 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAI Sbjct: 785 QKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAI 844 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + Sbjct: 845 NAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQL 903 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 + C L VPL V + NW + Sbjct: 904 MENC---TRLDVPLLVEVGSGENWDQ 926 >gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] Length = 928 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYATEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536] gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11] gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536] gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11] gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2] gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1] Length = 928 Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 555/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + +++W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W] gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W] gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W] gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11] Length = 928 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 TLEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a] gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli ED1a] Length = 928 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 555/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + +++W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGRGENWDQ 926 >gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] Length = 928 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVTDEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263] Length = 928 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 555/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKXEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + +++W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGRGENWDQ 926 >gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167] Length = 928 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 367/986 (37%), Positives = 559/986 (56%), Gaps = 80/986 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + + Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGL-------- 371 Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF +E +I ++ H D+ + +++E L LK E+E LK+G N+KYD+ Sbjct: 372 ---SFAIELGVAAYIPVA-HDYLDAP--DQISRERALELLKPLLEDEKALKVGQNLKYDR 425 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + Sbjct: 426 GILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 485 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGI 588 ++I+ + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G+ Sbjct: 486 FNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGV 545 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +ID +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G Sbjct: 546 KIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGG 605 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T+ + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T Sbjct: 606 APSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 664 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L Sbjct: 665 ATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 724 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEA 784 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAI Sbjct: 785 QKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAI 844 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + Sbjct: 845 NAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQL 903 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 + C L VPL V + NW + Sbjct: 904 MENC---TRLDVPLLVEVGSGENWDQ 926 >gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605] gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86] gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605] Length = 928 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227] gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227] Length = 928 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLQQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNPLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] Length = 934 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 375/984 (38%), Positives = 552/984 (56%), Gaps = 70/984 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIM----QYTPSHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + A G+P + I G EADD+I T Sbjct: 61 VFDAKGKTFRDELFESYKSHRPPMPDDLRAQIEPLHEMVAAMGLPLLVIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +G V I + DKD+ QLV P L +T+ + E V K+G+PP ++ Sbjct: 121 LAREASSKGMPVLISTGDKDMAQLVEPNITLINTMTNTILGPEEVEAKYGVPPSLIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G+LE+I N I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALALLQGIGSLEDIYKNLEAIAPLGFRGSKTLAPKMEDNR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + P E L + + + +L + EF + + A Sbjct: 241 ELAFLSYQLATIKTDVELDKPCEELKVAELDADKLHALFSRYEFKRWL-----------A 289 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++E N T G + S+ + ++ + Q K K Sbjct: 290 DVE------NGTWMDGKGAK--------------SAKAAESYRAPESQPAAK------AK 323 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + ++ ++Y I++ + +WV+KL +F TD++D ++ + ++ + ++ Sbjct: 324 PAVPTLSAENYETILDKAQLDRWVKKLSESTLFAFDTETDSLDTQEARLVGMSFA-IEAG 382 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S D E+++ +K ENE KIG N+KYD VL Sbjct: 383 RAAYLPVGHDYLDAPAQLSLD---------EVIAVMKPILENEKIGKIGQNLKYDAEVLL 433 Query: 478 RYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531 Y I ++G D ML SYVL+S G HD+ S+A + L++ + +EI K + + Sbjct: 434 NYDIELKGIAFDTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEIAGKGKKQLTFN 493 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590 +I Q +A E+++V L L L P+L E KL HV++ ++ P++ V+ +ME G+ I Sbjct: 494 QIPLEQAANYAAEDADVTLLLHQALYPQLESEPKLAHVFQNIEMPLVPVLVRMERKGVLI 553 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D +L S I+ L LE+ +DL+GE+FNL+SPKQL ILF KL+ P KT +G Sbjct: 554 DAAVLTAQSQVITARLAELEKQAFDLAGEEFNLASPKQLQTILFEKLQLPVIKKTPSGAA 613 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + LE++ ++ + K +LE R L+K+KSTY D LP IN RTQRVHT Y A T T Sbjct: 614 STNEEVLEELAL-NHALPKLLLEHRSLAKLKSTYTDKLPLMINPRTQRVHTSYHQAVTAT 672 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP++T+ G++IR+AF++ K+++ADYSQIELRI+AH+++ L Sbjct: 673 GRLSSRDPNLQNIPVRTEEGRRIRQAFVARDGYKVMAADYSQIELRIMAHLSQDKGLLTA 732 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F DIHR AAE+FGV +E+V+ RR AK INF +IYG+S F LA QL IPR EA Sbjct: 733 FAQGKDIHRATAAEVFGVPLEEVTSDQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQR 792 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ YF R+PG+ Y+E T+ + GYVET+ GRR++ +I S R ER AINA Sbjct: 793 YMDLYFERYPGVLRYMENTRLQASERGYVETLEGRRLYLADIKSSNGMRRKAAEREAINA 852 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AADI ++AMI+V LE K + ML+Q+HDELVFEV E E+ + ME+ Sbjct: 853 PMQGTAADIIKKAMIAVDNWLETEKPSADMLMQVHDELVFEVKESELEKVQAKVQELMEQ 912 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 + + L VPLKV + V +NW E Sbjct: 913 S----MTLDVPLKVEVGVGSNWDE 932 >gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] Length = 933 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 372/984 (37%), Positives = 549/984 (55%), Gaps = 71/984 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYQP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFR+E++ +YK++RP +P+ L Q+ PL R+ +A G+P + G EADD+I Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHRM-VKAMGLPLLVTPGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T AEK G AV I + DKD+ QLV+P L +T+ + + V K+G+PPE ++ Sbjct: 120 TLAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNTILGPQEVCDKYGVPPELIIDF 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GDS DNIPG+PG+G KTA LLQ G L+ + N I K + + Sbjct: 180 LALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYGNLDGIAALSFRGAKTMAAKLEQN 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E A LS +L ++TDV + I L + + + +L K EF + + Sbjct: 240 KEVAYLSYQLATIKTDVELEITCADLTVAEQDADQLQQLFKHYEFKRWL----------- 288 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 A++E N N +K+ + P + E + Sbjct: 289 ADVEAGTWLQNKKGNG--------------------------AKVANGPKPSSVTAETPK 322 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 +++ ++ + Y I+ +W+++L+ +F TD +D + I ++ + ++ Sbjct: 323 AVAEAKLSQEGYVTILEESTFVEWLERLKKADVFAFDTETDGLDTLTANLIGLSFA-IEP 381 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 V ++D V + +L LK E+E LK+G N+K+DK +L Sbjct: 382 GVAAYLPVAHDYLDAPVQLDR---------AYVLETLKPLLEDEKALKVGQNLKFDKSLL 432 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 RY I +RG D ML SYVLDS HD+ S++ ++L + T +EI K+ + ++ Sbjct: 433 ARYDIDLRGIAYDTMLESYVLDSVSGRHDMDSLSDRYLDHKTITFEEIAGKGKNQLTFNQ 492 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQID 591 I+ Q +A E+++V LQL L + PKL L V+ ++ P++ V+S +E TG+ ID Sbjct: 493 IALEQAAPYAAEDADVTLQLHLAMWPKLKESTGQLKVFNEIEMPLLPVLSHIERTGVLID 552 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 Q +L S E+SK L LE ++L+ E FNL+S KQL IL+ K K P KT G Sbjct: 553 QHILAAHSKELSKRLGELEIQAHELAEEPFNLASTKQLQAILYEKQKLPVLKKTPGGAPS 612 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L ++ D P+ K ILE+R L+K+K+TY D LP IN + RVHT Y A T TG Sbjct: 613 TNEEVLAELAL-DYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSYHQAVTATG 671 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP++ D G++IR+AFI+P ++++ADYSQIELRI+AH+++ L F Sbjct: 672 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPAGYRIVAADYSQIELRIMAHLSQDRGLLNAF 731 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIHR A E+FG+ ++KV+ + RR AK INF +IYG+S F LA QL IPR EA Y Sbjct: 732 AAGKDIHRATAGEVFGLPLDKVTNEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRY 791 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF R+PG+ EY+E+T+ + GYV T+ GRR++ ++ S R ERAAINAP Sbjct: 792 MDLYFERYPGVLEYMERTRQQASEQGYVSTLDGRRLYLPDVRSSNGMRRKAAERAAINAP 851 Query: 892 IQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 +QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV E + A I ME Sbjct: 852 MQGTAADIIKRAMIAVDAWLQGQQQPLVRMIMQVHDELVFEVHESAMDDACLRIRSLMEG 911 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 + + L VPLKV+I V NW E Sbjct: 912 S----MELAVPLKVDIGVGKNWDE 931 >gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042] Length = 928 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPS 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 943 Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust. Identities = 369/990 (37%), Positives = 572/990 (57%), Gaps = 70/990 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 ++ L LVDGSS++YRAF+A P L R G P AI G NM+ + +R E A H A Sbjct: 3 KHRLLLVDGSSYLYRAFHAMPDL-RNGAGEPTGAIYGMVNMM----RRARSELKADHIAC 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E+Y +YKA+R +PE L+ Q+ + +A G P + + G EADD+I T Sbjct: 58 VFDAKGKTFRDEMYSEYKAHRSPMPEDLVKQIEPIHAMVKAMGWPVLMVSGVEADDVIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G+ I + DKDL QLV+P+ L +T+ EK+DIE VI+K+G+PPE +V Sbjct: 118 LACQATEAGWETIISTGDKDLAQLVNPSVTLINTMTNEKLDIEGVIEKFGVPPELIVDYL 177 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 ++ GD++DN+PG+P G KTA L E+GNL+N++ NA ++K EN+ + Sbjct: 178 SIIGDTVDNVPGVPKAGPKTANKWLAEFGNLDNLMANADQVK-GVVGENLRASLTWLPQA 236 Query: 244 RKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYD--CDAAN 298 R+L+ ++TD ++ +P L+ L + + L + F + V + D + Sbjct: 237 RQLITVKTDCDLSPHLPGLDDLHEKSEDAALLRELFERYAFKTWLRDVEKQLNNPSDGGS 296 Query: 299 IEPVVLDINTTENKGIAIET---EIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 V D+ + + ET E+ R I T+ L+ QTS + +ER Sbjct: 297 GAAVTFDLAGSPITNSSSETDSGELKR--VIATAPTKGLTQQTSDLQDA-------IER- 346 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 Y +V+ + +++W++K+E + T ++DA ++ + I++S Sbjct: 347 -----------HYECVVDEESLERWMKKIEAAELTAVDTETTSLDALAAELVGISLSVKP 395 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474 E +I ++ G+ L++E +L +K + E+ LK+G N+KYD Sbjct: 396 G--------EACYIPVA-----HRNGEAQLSRELVLKRMKSWLESSSHLKVGQNLKYDIH 442 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 + Y I + G D +L SYVL+S H++ S+A++ L +E+ I Sbjct: 443 IFANYDIHLEGIAFDTLLESYVLES-HLPHNMDSLAERHLGLKTIRYEEVCGKGVHQIGF 501 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589 D++ +A E++++ L+L L L P++ LL+VYE+++ P + V+ ME GI+ Sbjct: 502 DQVDLQIATNYAAEDADITLRLHLELWPQIQASPGLLYVYEKIEMPAMLVLGIMERNGIR 561 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID LL + ++ K LL LE I+ L+G+ FN+ SPKQ+ +ILF +L+ P KT +G Sbjct: 562 IDSALLAKQGQQVGKRLLELEGEIHRLAGQPFNIQSPKQIAEILFGQLELPIVKKTPSGA 621 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + L+++ D P+ IL++R L+K+ STY + LP + +T R+HT +S A+ + Sbjct: 622 PSTDEEVLQKL-AEDYPLPARILDYRSLAKLMSTYIEKLPRMADPKTGRIHTNFSQATAV 680 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRLAS +PNLQNIP++T+ G++IR AFI KL+SADYSQIELRI+AHIA+ L Sbjct: 681 TGRLASSDPNLQNIPVRTEEGRRIREAFIPADGCKLLSADYSQIELRIMAHIAEDENLLT 740 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F+ D+H+ AAEIFG+ ++ V+ + RR+AK INF +IYG+S F LA L I R+ A Sbjct: 741 AFKEGKDVHQATAAEIFGIPLDDVNSEQRRYAKVINFGLIYGMSAFGLAGNLGIERAAAQ 800 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 +YI +YF R+PG+ +Y+E+T+ R+NGYVET+FGRR+ EI R ERAAIN Sbjct: 801 NYIAKYFDRYPGVAQYMERTRLEARENGYVETVFGRRLWLPEIKGSNGPRRQGAERAAIN 860 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AAD+ + AMI+V LE +L TKMLLQ+HDELVF+VP +EI + Sbjct: 861 APMQGTAADLIKLAMIAVEDWLEKEQLKTKMLLQVHDELVFDVPLDEI---------DLL 911 Query: 950 KACLPKI-----NLRVPLKVNIKVSNNWQE 974 +A LP + L+VPL V+I + +NW+E Sbjct: 912 QAKLPDLMCHVAQLKVPLVVSIGIGDNWEE 941 >gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15] Length = 928 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046] gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K-12 substr. W3110] gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A] gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638] gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A] gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22] gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019] gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171] gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1] gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11] gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1] gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989] gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952] gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606] gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9] gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B] gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088] gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736] gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|332282738|ref|ZP_08395151.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Shigella sp. D9] gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli] gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli] gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655] gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046] gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K12 substr. W3110] gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A] gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638] gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A] gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22] gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019] gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171] gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1] gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11] gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli 55989] gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI1] gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952] gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Escherichia coli BL21(DE3)] gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606] gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)] gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1] gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088] gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1] gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112] gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010] gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68] gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1] gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482] gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489] gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007] gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3] gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Shigella sp. D9] Length = 928 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89] gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1] gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88] gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89] gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1] gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli S88] gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034] gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146] gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3] gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252] Length = 928 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 555/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKTGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + +++W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGRGENWDQ 926 >gi|332998506|gb|EGK18104.1| DNA polymerase I [Shigella flexneri K-272] Length = 928 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 362/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S + L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ER AINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERTAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83] Length = 928 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNPLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933] gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000] gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966] gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933] gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli] gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli] gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli] gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli] gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli] gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407] gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212] gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89] gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905] gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61] gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520] gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044] gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125] gi|332345852|gb|AEE59186.1| DNA polymerase I PolA [Escherichia coli UMNK88] Length = 928 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV +++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012] gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012] Length = 928 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAKLEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469] gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia fergusonii ATCC 35469] Length = 928 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972] gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972] gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972] gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1] Length = 928 Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82] gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C] Length = 928 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGRGENWDQ 926 >gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253] Length = 928 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299] gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299] Length = 928 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 367/986 (37%), Positives = 559/986 (56%), Gaps = 80/986 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RLQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + + Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGL-------- 371 Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF +E +I ++ H D+ + +++E L LK E+E LK+G N+KYD+ Sbjct: 372 ---SFAIEPGVAAYIPVA-HDYLDAP--DQISRERALELLKPLLEDEKALKVGQNLKYDR 425 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + Sbjct: 426 GILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 485 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGI 588 ++I+ + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G+ Sbjct: 486 FNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGV 545 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +ID +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G Sbjct: 546 KIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQSIKPLKKTPGG 605 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T+ + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T Sbjct: 606 APSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 664 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L Sbjct: 665 ATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 724 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEA 784 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAI Sbjct: 785 QKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAI 844 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + Sbjct: 845 NAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQL 903 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 + C L VPL V + NW + Sbjct: 904 MENC---TRLDVPLLVEVGSGENWDQ 926 >gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354] gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354] Length = 928 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLELFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400] Length = 891 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 353/973 (36%), Positives = 535/973 (54%), Gaps = 94/973 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LFL+DGSS+IYRA++A LS G P NA+ GF ML K++ K+ AV+FD Sbjct: 6 LFLIDGSSYIYRAYFAIRHLSSPA-GFPTNALYGFTQMLLKVI----KDHHPGRLAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR EIYPDYKANR +P+ L+PQ+ ++ +AF IP +E++G+EADDII T Sbjct: 61 KGRTTFRTEIYPDYKANRAAMPDDLVPQIGPIKEMVRAFSIPVLELEGYEADDIIGTIAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 E++G +++ DKDLMQ+VS L DT+K+ I V++++G+ P +++ + L Sbjct: 121 RCEEQGLEAVVVTGDKDLMQIVSDRIRLLDTMKDRVSGIPEVVERFGVGPGQVIDILGLA 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPG+PGIG KTA L+QE+G+L+ +L A +K K E + E+AE ARLSR+L Sbjct: 181 GDTSDNIPGVPGIGEKTATKLIQEFGSLDALLERAGEVKGKTG-ERLREFAEQARLSRRL 239 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + DVP+ +D DA + P Sbjct: 240 ATIVRDVPLD-----------------------------------FDLDAFAVAP----- 259 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 +N+ +A K F++L ++ SE T + + Sbjct: 260 --ADNRRLA--------ELFKEYGFTTL---MKELTSEAT----------------LTTE 290 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I D + + L G S + T +++ + + I++S D E Sbjct: 291 HYRTIFAEADFRALLADLAGAGVFSVDLETTSLNPLEADIVGISLSFRDH--------EA 342 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 +I V + D +L L+ + K+G N+KYD VL R+GI M G Sbjct: 343 CYI--PVGHAYDGAPAQLDRTLVLEGLRPLLTDPAVRKVGQNLKYDYQVLRRHGIVMAGV 400 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 + D M+ SY+++ RS H + S+A + L + + +E+ K + ++ + ++ Sbjct: 401 WCDTMVASYLINPVRSGHGLDSLAVEHLDHRMISYEEVAGKGKDQLNFARVPVEKASTYS 460 Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E+++ L L P++ + ++ L+ P++ ++++ME G+++D LL ++SA + Sbjct: 461 CEDADAAWLLHRLFLPRVAEAGMERLFFDLEMPLVPILAEMETAGVKLDLALLGELSAGL 520 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT-GQWKTTAQDLEQIN 661 L +LEE + L+ E FNL+SPKQLG++LF K+K P+G KTKT W T ++LE++ Sbjct: 521 GSQLTALEEQVMALAPEPFNLNSPKQLGEVLFEKMKLPAGKKTKTKTGWSTNVEELERLA 580 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 + I IL +R L+K+KSTY D+LP ++ + RVHT Y+ T TGRL+S EPNLQ Sbjct: 581 EAGHEIAAAILRYRGLAKLKSTYTDALPRLVHPASGRVHTSYNQTVTNTGRLSSSEPNLQ 640 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++TD G+KIRRAFI+ ++SADYSQIELR+LAH+++ F DIH Sbjct: 641 NIPVRTDEGRKIRRAFIAEEGHLILSADYSQIELRVLAHLSEDRVFCDAFARDEDIHTRT 700 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FG+ E V+P+MRR AK INF +IYG F LA QL I A ++I YF R PG Sbjct: 701 AAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSLAKQLGITTKVAKEFIDNYFARHPG 760 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 +++ GYV T+ GRR+ +I S +IR +R A+N PIQGSAADI + Sbjct: 761 ARAFLDGCVAEAEARGYVTTLMGRRLPIPDIASSNGNIRAFAQRNAVNYPIQGSAADIIK 820 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AM+ V + + L +++++Q+HDELVFEVPE E T +++ H ME A LRVP Sbjct: 821 AAMVRVTERMRREGLTSRLIMQVHDELVFEVPEGERTAMERLVQHEMEHAA----PLRVP 876 Query: 962 LKVNIKVSNNWQE 974 L+ ++ V NW E Sbjct: 877 LRADVNVGRNWSE 889 >gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39] gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39] Length = 934 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 366/985 (37%), Positives = 558/985 (56%), Gaps = 72/985 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NAI G NM+ ++ ++ + AV Sbjct: 6 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E+Y YKA+RP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 61 IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G LE + N +I K + + E Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A+LS +L ++ DV + + L+ + + L+S L F + + Sbjct: 241 DNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 LD T G+ + D KTS S++ T+ ++ P+ Sbjct: 292 ------LDGGT----GV-----VTADEQTKTS---SVTVSTAASHAAAIPES-------- 325 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I+N +D Q W++KL+ +F TD +D + + ++ + + + Sbjct: 326 -PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 383 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D +D +++ LK E+E K+G N+KYD V+ Sbjct: 384 EAAYLPVAHDYLDAPQQLERDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 434 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYG+ +RG D ML SYV +S HD+ S+A ++L ++ +++ K+ + ++I Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590 + + ++A E+++V L+L + P ++E KL VY ++ P++ V+S++E TG+ I Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEMPLVPVLSRIERTGVMI 552 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D LL S EI+ L LE+N Y+L+G+ FNLSSPKQL ILF ++K P KT +G Sbjct: 553 DDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 612 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ K ++E+R L+K+KSTY D LP IN T RVHT Y A T T Sbjct: 613 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTAT 671 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP++ + G++IR+AF++P K+++ DYSQIELRI+AH++ L Sbjct: 672 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 731 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F + DIH AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA + Sbjct: 732 FRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 791 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ +YF R+PG+ +Y+E T++ Q GYVETIFGRR+H EI S R ERAAINA Sbjct: 792 YMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNVMRRKAAERAAINA 851 Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 P+QG+AADI ++AM+ V + +E + K+L+Q+HDELVFEV E ++ + ME Sbjct: 852 PMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLME 911 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL +NW + Sbjct: 912 SAA----ELAVPLVAEAGHGDNWDQ 932 >gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118] gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118] Length = 933 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 352/978 (35%), Positives = 541/978 (55%), Gaps = 52/978 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P L+ G P A+ G NML L+ ++ A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D P TFR+++Y DYKANRP +P+ L Q+ + A GI + I G EADD+I T Sbjct: 56 VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183 +G VTI + DKD QLV P L +T+ ++D + VI K+G+ P+++V L Sbjct: 116 ALQGAADGLQVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLL 175 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD++DN+PG+ G KTAA L EY +L+ ++ NA +IK K +N+ L+ Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 R+LV ++TDV + L L + N L FT+ + + EPV Sbjct: 235 RELVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAQAGLLAEPVA 294 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 L + E R T + ++ D +++ Sbjct: 295 LGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPSLSAP------------------- 332 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 Y I+ + + W+ +L G +F TD++D + I ++++ + Sbjct: 333 --GQYETILTQEQLDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVA--------AEP 382 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 + ++ H + L+ L + K+G + KYD V+ R+G+++ Sbjct: 383 GQAAYLPFGHHFP--GAPAQLDRTQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVAL 440 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 G+ +D +L S+VL+SG + HD+ S+A+++L Y +++ IP +IS Sbjct: 441 AGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDAT 500 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +A E++++ L+L +L P+L E L VY ++ P++DV++++E G+ +D L++ Sbjct: 501 RYAAEDADITLRLHRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQ 560 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 SA++SK +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T + LE Sbjct: 561 SADLSKRMLAAQQKATELAGRSFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALE 620 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 I + + + ILE+R L+K++STY D LP I+ ++ RVHT Y A TGRL+S +P Sbjct: 621 AI-ADQHELPRVILEYRGLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDP 679 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+T+ G++IRRAF++P +KLI+ DYSQIELRI+AH++ L FE+ D+H Sbjct: 680 NLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVH 739 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R AAE+FG I+ VS RR AK INF ++YG+S F LA QL I R EA DYI YF R Sbjct: 740 RATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSR 799 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ +++E T+ R GYVET+FGRR++ D IN+ R ERAAINAP+QG+AAD Sbjct: 800 YPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAAD 859 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I +RAM++V + +H KM+LQ+HDELVFE + + T + M A L Sbjct: 860 IIKRAMVNVDGWIANHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMAGAA----EL 915 Query: 959 RVPLKVNIKVSNNWQEEN 976 RVPL V+ V +NW + + Sbjct: 916 RVPLMVDSGVGDNWDQAH 933 >gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509] Length = 928 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADDAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1] Length = 928 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|332751661|gb|EGJ82060.1| DNA polymerase I [Shigella flexneri 4343-70] gi|332998620|gb|EGK18217.1| DNA polymerase I [Shigella flexneri K-218] Length = 928 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 366/982 (37%), Positives = 557/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + T D +A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRW------TADVEAG 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + KG T Q +S++D+ ++ + Sbjct: 295 KW---------LQAKGA---------KTAAKPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S + L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1] gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1] Length = 911 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 358/975 (36%), Positives = 549/975 (56%), Gaps = 78/975 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LFL+DGS ++YRAF+ L+R+ DG P NAI GF ML K++++ + + + + FD Sbjct: 6 LFLIDGSGYLYRAFFGVRNLTRR-DGFPTNAIFGFIKMLRKVIEDEKPDFVT----IAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ + YKANR +P+ L Q+P++ AF IP I ++G+EADDII T+ Sbjct: 61 TKAPTFRHTMDAQYKANRKPMPDELRVQIPVIHDVIDAFNIPRIALEGYEADDIIGTFAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + G V ++S DKDLMQL++P ++D K++ E V++ WG+ E++ L L Sbjct: 121 LGCAAGVEVVVVSGDKDLMQLITPQVKMFDGSKDKWYGPEDVVESWGVAAERIPDLLGLA 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPG+ GIG KTAA L+ E+G+LE +L A RIKQ KRR +LE A+TAR S +L Sbjct: 181 GDTSDNIPGVGGIGPKTAAQLIAEFGSLEGVLHGAERIKQPKRRTALLEQADTARRSLQL 240 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + +VP+ L+ ++ N RL + + F L Sbjct: 241 ATINREVPLPFDLQGARMQRPNWARLREIYQDMSFATL---------------------- 278 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSL-SDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 A E E Q +L S+ I E P+ L N Sbjct: 279 --------AREAE---------KQLQALGSEAAPSIQIETQPESL------------PNQ 309 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 +Y I + Q ++++L+ G F + T+T D + IS Q Sbjct: 310 PNYQVITSEAAFQAFMEQLK--GLPRFAVDTETTDLHPHSAELVGISIAWQP-------- 359 Query: 426 TIFIDLSVHTSQDSTGKNTLTK-EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 + + V + D+ + L + ++L+ LK E+ K G NIKYD + RY I+M+ Sbjct: 360 MVAYYIPVGHALDAAPEGQLPRADVLAALKPLLESPEIGKTGQNIKYDYQIFKRYHITMQ 419 Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQE 540 G E D ML SY+L +H++ +IA + L T +++ + I D++ Sbjct: 420 GIERDSMLYSYLLYGANRAHNLDAIATEELGRTTIKFEDVAGKGRKRIRFDQVPLHLAAP 479 Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++ V Q + P L E L +YE +++P+I V+++ME G+ +D+D+L +S Sbjct: 480 YACEDAEVTWQAAASMAPNLDREPGLKRLYETIERPLIPVLAEMEYAGVLVDRDVLSTMS 539 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 A+ SK L E I++L+GE FN++S +QLG ILF K+ G +TK+G + T L + Sbjct: 540 ADFSKRRARLVEEIHELAGEVFNVNSTQQLGHILFEKMGIKGGKRTKSG-FSTDVSVLSK 598 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + I + +L +R L+K++STY D+L I+ T RVHT Y+ A T+TGRL+S +PN Sbjct: 599 LADDGEKIPQQVLAYRSLTKLQSTYTDALVALIHPYTGRVHTSYNQAVTLTGRLSSSDPN 658 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPI+T+ G+ IR AFI+P L++ADYSQIELR+LAH+ ++ L + F LDIH Sbjct: 659 LQNIPIRTEEGRAIRTAFIAPAGWSLLAADYSQIELRVLAHMGNVSRLKEAFHAGLDIHA 718 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAE+FGV + +V+ + RR AKTINF ++YG+SPF LA +L I +EA Y+ YF R+ Sbjct: 719 ATAAELFGVPLAQVTGEHRRMAKTINFGLVYGMSPFGLAKRLGIQNNEARAYMDLYFARY 778 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 G+ ++++ T R +G+VET+ GRR +IN+ + S+R ER AINAP+QGSA+D+ Sbjct: 779 DGVRQHMDATIRDARAHGFVETLGGRRCPIRDINATQRSLREFAERTAINAPLQGSASDL 838 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + AMI +H +L+ +M+LQ+HDELV EVP++E+ +++ ME + L Sbjct: 839 IKLAMIRLHGALQAGGFKARMVLQVHDELVLEVPDKELAAVKEVVRSCMEGV----MTLS 894 Query: 960 VPLKVNIKVSNNWQE 974 +PL V++ V NW E Sbjct: 895 IPLVVDMGVGQNWGE 909 >gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143] gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143] Length = 928 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 362/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ +Y+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLQYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] Length = 927 Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust. Identities = 367/983 (37%), Positives = 554/983 (56%), Gaps = 75/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN + LVDGSS++YRA++A P L+ + G P A+ G NML LL R SH AV Sbjct: 6 ENPIILVDGSSYLYRAYHAFPPLTNRA-GEPTGAMYGVLNMLKSLLVQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRSQIAPLHDMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLVSP L +T+ + E V K+G+PPE ++ Sbjct: 121 LALAAARGGRDVLISTGDKDMAQLVSPKITLINTMSNTILGPEEVQLKFGVPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL-----INASRIKQKKRRENILE-YA 237 AL GDS DNIPG+PG+G KTA LLQ G LE++ +++ + K LE + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLESLYQQLDSVSSLSFRGAKTMAAKLEQHR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDVP+ +P + L +E+ L+ + EF + ++ D +A Sbjct: 241 EVAFLSYQLATIKTDVPLDLPYDRLTVEEPEAEALMLLFQRYEFKRWLS------DLEAG 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQ-FSSLSDQTSKINSEQTPQKLFLERLQ 356 + R + + S F++ ++ +E Sbjct: 295 KW--------------------LQRKSAVAPSPPFTAPRPAAAEEPTEA----------- 323 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 ++ D Y I ++ W+ + G +F TD +D + I + + + Sbjct: 324 ------LSKDGYVIIDTMATLEMWIGAIRHAGVFAFDTETDGLDTLTANLIGLCFA-VKP 376 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + V ++D + D + T +L+ LK E+ KIG N+K+D+ VL Sbjct: 377 GEAAYLPVGHDYLD-----APDQLDRAT----VLAALKPVMEDPTIGKIGQNLKFDRGVL 427 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 RY I + G D ML SYVLDS HD+ S+A+++L +T +EI ++ + ++ Sbjct: 428 KRYDIELAGIAFDTMLESYVLDSVAGRHDMDSLAERFLQHTTVSFEEIAGKGRNQLTFNQ 487 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 I+ Q +A E+++V L+L L P++ +L V+E ++ P++ V+S++E TG+ ID Sbjct: 488 IAMEQAASYAAEDADVTLRLHQKLWPRIEQAPELRRVFEEIEMPLVPVLSRIERTGVLID 547 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 + +L S E++K L LE + L+ E FNLSS KQL +IL+ K K P KT G Sbjct: 548 ESILAAHSVELAKRLEELEGEAHQLAEEPFNLSSTKQLQEILYDKQKLPVLKKTPGGAPS 607 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN ++RVHT Y A T TG Sbjct: 608 TNEEVLAELAL-DYPLPKLILEYRGLAKLKSTYTDKLPQMINPLSKRVHTSYHQAVTATG 666 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP++ D G++IR+AFI+PP +++ADYSQIELRI+AH+A+ L F Sbjct: 667 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPPDALIVAADYSQIELRIMAHLARDPGLLNAF 726 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIHR AAE+FG+++EKV+ RR AK INF +IYG+S F LA QL +PRSEA Y Sbjct: 727 AAGKDIHRATAAEVFGMSLEKVTQDQRRSAKAINFGLIYGMSAFGLARQLSVPRSEAQKY 786 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF R+PG+ EY+E+T+ GYVET+ GRR++ +I+S + ERAAINAP Sbjct: 787 MNLYFERYPGVLEYMERTRRQASDRGYVETLDGRRLYLLDIHSRNGMRKKGVERAAINAP 846 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG++ADI +RAMI++ L+ +M++Q+HDELVFEV + + +A I ME Sbjct: 847 MQGTSADIIKRAMIAIDGWLQQEAPPVRMIMQVHDELVFEVQRDAVESAKARIKALME-G 905 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 C L VPL+V++ V NW + Sbjct: 906 CF---KLDVPLQVDVGVGENWDQ 925 >gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 933 Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust. Identities = 352/976 (36%), Positives = 540/976 (55%), Gaps = 52/976 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P L+ G P A+ G NML L+ ++ A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYVAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D P TFR+++Y DYKANRP +PE L Q+ + A GI + I G EADD+I T Sbjct: 56 VDAPGKTFRDDLYADYKANRPPMPEDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183 +G VTI + DKD QLV P L +T+ ++D + VI K+G+ P+++V L Sbjct: 116 ALQGAADGLQVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLL 175 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD++DN+PG+ G KTAA L EY +L+ ++ NA +IK K +N+ L+ Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 R+LV ++TDV + L L + N L FT+ + + EPV Sbjct: 235 RELVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAQAGLLAEPVA 294 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 L + E R T + ++ D +++ Sbjct: 295 LGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPSLSAP------------------- 332 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 Y I+ + + W+ +L G +F TD++D + I ++++ + Sbjct: 333 --GQYETILTQEQLDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVA--------AEP 382 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 + ++ H + L+ L + K+G + KYD V+ R+G+++ Sbjct: 383 GQAAYLPFGHHFP--GAPAQLDRTQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVAL 440 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 G+ +D +L S+VL+SG + HD+ S+A+++L Y +++ IP +IS Sbjct: 441 AGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDAT 500 Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +A E++++ L+L +L P+L E L VY ++ P++DV++++E G+ +D L++ Sbjct: 501 RYAAEDADITLRLHRVLGPRLASEPDLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQ 560 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 SA++SK +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T + LE Sbjct: 561 SADLSKRMLAAQQKATELAGRSFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALE 620 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 I + + + ILE+R L+K++STY D LP ++ ++ RVHT Y A TGRL+S +P Sbjct: 621 AI-ADQHELPRVILEYRGLAKLRSTYTDKLPEMVHPQSGRVHTSYHQAGAATGRLSSSDP 679 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+T+ G++IRRAF++P +KLI+ DYSQIELRI+AH++ L FE+ D+H Sbjct: 680 NLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVH 739 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R AAE+FG I+ VS RR AK INF ++YG+S F LA QL I R EA DYI YF R Sbjct: 740 RATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSR 799 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ +++E T+ R GYVET+FGRR++ D IN+ R ERAAINAP+QG+AAD Sbjct: 800 YPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAAD 859 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I +RAM++V + +H KM+LQ+HDELVFE + + T + M A L Sbjct: 860 IIKRAMVNVDGWIANHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMAGAA----EL 915 Query: 959 RVPLKVNIKVSNNWQE 974 RVPL V+ V +NW + Sbjct: 916 RVPLVVDSGVGDNWDQ 931 >gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627] gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627] Length = 928 Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust. Identities = 362/982 (36%), Positives = 556/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +PV Q + ++D+ ++N+ Sbjct: 301 GAKPVA------------------------KPQETLVTDEAPEVNATT------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ ++ W+ +LE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEDTLKAWITRLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ +L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYVPVAHDYLDAPEQISRE---------RVLELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 Y I +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYDIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQKHKGPLNVFENIEMPLVPVISRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPQDHVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ K +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEKPRVRMIMQVHDELVFEVHKDDLDVVAKKI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1] gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1] Length = 920 Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust. Identities = 369/981 (37%), Positives = 543/981 (55%), Gaps = 82/981 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS++YRAF+A P L+ +G P AI G NML KL + + AVIFD Sbjct: 7 IVLVDGSSYLYRAFHAMPPLT-TSNGQPTGAIKGVLNMLRKLQADVKP----LRMAVIFD 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++I+P+YKA RP +P+ L Q+ + +A G+P I I G EADD+I TY Sbjct: 62 AKGKTFRDDIFPEYKAQRPPMPDDLRAQIEPLYDCIRALGLPLISISGVEADDVIGTYCV 121 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + G V + + DKD+ QLV+ L +T+ + +D + VI+K+G+PPE++V L Sbjct: 122 EASRLGERVLVSTGDKDIAQLVNEHVTLINTMNDTLLDRDGVIEKFGLPPEQIVDYLTLV 181 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DNIPG+P G KTA L +YG+L+N++ +A IK K EN+ E LSR+L Sbjct: 182 GDSVDNIPGVPKCGPKTALKWLDDYGSLDNLIAHADEIK-GKVGENLRASLEQIPLSRQL 240 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA--NIEPVVL 304 ++ DVP+ + L LE+ N +L+ + LEF ++ + + + A N V + Sbjct: 241 ATIKCDVPLAQGVMELQLENANTEKLVELYQQLEFKSWLHDLLGSNEAAGAHQNGASVSI 300 Query: 305 DINTTEN----KGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 T E+ G A E E D Sbjct: 301 ASPTAESIPTQDGFAFEPEND--------------------------------------- 321 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 Y I++ ++++WV +L + S F + T+T + + IS Q + Sbjct: 322 -------YHTILDAAELERWVVRL--LASDVFSVDTETTSLNYMDAELVGISFSLQAGEA 372 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 ++ + V + T + +L+ LK E E KIG N+KYD VL RYG Sbjct: 373 AY--------VPVGHTAIGTPEQLPLDYVLNALKPILEAETPAKIGQNLKYDMNVLARYG 424 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536 I++ G D ML SYVLD+ + HD+ S+A K+L + +++ I D++ Sbjct: 425 ITLSGVRFDTMLESYVLDAAATRHDMDSLALKYLGQKTIAFEDVAGKGAKQITFDQVPLL 484 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKPMIDVVSQMEITGIQIDQD 593 Q +A E+++V L+L L P+ V+K L V++ ++ P++ V+S+ME G +ID Sbjct: 485 QAATYAAEDADVTLKLHQALWPR--VQKTPTLTKVFQEIEMPLVGVLSRMEREGARIDVA 542 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 LKQ S ++ + + LE + L+G+ FNL+SPKQLG+IL+ +L+ P KT G T Sbjct: 543 ALKQQSRQLGERMAELEAEAHTLAGQPFNLASPKQLGEILYDQLQLPILKKTPKGAPSTD 602 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 L+ + D + K +LE+R +K+KSTY D LP +N RT R+HT Y A TGRL Sbjct: 603 ESVLQDL-AHDYELPKVLLEYRGCAKLKSTYTDKLPELVNPRTGRIHTSYHQAVASTGRL 661 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIPI+ + G+KIR+AFI+ P +++ADYSQIELRI+AH++ L F Sbjct: 662 SSSDPNLQNIPIRNESGRKIRQAFIAEPGFTMVAADYSQIELRIMAHLSDDESLIDAFAR 721 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 LDIHR AAE+ GV +E V+ MRR AK +NF +IYG+S F LA QL I R +A Y+ Sbjct: 722 GLDIHRATAAEVMGVPLEDVTSDMRRSAKAVNFGLIYGMSAFGLARQLGISREQAQAYMD 781 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 RYFHR+PG+ Y+E + GYVET+FGRR++ E+ + R ER AINAP+Q Sbjct: 782 RYFHRYPGVLRYMEDIRKQAHDQGYVETLFGRRLYLPEVRAASKMRRQAAERVAINAPMQ 841 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 GSAADI +RAMI + L +M++Q+HDELVFEVP + + A + I M A Sbjct: 842 GSAADIIKRAMIDIDTWLRTQPAKIRMIMQVHDELVFEVPNDVVPDAIEQIQKRMSGAA- 900 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 +L+VPL V NW++ Sbjct: 901 ---SLKVPLIVEAGTGTNWEQ 918 >gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946] gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946] Length = 929 Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust. Identities = 367/983 (37%), Positives = 552/983 (56%), Gaps = 73/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYKP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + I G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLAIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G AV I + DKD+ QLV+P L +T+ + + V++K+GIPP M+ Sbjct: 121 LALEAEKAGRAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+ G+G KTA LLQ G +++I N ++ K + + Sbjct: 181 ALMGDSSDNIPGVAGVGEKTAQALLQGLGGVKDIYANLDKVATLTFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + + L +E L++ K EF + I + D Sbjct: 241 EMALLSYQLATIKTDVELELNSDQLTVEQPAVEELLALFKHYEFKRWITDLE-----DGK 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++ NKG T + +++ D+ + + Sbjct: 296 WLQ---------GNKG-----------NPSTKKVAAVQDEPAVAEAASV----------- 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +++D Y I++ + W++KL+ +F + TD++D + I I+ +T Sbjct: 325 -----LSSDGYVTILDEETFTSWLKKLQHSELFAFDLETDSLDTLSANIIGISFATA-PG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D + ++L+ LK E+ K+G N+K+D+ VL Sbjct: 379 EAAYLPVAHDYLDAPEQLDR---------SDVLARLKPLLEDPQSQKVGQNLKFDRGVLK 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RY I + G D ML SY L+S HD+ ++A +WL + T +EI K+ + ++I Sbjct: 430 RYDIELLGIRFDTMLESYALNSVAGRHDMDTLASRWLQHKTVTFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V LQL L + P+L E+ +V+E+++ P++ V+S++E G+ IDQ Sbjct: 490 ALEQAAHYAAEDADVTLQLHLKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQ 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E+ L LE ++L+GE FNLSSPKQL ILF K KT G T Sbjct: 550 SILAVHSQELGSRLAELELKAHELAGEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + L ++ D P+ K ILE R L+K+KSTY D LP IN + RVHT Y T TGR Sbjct: 610 SEEVLAELAL-DYPLPKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AFI+P ++++ADYSQIELRI+AH+++ L F Sbjct: 669 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRILAADYSQIELRIMAHLSQDKGLLSAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIHR AAE+FGV ++KVS + RR AK INF +IYG+S F L+ QL I EA Y+ Sbjct: 729 SEQDIHRATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ +Y+E T+ Q GYV T+ GRR++ +IN+ + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDINASNAMRRKAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAMI+V LE KM++Q+HDELVFEV + + A I ME + Sbjct: 849 QGTAADIIKRAMIAVDSWLEQQPSPEVKMIMQVHDELVFEVQADAVEAACAQIRALMEGS 908 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPL+V+I V +NW + Sbjct: 909 ----MKLDVPLRVDIGVGDNWDQ 927 >gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863] Length = 928 Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust. Identities = 365/982 (37%), Positives = 558/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + T D +A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRW------TADVEAG 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + KG + Q +S+ D+ ++ + Sbjct: 295 KW---------LQAKG---------EKPAAKPQQTSVVDEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + +++W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] Length = 928 Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGPAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227] Length = 928 Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust. Identities = 363/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEEILKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69] gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75] gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5' exonuclease [Escherichia coli O127:H6 str. E2348/69] gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75] Length = 928 Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust. Identities = 362/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------RPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + +++W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ Y+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLGYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385] gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385] Length = 934 Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust. Identities = 364/985 (36%), Positives = 558/985 (56%), Gaps = 72/985 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NAI G NM+ ++ ++ + AV Sbjct: 6 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E+Y YKA+RP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 61 IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV L +T+ +D + VI+K+GIPPE ++ Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDRQGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G LE + N +I K + + E Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A+LS +L ++ DV + + L+ + + L+S L F + + Sbjct: 241 DNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 LD T G+ + D KTS S++ T+ ++ P+ Sbjct: 292 ------LDGGT----GV-----VTADEQTKTS---SVTVSTAASHAAAIPES-------- 325 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I+N +D Q W++KL+ +F TD +D + + ++ + + + Sbjct: 326 -PAAHIDRSQYQTILNEQDFQHWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 383 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D +D +++ LK E+E K+G N+KYD V+ Sbjct: 384 EAAYLPVAHDYLDAPQQLDRDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 434 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYG+ +RG D ML SYV +S HD+ S+A ++L ++ +++ K+ + ++I Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 494 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590 + + ++A E+++V L+L + P ++E KL VY ++ P++ V+S++E TG+ I Sbjct: 495 ALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEIPLVPVLSRIERTGVMI 552 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D LL S EI+ L LE+ Y+L+G+ FNLSSPKQL ILF ++K P KT +G Sbjct: 553 DDMLLSAQSQEIALRLDQLEQKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 612 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ K ++E+R L+K+KSTY D LP IN T RVHT Y A T T Sbjct: 613 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTAT 671 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP++ + G++IR+AF++P K+++ DYSQIELRI+AH++ L Sbjct: 672 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 731 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F + DIH AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA + Sbjct: 732 FRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 791 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ +YF R+PG+ +Y+E T++ Q GYVETIFGRR+H EI S + R ERAAINA Sbjct: 792 YMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINA 851 Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 P+QG+AADI ++AM+ V + +E + K+L+Q+HDELVFEV E ++ + ME Sbjct: 852 PMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLME 911 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL +NW + Sbjct: 912 SAA----ELAVPLVAEAGHGDNWDQ 932 >gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1] gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1] Length = 908 Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust. Identities = 371/982 (37%), Positives = 547/982 (55%), Gaps = 89/982 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R G P AI G +ML +L + + E A +FD Sbjct: 4 LLLVDGSSYLYRAFHALPDL-RTSKGEPTGAIRGVLSMLRRLESDYKAE----FRACVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ YP YKANRP +P+ L Q+ + A +A G P + + G EADD+I T T Sbjct: 59 AKGKTFRDDWYPQYKANRPSMPDDLRAQVGPLHEAVKAEGWPLLCVDGVEADDVIGTLTR 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + G+ V I + DKDL QLV P +T+ +E +D V K+G+PP +V AL Sbjct: 119 RALERGWEVVISTGDKDLTQLVRPGVRWVNTMSDEVLDEAGVAAKFGVPPALIVDYLALV 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L EYG L+N++ NA ++ K EN+ ++ E L ++L Sbjct: 179 GDTVDNVPGVEKCGPKTAVKWLTEYGTLDNLVANADKVGGKVG-ENLRKHLEFLPLGKRL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 V + TD+ + I LE L D + L + + EF + + DA Sbjct: 238 VTVATDLALPIQLEDLPARDDDKAALRALYERFEFRGWLQAIDDAAKSDAG--------- 288 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 +D F+ +D S + S+ + Sbjct: 289 -------------VD---------FAGKNDGLSPV-----------------SEPGAHRA 309 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I++ +W+ KLE +F T ++D +K + ++ + ++ E Sbjct: 310 GYESILDWSTFDRWLAKLEAADLVAFDTETTSLDQMAAKLVGMSFAIVEG--------EA 361 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 ++ L+ H + + L E+L+ LK + E++ K+G N+KYD VL +G+ + G Sbjct: 362 AYLPLA-HIYPAAPAQLPLA-EVLAKLKPWLESDAHPKLGQNLKYDAHVLANHGLRLGGI 419 Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWLS-----YTRKEILKSRKSSIPIDKISDSQVQE 540 D +L SYVL+S R HD+ S+A++ L YT + I D+++ + E Sbjct: 420 AHDTLLQSYVLESDRP-HDMDSLAKRHLGIDTIPYT--AVCGKGVGQICFDQVAIERATE 476 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHV-YERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++++ L+L L P+L L Y ++ P + V+ ME TG+ ID LL Q S Sbjct: 477 YAAEDADITLRLHRKLWPQLEAAPALAALYRDIEMPAMAVLFDMERTGVLIDAFLLAQQS 536 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 E+ + L++LE +DL+G+ FNL SPKQLG+ILF KL P KT TGQ T + L Q Sbjct: 537 EELGRRLMTLEREAHDLAGQPFNLGSPKQLGEILFGKLGLPVVKKTATGQPSTDEEVLAQ 596 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + D P+ K +LE R LSK+KSTY D LP +N +T RVHT +S A +TGRLAS EPN Sbjct: 597 L-ADDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNAKTGRVHTSFSQAVAVTGRLASSEPN 655 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPI+T G++IR AFI+P ++SADYSQIELRI+AH++ L Q F D+HR Sbjct: 656 LQNIPIRTAEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSSDARLLQSFAEGEDVHR 715 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAEIFG+ +V+ + RR+AK INF +IYG+S LA L + R+ AA YI RYF R+ Sbjct: 716 ATAAEIFGMTPGEVTSEQRRYAKVINFGLIYGMSAHGLAKNLGLERAAAAAYIDRYFARY 775 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 PG+ Y+E+T++ R GYVET++GRR++ EI + ++ R ERAAINAP+QG+AAD+ Sbjct: 776 PGVAAYMERTRSEARARGYVETVYGRRLYLPEIRASQAGRRQAAERAAINAPMQGTAADL 835 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI--- 956 ++AMI+ + L D L ++++LQ+HDELV EVP +E+ T +A LP + Sbjct: 836 IKKAMIATRRWLADAALRSRLVLQVHDELVLEVPRDELETV---------RATLPGLMTG 886 Query: 957 --NLRVPLKVNIKVSNNWQEEN 976 +L VPL V + NW E + Sbjct: 887 IADLSVPLLVEVGHGENWDEAH 908 >gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] Length = 933 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 356/983 (36%), Positives = 540/983 (54%), Gaps = 62/983 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P L+ G P A+ G NML L+ ++ A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D P TFR+ +Y DYKANRP +P+ L Q+ + A GI + I G EADD+I T Sbjct: 56 VDAPGKTFRDALYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183 A +G +VTI + DKD QLV P L +T+ ++D + VI K+G+ P+++V L Sbjct: 116 ALQAAADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLL 175 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD++DN+PG+ G KTAA L EY +L+ ++ NA +IK K +N+ L+ Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 R+LV ++ DV + L L + N L FT+ + + EPV Sbjct: 235 RELVTIKIDVTLASGPRALDLREPNTETLAVLYARYGFTQALRELGGALAQSGLLSEPVA 294 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 L + E R T + ++ D +++ Sbjct: 295 LGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPALSAPG------------------ 333 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD----- 418 +Y I+ + + W+ +L G +F TD++D + I ++++ K Sbjct: 334 ---AYETILTQEQLDSWIAQLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPF 390 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 +F + +D + L+ L + K+G + KYD V+ R Sbjct: 391 GHNFPGAPVQLDRT---------------HALAQLAPLLTDPAVRKVGQHGKYDLHVMRR 435 Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 +G+ + G+ +D +L S+VL+SG + HD+ S+A+++L Y +++ IP +IS Sbjct: 436 HGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQIS 495 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQD 593 +A E++++ L+L +L PKL E L VY ++ P++DV++++E G+ +D Sbjct: 496 LDDATRYAAEDADITLRLHHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAA 555 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L++ SA++SK +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T Sbjct: 556 ELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTN 615 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 LE I + + + ILE+R LSK++STY D LP I+ ++ RVHT Y A TGRL Sbjct: 616 EDALEAI-ADQHELPRVILEYRGLSKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRL 674 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++ L F + Sbjct: 675 SSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFAS 734 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 D+HR AAE+FG I+ VS RR AK INF ++YG+S F LA QL I R EA DYI Sbjct: 735 GTDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIA 794 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF R+PG+ +++E T+ R GYVET+FGRR++ D IN+ R ERAAINAP+Q Sbjct: 795 LYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQ 854 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI +RAM+ V + DH KM+LQ+HDELVFE + + T + M A Sbjct: 855 GTAADIIKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMASAA- 913 Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976 LRVPL V+ V ++W + + Sbjct: 914 ---ELRVPLVVDSGVGDDWDQAH 933 >gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 688 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 300/696 (43%), Positives = 447/696 (64%), Gaps = 19/696 (2%) Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347 +A D DA+++EP ++ + + + ++ SQ S + ++ + TP Sbjct: 1 MAEATDTDASSVEPCHVETDWGADAH-GPDVDVPEKADAAASQLLS-APTAAEPDQGYTP 58 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 + L R + I+ +Y I + ++QW+ + G +F T ++D ++ + Sbjct: 59 KALAEGRAAQAIAQKIDTSAYVCIRDIATLEQWLAEAAETGILAFDTETTSLDPMQAELV 118 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHT-SQDSTGKNTLTKEI-----LSYLKKFFENEH 461 +++ K ++ L + + D G + +I L+ LK+ E+ Sbjct: 119 GFSLALAPGK--------AAYVPLQHKSGAGDLLGGGMVENQIPLDMALAALKRVLEDAS 170 Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RK 518 LKI N+KYD LV+ R+GI+ F+D ML+SYVLD+G SH + ++++WL +T K Sbjct: 171 ILKIAQNMKYDWLVMRRHGINAVSFDDTMLISYVLDAGTGSHGMDPLSERWLGHTPIAYK 230 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 ++ S KS++ D + + +A E+++V L+LW +L+P+L E L+ VYERL++P++D Sbjct: 231 DVAGSGKSAVTFDMVDIDRATAYAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVD 290 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V+++ME GI +D+ +L ++S ++++ + E+ IY L+GEKF + SPKQLGDILF K+ Sbjct: 291 VLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGDILFGKMG 350 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P +KTKTGQW T+AQ LE + +P+ + I++WRQL+K+KSTY D+LP IN +T+R Sbjct: 351 LPGASKTKTGQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKR 410 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT Y++AST TGRL+S +PNLQNIP++T G+KIR AFI+ P KLISADYSQIELR+L Sbjct: 411 VHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNKLISADYSQIELRVL 470 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH+A I L Q F + +DIH M A+E+FGV +E + ++RR AK INF IIYGIS F LA Sbjct: 471 AHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLA 530 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL IPR EA YI+ YF RFPGI +Y+E TK F R++GYVETIFGRR HY +I + Sbjct: 531 NQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQ 590 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 +R NERAAINAPIQG+AADI RRAMI + +L LA +MLLQ+HDEL+FEVPE E+ Sbjct: 591 VRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVE 650 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ ME A +P ++L VPL+V+ + ++NW E Sbjct: 651 KTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNWDE 686 >gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] Length = 934 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 357/979 (36%), Positives = 541/979 (55%), Gaps = 53/979 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P L+ G P A+ G NML L+ ++ A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D P TFR+++Y DYKANRP +P+ L Q+ + A GI + I G EADD+I T Sbjct: 56 VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183 +G AVTI + DKD QLV P L +T+ ++D + VI K+G+ PE++V L Sbjct: 116 ALQGAADGLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPEQIVDLL 175 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD++DN+PG+ G KTAA L EY +L+ ++ NA +IK K +N+ L+ Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI-EPV 302 R LV ++TDV + L L + N L FT+ + + A + EPV Sbjct: 235 RTLVTIKTDVTLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAAQAGLLAEPV 294 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 L + E R T + ++ D +++ Sbjct: 295 ALGAAAATAR---TEPGRARGTGFVSGPVNAAVDLDPSLSAP------------------ 333 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 Y I+ + + W+ +L G +F TD++D + I ++++ + Sbjct: 334 ---GQYDTILTQEQLDSWIARLRAAGQFAFDTETDSLDPLQADLIGLSVAA-EPGQAAYL 389 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 F + V + + L+ L + K+G + KYD V+ R+G+ Sbjct: 390 PFGHNFPGVPVQLDR---------TQALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGVE 440 Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538 + G+ +D +L S+VL+SG + HD+ S+A+++L Y +++ IP +IS Sbjct: 441 LAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDA 500 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ L+L +L P+L E L VY ++ P++DV++++E G+ +D L++ Sbjct: 501 TRYAAEDADITLRLHRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRR 560 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 A++SK +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T + L Sbjct: 561 QRADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEAL 620 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E I + + + ILE+R L+K++STY D LP I+ ++ RVHT Y A TGRL+S + Sbjct: 621 EAI-ADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSD 679 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++ L FE+ D+ Sbjct: 680 PNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADV 739 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG I+ VS RR AK INF ++YG+S F LA QL I R EA DYI YF Sbjct: 740 HRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFS 799 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ +++E T+ R GYVET+FGRR++ D IN+ R ERAAINAP+QG+AA Sbjct: 800 RYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAA 859 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI +RAM+ V + DH KM+LQ+HDELVFE + + T + M A Sbjct: 860 DIIKRAMVKVDGWIADHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMAGAA----E 915 Query: 958 LRVPLKVNIKVSNNWQEEN 976 LRVPL V+ V +NW + + Sbjct: 916 LRVPLVVDSGVGDNWDQAH 934 >gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2] gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2] Length = 956 Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust. Identities = 364/985 (36%), Positives = 555/985 (56%), Gaps = 86/985 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDGSS++YRAF+A P L+ G P A+ G +ML KL+++ + + AV Sbjct: 42 EKPIILVDGSSYLYRAFHALPPLTTSS-GQPTGAVRGVASMLRKLIKDYDPQ----YMAV 96 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E++ +YK+NRP +P+ L Q+ + +A G+P I G EADD+I T Sbjct: 97 IFDAKGKTFRDELFEEYKSNRPPMPDDLRAQVQPLHDLIRAMGLPLIIEDGVEADDVIGT 156 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + I +G V I + DKD+ QLV+ L +T+ DIE V +K+G+ PE ++ Sbjct: 157 FARIFGAQGKPVLISTGDKDMAQLVTEHVTLINTMNNALYDIEGVKQKFGVGPELIIDFL 216 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GD +DNIPG+PG+G KTA L+Q G+LE+I N +I + K + + E+ Sbjct: 217 ALMGDKVDNIPGVPGVGEKTALGLIQGLGSLEDIYANLDKIAELSFRGAKTMAKKLEEHK 276 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++ D ++ L L L + + L + K LEF ++ + + D Sbjct: 277 EMAFLSYQLATIKLDCELSEDLNDLKLGEPDNESLARYFKELEFKGWLSEILSGADA--- 333 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 S ++ N+E P F Sbjct: 334 ----------------------------------SVVAAAEEAGNNEAAPAAGF------ 353 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 N D+Y + + + +W+ KL+ G +F T +++ +++ + A++ D Sbjct: 354 ------NRDAYDIVYSEAMLDKWLDKLKAAGEFAFDTETTSLNYMNAELVGFAVAVSD-- 405 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 K I + + D K ++ K E++ KIG N+KYD VL Sbjct: 406 -----KAAYIPFGHNYPGAPDQIDKQL----VIDKFKPLLEDDSLKKIGQNLKYDMSVLA 456 Query: 478 R-YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPI 530 GI++RG D ML SYVLDS + HD+ S+A K+L S+T +I + Sbjct: 457 EDAGITLRGVAFDTMLESYVLDSVATRHDMDSLALKYLGRKTISFT--DIAGKGAKQLTF 514 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589 ++I + +A E+++V L+L L PKL E +L V+ ++ P++ V+S++E G Sbjct: 515 NQIGLHEASPYAAEDADVTLRLHQTLWPKLEAEDRLPEVFRDIELPLVTVLSRIERNGTY 574 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 +D LLK S ++K + L+E +D++G++FNL+SPKQLG+IL+ KL+ P KT G Sbjct: 575 VDATLLKHQSQFLAKRMAELQEKAFDIAGQEFNLASPKQLGEILYEKLEIPVIKKTPKGA 634 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 +TA+ + Q D P+ + I+++R ++K+K+TY D LP IN+RT RVHT Y A T Sbjct: 635 -PSTAEAVLQELAHDYPLPQVIMDYRGVAKLKNTYTDKLPELINQRTGRVHTSYHQAVTA 693 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIP++++ G+KIR+AF++P KK+++ DYSQIELRI+AH++ L Sbjct: 694 TGRLSSSDPNLQNIPVRSEEGRKIRQAFLAPKGKKIVACDYSQIELRIMAHLSGDKGLTD 753 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 FE LDIHR AAE++G +++VS RR+AK INF +IYG+S F LA QL +PR EA Sbjct: 754 AFEQGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIYGMSAFGLAKQLGLPRKEAQ 813 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 +YI YF R+PG+ +Y+E T+ GYVET++GRR++ EI+S R ERAAIN Sbjct: 814 EYIDLYFERYPGVKKYMEDTRALAIDKGYVETVYGRRLYLPEIHSKNGQRRQGAERAAIN 873 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AADI ++AMI VH LE KM++Q+HDELVFEV ++++ + + ME Sbjct: 874 APMQGTAADIIKKAMIKVHDWLETTHFDAKMIMQVHDELVFEVADDQVDDLVKEVKARME 933 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L+VPL V+ NW+E Sbjct: 934 SAA----ELKVPLIVDAGAGENWEE 954 >gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687] Length = 928 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 362/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++ DV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKIDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV +++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401] gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401] Length = 928 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 365/982 (37%), Positives = 556/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 EK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREVEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + T D +A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRW------TADVEAG 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + KG T Q +S++D+ ++ + Sbjct: 295 KW---------LQAKGA---------KTAAKPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S + L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease [Shigella flexneri 2002017] gi|332751499|gb|EGJ81900.1| DNA polymerase I [Shigella flexneri K-671] gi|332753203|gb|EGJ83586.1| DNA polymerase I [Shigella flexneri 2747-71] gi|333013930|gb|EGK33292.1| DNA polymerase I [Shigella flexneri K-304] Length = 928 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 365/982 (37%), Positives = 556/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + T D + Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRW------TADVEVG 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + KG T Q +S++D+ ++ + Sbjct: 295 KW---------LQAKGA---------KTAAKPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S + L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51] gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51] Length = 930 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 365/985 (37%), Positives = 558/985 (56%), Gaps = 72/985 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NAI G NM+ ++ ++ + AV Sbjct: 2 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E+Y YKA+RP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 57 IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 117 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 176 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G LE + N +I K + + E Sbjct: 177 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 236 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A+LS +L ++ DV + + L+ + + L+S L F + + Sbjct: 237 DNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTEL--------- 287 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 LD T G+ + D KTS S++ T+ ++ P+ Sbjct: 288 ------LDGGT----GV-----VTADEQTKTS---SVTVSTAATHAAVIPES-------- 321 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I+N +D Q W++KL+ +F TD +D + + ++ + + + Sbjct: 322 -PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 379 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D +D +++ LK E+E K+G N+KYD V+ Sbjct: 380 EAAYLPVAHDYLDAPQQLDRDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 430 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYG+ +RG D ML SYV +S HD+ S+A ++L ++ +++ K+ + ++I Sbjct: 431 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQI 490 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590 + + ++A E+++V L+L + P ++E KL VY ++ P++ V+S++E TG+ I Sbjct: 491 ALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEIPLVPVLSRIERTGVMI 548 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D LL S EI+ L LE+ Y+L+G+ FNLSSPKQL ILF ++K P KT +G Sbjct: 549 DDMLLSAQSQEIALRLDQLEQKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 608 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ K ++E+R L+K+KSTY D LP IN T RVHT Y A T T Sbjct: 609 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTAT 667 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP++ + G++IR+AF++P K+++ DYSQIELRI+AH++ L Sbjct: 668 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 727 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F + DIH AAEI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA + Sbjct: 728 FRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 787 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ +YF R+PG+ +Y+E T++ Q GYVETIFGRR+H EI S + R ERAAINA Sbjct: 788 YMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINA 847 Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 P+QG+AADI ++AM+ V + +E + K+L+Q+HDELVFEV E ++ + ME Sbjct: 848 PMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLME 907 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL +NW + Sbjct: 908 SAA----ELAVPLVAEAGHGDNWDQ 928 >gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197] gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617] gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197] gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617] Length = 928 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 362/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYGEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D L SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTRLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELERKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLSDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] Length = 929 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 366/983 (37%), Positives = 545/983 (55%), Gaps = 73/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P D +P NA+ G NML +++ E IA V Sbjct: 6 DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASERIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A + G V I + DKD+ QLV L +T+ +D E V++K+GIPPE ++ Sbjct: 121 LAYQASQSGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LL+ G L+ + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLRGIGGLDKLYENLDDIAPLGFRGSKTMAKKLVDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A+LS +L ++ DV + E L+ + N LI L F +N + D + Sbjct: 241 ENAQLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLVFKSWLNEL---LDGGSG 297 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +E NT + A+ D DT+ T Sbjct: 298 VVEADEKSANTASSASPAV----DMDTSAVT----------------------------- 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I++ W++KL+ +F TD++D + + ++ +T ++ Sbjct: 325 -----IDRSQYETILDEASFNAWLEKLKAADVFAFDTETDSLDYMVANLVGLSFAT-EEG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L LK E++ K+G N+KYD VL Sbjct: 379 VAAYVPVAHDYLDAPAQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDASVLA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ ++I K + ++I Sbjct: 430 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + +A E+++V L+L L + EKL +Y+ ++ P++ V+S++E TG+ ID Sbjct: 490 ELDEASPYAAEDADVTLRLHNRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDD 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L S EI++ L LE+ Y+++ ++FN++SPKQL ILF K+ P KT +G T Sbjct: 550 MKLSAQSQEIAQRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGTPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 610 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ D G++IR+AFI+P K+++ DYSQIELRI+AH++ L F+ Sbjct: 669 LSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDQALLDAFQ 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH AAEI G I++VS + RR AK +NF +IYG+S F LA QL IPR EA DY+ Sbjct: 729 QGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 +YF R+PG+ +Y+E T++ GYVETIFGRR+H EI S R ERAAINAP+ Sbjct: 789 NKYFERYPGVMQYMEDTRSAAADQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + ++ + + K+L+Q+HDELVFEV E + + ME A Sbjct: 849 QGTAADIIKKAMLLVDEWIQAEGQGRVKLLMQVHDELVFEVEESSLAEIESKVQQLMESA 908 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 +L VPL +NW + Sbjct: 909 A----DLDVPLVAEAGHGDNWDQ 927 >gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] Length = 928 Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust. Identities = 366/986 (37%), Positives = 557/986 (56%), Gaps = 80/986 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + + Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGL-------- 371 Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF +E +I ++ H D+ + +++E L LK E+E LK+G N+KYD+ Sbjct: 372 ---SFAIEPGVAAYIPVA-HDYLDAP--DQISRERALELLKPLLEDEKALKVGQNLKYDR 425 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + Sbjct: 426 GILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 485 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGI 588 ++I+ + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G+ Sbjct: 486 FNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGV 545 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +ID +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G Sbjct: 546 KIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGG 605 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T+ + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T Sbjct: 606 APSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 664 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L Sbjct: 665 ATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 724 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEA 784 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ ++ YVET+ GRR++ +I S + R ERAAI Sbjct: 785 QKYMDLYFERYPGVLEYMERTRAQAKEQSYVETLDGRRLYLPDIKSSNGARRAAAERAAI 844 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV +++ ++ I H + Sbjct: 845 NAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQI-HQL 903 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 + C L VPL V + NW + Sbjct: 904 MENC---TRLDVPLLVEVGSGENWDQ 926 >gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] Length = 928 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 366/986 (37%), Positives = 558/986 (56%), Gaps = 80/986 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+ L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTSNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + + Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGL-------- 371 Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF +E +I ++ H D+ + +++E L LK E+E LK+G N+KYD+ Sbjct: 372 ---SFAIEPGVAAYIPVA-HDYLDAP--DQISRERALELLKPLLEDEKALKVGQNLKYDR 425 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + Sbjct: 426 GILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 485 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGI 588 ++I+ + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G+ Sbjct: 486 FNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGV 545 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +ID +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G Sbjct: 546 KIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGG 605 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T+ + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T Sbjct: 606 APSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 664 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L Sbjct: 665 ATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 724 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 725 TAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEA 784 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAI Sbjct: 785 QKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAI 844 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + Sbjct: 845 NAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQL 903 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 + C L VPL V + NW + Sbjct: 904 MENC---TRLDVPLLVEVGSGENWDQ 926 >gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301] gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5 exonuclease [Shigella flexneri 2a str. 301] Length = 928 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 365/982 (37%), Positives = 556/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + T D + Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRW------TADVEVG 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + KG T Q +S++D+ ++ + Sbjct: 295 KW---------LQAKGA---------KTAAKPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S + L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEHADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|262273193|ref|ZP_06051009.1| DNA polymerase I [Grimontia hollisae CIP 101886] gi|262222771|gb|EEY74080.1| DNA polymerase I [Grimontia hollisae CIP 101886] Length = 931 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 364/983 (37%), Positives = 543/983 (55%), Gaps = 71/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A+P L+ G P A+ G NML L+ K+ SH AV Sbjct: 6 DNPLILVDGSSYLYRAYHASPNLTNAK-GEPTGAVYGVVNMLRSLV----KQYPQSHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+++Y +YKA+RP +P+ L Q+ + +A G P + I+G EADD+I T Sbjct: 61 IFDAKGKTFRDDMYAEYKAHRPPMPDDLRSQIAPLHEIIEAMGFPMLVIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 K G + I + DKD+ QLV L +T+ + + V K+G PE ++ Sbjct: 121 LAVQGSKAGMPILISTGDKDMAQLVDDNITLINTMTNVIMTPQGVHDKYGFGPEHIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA L+ G L++I N +I K + + E Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALIAGIGGLDDIYANLDKIADLGFRGSKTMAKKLEENK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++ D + E L + + +L++ L F + + Sbjct: 241 ENAYLSYQLATIKLDCELPFKPEELTNREPDNEKLVALFTELNFKRWLAE---------- 290 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +N G + T + S + S N+E + ++R Q Sbjct: 291 -----------AQNGGAGV-------TALSEKAASGTTATKSAENAEVVFKAAIIDRSQ- 331 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I+ + Q+W++KL+ +F TD++D + + I+ + + Sbjct: 332 ----------YDTILTEEAFQRWMEKLKNADVVAFDTETDSLDYMEANLVGISFAVAEG- 380 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E ++ L+ H D+ K +L+ +K + E+ LK+G N+KYD VL Sbjct: 381 -------EAAYLPLA-HDYLDAP-KQLDRDWVLAEMKLWLEDAGALKVGQNLKYDASVLA 431 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RY I+MRG D ML SYV +S HD+ S+A ++L + + +EI K + ++I Sbjct: 432 RYDIAMRGIAYDTMLESYVFNSVAGKHDMDSLALRYLQHQCISFEEIAGKGKKQLTFNQI 491 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q +A E+++V L+L L +L EKL ++E+ + P++ V+S+ME G+ I Sbjct: 492 ELDQAAPYAAEDADVTLRLHNALMAQLNNDEKLKVIFEQYEMPLVPVLSRMERHGVLISA 551 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 ++L + S EI+ L +LE+ +++L+GE+FNLSSPKQL ILF K+ P KT +G T Sbjct: 552 EMLAKQSQEIAVRLDTLEKEVFELAGEEFNLSSPKQLQAILFEKMGLPVVKKTPSGTPST 611 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP + T RVHT Y A T TGR Sbjct: 612 NEEVLQELAL-DYPLPKRILEYRGLAKLKSTYTDKLPKMVKPATGRVHTSYHQAVTATGR 670 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AFI+P K +++ DYSQIELRI+AH++ L F Sbjct: 671 LSSTDPNLQNIPIRNEEGRRIRQAFIAPAGKTILAVDYSQIELRIMAHLSGDEALIDAFR 730 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH AAE+ G++I V+P+MRR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 731 HGKDIHAATAAEVMGIDISDVTPEMRRRAKAINFGLIYGMSAFGLAKQLGIPRGEAQQYM 790 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 RYF R+PG+ +Y+E T+ + GYVETIFGRR+H EI S + R ERAAINAP+ Sbjct: 791 DRYFERYPGVRQYMENTRLQAAEQGYVETIFGRRLHLPEIKSSNAMRRKGAERAAINAPM 850 Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAMI V ++ +++Q+HDELV EV E + Q + ME A Sbjct: 851 QGTAADIIKRAMILVDAWIQQQPEGRVALIMQVHDELVLEVDTEHLAEVEQQVCKLMESA 910 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L L VPL + NW + Sbjct: 911 AL----LDVPLVADSGSGANWDQ 929 >gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72] gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72] Length = 918 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 374/980 (38%), Positives = 547/980 (55%), Gaps = 75/980 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R G P AI G +ML +L + + E + A +FD Sbjct: 4 LLLVDGSSYLYRAFHALPDL-RNSRGEPTGAIRGVLSMLRRLESDYKAE----YRACVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ YPDYKANRP +P+ L Q+ + A QA G P + + G EADD+I T T Sbjct: 59 AKGKTFRDDWYPDYKANRPSMPDDLRVQVEPLHAAVQAEGWPLLSVDGVEADDVIGTLTR 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + G+ V I + DKDL QLV P +T+ EE +D V K+G+PPE++V AL Sbjct: 119 QAVERGWEVVISTGDKDLTQLVRPGVRWVNTMSEEVLDEAGVTAKFGVPPERIVDYLALV 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L EYG L+ ++ +A ++ K EN+ ++ E L R+L Sbjct: 179 GDTVDNVPGVEKCGPKTAVKWLTEYGTLDALVASADKVGGKVG-ENLRKHLEFLPLGRRL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 V + TD+P+ + L+ L D + L + + EF + +A D Sbjct: 238 VTVATDIPLPVTLDELPARDDDREALKALYERFEFRSWLQDIA-----DGNRPGRSAPAG 292 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 N A+ETE ++ QT + + Sbjct: 293 NGLRRNFAAVETE--------------------PVDPPQT-------------EPGAHRV 319 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y +++ WV +LE +F T ++D ++ + ++ + L Q E Sbjct: 320 GYLTLLDWAQFDTWVARLEATPLVAFDTETTSLDPMSARLVGMSFA-LAQG-------EA 371 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 ++ L+ H D + L E+L+ LK + E++ K+G N+KYD VL +GI + G Sbjct: 372 AYLPLA-HRGTDVPQQLPL-DEVLARLKPWLESDRHAKLGQNLKYDAHVLLNHGIRLGGI 429 Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 D +L SYVL+S + HD+ S+A++ L T E+ I D+++ +A Sbjct: 430 THDTLLESYVLESDKP-HDMDSLAKRHLGLTTIPYTEVCGKGAKQIGFDEVALDCAAAYA 488 Query: 543 IENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V L+L L P++ + +L +Y ++ P + V+ +ME TG+ ID LL Q E Sbjct: 489 AEDADVTLRLHETLWPQVEALPRLAALYRDVELPTLQVLFEMERTGVLIDPFLLAQHGEE 548 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + + LL LE + L+G+ FNL SPKQLG+ILF KL P KT TGQ T L Q+ Sbjct: 549 LGRRLLGLEAEAHVLAGQPFNLGSPKQLGEILFGKLALPVLKKTATGQPSTDEDVLTQL- 607 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R L+K+KSTYAD LP +N +T RVHT +S A+ +TGRLAS +PNLQ Sbjct: 608 AEDYPLPKLLLEHRSLAKLKSTYADKLPRMVNPKTGRVHTCFSQATAVTGRLASTDPNLQ 667 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+T G++IR AFI+P ++SADYSQIELRI+AH++ L + F D+HR Sbjct: 668 NIPIRTAEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSGDARLLEAFAEGEDVHRAT 727 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +VS + RR+AK INF +IYG+S LA L I R A +I RYF R+PG Sbjct: 728 AAEVFGVAPSEVSSEQRRYAKVINFGLIYGMSAHGLAKNLGIERGAAQAWIDRYFARYPG 787 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + +Y+E+ K + GYVET+FGRR+H +I + ++ R ERAAINAP+QG+AAD+ + Sbjct: 788 VADYMERIKAEAKDKGYVETVFGRRLHLPDIRAQQAGRRQAAERAAINAPMQGTAADLIK 847 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI----- 956 +AMI+V L L ++++LQ+HDELV EVP E+ T +A LP + Sbjct: 848 KAMIAVSGWLRASGLKSRLVLQVHDELVLEVPVAEVETL---------RAALPGLMGGVA 898 Query: 957 NLRVPLKVNIKVSNNWQEEN 976 L VPL V + V NNW E + Sbjct: 899 ALSVPLLVEVGVGNNWDEAH 918 >gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] Length = 926 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 357/978 (36%), Positives = 545/978 (55%), Gaps = 59/978 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P L+ G P A+ G NML L+ ++ A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYVAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D P TFR+++Y DYKANRP +P+ L Q+ + A GI + I G EADD+I T Sbjct: 56 VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183 A +G +VTI + DKD QLV P L +T+ ++D + VI K+G+ P ++V L Sbjct: 116 ALQAASDGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPNQIVDLL 175 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD+IDN+PG+ G KTAA L EY +L+ ++ NA +IK K EN+ L+ Sbjct: 176 ALMGDAIDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-ENLRAALPRLPLN 234 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 R+LV ++TDV + L L D N L F++ + + AA ++ Sbjct: 235 RELVTIKTDVVLASGPRALDLRDPNAEALAVLYARYGFSQALRELGGAA---AAGVQTDA 291 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 + + TE G A R T + S+ + + + Sbjct: 292 MAVARTE-PGRA------RGTGFVSGPASAPVELDPALAAP------------------- 325 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 Y I+ + W+ +L G +F TD++D + I ++++ + Sbjct: 326 --GQYETILTQAQLDNWIVRLRAAGQFAFDTETDSLDPLQANLIGLSVA--------AEP 375 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 + ++ H + + T + L+ L + K+G + KYD V+ R+G+ + Sbjct: 376 GQAAYLPFG-HDFPGAPAQLDRT-QALAQLAPLLTDPALRKLGQHGKYDLHVMRRHGVEL 433 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 G+ +D +L S+VL+SG + HD+ S+A+++L Y +++ I ++S Sbjct: 434 AGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIKFAQVSLEDAT 493 Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +A E++++ L+L +L PKL E L VY ++ P+++V++++E G+ +D L++ Sbjct: 494 RYAAEDADITLRLHQVLGPKLSAEPGLERVYRDIEMPLVEVLARIEANGVCVDAAELRRQ 553 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 SA++SK +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T + LE Sbjct: 554 SADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALE 613 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 I + + + ILE+R L+K++STY D LP I+ ++ RVHT Y A TGRL+S +P Sbjct: 614 AI-ADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDP 672 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++ L FE+ D+H Sbjct: 673 NLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVSAFESGADVH 732 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R AAE+FG I+ VS RR AK INF ++YG+S F LA QL I R EA DYI YF R Sbjct: 733 RATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSR 792 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ +++E T+ R GYVET+FGRR++ D IN+ R ERAAINAP+QG+AAD Sbjct: 793 YPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAAD 852 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I +RAM+SV + +H M+LQ+HDELVFE + + T + M A L Sbjct: 853 IIKRAMVSVDGWIAEHAQRALMILQVHDELVFEADIDFVDTLLSEVTARMATAA----QL 908 Query: 959 RVPLKVNIKVSNNWQEEN 976 RVPL V+ V +NW E + Sbjct: 909 RVPLVVDSGVGDNWDEAH 926 >gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14] Length = 928 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 362/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPNDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+F + +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFSLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 ---TRLDVPLLVEVGSGENWDQ 926 >gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica] Length = 929 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 368/984 (37%), Positives = 559/984 (56%), Gaps = 75/984 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + SH AV Sbjct: 6 DNPLILVDGSSYLYRAYHAFPPLTNS-TGEPTGAMYGVLNMLRSLVMQYKP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQLVEAMGLPLLVVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEKEG +V I + DKD+ QLV+P L +T+ + E V++K+G+PPE ++ Sbjct: 121 LALQAEKEGRSVLISTGDKDMAQLVTPNITLINTMNNTILGPEEVVEKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-----KQKKRRENILE-YA 237 AL GDS DNIPG+PG+G KTA LLQ G +++I N +I + K N LE + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALGLLQGIGGIDDIFANLDKIAGLSFRGAKTLANKLEPHK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + L + + +L EF + ++ VA Sbjct: 241 DVAYLSYKLATIKTDVELDKTCVALSVAKPDTEKLHQLFSRYEFKRWLSDVANG------ 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 D ++K +A D + S S+L Sbjct: 295 -------DWLAAKDKKLASTGSDDSASVESESVSSTLP---------------------- 325 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +D+Y I++ K +W++KL+ +F TD++D + + ++ + + Sbjct: 326 -------SDNYQTILDQKSFDEWIEKLKRAPVFAFDTETDSLDTLTANLVGMSFA-ITAG 377 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 D + ++ +D+ +L+ LK E+ + LKIG NIK+D VL Sbjct: 378 DAAYLPLGHDYLGAPEQLDRDA---------VLAALKPLLEDSNLLKIGQNIKFDCGVLV 428 Query: 478 RYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531 RYGI ++G D ML SYVL+S G HD+ S+A++ L+Y T +EI K+ + + Sbjct: 429 RYGIELQGIAYDTMLESYVLNSVAGMGRHDMDSLAERHLNYKTTTFEEIAGKGKNQLTFN 488 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q +A E+++V LQL ++ P+L V L V+ + P+I V+S+ME G+ I Sbjct: 489 QVPVEQAAMYAAEDADVTLQLHQVIWPQLEKVPALEKVFLETEMPLIMVLSRMERAGVLI 548 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 + D+L + S EI+ L LE+ ++L+GE FNL+SPKQL ILF KL P KT G Sbjct: 549 NSDILAEHSKEIAVRLDELEKEAHELAGEVFNLASPKQLQTILFEKLNLPVVKKTPGGAP 608 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + LE++ + + K ILE R L+K+KSTY D LP ++ T+RVHT Y A T T Sbjct: 609 STNEEVLEEL-VDHHELPKVILEHRGLAKLKSTYTDKLPQMVHPLTKRVHTSYHQAVTAT 667 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP++ + G++IR+AFI+ ++++ADYSQIELRI+AH+++ L + Sbjct: 668 GRLSSRDPNLQNIPVRNEEGRRIRQAFIASEGYRIMAADYSQIELRIMAHLSQDQGLLKA 727 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F DIHR AAE+F V +E+V+ + RR AK INF +IYG+S F L+ QL IPR EA Sbjct: 728 FAEGQDIHRATAAEVFDVPLEQVTSEQRRSAKAINFGLIYGMSAFGLSRQLGIPRGEAQR 787 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ YF R+PG+ Y+E+T+ + GYVET+ GRR++ +I S + R ER AINA Sbjct: 788 YMDLYFERYPGVLAYMERTREQAEEQGYVETLAGRRLYLPDIKSRNGTRRKAAEREAINA 847 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AADI ++AMI+V + +M++Q+HDELVFEV E E+ Q I MEK Sbjct: 848 PMQGTAADIIKKAMIAVDDWIISEAPKVRMIMQVHDELVFEVHESELENTEQKIRELMEK 907 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 + + L VPL+V++ + +NW + Sbjct: 908 SVV----LDVPLQVDVGIGDNWDQ 927 >gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] Length = 930 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 368/987 (37%), Positives = 555/987 (56%), Gaps = 80/987 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFESYKSHRPPMPDDLREQIAPLHEMVEAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A ++G V I + DKD+ QLV P L +T+ + + V K+G+PPE ++ Sbjct: 121 LARQASQKGIPVLISTGDKDMAQLVEPNITLINTMTNTILGPQEVEDKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G+L+ I + +I K + E Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALALLQGIGSLKEIYDSLDKIAPLGFRGSKTLAPKMEENR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + E L + + + +L EF + + V D Sbjct: 241 EVAFLSYQLATIKTDVELEKSCEELAISEPDTDKLYQLFSRYEFKRWLADVENGTWMDGK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + + + TE K A+ Sbjct: 301 SGKSSAPAASKTEKKIEAV----------------------------------------- 319 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ ++ ++Y I+ D+ +W++KL + +F TD++D ++ + + Sbjct: 320 MAAPTLSAENYQTILEKADLDRWIEKLTSASIFAFDTETDSLDTQEARLVGM-------- 371 Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 SF +E ++ L H D+ + L ++L+ +K EN+ LKIG N+KYD Sbjct: 372 ---SFAIEPGYAAYLPLG-HDYLDAPVQLPLN-DVLAAMKPILENDKILKIGQNLKYDAE 426 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528 VL Y I ++G D ML SYVL+S G HD+ S+A++ L++ + +EI K + Sbjct: 427 VLLNYDIELKGIAFDTMLESYVLNSVAGMGRHDMDSLAERHLNHKTVSFEEIAGKGKKQL 486 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587 ++I+ Q +A E+++V L L L P+L E KL HV+ ++ P++ V+ +ME G Sbjct: 487 TFNQIALEQAANYAAEDADVTLLLHQALYPQLEAEPKLNHVFREIEMPLVPVLVRMERKG 546 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + ID +L S EI+ L LE+ ++L+GE+FNL+S KQL ILF KL+ P KT + Sbjct: 547 VLIDAAVLAAQSKEITARLAELEKEAFELAGEEFNLASTKQLQTILFEKLQLPVVKKTPS 606 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + LE++ ++ + K +LE R L+K+KSTY D LP I+ +TQRVHT Y A Sbjct: 607 GAPSTNEEVLEELAL-NHALPKLLLEHRSLAKLKSTYTDKLPLMISTKTQRVHTSYHQAV 665 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIP++T+ G++IR+AFI+ K+++ADYSQIELRI+AH+++ L Sbjct: 666 TATGRLSSRDPNLQNIPVRTEEGRRIRQAFIARKGYKVVAADYSQIELRIMAHLSQDKGL 725 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F DIHR AAE+FGV +++V+ RR AK INF +IYG+S F LA QL IPR E Sbjct: 726 LTAFAEGKDIHRATAAEVFGVPLDEVTSDQRRSAKAINFGLIYGMSAFGLARQLGIPRGE 785 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A Y+ YF R+PG+ Y+E T++ + GYVET+ GRR++ +I S R ER A Sbjct: 786 AQRYMDLYFERYPGVLRYMENTRHQAAEQGYVETLEGRRLYLADIKSSNGMRRKAAEREA 845 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AADI ++AMI+V L+ K ML+Q+HDELVFEV E E+ + + I Sbjct: 846 INAPMQGTAADIIKKAMIAVDAWLQTEKPHADMLMQVHDELVFEVKESELDSVTTKIREL 905 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME++ + L VPLKV++ + +NW E Sbjct: 906 MEQS----MQLDVPLKVDVGIGDNWDE 928 >gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96] gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96] gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163] Length = 929 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 364/983 (37%), Positives = 550/983 (55%), Gaps = 73/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYKP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + I G EADD+I T Sbjct: 61 VFDAKGKTFRDELFDAYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLAISGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G AV I + DKD+ QLV+P L +T+ + + V++K+GIPP M+ Sbjct: 121 LALEAEKAGRAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+ G+G KTA LLQ G ++ I N ++ K + + Sbjct: 181 ALMGDSSDNIPGVAGVGEKTAQALLQGLGGVKEIYDNLDKVATLTFRGAKTMAARLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + + L +E+ L++ K EF + I + Sbjct: 241 EMALLSYQLATIKTDVELELTSDQLTVEEPAVEELLALFKHYEFKRWITDLEDGKWLQGN 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 P + K A++ E ++++ TS ++S Sbjct: 301 KGSP-------STKKKAAVQNE------------PAVAEATSMLSS-------------- 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 D Y I++ W++KL+ +F + TD++D + I ++ +T Sbjct: 328 --------DGYVTILDEDTFTSWLKKLQDSELFAFDLETDSLDTLSANIIGLSFATA-PG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D + ++L+ LK E+ K+G N+K+D+ VL Sbjct: 379 EAAYLPVAHDYLDAPEQLDR---------SDVLARLKPLLEDPQAQKVGQNLKFDRGVLK 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RY I ++G D ML SY L+S HD+ ++A +WL++ T +EI K+ + ++I Sbjct: 430 RYDIELQGIRFDTMLESYALNSVAGRHDMDTLASRWLNHKTVTFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V LQL + + P+L E+ +V+E+++ P++ V+S++E G+ ID Sbjct: 490 ALEQAAHYAAEDADVTLQLHVKMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E+ L LE ++L+GE FNLSSPKQL ILF K KT G T Sbjct: 550 GILATHSQELGSRLAELELKAHELAGEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + L ++ D P+ K ILE R L+K+KSTY D LP IN + RVHT Y T TGR Sbjct: 610 SEEVLAELAL-DYPLPKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AFI+P ++++ADYSQIELRI+AH+++ L F Sbjct: 669 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLSQDKGLLSAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIHR AAE+FGV+++KVS + RR AK INF +IYG+S F L+ QL I EA Y+ Sbjct: 729 SEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ +Y+E T+ Q GYV T+ GRR++ +I + + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDIKASNAMRRKAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAMI+V + LE KM++Q+HDELVFEV + + A I ME + Sbjct: 849 QGTAADIIKRAMIAVDRWLEQQPSPEVKMIMQVHDELVFEVHADAVEAACAQIRALMEGS 908 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPL+V+I V +NW + Sbjct: 909 ----MKLDVPLRVDIGVGDNWDQ 927 >gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13] gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13] Length = 914 Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust. Identities = 363/973 (37%), Positives = 558/973 (57%), Gaps = 70/973 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P AI GF NML +L +K+ ++ A IFD Sbjct: 5 LLLVDGSSYLYRAYHALPDL-RNSAGEPTGAIYGFLNMLRRL----QKDYPTAYRACIFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFRN++Y +YKANR +P+ L+ Q + G P ++++G EADD+I T Sbjct: 60 AKGKTFRNDLYQEYKANRAAMPDDLVEQTGHILELVDMLGWPILQVEGVEADDVIGTLAV 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++GF + + DKD+ QLV L +T+ E +D E VIKK+G+PPE++V +L Sbjct: 120 KAHEDGFDTIVSTGDKDMSQLVDDKVTLVNTMNNEVLDREGVIKKFGVPPERIVDYLSLV 179 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DN+PG+ +G KTA L +Y L+ ++ NA I EN+ + + + +L Sbjct: 180 GDTSDNVPGVAKVGPKTAVKWLTQYHTLDGVIENAQNIG-GAVGENLRQSLDWLPQAHEL 238 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 V +RT+ +P + +E S LK E T+ + + + Sbjct: 239 VRIRTNC--ELPDKFASIE-------TSLLKKPENTEGLKKAFERFGF------------ 277 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 K A E R T K + +L D++ K S + +N+ Sbjct: 278 -----KSWAKELNAARQETPKAAGQIALFDESE----------------DKKSGF-VNDK 315 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y ++ K +++W++K++ + T ++D ++K + I++S Sbjct: 316 EYETVLTEKQLEKWLEKIDKADLTAIDTETTSLDVMNAKLVGISLSIEPG--------HA 367 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 +I L+ H+ + S + + +L LK + EN K+G N+KYD VL YGI ++G Sbjct: 368 AYIPLAHHSMEQS--EQLPLQSVLDKLKPWLENPKKHKVGQNLKYDSHVLANYGIRLQGI 425 Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 D +L SYVL+S R HD+ S+++++L Y + +I S I D+I+ +A Sbjct: 426 VHDTLLESYVLESHRR-HDMDSLSERFLDYKPVSYTDICGKGASQIGFDEIAIDVATHYA 484 Query: 543 IENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V LQL + P+L + L +YE+++ P V+ +ME G+ ID D L S E Sbjct: 485 AEDADVTLQLHQSMWPRLKENDGLRFIYEKIEIPTSIVLQKMERNGVLIDVDKLNVQSRE 544 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + + SL+EN Y +G+ FNL+SPKQLG++LF KLK P KT +G T+ + LE++ Sbjct: 545 LGVKMDSLQENAYVTAGQPFNLNSPKQLGELLFDKLKLPMIKKTPSGAPSTSEEVLEKL- 603 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K IL++R +SK+K+TY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 604 AEDFPLPKIILDYRGMSKLKTTYTDKLPRMVNPETGRVHTNYAQAVAVTGRLASNDPNLQ 663 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+++ G++IR AFI+ P K+ISADYSQIELRI+AH++ L + F + D+HR Sbjct: 664 NIPIRSEEGRRIREAFIASPGNKIISADYSQIELRIMAHLSDDASLLKAFHDGQDVHRAT 723 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A+EIF + +V+ RR+AK INF +IYG+S F +A+ L I R++A +YI RYF R+PG Sbjct: 724 ASEIFDITPLEVTSDQRRYAKVINFGLIYGMSAFGVASNLGISRTDAKNYIDRYFERYPG 783 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+++T+ R+ GYVET+FGRR+ EINSP R ERAAINAP+QG+AADI + Sbjct: 784 VARYMDETRQLAREQGYVETVFGRRLWLPEINSPNGPRRQAAERAAINAPMQGTAADIIK 843 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE KL +K+++Q+HDELV +VPE+E+ + + M + L+VP Sbjct: 844 LSMIAVQDWLEKEKLDSKLIMQVHDELVLDVPEKELVLVREKLPELMAQVA----RLKVP 899 Query: 962 LKVNIKVSNNWQE 974 L + V +NW + Sbjct: 900 LIAEVGVGDNWDQ 912 >gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256] Length = 933 Score = 615 bits (1586), Expect = e-173, Method: Compositional matrix adjust. Identities = 360/983 (36%), Positives = 543/983 (55%), Gaps = 62/983 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P L+ G P A+ G NML L+ ++ A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYIAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D P TFR+ +Y DYKANRP + + L Q+ + A GI + I G EADD+I T Sbjct: 56 VDAPGKTFRDALYADYKANRPSMADDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCLQ 183 A +G +VTI + DKD QLV P L +T+ ++D + VI K+G+ P+++V L Sbjct: 116 ALQAAADGLSVTISTGDKDFAQLVRPGIELVNTMSGSRMDSDAAVIAKFGVRPDQIVDLL 175 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD++DN+PG+ G KTAA L EY +L+ ++ NA +IK K +N+ L+ Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-DNLRAALPRLPLN 234 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 R+LV ++TDV + L L + N L FT+ + + EPV Sbjct: 235 RELVTIKTDVTLASGPRALDLREPNTETLAVLYARYGFTQALRELGGASVQSGLLSEPVA 294 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 L + TE R + + F S P +E LS Sbjct: 295 LGAAAATAR-----TEPGR---ARGTGFVS------------GPVNAAVELDPALSA--- 331 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD----- 418 +Y I+ + + W+ +L G +F TD++D + I ++++ K Sbjct: 332 -PGAYETILTQEQLDSWIAQLRAAGQFAFDTETDSLDPLQADLIGLSVAAEPGKAAYLPF 390 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 +F + +D + L+ L + K+G + KYD V+ R Sbjct: 391 GHNFPGAPVQLDRT---------------HALAQLAPLLTDPAVRKVGQHGKYDLHVMRR 435 Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 +G+ + G+ +D +L S+VL+SG + HD+ S+A+++L Y +++ IP +IS Sbjct: 436 HGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQIPFAQIS 495 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 +A E++++ L+L +L PKL E L VY ++ P++DV++++E G+ +D Sbjct: 496 LDDATRYAAEDADITLRLHHVLGPKLAAEPGLERVYRDIEMPLVDVLARIEANGVCVDAA 555 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L++ SA++SK +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T Sbjct: 556 ELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTN 615 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + LE I + + + ILE+R L+K++STY D LP I+ ++ RVHT Y A TGRL Sbjct: 616 EEALEAI-ADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRL 674 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH++ L F + Sbjct: 675 SSSDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFAS 734 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 D+HR AAE+FG I+ VS RR AK INF ++YG+S F LA QL I R EA DYI Sbjct: 735 GTDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIA 794 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF R+PG+ +++E T+ R GYVET+FGRR++ D IN+ R ERAAINAP+Q Sbjct: 795 LYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQ 854 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI +RAM+ V + DH KM+LQ+HDELVFE + + T + M A Sbjct: 855 GTAADIIKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMASAA- 913 Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976 LRVPL V+ V ++W + + Sbjct: 914 ---ELRVPLVVDSGVGDDWDQAH 933 >gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] Length = 926 Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust. Identities = 375/991 (37%), Positives = 552/991 (55%), Gaps = 84/991 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A P L+ G P A+ G NM+ +L +K+ S Sbjct: 1 MDTTTPLILVDGSSYLYRAYHALPPLTNSK-GKPTGAVKGVINMMRRL----QKDYPDST 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD TFR+EIY +YKANRP +P+ L Q+ + +A G+P + I G EADD+ Sbjct: 56 HVVVFDAKGKTFRDEIYTEYKANRPPMPDDLREQIAPIHQIIEAMGMPMLIIDGVEADDV 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T A V I + DKD+ QLV+ L +T+ +D VI+K+GIPPE ++ Sbjct: 116 IGTLAVQATAAKQPVVISTGDKDIAQLVNEHITLINTMNNSTMDRAGVIEKFGIPPELII 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILINASRIKQKKRRENI 233 AL GD DNIPG+PG+G KTA LLQ Y NL+++ A R K + Sbjct: 176 DYLALLGDKSDNIPGVPGVGEKTALGLLQGLGSLDDIYANLDDVAGLAFR-GAKTMLPKL 234 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 L+ E A LS +L ++TDV + + L L + + L+S K +EF I+ T Sbjct: 235 LDNKELAYLSYQLATIKTDVEMPVHLSELKNAEPDKAALLSLFKHMEFKTWIDEGQTNSQ 294 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 ++ N + + E G+ + D+ +K Sbjct: 295 TNS-NTKAAAASKSPVEQDGL-VAAPADKPAVVK-------------------------- 326 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 Y ++ +D+ W++K+++ + T ++D +K + I++ST Sbjct: 327 -------------DYQIVLTEQDLATWIEKIKSADLVAVDTETTSLDYMRAKLVGISLST 373 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKY 471 E +I + D G L E L LK + E+ F K+G N+KY Sbjct: 374 APG--------EACYIPFA----HDYMGAPEQLQPEFALEKLKPYLEDPAFPKVGQNLKY 421 Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK------SR 524 D VL ++GIS+RG D ML SYVLDS S HD+ S+A L+Y +E +K Sbjct: 422 DMSVLAQHGISLRGITFDTMLESYVLDSVASRHDMDSLA---LNYLGEETIKFADVAGKG 478 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQM 583 + + ++++ Q +A E++++ L+L L P++ E L V+E ++ P++ V+S++ Sbjct: 479 AAQLTFNQVALDQAGPYAAEDADITLRLHQTLWPRVAAEPTLTKVFEEIELPLVPVLSRI 538 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E TG +D LL Q S E+S L LE ++L+G++FNL+SPKQLG+ILF KL+ P Sbjct: 539 ERTGALVDDTLLFQQSQELSARLGELETEAWELAGQQFNLASPKQLGEILFEKLQIPVLK 598 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KT G T + L+++ D P+ K +LE R L+K+KSTY D LP IN T R+HT Y Sbjct: 599 KTAKGAPSTKEEVLQELAL-DYPLPKVLLEHRGLAKLKSTYTDKLPTMINSVTGRIHTSY 657 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 + T TGRL+S +PNLQNIPI++ G+++R+AF++ P KL++ADYSQIELRI+AH+++ Sbjct: 658 HQSGTATGRLSSSDPNLQNIPIRSAEGRRVRQAFVAAPGCKLVAADYSQIELRIMAHLSE 717 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L F DIHR AAE+FGV E+V+ RR AK INF +IYG+S F LA QL I Sbjct: 718 DPSLLAAFSAGQDIHRATAAEVFGVENEEVTIDQRRSAKAINFGLIYGMSAFGLARQLGI 777 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 R +AA+YI+ YF R+PG+ Y+ ++ + G+VET+FGRR++ EIN+ R Sbjct: 778 NRKQAAEYIELYFTRYPGVQNYMNNIRHSAAEQGFVETVFGRRLYLPEINASNGMRRQAA 837 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER AINAP+QG+AADI + AMI+VH LE L +K+++Q+HDELV EVPE E+ + Sbjct: 838 ERTAINAPMQGTAADIIKLAMINVHNWLETSDLTSKIIMQVHDELVLEVPESEMEEVQKG 897 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME A L VPL V+I V +NW E Sbjct: 898 LNDLMESAA----ELLVPLVVDIGVGDNWDE 924 >gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] Length = 931 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 367/984 (37%), Positives = 551/984 (55%), Gaps = 73/984 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRAF+A P D +P NA+ G NML +++ + IA V Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I+G EADD+I T Sbjct: 61 VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A ++G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L + + I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLSQLYDHLDDIAALSFRGSKTMAKKLVDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + E L+ + N LI L F +N + Sbjct: 241 DNALLSYQLATIKLDVALQETPESLLKTEPNKDELIKLYGQLAFKSWLNELL-------- 292 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 G + ++ D +TS S S S+IN+ Sbjct: 293 -------------EGGTGV---VEADEKAQTSVRSGASPVESEINN-------------- 322 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + I+ Y I + W+ KL+ +F TD++D + + ++ + + Sbjct: 323 -AAANIDRSQYQTIFDQATFDIWLDKLKASELFAFDTETDSLDYMVANLVGLSFAVAEG- 380 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476 E ++ ++ H D+ L +E +L+ LK E++ K+G N+KYD VL Sbjct: 381 -------EAAYVPVA-HDYLDA--PEQLDREWVLAQLKPLLEDDTKAKVGQNLKYDASVL 430 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ +++ K+ + ++ Sbjct: 431 ARYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLTFNQ 490 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591 I ++ +A E+++V L+L L + EKL +Y+ ++ P++ V+S+ME TG+ ID Sbjct: 491 IDLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLID 550 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L S EI+ L LE+ Y+++G+ FN++SPKQL ILF ++ P KT +G Sbjct: 551 DMKLSAQSQEIAVRLGELEQKAYEIAGQPFNMNSPKQLQTILFEQMGLPVIKKTPSGTPS 610 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L+++ D P+ I+E+R L+K+KSTY D LP IN T RVHT Y A T TG Sbjct: 611 TAEEVLQELAL-DYPLPSVIMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATG 669 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L F Sbjct: 670 RLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAF 729 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DIH AAEI GV+IE+VS + RR AK +NF +IYG+S F LA QL IPR EA Y Sbjct: 730 QQGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAY 789 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + +YF R+PG+ +Y+E T++ Q+GYVETIFGRR+H EI S R ERAAINAP Sbjct: 790 MDKYFERYPGVMQYMEDTRSNAAQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAP 849 Query: 892 IQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 +QG+AADI ++AM+ V + + E+ K+L+Q+HDELVFEV E +T + ME Sbjct: 850 MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESCLTEIESKVQQLMES 909 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL +NW + Sbjct: 910 AA----QLNVPLVAEAGHGDNWDQ 929 >gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100] gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris] Length = 927 Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust. Identities = 358/978 (36%), Positives = 540/978 (55%), Gaps = 58/978 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P L+ G P A+ G NML L+ ++ A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYVAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D P TFR+++Y DYKANRP +P+ L Q+ + A GI + I G EADD+I T Sbjct: 56 VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-EHVIKKWGIPPEKMVCLQ 183 +G AVTI + DKD QLV P L +T+ ++D E VI K+G+ P ++V L Sbjct: 116 ALQGASDGLAVTISTGDKDFAQLVRPGVELVNTMSGSRMDSDEAVIAKFGVRPNQIVDLL 175 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD++DN+PG+ G KTAA L EY +L+ ++ NA +IK K EN+ L+ Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-ENLRAALPRLPLN 234 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 R+LV ++TDV + L L + N L FT+ + + P+ Sbjct: 235 RELVTIKTDVVLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAEAGGLTAPMA 294 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 + TE R + + F S P +E LS Sbjct: 295 V-----------ARTEPGR---ARGTGFVS------------APAAAPVELGPALSA--- 325 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 Y I+ + W+ +L G +F TD++DA + I ++++ + Sbjct: 326 -PGQYETILTQAQLDSWIARLRAAGQFAFDTETDSLDALQANLIGLSVA--------AEP 376 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 + ++ H + + T + L+ L + K+G + KYD V+ R+GI++ Sbjct: 377 GQAAYLPFG-HDFPGAPAQLDRT-QALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGIAL 434 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 G+ +D +L S+VL+SG + HD+ S+A+++L Y ++I I ++S Sbjct: 435 AGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDICGKGAKQIKFAQVSLEDAT 494 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +A E++++ L+L +L +L E L VY ++ P++ V+ ++E G+ +D L++ Sbjct: 495 RYAAEDADITLRLHQVLGKRLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQ 554 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 SA++SK +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T + LE Sbjct: 555 SADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALE 614 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 I + + + IL++R L+K++STY D LP I+ ++ RVHT Y A TGRL+S +P Sbjct: 615 AI-ADQHELPRVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDP 673 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+T+ G++IRRAF++P +KLI+ DYSQIELRI+AH++ L FE+ D+H Sbjct: 674 NLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVH 733 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R AAE+FG I+ VS RR AK INF ++YG+S F LA QL I R EA DYI YF R Sbjct: 734 RATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSR 793 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ +++E T+ R GYVET+FGRR++ D IN+ R ERAAINAP+QG+AAD Sbjct: 794 YPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAAD 853 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I +RAM+SV + DH M+LQ+HDELVFE + + T + M A +L Sbjct: 854 IIKRAMVSVDGWIADHAQRALMILQVHDELVFEADADFVDTLLAEVTARMSAAA----SL 909 Query: 959 RVPLKVNIKVSNNWQEEN 976 RVPL V+ V +NW E + Sbjct: 910 RVPLVVDSGVGDNWDEAH 927 >gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541] gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541] Length = 934 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 373/986 (37%), Positives = 542/986 (54%), Gaps = 74/986 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYSP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFESYKSHRPPMPDDLRAQIAPLHEMVEAMGLPLLVVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +G V I + DKD+ QLV P L +T+ + E V K+G+PP ++ Sbjct: 121 LAREASSKGMPVLISTGDKDMAQLVEPNITLINTMTNTILGPEEVEAKYGVPPSLIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G+LE I + I K + E Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALALLQGIGSLEAIYNDLEAIAPLGFRGSKTLAPKMAENR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + P E L + + + +L EF + + V DA Sbjct: 241 ELAFLSYQLATIKTDVELEKPCEELKVSELDADKLHQLFSRYEFKRWLVDVENGSWMDAK 300 Query: 298 NIEP--VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 +P T ENK A S+ T L E Sbjct: 301 GAKPSKAAESYRTPENKPAA--------------------------KSKPTAPTLSAE-- 332 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +Y I++ ++ WV+KL +F TD++D ++ + ++ + ++ Sbjct: 333 -----------NYQTILDKAELALWVKKLSEASLFAFDTETDSLDTQEARLVGMSFA-IE 380 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + ++D V S D ++++ +K ENE KIG N+KYD V Sbjct: 381 AGHAAYLPIGHDYLDAPVQLSLD---------DVIAVMKPILENEKIGKIGQNLKYDAEV 431 Query: 476 LHRYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 L YGI ++G D ML SYVL+S G HD+ S+A + L++ + +EI K + Sbjct: 432 LENYGIELKGIAFDTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEIAGKGKKQLT 491 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGI 588 ++I Q +A E+++V L L L P+L E KL HV++ ++ P++ V+ +ME G+ Sbjct: 492 FNQIPLEQAANYAAEDADVTLLLHQALFPQLEEEPKLAHVFQNIEMPLVPVLVRMERKGV 551 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ID L S I+ L LE+ ++L+GE+FNL+SPKQL ILF KL+ P KT +G Sbjct: 552 LIDAPTLAAQSKIITARLAELEKQAFELAGEEFNLASPKQLQTILFEKLQLPVIKKTPSG 611 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + LE++ ++ + K +LE R L+K+KSTY D LP IN +T RVHT Y A T Sbjct: 612 AASTNEEVLEELAL-NHELPKLLLEHRSLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 670 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++T+ G++IR+AFI+ K+++ADYSQIELRI+AH+++ L Sbjct: 671 ATGRLSSRDPNLQNIPVRTEEGRRIRQAFIARKGYKVMAADYSQIELRIMAHLSQDKGLL 730 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIH+ AAE+FGV +++V+ RR AK INF +IYG+S F LA QL IPR EA Sbjct: 731 TAFAEGKDIHKATAAEVFGVPLDQVTSDQRRSAKAINFGLIYGMSAFGLARQLGIPRGEA 790 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ Y+E T+ + GYVET+ GRR++ +I S R ER AI Sbjct: 791 QRYMDLYFERYPGVLRYMENTRLQASEQGYVETLEGRRLYLADIKSSNGMRRKAAEREAI 850 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI ++AMI+V L+ K ML+Q+HDELVFEV E E+ + M Sbjct: 851 NAPMQGTAADIIKKAMIAVDHWLQTEKPEADMLMQVHDELVFEVKESELEKVQAKVQELM 910 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E++ + L VPLKV + V NW E Sbjct: 911 EQS----MKLDVPLKVEVGVGMNWDE 932 >gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016] gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016] Length = 957 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 365/983 (37%), Positives = 548/983 (55%), Gaps = 71/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRAF+A P D +P NA+ G NML +++ + IA V Sbjct: 32 ENPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 86 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I+G EADD+I T Sbjct: 87 VFDAKGKTFRDDMYPEYKANRPPMPDELRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGT 146 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A ++G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 147 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVIEKFGIPPELIIDYL 206 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L + + I K + +++ Sbjct: 207 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLSQLYDHLDDIAALSFRGSKTMAKKLVDNK 266 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + E L+ + N LI L F +N + Sbjct: 267 DNALLSYQLATIKLDVALQETPESLLKTEPNKDELIKLYGQLAFKSWLNELL-------- 318 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 G + ++ D +TS S S S+IN+ Sbjct: 319 -------------EGGTGV---VEADEKAQTSVRSGASPVESEINN-------------- 348 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + I+ Y I + W+ KL+ +F TD++D + + ++ + + + Sbjct: 349 -AAANIDRSQYQTIFDQATFDIWLDKLKASELFAFDTETDSLDYMVANLVGLSFA-VAEG 406 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D +D +L+ LK E++ K+G N+KYD VL Sbjct: 407 EAAYVPVAHDYLDAPEQLDRDW---------VLAQLKPLLEDDTKAKVGQNLKYDASVLA 457 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ +++ K+ + ++I Sbjct: 458 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLTFNQI 517 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 ++ +A E+++V L+L L + EKL +Y+ ++ P++ V+S+ME TG+ ID Sbjct: 518 DLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDD 577 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L S EI+ L LE+ Y+++G+ FN++SPKQL ILF ++ P KT +G T Sbjct: 578 MKLSAQSQEIAVRLGELEQKAYEIAGQPFNMNSPKQLQTILFEQMGLPVIKKTPSGTPST 637 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ I+E+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 638 AEEVLQELAL-DYPLPSVIMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGR 696 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L F+ Sbjct: 697 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQ 756 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH AAEI GV+IE+VS + RR AK +NF +IYG+S F LA QL IPR EA Y+ Sbjct: 757 QGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQTYM 816 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 +YF R+PG+ +Y+E T++ Q+GYVETIFGRR+H EI S R ERAAINAP+ Sbjct: 817 DKYFERYPGVMQYMEDTRSNASQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPM 876 Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + + E+ K+L+Q+HDELVFEV E +T + ME A Sbjct: 877 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESCLTEIESKVQQLMESA 936 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL +NW + Sbjct: 937 A----QLNVPLVAEAGHGDNWDQ 955 >gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB] gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB] Length = 928 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 366/983 (37%), Positives = 554/983 (56%), Gaps = 74/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLLAQYNP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK+G +V I + DKD+ QLV+P L +T+ + E V +K+G+PP ++ Sbjct: 121 LALEAEKKGLSVLISTGDKDMAQLVTPAITLINTMSNTILGPEEVEQKYGVPPALIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 A+ GDS DNIPG+PG+G KTA LLQ G+++ I N ++ K + + Sbjct: 181 AMMGDSSDNIPGVPGVGEKTAQALLQGLGSMQTIYDNLDKVADLGFRGAKTMATKLEQNR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++TDV + +P E L + + + L + EF + ++ + Sbjct: 241 DVAFLSYQLATIKTDVELALPCEELNVTEPDVEALQTLFSRYEFKRWLSDL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 G ++++ + T +LSD+ + + ++ Sbjct: 292 -------------QDGKWLQSKKN-----NTQAQKALSDEPAVV-------------VET 320 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 S P ++ Y I++ + W++KL+ +F + TD +D + + I+ + + Sbjct: 321 SSVLP--SEGYVTILDQEHFDSWLEKLKNSEVFAFDLETDALDTLSANIVGISFA-VAPG 377 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D + + +L+ LK E+E+ K+G N+KYD+ VL Sbjct: 378 EAAYLPVAHDYLDAPDQLDRAA---------VLAQLKPLLEDENAWKVGQNLKYDRGVLK 428 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 Y I + G + D ML SY+L+S HD+ S+A +WL++ T +EI K+ + ++I Sbjct: 429 NYDIELAGIKFDAMLESYILNSVVGKHDMDSLAARWLNHKTVTFQEIAGKGKNQLTFNQI 488 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V LQL L + P+L E V+E+++ P++ V+S++E G+ IDQ Sbjct: 489 ALEQAAHYAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLTVISRIERNGVLIDQ 548 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L Q S E++ L LE ++L+GE FNLSS KQL ILF K KT G T Sbjct: 549 SILAQHSKELTARLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPST 608 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + L ++ D P+ K ILE R LSK+KSTY D LP IN + RVHT Y A T TGR Sbjct: 609 SEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPISGRVHTSYHQAVTATGR 667 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AF++ ++++ADYSQIELRI+AH+++ L F Sbjct: 668 LSSADPNLQNIPVRNDEGRRIRQAFVAAKGHRIVAADYSQIELRIMAHLSQDKGLLDAFA 727 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR A+E+FGV ++KVS + RR AK INF +IYG+S F L+ QL I EA Y+ Sbjct: 728 QGEDIHRATASEVFGVALDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 787 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ Y+E T+ NGYVET+ GRR+ +I S + R ERAAINAP+ Sbjct: 788 DLYFERYPGVLRYMENTRQLAASNGYVETLEGRRLWLPDIKSSNAIRRKAAERAAINAPM 847 Query: 893 QGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAMI+V + LE A +M++Q+HDELVFEV E + ASQ I ME + Sbjct: 848 QGTAADIIKRAMIAVDEWLEQQNDNAVRMIMQVHDELVFEVKAEAVEEASQKIRALMEGS 907 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPL V + V NNW E Sbjct: 908 ----VQLDVPLLVEVGVGNNWDE 926 >gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] Length = 927 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 358/978 (36%), Positives = 540/978 (55%), Gaps = 58/978 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P L+ G P A+ G NML L+ ++ A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLTNAQ-GEPTGALFGVVNMLRATLKER-----PAYVAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D P TFR+++Y DYKANRP +P+ L Q+ + A GI + I G EADD+I T Sbjct: 56 VDAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTL 115 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-EHVIKKWGIPPEKMVCLQ 183 +G AVTI + DKD QLV P L +T+ ++D E VI K+G+ P ++V L Sbjct: 116 ALQGASDGLAVTISTGDKDFAQLVRPGVELVNTMSGSRMDSDEAVIAKFGVRPNQIVDLL 175 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD++DN+PG+ G KTAA L EY +L+ ++ NA +IK K EN+ L+ Sbjct: 176 ALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIG-ENLRAALPRLPLN 234 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 R+LV ++TDV + L L + N L FT+ + + P+ Sbjct: 235 RELVTIKTDVVLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAEAGGLTAPMA 294 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 + TE R + + F S P +E LS Sbjct: 295 V-----------ARTEPGR---ARGTGFVS------------APAAAPVELDPALSA--- 325 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 Y I+ + W+ +L G +F TD++DA + I ++++ + Sbjct: 326 -PGQYETILTQAQLDSWIARLRAAGQFAFDTETDSLDALQANLIGLSVA--------AEP 376 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 + ++ H + + T + L+ L + K+G + KYD V+ R+GI++ Sbjct: 377 GQAAYLPFG-HDFPGAPAQLDRT-QALAQLAPLLTDPAVRKLGQHGKYDLHVMRRHGIAL 434 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 G+ +D +L S+VL+SG + HD+ S+A+++L Y ++I I ++S Sbjct: 435 AGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDICGKGAKQIKFAQVSLEDAT 494 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +A E++++ L+L +L +L E L VY ++ P++ V+ ++E G+ +D L++ Sbjct: 495 RYAAEDADITLRLHQVLGKRLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQ 554 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 SA++SK +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T + LE Sbjct: 555 SADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEALE 614 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 I + + + IL++R L+K++STY D LP I+ ++ RVHT Y A TGRL+S +P Sbjct: 615 AI-ADQHELPRVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAATGRLSSSDP 673 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+T+ G++IRRAF++P +KLI+ DYSQIELRI+AH++ L FE+ D+H Sbjct: 674 NLQNIPIRTEDGRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVH 733 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R AAE+FG I+ VS RR AK INF ++YG+S F LA QL I R EA DYI YF R Sbjct: 734 RATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSR 793 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ +++E T+ R GYVET+FGRR++ D IN+ R ERAAINAP+QG+AAD Sbjct: 794 YPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAAD 853 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I +RAM+SV + DH M+LQ+HDELVFE + + T + M A +L Sbjct: 854 IIKRAMVSVDGWIADHAQRALMILQVHDELVFEADADFVDTLLAEVTARMSAAA----SL 909 Query: 959 RVPLKVNIKVSNNWQEEN 976 RVPL V+ V +NW E + Sbjct: 910 RVPLVVDSGVGDNWDEAH 927 >gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131] gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131] Length = 930 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 373/987 (37%), Positives = 559/987 (56%), Gaps = 80/987 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFESYKSHRPPMPDDLRAQIAPLHEMVEAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A ++G V I + DKD+ QLV P L +T+ + + V +K+G+PPE ++ Sbjct: 121 LACEASRKGMPVLISTGDKDMAQLVEPNITLINTMNNTILGPDEVKEKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G+LE I + I K + E Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALALLQGIGSLEAIYNDLEAIAPLGFRGSKTLAPKMAENR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++TDV + E L + + +L EF + + A Sbjct: 241 DVAFLSYQLATIKTDVELEKTCEELQVAQPDVDKLHQLFSRYEFKRWL-----------A 289 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++E N T +G + ++ K S + S K ++ P Sbjct: 290 DVE------NGTWMEG--------KGSSAKPSPTPAAS--PVKPSNPTVPT--------- 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + ++Y I+ D+++WV+KL +F TD++D ++ + + Sbjct: 325 -----LCAENYQTILEKADLERWVEKLSKASLFAFDTETDSLDTQEARLVGM-------- 371 Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 SF +E ++ L H D+ + L +E+L +K E+E+ LKIG N+KYD Sbjct: 372 ---SFAIEPGHAAYLPLG-HDYLDAPVQLPL-EEVLELMKPILESENILKIGQNLKYDAE 426 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528 VL Y I ++G D ML SYVL+S G HD+ S+A + L++ + +EI K + Sbjct: 427 VLENYDIELKGIGYDTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEIAGKGKKQL 486 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587 ++I+ + +A E+++V L L L P+L E KL H+++ ++ P++ V+ +ME G Sbjct: 487 TFNQIALEEAANYAAEDADVTLLLHQALYPQLEAEPKLNHIFQNIEMPLVPVLVRMERKG 546 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + ID ++L S I+ L LE+ ++L+GE+FNL+SPKQL ILF KL+ P KT + Sbjct: 547 VLIDANVLAAQSKVITARLAELEKEAFELAGEEFNLASPKQLQTILFEKLQLPVIKKTPS 606 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + LE++ ++ + K +LE R L+K+KSTY D LP IN RTQRVHT Y A Sbjct: 607 GAASTNEEVLEELAL-NHALPKLLLEHRSLAKLKSTYTDKLPLMINPRTQRVHTSYHQAV 665 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIP++T+ G++IR+AFI+ K+++ADYSQIELRI+AH+++ L Sbjct: 666 TATGRLSSRDPNLQNIPVRTEEGRRIRQAFIAREGYKVMAADYSQIELRIMAHLSQDKGL 725 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F DIH+ AAE+FGV +E+V+ RR AK INF +IYG+S F LA QL IPR E Sbjct: 726 LTAFAEGKDIHKATAAEVFGVPLEQVTSDQRRSAKAINFGLIYGMSAFGLARQLGIPRGE 785 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A Y+ YF R+PG+ Y+E T+ + GYVET+ GRR++ +I S R ER A Sbjct: 786 AQRYMDLYFERYPGVLRYMENTRLQASEQGYVETLEGRRLYLADIKSSNGMRRKAAEREA 845 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AADI ++AMI+V L+ K ML+Q+HDELVFEV E E+ + Sbjct: 846 INAPMQGTAADIIKKAMIAVDNWLQTEKPHADMLMQVHDELVFEVKESELERVQAQVQSL 905 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME++ + L VPLKV++ + +NW E Sbjct: 906 MEQS----MKLDVPLKVDVGIGDNWDE 928 >gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895] gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895] Length = 928 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 364/982 (37%), Positives = 557/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-----KQKKRRENILEY-A 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + + +I + K LE Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + + L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELSCDQLEVQQPAAEELLGLFKKYEFKRWTTDVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q S + D+T + + Sbjct: 301 GAKPAA------------------------KPQESIVIDETPDVPATA------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ D+Y I++ + ++ W++ L+ +F TD++D + + ++ + ++ Sbjct: 325 -----LSYDNYVTILDEETLESWIETLKKAPVFAFDTETDSLDNHAANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E K+G N+KYD+ VL Sbjct: 379 VAAYVPVAHDYLDAPDQISRERA---------LELLKPLLEDEKARKVGQNLKYDRGVLQ 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQYKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S EI+ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEEITLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P + SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPQDYVIASADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLESVTAEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKERGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V K L+D + +M++Q+HDELVFEV ++++ S+ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDKWLQDEQPRVRMIMQVHDELVFEVHKDDLDVVSKKI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VPL V + NW + Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926 >gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 942 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 372/991 (37%), Positives = 577/991 (58%), Gaps = 73/991 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 ++ L LVDGSS++YRAF+A P L R G P AI G NM+ + +R E A H A Sbjct: 3 KHRLLLVDGSSYLYRAFHAMPDL-RNGAGEPTGAIYGMVNMM----RRTRSELKADHIAC 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E+Y +YKA+R +PE L+ Q+ + +A G P + + G EADD+I T Sbjct: 58 VFDAKGKTFRDEMYSEYKAHRSPMPEDLVKQIEPIHAMVKALGWPVLMVGGVEADDVIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G+ I + DKDL QLV+ + L +T+ EK+DIE V +K+G+PPE +V Sbjct: 118 LACQATQAGWETIISTDDKDLAQLVNSSVTLINTMTNEKLDIEGVKEKFGVPPELIVDYL 177 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 ++ GD++DN+PG+P G KTA L E+G+L+N++ NA ++K EN+ + + Sbjct: 178 SIIGDAVDNVPGVPKAGPKTANKWLAEFGSLDNLMANADQVK-GVVGENLRASLDWLPQA 236 Query: 244 RKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVAT--TYDCDAAN 298 +L+ ++TD ++ +P L+ L + + P L + F + V T D A+ Sbjct: 237 HQLITVKTDCDLSPHLPGLDDLHAKSEDAPLLRELFERYAFKTWLRDVEKQLTSPADKAS 296 Query: 299 IEPVVLDIN----TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 E V D+ T +G E + I ++ +LS +T +S+ T +ER Sbjct: 297 -EVVTFDLAGSPLTPSERGF---DEEKKTRVIVSAPTKNLSQETR--DSQDT-----IER 345 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 Y IV+ +++W++K+E+ + T ++DAF ++ + I++S Sbjct: 346 ------------RYECIVDIVGLEKWLKKIESSQLTAVDTETTSLDAFAAELVGISLSVK 393 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 E +I ++ G+ L ++ +L+ +K + E+ LK+G N+KYD Sbjct: 394 PG--------EACYIPVA-----HRNGEAQLDRDLVLARMKSWLESATHLKVGQNLKYDS 440 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 + YGI+++G D +L SYVL+S H++ S+A++ L +E+ I Sbjct: 441 HIFANYGITLKGVVFDTLLESYVLES-HLPHNMDSLAERHLGMKTIRYEEVCGKGVHQIG 499 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGI 588 D++ ++A E++++ L+L L L P++ LL+VYE+++ P + V+ ME GI Sbjct: 500 FDQVDLKIATDYAAEDADITLRLHLELWPQIQESPGLLYVYEKVEMPAMRVLGIMERNGI 559 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +ID LL + ++ K LL LE I+ L+G+ FN+ SPKQ+ +ILF +L+ P KT +G Sbjct: 560 RIDSALLAKQGQQVGKRLLELEGEIHKLAGQPFNIQSPKQIAEILFGQLELPVIKKTPSG 619 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L+++ D P+ IL++R L+K+ STY + LP + +T RVHT +S A+ Sbjct: 620 APSTDEEVLQKL-AEDYPLPARILDYRSLAKLMSTYIEKLPRMADPKTGRVHTNFSQATA 678 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS +PNLQNIP++T+ G++IR AFI KL+SADYSQIELRI+AHIA+ L Sbjct: 679 VTGRLASSDPNLQNIPVRTEEGRRIREAFIPAEGCKLLSADYSQIELRIMAHIAEDENLL 738 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F + D+H+ AAEIFGV ++ VS + RR+AK INF +IYG+S F LA L I S A Sbjct: 739 TAFRDGKDVHQATAAEIFGVPLDDVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIECSAA 798 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +YI +YF R+PG+ +Y+E+T+ R+NGYVET+FGRR+ EI R ERAAI Sbjct: 799 QNYIAKYFDRYPGVAQYMERTRLEARENGYVETVFGRRLWSPEIKGSNGPRRQGAERAAI 858 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AAD+ + AMI+V E +L TKMLLQ+HDELVF+VP +EI + Sbjct: 859 NAPMQGTAADLIKLAMIAVEDWFEKEQLKTKMLLQVHDELVFDVPLDEI---------EL 909 Query: 949 EKACLPKI-----NLRVPLKVNIKVSNNWQE 974 +A LP + L+VPL V+I + +NW+E Sbjct: 910 LQAKLPNLMCHVAQLKVPLAVSIGIGDNWEE 940 >gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891] gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891] Length = 931 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 363/983 (36%), Positives = 546/983 (55%), Gaps = 71/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P D +P NA+ G NML +++ + IA V Sbjct: 6 DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LAYQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L+ + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLDKLYENLDDIAPLGFRGSKTMAKKLIDNQ 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A+LS +L ++ DV + E L+ + N LI L F +N + D Sbjct: 241 DNAKLSYELATIKLDVALEETPESLLKAEPNKDELIKLYGQLVFKSWLNEL-----LDGG 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N G+ +E + S+ SS ++ + Sbjct: 296 N--------------GV-VEADEKSGGAAGASKASSGAEMDT------------------ 322 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 S I+ Y I++ W++KL+ +F TD++D + + ++ +T ++ Sbjct: 323 -SAVTIDRSHYDTILDEASFNAWLEKLKAAEVFAFDTETDSLDYMVANLVGLSFAT-EEG 380 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L LK E++ K+G N+KYD VL Sbjct: 381 VAAYVPVAHDYLDAPAQLERDW---------VLEQLKPILEDDAQAKVGQNLKYDASVLA 431 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ ++I K + ++I Sbjct: 432 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 491 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + +A E+++V L+L L + EKL +Y+ ++ P++ V+S++E TG+ ID Sbjct: 492 ELDEASPYAAEDADVTLRLHNRLMENIDQDEKLKAIYQEIEVPLVPVLSRIERTGVLIDD 551 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L S EI++ L LE+ Y+++ ++FN++SPKQL +LF K+ P KT +G T Sbjct: 552 MKLGAQSQEIAQRLDELEQQAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 611 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 612 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGR 670 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AFI+P K+++ DYSQIELRI+AH++ L + F+ Sbjct: 671 LSSTDPNLQNIPIRNEEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLEAFQ 730 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH AAEI G I++VS + RR AK +NF +IYG+S F LA QL IPR EA DY+ Sbjct: 731 QGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYM 790 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 +YF R+PG+ +Y+E T++ + GYVETI+GRR+H EI S R ERAAINAP+ Sbjct: 791 NKYFERYPGVMQYMEDTRSTASEQGYVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPM 850 Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + ++ K+L+Q+HDELVFEV E +T + ME A Sbjct: 851 QGTAADIIKKAMLLVDEWIQTEGDGRVKLLMQVHDELVFEVQESALTEIESKVQELMESA 910 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL +NW + Sbjct: 911 A----ELDVPLVAEAGHGDNWDQ 929 >gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6] gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6] Length = 931 Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust. Identities = 365/983 (37%), Positives = 548/983 (55%), Gaps = 71/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRAF+A P D +P NA+ G NML +++ + IA V Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I+G EADD+I T Sbjct: 61 VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A ++G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L + + I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLSQLYDHLDDIAALSFRGSKTMAKKLVDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + E L+ + N LI L F +N + Sbjct: 241 DNALLSYQLATIKLDVALQETPESLLKTEPNKDELIKLYGQLAFKSWLNELL-------- 292 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 G + ++ D +TS S S S+IN+ Sbjct: 293 -------------EGGTGV---VEADEKAQTSVRSGASPVESEINN-------------- 322 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + I+ Y I + W+ KL+ +F TD++D + + ++ + + + Sbjct: 323 -AAANIDRSQYQTIFDQATFDIWLDKLKASELFAFDTETDSLDYMVANLVGLSFA-VAEG 380 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D +D +L+ LK E++ K+G N+KYD VL Sbjct: 381 EAAYVPVAHDYLDAPEQLDRDW---------VLAQLKPLLEDDTKAKVGQNLKYDASVLA 431 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ +++ K+ + ++I Sbjct: 432 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLTFNQI 491 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 ++ +A E+++V L+L L + EKL +Y+ ++ P++ V+S+ME TG+ ID Sbjct: 492 DLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPVLSRMERTGVLIDD 551 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L S EI+ L LE+ Y+++G+ FN++SPKQL ILF ++ P KT +G T Sbjct: 552 MKLSAQSQEIAVRLGELEQKAYEIAGQPFNMNSPKQLQTILFEQMGLPVIKKTPSGTPST 611 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ I+E+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 612 AEEVLQELAL-DYPLPSVIMEYRGLAKLKSTYTDKLPKMINPHTGRVHTSYHQAVTATGR 670 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L F+ Sbjct: 671 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQ 730 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH AAEI GV+IE+VS + RR AK +NF +IYG+S F LA QL IPR EA Y+ Sbjct: 731 QGKDIHAATAAEIMGVSIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 790 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 +YF R+PG+ +Y+E T++ Q+GYVETIFGRR+H EI S R ERAAINAP+ Sbjct: 791 DKYFERYPGVMQYMEDTRSNAAQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPM 850 Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + + E+ K+L+Q+HDELVFEV E +T + ME A Sbjct: 851 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESCLTEIESKVQQLMESA 910 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL +NW + Sbjct: 911 A----QLNVPLVAEAGHGDNWDQ 929 >gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617] Length = 929 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 362/983 (36%), Positives = 546/983 (55%), Gaps = 73/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYKP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + I G EADD+I T Sbjct: 61 VFDAKGKTFRDELFDAYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLAISGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G AV I + DKD+ QLV+P L +T+ + + V++K+GIPP M+ Sbjct: 121 LALEAEKAGRAVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPSLMIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+ G+G KTA LLQ G ++ I N ++ K + + Sbjct: 181 ALMGDSSDNIPGVAGVGEKTAQALLQGLGGVKEIYDNLDKVATLTFRGAKTMAARLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS KL ++TDV + + + L +E+ L++ K EF + I + Sbjct: 241 EMALLSYKLATIKTDVELELTSDQLTVEEPAVEELLALFKHYEFKRWITDLEDGKWLQGN 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 P + +N+ ++++ TS ++S Sbjct: 301 KGSPSTKKVAAVQNE-------------------PAVAEATSVLSS-------------- 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 D Y I++ W++KL+ +F + TD++D + I ++ +T Sbjct: 328 --------DGYVTILDEDTFTSWLKKLQDSELFAFDLETDSLDTLSANIIGLSFATA-PG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D + ++L+ LK E+ K+G N+K+D+ VL Sbjct: 379 EAAYLPVAHDYLDAPEQLDR---------SDVLARLKPLLEDPQAQKVGQNLKFDRGVLK 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RY I ++G D ML SY L+S HD+ ++A +WL++ T +EI K+ + ++I Sbjct: 430 RYDIELQGIRFDTMLESYALNSVAGRHDMDTLASRWLNHKTVTFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V LQL + + P+L E+ +V+E ++ P++ V+S++E G+ I Sbjct: 490 ALEQAAHYAAEDADVTLQLHVKMWPELEKEQGPKNVFEHVEMPLVPVISRIERNGVLIAP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E+ L LE ++L+GE FNLSSPKQL ILF K KT G T Sbjct: 550 GILATHSQELGSRLAELELKAHELAGEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + L ++ D P+ K ILE R L+K+KSTY D LP IN + RVHT Y T TGR Sbjct: 610 SEEVLAELAL-DYPLPKVILEHRGLAKLKSTYTDKLPLMINPHSGRVHTSYHQTVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AFI+P ++++ADYSQIELRI+AH+++ L F Sbjct: 669 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLSQDKGLLSAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIHR AAE+FGV+++KVS + RR AK INF +IYG+S F L+ QL I EA Y+ Sbjct: 729 SEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ +Y+E T+ Q GYV T+ GRR++ +I + + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDIKASNAMRRKAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAMI+V + LE KM++Q+HDELVFEV + + A I ME + Sbjct: 849 QGTAADIIKRAMIAVDRWLEQQPSPEVKMIMQVHDELVFEVHADAVEAACAQIRALMEGS 908 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPL+V+I V +NW + Sbjct: 909 ----MKLDVPLRVDIGVGDNWDQ 927 >gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146] gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146] Length = 930 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 370/983 (37%), Positives = 547/983 (55%), Gaps = 72/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIIQYQP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIAPLHQMVEAMGLPLLVVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AE G V I + DKD+ QLV+P L +T+ + + V K+G+PP ++ Sbjct: 121 LARRAELAGRHVLISTGDKDMAQLVTPNITLINTMTNTVLGPQEVCDKYGVPPSLIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+PG+G KTA LLQ G+L+ I + R+ K +L Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGIGSLKTIYDDLDRVATLSFRGAKTMGAKLLLNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS L ++TDV + + L ++ + L EF + ++ V Sbjct: 241 EKADLSYLLATIKTDVDLAQGGDDLAIKVLDSETLHQLFSRYEFKRWLSDV--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++ + T + +KI TP L E Sbjct: 292 ------------------------QEGSWLTGATGGRKTRGNKIAD--TPAALAPEVFVT 325 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 L++ + Y I++ ++ + +L GS +F TD++D + + IS D+ Sbjct: 326 LTR-----EGYQTILDEAALEALITRLRQAGSFAFDTETDSLDVLSAN--LVGISCADKP 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + +I L+ H D+ + L ++ +L+ L+ E+E KIG N+KYD V+ Sbjct: 379 G------QACYIPLA-HDYLDA--PHQLDRQYVLARLQPLLEDEGIAKIGQNLKYDIGVM 429 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 RYGI++RG D ML SYVL+S HD+ S++ + L + T +EI K + ++ Sbjct: 430 ARYGITLRGVAFDTMLESYVLNSVAGRHDMDSLSARHLDHKTITFEEIAGKGKGQLTFNQ 489 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQID 591 I Q E+A E+++V LQL L P L E H++ +D P++ V+S+ME TG+ ID Sbjct: 490 IPLEQASEYAAEDADVTLQLHQHLWPMLEGESGPSHIFRDIDMPLVPVLSRMERTGVLID 549 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +L Q S E++ L +LE+ + +GE FNLSS KQL ILF K + P KT G Sbjct: 550 SAILGQHSQELAVRLEALEQQAHSEAGEPFNLSSTKQLQSILFEKQQLPVLKKTPGGAPS 609 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L ++ + + ILE+R L+K+KSTY D LP +N T RVHT Y A T TG Sbjct: 610 TNEEVLVELAEQGYALPQVILEYRTLAKLKSTYTDKLPLMVNPLTGRVHTSYHQAVTATG 669 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP+++D G++IR+AFI+P ++++ADYSQIELRI+AH++ L Q F Sbjct: 670 RLSSSDPNLQNIPVRSDEGRRIRQAFIAPVGSRIVAADYSQIELRIMAHLSGDKGLLQAF 729 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIHR AAE+FG+ +E VS RR AK INF +IYG+S F LA QL I R EA Y Sbjct: 730 AAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMSAFGLARQLNIGRGEAQRY 789 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF R+PG+ Y+E+T+ GYVET+ GRR++ EIN+ R ERAAINAP Sbjct: 790 MDLYFERYPGVLAYMERTRQLASDQGYVETLDGRRLYLPEINARNGMRRKAAERAAINAP 849 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG+AADI +RAMI+V L++ +L +M++Q+HDELVFEVPE ++ + ME + Sbjct: 850 MQGTAADIIKRAMIAVDGWLQETQLEVRMIMQVHDELVFEVPESQVEAVVCQVRVLMENS 909 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 ++L VPLKV+I NW + Sbjct: 910 ----LSLAVPLKVDIGCGENWDQ 928 >gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC 35316] gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316] Length = 930 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 365/982 (37%), Positives = 552/982 (56%), Gaps = 70/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHTMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKMGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVVAKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMATKLQDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L +++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLHVQEPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P T IA++ E D T F Sbjct: 301 GSKPAAKVKET-----IAVDAEEPEDEEAVTLSF-------------------------- 329 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + Y I++ + +W++KL+ +F TD++D + + ++ +T Sbjct: 330 --------EHYETILDESQLVEWIEKLKKAPVFAFDTETDSLDNISANMVGLSFATAPGV 381 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L +K E++ LK+G N+K+D+ +L Sbjct: 382 A-AYVPVAHDYLDAPDQIPRD---------RVLELMKPVLEDDKALKVGQNLKFDRGILQ 431 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+LDS HD+ S++ +WL + T +EI K+ + ++I Sbjct: 432 NYGIELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 491 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + PKL E L+V++ ++ P++ V+S++E G++ID Sbjct: 492 ALEEAGRYAAEDADVTLQLHLKMWPKLQKHEGPLNVFQHIEMPLVPVLSRIERNGVKIDP 551 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E+++ L LE+ ++L+GE FNLSSPKQL ILF K KT G T Sbjct: 552 TVLHNHSGELAQRLTELEQKAHELAGEPFNLSSPKQLQTILFEKQGIKPLKKTPGGAPST 611 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K IL++R L+K+KSTY D LP IN +T RVHT Y A TGR Sbjct: 612 SEEVLEELAL-DYPLPKVILQYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVAATGR 670 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 671 LSSTDPNLQNIPVRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 730 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F L+ QL IPR E+ Y+ Sbjct: 731 EGQDIHRATAAEVFGLPLESVTNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYM 790 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 791 DLYFERYPGVLEYMERTRAQAKEKGYVETLDGRRLYLPDIKSSNAARRAGAERAAINAPM 850 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V LE K KM++Q+HDELVFEV ++++ S+ I ME + Sbjct: 851 QGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVFEVHKDDLEAVSRKIHELMENS- 909 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + L VPL V + NW + Sbjct: 910 ---MTLDVPLLVEVGSGENWDQ 928 >gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501] gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501] Length = 931 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 367/985 (37%), Positives = 540/985 (54%), Gaps = 91/985 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G P A+ G NML L R++ S FAV+FD Sbjct: 23 LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RRQYPDSPFAVVFD 77 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ ++ +YK++RP +P+ L Q+ + + +A G+P + ++G EADD+I T Sbjct: 78 AKGPTFRDALFENYKSHRPPMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 137 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 G V I + DKD+ QLV P L +T+ DIE V K+G+ PE ++ AL Sbjct: 138 QCAALGRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDIEGVKAKFGVGPELIIDFLALM 197 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIK------QKKRRENILEYAET 239 GD +DNIPG+PG+G KTA LL G L+ + + ++ K + E+ + Sbjct: 198 GDKVDNIPGVPGVGEKTACGLLNGIPGGLKGLYEHLDQVAGLPIRGAKSLGAKLEEHRDA 257 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A +S +L ++ DV + + + L+ + + LI+ + LEF + ++ + N Sbjct: 258 AFMSYELATIKIDVALDVEVGDLMPGEPHREALIALYRELEFKQWLDELLREAKAAGENC 317 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 E + +G +I+ E +Q+ +L +Q Sbjct: 318 E--------VQPEGCSIQAE---------AQYETLLEQA--------------------- 339 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 D ++W+ +L+ +F T ++DA ++ + + Sbjct: 340 ----------------DFERWLARLKAAECFAFDTETTSLDAQRAELVGV---------- 373 Query: 420 TSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 SF VE ++ L H+ + L +LS LK E+ KI + KYD VL Sbjct: 374 -SFAVEPGQAAYVPLR-HSYMGVPQQLELDA-VLSALKPLLEDPAKTKICQHGKYDMNVL 430 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 YGI MRG D ML SYVLD+ + HD+ S+A K+L ++I + D+ Sbjct: 431 MHYGIEMRGMAFDTMLESYVLDATATRHDMDSLALKYLGRGTIRFEDIAGKGAKQLTFDQ 490 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 I+ Q +A E+++V L+L L KL LL V ++ P++ V++++E G +D Sbjct: 491 IAIEQAGPYAAEDADVTLRLHQTLLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVD 550 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 LL Q S E+ L+ LE +D++GE+FNL SPKQL IL+ KL P +KT GQ Sbjct: 551 AQLLGQQSVELGDKLVQLEREAFDIAGEEFNLGSPKQLCAILYDKLGCPVISKTAGGQPS 610 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T L ++ D P+ K I++ R LSK+K TY D LP IN RT R+HT Y A T TG Sbjct: 611 TAESVLAELAEQDYPLPKVIMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATG 670 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+T G++IR+AF++ P KL++ADYSQIELRI+AH+A+ L F Sbjct: 671 RLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLLHAF 730 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 +N LD+HR AAE+FGV +E+VS RR AK INF +IYG+S F LA Q+ + R EA +Y Sbjct: 731 QNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAFGLAKQIDVGRKEAQEY 790 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I RYF R+PG+ Y+E+T+ + GYVET+FGRR++ EINS ++R ER AINAP Sbjct: 791 IDRYFARYPGVLAYMERTRTQAAEQGYVETLFGRRLYLPEINSKNGAMRKGAERTAINAP 850 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG+AADI +RAMI+V L+D L +++LQ+HDELV EV E+ + + I M A Sbjct: 851 MQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDELVLEVREDLVEQVREAICPLMSGA 910 Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976 L VPL V V NNW E + Sbjct: 911 A----QLDVPLLVEAGVGNNWDEAH 931 >gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2] gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2] Length = 928 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 362/982 (36%), Positives = 556/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKIGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-----KQKKRRENILEY-A 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + + +I + K LE Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L + L+ K EF + + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVRQPAAEELLGLFKQYEFKRWVTDVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P + I ++TP++ Sbjct: 301 GTKPA--------------------------------AKLQETIVVDETPEE-------- 320 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ ++Y I++ +++W+ KL+ +F TD++D + + ++ + ++ Sbjct: 321 -PATVLSYENYVTILDEATLEEWIAKLKKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D ++D L LK E+E+ K+G N+KYD+ +L Sbjct: 379 VAAYVPVAHDYLDAPDQIARDRA---------LELLKPLLEDENAHKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++ +WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGITFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E +D P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIDMPLVPVLSRVERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S E+++ L LE+ ++++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEELTQRLNELEQKAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP INK+T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ + S+ I ME Sbjct: 849 QGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHKDDLESVSKKIHQLMEN-- 906 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + + VPL V + NW + Sbjct: 907 --ETQIDVPLLVEVGSGENWDQ 926 >gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703] gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703] Length = 931 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 358/983 (36%), Positives = 557/983 (56%), Gaps = 71/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ SH AV Sbjct: 6 DNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYHP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ DYK++RP +P+ L Q+ + +A G P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEDYKSHRPPMPDDLRAQIEPLHNMVKAMGFPLLVVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A EG V I + DKD+ QLV+P L +T+ + + V K+GIPPE ++ Sbjct: 121 LAQQAANEGKPVLISTGDKDMAQLVTPDITLINTMNNTILGPDEVRAKYGIPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + N +I K + ++ Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALFANLDKIAGLSFRGAKTMAAKLEQHK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + E L L + + L EF + + VA+ + + Sbjct: 241 DVAYLSYKLATIKTDVELVLNSEQLTLIEPDTDVLKEMFTRYEFKRWLADVASGQWLNGS 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + V + ++ +D + + S S Sbjct: 301 GRKHV-------QPAQPFVKPSVDDEPKVAASVLS------------------------- 328 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + Y I++ + + W+++++T G +F TD++D + + ++ + ++ Sbjct: 329 -------QEGYVTILDEQTLIAWLERIKTKGVFAFDTETDSLDTISTTLVGVSFA-INAG 380 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + + ++D +D ++L+ LK E+ LKIG N+K+DK V+ Sbjct: 381 EAAYLPLGHDYLDAPEQLDRD---------KVLALLKPVLEDASVLKIGQNLKFDKGVMA 431 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RYGI++RG D ML SYVLDS HD+ S+++++L++ T +EI K+ + ++I Sbjct: 432 RYGITLRGIAFDTMLESYVLDSVAGRHDMDSLSERYLNHKTITFEEIAGKGKNQLTFNQI 491 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q +A E+++V L+L +L KL E L V++ +D P++ ++S+ME G+ ID Sbjct: 492 PLEQAAVYAAEDADVTLRLHQVLSEKLNKEPSLFQVFQDIDMPLVPILSRMERQGVLIDT 551 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S E+++ L LE ++L+GE FNLSS KQL IL+ KL+ P KT G T Sbjct: 552 AILAEHSKELTQRLAELEVRAHELAGEVFNLSSTKQLQAILYEKLQLPVTKKTPKGAPST 611 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L ++ D P+ K ILE+R L+K+KSTY D LP IN T+RVHT Y A T TGR Sbjct: 612 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPMMINPLTKRVHTSYHQAVTATGR 670 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P +++ADYSQIELRI+AH++ L + F Sbjct: 671 LSSSDPNLQNIPVRNEEGRRIRQAFIAPEGYCIVAADYSQIELRIMAHLSCDAGLLKAFS 730 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + LDIHR AAE+FG+ I+KV+ + RR AK INF +IYG+S F L+ QL I R+EA Y+ Sbjct: 731 DGLDIHRATAAEVFGLPIDKVTAEQRRSAKAINFGLIYGMSAFGLSRQLGIGRNEAQKYM 790 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ Y+E+T+ + GYV T+ GRR++ +I+S + R ERAAINAP+ Sbjct: 791 NLYFERYPGVQHYMEQTRQQAAEQGYVATLDGRRLYLPDIHSRNAISRKAAERAAINAPM 850 Query: 893 QGSAADITRRAMISVHK-SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM S+ L + M++Q+HDELVFEV E + ++ + ++ ++ Sbjct: 851 QGTAADIIKKAMASIDAWLLSQEEPLINMIMQVHDELVFEV-HESVLEGAKAKIKALMES 909 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 C+ L VPL+V++ NW E Sbjct: 910 CM---QLNVPLQVDVGSGKNWDE 929 >gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061] gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus nematophila ATCC 19061] Length = 930 Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust. Identities = 372/983 (37%), Positives = 564/983 (57%), Gaps = 72/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + SH AV Sbjct: 6 DNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIIQYKP----SHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + A G+P + I G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVAAMGLPILVISGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEKEG +V I + DKD+ QLV+P L +T+ + E VI+K+G+P E ++ Sbjct: 121 LALQAEKEGRSVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVIEKYGVPSELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILINASRIKQKKRRENILEY 236 AL GDS DNIPG+PG+G KTA LLQ Y L++I + R K + ++ Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALGLLQGIGGLDAIYARLDDIATLSFR-GAKTLGGKMEQH 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E A LS +L ++TDV + L + + L++ EF + IN V Sbjct: 240 KEVAYLSYQLATIKTDVELDKHCIELSVVPPDADELLALFSHYEFKRWINDVQ------- 292 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 N T +G + T+ S +L+ S Sbjct: 293 ----------NGTWLEG-------NGQKTVSGSAKPALAVPNS----------------- 318 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 + I+ +SY I+ + ++ W++KL+ + SF TD +D + + ++ + Sbjct: 319 --TTVKISPESYQTILERQSLEAWIEKLKHAPAFSFDTETDGLDTLTANLVGMSFAIAAG 376 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + + VE ++ L+ H D+ + L E+L+ LK E+ + KIG N+K+D+ VL Sbjct: 377 ESE----VEAAYLPLA-HDYLDAPQQLDL-HEVLTALKPLLEDANLPKIGQNLKFDRGVL 430 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 RY + + G D ML SYVL+S HD+ S+A++ LSY T ++I K + ++ Sbjct: 431 ARYDVVLEGIVFDTMLESYVLNSVAGRHDMDSLAERHLSYKTTTFEDIAGKGKKQLTFNQ 490 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQID 591 I + ++A E+++V L+L + P+L E L V+++++ P++ V+S+ME TG+ ID Sbjct: 491 IPLEEAAKYAAEDADVTLRLHQAMYPQLASAEVLKKVFQKIEMPLVPVLSRMERTGVLID 550 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L + S EI+ L LE++ Y L+ E+FNL+SPKQL ILF K+K P KT G Sbjct: 551 ARTLAEHSREITVRLDELEKSAYALADEEFNLASPKQLQVILFEKMKLPVLKKTPNGAPS 610 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + LE++ ++ + + ILE R L+K+KSTY D LP +N T RVHT Y A T TG Sbjct: 611 TNEEVLEEL-AENHELPRVILEHRGLAKLKSTYTDKLPQMVNPLTNRVHTSYHQAVTATG 669 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP++ + G++IR+AFI+P ++++ADYSQIELRI+AH+++ L F Sbjct: 670 RLSSRDPNLQNIPVRNEEGRRIRQAFIAPTGYRIMAADYSQIELRIMAHLSQDKGLLAAF 729 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIHR AAE+FGV +E V+ + RR AK INF +IYG+S F L+ QL IPR EA Y Sbjct: 730 AQGKDIHRATAAEVFGVPLEHVTGEQRRSAKAINFGLIYGMSAFGLSRQLGIPRGEAQRY 789 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF R+PG+ Y+E+T+ ++G+VET+ GRR++ EI S + R +ER AINAP Sbjct: 790 MDLYFERYPGVLNYMERTRQQAAEHGFVETLEGRRLYLPEIKSRNAMRRKASEREAINAP 849 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG+AADI + AMI+V + K +M++Q+HDELVFEV E E+ A Q I ME++ Sbjct: 850 MQGTAADIIKLAMIAVDDWIVSEKPNVRMIMQVHDELVFEVHESELAMAEQKIRALMEQS 909 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L L VPLKV++ + +NW + Sbjct: 910 ML----LDVPLKVDVGIGDNWDQ 928 >gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] Length = 930 Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust. Identities = 377/985 (38%), Positives = 556/985 (56%), Gaps = 76/985 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRAF+A P L+ + P A+ G NML L+ + SH AV Sbjct: 6 ENPLVLVDGSSYLYRAFHAFPPLTNSLNE-PTGAMYGVLNMLKSLISQVQ----PSHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ-LPLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFR+E++ YK++RP +P+ L Q LPL + +A GIP + ++G EADD+I Sbjct: 61 VFDAKGKTFRDEMFEQYKSHRPPMPDELRSQILPLHNI-IRALGIPLLVVEGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A K G V I + DKD+ QLV L +T+ +D E VI+K+G+PPE ++ Sbjct: 120 TLAVQASKAGKKVLISTGDKDMAQLVDDNIMLINTMNNTLLDREGVIEKYGLPPELIIDY 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GDS DNIPG+PG+G KTA LLQ GN+ +I N ++ + KK + +LE Sbjct: 180 LALMGDSSDNIPGVPGVGEKTALSLLQGIGNMTDIYANLEKVAELPIRGAKKLGDKLLEA 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E A LS L ++TDV + I E L N +L+ + EF + + Sbjct: 240 KEMADLSYALATIKTDVKLEITPEQLTFGSANNDKLVEYFGRYEFKRWL----------- 288 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERL 355 TEI + +S ++ S+Q KIN+ Q TP E Sbjct: 289 ---------------------TEIMHN---GSSSVTNGSEQPVKINNYQATPPATEPESA 324 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 K+ I+ Y I++ D ++W+ KL + TD +D + + I+ + L+ Sbjct: 325 VKIE---IDRSKYECILSVADFEKWLDKLAQAKLIAVDTETDNLDYMSANLVGISFA-LE 380 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + +I D+ LS LK EN K+G NIKYD + Sbjct: 381 NGEAAYLPLRHNYIGAPQQIDFDTA---------LSRLKPILENPVIEKVGQNIKYDLSI 431 Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 R GI+++G D ML+SYVLDS GR H++ +A+++L + + +EI K + Sbjct: 432 FARNGINVQGVTYDTMLLSYVLDSTGR--HNMDDLAKRYLGHQTISFEEIAGKGKGQLTF 489 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589 D+I +A E++++ ++L +L K+ + L+ +Y ++ P++ V+S+ME G+ Sbjct: 490 DQIPLEHATTYAAEDADITMKLQQVLWEKVSEQPTLVKLYRTMELPLLSVLSRMERNGVL 549 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID + L S +I++ L +LE+ Y+L+G+ FNL+S KQL +ILF KL P KT G Sbjct: 550 IDSNTLLTQSNKIAERLTALEQQAYELAGQTFNLASTKQLQEILFDKLGLPVLKKTPKGA 609 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + LE++ D+ + K ++E R LSK+KSTY D LP INK T RVHT Y A T Sbjct: 610 PSTNEEVLEEL-AYDHELPKLLVEHRGLSKLKSTYTDKLPQMINKHTGRVHTSYHQAVTA 668 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIPI+ + G++IR+AFI +++ADYSQIELRI+AH++K L Sbjct: 669 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIPREGFTMVAADYSQIELRIMAHLSKDQGLIN 728 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIHR AAEIFG+ +E+V+ + RR AK INF +IYG+S F L+ QL IPR++A Sbjct: 729 AFSEGKDIHRSTAAEIFGLPLEQVTSEQRRSAKAINFGLIYGMSSFGLSRQLGIPRNDAQ 788 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 Y+ YF R+PG+ ++ + + GYV T+F RR++ +INS + R ER AIN Sbjct: 789 KYMDLYFQRYPGVQTFMTDIRETAKAQGYVATLFDRRLYLPDINSSNAIRRKAAERVAIN 848 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AADI +RAMI + K + + +M++Q+HDELVFEV E++ SQ+I +ME Sbjct: 849 APMQGTAADIIKRAMIDLDKQIVGNP-DIQMIMQVHDELVFEVRSEKVEEFSQLIKQTME 907 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 KA L VPL V++ V NW E Sbjct: 908 KAA----QLVVPLIVDVGVGQNWDE 928 >gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] Length = 938 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 370/989 (37%), Positives = 560/989 (56%), Gaps = 76/989 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN LVDGSS++YRAF++ P L+ G A+ G NML LL K+ SH V Sbjct: 6 ENPFILVDGSSYLYRAFFSPPHLTNSA-GEATGAVYGVVNMLQSLL----KQFNPSHVVV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++Y +YK+NRP +P+ L Q+ + +A G+P + I G EADD+I T Sbjct: 61 VFDAKGKTFRDDMYTEYKSNRPSMPDDLRIQIEPLHAVIKAMGLPILTIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + A +G I + DKD+ QLV T L +T+ +D+E V +K+GIPPE ++ Sbjct: 121 LSRQASAQGITTLISTGDKDMAQLVDTNTLLINTMTNTVLDVEGVNEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----------ASRIKQKKRRENI 233 L GD +DNIPG+PG+G KTA +LQ G++++I +N S+ KK ++N Sbjct: 181 GLMGDKVDNIPGVPGVGEKTALAMLQGLGSMDDIYLNLDKLAALGFRGSKTIAKKMQDN- 239 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E ARLS +L ++TDV ++ E + + LI LEF + ++ Sbjct: 240 ---EEMARLSYQLATIKTDVELSESYEDFKPKAQDTDALIKLFGQLEFRRWLS------- 289 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 +LD + N A+ + T+ T+ S+ + Sbjct: 290 --------ALLDNGSMTNHQGAVSSTATSSTSTATANPSATTSS---------------- 325 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 I+ Y I + QW+ KLE SF T ++D ++ + ++ + Sbjct: 326 ---------IDRSGYKTIYTQGQLTQWIAKLEAAELFSFDTETTSLDYMQARIVGLSFAV 376 Query: 414 LDQ-KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 D +E ++ L+ H D+ + LT L L+ E+E + K+G N+KYD Sbjct: 377 QSNVGSDEQPIIEAAYLPLA-HDYIDAPKQLDLTT-TLEKLRPLLESEKYKKVGQNLKYD 434 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY---TRKEILKSRKSS 527 + VL +GI ++G + D ML SYVLDS GR HD+ ++A K+L + + +EI K Sbjct: 435 RSVLLNHGIELKGIKFDTMLESYVLDSTGR--HDMDTLALKYLGHQCISFEEIAGKGKKQ 492 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586 +P ++IS + +A E+++V L+L L L +L E KLL V+ ++ P++ V+S +E Sbjct: 493 LPFNQISIIEAAPYAAEDADVTLRLHLQLFEQLSAEPKLLSVFNNIELPLLTVLSDIERG 552 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G++ID DLL + SAEI K LL LE Y+ +G+ FNLSSPKQL IL+ +L+ P KT Sbjct: 553 GVEIDSDLLTKQSAEIGKRLLELEALAYEEAGKPFNLSSPKQLQTILYDELELPVLKKTP 612 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 G T + L+++ P+ K I+E R LSK+KSTY D LP +N++T R+HT Y A Sbjct: 613 KGAPSTAEEVLQELAL-TYPLPKLIIEHRGLSKLKSTYTDKLPKMVNEKTGRLHTSYQQA 671 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 T+TGRL+S +PNLQNIPI++ G++IR+AFI+ P K+++ADYSQIELRI+AH+++ Sbjct: 672 VTVTGRLSSTDPNLQNIPIRSAEGRRIRQAFIAQPGYKIVAADYSQIELRIMAHLSQDKG 731 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L F DIH+ A+E+F V +++V+ + RR AK INF +IYG+S F LA QL I R Sbjct: 732 LLDAFSTGKDIHKATASEVFSVPLDEVTTEQRRSAKAINFGLIYGMSAFGLAKQLNIGRH 791 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA Y+ +YF+R+PG+ Y+E T++ + YVETI GRR+ I S ++ ERA Sbjct: 792 EAQLYMDKYFNRYPGVLIYMEDTRSLANEKAYVETILGRRLQLPNIKSRNGMLKKAAERA 851 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIV 945 AINAP+QG+AADI ++AMI + + + +ML+Q+HDELVF + EE + + ++ I Sbjct: 852 AINAPMQGTAADIIKKAMIDMADWIAQKSPGSVQMLMQVHDELVFSIKEELVESYTKEIQ 911 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M KA +L VPL + V +NW E Sbjct: 912 AIMAKAA----DLDVPLIADAGVGDNWDE 936 >gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] Length = 931 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 368/983 (37%), Positives = 542/983 (55%), Gaps = 71/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P D +P NA+ G NML +++ E IA V Sbjct: 6 DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASERIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E+YP+YKANRP +P+ L Q+ + +A G+P I + G EADD+I T Sbjct: 61 VFDAKGKTFRDEMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LAYQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G+LE + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGSLEKLYDNLDDIASLGFRGSKTMAKKLVDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++ DV + + L+ + N LI L F +N + Sbjct: 241 EEAFLSYELATIKLDVELEETPDSLLKAEPNTDELIKLYGQLVFKSWLNEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 L+ T G+ + E + + ++ TS + Sbjct: 292 ------LEGGT----GVVVADEKSGAASGAGASATASEIDTSAVT--------------- 326 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I++ + W+ KL+ +F TD++D + + ++ +T ++ Sbjct: 327 -----IDRSQYETILDQQAFNTWLDKLKAADVFAFDTETDSLDYMVANLVGVSFAT-EEG 380 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L LK E++ K+G N+KYD VL Sbjct: 381 VAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDASVLA 431 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ ++I K + ++I Sbjct: 432 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 491 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q +A E+++V L+L L + EKL +YE ++ P++ V+S++E TG+ ID Sbjct: 492 ELEQASPYAAEDADVTLRLHNRLLANIEQDEKLKTIYEEVEVPLVPVLSRIERTGVLIDD 551 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L S EI+ L LE+ ++++ ++FN++SPKQL ILF K+ P KT +G T Sbjct: 552 MKLAAQSQEIALRLDELEQQAFEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPST 611 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 612 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGR 670 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ D G++IR+AFI+P K+++ DYSQIELRI+AH++ L F+ Sbjct: 671 LSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQ 730 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH AAEI GV+IE+VS + RR AK +NF +IYG+S F LA QL IPR EA Y+ Sbjct: 731 QGKDIHAATAAEIIGVDIEQVSAEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQQYM 790 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ +Y+E T++ + GYVETIFGRR+H EI S R ERAAINAP+ Sbjct: 791 DTYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 850 Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + +E K+L+Q+HDELVFEV E + + ME A Sbjct: 851 QGTAADIIKKAMLLVDEWIESQGQGRVKLLMQVHDELVFEVQESALAEIESKVQELMESA 910 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL +NW + Sbjct: 911 A----QLDVPLIAEAGHGDNWDQ 929 >gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] Length = 934 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 366/984 (37%), Positives = 556/984 (56%), Gaps = 70/984 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N LVDGSS+++RA++A P + +G P A+ G NML LL K+ + AV Sbjct: 6 DNPFILVDGSSYLFRAYHAAPNFTNG-NGEPTGAVYGVINMLRSLL----KQFETNRIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 IFD TFRN++YP+YKANRP +P+ L Q+ PL +L +A G+P I I G EADD+I Sbjct: 61 IFDAKGKTFRNDMYPEYKANRPPMPDELRCQIEPLHKL-IKAMGLPLISISGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A K G V I + DKD+ QLV L +T+ + E V++K+G+PPE ++ Sbjct: 120 TLASQASKAGIPVLISTGDKDMAQLVDENVTLINTMTNVIMGPEGVVEKFGVPPELIIDY 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEY 236 AL GD+ DNIPG+PGIG KTA LLQ G L+ + N I K + + E Sbjct: 180 LALMGDASDNIPGVPGIGDKTARALLQGVGGLDTLYANLDDIAPLGFRGSKGMAKKLEEN 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E A LS KL ++ DV + E L+ ++ N LI + F + + + Sbjct: 240 KEGAYLSYKLATIKLDVELEQQPEELVKQEPNVDELIQMFGQMNFKRWLTEM-------- 291 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 ++ ++ K ++ ET R T+ + + S ++T I + Q Sbjct: 292 ---------LDGSDGKIVSHETSAHRTTSSSSDEGDSAEEET--IVAAQ----------- 329 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 ++ Y I + W++K+ +F TD++D + I ++ S +++ Sbjct: 330 ------VDRSKYETIFTKEAFSAWLEKVNNAEVTAFDTETDSLDYMVANLIGLSFS-VEE 382 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + V ++D +D +L+ LK + E+E K+G N+KYD VL Sbjct: 383 GEAAYVPVAHDYLDAPEQLDRDW---------VLAQLKPYLEDETKAKVGQNLKYDASVL 433 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 RY I M+G + D ML SYV +S H++ S+A ++L + +EI K + ++ Sbjct: 434 ARYDIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQ 493 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591 I+ + +A E++++ L+L +L KL+ EKL V+ ++ P+I V+S+ME G+ ID Sbjct: 494 IALEEAAPYAAEDADITLRLHNVLHAKLVTDEKLNAVFTDIELPLISVLSRMERKGVYID 553 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 LL S EI + L LE ++++G++FN++SPKQL ILF K++ P KT +G Sbjct: 554 DMLLSAQSLEIGQRLDELETASFEVAGQEFNMNSPKQLQTILFEKMELPVIKKTPSGAAS 613 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L+++ + + K ILE+R L+K+KSTY D LP IN T RVHT Y A T TG Sbjct: 614 TNEEVLQELAL-EYELPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATG 672 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+ G++IR+AF++P K+++ DYSQIELRI+AH+++ L + F Sbjct: 673 RLSSTDPNLQNIPIRNKEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDRALLEAF 732 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIH AAE+ GV+IE+V+ + RR AK INF +IYG+S F LA Q+ I R EA DY Sbjct: 733 SAGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINFGLIYGMSAFGLAKQIGISRGEAQDY 792 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF R+PG+ +Y+E+T+ + GYVET++GRR++ EIN+ + R ERAAINAP Sbjct: 793 MNVYFERYPGVMQYMEETRLLATEQGYVETLYGRRLYLPEINARNAIRRKAAERAAINAP 852 Query: 892 IQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 +QG+AADI ++AMI V +E +L+Q+HDELVFEV E+E+ ++ + ME Sbjct: 853 MQGTAADIIKKAMILVDNWIEAEGTGRVNLLMQVHDELVFEVKEDELEAITKQVTALMEA 912 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A ++L VPL +NW E Sbjct: 913 A----VSLDVPLIAESGFGDNWDE 932 >gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661] gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661] Length = 928 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 357/985 (36%), Positives = 555/985 (56%), Gaps = 78/985 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GKPTGAMYGVLNMLRSLLLQYKP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEAYKSHRPPMPDDLRAQIEPLHNMVRAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A K+G V I + DKD+ QLV+P L +T+ + + V++K+GIPPE ++ Sbjct: 121 LALEAGKKGKPVLISTGDKDMAQLVTPDITLINTMNNAILGPDEVVEKYGIPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GD+ DNIPG+PG+G KTA LLQ G +++I N ++ K + + Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGGIKDIYANLDKVADLTFRGAKTMATKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L + + L+ + EF + I Sbjct: 241 EMALLSYQLATIKTDVELDLTSEQLTVNEPAVEELLGLFREYEFKRWI------------ 288 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 T+++ ++ + S QK +E++++ Sbjct: 289 --------------------TDLEEGKWLQGKK------------SHPAAQKALVEQVEE 316 Query: 358 L--SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + ++ + Y I++ + + W+++L+T +F + TD++D + + I+ + ++ Sbjct: 317 QVETTSTLSAEGYVTILDEETFESWLKQLKTSSLFAFDLETDSLDTLSANIVGISFA-IE 375 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 V ++D ++S +L LK E+ LK+G N+KYD+ V Sbjct: 376 PGKAAYLPVAHDYLDAPAQLDRNS---------VLERLKPLLEDPALLKVGQNLKYDRGV 426 Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531 L Y I ++G + D ML SY L S S HD+ +++ +WL++ + +EI K + + Sbjct: 427 LKNYDIELQGIKFDTMLESYALSSVGSRHDMDTLSSRWLNHKTVSFEEIAGKGKKQLTFN 486 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQI 590 +I Q +A E+++V LQL L + P+L E+ V+E ++ P++ V+S++E G+ I Sbjct: 487 QIDLEQAAHYAAEDADVTLQLHLKMWPELEKEQGPKEVFENIEMPLLTVISRIERNGVLI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 DQ +L S E++ L LE+ ++L+GE FNLSSPKQL ILF K KT G Sbjct: 547 DQGILAAHSKELTIRLAELEQKAHELAGEPFNLSSPKQLQTILFEKQGIKPTKKTPGGAP 606 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T+ + L ++ D P+ K ILE R L+K+KSTY D LP IN T RVHT Y A T T Sbjct: 607 STSEEVLAELAL-DYPLPKVILENRGLAKLKSTYTDKLPLMINPITGRVHTSYHQAVTAT 665 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP++ + G++IR+AFI+ K+++ADYSQIELRI+AH+++ L Sbjct: 666 GRLSSTDPNLQNIPVRNEEGRRIRQAFIASKGHKIVAADYSQIELRIMAHLSQDKGLLSA 725 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F +DIHR AAE+FG+ ++KV+ + RR AK INF +IYG+S F L+ QL I EA Sbjct: 726 FAEGMDIHRATAAEVFGMALDKVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKK 785 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ YF R+PG+ EY+E T+ + GYV T+ GRR++ +IN+ + R ERAAINA Sbjct: 786 YMDLYFERYPGVLEYMESTRQQAAEKGYVSTLDGRRLYLPDINASNAMRRKAAERAAINA 845 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 P+QG+AADI ++AMI+V L KM++Q+HDELVFEV E+ A+ I ME Sbjct: 846 PMQGTAADIIKKAMIAVDGWLTPQSAPDVKMIMQVHDELVFEVKTSEVEAATAKIRDLME 905 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 + + L VPL+V++ V +NW++ Sbjct: 906 NS----MKLDVPLQVDVGVGDNWEQ 926 >gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] Length = 933 Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust. Identities = 370/983 (37%), Positives = 547/983 (55%), Gaps = 69/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ + G P A+ G NML L+ + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNRA-GEPTGAMYGVLNMLRSLMLQYQP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + QA G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIEPLHKMVQAVGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V K+G+PPE ++ Sbjct: 121 LAQAAEKAGRHVLISTGDKDMAQLVTPNITLINTMNNTILGPQEVCDKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-----KQKKRRENILEY-A 237 AL GDS DNIPG+PG+G KTA LLQ G+L+ I + ++ + K LE Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGIGSLKQIYSDLDKVATLSFRGAKTMGAKLELNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS L ++TDV + + + L L+ + +L EF + + T Sbjct: 241 DQADLSYLLATIKTDVELDVTCDDLKLKPMDTAQLHELFSRYEFKRWLEDAETGSWL--- 297 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + E K A DT + ++T+ I Sbjct: 298 ----------SGEKKAPAARKSAKDDTETAVTAV----EETTAI---------------- 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ ++Y +++ + + L+ +F TD++D + + ++ +T Sbjct: 328 -----LSQENYLTVLDDAALDSLIASLKAAKIFAFDTETDSLDVLTTNLVGLSFATAPSV 382 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D ++L+ LK E+ + LK+G N+KYD+ V+ Sbjct: 383 A-AYIPVGHDYLDAPDQLDRD---------DVLAKLKPVLEDANLLKVGQNLKYDQGVMA 432 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RYGI ++G D ML SY LDS HD+ S+A++ L++ T +EI KS + ++I Sbjct: 433 RYGIELQGIAFDTMLESYDLDSVAGRHDMDSLAERHLNHKTITFEEIAGKGKSQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V LQL L L P+L E L V+ +D P++ V+S+ME TG+ ID Sbjct: 493 ALEQATPYAAEDADVTLQLHLKLWPQLEKEAGLKKVFTDIDMPLVPVLSRMERTGVLIDS 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 ++L + S E++ L LE+ ++ +GE FNLSSPKQL ILF K K P KT G T Sbjct: 553 NILGKHSQELAIRLDELEKKAHEAAGEPFNLSSPKQLQAILFEKQKLPVVKKTPGGAPST 612 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L +++ + ILE R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 613 NEEVLAELSEQGFELPTIILEHRGLAKLKSTYTDKLPQMINPATGRVHTSYHQAVTATGR 672 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AFI+P K+++ADYSQIELRI+AH++ L F Sbjct: 673 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYKIVAADYSQIELRIMAHLSGDKGLLTAFA 732 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL I R EA Y+ Sbjct: 733 AGKDIHRATAAEVFGLKLEDVTSEQRRSAKAINFGLIYGMSAFGLARQLNIARGEAQRYM 792 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ + GYVET+ GRR++ EI+S R ERAAINAP+ Sbjct: 793 DLYFERYPGVLEYMERTRQQAAEQGYVETLDGRRLYLPEIHSRNGMRRKGAERAAINAPM 852 Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAMISV L K +M++Q+HDELVFEV E I + + ME++ Sbjct: 853 QGTAADIIKRAMISVDAWLLQQKEPLVRMIMQVHDELVFEVHESVIEQTVEKVRELMEQS 912 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPLKV++ NW + Sbjct: 913 ----LELAVPLKVDVGTGENWDQ 931 >gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] Length = 927 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 362/988 (36%), Positives = 540/988 (54%), Gaps = 86/988 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P L+ G P A+ G NML L+ + A + D Sbjct: 4 LILIDGSSYLYRAFHALPPLTNAA-GEPTGALFGVVNMLRATLKEK-----PDYVAFVVD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++YP YKANRP +P+ L Q+ + A GI + + G EADD+I T Sbjct: 58 APGKTFRDDLYPQYKANRPPMPDELRAQVQPMCDIVHALGIDILRVDGVEADDVIGTLAT 117 Query: 127 IAEKEGFAVTIISTDKDLMQLV-------SPTTCLYDTVKEEKIDIEH-VIKKWGIPPEK 178 A G VTI + DKD QLV + L +T+ ++D + VI+K+G+P + Sbjct: 118 QAADAGMEVTISTGDKDFAQLVRAPDGNGGGSIALVNTMTGSRMDSDAAVIEKFGVPAGR 177 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 +V L AL GD+IDN+PG+ G KTAA + E+G+LE ++ A IK K +N+ + Sbjct: 178 IVDLLALMGDTIDNVPGVEKCGPKTAAKWIGEHGSLEGVIAAAPGIKGKIG-DNLRAALD 236 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAA 297 L+R+LV +RTDVP+ E L+L + + +L F + + + T + A Sbjct: 237 RLPLNRELVTIRTDVPLEQGPEALVLRERHVDQLRGLYARYGFNQALRELEGGTVGAEVA 296 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 EP + + F++ + E L Sbjct: 297 EKEP----------------------GRARGTGFATATAAAP-------------EGLDP 321 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 P Y + + +Q W+ L GS + TD++D ++ + + Sbjct: 322 ALAAP---GQYETVTTVEQLQAWIATLRAAGSFALDTETDSLDPMRARLVGL-------- 370 Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLT--KEILSYLKKFFENEHFLKIGHNIKYD 472 SF E ++ L D G ++ L L+ + KIG + KYD Sbjct: 371 ---SFAAEPGRAAYLPLG----HDYPGAPAQLGYEQALDLLRPLLADPAVRKIGQHGKYD 423 Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 VL R+G+++ G+ +D +L S+VLDSG + HD+ S+A + L YT ++I I Sbjct: 424 LHVLRRHGVAVAGYADDTLLESFVLDSGNARHDMDSLALRHLGYTTVKYEDICGKGVRQI 483 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587 P + + +A E++++ L+L +L +L E +L VY ++ P++ V+ ++E G Sbjct: 484 PFSQCALDDATRYAAEDADITLRLHRVLSARLQAEPQLQAVYRDIEMPLVQVLERIEANG 543 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + +D D L++ A++S+ +L +E L+G FNL SPKQL +LF +LK P+ KT Sbjct: 544 VLVDMDELRRQGADLSRRMLEAQERATALAGRSFNLDSPKQLCALLFDELKLPALVKTPK 603 Query: 648 GQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 GQ T + LE I + + P I ILE+R L+K++STY D LP +N T RVHT Y A Sbjct: 604 GQPSTNEEALEAIADLHELPRI--ILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQA 661 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 TGRL+S +PNLQNIPI+TD G++IRRAF++PP +KL++ DYSQIELRI+AH+++ Sbjct: 662 GAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPPGRKLVACDYSQIELRIMAHLSQDPG 721 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L F + DIHR AAE+FG +E+V+ RR AK INF ++YG+ F LA QL I R Sbjct: 722 LLGAFASGADIHRATAAEVFGRPLEEVTVNERRAAKAINFGLMYGMGAFGLARQLGIDRG 781 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 +A DYI YF R+PG+ +Y+E+T+ R+ GYVET+FGRR+H + IN+ ++ R ERA Sbjct: 782 QAQDYIALYFSRYPGVRDYMERTREQARERGYVETVFGRRLHLEYINARNAAQRAGAERA 841 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAP+QG+AADI +RAMI+V + DH +MLLQ+HDELVFE EE + + Sbjct: 842 AINAPMQGTAADIIKRAMIAVDAWIADHAQRARMLLQVHDELVFEADEEFVPELVSRVPE 901 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A +L VPL V+ + NNW E Sbjct: 902 LMSAAG----DLSVPLVVDTGIGNNWDE 925 >gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113] gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113] Length = 901 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 367/974 (37%), Positives = 549/974 (56%), Gaps = 87/974 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS+++RAF+A P L+ G P AI G NML KLL + + IA V+FD Sbjct: 7 LILIDGSSYLFRAFHALPSLTTS-KGQPTGAIYGVINMLRKLLDEYQPQYIA----VVFD 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ YKA+RP +PE L Q+ + +A G+P + ++G EADD+I T Sbjct: 62 AKGKTFRHELFEQYKAHRPPMPEELACQIQPLHDLIRALGLPLLCMKGVEADDVIGTLAR 121 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + I S DKDL QLV+P L +T+ K+D V K+ + PE++V AL Sbjct: 122 QATAQRLETLISSGDKDLAQLVNPHVNLVNTMNLSKLDPAGVKAKFNVSPEQIVDYLALV 181 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DNIPGIPG+G KTAA LL +Y +L+ I+ AS IK K EN+ + L+++L Sbjct: 182 GDTVDNIPGIPGVGPKTAAKLLCQYHSLDQIMAYASDIK-GKMGENLRSHLPQLPLAKQL 240 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 +R DV + + L N L ALEF + + + A+ P Sbjct: 241 ATIRQDVSLDWSPKELQRAPPNISALRELYAALEFKSWLRELLDNENSHASTPHP----- 295 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + N A ET + SE++ Sbjct: 296 --STNPAPAYET----------------------VFSEES-------------------- 311 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 ++ W+ +L+T +F + T+++D ++ + ++ + E Sbjct: 312 ----------LEHWIARLKTTELFAFDLETNSLDYMEAEIVGLSFAIQPH--------EA 353 Query: 427 IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 ++I L +D+T L +E +L+ LK E+ K+G N+K+D+ VL YGI ++G Sbjct: 354 MYIPLG---HEDATAPPQLPREQVLARLKPLLEDPRHGKVGQNLKFDRNVLANYGIELQG 410 Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT--RKEILKSRKS-SIPIDKISDSQVQEH 541 D ML SYVLDS + H++ S+A K+L T E++ + S +P ++++ + + Sbjct: 411 IHHDSMLESYVLDSTATRHNMDSLALKYLQRTTITYEMVAGKGSKQLPFNQVTIEKAAPY 470 Query: 542 AIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 A E++++ LQL P++ E+ L +Y+ L+ P+I V+S+ME G+Q+D LK S Sbjct: 471 AAEDADISLQLHRYFWPRIQQEESLRRLYQELEIPLIPVLSRMERNGVQVDTTQLKTQSD 530 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 E++ L LE+ +DL+GE FNL+SPKQ+ IL+ KLK P KT TGQ T L+++ Sbjct: 531 ELAARLKKLEQEAFDLAGESFNLASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQEL 590 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 D P+ + +L++R LSK+KSTY D LP +N T RVHT Y A T TGRL+S +PNL Sbjct: 591 AL-DYPLPQRLLQYRTLSKLKSTYTDRLPLQVNPHTGRVHTSYHQAVTATGRLSSSDPNL 649 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIPI+T G++IR+ FI+PP +L++ADYSQIELRI+AH+++ L FE DIH+ Sbjct: 650 QNIPIRTAEGRRIRQTFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEEDIHQR 709 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A E+F +E+V+P+ RR AK INF +IYG+S L QL I R+ A YI+RYF R+P Sbjct: 710 TATEVFRTPLEEVTPEQRRSAKAINFGLIYGMSAHGLGRQLGINRTAAQHYIERYFQRYP 769 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 G+ Y++ RQ GYVET+FGRR++ +I+S ++ RN ER AINAP+QGSAADI Sbjct: 770 GVKAYMDNICQQARQKGYVETLFGRRLYLPDIHSRQTQRRNQAERTAINAPMQGSAADII 829 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 +RAMI L+ + +M++Q+HDELVFEV E+++ + I +M A L++ Sbjct: 830 KRAMIHTDGWLQKNSDNARMIMQVHDELVFEVAEDKLEITMRAIRENMTAAA----QLKI 885 Query: 961 PLKVNIKVSNNWQE 974 PL V I NW E Sbjct: 886 PLIVEIGSGANWDE 899 >gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168] gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168] Length = 928 Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust. Identities = 366/982 (37%), Positives = 548/982 (55%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-----KQKKRRENILEY-A 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + + +I + K LE Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTMAGKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS KL ++TDV + + E L ++ L+ + EF + V A Sbjct: 241 EVAYLSYKLATIKTDVELELTCEQLEVKQPIADELLDLFRKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P T + I+ D T Sbjct: 301 GAKPAAKPQET-----LVIDESPDEATAA------------------------------- 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ ++Y I++ ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----LSYENYVTILDEATLKAWIAKLEKAPVFAFDTETDSLDNITANLVGLSFA-VEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D ++D L LK E+E K+G N+KYD+ +L Sbjct: 379 VAAYVPVAHDYLDAPDQIARDRA---------LELLKPLLEDEKVSKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++ +WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G+ ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVMIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEEITLRLAELEQKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIPPKDHVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V LE + +M++Q+HDELVFEV ++++ S+ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDGWLESEQPRVRMIMQVHDELVFEVHKDDLDVVSKKI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VPL V + NW + Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926 >gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] Length = 923 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 362/983 (36%), Positives = 543/983 (55%), Gaps = 79/983 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRA++A P + +G P A+ G NML +L+ E H AV Sbjct: 6 ENPLILIDGSSYLYRAYHAAPNFTNS-EGQPTGAVYGVINMLRSMLRQFSTE----HIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E++ DYKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 IFDAKGKTFRDEMFADYKANRPPMPDDLRGQIEPLHAVIKAMGLPLISISGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A K G V I + DKD+ QLV L +T+ + +D V++K+GI PE ++ Sbjct: 121 LATQASKAGMPVLISTGDKDMAQLVDENITLINTMTDVVMDPAGVVEKFGIGPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LL G L+ + I K + +L+ Sbjct: 181 ALMGDKVDNIPGVPGVGEKTAKALLTGIGGLDALYDRLDEIPALGFRGSKTMPKKLLDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++ DV + I + L+ + + L L+F + + + + D Sbjct: 241 EGAYLSYQLATIKLDVELDITPQELVKAEPDVDELTRLFGQLQFRRWLEEMLSGSDGK-- 298 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 I E A+ +E K Sbjct: 299 --------IVADEKAAQAVASE-------------------------------------K 313 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + I+ Y I++ W+++L++ + +F TD++D + + ++ + +++ Sbjct: 314 VIAPVIDRSGYEVILDQSRFDAWLEQLKSAEAFAFDTETDSLDYMVANLVGVSFA-VEEG 372 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L+ LK E+ + KIG N+KYD V+ Sbjct: 373 KAAYVPVAHDYLDAPEQLDRDW---------VLAQLKPLLEDPNQAKIGQNLKYDASVIA 423 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RYGI M+G + D ML SYV +S HD+ S+A ++L + + +EI K + ++I Sbjct: 424 RYGIEMQGIKYDTMLESYVYNSVVGRHDMDSLALRYLEHKNISFEEIAGKGKGQLTFNQI 483 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q +A E++++ L+L L PK+ EKLLHV+ ++ P++ V+S+ME TG+ ID Sbjct: 484 DLEQAGPYAAEDADITLRLHNALYPKVSADEKLLHVFSDIEMPLVPVLSRMERTGVLIDS 543 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L S EI++ L LE+ ++++ ++FNLSSPKQL ILF K+ P KT +G T Sbjct: 544 MKLSAQSQEIAQRLDELEKRAFEIADQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPST 603 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP +N T RVHT Y A T TGR Sbjct: 604 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGR 662 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AFI+P K+++ DYSQIELRI+AH++ L F Sbjct: 663 LSSSDPNLQNIPVRNDEGRRIRQAFIAPQGYKVLAIDYSQIELRIMAHLSGDKALLDAFC 722 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH AAEI G+ +++VS + RR AK INF +IYG+S F LA QL + R EA +Y+ Sbjct: 723 HGKDIHAATAAEILGLPLDQVSSEQRRRAKAINFGLIYGMSAFGLAKQLDMGRGEAQEYM 782 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E T+ + GYVET+FGRR++ +I S R ERAAINAP+ Sbjct: 783 NTYFERYPGVLEYMETTRTVASEQGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPM 842 Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAM+ V + + + ++L+Q+HDELVFEV E EI + +Q I ME A Sbjct: 843 QGTAADIIKRAMVLVDEWIGQQESGRVRLLMQVHDELVFEVQESEIESVAQEIKTLMESA 902 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL +I NW + Sbjct: 903 A----QLDVPLIADIGYGENWDQ 921 >gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a] gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a] Length = 924 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 347/977 (35%), Positives = 553/977 (56%), Gaps = 63/977 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P LS G P A+ G NML L+ ++ A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLSNAQ-GEPTGALFGVVNMLRSTLKER-----PAYVAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123 D P TFR+++Y YKANRP +P+ L Q+ P+ R+ +A GI + + G EADD+I T Sbjct: 56 VDAPGKTFRDDLYDQYKANRPPMPDELRSQVEPMCRI-VEALGISILRVPGVEADDVIGT 114 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCL 182 + VTI + DKD QLV P L +T+ ++D + V++K+G+ ++++ L Sbjct: 115 LALQGLAQDLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIIDL 174 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD++DN+PG+ G KTAA L EY +L+ ++ A +K K EN+ E L Sbjct: 175 LALMGDTVDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKGKIG-ENLRAALERLPL 233 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 +R+LV +RTD+ + L L + + P L FT+ + + PV Sbjct: 234 NRELVTIRTDLALDASPTTLALREQDVPELTELYARYGFTQALKELGAPVPA------PV 287 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 T +G A + F+ S + P L+ LS Sbjct: 288 AASEATPSLRGTA-------------AGFAR--------GSVEAPAAGTLD--PALSA-- 322 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 Y +++ + +Q WV++L+ SF TD +DA ++ + I+++ + Sbjct: 323 --PGEYETVLSAEQLQAWVERLQQADLISFDTETDALDAMRARLVGISLAVEPGR----- 375 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 +I + H + + + +++L L+ ++ K+G + KYD VL R+G+ Sbjct: 376 ---AAYIPVG-HDYPGAPAQLPM-QQVLDALRSVLQDPAKKKLGQHGKYDLHVLRRHGVQ 430 Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538 ++G+ +D ML S+VL+S + HD+ S+A ++L Y+ +++ IP ++ + Sbjct: 431 VQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYSTIKFEDVAGKGAKQIPFSQVGIDEA 490 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ L+L L+P+L+ E L VY ++ P++ V++ +E G+++D D L++ Sbjct: 491 SRYAAEDADITLRLHHALQPQLLAEPALDSVYRGIEMPLVPVLASIEANGVRVDTDELRR 550 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S ++S +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T + L Sbjct: 551 QSQDLSSRMLAAQQKATELAGRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEAL 610 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E I + + + ILE+R L+K++STY D LP +N T RVHT Y + TGRL+S + Sbjct: 611 EAI-ADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGAATGRLSSSD 669 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+T+ G++IRRAF++P +L++ADYSQIELRI+AH+++ L + FE D+ Sbjct: 670 PNLQNIPIRTEDGRRIRRAFVAPEGFQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADV 729 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG +E+V+P RR AK INF ++YG+S F LA L I R +A DY+ YF Sbjct: 730 HRATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQDYVALYFS 789 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ +++E+ + R GYVET+FGRR++ ++I++ +R ERAAINAP+QG+AA Sbjct: 790 RYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAA 849 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI +RAM+ V + L D +M+LQ+HDELVFE + +V M +A Sbjct: 850 DIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEDLRLQVVERMSQAA----K 905 Query: 958 LRVPLKVNIKVSNNWQE 974 LRVPL V+ V NNW E Sbjct: 906 LRVPLVVDTGVGNNWDE 922 >gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT] gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT] Length = 951 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 377/995 (37%), Positives = 555/995 (55%), Gaps = 75/995 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRAFYA P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLVLVDGSSYLYRAFYAFPPLTNSL-GEPTGAMYGVLNMLKSLIAQVQ----PTHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+EI+ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 61 VFDAKGKTFRDEIFEQYKSHRPPMPDDLRQQIQPLHNIIKALGIPLLSVEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A ++G V I + DKD+ QLV L +T+ +D + VI K+GIPPE +V Sbjct: 121 LAVQASQQGKNVLISTGDKDMAQLVDDNIMLINTMNNSLLDRDGVIDKYGIPPELIVDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+ G+G KTA LLQ G++ I N ++ KK E + Sbjct: 181 ALMGDSSDNIPGVSGVGEKTALGLLQGIGSMAEIYANLEKVAGLSIRGAKKLGEKLSSAK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A LS L ++T+V + I + L+L N +LI + EF + +N V + Sbjct: 241 ADADLSYLLATIKTNVELDITPDQLVLGQNNQDQLIEYFARYEFKRWLNEVISG------ 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++ K E ++D+ T S+ S +T KI+ Sbjct: 295 ---------ESSLTKATQQEIKLDKTQTNSASESKSAVKKTIKID--------------- 330 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413 SY I + + W++KL+ + TD +D + + I+ + Sbjct: 331 -------RTSYETIDTQEKLNSWLEKLQQADLIAVDTETDALDPMRANLVGISFALTNSE 383 Query: 414 -----LDQKDDTSFKVET-IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIG 466 L K +T +F + + Q KN L KE L+ LK EN K+G Sbjct: 384 ACYIPLAHKQAVKEMTQTDLFTESEQNAEQFELVKNQLNKETCLAQLKPLLENPSIQKVG 443 Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTRKE---IL 521 NIKYD + + I + G D ML SYVLDS GR H++ ++++++L + E I Sbjct: 444 QNIKYDLTIFANHHIQLNGVCFDTMLQSYVLDSTGR--HNMGALSERYLGHQVIEFESIA 501 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVV 580 K + DKI+ +Q E+A E++++ ++L +L +L L+ V+ ++ P++ V+ Sbjct: 502 GKGKKQVTFDKIAIAQATEYAAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVL 561 Query: 581 SQMEITGIQID-QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 S+ME G+ ID Q LLKQ S +I++ L +LE+ +Y +G +FNL+S KQL +ILFTKL Sbjct: 562 SKMERNGVLIDSQALLKQ-SEKIARRLTALEQQVYQEAGAEFNLASTKQLQEILFTKLAL 620 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 P AKT G T LE + + + K ++E R L+K+KSTY D LP+ +NK+T RV Sbjct: 621 PIIAKTPKGAPSTNEDVLETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRV 680 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 HT Y A T TGRL+S +PNLQNIPIK + G IR+AFI+ K+I+ADYSQIELRI+A Sbjct: 681 HTSYHQAVTATGRLSSSDPNLQNIPIKNEEGHCIRQAFIARKGYKIIAADYSQIELRIMA 740 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+++ L F DIHR AAEIFG+ + +V+ + RR AK INF +IYG+S F L+ Sbjct: 741 HLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIYGMSSFGLSN 800 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL I R+ A Y+ YF R+PG+ ++ + ++ GYVET+FGRR++ EINS + Sbjct: 801 QLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQGYVETLFGRRLYLPEINSSNAIR 860 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AINAP+QG+AADI + AMI++H ++ + + +M++Q+HDELVFEV E ++ Sbjct: 861 RKGAERVAINAPMQGTAADIIKLAMIAIHNEIKKNDI--QMIMQVHDELVFEVKENKVDE 918 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 S +I ME A +L VPL V+I V +NW E Sbjct: 919 YSALIKSLMENAA----HLSVPLIVDIGVGDNWDE 949 >gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont] Length = 929 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 365/986 (37%), Positives = 547/986 (55%), Gaps = 79/986 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLLMQYQP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFENYKSHRPPMPDDLRAQIAPLHEMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK+G AV I + DKD+ QLV+P L +T+ + E V +K+G+PP ++ Sbjct: 121 LALEAEKQGRAVLISTGDKDMAQLVTPGITLINTMTNTVLGPEEVEQKYGVPPSLIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 A+ GDS DNIPG+PG+G KT LLQ G +++I N ++ K + + Sbjct: 181 AMMGDSSDNIPGVPGVGEKTTQALLQGLGGMQSIYDNLDKVADLSFRGAKTMAAKLEQNR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++TDV + + E L + + + L + EF + + Sbjct: 241 DVAFLSYQLATIKTDVELELACEQLTVNEPDVEALQTLFSRYEFKRWL------------ 288 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + E K + Q K NS+ QK L+ Sbjct: 289 --------ADLQEGKWL----------------------QGKKSNSQ--AQKSLLDEPAV 316 Query: 358 LSQYPIN---NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 + ++ +D Y I++ W++KL++ +F + TD++D + + IA + Sbjct: 317 AAAETVSVLSSDGYVTILDEATFADWLKKLQSADVFAFDLETDSLDTLSANIVGIAFAVA 376 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 K V ++D + + +L LK E+ K+G N+KYD+ Sbjct: 377 PGKA-AYLPVAHDYLDAPPQLDRAA---------VLKQLKPLLEDSKAAKVGQNLKYDRG 426 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 VL Y I + G + D ML SY L+S HD+ S+A +WL++ T +EI K + Sbjct: 427 VLKNYDIELNGIKFDTMLESYCLNSVGGKHDMDSLAARWLNHKTVTFEEIAGKGKYQLTF 486 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQ 589 ++I+ Q +A E+++V LQL L + PKL E V+E ++ P++ V+S++E G+ Sbjct: 487 NQIALEQAAHYAAEDADVTLQLHLQMWPKLEQEAGPKQVFEAIEMPLVTVISRVERNGVL 546 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 IDQ++L + S E++ L LE+ ++L+GE FNLSS KQL ILF K + KT G Sbjct: 547 IDQNILAKHSQELTTRLAELEQKAHELAGEPFNLSSTKQLQTILFEKQEIKPTKKTPGGA 606 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T+ + L ++ D P+ K ILE R LSK+KSTY D LP IN T RVHT Y A T Sbjct: 607 PSTSEKVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPQMINPITGRVHTSYHQAVTA 665 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIP++ + G++IR+AFI+ K++++ADYSQIELRI+AH+++ L Sbjct: 666 TGRLSSNDPNLQNIPVRNEEGRRIRQAFIAGADKRIVAADYSQIELRIMAHLSQDKGLLD 725 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIHR A+E+FGV + KVS + RR AK INF +IYG+S F L+ QL I EA Sbjct: 726 AFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAK 785 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 Y+ YF R+PG+ Y+E T+ GYVET+ GRR+ +INS + R ERAAIN Sbjct: 786 KYMDLYFERYPGVLRYMEATRAQAADKGYVETLDGRRLWLPDINSSNAIRRKAAERAAIN 845 Query: 890 APIQGSAADITRRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 AP+QG+AADI +RAMI+V L+ + KM++Q+HDELVFE+ ++ + ASQ I M Sbjct: 846 APMQGTAADIIKRAMIAVDGWLLQQNSDEVKMIMQVHDELVFEIHKDAVAGASQTIRELM 905 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E + + L VPL+V + +NW + Sbjct: 906 ENS----MKLDVPLQVEVGTGDNWDQ 927 >gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602] gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602] Length = 934 Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust. Identities = 369/983 (37%), Positives = 552/983 (56%), Gaps = 68/983 (6%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLL----QYTPSHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEQYKSHRPPMPDDLRSQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AE+ G AV I + DKD+ QLV+P L +T+ + + V++K+G+PP ++ Sbjct: 121 LALEAEQAGHAVLISTGDKDMAQLVTPGVTLINTMNNAILGPDEVVEKYGVPPSLIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + + ++ K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGIGGLDALYADLDKVSTLSFRGAKTMAAKLADNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++TDV + + L + + + A E KL R Sbjct: 241 DVAYLSYQLATIKTDVKLDLTCAELTVSEPD---------ADELHKLFGRY--------- 282 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 E K + E + K S + + +E T +E Q Sbjct: 283 ------------EFKRWLADVESGTWLSGKKSAGKAPAAAKKSAQAEDTTSAAVIEPNQ- 329 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ D Y I++ + +W+ L+ +F TD +D + I ++ +T + Sbjct: 330 -----LSQDGYVTILDQATLDEWIGYLKGSEVFAFDTETDGLDTLTANLIGLSFAT-EAG 383 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D V +D E+L LK E+E LK+G N+K+D+ VL Sbjct: 384 KAAYLPVAHDYLDAPVQLDRD---------EVLKQLKPILEDEKQLKVGQNLKFDRGVLL 434 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RY I ++G D ML SYVLDS HD+ S+A ++L + + +EI K+ + ++I Sbjct: 435 RYDIELKGIAFDTMLESYVLDSVSGRHDMDSLADRYLGHKTVSFEEIAGKGKNQLTFNQI 494 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V LQL L P++ E L V+ ++ P++ V+S +E TG+ IDQ Sbjct: 495 ALEQAAPYAAEDADVTLQLHQALWPRIAESESLKTVFTDIEMPLVPVLSHIERTGVLIDQ 554 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 ++L S E++ L LE ++L+ E FNLSS KQL IL+ K K P KT G T Sbjct: 555 NILAAHSKELAIRLNELENKAHELAEEPFNLSSTKQLQAILYEKQKLPILKKTPGGAPST 614 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L ++ D P+ K ILE+R L+K+KSTY D LP IN ++ RVHT Y A T TGR Sbjct: 615 NEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPQSGRVHTSYHQAVTATGR 673 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AFI+P +++ADYSQIELRI+AH++K L + F Sbjct: 674 LSSSDPNLQNIPVRNDEGRRIRQAFIAPKDYIILAADYSQIELRIMAHLSKDEGLLKAFA 733 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG +EKVS + RR AK INF +IYG+S F L+ QL IPR E+ Y+ Sbjct: 734 EGKDIHRATAAEVFGTPLEKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQRYM 793 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ + GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 794 DLYFERYPGVLEYMERTRTQASEQGYVETLDGRRLYLPDIKSSNAMRRKGAERAAINAPM 853 Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAMISV L+ ++++Q+HDELVFEV ++++ AS+ I + ME + Sbjct: 854 QGTAADIIKRAMISVADWLKQPDAPRARIIMQVHDELVFEVHKDDVEVASEKIRNLMEAS 913 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPLKV++ NW + Sbjct: 914 ----MTLAVPLKVDVGTGENWDQ 932 >gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336] gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336] Length = 951 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 378/995 (37%), Positives = 555/995 (55%), Gaps = 75/995 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRAFYA P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLVLVDGSSYLYRAFYAFPPLTNSL-GEPTGAMYGVLNMLKSLIAQVQ----PTHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+EI+ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 61 VFDAKGKTFRDEIFEQYKSHRPPMPDDLRQQIQPLHNIIKALGIPLLSVEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A ++G V I + DKD+ QLV L +T+ +D + VI K+GIPPE +V Sbjct: 121 LAVQASQQGKNVLISTGDKDMAQLVDDNIMLINTMNNSLLDRDGVIDKYGIPPELIVDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+ G+G KTA LLQ G++ I N ++ KK E + Sbjct: 181 ALMGDSSDNIPGVSGVGEKTALGLLQGIGSMAEIYANLEKVAGLSVRGAKKLGEKLSSAK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A LS L ++T+V + I + L+L N +LI + EF + +N V + Sbjct: 241 ADADLSYLLATIKTNVELDITPDQLVLGQNNQDQLIEYFARYEFKRWLNEVISG------ 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++ K E ++D+ T S+ S +T KI+ Sbjct: 295 ---------ESSLTKATQQEIKLDKTQTNSASESKSAVKKTIKID--------------- 330 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413 SY I + + W++KL+ + TD +D + + I+ + Sbjct: 331 -------RTSYETIDTQEKLNSWLEKLQQADLIAVDTETDALDPMRANLVGISFALTNGE 383 Query: 414 -----LDQKDDTSFKVET-IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIG 466 L K +T +F + + Q KN L KE L+ LK EN KIG Sbjct: 384 ACYIPLAHKQAVKEMTQTDLFTESEQNAEQFELVKNQLNKETCLAQLKPLLENPSIQKIG 443 Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTRKE---IL 521 NIKYD + + I + G D ML SYVLDS GR H++ ++++++L + E I Sbjct: 444 QNIKYDLTIFANHHIQLNGVCFDTMLQSYVLDSTGR--HNMGALSERYLGHQVIEFESIA 501 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVV 580 K + DKI+ +Q E+A E++++ ++L +L +L L+ V+ ++ P++ V+ Sbjct: 502 GKGKKQVTFDKIAIAQATEYAAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVL 561 Query: 581 SQMEITGIQID-QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 S ME G+ ID Q LLKQ S +I++ L +LE+ +Y +G +FNL+S KQL +ILFTKL Sbjct: 562 STMERNGVLIDSQALLKQ-SEKIARRLTALEQQVYQEAGAEFNLASTKQLQEILFTKLAL 620 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 P AKT G T LE + + + K ++E R L+K+KSTY D LP+ +NK+T RV Sbjct: 621 PIIAKTPKGAPSTNEDVLETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRV 680 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 HT Y A T TGRL+S +PNLQNIPIK + G+ IR+AFI+ K+I+ADYSQIELRI+A Sbjct: 681 HTSYHQAVTATGRLSSSDPNLQNIPIKNEEGRCIRQAFIARKGYKIIAADYSQIELRIMA 740 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+++ L F DIHR AAEIFG+ + +V+ + RR AK INF +IYG+S F L+ Sbjct: 741 HLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIYGMSSFGLSN 800 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL I R+ A Y+ YF R+PG+ ++ + ++ GYVET+FGRR++ EINS + Sbjct: 801 QLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQGYVETLFGRRLYLPEINSSNAIR 860 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AINAP+QG+AADI + AMI++H ++ + + +M++Q+HDELVFEV E ++ Sbjct: 861 RKGAERVAINAPMQGTAADIIKLAMIAIHNEIKKNDI--QMIMQVHDELVFEVKENKVDE 918 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 S +I ME A +L VPL V+I V +NW E Sbjct: 919 YSALIKSLMENAA----HLSVPLIVDIGVGDNWDE 949 >gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894] gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894] Length = 927 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 365/982 (37%), Positives = 553/982 (56%), Gaps = 73/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A G AV I + DKD+ QLV+P L +T+ + E V K+G+PPE ++ Sbjct: 121 LAKEAAAAGRAVLISTGDKDMAQLVTPDVTLINTMTNTVLGPEEVCAKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + N +I + K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALYANPEKIAELSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + + L ++ L++ + EF + T D +A Sbjct: 241 EVAYLSYQLATIKTDVELELSHDRLEVQQPQADELLALFRQYEFKRW------TSDVEAG 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + K A TE + +LS Sbjct: 295 KWL-------QSRGKPAAKPTETIVVEAEPEEEAVALS---------------------- 325 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ Y I++ + +Q W+++++ + TD++D + + I+ +T + Sbjct: 326 -------SERYVTILDEETLQAWIERIKNAPVVAVDTETDSLDNLTANLVGISFAT-EPG 377 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+D +L LK E+E +K+G N+K+D+ +L Sbjct: 378 LAAYIPVAHDYLDAPDQLSRD---------RVLELLKPLLEDESLVKVGQNLKFDRGILQ 428 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 YGI +RG D ML SY+LDS HD+ S++ +WL +T ++I K+ + ++I Sbjct: 429 NYGIELRGIAFDTMLESYILDSVSGRHDMDSLSSRWLKHTTITFEQIAGKGKNQLTFNQI 488 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q +A E+++V LQL L + PKL K L+++E ++ P++ V+S++E G++ID Sbjct: 489 DLEQAGRYAAEDADVTLQLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDP 548 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S EI+ L LE+ ++++GE FNLSS KQL ILF K KT G T Sbjct: 549 AVLHAHSQEIALKLTELEQKAHEIAGEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 608 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K IL++R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 609 SEEVLEELAL-DYPLPKVILQYRGLAKLKSTYTDKLPQMINPKTGRVHTSYHQAVTATGR 667 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 668 LSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLSAFA 727 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E VS + RR AK INF +IYG+S F L+ QL IPR E+ Y+ Sbjct: 728 EGKDIHRATAAEVFGLPLESVSNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYM 787 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +IN+ ++ R ERAAINAP+ Sbjct: 788 DLYFERYPGVLEYMERTRKQAKEQGYVETLDGRRLYLPDINASNAARRAGAERAAINAPM 847 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + KM++Q+HDELVFEV ++++ SQ I ME + Sbjct: 848 QGTAADIIKRAMIAVDGWLQKEQPRVKMIMQVHDELVFEVHKDDVEAVSQKIHELMENS- 906 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + L VPL V + NW E Sbjct: 907 ---MQLDVPLLVEVGSGVNWDE 925 >gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1] gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1] Length = 928 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 365/985 (37%), Positives = 556/985 (56%), Gaps = 76/985 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 +EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H A Sbjct: 5 QENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAA 59 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V+FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I Sbjct: 60 VVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVRAMGLPLLAVSGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 120 TLAREAEKVGRPVLISTGDKDMAQLVTPGITLINTMTNTVLGPDEVVTKYGVPPELIIDF 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I + K + + Sbjct: 180 LALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDVLYAQPEKIAELSFRGAKTMAAKLEQN 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E A LS +L ++TDV + E L ++ L+ K EF + V + A Sbjct: 240 KEVAYLSYQLATIKTDVALEQSCEQLEVQPPAADTLVELFKKYEFKRWTTDVESGKWLQA 299 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 +P K +A + + ++ Sbjct: 300 KGGKPAA--------KPVAAPVVEEDAEEVVSA--------------------------- 324 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 ++ + Y +++ + ++ W++KL+ +F TD++D + + + Sbjct: 325 ------LSAEHYVTVLDEETLKSWIEKLKKAPLFAFDTETDSLDNHSANMVGL------- 371 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474 SF E + V + D G +++E L LK E+E LK+G N+KYD+ Sbjct: 372 ----SFACEP-GVAAYVPVAHDYIGAPEQISRERALELLKPLLEDEKALKVGQNLKYDRG 426 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 +L YGI +RG D ML SY LDS HD+ S++++WL + T +EI K+ + Sbjct: 427 ILANYGIELRGIAWDTMLESYTLDSVAGRHDMDSLSERWLKHKTITFEEIAGKGKNQLTF 486 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQ 589 ++I Q +A E+++V LQL L + PKL E L+V+ ++ P++ V+S++E G++ Sbjct: 487 NQIDLEQAGRYAAEDADVTLQLHLKMWPKLQKREGPLNVFRNIEMPLVPVLSRIERNGVK 546 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID +L++ S EI+ L LE+ +D++GE FNLSS KQL ILF K KT G Sbjct: 547 IDPQVLQKHSEEITLRLAELEQKAHDIAGEPFNLSSTKQLQTILFEKQGIKPLKKTPGGA 606 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T+ + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T Sbjct: 607 PSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTA 665 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L + Sbjct: 666 TGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLK 725 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIHR AAE+FG+ +E VS + RR AK INF +IYG+S F L+ QL IPR E+ Sbjct: 726 AFAEGKDIHRATAAEVFGLPLESVSAEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQ 785 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 Y+ YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAIN Sbjct: 786 KYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAAAERAAIN 845 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AADI +RAMI+V L++ + +M++Q+HDELVFEV ++ + S+ I ME Sbjct: 846 APMQGTAADIIKRAMIAVDAWLQEEQPRVRMIMQVHDELVFEVHKDALDAVSKKIHELME 905 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 + + L VPL V + +NW + Sbjct: 906 SS----MALDVPLLVEVGSGDNWDQ 926 >gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] Length = 924 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 345/977 (35%), Positives = 549/977 (56%), Gaps = 63/977 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P LS G P A+ G NML L+ ++ A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLSNAQ-GEPTGALFGVVNMLRSTLKER-----PAYVAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123 D P TFR+++Y YKANRP +P+ L Q+ P+ R+ +A GI + I G EADD+I T Sbjct: 56 VDAPGKTFRDDLYDQYKANRPPMPDELRSQVEPMCRI-VEALGISILRIPGVEADDVIGT 114 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCL 182 + VTI + DKD QLV P L +T+ ++D + V+ K+G+ ++++ L Sbjct: 115 LALQGLAQDLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMDKFGVRADQIIDL 174 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD++DN+PG+ G KTAA L EY +L+ ++ A +K K EN+ E L Sbjct: 175 LALMGDTVDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKGKIG-ENLRAALERLPL 233 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 +R+LV +RTDV + L L + + P L FT+ + + A E Sbjct: 234 NRELVTIRTDVALDASPTTLALREQDVPELTELYTRYGFTQALKELGAPLPAPTAASE-- 291 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 T +G A + F+ S + + L Sbjct: 292 ----ATPSLRGTA-------------AGFARGSAEAPAAGT--------------LDPAL 320 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 Y ++ T+ +Q WV++L+ SF TD +DA ++ + ++++ + Sbjct: 321 AAPGEYETVLTTEQLQTWVERLQQAELISFDTETDALDAMRARLVGVSLAVEPGR----- 375 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 +I + H + + + +++L L+ ++ K+G + KYD VL R+G+ Sbjct: 376 ---AAYIPVG-HDYPGAPAQLPM-QQVLDALRPVLQDPAKKKLGQHGKYDLHVLRRHGVD 430 Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538 ++G+ +D ML S+VL+S + HD+ S+A ++L Y+ +++ IP ++ + Sbjct: 431 VQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYSTIKFEDVAGKGAKQIPFSQVGIDEA 490 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ L+L L+P+L+ E L VY ++ P++ V++ +E G++ID D L++ Sbjct: 491 SRYAAEDADITLRLHRALQPQLLAEPALDSVYRDIEMPLVPVLTTIEANGVRIDTDELRR 550 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S ++S +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T + L Sbjct: 551 QSQDLSSRMLAAQQKATELAGRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEEAL 610 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E I + + + ILE+R L+K++STY D LP +N T RVHT Y + TGRL+S + Sbjct: 611 EAI-AEQHELPRVILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQSGAATGRLSSSD 669 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+T+ G++IRRAF++P +L++ADYSQIELRI+AH+++ L + FE D+ Sbjct: 670 PNLQNIPIRTEDGRRIRRAFVAPEGCQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADV 729 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG +E+V+P RR AK INF ++YG+S F LA L I R +A DY+ YF Sbjct: 730 HRATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQDYVALYFS 789 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ +++E+ + R GYVET+FGRR++ ++I++ +R ERAAINAP+QG+AA Sbjct: 790 RYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAA 849 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI +RAM+ V + L D +M+LQ+HDELVFE + +V M +A Sbjct: 850 DIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEDLRLQVVERMSQAA----K 905 Query: 958 LRVPLKVNIKVSNNWQE 974 LRVPL V+ + +NW E Sbjct: 906 LRVPLVVDTGIGSNWDE 922 >gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] Length = 931 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 363/983 (36%), Positives = 548/983 (55%), Gaps = 71/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P D +P NA+ G NML ++ ++ + AV Sbjct: 6 DNPLILIDGSSYLYRAFHAYPETMSNGD-IPTNAVYGVVNMLRSMM----RQFSSDRMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I + G EADD+I T Sbjct: 61 VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A + G V I + DKD+ QLV L +T+ +D + V++K+GIPPE ++ Sbjct: 121 LAYQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDRDGVVEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G+LE + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTAKALLQGIGSLEKLYENLDDIAPLGFRGSKTMAKKLVDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + E L+ + N LI L F +N + D ++ Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKNEPNKDELIKLYGQLVFKSWLNEL---LDGGSS 297 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +E E G A+ S+ S T ++++ Sbjct: 298 VVE-------ADEKSGAAVS--------------SAKSTSTVEMDT-------------- 322 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 S I+ Y I++ W++KL+ +F TD++D + + ++ +T ++ Sbjct: 323 -SAVTIDRSQYETILDEATFNTWLEKLKAADVFAFDTETDSLDYMVANLVGLSFAT-EEG 380 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L+ LK E++ K+G N+KYD VL Sbjct: 381 VAAYVPVAHDYLDAPQQLDRDW---------VLAQLKPILEDDTQAKVGQNLKYDASVLA 431 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RY I M+G + D ML SYV +S HD+ S+A ++L ++ ++I K + ++I Sbjct: 432 RYNIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 491 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q +A E+++V L+L L + E+L +YE ++ P++ V+S++E TG+ ID Sbjct: 492 ELDQASPYAAEDADVTLRLHNRLMANIEKDEQLKAIYEEIEVPLVPVLSRIERTGVLIDD 551 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L S EI++ L LE+ Y+++ ++FN++SPKQL +LF K+ P KT +G T Sbjct: 552 MKLAAQSQEIAQRLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 611 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 612 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTATGR 670 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ D G++IR+AFI+P K+++ DYSQIELRI+AH++ L F+ Sbjct: 671 LSSTDPNLQNIPIRNDEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQ 730 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH AAEI G I++VS + RR AK +NF +IYG+S F LA QL IPR EA DY+ Sbjct: 731 QGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYM 790 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ +Y+E T++ + GYVETIFGRR+H EI S R ERAAINAP+ Sbjct: 791 NTYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 850 Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + ++ + K+L+Q+HDELVFEV E +T + ME A Sbjct: 851 QGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVQESALTEIESKVQQLMESA 910 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL +NW + Sbjct: 911 AA----LDVPLVAEAGHGDNWDQ 929 >gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166] Length = 914 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 365/983 (37%), Positives = 538/983 (54%), Gaps = 91/983 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G P A+ G NML L R++ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTS-TGKPTGAVKGVLNMLLSL----RRQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ ++ +YK++RP +P+ L Q+ + + +A G+P + ++G EADD+I T Sbjct: 61 AKGPTFRDALFENYKSHRPPMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 G V I + DKD+ QLV P L +T+ DIE V K+G+ PE ++ AL Sbjct: 121 QCAALGRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDIEGVKAKFGVGPELIIDFLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIK------QKKRRENILEYAET 239 GD +DNIPG+PG+G KTA LL G L+ + + ++ K + E+ + Sbjct: 181 GDKVDNIPGVPGVGEKTACGLLNGIPGGLKGLYEHLDQVAGLPIRGAKSLGAKLEEHRDA 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A +S +L ++ DV + + + L+ + + LI+ + LEF + ++ + N Sbjct: 241 AFMSYELATIKIDVALDVEVGDLMPGEPHREALIALYRELEFKQWLDELLREAKAAGENC 300 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 E + +G +I+ E +Q+ +L +Q Sbjct: 301 E--------VQPEGCSIQAE---------AQYETLLEQA--------------------- 322 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 D ++W+ +L+ +F T ++DA ++ + + Sbjct: 323 ----------------DFERWLARLKAAECFAFDTETTSLDAQRAELVGV---------- 356 Query: 420 TSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 SF VE ++ L H+ + L +L LK E+ KI + KYD VL Sbjct: 357 -SFAVEPGQAAYVPLR-HSYMGVPQQLELDA-VLGALKPLLEDPAKTKICQHGKYDMNVL 413 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 YGI MRG D ML SYVLD+ + HD+ S+A K+L ++I + D+ Sbjct: 414 MHYGIEMRGMAFDTMLESYVLDATATRHDMDSLALKYLGRGTIRFEDIAGKGAKQLTFDQ 473 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 I+ Q +A E+++V L+L L KL LL V ++ P++ V++++E G +D Sbjct: 474 IAIEQAGPYAAEDADVTLRLHQTLLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVD 533 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 LL Q S E+ L+ LE +D++GE+FNL SPKQL IL+ KL P +KT GQ Sbjct: 534 AQLLGQQSVELGDKLVQLEREAFDIAGEEFNLGSPKQLCAILYDKLGCPVISKTAGGQPS 593 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T L ++ D P+ K I++ R LSK+K TY D LP IN RT R+HT Y A T TG Sbjct: 594 TAESVLAELAEQDYPLPKVIMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATG 653 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+T G++IR+AF++ P KL++ADYSQIELRI+AH+A+ L F Sbjct: 654 RLSSSDPNLQNIPIRTAEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLLHAF 713 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 +N LD+HR AAE+FGV +E+VS RR AK INF +IYG+S F LA Q+ + R EA +Y Sbjct: 714 QNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAFGLAKQIDVGRKEAQEY 773 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I RYF R+PG+ Y+E+T+ + GYVET+FGRR++ EINS ++R ER AINAP Sbjct: 774 IDRYFARYPGVLAYMERTRTQAAEQGYVETLFGRRLYLPEINSKNGAMRKGAERTAINAP 833 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG+AADI +RAMI+V L+D L +++LQ+HDELV EV E+ + + I M A Sbjct: 834 MQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDELVLEVREDLVEQVREAICPLMSGA 893 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL V V N+W E Sbjct: 894 A----QLDVPLLVEAGVGNSWDE 912 >gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] Length = 933 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 373/983 (37%), Positives = 551/983 (56%), Gaps = 69/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYQP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRTQIEPLHKMVKAMGLPLLVTPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AE G V I + DKD+ QLV+P L +T+ + + V K+GIPPE ++ Sbjct: 121 LALEAEMAGHPVLISTGDKDMAQLVTPNVTLINTMNNTVLGPQEVCDKYGIPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+PG+G KTA LLQ G L+ + N I K + + Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGLGRLDVLYDNLGSIATLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS KL ++T+V + + L + + L K EF + + V T A Sbjct: 241 EIAYLSYKLATIKTNVELEVSYADLNMSAPDIDVLQQLFKRYEFKRWLADVET-----GA 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +E KG ++T K++ S+++++ PQ Sbjct: 296 WLE---------NKKGSGVKTA----GVAKSA--SAVAEKPKAAAEAMLPQ--------- 331 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 DSY I++ W+Q+L+ +F TD +D + I ++ + + Sbjct: 332 --------DSYVAILDEDTFVDWLQRLKKANVFAFDTETDGLDTLSANLIGLSFA-IAPG 382 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D + S +L LK E+E LK+G N+K+D VL Sbjct: 383 EAAYLPVAHDYLDAPAQLDRAS---------VLERLKLLLEDEKVLKVGQNLKFDMGVLA 433 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RYGI++RG D ML SYVLDS HD+ ++A ++L + T +EI K+ + ++I Sbjct: 434 RYGINLRGIAYDTMLESYVLDSVGGRHDMDNLADRYLGHKTITFEEIAGKGKNQLTFNQI 493 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + +Q +A E+++V L+L L + P+L +LL V+ +D P++ V+S +E TG+ ID Sbjct: 494 ALAQAALYAAEDADVTLRLHLAMWPQLKQSAELLRVFNEIDMPLVPVLSHIERTGVLIDP 553 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++K L LE ++L+GE FNL S KQL IL+ K K P KT G T Sbjct: 554 AILSVHSQELTKRLGELEIQAHELAGEPFNLVSLKQLQAILYEKQKLPVLKKTPGGAPST 613 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L ++ D P+ K ILE+R L+K+K+TY D LP IN + RVHT Y A T TGR Sbjct: 614 NEEVLAELAL-DYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSYHQAVTATGR 672 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D ++IR+AFI+P ++++ADYSQIELRI+AH+++ L + F Sbjct: 673 LSSSDPNLQNIPVRNDEDRRIRQAFIAPEGYRIVAADYSQIELRIMAHLSQDAGLLKAFA 732 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FGV ++KV+ + RR AK INF +IYG+S F LA QL +PR EA Y+ Sbjct: 733 EGKDIHRATAAEVFGVPLDKVASEQRRSAKAINFGLIYGMSAFGLARQLGVPRGEAQRYM 792 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 RYF R+PG+ +Y+E+T+ + GYV T+ GRR++ + S R ERAAINAP+ Sbjct: 793 DRYFERYPGVLDYMERTRQQAAEQGYVTTLDGRRLYLPDARSSNGMRRKAAERAAINAPM 852 Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAMI V +++ + +M++Q+HDELVFEV E I +SQ I ME + Sbjct: 853 QGTAADIIKRAMIEVDAWIQEQGQPLVRMIMQVHDELVFEVHESVIDASSQRIRELMEGS 912 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPLKV++ V NW E Sbjct: 913 ----MALAVPLKVDVGVGANWDE 931 >gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638] gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638] Length = 930 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 365/981 (37%), Positives = 552/981 (56%), Gaps = 72/981 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ GLP A+ G NML L+ + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GLPTGAMYGVLNMLRSLILQYQ----PSHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V K+G+PPE ++ Sbjct: 121 LAREAEKLGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVATKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + + +I R + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKTIAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS KL ++TDV + + E L ++ L+ K EF + I V A Sbjct: 241 EVAYLSYKLATIKTDVELELTCEQLEVQQPIAEELLGLFKQYEFKRWITDVEAGKWMQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P +DT + ++ + T+ Sbjct: 301 GSKPAA----------------KPKDTIVVDAEDEVEEEATT------------------ 326 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ D+Y ++ + WV+KL+ +F TD++D + + ++ +T + Sbjct: 327 -----LSYDNYEVVLEESQLIAWVEKLKKAPVFAFDTETDSLDNISANMVGLSFAT-EPG 380 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476 V ++D N +++E +L LK E+E K+G N+K+D+ +L Sbjct: 381 MAAYVPVAHDYLD----------APNQISRERVLELLKPLLEDEKAKKVGQNLKFDRGIL 430 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 YGI +RG D ML SY+L+S HD+ S++ +WL + T +EI K+ + ++ Sbjct: 431 QNYGIELRGIAYDTMLESYILNSVAGRHDMDSLSDRWLKHKTVTFEEIAGKGKNQLTFNQ 490 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 I+ + +A E+++V LQL L + PKL E L+V+E ++ P++ V+S++E G++ID Sbjct: 491 IALEEAGRYAAEDADVTLQLHLKMWPKLQKQEGPLNVFEHIEMPLVPVISRIERNGVKID 550 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +L + S E++ L LE+ ++++GE FNLSS KQL ILF K KT G Sbjct: 551 PAVLHKHSEELALRLSELEQKAHEIAGEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPS 610 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+ + LE++ D P+ K IL++R L+K+KSTY D LP IN +T RVHT Y A TG Sbjct: 611 TSEEVLEELAL-DYPLPKVILQYRGLAKLKSTYTDKLPLMINPKTSRVHTSYHQAVAATG 669 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S EPNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 670 RLSSTEPNLQNIPVRNEEGRRIRQAFIAPKDYLIVSADYSQIELRIMAHLSRDKGLLTAF 729 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIHR AAE+FG+ ++ V+ RR AK INF +IYG+S F L+ QL IPR E+ Y Sbjct: 730 AEGKDIHRATAAEVFGLPLDSVTNDQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKY 789 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP Sbjct: 790 MDLYFERYPGVLEYMERTRAQAKEKGYVETLDGRRLYLPDITSSNAARRAGAERAAINAP 849 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG+AADI +RAMI+V LE K +M++Q+HDELVFEV E++ S+ I ME + Sbjct: 850 MQGTAADIIKRAMIAVDAWLEKDKPRVRMIMQVHDELVFEVHHEDLEAVSKKIHELMEGS 909 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 + L VPL V + NW Sbjct: 910 ----MTLDVPLLVEVGSGENW 926 >gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2] gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2] Length = 940 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 370/987 (37%), Positives = 548/987 (55%), Gaps = 84/987 (8%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K L LVDGSSF++RAF+A P L+ DG P AI G NML KL R+E A Sbjct: 21 KSKSLILVDGSSFLFRAFHALPPLTAP-DGTPTGAIHGVINMLQKL----RREENPDRMA 75 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V+FD P TFR+E+YP+YKA RP +P+ L Q+ V +A G P + + G EADD+I Sbjct: 76 VVFDAPGPTFRDELYPEYKAQRPPLPDDLRVQIEPVHELVRALGFPLLCVSGVEADDVIG 135 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T + A + G +V + + DKD QLV+ L +T+ +D + K+GI + + Sbjct: 136 TLMHQARQNGESVLVATADKDFAQLVTEGIRLVNTMTNTVLDEAAIEAKYGITAAQFIDY 195 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 L GD++DN+PG+PG G KTAA L E+ +L+N++ +A +IK K E++ E + Sbjct: 196 LTLVGDTVDNVPGVPGCGPKTAAKWLNEWQSLDNLMAHADQIKGKVG-ESLRAAKEFLPI 254 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 R+LV +RTD + I L L +E+ D DA Sbjct: 255 GRELVTIRTDCDLPIALADLAVEEP-------------------------DVDAVRALAE 289 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 +NT QFS S + ++ TP + Q P Sbjct: 290 KFGLNTLRR------------------QFSEASSVPAPVS---TPSQETRRTSSDDGQLP 328 Query: 363 INNDS-YTKIVNTKDIQQWVQKLET--------IGSASFKIITDTMDAFHSKPIAIAIST 413 +++ Y I+ D Q+W+++++ + +F TD++D F + + ++ S Sbjct: 329 LSDPPMYETILTDADWQRWLEQIKNADKKTDKKMDWVAFDTETDSLDLFAGRIVGVSFSI 388 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYD 472 D + ++ L+ H + + L ++ +L+ LK + E+ K+ N K+D Sbjct: 389 EDNR--------AAYVPLA-HNYPGAPAQ--LDRDTVLADLKPWLEDASRTKVMQNAKFD 437 Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSI 528 +L +GI++RG D ML SYVLDS + HD+ S+A K+L + T ++I ++ Sbjct: 438 SHMLANHGITLRGVLFDTMLESYVLDSTATRHDMDSLAAKYLGRSTITFEDIAGKGAKAL 497 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587 +I Q +A E+++V QL L PKL VE L VYE +++P+I+V+ ME G Sbjct: 498 SFPEIHLEQAGPYAAEDADVTGQLQQCLWPKLSVEPDLRSVYETIEQPLIEVLVAMERAG 557 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 +++D+ L I + + ++E+ + +G +FNL S KQL ++LF +LK P G KT Sbjct: 558 VRVDRGELAIQGKAIGERIAAVEQAAFKEAGREFNLGSTKQLKELLFDELKLPVGKKTPK 617 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G+ T + L ++ G +P+ IL++R LSK+KSTY D LP I+ T RVH+ + A Sbjct: 618 GEPSTDEEALGEL-VGSHPLPALILDYRGLSKLKSTYIDRLPEDIHTHTGRVHSAFHQAV 676 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S PNLQNIPI+++ G++IR+AF++ P KLISADYSQIELRI+AH+++ L Sbjct: 677 TATGRLSSSNPNLQNIPIRSEEGRRIRQAFVADPGCKLISADYSQIELRIMAHLSEDERL 736 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F DIHR AAE+FGV +VS RR AK INF +IYG+S F LA QL +PR E Sbjct: 737 CAAFAAGEDIHRATAAEVFGVKEVEVSDNQRRAAKAINFGLIYGMSAFGLAKQLDVPRGE 796 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A YI YF R+PG+ +Y+E+ + RQ GYVET+FGRR++ EI+S R ER A Sbjct: 797 AQAYIDLYFARYPGVAKYMERMRQQARQMGYVETVFGRRLYLPEIHSRNGQRRQYAERTA 856 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AADI + AMI++HK L A +M+LQ+HDEL+FEVPE ++ II Sbjct: 857 INAPMQGTAADIIKIAMIALHKLLVVPGRA-RMILQVHDELIFEVPESDVAEIEPIIRAQ 915 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M A L VPL+V I + +W E Sbjct: 916 MTGAA----KLNVPLEVGIGIGRSWAE 938 >gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP] gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP] Length = 930 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 369/982 (37%), Positives = 557/982 (56%), Gaps = 72/982 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P NA+ G NML +L+ + +H AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPSLTNAA-GEPTNAMYGVLNMLKRLISQVQ----PTHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFRNE++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRNEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKP 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + + L+L + +LI + EF + +N V D Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 TTE +K +Q+ + S S + E TP ++Q Sbjct: 300 --------QTTEQP-------------VKMNQYQATSQDQSAV--ENTP------KIQ-- 328 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 I+ Y ++ D+ +W++KL T + TD++D + + I+ + L+ + Sbjct: 329 ----IDRTKYETLLTQADLTRWIEKLNTAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 ++ ++D + T + ST L+ +K EN KIG NIK+D+ + R Sbjct: 384 AAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPDIHKIGQNIKFDESIFAR 434 Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 +GI ++G E D ML+SY L+S GR H++ +A+++L + + I K+ + ++I Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESIAGKGKNQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ ID Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQQEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 + L S EI+ L +LEE Y+L+G+ FNL+S KQL +ILF KL P KT G T Sbjct: 553 NALFMQSNEIATRLTALEEQAYELAGQPFNLASTKQLQEILFDKLGLPILQKTPKGAPST 612 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T TGR Sbjct: 613 NEEVLEEL-AYSHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH++ L F Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A Y+ Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLDISRPDAKKYM 791 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+P + +++ + + GYVET+FGRR++ +INS + R ER AINAP+ Sbjct: 792 DLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI + + + H +M++Q+HDELVFEV E++ + I ME A Sbjct: 852 QGTAADIIKRAMIKLDEVIY-HDPDIEMIMQVHDELVFEVRSEKVEFFREQIKQQMEDAS 910 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + V NW E Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928 >gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127] gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127] Length = 930 Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust. Identities = 368/982 (37%), Positives = 558/982 (56%), Gaps = 72/982 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + +H AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQ----PTHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + + L+L + +LI + EF + +N V D Sbjct: 242 NADLSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVINGADSIT-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 TTE +K +Q+ + S S + E TP ++Q Sbjct: 300 --------QTTEQP-------------VKMNQYQATSQDQSAV--ENTP------KIQ-- 328 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 I+ Y ++ D+ W++KL T + TD++D + + I+ + L+ + Sbjct: 329 ----IDRTKYETLLTQADLTHWIEKLNTAKLIAVDTETDSLDYISANLVGISFA-LENGE 383 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 T ++ ++D + T + ST L+ +K EN + KIG NIK+D+ + R Sbjct: 384 ATYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434 Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 +GI ++G E D ML+SY L+S GR H++ +A+++L + + + KS + ++I Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ ID Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L S EI+ L +LE+ Y L+G+ FNL+S KQL +ILF KL P KT G T Sbjct: 553 DALFIQSNEIATRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPST 612 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE+++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T TGR Sbjct: 613 NEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH++ L F Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A Y+ Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYM 791 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+P + +++ + + GYVET+FGRR++ +INS + R ER AINAP+ Sbjct: 792 NLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI + + + H +M++Q+HDELVFEV E++ + I ME A Sbjct: 852 QGTAADIIKRAMIKLDEVIR-HDPNIEMIMQVHDELVFEVRSEKVAFFREQIKQHMESAA 910 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + V NW E Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928 >gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220] gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220] Length = 928 Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust. Identities = 364/982 (37%), Positives = 555/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GAPTGAMYGVLNMLRSLILQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI-----KQKKRRENILEY-A 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + + +I + K LE Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAESDKIAGLTFRGAKNMAGKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVKQPIADELLGLFKQYEFKRWVADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P T I E TP++ Sbjct: 301 GAKPAAKPQET--------------------------------IVVEATPEE-------- 320 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ D+Y I++ +++W+ KL+ +F TD++D + + ++ + ++ Sbjct: 321 -PATALSYDNYVTILDEATLEEWIAKLKKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+D L+ LK E+E+ K+G N+KYD+ +L Sbjct: 379 VAAYVPVAHDYLDAPDQISRDRA---------LALLKPLLEDENAHKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 Y I +RG D ML SY+L+S HD+ S++ +WL + T +EI K+ + ++I Sbjct: 430 NYDIELRGIVFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E +D P++ V+S++E G++I Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQKHKGPLNVFENIDMPLVPVLSRVERNGVKIAP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S E++ L LE+ ++++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEELTLRLNELEQKAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP INK+T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ + S+ I ME Sbjct: 849 QGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHKDDLESVSKKIHQLMEN-- 906 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + ++ VPL V + NW + Sbjct: 907 --ETHIDVPLLVEVGSGENWDQ 926 >gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1] gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1] Length = 928 Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust. Identities = 363/983 (36%), Positives = 544/983 (55%), Gaps = 74/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLLAQYNP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDELRAQIEPLHEMVRAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK+G +V I + DKD+ QLV+P L +T+ + E V +K+G+PP ++ Sbjct: 121 LALEAEKKGLSVLISTGDKDMAQLVTPAITLINTMSNTILGPEEVEQKYGVPPALIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 A+ GDS DNIPG+PG+G KTA LLQ G+++ I N ++ K + + Sbjct: 181 AMMGDSSDNIPGVPGVGEKTAQALLQGLGSMQTIYDNLDKVADLGFRGAKTMATKLEQNR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++TDV + +P E L + + N L + EF + ++ + Sbjct: 241 DVAFLSYQLATIKTDVELALPCEELTVTEPNVEALQTLFSRYEFKRWLSDLQDGKWLQGK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 NT K ++ D + + SS+ Sbjct: 301 KS-------NTQAQKALS-------DEPVAVPETSSV----------------------- 323 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + ++Y I++ W++KL+ +F + TD +D + + I+ + + Sbjct: 324 -----LPTENYVTILDQDLFDSWLEKLKNSEVFAFDLETDALDTLSANIVGISFA-IAPG 377 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D + + +L+ LK E++ K+G N+KYD+ VL Sbjct: 378 EAAYLPVAHDYLDAPEQLDRAA---------VLAQLKPLLEDDSAWKVGQNLKYDRGVLK 428 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 Y I + G + D ML SY+L+S HD+ S+A +WL++ T +EI K+ + ++I Sbjct: 429 NYDIELAGIKFDTMLESYILNSVVGKHDMDSLAARWLNHKTVTFQEIAGKGKNQLTFNQI 488 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V LQL L + P+L E V+E+++ P++ V+S++E G+ IDQ Sbjct: 489 ALEQASHYAAEDADVTLQLHLKMWPELEKEAGPRKVFEQIEMPLLTVISRIERNGVLIDQ 548 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L Q S E++ L LE ++L+GE FNLSS KQL ILF K KT G T Sbjct: 549 AILAQHSKELTARLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPST 608 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + L ++ D P+ K ILE R LSK+KSTY D LP IN + RVHT Y A T TGR Sbjct: 609 SEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPLSGRVHTSYHQAVTATGR 667 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AF++ ++++ADYSQIELRI+AH+++ L F Sbjct: 668 LSSADPNLQNIPVRNDEGRRIRQAFVAAKGYRIVAADYSQIELRIMAHLSQDKGLLDAFA 727 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR A+E+FGV ++KVS + RR AK INF +IYG+S F L+ QL I EA Y+ Sbjct: 728 QGEDIHRATASEVFGVPLDKVSAEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 787 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ Y+E T+ GYVETI GRR+ +I S + R ERAAINAP+ Sbjct: 788 DLYFERYPGVLRYMENTRQLAASKGYVETIEGRRLWLPDIKSSNAIRRKAAERAAINAPM 847 Query: 893 QGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAMI+V LE + +M++Q+HDELVFEV E + ASQ I ME + Sbjct: 848 QGTAADIIKRAMIAVDAWLEQQNDNSVRMIMQVHDELVFEVKAEAVEAASQKIRALMEGS 907 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPL V + V +NW E Sbjct: 908 ----VQLDVPLLVEVGVGDNWDE 926 >gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] Length = 930 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 366/982 (37%), Positives = 559/982 (56%), Gaps = 72/982 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P +A+ G NML L+ + +H AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTSAMYGVLNMLKSLISQVQP----THIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + + L+L + +LI + EF + +N V D Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 TTE +K +Q+ + S S + E TP ++Q Sbjct: 300 --------QTTEQP-------------VKMNQYQATSQDQSAV--ENTP------KIQ-- 328 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 I+ Y ++ D+ +W++KL + + TD++D + + I+ + L+ + Sbjct: 329 ----IDRTKYETLLTQADLTRWIEKLNSAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 ++ ++D + T + ST L+ +K EN + KIG NIK+D+ + R Sbjct: 384 AAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNSHKIGQNIKFDESIFAR 434 Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 +GI ++G E D ML+SY L+S GR H++ +A+++L + + + KS + ++I Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ ID Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L S EI+ L +LE+ Y L+G+ FNL+S KQL +ILF KL P KT G T Sbjct: 553 DALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPST 612 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE+++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T TGR Sbjct: 613 NEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH++ L F Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLISAFS 731 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A Y+ Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYM 791 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+P + +++ + + GYVET+FGRR++ +INS + R ER AINAP+ Sbjct: 792 NLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI + + + H +M++Q+HDELVFEV E++ + I ME A Sbjct: 852 QGTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA 910 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + V NW E Sbjct: 911 ----ELVVPLIVEVGVGKNWDE 928 >gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus influenzae 10810] Length = 935 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 368/985 (37%), Positives = 558/985 (56%), Gaps = 73/985 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEHYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + + L+L + +LI + EF + +N V D Sbjct: 242 NAALSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVMNGSDSIT-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS---EQTPQKLFLERL 355 TTE +K +Q+ + S S + + E TP ++ Sbjct: 300 --------QTTEQP-------------VKINQYQATSPAQSSVGNSAVENTP------KI 332 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 Q I+ Y ++ D+ +W++KL T + TD++D + + I+ + L+ Sbjct: 333 Q------IDRTKYETLLTQADLTRWIEKLNTAKLIAVDTETDSLDYMSANLVGISFA-LE 385 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + ++ ++D + T + ST L+ +K EN + KIG NIK+D+ + Sbjct: 386 NGEAAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESI 436 Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 R+GI ++G E D ML+SY L+S GR H++ +A+++L + + + KS + Sbjct: 437 FARHGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTF 494 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589 ++I Q E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ Sbjct: 495 NQIPLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVL 554 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID D L S EI+ L +LE+ Y L+G+ FNL+S KQL +ILF KL P KT G Sbjct: 555 IDSDALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGA 614 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + LE+++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T Sbjct: 615 PSTNEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTA 673 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH++ L Sbjct: 674 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLIN 733 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIHR AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A Sbjct: 734 AFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQ 793 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 Y+ YF R+P + +++ + + GYVET+FGRR++ +INS + R ER AIN Sbjct: 794 KYMDLYFQRYPSVQQFMTDIREKAKTQGYVETLFGRRLYLPDINSSNAMRRKGAERVAIN 853 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AADI +RAMI + + + H +M++Q+HDELVFEV E++ + I ME Sbjct: 854 APMQGTAADIIKRAMIKLDEVIH-HDPNIEMIMQVHDELVFEVRSEKVAFFREQIKQHME 912 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V + V NW E Sbjct: 913 SAA----ELVVPLIVEVGVGQNWDE 933 >gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] Length = 944 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 358/998 (35%), Positives = 565/998 (56%), Gaps = 83/998 (8%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + + L LVDGSS++YRA++A P L R +G P AI G NML KL R + A + Sbjct: 3 ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 57 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 A +FD TFR+E+YP YK +R +P+ L Q+ + A +A G P + + G EADD+I Sbjct: 58 ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVI 117 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T T A +EG + + DKDL QLV+ L +T+ E +D V+ K+G+PPEK+V Sbjct: 118 GTLTERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPEKIVD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEYAET 239 +L GD++DN+PG+P +G KTA L EYG+L+N++ A IK + N L++ Sbjct: 178 YLSLIGDTVDNVPGVPKVGPKTAVKWLGEYGSLDNVIARAGEIKGVVGENLRNTLDWLPK 237 Query: 240 AR--LSRKL-VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 R L+ K+ L T+VP LE L+ + +L+ F F + A Sbjct: 238 GRELLTVKIDCDLATEVPT---LEALVDGGEDRAKLVDFFSRYGFKTWLREAAGE----- 289 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS---SLSDQTSKINSEQTPQKLFLE 353 + T + G A R Q++ + Q S + E P ++ Sbjct: 290 --------SLPDTRSVGAA------RKAATPVKQYAPEAAAQQQASLFDVETPPAEV--- 332 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 Y + ++ W++ L+T+ T ++D ++ + I++S Sbjct: 333 -------------KYETVTTEAQLESWMRLLDTVELVCIDTETTSIDPMLAQLVGISLSV 379 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNT---LTKE-ILSYLKKFFENEHFLKIGHNI 469 + +I ++ H D +G + L++E +L+ +K + E+E K+G ++ Sbjct: 380 QPG--------QACYIPVA-HRGPDVSGLDNAAQLSREAVLARMKLWLEDETRKKVGQHL 430 Query: 470 KYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRK 525 KYD V +GI++RG D ML SYVL S R+ H + ++A++ L + T +E+ Sbjct: 431 KYDAHVFANHGIALRGIAHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGA 489 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQME 584 + I D+++ + E+A E++++ L+L L PK+ + KL +VYE+++ P V+ +ME Sbjct: 490 AQIGFDEVALDRATEYAAEDADITLRLHRALYPKVTEDDKLRYVYEQIEMPTSIVLQKME 549 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 G+ +D + L + SAE+ + LL LE+ + L+G+ FNL+SPKQ+G++ FT+LK P K Sbjct: 550 RNGVLVDAERLARQSAELGQRLLELEQQAFALAGQPFNLNSPKQIGELFFTQLKLPVVKK 609 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 T +G T + L+++ D P+ K +L++R L+K+KSTY D LP +N +T RVHT Y Sbjct: 610 TASGAPSTDEEVLQKL-AEDYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYG 668 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 A+ +TGRLAS +PNLQNIP++T+ G++IR AF++P ++SADYSQIELRI+AH+++ Sbjct: 669 QATAVTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSED 728 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + F D+HR AAE+FGV +V+ + RR+AK INF +IYG+S F LA+ L I Sbjct: 729 EGLMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIG 788 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R A YI RYF R+PG+ Y+++T+ + GYVET+FGRR+ +IN R E Sbjct: 789 RDAAKLYIDRYFARYPGVARYMDETRQVAHERGYVETVFGRRLWLPDINGGNGPRRQAAE 848 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLA--------TKMLLQIHDELVFEVPEEE 936 RAAINAP+QG+AAD+ + +M++V LE A T++++Q+HDELV EVP++E Sbjct: 849 RAAINAPMQGTAADLIKLSMLAVQDWLEGSPNAGKPGVPMRTRLVMQVHDELVLEVPQDE 908 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + + M +LRVPL + V +NW+E Sbjct: 909 LARVRERLPELMCDVA----SLRVPLVAEVGVGSNWEE 942 >gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4] gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4] Length = 930 Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust. Identities = 366/983 (37%), Positives = 547/983 (55%), Gaps = 72/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRAF+A P + + +P NA+ G NML +++ + IA V Sbjct: 6 ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A ++G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L + N I K + + + Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLADNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + E L+ + + LI L F +N + Sbjct: 241 DNAVLSYELATIKLDVELKETPESLLKTEPSIDELIKLYGQLTFKSWLNELLE------G 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 V D +T +G + +E+D DT Sbjct: 295 GTGVVEADESTGVVRGGSASSELDMDT--------------------------------- 321 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 S I+ Y I++ W+ KL+ +F TD++D + + ++ +T D+ Sbjct: 322 -SAVKIDRSQYQTILDEASFYTWLDKLKASDLFAFDTETDSLDYMVTNLVGVSFAT-DEG 379 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + ++D +D +L LK E++ K+G N+KYD VL Sbjct: 380 VAAYVPLAHDYLDAPQQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDASVLA 430 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ ++I K+ + ++I Sbjct: 431 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 490 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQ 592 ++ +A E+++V L+L L + +K L VYE ++ P++ V+S++E TG+ ID Sbjct: 491 DLNEAAPYAAEDADVTLRLHNRLAANIEQDKKLKAVYEEIEMPLVPVLSRIERTGVLIDD 550 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L S EI+ L LE+ Y+++ ++FN++SPKQL +LF K+ P KT +G T Sbjct: 551 MKLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 610 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 611 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 669 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L F Sbjct: 670 LSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFR 729 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH AAEI GV+IE VS + RR AK +NF +IYG+S F LA QL IPR EA Y+ Sbjct: 730 DGKDIHTATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 789 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 +YF R+PG+ +Y+E T++ + GYVETIFGRR+H EI S R ERAAINAP+ Sbjct: 790 DKYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPM 849 Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + +E+H K+L+Q+HDELVFEV E ++ + ME A Sbjct: 850 QGTAADIIKKAMLLVGRWIEEHGDGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESA 909 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L+VPL + +NW + Sbjct: 910 A----ELKVPLVADAGHGDNWDQ 928 >gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114] gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Vibrio fischeri ES114] Length = 932 Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust. Identities = 362/983 (36%), Positives = 549/983 (55%), Gaps = 70/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N LVDGSS+++RA++A P + DG P A+ G NML LL+ + IA V Sbjct: 6 DNPFILVDGSSYLFRAYHAAPNFTNG-DGQPTGAVYGVINMLRSLLKQFETDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFRN++YP+YKANRP +P+ L Q+ + +A G+P + I G EADD+I T Sbjct: 61 IFDAKGKTFRNDMYPEYKANRPPMPDDLRCQIEPLHKLIKAMGLPLVSIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A K G V I + DKD+ QLV L +T+ +D E V++K+GI PE ++ Sbjct: 121 LASQASKAGIPVLISTGDKDMAQLVDENVTLINTMTNVIMDPEGVVEKFGIGPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L+ + + I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTAKALLQGIGGLDALYEHLDDIAPLGFRGSKTMAKKLIDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++ DV + E + ++ N LI + F + + + D Sbjct: 241 EGAYLSYELATIKLDVELDKTPEEFVKQEPNVDELIQMFGQMNFKRWLTEMLDGSDGKIV 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + E ++T+ + A E E+ + S++ + Sbjct: 301 SHETSSNSVSTSSKQDDA-EEELIVAAQVDRSKYET------------------------ 335 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ + W+ KL A+F TD++D + I ++ + +++ Sbjct: 336 -------------ILTKEAFSVWLDKLNNADVAAFDTETDSLDYMVANLIGLSFA-VEEG 381 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D +D +L LK + E+++ K+G N+KYD VL Sbjct: 382 EAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPYLEDDNKAKVGQNLKYDASVLA 432 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RY I M+G + D ML SYV +S H++ S+A ++L + + +EI K + ++I Sbjct: 433 RYDIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E++++ L+L +L KL EKL V+ ++ P++ V+S+ME G+ ID Sbjct: 493 ALEQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVSVLSRMERKGVYIDD 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 LL S EI + L LE+ ++++GE+FN++SPKQL ILF K++ P KT +G T Sbjct: 553 MLLSAQSVEIGQRLDELEKAAFEVAGEEFNMNSPKQLQTILFEKMELPVIKKTPSGAAST 612 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 613 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 671 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH+++ L F Sbjct: 672 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFS 731 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH AAE+ GV+IE+V+ + RR AK INF +IYG+S F LA Q+ IPR EA DY+ Sbjct: 732 AGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINFGLIYGMSAFGLAKQIGIPRGEAQDYM 791 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ +Y+E+T+ + GYVET++GRR+H EIN+ R ERAAINAP+ Sbjct: 792 NVYFERYPGVMQYMEETRLLATEQGYVETLYGRRLHLPEINARNGMRRKAAERAAINAPM 851 Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AMI V + +E + K +L+Q+HDELVFEV E+ + + + ME+A Sbjct: 852 QGTAADIIKKAMILVDEWVETEGKDRVNLLMQVHDELVFEVKEDALDEVTTKVRELMEQA 911 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL NNW E Sbjct: 912 A----QLDVPLVAEAGFGNNWDE 930 >gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846] Length = 930 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 368/982 (37%), Positives = 557/982 (56%), Gaps = 72/982 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + +H AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQP----THIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + + L+L + +LI + EF + +N V D Sbjct: 242 NADLSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVINGADSIT-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 TTE +K +Q+ + S S + E TP ++Q Sbjct: 300 --------QTTEQP-------------VKMNQYQATSQDQSAV--ENTP------KIQ-- 328 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 I+ Y ++ D+ W++KL T + TD++D + + I+ + L+ + Sbjct: 329 ----IDRTKYETLLTQADLTHWIEKLNTAKLIAVDTETDSLDYISANLVGISFA-LENGE 383 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 T ++ ++D + T + ST L+ +K EN + KIG NIK+D+ + R Sbjct: 384 ATYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434 Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 +GI ++G E D ML+SY L+S GR H++ +A+++L + + + KS + ++I Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ ID Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L S EI+ L +LE+ Y L+G+ FNL+S KQL +ILF KL P KT G T Sbjct: 553 DALFIQSNEIATRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPST 612 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE+++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T TGR Sbjct: 613 NEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH++ L F Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A Y+ Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYM 791 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+P + +++ + + GYVET+FGRR++ +INS + R ER AINAP+ Sbjct: 792 DLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI + + + H +M++Q+HDELVFEV E++ + I ME A Sbjct: 852 QGTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA 910 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + V NW E Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928 >gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3] gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3] Length = 932 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 363/983 (36%), Positives = 543/983 (55%), Gaps = 70/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P D +P NA+ G NML +++ + IA V Sbjct: 6 DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A K G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LASQASKAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G++E + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLIDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A +S +L ++ DV + E L+ N LI L F +N + Sbjct: 241 DNAEMSYQLATIKLDVELEETPESLVKTQPNTDELIKLYGQLVFKSWLNEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +E + E G A + TS S++ TS + Sbjct: 292 -LEGGTGVVEADEKSGAA--------RSSGTSATSTVEMNTSAVT--------------- 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I++ + W++KL+ +F TD++D + + ++ +T ++ Sbjct: 328 -----IDRSKYETILDEETFNAWLEKLKAAEVFAFDTETDSLDYMVANLVGLSFAT-EEG 381 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L LK E++ K+G N+KYD VL Sbjct: 382 VAAYVPVAHDYLDAPQQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDMSVLA 432 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ ++I K + ++I Sbjct: 433 RYGIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + +A E+++V L+L L + EKL +YE ++ P+I V+S++E TG+ +D Sbjct: 493 ELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKAIYEEIEVPLIPVMSRIERTGVFVDD 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 LL S EI+ L LE+ Y+++ ++FN++SPKQL ILF K+ P KT +G T Sbjct: 553 MLLGAQSQEIAVRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGSPST 612 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K I+E+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 613 NEEVLQELAL-DYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGR 671 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AF++ K+++ DYSQIELRI+AH++ L + F+ Sbjct: 672 LSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQ 731 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH AAEI GVNIE V+ + RR AK +NF +IYG+S F LA QL IPR EA Y+ Sbjct: 732 QGKDIHAATAAEIIGVNIEDVTSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYM 791 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ +Y+E T++ + G+VETI+GRR+H EI S R ERAAINAP+ Sbjct: 792 DTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPM 851 Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + ++ + K+L+Q+HDELVFEV E + + ME A Sbjct: 852 QGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVEESSLAEIESKVQELMESA 911 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL +NW + Sbjct: 912 A----ELEVPLVAEAGHGDNWDQ 930 >gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE] gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE] Length = 930 Score = 607 bits (1565), Expect = e-171, Method: Compositional matrix adjust. Identities = 368/982 (37%), Positives = 557/982 (56%), Gaps = 72/982 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + +H AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQP----THIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + + L+L + +LI + EF + +N V D Sbjct: 242 NADLSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVINGADSIT-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 TTE +K +Q+ + S S + E TP ++Q Sbjct: 300 --------QTTEQP-------------VKMNQYQATSQDQSAV--ENTP------KIQ-- 328 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 I+ Y ++ D+ W++KL T + TD++D + + I+ + L+ + Sbjct: 329 ----IDRTKYETLLTQADLTHWIEKLNTAKLIAVDTETDSLDYISANLVGISFA-LENGE 383 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 T ++ ++D + T + ST L+ +K EN + KIG NIK+D+ + R Sbjct: 384 ATYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434 Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 +GI ++G E D ML+SY L+S GR H++ +A+++L + + + KS + ++I Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ ID Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L S EI+ L +LE+ Y L+G+ FNL+S KQL +ILF KL P KT G T Sbjct: 553 DALFIQSNEIATRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPST 612 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE+++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T TGR Sbjct: 613 NEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH++ L F Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A Y+ Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRLDAQKYM 791 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+P + +++ + + GYVET+FGRR++ +INS + R ER AINAP+ Sbjct: 792 DLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI + + + H +M++Q+HDELVFEV E++ + I ME A Sbjct: 852 QGTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA 910 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + V NW E Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928 >gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH] gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH] Length = 930 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 368/982 (37%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + +H AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPSLTNAA-GEPTGAMYGVLNMLKNLISQVQ----PTHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + + L+L + +LI + EF + +N V D Sbjct: 242 NADLSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVINGADSIT-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 TTE +K +Q+ + S S + E TP ++Q Sbjct: 300 --------QTTEQP-------------VKINQYQATSQDQSAV--ENTP------KIQ-- 328 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 I+ Y ++ D+ W++KL T + TD++D + + I+ + L+ + Sbjct: 329 ----IDRTKYETLLTQADLTHWIEKLNTAKLIAVDTETDSLDYISANLVGISFA-LENGE 383 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 ++ ++D + T + ST L+ +K EN + KIG NIK+D+ + R Sbjct: 384 AAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434 Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 +GI ++G E D ML+SY L+S GR H++ +A+++L + + I KS + ++I Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESIAGKGKSQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ ID Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L S EI+ L +LE+ Y L+G+ FNL+S KQL +ILF KL P KT G T Sbjct: 553 DALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPST 612 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T TGR Sbjct: 613 NEEVLEEL-AYSHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH++ L F Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A Y+ Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYM 791 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+P + +++ + + GYVET+FGRR++ +INS + R ER AINAP+ Sbjct: 792 DLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI + + + H +M++Q+HDELVFEV E++ + I ME A Sbjct: 852 QGTAADIIKRAMIKLDEVIR-HDPNIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA 910 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + V NW E Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928 >gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341] gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341] Length = 938 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 361/985 (36%), Positives = 554/985 (56%), Gaps = 68/985 (6%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NAI G NM+ +++ + IA V Sbjct: 6 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMVRSMMRQFASDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E+Y YKANRP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 61 IFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVLDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L ++ N +I K + + E Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLNDLYANLDKIAALGFRGSKTMAQKLEENR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + + L+ + + L++ L F + + Sbjct: 241 DNATLSYQLATIKCDVELAESPQTLLKQTPDRDALMALYGKLAFKAWLTEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 LD T +A + + + ++ S+ + I + Q Sbjct: 292 ------LDGGTGV---VAADEQAKASSMTSSNSASNAVSHAAVIPASPAAQ--------- 333 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I+N +D W++KL+ +F TD++D + + ++ + + Sbjct: 334 -----IDRSQYQTILNEQDFNLWLEKLQQADLFAFDTETDSLDYMVANLVGVSFAVAEG- 387 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E +I ++ H D+ + +++ LK E+E+ K+G N+KYD V+ Sbjct: 388 -------EAAYIPVA-HDYLDAP-QQLDRAWVIAQLKPLLEDENKAKVGQNLKYDASVIA 438 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYG+ +RG D ML SYV +S HD+ S+A ++L ++ ++I K+ + ++I Sbjct: 439 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 498 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590 + ++A E+++V L+L + P ++E KL VY ++ P++ V+S++E TG+ I Sbjct: 499 DLQEAAQYAAEDADVTLRLHQRISP--LIEQDSKLEQVYREIEMPLVPVLSRIERTGVMI 556 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D LL S EI+ L LE+ Y+L+G+ FNLSSPKQL ILF ++K P KT +G Sbjct: 557 DDMLLSAQSQEIALRLDELEKKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 616 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ K ++E+R L+K+KSTY D LP IN T RVHT Y A T T Sbjct: 617 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTAT 675 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP++ + G++IR+AF++P K+++ DYSQIELRI+AH++ L Sbjct: 676 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 735 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F DIH AAEI GV IE+VS + RR AK +NF +IYG+S F LA QL IPR EA + Sbjct: 736 FREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 795 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ +YF R+PG+ +Y+E T++ + GYVETIFGRR+H EI S R ERAAINA Sbjct: 796 YMDKYFERYPGVMQYMEDTRSRAAEQGYVETIFGRRLHLPEITSRNGMRRKAAERAAINA 855 Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 P+QG+AADI ++AM+ V + ++ + K+L+Q+HDELVFEV E ++ + ME Sbjct: 856 PMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIEIKVQELME 915 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL + +NW + Sbjct: 916 SAA----ELAVPLVADAGHGDNWDQ 936 >gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 928 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 362/982 (36%), Positives = 556/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS KL ++TDV + + E L ++ L+ K EF + V + A Sbjct: 241 EVAYLSYKLATIKTDVELELTCEQLEVQQPIAHELLGLFKEYEFKRWTADVESGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P T ++T I +++P +L Sbjct: 301 GAKP----------------TAKPQETVI----------------IDESPCEL------- 321 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + ++ ++Y I++ ++ W++KL+ +F TD++D + + ++ + ++ Sbjct: 322 --KAALSYENYVTILDESTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+ + L LK E++ K+G N+KYD+ VL Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDDKVRKVGQNLKYDRGVLQ 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++ +WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV + ++ S+ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKGDLDAVSKRI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VPL V + NW + Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926 >gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11] gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11] Length = 932 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 362/983 (36%), Positives = 550/983 (55%), Gaps = 70/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N LVDGSS+++RA++A P + DG P A+ G NML LL+ + IA V Sbjct: 6 DNPFILVDGSSYLFRAYHAAPNFTNG-DGQPTGAVYGVINMLRSLLKQFGTDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFRN++YP+YKANRP +P+ L Q+ + +A G+P + I G EADD+I T Sbjct: 61 IFDAKGKTFRNDMYPEYKANRPPMPDDLRCQIEPLHKLIKAMGLPLVSIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A K G V I + DKD+ QLV L +T+ +D E V++K+GI PE ++ Sbjct: 121 LASQASKAGIPVLISTGDKDMAQLVDENVTLINTMTNVIMDPEGVVEKFGIGPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L+ + + I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTAKALLQGIGGLDALYEHLDDIAPLGFRGSKTMAKKLIDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++ DV + E + ++ N LI + F + + + D Sbjct: 241 EGAYLSYELATIKLDVELDKTPEEFVKQEPNVDELIQMFGQMNFKRWLTEMLDGSDGKIV 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + E ++T+ + A E E+ + S++ + Sbjct: 301 SHETSSNSVSTSSKQDDA-EEELIVAAQVDRSKYET------------------------ 335 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ + W+ KL A+F TD++D + I ++ + +++ Sbjct: 336 -------------ILTKEAFSVWLDKLNNADVAAFDTETDSLDYMVANLIGLSFA-VEEG 381 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D +D +L LK + E+++ K+G N+KYD VL Sbjct: 382 EAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPYLEDDNKAKVGQNLKYDASVLA 432 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RY I M+G + D ML SYV +S H++ S+A ++L + + +EI K + ++I Sbjct: 433 RYDIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFEEIAGKGKKQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E++++ L+L +L KL EKL V+ ++ P++ V+S+ME G+ ID Sbjct: 493 ALEQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVSVLSRMERKGVYIDD 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 LL S EI + L LE+ ++++GE+FN++SPKQL ILF K++ P KT +G T Sbjct: 553 MLLSAQSLEIGQRLDELEKAAFEVAGEEFNMNSPKQLQTILFEKMELPVIKKTPSGAAST 612 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 613 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 671 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH+++ L F Sbjct: 672 LSSTDPNLQNIPIRNEEGRRIRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFS 731 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH AAE+ GV+IE+V+ + RR AK INF +IYG+S F LA Q+ IPR EA DY+ Sbjct: 732 AGKDIHAATAAEVKGVSIEEVTSEDRRRAKAINFGLIYGMSAFGLAKQIGIPRGEAQDYM 791 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ +Y+E+T+ + GYVET++GRR+H EIN+ R ERAAINAP+ Sbjct: 792 NVYFERYPGVMQYMEETRLLATEQGYVETLYGRRLHLPEINARNGMRRKAAERAAINAPM 851 Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AMI V + +E + K +L+Q+HDELVFEV E+ + + + ME+A Sbjct: 852 QGTAADIIKKAMILVDEWVETEGKDRVNLLMQVHDELVFEVKEDALDEVTTKVRELMEQA 911 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPL NNW E Sbjct: 912 ----VQLDVPLVAEAGFGNNWDE 930 >gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] Length = 931 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 359/984 (36%), Positives = 546/984 (55%), Gaps = 73/984 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P D +P NA+ G NML +++ + IA V Sbjct: 6 DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A + G V I + DKD+ QLV L +T+ +D E V++K+GIPPE ++ Sbjct: 121 LAYQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G ++ + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGIDKLYENLDDIAGLGFRGSKTMAKKLVDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++ DV + + L+ + N L+ L F +N + Sbjct: 241 ENAELSYQLATIKLDVELDETPDSLVKAEPNKDELVKLYGQLVFKSWLNEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +D T + S S + Q S +++ P Sbjct: 292 ----------------------LDGGTGVVESDEKSGA-QRSSVSAASAPD-------MD 321 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 S I+ Y I++ W++KL+ +F TD++D + + ++ +T Q+ Sbjct: 322 TSAVTIDRSQYETILDQATFNAWLEKLKAADVFAFDTETDSLDYMVANLVGLSFAT--QE 379 Query: 418 DDTSF-KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 ++ V ++D +D +L LK E++ K+G N+KYD VL Sbjct: 380 GVAAYVPVAHDYLDAPQQLDRDW---------VLEQLKPILEDDTQAKVGQNLKYDASVL 430 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 RY I ++G + D ML SYV +S HD+ S+A ++L ++ ++I K + ++ Sbjct: 431 ARYDIELKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQ 490 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591 I + +A E+++V L+L L + EKL +Y+ ++ P++ V+S++E TG+ ID Sbjct: 491 IELDEASPYAAEDADVTLRLHNRLMENIDQDEKLKAIYQDIEVPLVPVLSRIERTGVLID 550 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L S EI++ L LE+ Y+++ ++FN++SPKQL +LF K+ P KT +G Sbjct: 551 DMKLAAQSQEIAQRLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPS 610 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TG Sbjct: 611 TNEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINSETGRVHTSYHQAVTATG 669 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L F Sbjct: 670 RLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKIMAVDYSQIELRIMAHLSGDQALLDAF 729 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DIH AAEI G I++VS + RR AK +NF +IYG+S F LA QL IPR EA DY Sbjct: 730 QQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDY 789 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + +YF R+PG+ +Y+E T++ + GYVETIFGRR+H EI S R ERAAINAP Sbjct: 790 MNKYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAP 849 Query: 892 IQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 +QG+AADI ++AM+ V + ++ + K+L+Q+HDELVFEV E +T + ME Sbjct: 850 MQGTAADIIKKAMLLVDQWIQAEGDGRVKLLMQVHDELVFEVQESALTEIESKVQELMES 909 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL +NW++ Sbjct: 910 AA----ELAVPLVAEAGHGDNWEQ 929 >gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568] gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568] Length = 934 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 373/984 (37%), Positives = 552/984 (56%), Gaps = 70/984 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLLQYQP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLLVTPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G AV I + DKD+ QLV+ L +T+ + + V K+GIPPE ++ Sbjct: 121 LALEAEKAGHAVLISTGDKDMAQLVTSNVTLINTMNNTILGPQEVCDKYGIPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILINASRIKQKKRRENILEY 236 AL GD+ DNIPG+PG+G KTA LLQ Y NL++I + R K + + Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQGLLQGLGGLDMLYANLDSIATLSFR-GAKTMAAKLEQN 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E A LS KL ++TDV + I L + + L K EF + + Sbjct: 240 KEMAYLSYKLATIKTDVELDITCADLQVSPLDVDTLQQLFKQYEFKRWL----------- 288 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 A++E V KG ++ T +S +T K +E T Sbjct: 289 ADVEAGVW---LEGKKGAGVKA------TSAAKSSASAVAETGKAQAEAT---------- 329 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 ++ + Y I++ +W++KL+ +F TD +D + I ++ + + Sbjct: 330 ------LSQEGYVTILDEDTFTEWLEKLKKAEVFAFDTETDGLDTLTANLIGLSFA-IAP 382 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + V ++D + +L+ LK E+E LK+G N+K+D +L Sbjct: 383 GEAAYLPVAHDYLDAPTQLDR---------AHVLATLKPLLEDEKALKVGQNLKFDMSLL 433 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 RY I++RG D ML SYVLDS HD+ S++ ++L + T +EI K + ++ Sbjct: 434 ARYDITLRGIAFDTMLESYVLDSVGGRHDMDSLSDRYLGHKTVTFEEIAGKGKKQLTFNQ 493 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQID 591 I+ Q +A E+++V LQL L + P+L +LL V+ +++ P++ V+S +E TG+ ID Sbjct: 494 IALEQAAPYAAEDADVTLQLHLAMWPQLKESAELLTVFNQIEMPLLPVLSHIERTGVLID 553 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 Q +L S E++K L LE ++L+ E FNL+S KQL IL+ K K P KT G Sbjct: 554 QSILATHSIELTKRLAELEIQAHELAEEPFNLASTKQLQAILYEKQKLPILKKTPGGAPS 613 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L ++ D P+ K ILE+R L+K+K+TY D LP IN + RVHT Y A T TG Sbjct: 614 TNEEVLAELAL-DYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSYHQAVTATG 672 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP++ D G++IR+AFI+P ++++ADYSQIELRI+AH+++ L + F Sbjct: 673 RLSSSDPNLQNIPVRNDEGRRIRQAFIAPEGYRIVAADYSQIELRIMAHLSQDEGLLKAF 732 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIHR AAE+FG+ ++KV+ + RR AK INF +IYG+S F LA QL IPR EA Y Sbjct: 733 AAGEDIHRATAAEVFGLPLDKVTNEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRY 792 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF R+PG+ EY+E+T+ GYV T+ GRR++ +++S R ERAAINAP Sbjct: 793 MDLYFERYPGVLEYMERTRQQAASQGYVSTLDGRRLYLPDVSSSNGMRRKAAERAAINAP 852 Query: 892 IQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 +QG+AADI +RAMI V L+ K +M++Q+HDELVFEV E + ++Q I ME Sbjct: 853 MQGTAADIIKRAMIEVDAWLQAQEKPLVRMIMQVHDELVFEVHESVLEESNQRIRELMEN 912 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 + + L VPLKV++ V NW E Sbjct: 913 S----MALAVPLKVDVGVGANWDE 932 >gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG] gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG] Length = 930 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 365/982 (37%), Positives = 557/982 (56%), Gaps = 72/982 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + +H AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQP----THIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKP 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + + L+L + +LI + EF + +N V D Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 TTE +K +Q+ + S S + E P ++Q Sbjct: 300 --------QTTEQP-------------VKMNQYQATSQDQSAV--ENAP------KIQ-- 328 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 I+ Y ++ D+ +W++KL + + TD++D + + I+ + L+ + Sbjct: 329 ----IDRTKYETLLTQADLTRWIEKLNSAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 ++ ++D + T + ST L+ +K EN + KIG NIK+D+ + R Sbjct: 384 AAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434 Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 +GI ++G E D ML+SY L+S GR H++ +A+++L + + + KS + ++I Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ ID Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L S EI+ L +LE+ Y L+G+ FNL+S KQL +ILF KL P KT G T Sbjct: 553 DALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPST 612 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE+++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T TGR Sbjct: 613 NEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH++ L F Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIARKGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A Y+ Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYM 791 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+P + +++ + + GYVET+FGRR++ +INS + R ER AINAP+ Sbjct: 792 NLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI + + + H +M++Q+HDELVFEV E++ + I ME A Sbjct: 852 QGTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA 910 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + V NW E Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928 >gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688] gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688] Length = 918 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 366/978 (37%), Positives = 541/978 (55%), Gaps = 77/978 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L K + P AI G NML +L K+ A + A +FD Sbjct: 4 LLLVDGSSYLYRAFHAMPDLRNKQNE-PTGAIQGVLNMLRRL----HKDYPADYSACVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++IYP+YKANR +P+ L Q+ + A QA G P I G EADD+I Sbjct: 59 AKGKTFRDDIYPEYKANRASMPDDLRLQIEPLHTAIQAMGWPLIVEDGVEADDVIGALAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMV 180 AE+EG V I + DKD+ QLV+ + +T+++ E +D V K+G+PP MV Sbjct: 119 QAEREGMRVIISTGDKDISQLVNEHITVVNTMRDAFRKTDEVLDPAGVEAKFGVPPSLMV 178 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L GDS DN+PG+ +G KTA L +YG+LENI+ NA +I EN+ + Sbjct: 179 DYLILIGDSSDNVPGVEKVGPKTAVKWLTQYGSLENIVANADQIT-GVVGENLRKALPWL 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +R+L+ +R DV I LE L + +LI EF L Sbjct: 238 PTARELITIRCDVGIQESLEDLAPRPQDREKLIELFDRFEFKTL---------------- 281 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 E+D + +++ Q + +++ LF + Sbjct: 282 ----------------RRELDLAVPAAQAPLPAMAAQPAGTSAD-----LF-------AA 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 + + I++ +Q+W+ K+ + F T ++D +K + ++ S Sbjct: 314 AGVTTRQFETILDEASLQRWLDKISSAALVCFDTETTSLDPLTAKLVGMSFSIK------ 367 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 E ++ L+ H + + L+ +K EN K+G N+KYDK VL +G Sbjct: 368 --AGEAAYLPLT-HDYPGAPDQLPFAA-TLARIKPLLENPAIKKVGQNLKYDKHVLANHG 423 Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536 I + G D +L SYVL+S R+ H + +A + L + T +++ + +++ Sbjct: 424 IVLNGIAHDTLLQSYVLESHRT-HGMDDLAMRHLGVQTITYEQVAGKGAKQVSFSQVALE 482 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 Q E+A E+++V LQL L P++ + KL VY +++ P++D++ +E G+ ID D+L Sbjct: 483 QASEYAAEDADVTLQLHENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDML 542 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 + S EI + L++LE+ Y+L+G+ FNL SPKQL +ILF KL KT +G +T + Sbjct: 543 NRQSHEIGQKLMALEQQAYELAGQPFNLGSPKQLQEILFGKLGIKPLKKTPSGT-PSTDE 601 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 D+ Q D P+ K +LE+R L+K+KSTY D LP IN T RVHT YS A +TGRL+S Sbjct: 602 DVLQELALDYPLPKVLLEYRGLAKLKSTYTDKLPRMINPTTGRVHTSYSQAVAVTGRLSS 661 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP++T G++IR AF++P ++SADYSQIELRI+AH+++ L F Sbjct: 662 SDPNLQNIPVRTAEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQDDGLLTAFAAGE 721 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR AAEIFGV + VS + RR+AK INF +IYG+S F LA L I R A +YI+RY Sbjct: 722 DIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAFGLAQNLGIERQAAQNYIERY 781 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PG+ +Y++ T+ + GYVET FGRR+ EINSP R ERAAINAP+QG+ Sbjct: 782 FTRYPGVRDYMQNTRERAKAQGYVETFFGRRLWVPEINSPNGMRRAGAERAAINAPMQGT 841 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD+ + AMI+V LE KLATK+++Q+HDELV EVP+ E+ + + M+ Sbjct: 842 AADLIKLAMIAVQGWLESEKLATKLIMQVHDELVLEVPDNELALVKEKLPQLMQDVA--- 898 Query: 956 INLRVPLKVNIKVSNNWQ 973 L VPL + V +NW+ Sbjct: 899 -KLDVPLLAEVGVGSNWE 915 >gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae] Length = 936 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 369/987 (37%), Positives = 559/987 (56%), Gaps = 80/987 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN LVDGSS++YRA++A P L+ G P A+ G NML L+ + SH AV Sbjct: 12 ENPFILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PSHIAV 66 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK+ RP +P+ L Q+ + A G+P + + G EADD+I T Sbjct: 67 VFDAKGKTFRDELFEQYKSQRPPMPDDLREQIAPLHEMVAAMGLPLLVVAGVEADDVIGT 126 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A K+G V I + DKD+ QLV+ L +T+ + V K+G+PPE MV Sbjct: 127 LALQASKKGLPVLISTGDKDMAQLVTADITLINTMTNTLLGPAEVADKYGVPPELMVDFL 186 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G+L I + S I K E + ++ Sbjct: 187 ALMGDSSDNIPGVPGVGEKTALALLQGIGDLATIYQDLSAIAPLGFRGSKTLAEKMAQHK 246 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++T+V +T + L+++ + +L + EF + + + Sbjct: 247 DIAFLSYKLATIKTNVDLTTDYDGLVMQAPDIEKLHALFSRYEFKRWLTDL--------- 297 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +N G T KT Q S T +N+ L K Sbjct: 298 ------------QNGGW---------LTKKTGQ----SPTTVSVNNNDI-------SLAK 325 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ + Y I+ D+ QWV+KL++ +F TD++D + I + Sbjct: 326 EPVAALSTEHYQTILTKADLMQWVEKLQSAKCFAFDTETDSLDTLSAHLIGL-------- 377 Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 SF +E ++ L H D+ + L E+L+ +K +++ KIG N+K+D Sbjct: 378 ---SFAIEKGKGAYLPLG-HNYLDAPQQLPL-DEVLAAIKPILVDKNIQKIGQNLKFDYG 432 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDS--GRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528 V+ Y I ++ D ML SYVL+S G HD+ S+AQ+ L++ T +EI K+ + Sbjct: 433 VMANYDIELKNMAFDTMLESYVLNSVAGLGRHDMDSLAQRHLNHKTITFEEIAGKGKNQL 492 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587 ++I Q +A E+++V L L L P+L E KL ++++++ P++ V+++ME G Sbjct: 493 TFNQIPLEQASTYAAEDADVTLLLHQTLWPQLESEPKLKGIFQQIEMPLVPVLARMERVG 552 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + ID + L + S EI+ L+ +E+ Y ++ ++FNL+SPKQL ILF KL+ P KT + Sbjct: 553 VLIDANKLAKQSREIASRLMEIEKEAYAIAEQEFNLASPKQLQAILFEKLQLPVVKKTPS 612 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + LE++ + + K IL+ R LSK+KSTY D LP I+ +T+RVHT Y A Sbjct: 613 GAPSTNEEVLEEL-AFSHELPKIILQHRSLSKLKSTYTDKLPMMIHPKTKRVHTSYHQAV 671 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIP++T+ G++IR+AFI+ K+++ADYSQIELRI+AH+++ L Sbjct: 672 TATGRLSSRDPNLQNIPVRTEEGRRIRQAFIAREGYKIVAADYSQIELRIMAHLSQDKGL 731 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F DIHR AAE+FGV + V+ + RR AK INF +IYG+S F L+ QL I R + Sbjct: 732 LDAFAEGQDIHRATAAEVFGVLLTDVTNEQRRSAKAINFGLIYGMSAFGLSRQLGITRGQ 791 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A Y+ RYF R+PG+ Y+E+T+ + GYVET+ GRR++ +INS + R +ER A Sbjct: 792 AQHYMDRYFERYPGVLSYMERTRKQAAEQGYVETLAGRRLYLPDINSRNAMRRKASEREA 851 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AADI ++AMI++ K +E K ML+Q+HDELVFEV E + + Q I Sbjct: 852 INAPMQGTAADIIKKAMIALDKWIESVKPDLYMLMQVHDELVFEVKESAVDRSQQKIRQL 911 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME++ + L VPLKV++ + +NW E Sbjct: 912 MEQS----MQLTVPLKVDVGIGDNWDE 934 >gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] Length = 927 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 363/987 (36%), Positives = 542/987 (54%), Gaps = 83/987 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NA+ G NML ++++ + AV Sbjct: 6 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRHYASD----RMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I + G EADD+I T Sbjct: 61 IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIKAMGLPLICVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A EG V I + DKD+ QLV L +T+ +D E V++K+GIPPE ++ Sbjct: 121 LATQASAEGIPVLISTGDKDMAQLVDENITLINTMTNTVMDREGVVEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----------ASRIKQKKRRENI 233 AL GD +DNIPG+PG+G KTA LLQ G LE + N S+ KK EN Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLEQLYDNLDSIAALGFRGSKTMAKKLEEN- 239 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 + A LS +L ++ DV + + L + LI L F +N + D Sbjct: 240 ---KDDAMLSYQLATIKLDVKLDHDIPSLSKSAPDQDSLIKLYGQLVFKSWLNELLEGGD 296 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 T G A FS SD +S +++ Sbjct: 297 -------------GTIMADGAA---------------FSRGSDTSSDLDT---------- 318 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 S I+ Y I++ + W+ KL + +F TD++D + + ++ + Sbjct: 319 -----SAVKIDRSQYEIILDESAMAVWLNKLRSADVIAFDTETDSLDYMEANLVGVSFA- 372 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 +++ V ++D +D +L LK E+ K+G N+KYD Sbjct: 373 IEEGVAAYVPVAHDYMDAPKQLERDW---------VLEQLKPILEDGSRAKVGQNLKYDA 423 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 VL RYGI MRG + D ML SYV +S HD+ S+A ++L ++ +++ K + Sbjct: 424 SVLARYGIDMRGIKFDTMLASYVYNSVAGKHDMDSLALRFLQHSCISFEQVAGKGKKQLT 483 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I Q +A E+++V +L L+ L +KL +Y ++ P++ V+S++E TG+ Sbjct: 484 FNQIDLEQAAPYAAEDADVTFRLHQRLQKSLDASDKLASIYRDIEMPLVPVLSRIERTGV 543 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ID L S EI+ L +LE+ +D++G++FN++SPKQL ILF K+ P KT +G Sbjct: 544 LIDDMKLSAQSQEIALRLDALEQQAFDIAGQEFNMNSPKQLQAILFEKMGLPVVKKTPSG 603 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L+++ D P+ + ILE+R L+K+KSTY D LP IN T RVHT Y A T Sbjct: 604 TPSTNEEVLQELAL-DYPLPEKILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVT 662 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L Sbjct: 663 ATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKIMAIDYSQIELRIMAHLSGDRALL 722 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F+ DIH AAEI GV+I +V+ + RR AK +NF +IYG+S F LA QL IPR EA Sbjct: 723 EAFQQGKDIHAATAAEILGVDISQVTAEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEA 782 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ +Y+E T++ + GYVETIFGRR+H EI S R ERAAI Sbjct: 783 QQYMDTYFERYPGVMQYMEDTRSIAAEQGYVETIFGRRLHLPEIQSRNGMRRKAAERAAI 842 Query: 889 NAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI ++AM+ V ++ + + K+L+Q+HDELVFEV E + I + Sbjct: 843 NAPMQGTAADIIKKAMLLVDDWIQTEGQGRVKLLMQVHDELVFEVEETSLPEIESKIRNL 902 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME+A L+VPL NW + Sbjct: 903 MEQAA----QLKVPLVAEAGHGENWDQ 925 >gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116] gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116] Length = 930 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 365/983 (37%), Positives = 546/983 (55%), Gaps = 72/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRAF+A P + + +P NA+ G NML +++ + IA V Sbjct: 6 ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A ++G V I + DKD+ QLV L +T+ +D E V++K+GIPPE ++ Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + E L+ + + LI L F +N + Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPSTDELIKLYGQLTFKSWLNELLE------G 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 V D +T +G + ++ D DT Sbjct: 295 GTGVVEADESTGAARGGSAASKADMDT--------------------------------- 321 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 S I+ Y I++ W+ KL+ +F TD++D + + ++ +T D+ Sbjct: 322 -SAVKIDRSQYETILDEASFNAWLDKLKASELFAFDTETDSLDYMVANLVGLSFAT-DEG 379 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L+ LK E+E K+G N+KYD VL Sbjct: 380 IAAYVPVAHDYLDAPQQLDRDW---------VLAQLKPILEDEAQAKVGQNLKYDASVLA 430 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ ++I K+ + ++I Sbjct: 431 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 490 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + +A E+++V L+L L + EKL VYE ++ P++ V+S++E TG+ ID Sbjct: 491 DLDEASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLSRIERTGVLIDD 550 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L S EI+ L LE+ Y+++ ++FN++SPKQL +LF K+ P KT +G T Sbjct: 551 MKLSAQSVEIAARLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVINKTPSGTPST 610 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 611 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 669 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L F Sbjct: 670 LSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFR 729 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH AAEI GV+IE VS + RR AK +NF +IYG+S F LA QL IPR EA Y+ Sbjct: 730 DGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 789 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 +YF R+PG+ +Y+E T++ + G+VETIFGRR+H EI S R ERAAINAP+ Sbjct: 790 DKYFERYPGVMQYMEDTRSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPM 849 Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + + E+ K+L+Q+HDELVFEV E ++ + + ME A Sbjct: 850 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQNLMESA 909 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L+VPL +NW + Sbjct: 910 A----ELKVPLVAEAGHGDNWDQ 928 >gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3] gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3] Length = 924 Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust. Identities = 348/979 (35%), Positives = 544/979 (55%), Gaps = 67/979 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P LS G P A+ G NML L+ ++ A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLSNAQ-GEPTGALFGVVNMLRSTLKER-----PAYVAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123 D P TFR+++Y YKANRP +P+ L Q+ P+ R+ +A GI + I G EADD+I T Sbjct: 56 VDAPGKTFRDDLYEQYKANRPPMPDELRSQVEPMCRI-VEALGISILRIPGVEADDVIGT 114 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCL 182 + VTI + DKD QLV P L +T+ ++D + V++K+G+ ++++ L Sbjct: 115 LALQGVAQDLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIIDL 174 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD++DN+PG+ G KTAA L EY +L+ ++ A +K K EN+ E L Sbjct: 175 LALMGDTVDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKGKIG-ENLRAALERLPL 233 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 +R+LV +RTDV + L L + + P L FT+ + + A E Sbjct: 234 NRELVTIRTDVELEASPTTLALREQDVPELTELYARYGFTQALKELGAPLPAPTAASE-- 291 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 T +G A + F+ S + + L Sbjct: 292 ----ATPSLRGTA-------------AGFARGSAEAPAAGT--------------LDPAL 320 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 Y ++ + +Q WV++L+ SF TD +DA ++ + I+++ K Sbjct: 321 AAPGEYETVLTAEQLQAWVERLQQADLISFDTETDALDAMRARLVGISLAVEPGK----- 375 Query: 423 KVETIFIDLSVHTSQDSTGK--NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 +I + D G +++L L+ ++ K+G + KYD VL R+G Sbjct: 376 ---AAYIPVG----HDYPGAPPQLPMQQVLDALRPVLQDPAKKKLGQHGKYDLHVLRRHG 428 Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536 + ++G+ +D ML S+VL+S + HD+ S+A ++L Y +++ IP ++ Sbjct: 429 VEVQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYNTIKFEDVAGKGAKQIPFSQVGID 488 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + +A E++++ L+L L+P+L+ E L VY ++ P++ V++ +E G++ID L Sbjct: 489 EASRYAAEDADITLRLHRALQPQLLAEPALDSVYRDIEMPLVPVLTSIEANGVRIDTVEL 548 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 ++ S ++S +L+ ++ +L+G FNL SPKQL +LF +LK P+ KT GQ T + Sbjct: 549 RRQSQDLSSRMLAAQQKATELAGRSFNLDSPKQLQAVLFDELKLPAVVKTPKGQPSTNEE 608 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE I + + + ILE+R L+K++STY D LP +N T RVHT Y + TGRL+S Sbjct: 609 ALEAI-ADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGAATGRLSS 667 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIPI+T+ G++IRRAFI+P +L++ADYSQIELRI+AH+++ L FE Sbjct: 668 SDPNLQNIPIRTEDGRRIRRAFIAPEGFQLLAADYSQIELRIMAHLSEDPGLVGAFEQGA 727 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+HR AAE+FG +E+V+P RR AK INF ++YG+S F LA L I R +A DY+ Y Sbjct: 728 DVHRATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQDYVALY 787 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PG+ +++E+ + R GYVET+FGRR++ ++I++ +R ERAAINAP+QG+ Sbjct: 788 FSRYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGT 847 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI +RAM+ V + L D +M+LQ+HDELVFE + +V M +A Sbjct: 848 AADIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEELRLQVVERMSQAA--- 904 Query: 956 INLRVPLKVNIKVSNNWQE 974 LRVPL V+ + NNW E Sbjct: 905 -KLRVPLVVDTGIGNNWDE 922 >gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39] gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39] Length = 937 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 373/987 (37%), Positives = 563/987 (57%), Gaps = 74/987 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LFL+DG + IYRA +A R G+ +A+ GF N L ++L+ + SH AV+F Sbjct: 4 LFLLDGMALIYRAHFALSKNPRFTSTGINTSAVMGFANTLMEVLKKEK----PSHIAVVF 59 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A T R+ + YKA+R +PE L LP V + F IP I G+EADDII T Sbjct: 60 DTDAPTERHVDFEAYKAHRQAMPEDLSAALPYVVKLIEGFNIPVITKDGYEADDIIGTLA 119 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE-KMV 180 E++GF V ++ DKD QLVS +Y + E + + V+ KW I +++ Sbjct: 120 KEGERQGFQVYCMTPDKDFAQLVSENIFIYKPARMGNEMEILGVPEVLAKWDIENVLQVI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + L GD++DNIPGIPGIG KTA L+++YG++ENI+ NA +K K+REN+ YA+ Sbjct: 180 DILGLWGDAVDNIPGIPGIGEKTAKSLIRQYGSMENIIANAHELK-GKQRENVEMYAQQG 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAANI 299 +S+KL + DVP+T + L+LE + L LEF + RV + + A + Sbjct: 239 LVSKKLATIILDVPVTFDPDALVLEAPSRELLEPLFAELEFRTIGKRVFGEDFSVNEAKV 298 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ----TPQKLFLERL 355 NT+ Q + T+ ++E P +LF E Sbjct: 299 -------NTS-------------------GQMDMFGNVTAGTDTESKVFVAPPELFAE-- 330 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQ-WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 + ++ N + ++++T D+++ +++L S SF T DA ++ + ++ S Sbjct: 331 AENAKTIENTEHDYRLIDTADLRKALIEELLQQESISFDTETTGTDANLAELVGLSFSV- 389 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 K + +I L + TL + IL K ENE+ KIG NIKYD L Sbjct: 390 --KPGAGY-----YIPLP--------PERTLAQPILDEFKVVLENENIAKIGQNIKYDML 434 Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK----SRKSSIP 529 +L YG+ ++G D ML Y++D + H++ +++ +L Y+ I K K+ Sbjct: 435 ILKWYGLEIKGKLFDTMLAHYLIDPD-TRHNMDVLSENYLCYSPISITKLIGPKGKNQGN 493 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 + + +QV ++A E+++V LQL + RP L + ++ P+I V++ +E G++ Sbjct: 494 MRDVPVAQVVDYAAEDADVTLQLANVFRPMLKDLNAEQLATEVENPLIYVLADIESEGVR 553 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648 ID + L S E+ ++ E+N+YD G +FNL+SPKQLG++LF +L+ P KTKTG Sbjct: 554 IDIETLVNYSKELETDIRKFEKNVYDKCGVEFNLASPKQLGEVLFDRLQLDPKAKKTKTG 613 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q++T +D+ + I+++IL++RQL K+KSTY D+LP +N +T RVHT Y+ A Sbjct: 614 QYQT-GEDVLLALASKSDIVQDILDFRQLQKLKSTYVDALPLLVNPKTGRVHTSYNQAVA 672 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPL 767 TGRL+S PNLQNIPI+T+ G+++RRAFI L+SADYSQIELRI+A I+K + Sbjct: 673 ATGRLSSNNPNLQNIPIRTERGREVRRAFIPRDENHVLLSADYSQIELRIIADISKEENM 732 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 Q F LDIH AA+++GV IE+V+ RR+AK +NF IIYG S F L+ L IPR E Sbjct: 733 LQAFNQGLDIHTATAAKVYGVAIEEVTSTQRRNAKAVNFGIIYGQSAFGLSQSLGIPRKE 792 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 AA+ I +YF ++PGI +Y+ T NF R+NG+VETI GRR + +INS ++R ER A Sbjct: 793 AAEIIDQYFTQYPGIKKYMSDTMNFARENGFVETILGRRRYLRDINSANQTVRGFAERNA 852 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQGSAAD+ + AMI++HK + + +KM +Q+HDELVF+V + E+ +II H Sbjct: 853 INAPIQGSAADMIKVAMINIHKDMNARGMKSKMTMQVHDELVFDVLKTEVDEMKEIISHR 912 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ A I VP+++ I NNW E Sbjct: 913 MKTA----IATTVPIEIEIGQGNNWLE 935 >gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4] gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4] Length = 918 Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust. Identities = 365/978 (37%), Positives = 542/978 (55%), Gaps = 77/978 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L K + P AI G NML +L K+ A + A +FD Sbjct: 4 LLLVDGSSYLYRAFHAMPDLRNKQNE-PTGAIQGVLNMLRRL----HKDYPADYSACVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++IYP+YKANR +P+ L Q+ + A QA G P I G EADD+I Sbjct: 59 AKGKTFRDDIYPEYKANRASMPDDLRLQIEPLHTAIQAMGWPLIVEDGVEADDVIGALAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMV 180 AE+EG V I + DKD+ QLV+ + +T+++ E +D V K+G+PP MV Sbjct: 119 QAEREGMRVIISTGDKDISQLVNEHITVVNTMRDAFRKTDEVLDPAGVEAKFGVPPSLMV 178 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L GDS DN+PG+ +G KTA L +YG+LENI+ +A +I EN+ + Sbjct: 179 DYLILIGDSSDNVPGVEKVGPKTAVKWLTQYGSLENIIAHADQIT-GVVGENLRKALPWL 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +R+L+ +R DV I LE L + +LI EF L Sbjct: 238 PTARELITIRCDVGIQESLEDLAPRPQDREKLIELFDRFEFKTL---------------- 281 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 E+D + +++ Q + +++ LF + Sbjct: 282 ----------------RRELDLAVPAAQAPLPAMAAQPAGTSAD-----LF-------AA 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 + + I++ +Q+W+ K+ + F T ++D +K + ++ S Sbjct: 314 AGVTTRQFETILDEASLQRWLDKISSAALVCFDTETTSLDPLTAKLVGMSFSIK------ 367 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 E ++ L+ H + + L+ +K EN K+G N+KYDK VL +G Sbjct: 368 --AGEAAYLPLT-HDYPGAPDQLPFAA-TLARIKPLLENPAIKKVGQNLKYDKHVLANHG 423 Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536 I++ G D +L SYVL+S R+ H + +A + L + T +++ + +++ Sbjct: 424 IALNGIAHDTLLQSYVLESHRT-HGMDDLAMRHLGVQTITYEQVAGKGAKQVSFSQVALE 482 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 Q E+A E+++V LQL L P++ + KL VY +++ P++D++ +E G+ ID D+L Sbjct: 483 QASEYAAEDADVTLQLHENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDML 542 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 + S EI + L++LE+ Y+L+G+ FNL SPKQL +ILF KL KT +G +T + Sbjct: 543 NRQSHEIGQKLMALEQQAYELAGQPFNLGSPKQLQEILFGKLGIKPLKKTPSGT-PSTDE 601 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 D+ Q D P+ K +LE+R L+K+KSTY D LP IN T RVHT YS A +TGRL+S Sbjct: 602 DVLQELALDYPLPKVLLEYRGLAKLKSTYTDKLPRMINPTTGRVHTSYSQAVAVTGRLSS 661 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP++T G++IR AF++P ++SADYSQIELRI+AH+++ L F Sbjct: 662 SDPNLQNIPVRTAEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQDDGLLTAFAAGE 721 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR AAEIFGV + VS + RR+AK INF +IYG+S F LA L I R A +YI+RY Sbjct: 722 DIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAFGLAQNLGIERQAAQNYIERY 781 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PG+ +Y++ T+ + GYVET FGRR+ EINSP R ERAAINAP+QG+ Sbjct: 782 FTRYPGVRDYMQNTRERAKAQGYVETFFGRRLWVPEINSPNGMRRAGAERAAINAPMQGT 841 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD+ + AMI+V LE KLATK+++Q+HDELV EVP+ E+ + + M+ Sbjct: 842 AADLIKLAMIAVQGWLESEKLATKLIMQVHDELVLEVPDNELALVKEKLPQLMQDVA--- 898 Query: 956 INLRVPLKVNIKVSNNWQ 973 L VPL + V +NW+ Sbjct: 899 -KLDVPLLAEVGVGSNWE 915 >gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA] gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA] Length = 935 Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust. Identities = 367/985 (37%), Positives = 558/985 (56%), Gaps = 73/985 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQP----SHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEHYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDNNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + + L+L + +LI + EF + +N V D Sbjct: 242 NAALSYTLATIKTDVELNVTTDELLLGESQKDQLIEYFARYEFKRWLNEVMNGSDSIT-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS---EQTPQKLFLERL 355 TTE +K +Q+ + S S + + E TP ++ Sbjct: 300 --------QTTEQP-------------VKINQYQATSPAQSSVGNSAVENTP------KI 332 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 Q I+ Y ++ D+ +W++KL T + TD++D + + I+ + L+ Sbjct: 333 Q------IDRTKYETLLTQADLTRWIEKLNTAKLIAVDTETDSLDYMSANLVGISFA-LE 385 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + ++ ++D + T + ST L+ +K EN + KIG NIK+D+ + Sbjct: 386 NGEAAYLPLQLDYLD-APKTLEKSTA--------LAAIKLILENPNIHKIGQNIKFDESI 436 Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 R+GI ++G E D ML+SY L+S GR H++ +A+++L + + + KS + Sbjct: 437 FARHGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTF 494 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589 ++I Q E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ Sbjct: 495 NQIPLQQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVL 554 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID D L S EI+ L +LE+ Y L+G+ FNL+S KQL +ILF KL P KT G Sbjct: 555 IDSDALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGA 614 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + LE+++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T Sbjct: 615 PSTNEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTA 673 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH++ L Sbjct: 674 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLIN 733 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIHR AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A Sbjct: 734 AFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQ 793 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 Y+ YF R+P + +++ + + GYVET+FGRR++ +INS + R ER AIN Sbjct: 794 KYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAIN 853 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AADI +RAMI + + + H +M++Q+HDELVFEV E++ + I +E Sbjct: 854 APMQGTAADIIKRAMIKLDEVIR-HDPNIEMIMQVHDELVFEVRSEKVAFFREQIKQHIE 912 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V + V NW E Sbjct: 913 AAA----ELVVPLIVEVGVGQNWDE 933 >gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573] gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573] Length = 938 Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust. Identities = 361/985 (36%), Positives = 556/985 (56%), Gaps = 68/985 (6%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NAI G NM+ ++ ++ + AV Sbjct: 6 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E+Y YKANRP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 61 IFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G LE++ N +I K + + E Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAALGFRGSKTMAQKLEENR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + + L+ + + L+++ L F + + Sbjct: 241 DNANLSYQLATIKCDVELEESPQTLLKQTPDRDALMAWYGKLAFKSWLTEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 LD T GI E + +++ S ++ + + E + Sbjct: 292 ------LDGGT----GIVTADEQAKASSVTASNAANNAASNAAAIPESPAAQ-------- 333 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I+N +D W++KL+ +F TD++D + + ++ + + + Sbjct: 334 -----IDRSQYQTILNEQDFNLWLEKLQQAELFAFDTETDSLDYMVANLVGVSFA-VAEG 387 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D +D +++ LK E+E K+G N+KYD V+ Sbjct: 388 EAAYIPVAHDYLDAPQQLDRDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 438 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYG+ +RG D ML SYV +S HD+ S+A ++L ++ ++I K+ + ++I Sbjct: 439 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 498 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590 + ++A E+++V L+L + P ++E KL VY ++ P++ V+S++E TG+ I Sbjct: 499 DLQEAAQYAAEDADVTLRLHQRISP--LIEQDSKLAQVYREIEMPLVPVLSRIERTGVMI 556 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D LL S EI+ L LE+ Y+L+G+ FNLSSPKQL ILF ++K P KT +G Sbjct: 557 DDMLLSAQSQEIALRLDELEKKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 616 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ K ++E+R L+K+KSTY D LP IN T RVHT Y A T T Sbjct: 617 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTAT 675 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP++ + G++IR+AF++P K+++ DYSQIELRI+AH++ L Sbjct: 676 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 735 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F DIH AAEI GV IE+VS + RR AK +NF +IYG+S F LA QL IPR EA + Sbjct: 736 FREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 795 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ +YF R+PG+ +Y+E T++ + GYVETIFGRR+H EI S + R ERAAINA Sbjct: 796 YMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNAMRRKAAERAAINA 855 Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 P+QG+AADI ++AM+ V + ++ + K+L+Q+HDELVFEV E ++ + ME Sbjct: 856 PMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLME 915 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL +NW++ Sbjct: 916 SAA----ELAVPLVAEAGHGDNWEQ 936 >gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J] gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J] gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] Length = 937 Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust. Identities = 349/985 (35%), Positives = 549/985 (55%), Gaps = 64/985 (6%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + + L LVDGSS++YRA++A P L R +G P AI G NML KL R + A + Sbjct: 3 ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 57 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 A IFD TFR+++YP YK +R +P+ L Q+ + A +A G P + ++G EADD+I Sbjct: 58 ACIFDAKGKTFRDDLYPAYKEHRAPMPDDLRAQIEPIHEAVRALGWPILVVEGVEADDVI 117 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T A +EG + + DKDL QLV+ L +T+ E +D V K+G+PPE++V Sbjct: 118 GTLAERAAREGVRTIVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPERIVD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +L GD++DN+PG+P +G KTA L E+G+L+N++ +A IK EN+ E Sbjct: 178 YLSLIGDTVDNVPGVPKVGPKTAVKWLTEFGSLDNVIAHAGEIKGVVG-ENLRNTLEWLP 236 Query: 242 LSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 R+L+ ++ D ++ +P + LI + +L+ F F + + Sbjct: 237 KGRELLTVKLDCNLSKEVPTFDALIDGGEDKSKLVDFFSRYGFKTWLREAS-------GE 289 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 P + N ++ + + L Q + + E P ++ Sbjct: 290 ALPDTRSVGAARNAATPVKN--------YAGEAAQLQAQANLFDVEAPPDEI-------- 333 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 Y + ++ W+Q+L+ + T ++D ++ + I++S Sbjct: 334 --------KYETVTTEAQLESWMQRLDEVDLVCIDTETTSIDPMLAQLVGISLSVKPG-- 383 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTK----EILSYLKKFFENEHFLKIGHNIKYDKL 474 E +I ++ H D G + + +L+ +K + E+E K+G ++KYD Sbjct: 384 ------EACYIPVA-HRGPDVAGFDAAAQLSRDTVLARMKLWLEDESRKKVGQHLKYDAH 436 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPI 530 V + I++RG E D ML SYVL+S R+ H + ++A++ L + T + + S I Sbjct: 437 VFANHDIALRGIEHDTMLESYVLESHRN-HGMDALAERVLHLKTITYEAVCGKGASQIGF 495 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589 D++ + E+A E+++V L+L L PK+ + KL +VYE+++ P V+ +ME G+ Sbjct: 496 DEVPLDRATEYAAEDADVTLRLHRTLFPKVAEDDKLRYVYEQIEMPASIVLQKMERNGVL 555 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID D L + S E+ L+ LE + L+G+ FNLSSPKQ+GDI F ++K P KT +G Sbjct: 556 IDADRLAKQSNELGLRLIDLEAEAHKLAGQPFNLSSPKQIGDIFFNQMKLPVIKKTASGA 615 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + L+++ D P+ K +L++R L+K+KSTY D LP +N RT RVHT Y A+ + Sbjct: 616 PSTDEEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPRTGRVHTTYGQATAV 674 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRLAS +PNLQNIP++T+ G++IR AFI+P ++SADYSQIELRI+AH+++ L + Sbjct: 675 TGRLASTDPNLQNIPVRTEEGRRIREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLMR 734 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F D+HR AAE+F V +V+P RR AK INF +IYG+S F LA+ L I R A Sbjct: 735 AFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMSAFGLASNLGIGRDAAK 794 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 YI RYF R+PG Y+++T+ R+ GYVET+FGRR+ +IN R ERAAIN Sbjct: 795 LYIDRYFARYPGAASYMDETRQRAREQGYVETVFGRRLWLPDINGGNGPRRQAAERAAIN 854 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AAD+ + +M++V L+ + +++++Q+HDELV EVP++E+ + + M Sbjct: 855 APMQGTAADLIKLSMLAVQGWLDAEAMRSRLVMQVHDELVLEVPQDELAVVRERLPELMC 914 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 LRVPL + V NW+E Sbjct: 915 SVA----TLRVPLVAEVGVGANWEE 935 >gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01] gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01] Length = 930 Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust. Identities = 364/983 (37%), Positives = 546/983 (55%), Gaps = 72/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRAF+A P + + +P NA+ G NML +++ + IA V Sbjct: 6 ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A ++G V I + DKD+ QLV L +T+ +D E V++K+GIPPE ++ Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + E L+ + + LI L F +N + Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPSTDELIKLYGQLTFKSWLNELLE------G 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 V D +T +G + ++ D DT Sbjct: 295 GTGVVEADESTGAARGGSAASKADMDT--------------------------------- 321 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 S I+ Y I++ W+ KL+ +F TD++D + + ++ +T D+ Sbjct: 322 -SAVKIDRSQYETILDEASFNAWLDKLKASELFAFDTETDSLDYMVANLVGLSFAT-DEG 379 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L+ LK E+E K+G N+KYD VL Sbjct: 380 IAAYVPVAHDYLDAPQQLDRDW---------VLAQLKPILEDEAQAKVGQNLKYDASVLA 430 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ ++I K+ + ++I Sbjct: 431 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 490 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + +A E+++V L+L L + + KL VYE ++ P++ V+S++E TG+ ID Sbjct: 491 DLDEASPYAAEDADVTLRLHNRLFANIEQDDKLKTVYEEIEMPLVPVLSRIERTGVLIDD 550 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L S EI+ L LE+ Y+++ ++FN++SPKQL +LF K+ P KT +G T Sbjct: 551 MKLSAQSVEIAARLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 610 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 611 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 669 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L F Sbjct: 670 LSSTDPNLQNIPIRNEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFR 729 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH AAEI GV+IE VS + RR AK +NF +IYG+S F LA QL IPR EA Y+ Sbjct: 730 DGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 789 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 +YF R+PG+ +Y+E T++ + G+VETIFGRR+H EI S R ERAAINAP+ Sbjct: 790 DKYFERYPGVMQYMEDTRSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPM 849 Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + + E+ K+L+Q+HDELVFEV E ++ + + ME A Sbjct: 850 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQNLMESA 909 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L+VPL +NW + Sbjct: 910 A----ELKVPLVAEAGHGDNWDQ 928 >gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b] gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b] Length = 928 Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust. Identities = 360/983 (36%), Positives = 547/983 (55%), Gaps = 74/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLLMQYQP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHEMVKAMGLPLLAVTGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK+G V I + DKD+ QLV+P L +T+ + E V +K+G+PP ++ Sbjct: 121 LAQEAEKQGRPVLISTGDKDMAQLVTPGITLINTMTNTVLGPEEVEQKYGVPPSLIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 A+ GDS DNIPG+PG+G KTA LLQ G +++I N ++ K + + Sbjct: 181 AMMGDSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLEKVADLSFRGAKTMAAKLEQNR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++TDV + + E L + + + L + EF + + Sbjct: 241 DVAFLSYQLATIKTDVELELGCEQLTVNEPDVAVLQTLFSRYEFKRWL------------ 288 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++ E K + + T +L+DQ + + Sbjct: 289 --------VDLQEGKWL-------QGTKGSAPAQQALADQPAA---------------KA 318 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + +++D Y I++ +W++KL+ +F + TD++D + + +A + + Sbjct: 319 ETASVLSSDGYVTILDQDTFSRWLEKLKKSDVFAFDLETDSLDTLSANIVGLAFA-VAPG 377 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D + + +L+ LK E+ K+G N+KYD+ VL Sbjct: 378 EAAYLPVAHDYLDAPDQLDRAA---------VLAQLKPLLEDSKAAKVGQNLKYDRGVLK 428 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 Y I + G + D ML SY L+S HD+ S+A +WL++ T +EI K+ + ++I Sbjct: 429 NYDIELNGIKYDTMLESYCLNSVGGKHDMDSLAARWLNHKTVTFEEIAGKGKNQLTFNQI 488 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + Q +A E+++V LQL L + P+L E V+ ++ P++ V+S++E G+ IDQ Sbjct: 489 AIEQAGHYAAEDADVTLQLHLKMWPELEKEAGPKKVFTEIEMPLLKVISRVERNGVLIDQ 548 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 ++L + S E++ L LE+ +DL+GE FNLSS KQL ILF K KT G T Sbjct: 549 NILAKHSQELTTRLAELEQQAHDLAGEPFNLSSTKQLQTILFEKQGIKPTKKTPGGAPST 608 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + L ++ D P+ K ILE R LSK+KSTY D LP IN T RVHT Y A T TGR Sbjct: 609 SEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPVTGRVHTSYHQAVTATGR 667 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AFI+ P K++++ADYSQIELRI+AH+++ L F Sbjct: 668 LSSTDPNLQNIPVRNDEGRRIRQAFIAGPDKRIVAADYSQIELRIMAHLSQDKGLLAAFA 727 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR A+E+FGV + KVS + RR AK INF +IYG+S F L+ QL I EA Y+ Sbjct: 728 QGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYM 787 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ Y+E+T+ GYVET+ GRR+ +I S + R ERAAINAP+ Sbjct: 788 DLYFERYPGVLRYMEETREQAAAKGYVETLDGRRLWLPDITSSNAIRRKAAERAAINAPM 847 Query: 893 QGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAMI+V L + K KM++Q+HDELVFE+ ++ + +AS I ME + Sbjct: 848 QGTAADIIKRAMIAVDGWLLEQKDDKVKMIMQVHDELVFEIHQDAVASASDKIRQLMEGS 907 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPL V + NW + Sbjct: 908 ----MKLDVPLLVEVGTGENWDQ 926 >gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII] gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII] gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866] Length = 935 Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust. Identities = 369/985 (37%), Positives = 558/985 (56%), Gaps = 73/985 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P +A+ G NML L+ + +H AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTSAMYGVLNMLKSLISQVQP----THIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + + L+L + +LI + EF + +N V D Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINS--EQTPQKLFLERL 355 TTE +K +Q+ + S Q S NS E TP ++ Sbjct: 300 --------QTTEQP-------------VKMNQYQATSPAQNSVGNSAVENTP------KI 332 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 Q I+ Y ++ D+ W++KL + TD++D + + I+ + L+ Sbjct: 333 Q------IDRTKYESLLTQADLTHWIEKLNAAKLIAVDTETDSLDYMSANLVGISFA-LE 385 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + ++ ++D + T + ST L+ +K EN + KIG NIK+D+ + Sbjct: 386 NGEAAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESI 436 Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 R+GI ++G E D ML+SY L+S GR H++ +A+++L + + I KS + Sbjct: 437 FARHGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESIAGKGKSQLTF 494 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589 ++I Q E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ Sbjct: 495 NQIPLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVL 554 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID + L S EI+ L +LEE Y L+G+ FNL+S KQL +ILF KL P KT G Sbjct: 555 IDSNALFMQSNEIATRLTALEEQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGA 614 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + LE+++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T Sbjct: 615 PSTNEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTA 673 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH++ L Sbjct: 674 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLIN 733 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIHR AAEIFGV++++++ + RR+AK INF +IYG+S F L+ QL I R++A Sbjct: 734 AFSQGKDIHRSTAAEIFGVSLDEITSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQ 793 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 Y+ YF R+P + +++ + + GYVET+FGRR++ +INS + R ER AIN Sbjct: 794 KYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAIN 853 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AADI +RAMI + + + H +M++Q+HDELVFEV E++ + I ME Sbjct: 854 APMQGTAADIIKRAMIKLDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHME 912 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V + V NW E Sbjct: 913 AAA----ELVVPLIVEVGVGQNWDE 933 >gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603] gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603] Length = 938 Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust. Identities = 364/986 (36%), Positives = 559/986 (56%), Gaps = 70/986 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NAI G NM+ ++ ++ + AV Sbjct: 6 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E+Y YKANRP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 61 IFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G LE++ N +I K + + E Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAALGFRGSKTMAQKLEENR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + + L+ + + L+++ L F + + Sbjct: 241 DNANLSYQLATIKCDVELEESPQTLLKQTPDRDALMTWYGKLAFKSWLTEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 LD T GI E + +++ S ++ + + E + Sbjct: 292 ------LDGGT----GIVTADEQAKASSVTASNAANNAASNAAAIPESPAAQ-------- 333 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I+N +D W++KL+ +F TD++D + + ++ + + Sbjct: 334 -----IDRSQYQTILNEQDFNLWLEKLQQAELFAFDTETDSLDYMVANLVGVSFAVAEG- 387 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476 E +I ++ H D+ L +E +++ LK E+E K+G N+KYD V+ Sbjct: 388 -------EAAYIPVA-HDYLDAP--QQLDREWVITQLKPLLEDESKAKVGQNLKYDASVM 437 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 RYG+ +RG D ML SYV +S HD+ S+A ++L ++ ++I K+ + ++ Sbjct: 438 ARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 497 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQ 589 I + ++A E+++V L+L + P ++E KL VY ++ P++ V+S++E TG+ Sbjct: 498 IDLQEAAQYAAEDADVTLRLHQRISP--LIEQDSKLEQVYREIEMPLVPVLSRIERTGVM 555 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID LL S EI+ L LE+ Y+L+G+ FNLSSPKQL ILF ++K P KT +G Sbjct: 556 IDDMLLSAQSQEIALRLDELEKKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGT 615 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + L+++ D P+ K ++E+R L+K+KSTY D LP IN T RVHT Y A T Sbjct: 616 PSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVTA 674 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIP++ + G++IR+AF++P K+++ DYSQIELRI+AH++ L Sbjct: 675 TGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLD 734 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIH AAEI GV IE+VS + RR AK +NF +IYG+S F LA QL IPR EA Sbjct: 735 AFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQ 794 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 +Y+ +YF R+PG+ +Y+E T++ + GYVETIFGRR+H EI S + R ERAAIN Sbjct: 795 EYMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNAMRRKAAERAAIN 854 Query: 890 APIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 AP+QG+AADI ++AM+ V + ++ + K+L+Q+HDELVFEV E ++ + M Sbjct: 855 APMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLM 914 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A L VPL +NW++ Sbjct: 915 ESAA----ELAVPLVAEAGHGDNWEQ 936 >gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451] gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451] Length = 938 Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust. Identities = 363/985 (36%), Positives = 556/985 (56%), Gaps = 68/985 (6%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NAI G NM+ ++ ++ + AV Sbjct: 6 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E+Y YKANRP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 61 IFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G LE++ N +I K + + E Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAALGFRGSKTMAQKLEENR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + + L+ + + L+++ L F + + Sbjct: 241 DNANLSYQLATIKCDVELEESPQTLLKQTPDRDALMTWYGKLAFKSWLTEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 LD T GI E R +++ S ++ + + E + Sbjct: 292 ------LDGGT----GIVTADEQARASSVTASNAANNAASNAAAIPESPAAQ-------- 333 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I+N +D W++KL+ +F TD++D + + ++ + + Sbjct: 334 -----IDRSQYQTILNEQDFNLWLEKLQQAELFAFDTETDSLDYMVANLVGVSFAVAEG- 387 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E +I ++ H D+ + +++ LK E+E K+G N+KYD V+ Sbjct: 388 -------EAAYIPVA-HDYLDAP-QQLDRAWVIAQLKPLLEDESKAKVGQNLKYDASVMA 438 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYG+ +RG D ML SYV +S HD+ S+A ++L ++ ++I K+ + ++I Sbjct: 439 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 498 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQI 590 + ++A E+++V L+L + P ++E KL VY ++ P++ V+S++E TG+ I Sbjct: 499 DLQEAAQYAAEDADVTLRLHQRISP--LIEQDSKLAQVYREIEMPLVPVLSRIERTGVMI 556 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D LL S EI+ L LE+ Y+L+G+ FNLSSPKQL ILF ++K P KT +G Sbjct: 557 DDMLLSAQSQEIALRLDELEKKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTP 616 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ K ++E+R L+K+KSTY D LP IN T RVHT Y A T T Sbjct: 617 STNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTAT 675 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP++ + G++IR+AF++P K+++ DYSQIELRI+AH++ L Sbjct: 676 GRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDA 735 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F DIH AAEI GV IE+VS + RR AK +NF +IYG+S F LA QL IPR EA + Sbjct: 736 FREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQE 795 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ +YF R+PG+ +Y+E T++ + GYVETIFGRR+H EI S R ERAAINA Sbjct: 796 YMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNGIRRKAAERAAINA 855 Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 P+QG+AADI ++AM+ V + ++ + K+L+Q+HDELVFEV E ++ + ME Sbjct: 856 PMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQLME 915 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL +NW++ Sbjct: 916 SAA----ELAVPLVAEAGHGDNWEQ 936 >gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1] gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1] Length = 932 Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust. Identities = 366/985 (37%), Positives = 555/985 (56%), Gaps = 74/985 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NA+ G NML +++ E IA V Sbjct: 6 DNPLILIDGSSYLYRAFHAYPE-TMSNGEIPTNAVYGVVNMLRSMMRQFASERIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+ +YP+YKANRP +P+ L Q+ + +A G+P I + G EADD+I T Sbjct: 61 VFDAKGKTFRDNMYPEYKANRPPMPDDLRCQIEPLHNVIKAMGLPLICVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + A + G V I + DKD+ QLV L +T+ +D E V++K+GIPPE ++ Sbjct: 121 LAHQASQAGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G ++++ I K + + E+ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGIKDLYERLDDIAPLGFRGSKTMAKKLTEHK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + E L+ + N L L F +N + Sbjct: 241 DNAVLSYELATIKLDVELDCTPESLLKQQPNVDELTKLYGQLTFKSWLNEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 L+ T E + A+E+ + T+ +S SD+ S+++ Sbjct: 292 ------LEGGTGEVE--AVESAARKTTS------ASQSDEQSEMDR-------------- 323 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 SQ I+ +Y I+ + W++KL++ +F TD++D + + + Sbjct: 324 -SQVTIDRSAYETILTEESFNSWLEKLKSAPVIAFDTETDSLDYMVANLVGL-------- 374 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLV 475 SF +E + V + D G L ++ +L LK E++ K+G N+KYD V Sbjct: 375 ---SFAIEE-GVAAYVPVAHDYIGAPEQLDRQWVLEQLKPLLEDDAIAKVGQNLKYDASV 430 Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 L RY I ++G + D ML SYV +S HD+ S+A ++L ++ ++I K+ + + Sbjct: 431 LARYDIELKGIKFDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKAQLTFN 490 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQI 590 +I Q +A E+++V +L L +L E L +Y+ ++ P++ V+S++E TG+ I Sbjct: 491 QIDLEQASPYAAEDADVTFRLHQRLNAELEKNEALNRIYQDIEVPLVPVLSRIERTGVLI 550 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D LL S EI+ L LE+ ++++G++FNLSSPKQL I F K+ P KT +G Sbjct: 551 DDMLLGAQSQEIAARLDELEQKAFEIAGQEFNLSSPKQLQTIFFEKMGLPVIKKTPSGAP 610 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T T Sbjct: 611 STNEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPETGRVHTSYHQAVTAT 669 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIPI+ + G++IR+AFI+P K+++ DYSQIELRI+AH++ L Sbjct: 670 GRLSSTDPNLQNIPIRNEEGRRIRQAFIAPHGWKILAVDYSQIELRIMAHLSGDKALLDA 729 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+N DIH AAEI GV+I++V+ + RR AK INF +IYG+S F L+ QL IPR EA Sbjct: 730 FKNGKDIHAATAAEIIGVDIDQVTSEQRRRAKAINFGLIYGMSAFGLSKQLGIPRGEAQQ 789 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ YF R+PG+ +Y+E T++ + GYVETIFGRR+H EI S R ERAAINA Sbjct: 790 YMDTYFERYPGVMQYMEDTRSLAAEKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINA 849 Query: 891 PIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 P+QG+AADI ++AM+ V + ++ + + K+L+Q+HDELVFEV ++ I ME Sbjct: 850 PMQGTAADIIKKAMLLVDEWVQAEGEGKVKLLMQVHDELVFEVESSSLSEIESKIQKLME 909 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL +NW + Sbjct: 910 SAA----ELDVPLVAEAGHGDNWDQ 930 >gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 928 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 359/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + E L ++ L+ K EF + V + A Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++P T + I+ S S+ + ++ E Sbjct: 301 GVKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +Y I++ ++ W++KL+ +F TD++D + + ++ + ++ Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+ + L LK E+E K+G N+KYD+ VL Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++ +WL + T ++I K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VPL V + NW + Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926 >gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT] gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT] Length = 910 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 368/979 (37%), Positives = 542/979 (55%), Gaps = 87/979 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R G P A+ G NML +L K+ A + A +FD Sbjct: 4 LLLVDGSSYLYRAFHALPDL-RNKAGEPTGAMYGVLNMLRRL----HKDYPADYSACVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++IYPDYKA+RP +P+ L Q+ + A +A G P + I G EADD+I Sbjct: 59 AKGKTFRDDIYPDYKAHRPPMPDDLSRQIEPLHEAIRAMGWPLLMIDGVEADDVIGCLAQ 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE +G V I + DKD+ QLV+P L +T+ E +D V K+GIPP ++ L Sbjct: 119 QAEAQGMQVVISTGDKDMAQLVTPHIKLVNTMTNEILDEAGVEAKFGIPPSLIIDYLTLI 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEYAETARLSR 244 GDS+DN+PG+ +G KTA L ++G+L+NI+ NA+ I L++ T R Sbjct: 179 GDSVDNVPGVEKVGPKTAVKWLTQHGSLDNIIANAANIGGVVGNNLRKALDWLPTGR--- 235 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 +L+ +R + + + L+ + + +L + EF Sbjct: 236 ELIKIRCRLDLPHMVTELVTQPADNAKLAELYERFEF----------------------- 272 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 NT E+D +T T+ ++I+ P LF + + Sbjct: 273 --NTWRR-------ELDAASTAGTA--------PARIDPSSAPGDLFSASATHIGR---- 311 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 + I++ + +W+ L++ + T ++D +K + + SF V Sbjct: 312 --EFETILDQASLDRWLLLLKSAPLVALDTETTSLDPMQAKLVGM-----------SFSV 358 Query: 425 ET---IFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 E ++ L+ D TG + L L+ E+ K+G N+KYDK VL + Sbjct: 359 EAGKAAYVPLA----HDYTGAPQQLDFTAALRQLRPMLEDASIPKLGQNLKYDKHVLANH 414 Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISD 535 GI++ G D +L SYVL+S R+ H + +A + L + T ++I +P +IS Sbjct: 415 GIALNGITHDTLLQSYVLESHRT-HGMDDLAMRHLGVQTVTYEQIAGKGAKQVPFSQISI 473 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 E+A E++++ LQL L P++ + KL VY ++ P++D++ +E G+ IDQ + Sbjct: 474 ETAAEYAAEDADITLQLHQALYPQIEADDKLAFVYREIEMPLLDILYTIERNGVLIDQAM 533 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ S EI + L+ LE+ YD++G+ FNL SPKQL +ILF KL KT +G +T Sbjct: 534 LQAQSHEIGQKLIDLEQQAYDIAGQPFNLGSPKQLQEILFGKLGIKPLKKTPSGA-PSTD 592 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 +D+ Q D P+ K +LE+R L+K+KSTY D LP IN T RVHT YS A +TGRLA Sbjct: 593 EDVLQELALDYPLPKVLLEYRGLAKLKSTYTDKLPRMINPATGRVHTSYSQAVAITGRLA 652 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIP++T G++IR AFI+PP +ISADYSQIELRI+AH+++ L F Sbjct: 653 SSDPNLQNIPVRTAEGRRIREAFIAPPGASIISADYSQIELRIMAHLSQDEGLLSAFAKG 712 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIHR AAEIFGV ++VS + RR+AK INF +IYG+S F LA L I R A +YI R Sbjct: 713 EDIHRATAAEIFGVPRDEVSSEQRRYAKVINFGLIYGMSAFGLAQNLNIERGAAQNYIDR 772 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF R+PG+ EY++ T+ ++ GYVET FGRR+ EINSP R ERAAINAP+QG Sbjct: 773 YFARYPGVREYMQNTRMLAKEQGYVETFFGRRLWVPEINSPNGMRRAGAERAAINAPMQG 832 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AAD+ + AMI+V + L +H L +K+++Q+HDELV EVP+ E+ Q + M+ Sbjct: 833 TAADLIKLAMIAVDRWLREHNLNSKIIMQVHDELVLEVPDAELELVQQTLPQLMQGVA-- 890 Query: 955 KINLRVPLKVNIKVSNNWQ 973 L VPL + V NW+ Sbjct: 891 --KLDVPLLAEVGVGKNWE 907 >gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 928 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 360/982 (36%), Positives = 554/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + E L ++ L+ K EF + V + A Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P T + I+ SLS+ + ++ E Sbjct: 301 GAKPAAKPQET-----VVID--------------ESLSEPAAALSYE------------- 328 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +Y I++ ++ W++KL+ +F TD++D + + ++ + ++ Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+ + L LK E+E K+G N+KYD+ VL Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++ +WL + T ++I K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VPL V + NW + Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926 >gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110] gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110] Length = 940 Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust. Identities = 366/989 (37%), Positives = 552/989 (55%), Gaps = 70/989 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKES 56 M + L LVDGSS++YRAF+A P L R G P AI G NM+ L R+E Sbjct: 1 MTDKKTLLLVDGSSYLYRAFHAMPDL-RAVPGDPKSPATGAIRGMINMMTAL----RREV 55 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116 A + A IFD P TFR+++YP+YKANR +P+ L Q+ + + G P + + E Sbjct: 56 RADYAACIFDAPGKTFRDDLYPEYKANRSPMPDDLRSQIDPIHEVVKLMGWPVLCVPDIE 115 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T A ++G V + S DKDL QLV + DT+ +K D+ V ++G+PP Sbjct: 116 ADDVIGTLAKTAAQQGIEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTAEFGVPP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 M+ Q L GD++DN+PG+ +G KTAA L EYG+L+ ++ A+ +K + EN+ + Sbjct: 176 TLMIDYQTLVGDAVDNVPGVEKVGPKTAAKWLLEYGSLDALIERAAEVKGQAG-ENLRKA 234 Query: 237 AETARLSRKLVMLRTDVPIT-----IP-LEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 + LSR+LV +RTD + +P LE L + L F + F L+ + Sbjct: 235 LDKLPLSRQLVTIRTDCNLAAHVAGLPSLEGLPVGAPQTAELKPFYERFGFKSLVKSL-- 292 Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350 +A + P +++ N I+ ++ R Q L D+++++ + Sbjct: 293 ----EALEVPPELIEEN--------IKKQMARGAAASADQ-GGLFDESAELGA------- 332 Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 L+ S P +N Y I + W+ KLE A+ T ++D ++ + + Sbjct: 333 ----LEAAS--PASNLKYDTITTWEQFDAWLAKLEAAELAAIDTETTSLDEMVARIVGV- 385 Query: 411 ISTLDQKDDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 SF +E ++ L+ H D+ + E+L+ LK + EN K+G Sbjct: 386 ----------SFSIEPGAAAYVPLA-HNYPDAPAQLPF-DEVLARLKPWLENPAKKKLGQ 433 Query: 468 NIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 +IKYD+ V +GI ++G+ D ML SYVL++ R H +AS+A++ L + +++ Sbjct: 434 HIKYDRHVFANHGIEVQGYAHDTMLQSYVLEAHRP-HGLASLAERHLGRSGISYEDLCGK 492 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 IP ++ ++ E++ E+S+ L + L L P++ ++ L +L+ + + ++ Sbjct: 493 GAHQIPFSQVDIAKAAEYSCEDSDQTLDVHLALWPQIERDEKLRFIYQLEMDSSEALYRV 552 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E G+ ID L S E+ +++LE+ Y+++G+ FNL SPKQ+G+I FTKL P Sbjct: 553 ERNGVLIDAPTLAAQSHELGTRIMALEQEAYEIAGQPFNLGSPKQIGEIFFTKLGLPVVK 612 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KT +G T + LE++ D P+ ILE R LSK+K TY D L N RT RVHT Y Sbjct: 613 KTPSGAPSTDEEVLEKL-AEDYPLPAKILEHRGLSKLKGTYTDKLGQLANPRTGRVHTHY 671 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 + A +TGRL+S +PNLQNIPI+T G+++R AFI+PP + SADYSQIELRI+AHI+ Sbjct: 672 AQAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFIAPPGSVIASADYSQIELRIMAHISG 731 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L + F +D+HR AAE+FG ++VS + RR+AK INF +IYG+S F LA L I Sbjct: 732 DESLLRAFREGIDVHRATAAEVFGATPDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGI 791 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 AA YI RYF R+PG+ Y+++TK ++ GYVET+FGRR++ EINSP R Sbjct: 792 ETKAAASYIDRYFARYPGVKAYMDETKALAKEKGYVETVFGRRLYLPEINSPNGPRRGGA 851 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ERAAINAP+QG+AAD+ + +MI V L++ K AT+M++Q+HDELVFEVPE EI Sbjct: 852 ERAAINAPMQGTAADLIKLSMIKVQNVLDEEKRATRMIMQVHDELVFEVPEAEIEWVRTE 911 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972 I M L+VPL I + NW Sbjct: 912 IPRLMAGVA----ELKVPLLAEIGIGPNW 936 >gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032] gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032] Length = 966 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 363/980 (37%), Positives = 552/980 (56%), Gaps = 73/980 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 45 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQ----PTHAAV 99 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 100 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 159 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A G AV I + DKD+ QLV+P L +T+ + E V K+G+PPE ++ Sbjct: 160 LAKEAAAAGRAVLISTGDKDMAQLVTPDVTLINTMTNTVLGPEEVCAKYGVPPELIIDFL 219 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + N +I + K + + Sbjct: 220 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDALYANPEKIAELSFRGAKTMAAKLEQNK 279 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++TDV + + + L ++ L++ + EF + T D +A Sbjct: 280 DVAYLSYQLATIKTDVELELSHDRLEVQQPLADELLALFRQYEFKRW------TSDLEAG 333 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + K A +E + +LS Sbjct: 334 KWL-------QSRGKPAAKPSETIVVEAEPEEEAVALS---------------------- 364 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ Y I++ + +Q W+++++T + TD++D + + I+ +T + Sbjct: 365 -------SERYVTILDEEMLQAWIERIKTAPVVAVDTETDSLDNLTANLVGISFAT-EPG 416 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L LK E+E +K+G N+K+D+ +L Sbjct: 417 LAAYIPVAHDYLDAPDQLPRD---------RVLELLKPLLEDESLVKVGQNLKFDRGILQ 467 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 YGI +RG D ML SY+LDS HD+ S++ +WL +T ++I K+ + ++I Sbjct: 468 NYGIELRGIVFDTMLESYILDSVSGRHDMDSLSSRWLKHTTITFEQIAGKGKNQLTFNQI 527 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q +A E+++V LQL L + PKL K L+++E ++ P++ V+S++E G++ID Sbjct: 528 DLEQAGRYAAEDADVTLQLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDP 587 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S EI+ L LE+ ++++GE FNLSS KQL ILF K KT G T Sbjct: 588 AVLHAHSQEIALKLAELEQKAHEIAGEPFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 647 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K IL++R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 648 SEEVLEELAL-DYPLPKVILQYRGLAKLKSTYTDKLPQMINPKTGRVHTSYHQAVTATGR 706 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ D G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 707 LSSTDPNLQNIPVRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLSAFA 766 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E VS + RR AK INF +IYG+S F L+ QL IPR E+ Y+ Sbjct: 767 EGKDIHRATAAEVFGLPLESVSNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYM 826 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +IN+ ++ R ERAAINAP+ Sbjct: 827 DLYFERYPGVLEYMERTRKQAKEQGYVETLDGRRLYLPDINASNAARRAGAERAAINAPM 886 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V LE + KM++Q+HDELVFEV ++++ SQ I ME + Sbjct: 887 QGTAADIIKRAMIAVDGWLEKEQPRVKMIMQVHDELVFEVHKDDVEAVSQKIHELMENS- 945 Query: 953 LPKINLRVPLKVNIKVSNNW 972 + L VPL V + NW Sbjct: 946 ---MQLDVPLLVEVGSGVNW 962 >gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1] gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1] Length = 930 Score = 603 bits (1556), Expect = e-170, Method: Compositional matrix adjust. Identities = 365/982 (37%), Positives = 556/982 (56%), Gaps = 72/982 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + +H AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQP----THIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKS 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + + L+L + +LI + EF + +N V D Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 TTE +K +Q+ + S S + E TP ++Q Sbjct: 300 --------QTTEQP-------------VKMNQYKATSQDQSAV--ENTP------KIQ-- 328 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 I+ Y ++ D+ +W++KL + + TD++D + + I+ + L+ + Sbjct: 329 ----IDRTKYETLLTQADLTRWIEKLNSAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 ++ ++D + T + ST L+ +K EN + KIG NIK+D+ + R Sbjct: 384 AAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434 Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 +GI ++G E D ML+SY L+S GR H++ +A+++L + + + KS + ++I Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ ID Sbjct: 493 PLQQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L S EI+ L +LE+ Y L+G+ FNL+S KQL +ILF KL P KT G T Sbjct: 553 DALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPST 612 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE+++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T TGR Sbjct: 613 NEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH++ L F Sbjct: 672 LSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A Y+ Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYM 791 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+P + +++ + + GYVET+FGRR++ +INS + R ER AINAP+ Sbjct: 792 DLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI + + + H +M++Q+HDELVFEV E++ + I +E A Sbjct: 852 QGTAADIIKRAMIKLDEVIR-HDPNIEMIMQVHDELVFEVRSEKVAFFREQIKQHIEAAA 910 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + V NW E Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928 >gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3] gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3] Length = 930 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 364/983 (37%), Positives = 545/983 (55%), Gaps = 72/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRAF+A P + + +P NA+ G NML +++ + IA V Sbjct: 6 ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 VFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A ++G V I + DKD+ QLV L +T+ +D E V++K+GIPPE ++ Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVVEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + E L+ + + LI L F +N + Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPSTDELIKLYGQLTFKSWLNELLE------G 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 V D +T +G + ++ D DT Sbjct: 295 GTGVVEADESTGAARGGSASSKADMDT--------------------------------- 321 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 S I+ Y I++ W+ KL+ +F TD++D + + ++ +T D+ Sbjct: 322 -SAVKIDRSQYETILDEASFNAWLDKLKASELFAFDTETDSLDYMVANLVGLSFAT-DEG 379 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L+ LK E+E K+G N+KYD VL Sbjct: 380 IAAYVPVAHDYLDAPQQLDRDW---------VLAQLKPILEDEAQAKVGQNLKYDASVLA 430 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ ++I K+ + ++I Sbjct: 431 RYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 490 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + +A E+++V L+L L + EKL VYE ++ P++ V+S++E TG+ ID Sbjct: 491 ELDEASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPVLSRIERTGVLIDD 550 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L S EI+ L LE+ Y+++ ++FN++SPKQL +LF K+ P KT +G T Sbjct: 551 MKLSAQSVEIAARLDELEQKAYEIAEQEFNMNSPKQLQALLFEKMGLPVIKKTPSGTPST 610 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 611 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 669 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AF++ K+++ DYSQIELRI+AH++ L F Sbjct: 670 LSSTDPNLQNIPIRNEEGRRIRQAFVASTGYKILAVDYSQIELRIMAHLSGDQALLDAFR 729 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH AAEI GV+IE VS + RR AK +NF +IYG+S F LA QL IPR EA Y+ Sbjct: 730 DGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 789 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 +YF R+PG+ +Y+E T++ + G+VETIFGRR+H EI S R ERAAINAP+ Sbjct: 790 DKYFERYPGVMQYMEDTRSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPM 849 Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + + E+ K+L+Q+HDELVFEV E ++ + + ME A Sbjct: 850 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQNLMESA 909 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L+VPL +NW + Sbjct: 910 A----ELKVPLVAEAGHGDNWDQ 928 >gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D] gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D] Length = 937 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 354/987 (35%), Positives = 551/987 (55%), Gaps = 68/987 (6%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + + L LVDGSS++YRA++A P L R +G P AI G NML KL R + A + Sbjct: 3 ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 57 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 A IFD TFR+++YP YK +R +P+ L Q+ + A +A G P + I+G EADD+I Sbjct: 58 ACIFDAKGKTFRDDLYPAYKEHRAPMPDDLRAQIEPIHEAVRALGWPILVIEGVEADDVI 117 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T A +EG + + DKDL QLV+ L +T+ E +D V K+G+PPE++V Sbjct: 118 GTLAERAAREGVRTIVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPERIVD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +L GD++DN+PG+P +G KTA L E+G+L+N++ A IK EN+ E Sbjct: 178 YLSLIGDTVDNVPGVPKVGPKTAVKWLTEFGSLDNVIARAGEIKGVVG-ENLRNTLEWLP 236 Query: 242 LSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 R+L+ ++ D ++ +P + LI + +L+ F F + + D Sbjct: 237 KGRELLTVKLDCDLSKEVPTFDALIDGGEDKSKLVDFFSRYGFKTWLREASGEALPD--- 293 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIK--TSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 T + G A + T +K + + L Q + + E P ++ Sbjct: 294 ----------TRSVGAARKAA----TPVKNYAGEAAQLQAQANLFDVEAPPDEI------ 333 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 Y + ++ W+Q+L+ + T ++D ++ + I++S Sbjct: 334 ----------KYETVTTEAQLESWMQRLDEVDLVCIDTETTSIDPMLAQLVGISLSVKPG 383 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTK----EILSYLKKFFENEHFLKIGHNIKYD 472 E +I ++ H D G + + +L+ +K + E+E K+G ++KYD Sbjct: 384 --------EACYIPVA-HRGPDVAGLDAAAQLSRDTVLARMKLWLEDESRKKVGQHLKYD 434 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSI 528 V + I++RG E D ML SYVL+S R+ H + ++A++ L + T + + S I Sbjct: 435 AHVFANHDIALRGIEHDTMLESYVLESHRN-HGMDALAERVLHLKTITYEAVCGKGASQI 493 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587 D++ + +A E+++V L+L L PK+ + KL +VYE+++ P V+ +ME G Sbjct: 494 GFDEVPLDRATAYAAEDADVTLRLHRTLFPKVAEDDKLRYVYEQIEMPTSIVLQKMERNG 553 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + ID D L + S E+ L+ LE + L+G+ FNL SPKQ+GDI F ++K P KT + Sbjct: 554 VLIDADRLAKQSNELGLRLIELEAEAHKLAGQPFNLGSPKQIGDIFFNQMKLPVIKKTAS 613 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + L+++ D P+ K +L++R L+K+KSTY D LP +N RT RVHT Y A+ Sbjct: 614 GAPSTDEEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPRTGRVHTTYGQAT 672 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 +TGRLAS +PNLQNIP++T+ G++IR AFI+P ++SADYSQIELRI+AH+++ L Sbjct: 673 AVTGRLASTDPNLQNIPVRTEEGRRIREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGL 732 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F D+HR AAE+F V +V+P RR AK INF +IYG+S F LA+ L I R Sbjct: 733 MRAFREGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMSAFGLASNLGIGRDA 792 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A YI RYF R+PG Y+E+T+ R++GYVET+FGRR+ +IN R ERAA Sbjct: 793 AKLYIDRYFARYPGAANYMEETRQSAREHGYVETVFGRRLWLPDINGGNGPRRQAAERAA 852 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AAD+ + +M++V LE + +++++Q+HDELV EVP++E+ + + Sbjct: 853 INAPMQGTAADLIKLSMLAVQGWLEAEAMRSRLVMQVHDELVLEVPQDELAVVRERLPEL 912 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M LRVPL + V NW+E Sbjct: 913 MCSVA----TLRVPLVAEVGVGANWEE 935 >gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] Length = 931 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 365/984 (37%), Positives = 547/984 (55%), Gaps = 73/984 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRAF+A P + + +P NA+ G NML +++ E IA V Sbjct: 6 ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASERIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E+Y +YKANRP +P+ L Q+ + +A G+P I + G EADD+I T Sbjct: 61 VFDAKGKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A ++G V I + DKD+ QLV L +T+ +D E V++K+GIPPE ++ Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + E L+ + N LI L F +N + + + Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLTFKSWLNEL---LEGGSG 297 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDT-TIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 +E V L + + + E++ TI SQ+ ++ D+ S Sbjct: 298 TVEAVELAGSAQASSSSSSHAEMETSAVTIDRSQYETILDEAS----------------- 340 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 W++KL+ +F TD++D + + ++ + +D+ Sbjct: 341 --------------------FNAWLEKLKAAELFAFDTETDSLDYMVANLVGLSFA-IDE 379 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 V ++D +D +L LK E++ K+G N+KYD VL Sbjct: 380 GIAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDASVL 430 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ ++I K+ + ++ Sbjct: 431 ARYGIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 490 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591 I Q +A E+++V L+L L + EKL VYE ++ P++ V+S++E TG+ ID Sbjct: 491 IELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLID 550 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L S EI+ L LE+ Y+++ ++FN++SPKQL ILF K+ P KT +G Sbjct: 551 DMKLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPS 610 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TG Sbjct: 611 TNEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATG 669 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L F Sbjct: 670 RLSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAF 729 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DIH AAEI GV+I++VS + RR AK +NF +IYG+S F LA QL IPR EA Y Sbjct: 730 RDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAY 789 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + +YF R+PG+ +Y+E T++ GYVETIFGRR+H EI S R ERAAINAP Sbjct: 790 MDKYFERYPGVMQYMEDTRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAP 849 Query: 892 IQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 +QG+AADI ++AM+ V + + E+ K+L+Q+HDELVFEV E ++ + ME Sbjct: 850 MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMES 909 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A L+VPL +NW + Sbjct: 910 AA----ELKVPLVAEAGHGDNWDQ 929 >gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 928 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 360/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + E L ++ L+ K EF + V + A Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P T + I+ S S+ + ++ E Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +Y I++ ++ W++KL+ +F TD++D + + ++ + ++ Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+ + L LK E+E K+G N+KYD+ VL Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++ +WL + T ++I K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ S+ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVSKRI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VPL V + NW + Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926 >gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180] gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180] Length = 911 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 352/975 (36%), Positives = 541/975 (55%), Gaps = 75/975 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVD S +++RA++A P L+ G P A+ G NML KL+++ R E I V+FD Sbjct: 7 LILVDASGYLFRAYHALPKLTNSR-GEPTGALVGVLNMLRKLIEDHRPEYIG----VVFD 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR++ YPDYKANRP +PE L Q+ +R +A G+P + + G EADD+I T Sbjct: 62 AGGRGFRHDRYPDYKANRPAMPEDLRAQIEPLRTIIRAMGLPLLVVPGVEADDVIGTLAT 121 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A G I + DKDL QLV L +T+ ++D + V +K+G+PPE++V AL Sbjct: 122 QAAATGLPTLISTGDKDLAQLVGEHVTLINTMTGTRLDPDGVREKFGVPPERIVDYLALM 181 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DN+PG+P G KTAA + EYG+L+ ++ A IK K E++ + L+R L Sbjct: 182 GDSVDNVPGVPKCGPKTAAKWIAEYGDLDGVMAQAGTIKGKIG-ESLRAVLDQLPLARDL 240 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 ++ DV + + L + L ++ + LE +L+ Sbjct: 241 TTIKRDVALDLGPTDLRPTPPDVETLRNWYERLESRRLLA-------------------- 280 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 T + G+A T+ S ++ +++ + PQ Sbjct: 281 -TLDGVGVA---------GAPTAARSHEAEHSTESEAGTEPQ------------------ 312 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I+ ++ W+ +L+T +F T +DA ++ + ++ + L+ + Sbjct: 313 -YELILTEAALEDWLSRLQTADLFAFDTETTALDAMQAELVGVSFA-LEPGRAAYVPLAH 370 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 ++ +D +L+ LK E+ K+G N+KYD VL RY I++RG Sbjct: 371 VYPGAPDQLDRD---------RVLARLKPLLEDPGRPKVGQNLKYDMSVLARYDIALRGI 421 Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 D +L SYVLDS + HD+ S+A+++L + +++ I D++ Q +A Sbjct: 422 AHDTLLESYVLDS-TARHDLDSLAKRFLDHDTIRFEDVAGKGAKQIGFDQVPLEQAGPYA 480 Query: 543 IENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++ V L+L + +P+L V L +Y ++ P++ V+S++E G+ ID L SAE Sbjct: 481 AEDAEVTLRLHRVFQPRLAAVPALERLYREIEMPLVPVLSRLERAGVLIDSARLATQSAE 540 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 +++ +L LEE+ Y ++G +FNL SPKQ+G I F +L P AKT G T+ LE++ Sbjct: 541 LARKILELEESAYRVAGRRFNLGSPKQIGAIFFDELGLPVVAKTPKGAPSTSEDVLERLA 600 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 + + + IL+ R LSK++STY D LP +++ T RVHT Y A T TGRL+S +PNLQ Sbjct: 601 AEGHELPRIILDHRGLSKLRSTYTDKLPRMVDRDTGRVHTSYHQAVTATGRLSSSDPNLQ 660 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+T+ G++IRRAFI+ +L++ADYSQIELRI+AH++ L F DIHR Sbjct: 661 NIPIRTEEGRRIRRAFIAASGHRLLAADYSQIELRIMAHLSGDERLLAAFAGGQDIHRAT 720 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAEI G+ E V+ + RR AK INF +IYG+S F LA QL I R A +Y+ RYF R+PG Sbjct: 721 AAEILGLAPEDVTGEQRRSAKAINFGLIYGMSAFGLARQLGIERGAAQEYVDRYFERYPG 780 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + +++++T+ VR++GYVET+FGRR+H EI + R ER AINAP+QG+AADI + Sbjct: 781 VRDFMDRTRRQVREDGYVETLFGRRLHLPEIGHGNQARRAAAERTAINAPMQGTAADIIK 840 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 RAMI+V +E + A +++LQ+HDELV EV E + + +ME A L VP Sbjct: 841 RAMIAVDAWIEAEQPAARLILQVHDELVLEVAESAVEETRARVCAAMETAA----ELAVP 896 Query: 962 LKVNIKVSNNWQEEN 976 L V+I NW + + Sbjct: 897 LVVDIGEGANWDDAH 911 >gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586] gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586] Length = 938 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 365/987 (36%), Positives = 558/987 (56%), Gaps = 72/987 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NAI G NM+ +++ + IA V Sbjct: 6 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMVRSMMRQFASDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E+Y YKANRP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 61 IFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G LE++ N +I K + + E Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAALGFRGSKTMAQKLEENR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + + L+ + + L+++ L F + + Sbjct: 241 DNANLSYQLATIKCDVELEESPQTLLKQTPDRDALMTWYGKLAFKSWLTEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS-LSDQTSKINSEQTPQKLFLERLQ 356 LD T GI E + +++ S ++ + + I + Q Sbjct: 292 ------LDGGT----GIVTADEQAKVSSVTASNTANNAASHGAAIPASPAVQ-------- 333 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 I+ Y I+N +D W++KL+ +F TD++D + + ++ + + Sbjct: 334 ------IDRSQYQTILNEQDFNLWLEKLQQAELFAFDTETDSLDYMVANLVGVSCAVAEG 387 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLV 475 E +I ++ H D+ L +E +++ LK E+E K+G N+KYD V Sbjct: 388 --------EAAYIPVA-HDYLDA--PQQLDREWVIAQLKPLLEDESKAKVGQNLKYDASV 436 Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 + RYG+ +RG D ML SYV +S HD+ S+A ++L ++ ++I K+ + + Sbjct: 437 IARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFN 496 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGI 588 +I + ++A E+++V L+L + P ++E KL VY ++ P++ V+S++E TG+ Sbjct: 497 QIDLQEAAQYAAEDADVTLRLHQRISP--LIEQDSKLEQVYREIEMPLVPVLSRIERTGV 554 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 I+ LL S EI+ L LE+ Y+L+G+ FNLSSPKQL ILF ++K P KT +G Sbjct: 555 MINDMLLSAQSQEIALRLDELEKKAYELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSG 614 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L+++ D P+ K ++E+R L+K+KSTY D LP IN T RVHT Y A T Sbjct: 615 TPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRVHTSYHQAVT 673 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AF++P K+++ DYSQIELRI+AH++ L Sbjct: 674 ATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALL 733 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIH AAEI GV IE+VS + RR AK +NF +IYG+S F LA QL IPR EA Sbjct: 734 DAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEA 793 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +Y+ +YF R+PG+ +Y+E T++ + GYVETIFGRR+H EI S R ERAAI Sbjct: 794 QEYMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNGMRRKAAERAAI 853 Query: 889 NAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI ++AM+ V + ++ + K+L+Q+HDELVFEV E ++ + Sbjct: 854 NAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEESSLSEIESKVQQL 913 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A L VPL +NW + Sbjct: 914 MESAA----ELAVPLVAEAGHGDNWDQ 936 >gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20] gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20] gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] Length = 930 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 364/982 (37%), Positives = 557/982 (56%), Gaps = 72/982 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P +A+ G NML L+ + +H AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPSLTNAA-GEPTSAMYGVLNMLKSLISQVQ----PTHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A G V I + DKD+ QLV L +T+ +D + VI+K+GIPPE ++ A Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRKGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKN 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + + L+L + +LI + EF + +N V D Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 TTE +K +Q+ + S S + E TP ++Q Sbjct: 300 --------QTTEQP-------------VKMNQYKATSQDQSAV--ENTP------KIQ-- 328 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 I+ Y ++ D+ +W++KL + TD++D + + I+ + L+ + Sbjct: 329 ----IDRTKYETLLTQADLTRWIEKLNAAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 ++ ++D + T + ST L+ +K EN + KIG NIK+D+ + R Sbjct: 384 AAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434 Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 +GI ++G E D ML+SY L+S GR H++ +A+++L + + + KS + ++I Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ ID Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L S EI+ L +LE+ Y L+G+ FNL+S KQL +ILF KL+ P KT G T Sbjct: 553 DALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLELPVLQKTPKGAPST 612 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE+++ + + K +++ R LSK+KSTY D LP +N +T RVHT Y A T TGR Sbjct: 613 NEEVLEELSYS-HELPKILVKHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGR 671 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G+ IR+AFI+ +++ADYSQIELRI+AH++ L F Sbjct: 672 LSSSDPNLQNIPIRNEEGRHIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFS 731 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A Y+ Sbjct: 732 QGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYM 791 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+P + +++ + + GYVET+FGRR++ +INS + R ER AINAP+ Sbjct: 792 DLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPM 851 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI + + + H +M++Q+HDELVFEV E++ + I ME A Sbjct: 852 QGTAADIIKRAMIKLDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA 910 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + V NW E Sbjct: 911 ----ELVVPLIVEVGVGQNWDE 928 >gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901] gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901] Length = 908 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 357/981 (36%), Positives = 536/981 (54%), Gaps = 93/981 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G P AI G NML +L K+ S AV+FD Sbjct: 6 LILVDGSSYLYRAFHALPPLTTSK-GQPTGAIKGVVNMLRRL----EKDYPESPIAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKANRP +P+ L Q+ + +A G+P + ++G EADD+I T Sbjct: 61 AKGKTFRDDMYKDYKANRPPMPDDLRSQVEPLHELIRAMGLPLLIVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 ++G V + + DKD+ QLV+ L +T+ + +DIE V K+GIPPE ++ AL Sbjct: 121 EGTEKGLPVVVSTGDKDMAQLVNEHITLVNTMTDTVMDIEGVKAKFGIPPELIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETA 240 GD +DNIPG+PG+G KTA LLQ G L +I I K + + E + A Sbjct: 181 GDKVDNIPGVPGVGEKTALALLQNLGGLNDIYTRLDEIASLSFRGSKSMAKKLEENRDNA 240 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +L ++TDVP+ +P+E L + L+++ + LEF I + D + Sbjct: 241 YLSYELATIKTDVPLELPIEELKPAPADKAGLMNWYQELEFKGWIAELENAPADDDGHAV 300 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 P + +A+ETE Sbjct: 301 P----------EAVALETE----------------------------------------- 309 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 Y +++ + W++KL+ +F T +++ ++ + + Sbjct: 310 -------YDVVLDESAFEAWLEKLQAAALFAFDTETTSLNYMDAEIVGV----------- 351 Query: 421 SFKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 SF VE V + D G L++E +L+ LK EN+ K+G N+KYD VL Sbjct: 352 SFAVEP-GKAAYVPVAHDYLGAPEQLSREHVLARLKPLLENDGLKKVGQNLKYDANVLAN 410 Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 Y I+++G D ML SYV +S S HD+ ++A+ L + ++I + ++I Sbjct: 411 YDIALKGIAYDTMLESYVHNSTGSRHDMDTLAELHLGHKTIHFEDIAGKGAKQLTFNQIK 470 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 + +A E++++ L+L L PK+ E L V+ ++ P++ ++S++E G +D Sbjct: 471 LEEAGPYAAEDADITLRLHQALWPKVAEAEGLKTVFNDVELPLVSILSRIERNGALLDTK 530 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 LL ++S + +++ LE+ Y+L+GE+FNL SPKQL ILF K+ P KT G T Sbjct: 531 LLGELSLQHGASIVKLEKEAYELAGEEFNLGSPKQLATILFEKMNLPVVKKTAKGAPSTN 590 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + ++++ D P+ IL+ R LSK+KSTY D LP +NK+T RVHT Y A TGRL Sbjct: 591 EEVMQELAL-DYPLPSVILQHRSLSKLKSTYTDKLPTMVNKKTGRVHTSYHQAVAATGRL 649 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIPIKTD G++IR+AFI+P K+++ADYSQIELRI+AH++ L + F Sbjct: 650 SSSDPNLQNIPIKTDEGRRIRQAFIAPAGYKMVAADYSQIELRIMAHLSNDPGLQKAFAE 709 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 LD+H+ AAE+FG +E VS + RR AK INF +IYG+S F LA QLRI R++A YI Sbjct: 710 GLDVHKSTAAEVFGTALENVSSEQRRSAKAINFGLIYGMSAFGLARQLRIGRNDAQTYID 769 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF R+PG+ EY+ + + GYVET+ GRR++ EINS R ER AINAP+Q Sbjct: 770 TYFERYPGVAEYMANIRKSAAEKGYVETLLGRRLYLPEINSSNGMRRQAAERVAINAPMQ 829 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI +RAMI V L+ ++ ++++Q+HDELV EV + S + M A + Sbjct: 830 GTAADIIKRAMIDVDAWLQTEQIDARIIMQVHDELVLEVAAADAEAISAKLCDIMSSAVV 889 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 L VPL V + +NW + Sbjct: 890 ----LSVPLLVEAGIGDNWDQ 906 >gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551] gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551] Length = 946 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 357/996 (35%), Positives = 562/996 (56%), Gaps = 79/996 (7%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + + L LVDGSS++YRA++A P L R +G P AI G NML KL R + A + Sbjct: 5 ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 59 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 A +FD TFR+E+YP YK +R +P+ L Q+ + A +A G P + + G EADD+I Sbjct: 60 ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVI 119 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T A +EG + + DKDL QLV+ L +T+ E +D V K+G+PPEK+V Sbjct: 120 GTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPEKIVD 179 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +L GD++DN+PG+P +G KTA L EYG+L+N++ A IK EN+ + Sbjct: 180 YLSLIGDTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVG-ENLRNTLDWLP 238 Query: 242 LSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 R+L+ ++TD ++ +P + L+ + RL F F + R AT Sbjct: 239 KGRELLTVKTDCDLSPDVPSFDALVDGGEDRARLADFFGRYGFKTWL-REATGES----- 292 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS---SLSDQTSKINSEQTPQKLFLERL 355 + T + G A R Q++ + Q S + E P ++ Sbjct: 293 -------LPDTRSVGAA------RKAATPVKQYAPEAAAQQQASLFDVETPPAEV----- 334 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 Y + ++ W++ L+ T ++D ++ + I++S Sbjct: 335 -----------KYETVTTEAQLESWMRLLDASELVCIDTETTSIDPMLAQLVGISLSVQP 383 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNT---LTKE-ILSYLKKFFENEHFLKIGHNIKY 471 + +I ++ H D +G + L++E +L+ ++ + E+E K+G ++KY Sbjct: 384 G--------QACYIPVA-HRGPDVSGLDAPAQLSREAVLARMRLWLEDETRGKVGQHLKY 434 Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSS 527 D V +GI++RG D ML SYVL S R+ H + ++A++ L + T +E+ + Sbjct: 435 DAHVFANHGIALRGITHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGAAQ 493 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586 I D+++ + E+A E++++ L+L L PK+ + KL +VYER++ P V+ +ME T Sbjct: 494 IGFDEVALDRATEYAAEDADITLRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERT 553 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G+ +D + L + SAE+ + LL+LE+ Y L+G+ FNL+SPKQ+G+I FT+LK P KT Sbjct: 554 GVLVDAERLARQSAELGQRLLALEQEAYALAGQPFNLNSPKQIGEIFFTQLKLPVVKKTA 613 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 +G T + L+++ D P+ K +L++R L+K+KSTY D LP +N +T RVHT Y A Sbjct: 614 SGAPSTDEEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQA 672 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 + +TGRLAS +PNLQNIP++T+ G++IR AF++P ++SADYSQIELRI+AH++ Sbjct: 673 TAVTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDG 732 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F D+HR AAE+FGV +V+ + RR+AK INF +IYG+S F LA+ L I R Sbjct: 733 LMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRD 792 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 A YI RYF R+PG+ Y+++T+ + GYVET+FGRR+ +IN R ERA Sbjct: 793 AAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERA 852 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLA--------TKMLLQIHDELVFEVPEEEIT 938 AINAP+QG+AAD+ + +M++V LE A +++++Q+HDELV EVP++E+ Sbjct: 853 AINAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLVMQVHDELVLEVPQDELA 912 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M L L VPL + V +NW+E Sbjct: 913 RVRERLPELMCGVAL----LSVPLVAEVGVGSNWEE 944 >gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 928 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 359/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + E L ++ L+ K EF + V + A Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P T + I+ S S+ + ++ E Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +Y I++ ++ W++KL+ +F TD++D + + ++ + ++ Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+ + L LK E+E K+G N+KYD+ VL Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++ +WL + T ++I K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VPL V + NW + Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926 >gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] Length = 931 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 365/984 (37%), Positives = 546/984 (55%), Gaps = 73/984 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRAF+A P + + +P NA+ G NML +++ E IA V Sbjct: 6 ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASERIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E+Y +YKANRP +P+ L Q+ + +A G+P I + G EADD+I T Sbjct: 61 VFDAKGKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A ++G V I + DKD+ QLV L +T+ +D E V++K+GIPPE ++ Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + E L+ + N LI L F +N + + + Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLTFKSWLNEL---LEGGSG 297 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDT-TIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 +E V L + + + E++ TI SQ+ ++ D+ S Sbjct: 298 TVEAVELAGSAQASSSSSSHAEMETSAVTIDRSQYETILDEAS----------------- 340 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 W++KL+ +F TD++D + + ++ + +D+ Sbjct: 341 --------------------FNAWLEKLKAAELFAFDTETDSLDYMVANLVGLSFA-IDE 379 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 V ++D +D +L LK E++ K+G N+KYD VL Sbjct: 380 GIAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDASVL 430 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ ++I K+ + ++ Sbjct: 431 ARYGIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQ 490 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591 I Q +A E+++V L+L L + EKL VYE ++ P++ V+S++E TG+ ID Sbjct: 491 IELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLID 550 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L S EI+ L LE+ Y+++ ++FN++SPKQL ILF K+ P KT +G Sbjct: 551 DMKLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPS 610 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TG Sbjct: 611 TNEEVLHELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATG 669 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L F Sbjct: 670 RLSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAF 729 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DIH AAEI GV+I++VS + RR AK +NF +IYG+S F LA QL IPR EA Y Sbjct: 730 RDGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAY 789 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + +YF R+PG+ +Y+E T++ GYVETIFGRR+H EI S R ERAAINAP Sbjct: 790 MDKYFERYPGVMQYMEDTRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAP 849 Query: 892 IQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 +QG+AADI ++AM+ V + + E+ K+L+Q+HDELVFEV E ++ + ME Sbjct: 850 MQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMES 909 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A L+VPL +NW + Sbjct: 910 AA----ELKVPLVAEAGHGDNWDQ 929 >gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 923 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 354/983 (36%), Positives = 544/983 (55%), Gaps = 79/983 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRA++A P + DG P A+ G NML +L+ E H AV Sbjct: 6 ENPLILIDGSSYLYRAYHAAPNFTNS-DGEPTGAVYGVVNMLRSMLRQFSTE----HIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR++++P+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 IFDAKGKTFRDDMFPEYKANRPPMPDDLRGQIEPLHAVIKAMGLPLISISGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A ++G V I + DKD+ QLV L +T+ + +D V+ K+GI PE ++ Sbjct: 121 LATQASQQGMPVLISTGDKDMAQLVDQNITLINTMTDVVMDPAGVVDKFGIGPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LL G L+ + N I K + +L+ Sbjct: 181 ALMGDKVDNIPGVPGVGEKTAKALLTGIGGLDALYDNLDDIAPLGFRGSKTMAKKLLDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A +S KL ++ DV + + + L + L L+F + + + Sbjct: 241 EAAYMSYKLATIKLDVELDVKPDELRKGVPDTDALTELFGKLQFRRWLTEM--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + ++ + +A E S P + +K Sbjct: 292 --------LEGSDGRIVADE------------------------KSGNAPAE------KK 313 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I++ W+++L+ + +F TD +D + + ++ + +++ Sbjct: 314 AVAPTIDRSGYEIILDEAAFNVWLEQLKAAKAFAFDTETDGLDYMTANVVGVSFA-IEEG 372 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L+ LK E+ + KIG N+K+D ++ Sbjct: 373 KAAYVPVAHDYLDAPAQLDRDW---------VLAQLKPLLEDPNQAKIGQNLKFDASIVA 423 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RYGI M+G D ML SYV +S HD+ S+A ++L + + +EI K + ++I Sbjct: 424 RYGIEMQGIVFDTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEIAGKGKKQLTFNQI 483 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 +Q +A E++++ L+L L PK+ EKL HV+E ++ P++ V+S+ME TG+ +D Sbjct: 484 DLAQAGPYAAEDADITLRLHNALYPKVEADEKLKHVFETIEMPLVPVLSRMERTGVYVDS 543 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 LL S EI+ L LE+ ++++ ++FNLSSPKQL ILF K+ P KT +G T Sbjct: 544 MLLGAQSTEIAARLDELEKKAFEIADQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPST 603 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP +N T RVHT Y A T TGR Sbjct: 604 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGR 662 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AF++ K+++ DYSQIELRI+AH++ L F Sbjct: 663 LSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFR 722 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH AAEI G++IE+VS + RR AK INF +IYG+S F LA QL + R+EA DY+ Sbjct: 723 HGKDIHAATAAEILGLDIEQVSSEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQDYM 782 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E T+N + GYVET+FGRR++ +I S R ERAAINAP+ Sbjct: 783 NVYFERYPGVLEYMESTRNTASEKGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPM 842 Query: 893 QGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI + AMI+V ++ + ++L+Q+HDELVFEV E + + + + ME+A Sbjct: 843 QGTAADIIKLAMIAVDNWVQQQPQDEVRLLMQVHDELVFEVKESALESVTAEVKALMEQA 902 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL + +NW + Sbjct: 903 A----TLDVPLIADAGFGDNWDQ 921 >gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301] gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301] Length = 928 Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust. Identities = 370/982 (37%), Positives = 544/982 (55%), Gaps = 75/982 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R P AI G NML +L K+ + + A +FD Sbjct: 4 LLLVDGSSYLYRAFHAMPDL-RNSQNEPTGAIQGVLNMLRRL----HKDYPSDYSACVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++IY +YKANR +P+ L Q+ + A +A G P I G EADD+I Sbjct: 59 AKGKTFRDDIYAEYKANRASMPDDLRLQIEPLHEAIKAMGWPLIVESGVEADDVIGALAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMV 180 AE+EG I + DKD+ QLV+ + +T+++ + +DI V K+GIPP MV Sbjct: 119 QAEREGIRTIISTGDKDISQLVNEHITVVNTMRDAFRRTDDVLDIAGVENKFGIPPSLMV 178 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L GD+ DN+PG+ +G KTA L+EYG+L+NI+ NA +I K EN+ Sbjct: 179 DYLVLIGDTSDNVPGVEKVGPKTAVKWLKEYGSLDNIVANADKIT-GKVGENLRAALGWL 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +R+L+ +R DV I L L + + +L EF + D Sbjct: 238 PTARELITIRCDVGIQENLSDLSPQTIDKAKLAELFDRFEFKSWRRELENMQDN-----A 292 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 PV N T ++F TS+I QT ++Q Sbjct: 293 PVPTSGNVT-------------------AKFP-----TSQIQPTQTADMF------AVTQ 322 Query: 361 YPINND-SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 + N ++ I+ + + W+ KL+T F T ++D +K + + Sbjct: 323 FTANTSRNFETILTNQQLDTWLAKLQTAKLMCFDTETTSLDPMTAKIVGM---------- 372 Query: 420 TSFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 SF VE ++ L H D+ + E L+ +K EN K+G N KYD+ VL Sbjct: 373 -SFSVEAGSAAYLPLK-HDYFDAPEQLDFV-ETLAKIKPILENAAIKKVGQNFKYDQHVL 429 Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDK 532 +GI++ G D ML SYV +S ++ H + ++A++ L + + +E+ + ++ Sbjct: 430 ANHGIALNGIAHDTMLESYVFESHKT-HGMDALAERHLGIQTISFEEVAGKGAKQVTFNQ 488 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591 ++ E+A E++++ LQL + P++ + KL +Y +++ P ++ +E G+ ID Sbjct: 489 VTVEVASEYAAEDADITLQLHQAMYPQISTDAKLDFIYSQIEMPSSQILFTIERNGVLID 548 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +D+L S EI L++LE Y+L+G+ FNL SPKQL +ILF KL KT +G Sbjct: 549 RDMLNIQSNEIGAKLVALENQAYELAGQPFNLGSPKQLQEILFDKLGIKPTKKTPSGA-P 607 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 +T +D+ Q D+P+ K +LE+R L+K+KSTY D LP IN +T RVHT Y+ A +TG Sbjct: 608 STDEDVLQELALDHPLPKVLLEYRGLAKLKSTYTDKLPKMINAQTGRVHTSYNQAVAITG 667 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RLAS +PNLQNIP+++ G++IR AFI+P ++SADYSQIELRI+AH++K + F Sbjct: 668 RLASSDPNLQNIPVRSAEGRRIREAFIAPKGSHIVSADYSQIELRIMAHLSKDEGMLAAF 727 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 N+ DIHR AAEIFGV E V + RR+AK INF +IYG+S F LA L I R AA Y Sbjct: 728 ANNEDIHRHTAAEIFGVERENVDSEQRRYAKVINFGLIYGMSAFGLAQNLNIERGAAASY 787 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I+RYF R+PG+ EY++ T+ +Q GYVET FGRR+ EINSP + R ERAAINAP Sbjct: 788 IERYFARYPGVREYMQNTREIAKQKGYVETYFGRRLWVPEINSPNGTRRAGAERAAINAP 847 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG+AAD+ + AMI+V K L KL TK+++Q+HDELV EVP+ E+ Q + M+ Sbjct: 848 MQGTAADLIKLAMIAVDKWLRHEKLQTKLIMQVHDELVLEVPDNELELVKQKLPELMQNV 907 Query: 952 CLPKINLRVPLKVNIKVSNNWQ 973 L VPL + V +NW+ Sbjct: 908 A----KLDVPLLAEVGVGSNWE 925 >gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] Length = 944 Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust. Identities = 357/996 (35%), Positives = 562/996 (56%), Gaps = 79/996 (7%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + + L LVDGSS++YRA++A P L R +G P AI G NML KL R + A + Sbjct: 3 ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 57 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 A +FD TFR+E+YP YK +R +P+ L Q+ + A +A G P + + G EADD+I Sbjct: 58 ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVI 117 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T A +EG + + DKDL QLV+ L +T+ E +D V K+G+PPEK+V Sbjct: 118 GTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMTNETLDPAGVQAKFGVPPEKIVD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +L GD++DN+PG+P +G KTA L EYG+L+N++ A IK EN+ + Sbjct: 178 YLSLIGDTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVG-ENLRNTLDWLP 236 Query: 242 LSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 R+L+ ++TD ++ +P + L+ + RL F F + R AT Sbjct: 237 KGRELLTVKTDCDLSPDVPSFDALVDGGEDRARLADFFGRYGFKTWL-REATGES----- 290 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS---SLSDQTSKINSEQTPQKLFLERL 355 + T + G A R Q++ + Q S + E P ++ Sbjct: 291 -------LPDTRSVGAA------RKAATPVKQYAPEAAAQQQASLFDVETPPAEV----- 332 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 Y + ++ W++ L+ T ++D ++ + I++S Sbjct: 333 -----------KYETVTTEAQLESWMRLLDASELVCIDTETTSIDPMLAQLVGISLSVQP 381 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNT---LTKE-ILSYLKKFFENEHFLKIGHNIKY 471 + +I ++ H D +G + L++E +L+ ++ + E+E K+G ++KY Sbjct: 382 G--------QACYIPVA-HRGPDVSGLDAPAQLSREAVLARMRLWLEDETRGKVGQHLKY 432 Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSS 527 D V +GI++RG D ML SYVL S R+ H + ++A++ L + T +E+ + Sbjct: 433 DAHVFANHGIALRGITHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGAAQ 491 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586 I D+++ + E+A E++++ L+L L PK+ + KL +VYER++ P V+ +ME T Sbjct: 492 IGFDEVALDRATEYAAEDADITLRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERT 551 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G+ +D + L + SAE+ + LL+LE+ Y L+G+ FNL+SPKQ+G+I FT+LK P KT Sbjct: 552 GVLVDAERLARQSAELGQRLLALEQEAYALAGQPFNLNSPKQIGEIFFTQLKLPVVKKTA 611 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 +G T + L+++ D P+ K +L++R L+K+KSTY D LP +N +T RVHT Y A Sbjct: 612 SGAPSTDEEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQA 670 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 + +TGRLAS +PNLQNIP++T+ G++IR AF++P ++SADYSQIELRI+AH++ Sbjct: 671 TAVTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDG 730 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F D+HR AAE+FGV +V+ + RR+AK INF +IYG+S F LA+ L I R Sbjct: 731 LMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRD 790 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 A YI RYF R+PG+ Y+++T+ + GYVET+FGRR+ +IN R ERA Sbjct: 791 AAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERA 850 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLA--------TKMLLQIHDELVFEVPEEEIT 938 AINAP+QG+AAD+ + +M++V LE A +++++Q+HDELV EVP++E+ Sbjct: 851 AINAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLVMQVHDELVLEVPQDELA 910 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M L L VPL + V +NW+E Sbjct: 911 RVRERLPELMCGVAL----LSVPLVAEVGVGSNWEE 942 >gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990828|gb|AEF09811.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 928 Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust. Identities = 359/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + E L ++ L+ K EF + V + A Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P T + I+ S S+ + ++ E Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +Y I++ ++ W++KL+ +F TD++D + + ++ + ++ Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+ + L LK E+E K+G N+KYD+ VL Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++ +WL + T ++I K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VPL V + NW + Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926 >gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 928 Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust. Identities = 359/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P T + I+ S S+ + ++ E Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +Y I++ ++ W++KL+ +F TD++D + + ++ + ++ Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+ + L LK E+E K+G N+KYD+ VL Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++ +WL + T ++I K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLNAVAKRI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VPL V + NW + Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926 >gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329] Length = 930 Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust. Identities = 364/983 (37%), Positives = 544/983 (55%), Gaps = 72/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRAF+A P + + +P NA+ G NML +++ E IA V Sbjct: 6 ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASERIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E+Y +YKANRP +P+ L Q+ + +A G+P I + G EADD+I T Sbjct: 61 VFDAKGKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A ++G V I + DKD+ QLV L +T+ +D E V++K+GIPPE ++ Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++ DV + E L+ + N LI L F +N + + + Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLTFKSWLNEL---LEGGSG 297 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +E V L + + + TI SQ+ ++ D+ S Sbjct: 298 TVEAVELAGSAQASSSSSHAEMETSAVTIDRSQYETILDEAS------------------ 339 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 W++KL+ +F TD++D + + ++ + +D+ Sbjct: 340 -------------------FNAWLEKLKAAELFAFDTETDSLDYMVANLVGLSFA-IDEG 379 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L LK E++ K+G N+KYD VL Sbjct: 380 IAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDASVLA 430 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ ++I K+ + ++I Sbjct: 431 RYGIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 490 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q +A E+++V L+L L + EKL VYE ++ P++ V+S++E TG+ ID Sbjct: 491 ELEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDD 550 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L S EI+ L LE+ Y+++ ++FN++SPKQL ILF K+ P KT +G T Sbjct: 551 MKLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGAPST 610 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 611 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 669 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L F Sbjct: 670 LSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFR 729 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH AAEI GV+I++VS + RR AK +NF +IYG+S F LA QL IPR EA Y+ Sbjct: 730 DGKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 789 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 +YF R+PG+ +Y+E T++ GYVETIFGRR+H EI S R ERAAINAP+ Sbjct: 790 DKYFERYPGVMQYMEDTRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 849 Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + + E+ K+L+Q+HDELVFEV E ++ + ME A Sbjct: 850 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESA 909 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L+VPL +NW + Sbjct: 910 A----ELKVPLVAEAGHGDNWDQ 928 >gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] Length = 957 Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust. Identities = 366/999 (36%), Positives = 557/999 (55%), Gaps = 77/999 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ K +G P A+ G NML L+ SH AV Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLIAQVE----PSHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A GIP I I+G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEQYKSHRPPMPDNLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +G V I + DKD+ QLV+ L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LAVQAANDGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYA 237 AL GD DNIPG+ G+G KTA LLQ G+L+ I N ++ R + Sbjct: 181 ALQGDVSDNIPGVKGVGGKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLVPKLEAEK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS L ++TDV + + E L+++ L+ EF + +N V + Sbjct: 241 EAADLSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEVMNDSN---- 296 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 PV T+N I + + + S + + +EQT K+ ++R Sbjct: 297 ---PV------TQNSAEKI-----------PNNYQATSSVSQAVETEQTFAKVDIDR--- 333 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413 Y + + +Q W++K+ + TD++D+ + + I+ Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQAKLVAVDTETDSLDSMSANLVGISFGLANGE 385 Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLT-KEILSYLKKFFENEH 461 L K+ + + + DL ++ T KN L ++ LK EN Sbjct: 386 ACYIPLTHKEQVTLEPQQS--DLFAEPTEAETITSFELAKNQLNLTACVTELKPLLENAD 443 Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR-- 517 KIG NIKYD + +G+ + G D ML SY L+S GR H++ +A+++L + Sbjct: 444 VKKIGQNIKYDLTIFANHGVQVEGVAFDTMLESYTLNSTGR--HNMDELAERYLGHKTIE 501 Query: 518 -KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKP 575 +EI K+ + DKI+ ++A E+++V ++L +L P+L L+ ++ ++ P Sbjct: 502 FEEIAGKGKNQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPELDKAPTLVKLFNEIEMP 561 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 +++V+S++E G+ I+ + L SAEI + L LE+ ++ +GE FNL+S KQL +ILFT Sbjct: 562 LVEVLSRIERNGVLIEPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEILFT 621 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 KL P KT G T + L+++ + + K ++E R LSK+KSTY D LP IN++ Sbjct: 622 KLGLPVLKKTPKGAPSTNEEVLDELAGRGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQK 681 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T RVHT Y A T TGRL+S +PNLQNIPI+ + G++IR+AFI+ K+++ADYSQIEL Sbjct: 682 TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFITNKGYKIVAADYSQIEL 741 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH+A + F DIHR AAEIFG+ +++V+ + RR AK INF +IYG+S F Sbjct: 742 RIMAHLANDEGMIIAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF 801 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 L+ QL I R++A Y++RYF R+P + +++ + + GYVET+FGRR++ EI S Sbjct: 802 GLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSS 861 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + R ER AINAP+QG+AADI + AMI + K++ + KM++Q+HDELVFEV EE Sbjct: 862 NAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEE 920 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + SQ+I MEKA I L+VPL + V +NW E Sbjct: 921 RVEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955 >gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 928 Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust. Identities = 359/982 (36%), Positives = 553/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + E L ++ L+ K EF + V + A Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P T + I+ S S+ + ++ E Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +Y I++ ++ W++KL+ +F TD++D + + ++ + ++ Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKSPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+ + L LK E+E K+G N+KYD+ VL Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++ +WL + T ++I K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VPL V + NW + Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926 >gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 928 Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust. Identities = 359/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P T + I+ S S+ + ++ E Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +Y I++ ++ W++KL+ +F TD++D + + ++ + ++ Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+ + L LK E+E K+G N+KYD+ VL Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++ +WL + T ++I K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VPL V + NW + Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926 >gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4] gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4] Length = 892 Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust. Identities = 354/980 (36%), Positives = 551/980 (56%), Gaps = 97/980 (9%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M ++ ++L+DGSS+IYRA+YA LS G P NA+ GF ML K++ KE H Sbjct: 2 MSEKPTIYLIDGSSYIYRAYYAIRHLSSPK-GFPTNALYGFIQMLLKVI----KEKKPDH 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AVIFD TFRNEIY DYKANR +P+ L Q+ ++ A +AF IPA+E+ GFEADDI Sbjct: 57 LAVIFDAGRQTFRNEIYADYKANRAAMPDDLRQQIEPIKEAVRAFNIPALELAGFEADDI 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T E++G A +++ DKDLMQ+VS L DT+K++ V++++G+ E+++ Sbjct: 117 IGTIARDCEEKGMAAVVVTGDKDLMQIVSDNVTLLDTMKDKVSGPAEVVERFGVGSERVI 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + L GDS DNIPG+PGIG KTA L+ ++G+L+ +L A+ +K K E + E+AE A Sbjct: 177 DILGLAGDSSDNIPGVPGIGEKTAIKLVNDFGSLDELLARANEVKGKTG-ERLQEFAEQA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 RLSR+L + DC+ P +A +YD AA+ + Sbjct: 236 RLSRRLATI----------------DCHVP-----------------LAWSYDDFAASPQ 262 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 +N+ +A K F++L ++ SE T Sbjct: 263 ---------DNRRLA--------ELFKEYGFTTL---MKELTSEAT-------------- 288 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 ++ + Y ++++ D V++L + + + + T +++ ++ + I+ S + Sbjct: 289 --LSAEDYRTVLSSDDFTALVRQLTAVRAFAVDLETTSLNPLEAEIVGISFSFREH---- 342 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 E +I + + + L+++ +L LK + KIG NIKYD VL R Sbjct: 343 ----EAYYIPVG---HRYPGAPHQLSRDDVLGALKPLLLDPEKHKIGQNIKYDYQVLRRA 395 Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD 535 GI M+G + D ML SY+L+ R+S + S+A ++L + + E+ K ++ Sbjct: 396 GIDMQGIWCDTMLASYLLNPTRTSQGLDSLAVEFLDHRMISYAEVAGKGKEQKNFAQVEV 455 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + ++ E+++ L L P+L + ++ L+ P++ ++++ME+ G+++D LL Sbjct: 456 EKASVYSCEDADATYLLHKLFLPRLAESGMERLFFELEMPLVKILAEMELYGVKLDLPLL 515 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ-WKTTA 654 +++S L LE I+ L+G +FN++SPKQLG++LF +L+ G KTKT W T Sbjct: 516 QRLSDGFGGQLADLEREIFALAGGEFNVNSPKQLGEVLFERLQLQVGKKTKTKTGWSTNV 575 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 +LE++ G++ I + IL++R LSK+KSTY D+LP ++ + RVHT Y+ A T TGRL+ Sbjct: 576 DELERL-AGEHEIARLILQYRSLSKLKSTYTDALPKLVDAASGRVHTSYNQAVTNTGRLS 634 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S EPNLQNIPI+++ G+ IR AFI+ L+SADYSQIELR+LAH++ F Sbjct: 635 SSEPNLQNIPIRSEEGRSIRHAFIAAEGCLLLSADYSQIELRVLAHLSADRVFCDAFARD 694 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH AAE+FG+ + V+ +MRR AKTINF +IYG F LA +L + A ++I Sbjct: 695 EDIHTRTAAEVFGLFPQMVTQEMRRQAKTINFGVIYGQGAFSLARELGVSTKVAKEFIDN 754 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF R G +++ NGYV TI GRR+ +I S +IR +R A+N PIQG Sbjct: 755 YFARHAGARTFLDGCVREAEDNGYVTTILGRRLPIPDIKSSNGNIRAFAQRNAVNYPIQG 814 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 SAADI ++AM+ V +E + +++++Q+HDELVFEVPEEE ++ H ME A Sbjct: 815 SAADIIKQAMVRVVDRMEREGMKSRLIMQVHDELVFEVPEEEKLAMEMLVKHEMEHA--- 871 Query: 955 KINLRVPLKVNIKVSNNWQE 974 + LRVPL+V++ NW E Sbjct: 872 -VTLRVPLRVDMNFGRNWSE 890 >gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] Length = 944 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 356/996 (35%), Positives = 561/996 (56%), Gaps = 79/996 (7%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + + L LVDGSS++YRA++A P L R +G P AI G NML KL R + A + Sbjct: 3 ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 57 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 A +FD TFR+E+YP YK +R +P+ L Q+ + A +A G P + + G EADD+I Sbjct: 58 ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVI 117 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T A +EG + + DKDL QLV+ L +T+ E +D V K+G+PPEK+V Sbjct: 118 GTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQAKFGVPPEKIVD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +L GD++DN+PG+P +G KTA L EYG+L+N++ A IK EN+ + Sbjct: 178 YLSLIGDTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVG-ENLRSTLDWLP 236 Query: 242 LSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 R+L+ ++TD ++ +P + L+ + RL F F + R AT Sbjct: 237 KGRELLTVKTDCDLSPDVPSFDALVDGGEDRARLADFFGRYGFKTWL-REATGES----- 290 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS---SLSDQTSKINSEQTPQKLFLERL 355 + T + G A R Q++ + Q S + E P ++ Sbjct: 291 -------LPDTRSVGAA------RKAATPVKQYAPEAAAQQQASLFDVETPPAEV----- 332 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 Y + ++ W+Q L+ T ++D ++ + I++S Sbjct: 333 -----------KYETVTTEAQLESWMQLLDASELVCIDTETTSIDPMLAQLVGISLSVQP 381 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNT---LTKE-ILSYLKKFFENEHFLKIGHNIKY 471 + +I ++ H D +G + L++E +L+ ++ + E+E K+G ++KY Sbjct: 382 G--------QACYIPVA-HRGPDVSGLDAPAQLSREAVLARMRLWLEDETRGKVGQHLKY 432 Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSS 527 D V +GI++RG D ML SYVL S R+ H + ++A++ L + T +E+ + Sbjct: 433 DAHVFANHGIALRGITHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGAAQ 491 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586 I D+++ + E+A E++++ L+L L PK+ + KL +VYER++ P V+ +ME Sbjct: 492 IGFDEVALDRATEYAAEDADITLRLHRALYPKVAEDDKLRYVYERIEMPTSIVLQKMERN 551 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G+ +D + L + SAE+ + LL+LE+ Y L+G+ FNL+SPKQ+G+I FT+LK P KT Sbjct: 552 GVLVDAERLARQSAELGQRLLALEQEAYALAGQPFNLNSPKQIGEIFFTQLKLPVVKKTA 611 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 +G T + L+++ D P+ K +L++R L+K+KSTY D LP +N +T RVHT Y A Sbjct: 612 SGAPSTDEEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQA 670 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 + +TGRLAS +PNLQNIP++T+ G++IR AF++P ++SADYSQIELRI+AH++ Sbjct: 671 TAVTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDG 730 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F D+HR AAE+FGV +V+ + RR+AK INF +IYG+S F LA+ L I R Sbjct: 731 LMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRD 790 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 A YI RYF R+PG+ Y+++T+ + GYVET+FGRR+ +IN R ERA Sbjct: 791 AAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERA 850 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLA--------TKMLLQIHDELVFEVPEEEIT 938 AINAP+QG+AAD+ + +M++V LE A +++++Q+HDELV EVP++E+ Sbjct: 851 AINAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLVMQVHDELVLEVPQDELA 910 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M +L VPL + V +NW+E Sbjct: 911 RVRERLPELMCGVA----SLSVPLVAEVGVGSNWEE 942 >gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6] gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6] Length = 934 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 354/983 (36%), Positives = 533/983 (54%), Gaps = 71/983 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R DG P AI G ML KLL R + A H A +FD Sbjct: 10 LLLVDGSSYLYRAYHAMPDL-RGPDGQPTGAIHGLVAML-KLL---RSQIGAEHAACVFD 64 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ YP YKA RP +P+ L Q+ + + G P +E+ G EADD+I T Sbjct: 65 AKGPTFRDDWYPLYKAQRPPMPDDLRLQIEPIHEVVRLLGWPVLEVPGIEADDVIGTLAQ 124 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +AEK G V I + DKDL QLV+ L +T+ E +DIE V K+G+PP+++V L Sbjct: 125 LAEKSGHRVVISTGDKDLAQLVTEHVTLINTMSRESLDIEGVKAKFGVPPDRIVDYLTLM 184 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ +G KTAA + E+G+L+ ++ A IK EN+ + +RKL Sbjct: 185 GDTVDNVPGVEKVGPKTAAKWIAEHGSLDGVVAAAGSIKGVAG-ENLRRALDWLPTARKL 243 Query: 247 VMLRTD------VPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 V ++TD VP LE L L + + L +F F Sbjct: 244 VTVKTDCDLSGHVPAWPALEALALREVDPDGLRAFYMRNGFRTWTRE------------- 290 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 +E + I ++ +L D Q Sbjct: 291 ---------------LEAQAPSAPVIASAAAPALDDMA------QASGNGDAPAQAPAPA 329 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 Y I T+ + W+ +L+ + TD++D ++ I I Sbjct: 330 ADGAAGRYETIFTTEQLDAWIARLQAAPLVAIDTETDSLDPMRARIIGI----------- 378 Query: 421 SFKVETIFIDLSVHTSQDSTGK--NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 SF V+ + V D G E+L+ L+ + E+ K+G NIKYD V Sbjct: 379 SFAVQPLEAAY-VPVGHDYPGAPDQLPLDEVLARLRPWLEDAGTRKVGQNIKYDSHVFAN 437 Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 +G+++RG+ D ML SYVL++ H +AS+A + L + +++ IP ++ Sbjct: 438 HGVTVRGYAHDTMLESYVLEA-HKPHGLASLADRHLGRSGINYEDLCGKGAGQIPFSHVA 496 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 Q ++ E+S + LQ+ L P+L E +L +YE ++ P +V+ ++E G+ ID Sbjct: 497 VDQASTYSGEDSEMTLQVHQTLWPQLEAEPRLRELYETIEMPSAEVLVRIERNGVLIDAG 556 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 +L + S ++++ + +LE+ + ++G+ FN+SSPKQ+G+ILFTKL P KT +G T Sbjct: 557 VLARQSHQLAQRMHTLEQEAHAIAGQPFNMSSPKQIGEILFTKLGLPVKKKTASGAPSTD 616 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + L+++ D P+ ILE R L+K+K TY D LP +N T RVHT Y+ A +TGRL Sbjct: 617 EEVLQEL-AADYPLPARILEHRSLAKLKGTYTDKLPLMVNPSTGRVHTNYAQAVAITGRL 675 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIPI+T G+++R AF++ P KL+SADYSQIELR++AHI+ L + F + Sbjct: 676 SSNDPNLQNIPIRTAEGRRVREAFVAAPGHKLVSADYSQIELRLMAHISGDANLLKAFAD 735 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 +D+HR AAE+F + V+ + RR+AKTINF +IYG+ F LA L I + A DYI+ Sbjct: 736 GMDVHRATAAEVFNIAAADVTSEQRRYAKTINFGLIYGMGAFGLAASLGIEQKAARDYIE 795 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 RYF R+P + Y+++TK Q G+VET+FGRRI EI + ER AINAP+Q Sbjct: 796 RYFARYPDVKRYMDETKAGAAQLGHVETLFGRRIVLPEIKGGNGPRKAAAERQAINAPMQ 855 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AAD+ + AMI+V K+++D A+KM++Q+HDELV EVPE E+ A + + M Sbjct: 856 GTAADLIKLAMIAVQKAIDDEGRASKMIMQVHDELVLEVPEAELGWAREALPRLMAGVA- 914 Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976 L+VPL + NW+E + Sbjct: 915 ---QLKVPLVAEVGEGANWEEAH 934 >gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] Length = 937 Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust. Identities = 367/987 (37%), Positives = 550/987 (55%), Gaps = 85/987 (8%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVD SS++YRA++A P L+ H P A+ G NML LL SH AV+ Sbjct: 7 NPLILVDASSYLYRAYHALPPLTNSHKE-PTGAMYGVLNMLRSLLSQYHP----SHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E+Y YK++RP +P+ L Q+ PL R+ +A G+P + + GFEADD+I T Sbjct: 62 FDAKGKTFRDELYVQYKSHRPPMPDDLASQIEPLYRM-VRAMGLPLLVVAGFEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G +V I + DKD+ QLV+ L +T+ + + V K+G+PPE M+ Sbjct: 121 LAQQAEKAGRSVVISTGDKDMAQLVTTNITLINTMNNTVLGSQEVRDKYGVPPELMIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA L+Q G L+ + N +I K + ++ Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALIQGLGGLDCLFSNLEKIATLTFRGAKTFAAKLQQHK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + I + L + + +L EF + + + + D Sbjct: 241 ELAYLSYQLATIKTDVKLDIAHDKLNIPPPDIDQLHQLFSRYEFKRWLAELNSP-DWPMG 299 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 P T ID + T +++FS Sbjct: 300 KKRPA---------------TSID-EPTAPSARFS------------------------- 318 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 D+Y I++ + W+++L +F TD +D ++ I + Sbjct: 319 -------QDNYQIILDEDSLSHWIEQLNQADLFAFDTETDGLDIINANLIGL-------- 363 Query: 418 DDTSFKV---ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 SF + E ++ L+ H D+ + T +L LK EN K+G N+K+DK Sbjct: 364 ---SFAITPGEAAYLPLA-HDYSDAPIQLDRTL-VLDKLKPLLENPQKQKVGQNLKFDKS 418 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 +L R GI ++G D ML SY+L++ HD+ S++Q++L + T +EI KS + Sbjct: 419 ILARCGIVLQGIAFDTMLESYILNTVAGRHDMDSLSQRYLQHKTITFEEIAGKGKSQLTF 478 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQ 589 ++I+ Q +A E++++ L+L L P+L K L ++ ++ P++ V+S++E TG+ Sbjct: 479 NQIALEQAAPYAAEDADITLRLHHCLWPQLQQSKALSWIFTHIEMPLLSVLSRIESTGVL 538 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID+ +L Q S E++ L LEE + L+ E FNL+SPKQL IL+ K + P KT G Sbjct: 539 IDRAVLAQHSQELTTRLTELEEQAHLLAEEPFNLASPKQLQTILYEKQQLPVLKKTPKGA 598 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + L ++ D P+ K +LE+R L+K+K+TY D LP+ IN + RVHT Y A T+ Sbjct: 599 PSTDEEVLAELAL-DYPLAKVLLEYRGLAKLKTTYTDKLPSMINPTSGRVHTSYHQAVTV 657 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S EPNLQNIPI+++ G++IR+AFI+PP ++I+ADYSQIELRI+AH+++ + L + Sbjct: 658 TGRLSSREPNLQNIPIRSEEGRRIRQAFIAPPGYQIIAADYSQIELRIMAHLSQDSGLIK 717 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIHR AAE+F V++E + + RR AK INF +IYG+S F LA QL I R EA Sbjct: 718 AFTADKDIHRATAAEVFNVSVETATDEQRRSAKAINFGLIYGMSAFGLARQLGIARVEAQ 777 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 YI YF R+PG+ Y+E + GYV T+ GRR++ +IN+ + R ER AIN Sbjct: 778 HYIDLYFARYPGVANYMEAIRKQAATQGYVTTLSGRRLYLPDINASSAMRRKAAEREAIN 837 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AADI + AMI + L+ H+ +M++Q+HDELVFEV E + A + I H ME Sbjct: 838 APMQGTAADIIKSAMIEIDAWLQ-HQPLVRMIMQVHDELVFEVHESVVQGAVEKIRHLME 896 Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976 + + L VPL VNI V NW + + Sbjct: 897 QTTEKSMPLTVPLCVNIGVGANWDQAH 923 >gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] Length = 949 Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust. Identities = 362/988 (36%), Positives = 565/988 (57%), Gaps = 80/988 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN LVDGSS++YRA++A P L+ G P A+ G NML L+ + SH AV Sbjct: 23 ENPFILVDGSSYLYRAYHAFPPLTNSQ-GEPTGAMYGVLNMLRSLIIQYK----PSHVAV 77 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E+Y +YK+NRP +P+ L Q+ + QA G+P + I G EADD+I T Sbjct: 78 VFDAKGKTFRDELYEEYKSNRPPMPDDLREQIAPLHEMVQAMGLPLLSISGVEADDVIGT 137 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +G V I + DKD+ QLV+P L +T+ + + V +K+G+PPE ++ Sbjct: 138 LALKAAADGRDVLISTGDKDMAQLVTPKITLINTMTNVILGPDEVKEKYGVPPELIIDFL 197 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILINASRIKQKKRRENILEY 236 AL GDS DNIPG+PG+G KTA LLQ Y L+NI + R K + E+ Sbjct: 198 ALMGDSSDNIPGVPGVGEKTALGLLQGLGSLDDIYQQLDNIATLSFR-GAKTLGAKMAEH 256 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + A+LS KL ++TDV + + L++ + N +L+ EF + I+ + Sbjct: 257 EKVAKLSYKLATIKTDVELDKTFDDLVVSEPNLEQLLEMFTRYEFKRWISDL-------- 308 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 +N G + + TS+ + ++ N Sbjct: 309 -------------QNGGWLAQRSTQKVAVPYTSEAVKSKEASASAN-------------- 341 Query: 357 KLSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +P I ++Y I+ + + +WV+ L+ + +F TD+++ ++ I + Sbjct: 342 ----FPVITQENYEAILTHESLARWVELLKKAPAFAFDTETDSLNNIDARLIGM------ 391 Query: 416 QKDDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 SF +E +I L H D+ + ++L+ LK E+++ LKIG N+K+D Sbjct: 392 -----SFAIEPGKAAYIPLR-HEYLDAP-EQLPVNDVLAALKPILEDKNILKIGQNLKFD 444 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528 + ++ GI + G D ML SYVL+S + HD+ ++A+K L++ T +EI K + Sbjct: 445 RGIMENEGIELNGIHFDTMLESYVLNSVSNRHDMDTLAEKHLNHKTTTFEEIAGKGKGQL 504 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITG 587 ++I Q +A E++++ L L L P++ +E L HVY ++ P++ V+S+ME G Sbjct: 505 TFNQIEVEQATLYAAEDADITLLLHQALYPQIEAIEPLKHVYRDIEMPLVPVLSRMERKG 564 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + ID +L S EI++ L +E+ + L+G++FNLSSPKQL +ILF KL+ P KT Sbjct: 565 VLIDAQVLAVQSQEITQRLAEIEKETFALAGQEFNLSSPKQLQEILFDKLQLPVIKKTPK 624 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + LE++ + + + ILE R L+K+KSTY D LP +N +T+RVHT Y A Sbjct: 625 GAPSTNEEVLEEL-AHSHELPRLILEHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAV 683 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIP++ + G++IR+AFI+ K+++ADYSQIELRI+AH+++ L Sbjct: 684 TATGRLSSRDPNLQNIPVRNEEGRRIRQAFIAREGFKIVAADYSQIELRIMAHLSQDKGL 743 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F DIHR A+E+FG+ +E+V+ + RR AK INF +IYG+S F L+ Q+ + R E Sbjct: 744 LDAFAQGKDIHRATASEVFGIPLEEVTSEQRRSAKAINFGLIYGMSAFGLSQQIGVERRE 803 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A Y+ YF R+PG+ +Y+E+T+ + GYVET+ GRR++ EINS + R +ER A Sbjct: 804 AQRYMDLYFERYPGVLDYMERTRKQASEQGYVETLEGRRLYLPEINSKNAIRRKASEREA 863 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVH 946 INAP+QG+AADI ++AMI+V + + A M++Q+HDELVFEV E + A+ I++H Sbjct: 864 INAPMQGTAADIIKKAMIAVDNWICNECPADVHMIMQVHDELVFEVRESYLENAN-IMIH 922 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++ + L +PLKV + V NNW E Sbjct: 923 KLMESSM---ELAIPLKVEVGVGNNWDE 947 >gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 928 Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust. Identities = 356/982 (36%), Positives = 557/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAAKLAQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + E L ++ L+ K EF + V Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADV--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 E + +K ++ ++ +T I+ ++P + Sbjct: 292 ---------------------ESGKWLQVKGAKPAAKPQETVVID--ESPSE-------- 320 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ ++Y I++ ++ W++KL+ +F TD++D + + ++ + ++ Sbjct: 321 -PAAALSYENYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+ + L LK E+E K+G N+KYD+ VL Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++ +WL + T ++I K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN ++ RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKSGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VPL V + NW + Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926 >gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046] gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046] Length = 921 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 358/975 (36%), Positives = 557/975 (57%), Gaps = 70/975 (7%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 LVDGS F++RAF+A P L+ GL NAI G + + KL++ ++ +H AVIFD P Sbjct: 6 LVDGSYFLFRAFHALPPLTTS-TGLHTNAIRGAISAIQKLMRRTQP----THMAVIFDTP 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR+ + P YK +RP +PE L Q+P + +A GIP + G EADDII T A Sbjct: 61 EPTFRHVLSPIYKGDRPSMPEELSEQIPYLHALIRALGIPLYMLPGAEADDIIGTLAKRA 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 E G V I + DKD+ QLV+ L D+ K++ +D+ V +K+G+ P +++ L GD Sbjct: 121 EAAGQQVLISTGDKDMAQLVTDKVTLEDSFKDKPMDVNGVFEKFGVWPNQIIDYLTLMGD 180 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248 + D I G+PG+G KTAA LL EYG++ IL N +IK K +NI E+A+ L +L Sbjct: 181 ASDGIMGVPGVGAKTAAKLLTEYGSIGGILENVDKIK-GKVGQNIKEHADGIALDHQLAS 239 Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308 + D+ + + L L+D N L S LEF + + + + ++A + I Sbjct: 240 IVCDLETGLTFDDLKLQDPNTEALRSLYTELEFRQQLQSLDHPNNPNSATYKQATQHIAK 299 Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368 + I TE D ++ SS+ DQ + N Y Sbjct: 300 SAQSETVINTE---DQAVQ----SSVDDQLGQAN-------------------------Y 327 Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428 +++ + Q ++L T +F T ++D ++ + +++ D +D + Sbjct: 328 HTVLSAEQWTQLFKRLSTEKRFAFDTETTSLDYRVAQIVGFSVA-FDAQD-------AYY 379 Query: 429 IDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-F 486 + L+ H +++ + L +E IL+ +K E+E KIGH++KYD VL +GI ++G + Sbjct: 380 VPLA-HDYENAPAQ--LDREQILAQIKPILEDESVQKIGHHLKYDAHVLENHGIELKGWY 436 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543 D ML SYVL++ + H + +++ +LS+ T +++ ++I +A Sbjct: 437 FDTMLASYVLNAVATRHGMDDVSRLYLSHLTTTFEQVAGKGAKQKTFNQIEIETAAHYAA 496 Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E+++V +L+ +L KL +L+++ ++ P+ V++ ME GI++D L Q+ E Sbjct: 497 EDAHVTYRLFEVLDAKLQKHPELVNILHNVEMPVARVLTIMEENGIELDLGFLDQLGIEF 556 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + + +LE I +L+G+ FN+SSPKQ+G+ILF KL G KT TGQ+ T+ LE+I Sbjct: 557 ANTMANLESQITELAGQSFNVSSPKQVGEILFDKLGLKGGKKTATGQYSTSESVLEKI-- 614 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D+PI + IL++R LSK+KSTY D L N T RVHT Y A T TGRL+S +PNLQN Sbjct: 615 -DHPITELILDYRGLSKLKSTYTDGLLKQANSDTHRVHTSYHQALTATGRLSSTDPNLQN 673 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++ ++G++IR+AFI+P + L++ADYSQIELR++AH ++ L F++ D+HR A Sbjct: 674 IPVREEIGRQIRKAFIAPQGRVLLAADYSQIELRLMAHFSQDEALVDAFKHGQDVHRRTA 733 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+ GV +E V+ RR AK +NF ++YG+S F L QL R E+ YI +YF R+PG+ Sbjct: 734 AEVLGVALEDVTSDQRRQAKAVNFGLLYGMSEFGLTRQLGFSREESRGYIAKYFQRYPGV 793 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y+E+T+ R+ G+VETI GRR++ +I + I+ ERAAINAP+QGSAADI + Sbjct: 794 LDYMERTRQIAREQGFVETILGRRLYTPDIMASNKMIKQAAERAAINAPLQGSAADIIKM 853 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPE---EEITTASQIIVHSMEKACLPKINLR 959 AMI+V + L K TKMLLQ+HDELVFEV E +E+ + ++ S+ + + Sbjct: 854 AMIAVDQMLP--KDQTKMLLQVHDELVFEVDESIADELASKLADVMQSV-------LQIS 904 Query: 960 VPLKVNIKVSNNWQE 974 VPL V + NW E Sbjct: 905 VPLLVEVGKGRNWDE 919 >gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366] gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366] Length = 939 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 376/990 (37%), Positives = 572/990 (57%), Gaps = 82/990 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LFL+DG + IYRA +A R G+ +A+ GF N L ++L +KE+ +H AV+F Sbjct: 4 LFLLDGMALIYRAHFALSKNPRFTSTGINTSAVMGFANTLMEVL---KKEN-PTHIAVVF 59 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A T R+ + YKA+R +PE L LP + + F IP I GFEADDII T Sbjct: 60 DTDAPTERHTDFEAYKAHREAMPEDLSAALPYIFKLIEGFRIPVITKDGFEADDIIGTLA 119 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP-EKMV 180 AEK+GF V ++ DKD QLVS +Y + E + ++ V+ KW I E+++ Sbjct: 120 KEAEKKGFQVFCMTPDKDFAQLVSDNIFIYKPARMGNEMEIMGVKEVLAKWEIERVEQVI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + L GD++DNIPGIPGIG KTA L+++YG++ENI+ N+ +K K+REN+ YAE Sbjct: 180 DILGLWGDAVDNIPGIPGIGEKTAKALIKQYGSVENIIANSHELK-GKQRENVETYAEQG 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAANI 299 +S+KL + +VP+ + L LE+ + L LEF + RV ++ A + Sbjct: 239 LISKKLATIILNVPVEFDEKALELEEPSRELLEPLFAELEFRTIGKRVFGEGFNRGATMV 298 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 ++ +T++ + +T + QT P+ LE + L+ Sbjct: 299 --------------VSQQTDLFGNVVSETISYVETVVQT-------VPETTELEETKPLN 337 Query: 360 QYPINNDSYT-KIVNTKDIQ-QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I N S+ ++ NT +++ + V L S SF T DA ++ + ++ S Sbjct: 338 T--IENTSHNYQLANTPELRRELVDLLLKQESISFDTETTGTDANLAELVGLSFSIKPG- 394 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E +I + ++I+ + ENE+ +KIG NIKYD L+L Sbjct: 395 -------EGYYIPVPAEMEA--------AQQIVEEFRPVLENENIVKIGQNIKYDMLILK 439 Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL-------KSRKS--S 527 YGIS++G D ML Y++D + H++ +++ +L+Y+ I KS+ + Sbjct: 440 WYGISVKGRLFDTMLAHYLIDPD-TRHNMDVLSENYLNYSPISITTLIGPKGKSQGTMRD 498 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQME 584 +P++K+ D +A E++++ LQL + P +L EKL ++ P+I V++ +E Sbjct: 499 VPVEKVVD-----YAAEDADITLQLANVFEPLLKQLNAEKLAT---EVENPLIYVLADIE 550 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGA 643 G++ID D L S E+ ++ E+++YD G KFNL+SPKQLG++LF KL+ P Sbjct: 551 KEGVRIDMDTLINYSKELELDIRKFEQSVYDKCGIKFNLASPKQLGEVLFDKLQLDPKAK 610 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KTKTGQ++T +D+ + I+++IL++RQL K+KSTY D+LP +N +T RVHT + Sbjct: 611 KTKTGQYQT-GEDVLLALAHKSDIVQDILDFRQLQKLKSTYVDALPLLVNPKTGRVHTSF 669 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIA 762 + A TGRL+S PNLQNIPI+T+ G+++R+AFI L+SADYSQIELRI+A I+ Sbjct: 670 NQAVAATGRLSSNNPNLQNIPIRTERGREVRKAFIPRDENHILLSADYSQIELRIIADIS 729 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 K + F+N +DIH AA ++G+ IE+V+P RR+AK +NF IIYG S F L+ L Sbjct: 730 KEENMLDAFKNGIDIHTATAARVYGIAIEEVTPTQRRNAKAVNFGIIYGQSAFGLSQNLG 789 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IPR EAA+ I++YF ++PGI Y+ T NF R+NG+VETI GRR + +INS ++R Sbjct: 790 IPRKEAAEIIEQYFTQYPGIKRYMSDTMNFARENGFVETILGRRRYLRDINSANQTVRGF 849 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAPIQGSAAD+ + AMI++HK ++D L +KM +Q+HDELVF+V + E+ + Sbjct: 850 AERNAINAPIQGSAADMIKVAMINIHKDIQDQGLQSKMTMQVHDELVFDVLKSEVEAMKK 909 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 II H M+ A I VP++V I NW Sbjct: 910 IIAHRMKTA----IKTTVPIEVEIGEGENW 935 >gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922] gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922] Length = 941 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 375/999 (37%), Positives = 564/999 (56%), Gaps = 92/999 (9%) Query: 4 ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + LFL+D + I+R +YA P ++ K G +AI GF N L+ ++ R+E +H Sbjct: 5 DKRLFLLDAYALIFRGYYAFIKNPRINSK--GFNTSAIMGFLNSLFDVI---RREQ-PTH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+FD T R +P YKANR + PE + +P ++ A IP + QG+EADD+ Sbjct: 59 LAVVFDVGEATIRTVDFPQYKANREETPEAIREGVPYIQEILNALRIPVLYAQGYEADDV 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP- 175 I T AE+ G+ +++ DKD QLVS +Y E +E V +K+ I Sbjct: 119 IGTLAKKAEQRGYTTYMVTPDKDFAQLVSEHIKMYKPPAYGRGVEIWGVEEVKEKYQIED 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ L + GDS+DNIPGIPG+G KTA ++ YG+LE +L N ++K K++EN++E Sbjct: 179 PIQVIDLLGMMGDSVDNIPGIPGVGEKTAIKFIKTYGSLEGLLANTDQLK-GKQKENVIE 237 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E A LS+KL + TDVP+ E L + N ++ LEF +++ V Y+ D Sbjct: 238 NREQAILSKKLATIITDVPVEFDEEDLTVCPPNLEKVTDLFTELEFRRMLETVYRLYNVD 297 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 + I++DT + SQ + + N E T Q LF Sbjct: 298 P---------------------SRINQDTQNEISQ-------SIQKNKETTQQSLFDFTS 329 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQ----------KLETIGSASFKIITDTMDAFHSK 405 +++ P+N++ +T I NT Q V K++T+ S +F T ++D +K Sbjct: 330 EEVI-VPLNSN-FTNISNTDHFYQLVDTPVARRLLIDKMKTLDSFAFDTETTSLDPLEAK 387 Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465 + I+ S ++ F D K I+ + F N KI Sbjct: 388 LVGISFS-WEKGKGYYLPFPEDFDD---------------AKNIILEFAELFSNPAIEKI 431 Query: 466 GHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---- 520 GHNIKYD VL++YGI + G D M+ Y+L+ H++ +++ +L Y I Sbjct: 432 GHNIKYDLKVLYKYGIRIDGENFDTMIAHYLLNPDMR-HNLDVLSETYLGYKPVSIETLI 490 Query: 521 ---LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 K++K+ +D I + E+ E+S+V QL + P+L L ++ ++ P++ Sbjct: 491 GKKGKNQKNFREVDLIEQT---EYGTEDSDVTFQLKNIFEPELEKVSLTKLFRNIEMPLM 547 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 V++ MEI GI++D D L+Q+S + + + LE+ I+ +GE+FNL+SPKQLGDILF KL Sbjct: 548 KVLATMEIEGIRLDVDFLQQLSKKHQEKIKELEQKIFSEAGEEFNLNSPKQLGDILFDKL 607 Query: 638 KF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 K P KTKTGQ+ T + L ++ PIIKNIL +RQL K+KSTY D+LP +N T Sbjct: 608 KLEPKSKKTKTGQYSTGEEILSKL--AHYPIIKNILHYRQLQKLKSTYIDALPELVNPVT 665 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIEL 755 QRVHT ++ TGRL+S+ PNLQNIPI+T+ GQ+IR+AFI+ P K+ISADYSQIEL Sbjct: 666 QRVHTTFAQTVAATGRLSSVNPNLQNIPIRTEEGQQIRKAFIARNPEYKIISADYSQIEL 725 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 R++A +A+ + + F++ DIH AA+IFGV +++V+ + R AKT+NF IIYG+S F Sbjct: 726 RLIAQMAQDPVMVKAFQDGEDIHASTAAKIFGVALDEVTREQRSQAKTVNFGIIYGVSAF 785 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA Q + +EA I Y+ +P + +YI++ R+NG+VET+ RR + +INS Sbjct: 786 GLAQQTGLSNTEAKKLIDAYYETYPTLKKYIDQQIASARENGFVETLMRRRRYLKDINSR 845 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 +++R+ ER A+NAPIQGSAADI + AMI + K L D K ATKMLLQ+HDELVF+ P Sbjct: 846 NNTVRSHAERNAVNAPIQGSAADIVKLAMIQIQKEL-DKKFATKMLLQVHDELVFDAPIS 904 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+ S++I +ME I + VPL + V +NW E Sbjct: 905 EVEEVSKMIKTTMESV----IQMEVPLVAEVGVGDNWLE 939 >gi|332288906|ref|YP_004419758.1| DNA polymerase I [Gallibacterium anatis UMN179] gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179] Length = 925 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 364/984 (36%), Positives = 554/984 (56%), Gaps = 79/984 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 EN LVDGSS++YRA++A L + G P A+ G NML LL KE +H A Sbjct: 6 ENPFVLVDGSSYLYRAYHANFRLGLSNSAGEPTGAMYGVLNMLKSLL----KEVNPTHIA 61 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V+FD TFR+E++ YK++RP +PE L Q+ + +A G+P + ++G EADD+I Sbjct: 62 VVFDAKGKTFRDEMFEQYKSHRPPMPEDLRQQIQPLHQMIEALGLPLLIVEGVEADDVIG 121 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A G V I + DKD+ QLV L +T+ +D E VI+K+ +PPE ++ L Sbjct: 122 TLAKQASAAGREVLISTGDKDMAQLVDDKIMLINTMTNTLLDREGVIEKYEVPPELIIDL 181 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GDS DNIPG+P +G KTA LLQ G + +I ++ KK + +L Sbjct: 182 LALMGDSSDNIPGVPSVGNKTAIALLQGLGGIADIYSQLDKVTDLPIRGAKKLADKLLAG 241 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E A LS KL ++TDVP+ + E L L+ N +LI + EF + +N Sbjct: 242 KEDADLSYKLATIKTDVPLDVTFEQLTLQPENRDQLIEYYARYEFKRWLN---------- 291 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 E+ + T+ T+Q SS T K R Sbjct: 292 ----------------------ELLNENTVSTAQNSS------------TMVKATPSREI 317 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 + S ++ Y I+ + +QQW +KL + T++++ +K + ++ + L+ Sbjct: 318 QSSAIKVDRSRYQTILTEEQLQQWREKLSNASLFAIDTETNSLNYMQAKLVGLSFA-LEN 376 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + ++ ++D S K +L+ LK E+ + K+G N+KYD +L Sbjct: 377 GEAAYLPLQHHYLDCPQQLS---------WKTVLAALKTVLEDPNIKKVGQNLKYDLTIL 427 Query: 477 HRYGISMRGF-EDIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 R+G+ ++G D ML SY LDS GR H++ +A+++L + +++ K + D Sbjct: 428 ARHGVELQGVVYDTMLESYTLDSTGR--HNMDDLAKRFLHHDTIHFEDLAGKGKGQLTFD 485 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 +I + E+A E+++V +L +L P+L L+ ++ ++ P+ V+++ME G+ I Sbjct: 486 QIEIDKAAEYAAEDADVTFKLHQVLWPQLNQTPSLVKLFTEVELPLSQVLARMERNGVLI 545 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D DLL Q S EI+ L+ LE+ + L+G+ FNL+S KQL +ILF KL P KT G Sbjct: 546 DSDLLYQQSQEINARLIQLEQQAHQLAGQAFNLASTKQLQEILFGKLGLPVLKKTPKGAP 605 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + LE++ ++ + K ++E R SK+KSTY D LP I+ T RVHT Y A T+T Sbjct: 606 STNEEVLEEL-AYEHELPKLLVEHRGFSKLKSTYTDKLPQMIDPNTGRVHTSYHQAVTIT 664 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP +++ G+KIR+AFI+P K+++ADYSQIELRI+AH++ L Sbjct: 665 GRLSSSDPNLQNIPTRSEEGRKIRQAFIAPQGFKVVAADYSQIELRIMAHLSADAGLAYA 724 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F + LD+HR AAE+F V +E+V+ Q R AK INF +IYG+S F LA QL+IPR+EA Sbjct: 725 FSHGLDVHRSTAAEVFDVPLEQVTSQQRYRAKAINFGLIYGMSAFGLARQLQIPRNEAQT 784 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI RYFHR+PG+ +++ + +Q GYVET+ GRR++ E+ S R ER AINA Sbjct: 785 YIDRYFHRYPGVKQFMNDIQEKAKQQGYVETLLGRRLYLPELKSSNGMRRKAAERVAINA 844 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AADI ++AMI + + + D K +M++Q+HDELVFEV E+++ +II ME Sbjct: 845 PMQGTAADIIKKAMIDIDRFIAD-KNDIRMIMQVHDELVFEVKEDKVEYYEKIIKDMMEN 903 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A + L VPL V + +NW + Sbjct: 904 A----VKLSVPLIVEVNFGDNWDQ 923 >gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355] Length = 928 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 362/984 (36%), Positives = 547/984 (55%), Gaps = 76/984 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLL----VQYSPTHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRSQIEPLHEMVRAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK+G AV I + DKD+ QLV+P L +T+ + E V +K+G+PP ++ Sbjct: 121 LALEAEKKGHAVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVEQKYGVPPSLIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 A+ GDS DNIPG+PG+G KTA LLQ G +++I N ++ K + + Sbjct: 181 AMMGDSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLDKVADLSFRGAKTMAAKLEQNR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++TDV + P E L + + + L + EF + + Sbjct: 241 DVAFLSYQLATIKTDVELDQPCEALTVSEPDVNALQALFSRFEFKRWLT----------- 289 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + E K + Q +K N Q Q L E + Sbjct: 290 ---------DLQEGKWL----------------------QGTKSN-RQAQQVLTDEPVAS 317 Query: 358 LSQYPI-NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 + + + D Y I++ + + WV+KL+ +F + TD +D + + ++ + + Sbjct: 318 VEATSLLSADGYITILDQQTLDAWVEKLKNSEVFAFDLETDGLDTLTANIVGLSFA-VAP 376 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + V ++D +D+ +L+ LK E+ K+G N+KYD+ VL Sbjct: 377 GEAAYLPVAHDYLDAPEQLDRDA---------VLAQLKPLLEDPDASKVGQNLKYDRGVL 427 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 Y I + G + D ML SY+L+S HD+ S++ +WL++ T +EI K+ + ++ Sbjct: 428 KNYDIELAGIKYDTMLESYILNSVVGKHDMDSLSARWLNHKTITFEEIAGKGKNQLTFNQ 487 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQID 591 I+ Q +A E+++V LQL L + P+L E V+E+++ P++ V+S++E G+ ID Sbjct: 488 IALEQAAHYAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLID 547 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 Q +L Q S E++ L LE ++L+GE FNLSS KQL ILF K KT G Sbjct: 548 QAILAQHSKELTSRLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPS 607 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+ + L ++ D P+ K ILE R LSK+KSTY D LP IN + RVHT Y A T TG Sbjct: 608 TSEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATG 666 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP++ D G++IR+AF++ ++++ADYSQIELRI+AH+++ L F Sbjct: 667 RLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAF 726 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIHR A+E+FGV + KV+ + RR AK INF +IYG+S F L+ QL I EA Y Sbjct: 727 SQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKY 786 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF R+PG+ Y+E T+ NGYVET+ GRR+ +I S + R ERAAINAP Sbjct: 787 MDLYFERYPGVLRYMENTRQLAASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAP 846 Query: 892 IQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 +QG+AADI +RAMI+V L+ A +M++Q+HDELVFE+ E + AS+ I ME Sbjct: 847 MQGTAADIIKRAMIAVDDWLQKQTDDAVRMIMQVHDELVFEIKAEAVDEASKQIRALMEG 906 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 + + L VPL V + V +NW + Sbjct: 907 S----MALDVPLLVEVGVGDNWDQ 926 >gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] Length = 928 Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust. Identities = 360/980 (36%), Positives = 534/980 (54%), Gaps = 77/980 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS++YRAF+A P L+ G P A+ G NML L+ K+ S AV+FD Sbjct: 12 IVLVDGSSYLYRAFHALPPLTTSK-GNPTGAVKGVLNMLKSLI----KQYPQSPMAVVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++IY +YKA+RP +P+ L PQ+ + +A G+P + I+G EADD+I T Sbjct: 67 AKGKTFRDDIYAEYKAHRPPMPDDLRPQVEPLHDCIRALGLPLLCIEGVEADDVIGTLAR 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + G I + DKD+ QLV+ L +T+K E +D+ V +K+GIPP ++ AL Sbjct: 127 QATEAGRDAVISTGDKDMAQLVNAHITLVNTMKGETLDVAGVEEKFGIPPSLVIDFLALM 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRI-----KQKKRRENILEY-AET 239 GD +DNIPG+PG+G KTA LLQ G L+ I + R+ + K LE E Sbjct: 187 GDKVDNIPGVPGVGEKTALGLLQGMQGGLDTIYADLERVTTLSFRGAKTMPKKLEANREQ 246 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS +L ++TD + + L+ L + + L + LEF +N + D Sbjct: 247 AFLSYQLATIKTDCELPVGLDDLDIAHPDREALKTLYTELEFKNWLNELLEGRD------ 300 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 ++ G + + T++ +S +D Sbjct: 301 -------EGVDDVGSGDAVDAAQGPVASTAEATSRTDHV--------------------- 332 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 IV + W+ +L F + T +++ + + I +S LD + Sbjct: 333 -----------IVTREAFDAWLARLGEADIFCFDLETTSLNYMEADIVGIGLS-LDAGEA 380 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 V ++D + S +L+ LK +E+ KIG N+KYD VL RY Sbjct: 381 AYIPVAHRYLDAPEQLDRAS---------VLAALKPLWEDPAKAKIGQNLKYDISVLARY 431 Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISD 535 I + G ED ML SYVL++ + HD+ S+A K+L + + +EI + D+I+ Sbjct: 432 DIEVAGRLEDTMLASYVLNATATRHDMDSLALKYLGEKTISFEEIAGKGAKQLTFDQIAL 491 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 Q +A E+ ++ L+L LRP++ E +L V + ++ P++ V+S+ME G+ +D + Sbjct: 492 EQAAPYACEDVDITLRLHRELRPRVDGEGRLAAVLDDIELPLVPVLSRMERNGVALDAER 551 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L S E+ K L LE Y+L+G +FNL SPKQLG+ILF +LK P KT G T Sbjct: 552 LHAQSRELEKRLRELETRAYELAGREFNLGSPKQLGEILFDELKIPVIKKTPKGAPSTAE 611 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE++ D P+ K I+E R +K+KSTY D LP +N T+R+HT Y A T TGRL+ Sbjct: 612 AVLEELAL-DYPLPKVIIEHRGFAKLKSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLS 670 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIPI+T+ G+KIR+AF++ P ++++ADYSQIELRI+AH++ L F Sbjct: 671 SSDPNLQNIPIRTEEGRKIRQAFVARPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEG 730 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH AAE+FGV ++ VS + RR AK INF +IYG+S + L QL I R++A YI R Sbjct: 731 RDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQTYIDR 790 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF R+PG+ ++E+ + +GYVET+FGRR++ EIN+ + R ER AINAP+QG Sbjct: 791 YFDRYPGVARFMERIRAQAADDGYVETVFGRRLYLPEINAQNRTRRQAAERTAINAPMQG 850 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AADI + AMI V + L + M++Q+HDELVFEV E ++ + + ME A Sbjct: 851 TAADIIKLAMIDVDRWLREGDFDAWMVMQVHDELVFEVKEAQVDAFTDAVRQRMEGAA-- 908 Query: 955 KINLRVPLKVNIKVSNNWQE 974 L VPL V +NW E Sbjct: 909 --KLDVPLTVEANAGDNWDE 926 >gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320] gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320] Length = 932 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 364/991 (36%), Positives = 566/991 (57%), Gaps = 86/991 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN LVDGSS++YRA++A P L+ G P A+ G NML L+ + SH AV Sbjct: 6 ENPFILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLIIQYK----PSHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E+Y +YK+NRP +P+ L Q+ + QA G+P + I G EADD+I T Sbjct: 61 VFDAKGKTFRDELYEEYKSNRPPMPDDLREQIEPLHEMVQAMGLPLLSITGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +G V I + DKD+ QLV+P L +T+ + + V +K+G+PPE ++ Sbjct: 121 LALKAASDGRNVLISTGDKDMAQLVTPNITLINTMTNVILGPDEVKEKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G+LE+I +I K ++E+ Sbjct: 181 ALMGDSSDNIPGVPGVGEKTALGLLQGLGSLEDIYQQLDKIATLSFRGAKTLGAKMVEHE 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A+LS +L ++TDV + + L++ + N +L+ EF + I+ + Sbjct: 241 KVAKLSYQLATIKTDVALDKTFDDLVVNEPNLDKLLEMFTRYEFKRWISDL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +N G + + +++ ++ +Q + N Sbjct: 292 ------------QNGGWLAQRSSRKAPVPYSAEVATPKEQPAADN--------------- 324 Query: 358 LSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 +P I+ ++Y I+ + + +WV+ L+ + +F TD+++ ++ I + Sbjct: 325 ---FPVISQENYESILTHESLMRWVEVLKKAPAFAFDTETDSLNNIDARLIGL------- 374 Query: 417 KDDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 SF VE +I L H D+ + E+L+ LK E++ LKIG N+K+D+ Sbjct: 375 ----SFAVEPGKAAYIPLR-HDYLDAP-EQLPVDEVLTALKPILEDKTILKIGQNLKFDR 428 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 ++ GI + G + D ML SYVL+S S HD+ ++A+K L++ T +EI K + Sbjct: 429 GIMENEGIELNGIYFDTMLESYVLNSVSSRHDMDTLAEKHLNHKTTTFEEIAGKGKGQLT 488 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I Q +A E++++ L L L P++ + L HVY ++ P++ V+S+ME G+ Sbjct: 489 FNQIEVEQATLYAAEDADITLLLHQALYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGV 548 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ID +L S EI++ L +E+ + L+G++FNLSSPKQL +ILF KL P KT G Sbjct: 549 LIDAQVLAMQSQEITQRLAEIEKETFALAGQEFNLSSPKQLQEILFEKLNLPIIKKTPKG 608 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + LE + + + + ILE R L+K+KSTY D LP +N +T+RVHT Y A T Sbjct: 609 APSTNEEVLEAL-AHSHELPRLILEHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVT 667 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI+ K+++ADYSQIELRI+AH+++ L Sbjct: 668 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIARDGFKIVAADYSQIELRIMAHLSQDKGLL 727 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR A+E+FG+ +++V+ + RR AK INF +IYG+S F L+ Q+ + R EA Sbjct: 728 DAFAQGKDIHRATASEVFGIPLDEVTSEQRRSAKAINFGLIYGMSAFGLSQQIGVERKEA 787 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ +Y+E+T+ Q GYVET+ GRR++ EINS + R +ER AI Sbjct: 788 QRYMDLYFERYPGVLDYMERTRKQASQQGYVETLDGRRLYLPEINSKNAIRRKASEREAI 847 Query: 889 NAPIQGSAADITRRAMISV-----HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 NAP+QG+AADI ++AMI+V H+ +D M++Q+HDELVFEV E + A+ + Sbjct: 848 NAPMQGTAADIIKKAMIAVDNWICHECPDD----VHMIMQVHDELVFEVRESYLEKANAM 903 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I ME + + L +PLKV + V NNW E Sbjct: 904 IHKLMESS----MELAIPLKVEVGVGNNWDE 930 >gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 928 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 358/982 (36%), Positives = 552/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + E L ++ L+ K EF + V + A Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVESGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P T + I+ S S+ + ++ E Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +Y I++ ++ W++KL+ +F TD++D + + ++ + ++ Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+ + L LK E+E K+G N+KYD+ VL Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++ +WL + T ++I K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTREQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPT 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V ++ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWIQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VPL V + NW + Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926 >gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 957 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 367/999 (36%), Positives = 557/999 (55%), Gaps = 77/999 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ K +G P A+ G NML L+ SH AV Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A GIP I I+G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A G V I + DKD+ QLV+ L +T+ +D E VI K+GIPPE ++ Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+ G+G KTA LLQ G+L+ I N ++ K + Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS L ++TDV + + E L+++ L+ EF + +N V Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEVMN------- 293 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N PV T+N E +I + + + + + +EQT K+ ++R Sbjct: 294 NANPV------TQNS----EEKIPNN-------YQATASVPQAVETEQTFAKVEIDR--- 333 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413 Y + + +Q W++K+ + + TD +D+ + + I+ Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGISFGLANGD 385 Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFL 463 L K+ + + + + ++ +T K++ L+ LK EN Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---K 518 KIG NIKYD + +G+ + G D ML SY L+S GR H++ +A ++L + + Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIEFE 503 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKP 575 EI K+ + DKI+ ++A E+++V ++L +L P+L EK L+ ++ ++ P Sbjct: 504 EIAGKGKNQLTFDKIAIDIASQYAAEDADVTMKLHQVLSPEL--EKAPTLVKLFNEIEMP 561 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 +++V+S++E G+ ID + L SAEI + L LE+ ++ +GE FNL+S KQL +ILFT Sbjct: 562 LVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEILFT 621 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 KL P KT G T + L+++ + + K ++E R LSK+KSTY D LP IN + Sbjct: 622 KLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPK 681 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T RVHT Y A T TGRL+S +PNLQNIPI+ + G++IR+AFI+ K+++ADYSQIEL Sbjct: 682 TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIEL 741 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH+A + F DIHR AAEIFG+ +++V+ + RR AK INF +IYG+S F Sbjct: 742 RIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF 801 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 L+ QL I R++A Y++RYF R+P + +++ + + GYVET+FGRR++ EI S Sbjct: 802 GLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSS 861 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + R ER AINAP+QG+AADI + AMI + K++ + KM++Q+HDELVFEV EE Sbjct: 862 NAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEE 920 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I SQ+I MEKA I L+VPL + V +NW E Sbjct: 921 LIEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955 >gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] Length = 921 Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust. Identities = 354/983 (36%), Positives = 550/983 (55%), Gaps = 80/983 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDGSS++YRAF+A P L G P A+ G ML KL+ K+ + AV Sbjct: 5 EKPIILVDGSSYLYRAFHALPPLVTSS-GQPTGAVRGVAAMLRKLI----KDYDPQYMAV 59 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E++ +YK+ RP +P+ L Q+ + +A G+P I G EADD+I T Sbjct: 60 IFDAKGKTFRDEMFEEYKSQRPPMPDDLREQVTPLHDLIRAMGLPLIIEDGVEADDVIGT 119 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y I +G V I + DKD+ QLV+ L +T+ + DI+ V KK+G+ PE ++ Sbjct: 120 YARIFGSQGKPVLISTGDKDMAQLVTEQVTLINTMNDALYDIDGVKKKFGVGPELIIDFL 179 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G+LE I N ++ R + + + Sbjct: 180 ALMGDKVDNIPGVPGVGEKTALGLLQGLGSLETIYDNLDKVADLSFRGAKTLGKKLEDNK 239 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++ D ++ L L L+ + +L + ++LEF ++ + D A Sbjct: 240 EMAFLSYQLATIKLDCDVSDDLNELKLQTPDAEKLAEYYRSLEFKGWLSELLEGQDPAA- 298 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 E+ G +E E D ++ + Sbjct: 299 ------------EDAGKKVELEADSESVLS------------------------------ 316 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ + Y +++ + W+ L+ + T +++ ++ + ++++ Sbjct: 317 -----IDKEGYETVLDETALNAWIDALKNADVFALDTETTSLNYMQAELVGVSVAV---- 367 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + K I + + D K +L LK E+++ K+G N+KYD VL Sbjct: 368 --EAGKAAYIPFGHNYPGAPDQLDKQF----VLDALKPILEDDNLKKVGQNLKYDMSVLA 421 Query: 478 R-YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDK 532 GI++RG D ML SYVLDS + HD+ S+A K+L + + +EI + ++ Sbjct: 422 EDVGITLRGVAYDTMLESYVLDSVATRHDMDSLALKYLGRKTISFEEIAGKGAKQLTFNQ 481 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591 + + +A E+++V L+L L PKL E +L V+ ++ P++ V+S++E G +D Sbjct: 482 VGLHEASRYAAEDADVTLRLHQTLWPKLEKEGRLTEVFRDIELPLVTVLSRIERNGTYVD 541 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 LLK S ++K + L+E +++G++FNLSSPKQLG+IL+ KL+ P KT G Sbjct: 542 ATLLKHQSQFLAKRMAELQEKACEIAGQEFNLSSPKQLGEILYQKLEIPVIKKTPKGAPS 601 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T L+++ + P+ + I+++R ++K+K+TY D LP IN+RT RVHT Y A TG Sbjct: 602 TAEAVLQELAL-EYPLPQVIMDYRGVAKLKNTYTDKLPELINQRTGRVHTSYHQAVAATG 660 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP++++ G+KIR+AF++P +K+++ DYSQIELRI+AH++ L F Sbjct: 661 RLSSSDPNLQNIPVRSEEGRKIRQAFLAPKGRKIVACDYSQIELRIMAHLSDDKGLTDAF 720 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 E LDIHR AAE++G +++VS RR+AK INF +IYG+S F LA QL +PR EA +Y Sbjct: 721 EKGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIYGMSAFGLAKQLGLPRKEAQEY 780 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I YF R+PG+ +Y+ T+ NGYVET++GRR++ EI+S R ERAAINAP Sbjct: 781 IDLYFERYPGVKKYMADTRALAADNGYVETVYGRRLYLPEIHSKNGQRRQAAERAAINAP 840 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG+AADI ++AMI VH LE KM++Q+HDELVFEV E+++ + + ME A Sbjct: 841 MQGTAADIIKKAMIKVHDWLETTDFDAKMIMQVHDELVFEVAEDQVDDLVREVKARMESA 900 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L+VPL V+ + NW+E Sbjct: 901 A----ELKVPLIVDAGIGENWEE 919 >gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222] gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222] Length = 933 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 361/983 (36%), Positives = 540/983 (54%), Gaps = 69/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P D +P NA+ G NML +++ + IA V Sbjct: 6 DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LASQASAMGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G++E + N I K + + + Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLADNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S +L ++ DV + E L+ N LI L F +N + Sbjct: 241 ANADMSYELATIKLDVELEETPESLVKAQPNIDELIKLYGQLVFKSWLNELL-------- 292 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +G + E D ++ + S T ++N+ Sbjct: 293 --------------EGGSGVVEADEKSSAAGAGSVRSSASTVEMNT-------------- 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 S I+ +Y I++ W++KL+ +F TD++D + + ++ +T D+ Sbjct: 325 -SAVTIDRSNYETILDEASFNVWLEKLKAAELFAFDTETDSLDYMVANLVGLSFAT-DEG 382 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L LK E++ K+G N+KYD VL Sbjct: 383 VAAYVPVAHDYLDAPQQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDMSVLA 433 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ ++I K + ++I Sbjct: 434 RYGIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 493 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + +A E+++V L+L L + EKL +YE ++ P+I V+S++E TG+ ID Sbjct: 494 ELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDD 553 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 LL S EI+ L LE+ Y+++ ++FN++SPKQL ILF K+ P KT +G T Sbjct: 554 MLLGAQSQEIAVRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPST 613 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K I+E+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 614 NEEVLQELAL-DYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGR 672 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AF++ K+++ DYSQIELRI+AH++ L + F+ Sbjct: 673 LSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQ 732 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH AAEI GV+IE V+ + RR AK +NF +IYG+S F LA QL IPR EA Y+ Sbjct: 733 QGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYM 792 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ +Y+E T++ + G+VETI+GRR+H EI S R ERAAINAP+ Sbjct: 793 DTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPM 852 Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + ++ + K+L+Q+HDELVFEV E + + ME A Sbjct: 853 QGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVEESALAEIESKVQELMESA 912 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL +NW + Sbjct: 913 A----ELEVPLVAEAGHGDNWDQ 931 >gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031] gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031] Length = 935 Score = 599 bits (1544), Expect = e-169, Method: Compositional matrix adjust. Identities = 367/985 (37%), Positives = 556/985 (56%), Gaps = 73/985 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + +H AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQP----THIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A + V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 ALQASRLDKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 182 LMGDSADNIPGVAGVGEKTALALLQGIGSMTEIYANLEKVAELPIRGAKKLGEKLLAEKT 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + + L+L + +LI + EF + +N V D Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFSRYEFKRWLNEVMNGADSIT-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQF-SSLSDQTSKINS--EQTPQKLFLERL 355 TTE +K +Q+ ++L Q S+ NS E P ++ Sbjct: 300 --------QTTEQP-------------VKINQYQATLPAQNSEGNSAVENEP------KI 332 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 Q I+ Y ++ D+ W++KL + TD++D + + I+ + L+ Sbjct: 333 Q------IDRTKYEILLTQADLTCWIEKLNAAKLIAVDTETDSLDYMSANLVGISFA-LE 385 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + ++ ++D + T + ST L+ +K EN KIG NIK+D+ + Sbjct: 386 NGEAAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPDIHKIGQNIKFDESI 436 Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 R+GI ++G E D ML+SY L+S GR H++ +A+++L + + I K + Sbjct: 437 FARHGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESIAGKGKGQLTF 494 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589 ++I Q E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ Sbjct: 495 NQIPLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVL 554 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID D L S EI+ L +LE+ Y L+G+ FNL+S KQL +ILF KL P KT G Sbjct: 555 IDSDALFMQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGA 614 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + LE+++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T Sbjct: 615 PSTNEEVLEELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTA 673 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH++ L Sbjct: 674 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLIN 733 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIHR AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A Sbjct: 734 AFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQ 793 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 Y+ YF R+P + +++ + + GYVET+FGRR++ +INS + R ER AIN Sbjct: 794 KYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAIN 853 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AADI +RAMI + + + H +M++Q+HDELVFEV E++ + I ME Sbjct: 854 APMQGTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHME 912 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V + V NW E Sbjct: 913 AAA----ELVVPLIVEVGVGQNWDE 933 >gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01] gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01] Length = 937 Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust. Identities = 362/983 (36%), Positives = 540/983 (54%), Gaps = 65/983 (6%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P D +P NA+ G NML +++ + IA V Sbjct: 6 DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LASQASAMGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPGIPG+G KTA LLQ G++E + N I K + + + Sbjct: 181 ALMGDKVDNIPGIPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLADNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A +S +L ++ DV + E L+ N LI L F +N + Sbjct: 241 DNADMSYQLATIKLDVELEETPESLVKAQPNIDELIKLYGQLVFKSWLNEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 E +E + T + SS S TS + Sbjct: 292 -----------LEGGSGVVEADERSAATGAGAVRSSASAATSTVE-------------MN 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 S I+ +Y I++ W++KL+ +F TD++D + + ++ +T ++ Sbjct: 328 TSAVTIDRSNYETILDEASFNVWLEKLKAAELFAFDTETDSLDYMVANLVGLSFAT-EEG 386 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L LK E++ K+G N+KYD VL Sbjct: 387 VAAYVPVAHDYLDAPQQLDRDW---------VLEQLKPILEDDTQAKVGQNLKYDMSVLA 437 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ ++I K + ++I Sbjct: 438 RYGIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 497 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + +A E+++V L+L L + EKL +YE ++ P+I V+S++E TG+ ID Sbjct: 498 ELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKTIYEEIEVPLIPVMSRIERTGVFIDD 557 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 LL S EI+ L LE+ Y+++ ++FN++SPKQL ILF K+ P KT +G T Sbjct: 558 MLLGAQSQEIAVRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPST 617 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K I+E+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 618 NEEVLQELAL-DYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGR 676 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AF++ K+++ DYSQIELRI+AH++ L + F+ Sbjct: 677 LSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQ 736 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH AAEI GV I++V+ + RR AK +NF +IYG+S F LA QL IPR EA Y+ Sbjct: 737 QGKDIHAATAAEIIGVAIDQVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYM 796 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ +Y+E T++ + G+VETI+GRR+H EI S R ERAAINAP+ Sbjct: 797 DTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPM 856 Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + ++ + K+L+Q+HDELVFEV E + + ME A Sbjct: 857 QGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVQESALAEIESKVQQLMESA 916 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 +L VPL +NW + Sbjct: 917 A----DLEVPLVAEAGHGDNWDQ 935 >gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33] gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9] gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236] gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9] gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33] gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236] Length = 906 Score = 598 bits (1543), Expect = e-168, Method: Compositional matrix adjust. Identities = 354/956 (37%), Positives = 539/956 (56%), Gaps = 71/956 (7%) Query: 33 LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92 +P NAI G NM+ ++ ++ + AVIFD TFR+E+Y YKA+RP +P+ L Sbjct: 6 IPTNAIYGVVNMIRSMM----RQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELR 61 Query: 93 PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152 Q+ + +A G+P + I+G EADD+I T A + G V I + DKD+ QLV Sbjct: 62 CQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNI 121 Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212 L +T+ +D E VI+K+GIPPE ++ AL GD +DNIPG+PG+G KTA LLQ G Sbjct: 122 TLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIG 181 Query: 213 NLENILINASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266 LE + N +I K + + E A+LS +L ++ DV + + L+ + Sbjct: 182 GLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKLSYQLATIKCDVELEESPQTLLKQT 241 Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326 + L+S L F + + LD T GI + D Sbjct: 242 PDRDALMSLYGKLAFKSWLTEL---------------LDGGT----GI-----VTADEQT 277 Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386 KTS S++ T+ ++ P+ I+ Y I+N +D Q W++KL+ Sbjct: 278 KTS---SVTVSTAATHAAAIPES---------PAAHIDRSQYQTILNEQDFQLWLEKLKQ 325 Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446 +F TD +D + + ++ + + + + V ++D +D Sbjct: 326 AELFAFDTETDNLDYMVANLVGMSFA-VAEGEAAYLPVAHDYLDAPQQLERDW------- 377 Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505 +++ LK E+E K+G N+KYD V+ RYG+ +RG D ML SYV +S HD+ Sbjct: 378 --VIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 435 Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+A ++L ++ +++ K+ + ++I+ + ++A E+++V L+L + P ++ Sbjct: 436 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHP--LI 493 Query: 563 E---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 E KL VY ++ P++ V+S++E TG+ ID LL S EI+ L LE+N Y+L+G+ Sbjct: 494 EQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQ 553 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 FNLSSPKQL ILF ++K P KT +G T + L+++ D P+ K ++E+R L+K Sbjct: 554 PFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAK 612 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 +KSTY D LP IN T RVHT Y A T TGRL+S +PNLQNIP++ + G++IR+AF++ Sbjct: 613 LKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVA 672 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 P K+++ DYSQIELRI+AH++ L F + DIH AAEI GV I++VS + RR Sbjct: 673 PHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRR 732 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++ Q GYV Sbjct: 733 RAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYV 792 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLAT 918 ETIFGRR+H EI S + R ERAAINAP+QG+AADI ++AM+ V + +E + Sbjct: 793 ETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRV 852 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 K+L+Q+HDELVFEV E ++ + ME A L VPL +NW++ Sbjct: 853 KLLMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQ 904 >gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1] gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1] Length = 927 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 353/987 (35%), Positives = 537/987 (54%), Gaps = 75/987 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M K L LVDGSS++YRAF+A P L R G P + G + +LQ RK+ A + Sbjct: 1 MSKPKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPASPATGAIRGMINMLQALRKDYPADY 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A +FD TFR+ +YP+YKA+R +P+ L Q+ + + G P + + G EADD+ Sbjct: 60 AACVFDASGPTFRDTLYPEYKAHRAPMPDDLRAQIEPIHQVVRLLGWPVVCVPGVEADDV 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T A ++G V + S DKDL QLV + DT+ ++ D+ V ++G+PP MV Sbjct: 120 IGTLAACAARQGIEVIVSSGDKDLSQLVDEHITIIDTMSGKRRDVAGVTAEFGVPPSLMV 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 Q L GD++DN+PG+P +G KTAA L EYG+L+ +L A IK EN+ + Sbjct: 180 DYQTLVGDAVDNVPGVPKVGPKTAAKWLNEYGSLDGLLARAGEIKGVAG-ENLRNALDWL 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVATTYDC 294 R+LV +RTD + +E L D +L F + F L + T Sbjct: 239 PKGRELVTIRTDCDLAGHVEGLPALDGIAAGALETAQLREFYEKFGFKGLARALEDTTPA 298 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 +A P G + + D TT F + + Q ++ Sbjct: 299 NATATLP-----------GASGDLFADSGTT-----FVAEAAQGREV------------- 329 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 +Y I+ ++ +W +++ + T+++D ++ + + Sbjct: 330 ------------AYDTILAWEEFDRWFARIQAADLVALDTETNSLDELRAQIVGL----- 372 Query: 415 DQKDDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471 SF VE +I L+ H+ ++ + L +L LK + E+ K+G ++KY Sbjct: 373 ------SFSVEPGAAAYIPLA-HSGPEAPEQLPLDT-VLERLKPWLEDASRPKLGQHVKY 424 Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSS 527 D+ V +GI +RG+ D ML SYVL+ R H++AS+A++ T +++ Sbjct: 425 DRHVFANHGIDVRGYAHDTMLQSYVLEVHRP-HNLASLAERHTGRTGISYEDLCGKGAKQ 483 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 IP ++ Q ++ E+S+ L + +L P + ++ L L+ +V+ ++E G Sbjct: 484 IPFAQVPVEQAAAYSCEDSDQTLDVHRVLWPLIEADEKLRAIYALEMESSEVLFRIERNG 543 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + ID L+Q S ++ + +L LE+ YD++G+ FNL SPKQLG+I F KL P KT T Sbjct: 544 VLIDTATLQQQSHDLGQRILRLEQEAYDIAGQPFNLGSPKQLGEIFFDKLGLPVVKKTAT 603 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + LE++ D P+ ILE R LSK+K TY D L + RT RVHT Y+ A Sbjct: 604 GARSTDEEVLEKL-AEDYPLPAKILEHRSLSKLKGTYTDKLGQLADPRTGRVHTHYAQAV 662 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 +TGRL+S EPNLQNIPI+T G+++R AF++PP + + SADYSQIELRI+AH++ L Sbjct: 663 AVTGRLSSNEPNLQNIPIRTAEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGDDAL 722 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F LD+HR AAE+FGV +++VS + RR+AK INF +IYG+S F LA L I Sbjct: 723 LRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIDNKA 782 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 AA YI RYF R+PG+ +Y+++TK + GYVET+FGRR++ EINSP R ERAA Sbjct: 783 AAAYIDRYFQRYPGVKQYMDETKASAKARGYVETVFGRRLYLPEINSPNGPRRGAAERAA 842 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AAD+ ++AM++V L+ K M++Q+HDELVFE+PEEE S + Sbjct: 843 INAPMQGTAADLIKKAMVAVQAVLDADKPQVLMIMQVHDELVFELPEEE----SGWLRTE 898 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 + + L+VPL + + NW++ Sbjct: 899 VPRLMAGVAELKVPLLAEVGMGPNWEK 925 >gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36] gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36] Length = 931 Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust. Identities = 351/982 (35%), Positives = 546/982 (55%), Gaps = 71/982 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS+++RA+++ P L+ +G+ A+ G NML LL SH AVI Sbjct: 7 NPLVLVDGSSYLFRAYHSPPHLTNA-EGMATGAVYGVVNMLKSLLTQFDP----SHIAVI 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFRNE+YP+YKANRP +P+ L Q+ V A +A G+P I I G EADD+I T Sbjct: 62 FDAKGPTFRNEMYPEYKANRPPMPDDLRCQIEPVHKAVKALGLPLICISGVEADDVIGTI 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A EG AV I + DKD+ QLV L +T+ + +D + V K+G+PPE ++ L Sbjct: 122 AKQASAEGRAVLISTGDKDMAQLVDENVTLINTMTDTVLDPQGVKDKFGVPPELIIDLLG 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAE 238 L GD+ DNIPG+PG+G KTA LLQ G++++I N I K + ++E+ + Sbjct: 182 LMGDASDNIPGVPGVGAKTALGLLQGLGSIKDIYNNLDAIAPLGFRGSKTLAKKMIEHKD 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 +A +S L ++ DV + L+ L + + + L + + F + + + D Sbjct: 242 SAEISYALATIKLDVETGVTLDDLAISETDTDALAELYQQMGFKRWLAALLGGADA---- 297 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 + K++ +S SD + Sbjct: 298 ------------------TKHVYAGKAAKSNSAASESDSNDVV----------------- 322 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 + I+ +Y I+ D +W++KL+ +F T +++ ++ + ++ + + + + Sbjct: 323 APCTIDRSNYETILTQADFDRWLEKLQKAELFAFDTETTSLNYIQAELVGLSFA-VAEGE 381 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 V +ID +D +L+ LK E+ + K+G N+KYDK VL Sbjct: 382 AAYLPVAHDYIDAPEQLDRD---------HVLASLKTLLEDSNAKKVGQNLKYDKSVLAN 432 Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534 YGI++ G D M+ SYV +S + HD+ S+A K+L + + +EI K + ++I Sbjct: 433 YGINLAGIAYDTMIESYVYNSIATRHDMDSLADKYLGHKTISFEEIAGKGKKQLTFNQIE 492 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 Q +A E+++V L+L +L PK+ E L+ ++ ++ P++ ++S +E G+ ID+ Sbjct: 493 LEQASAYAAEDADVTLRLHNVLWPKIEAEPSLVALFNEVELPLVSILSSVERQGVLIDKS 552 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L S E+ +L LE ++++ + FNLSSPKQL +ILF K++ P KT G +T Sbjct: 553 KLDAQSVELGARMLELEAKAHEIAEQPFNLSSPKQLQEILFVKMELPVIKKTPKGA-AST 611 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 A+D+ Q + P+ K ILE+R LSK+KSTY D LP I ++T RVHT Y A T TGRL Sbjct: 612 AEDVLQELALNYPLPKIILEYRSLSKLKSTYTDKLPTLIEEKTGRVHTSYHQAVTATGRL 671 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIP++ G++IR+AFI K ++ DYSQIELRI+AH+++ L F Sbjct: 672 SSSDPNLQNIPVRAGEGRRIRQAFIPETGYKYVAVDYSQIELRIMAHLSQDKGLLTAFSE 731 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIHR AAE+F V ++ V+ RR AK INF +IYG+S F L QL IP+ EA Y+ Sbjct: 732 GKDIHRATAAEVFSVELDDVTSDQRRSAKAINFGLIYGMSAFGLGRQLNIPQKEAKKYMT 791 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 RYF R+PG+ Y+++T+ + GYVET+ GRR++ EIN+ + ERAAINAP+Q Sbjct: 792 RYFERYPGVLTYMDETRKVAKDKGYVETLSGRRLYLPEINARNKMSQMAAERAAINAPMQ 851 Query: 894 GSAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 G+A+DI ++AMI+V +E + + +ML+Q+HDELVFE+ EE + + V +++ Sbjct: 852 GTASDIIKKAMINVAGWMETVETNSIRMLMQVHDELVFEIKEEHV----EAYVVKIKELM 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 ++L VPL V +NW E Sbjct: 908 AAAMSLDVPLLAEAGVGDNWDE 929 >gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] Length = 940 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 360/994 (36%), Positives = 557/994 (56%), Gaps = 76/994 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFL+D + I+R +YA P ++ K G+ +AI GF N L +++ + + Sbjct: 1 MSNQKRLFLLDAFALIFRGYYAFIKNPRINSK--GMDTSAIMGFTNSLLDVIKREKPD-- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 H AV FD R ++ DYKANR + PE + +P ++ +A IP IE GFEA Sbjct: 57 --HLAVCFDKGGSVSRTAMFTDYKANRDETPEAIRIAVPYIQEILKAMHIPVIEKAGFEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175 DDII T AEKE F V +++ DKD QLVS +Y + + + I+ WGIP Sbjct: 115 DDIIGTLAKQAEKEDFKVFMVTPDKDFAQLVSENIFMYRPAR-----MGNGIEIWGIPEV 169 Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 PE+++ + GD++DNIPG+PG+G KTA L+EYG++E +L N IK Sbjct: 170 KAKFEIERPEQVIDYLGMMGDAVDNIPGLPGVGDKTAKKFLKEYGSMEALLENTHEIK-G 228 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 K +E I E LS++L + DVP+T + L + + + + LEF ++ Sbjct: 229 KLKEKIEANKELGLLSKELATILLDVPVTFEADSYALTSPDEQAVSALFEELEFRRMAEN 288 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347 + AN+E T + K + ++ + QF + S +E + Sbjct: 289 FKKIFGAPTANLE-------TPKEKAPSQPSQ-------EGQQFDLFAAPGSGTITESS- 333 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 + N+ Y + +T Q +++L S F T +++A ++ + Sbjct: 334 -------VDNRKNLKTNDHWYQHVNSTLASAQLLKELLQQKSVCFDTETTSLNALEAELV 386 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 IA S K + ++ L +D T EIL K FFE+ KIGH Sbjct: 387 GIAFSW--------NKGKGYYLALP----EDKTE----VLEILDPFKAFFEHPEIEKIGH 430 Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----K 522 N+KYD VL Y I ++ D M+ Y+++ H++ +A+ +L+Y+ + I K Sbjct: 431 NLKYDLKVLRNYDIHVKAPLFDTMIAHYLINPDMR-HNMDILAETYLNYSAQSITELIGK 489 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K+ + ++S Q E+A+E++++ LQL ++ K L +Y++++ P++ V++ Sbjct: 490 KGKNQGTMREVSLEQQTEYAVEDADITLQLKEYFHEEMSTAKTLELYQKVELPLVSVLTN 549 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641 ME GI +D LK +S +++++ LE I++++GE FNL+SPKQLG ILF KLK Sbjct: 550 MECEGINLDVSFLKSLSVTLAEDIQKLEAAIFEVAGENFNLASPKQLGLILFDKLKLVDK 609 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTGQ+ +TA+D+ D+PII +IL+WR L K+++TY D+LPN IN +T RVHT Sbjct: 610 PKKTKTGQY-STAEDVLSYLAKDHPIISDILDWRSLQKLQNTYVDALPNEINPKTGRVHT 668 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAH 760 Y+ A TGRL+S PNLQNIPI+T+ GQ++R+AFI L++ADYSQIELRI+A Sbjct: 669 IYNQAVAATGRLSSNNPNLQNIPIRTERGQQVRKAFIPRDENHVLMAADYSQIELRIIAA 728 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ + F+N+ DIH A+++F V +E+V+ + R +AKT+NF IIYG+S F L+ Q Sbjct: 729 LSGDEGMLSAFQNNEDIHSATASKVFNVPLEEVTREQRGNAKTVNFGIIYGVSAFGLSQQ 788 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 + RSEA + I+ Y+ +P + Y++ +F R NGYV T+ GRR + +INS + +R Sbjct: 789 TNLNRSEAKELIETYYATYPKLRSYMQDQVDFARDNGYVSTVLGRRRYLKDINSQNAIVR 848 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQGSAADI + AMI++ LE+ +KMLLQ+HDELVF+VP+EEI T Sbjct: 849 GAAERNAVNAPIQGSAADIIKLAMIAIQNRLENKNWKSKMLLQVHDELVFDVPKEEINTL 908 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ ME A + VPL V+I + NNW E Sbjct: 909 QEMVKKEMENA----FEINVPLIVDIGIGNNWLE 938 >gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis] Length = 920 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 356/973 (36%), Positives = 549/973 (56%), Gaps = 67/973 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 LVDGS F++RAF+A P L+ GL NAI G + + KL++ ++ +H AVIFD P Sbjct: 6 LVDGSYFLFRAFHALPPLTTS-TGLHTNAIRGAISAIQKLMRRTQP----THMAVIFDTP 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR+E+ P YK +RP +P L Q+P + +A GIP + G EADDII T A Sbjct: 61 EPTFRHELSPIYKGDRPSMPTELSEQIPYLHALIRALGIPLHTLPGAEADDIIGTLAKRA 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 E G V I + DKD+ QLV+ L D+ KE+ +D++ V +K+G+ P +++ L GD Sbjct: 121 EAMGHQVLISTGDKDMAQLVTEKVTLEDSFKEKPLDVDGVFEKFGVWPNQIIDYLTLMGD 180 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248 + D I G+PG+G KTAA LL EYG++ IL N +IK K +NI E+ + L +L Sbjct: 181 ASDGIMGVPGVGAKTAAKLLTEYGSIGGILENVDKIK-GKVGQNIKEHVDGIALDHQLAS 239 Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308 + D+ + + L L + N L LEF + + + + +N + IN Sbjct: 240 IVIDLDLNFGYDDLKLGEPNIETLRHLYTELEFRNQLQSLDHPNNPNNSNYQQAAKSINA 299 Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368 K + ++ ++ +S DQ + +Y Sbjct: 300 ---KAVTAPEPLEDHASVTSS-----DDQ-------------------------LGQATY 326 Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428 ++N +D ++L T +F T ++D ++ + +++ D +D + Sbjct: 327 HTVLNQQDWDTLFERLSTEKRFAFDTETTSLDYRIAQIVGFSVA-FDAQD-------AYY 378 Query: 429 IDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 + L+ D G L +E IL+ +K E+E KIGH++KYD VL +GI + G Sbjct: 379 VPLA----HDYEGAPEQLNREVILAQIKPILEDESVKKIGHHLKYDAHVLENHGIHLAGW 434 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 + D ML SYVL S + H + +A+ +LS+ T +++ ++I +A Sbjct: 435 YFDTMLASYVLYSVATRHGMDDVARLYLSHLTTTYEQVAGRGAKQKTFNQIPLETAAHYA 494 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V +L+ +L KL +L+++ ++ P+ V++QME GI++D L Q+ E Sbjct: 495 AEDAHVTYRLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGE 554 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 S + +LE I +++GE FN+SSPKQ+G++LF KL G KT TGQ+ T+ LE+I Sbjct: 555 FSNTMQNLENQIMEIAGESFNVSSPKQVGEVLFEKLGLKGGKKTTTGQYSTSESVLEKI- 613 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 ++PI + ILE+R LSK+KSTY D L N T RVHT Y A T TGRL+S +PNLQ Sbjct: 614 --EHPIAQLILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQ 671 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+ ++G++IR+AF++P + L++ADYSQIELR++AH+++ L F + D+HR Sbjct: 672 NIPIRAEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEALLDAFIHGQDVHRRT 731 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G+ +E+V+ RR AK +NF ++YG+S F L QL R E+ DYIK+YFHR+PG Sbjct: 732 AAEVLGIPLEEVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQDYIKQYFHRYPG 791 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I++Y+++T+ + G+VET+ GRR++ +I++ +R ERAAINAP+QGSAADI + Sbjct: 792 IYDYMQRTRQVALEQGFVETLLGRRLYTPDIDARNMMVRKAAERAAINAPLQGSAADIIK 851 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI V K L K KMLLQ+HDELVFEV E+ + + M+ + + VP Sbjct: 852 MAMIEVDKMLP--KDQAKMLLQVHDELVFEVDEDIADELAPKLAEVMQSV----LQISVP 905 Query: 962 LKVNIKVSNNWQE 974 L V + NW E Sbjct: 906 LVVEVGKGKNWDE 918 >gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103] gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103] Length = 928 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 361/984 (36%), Positives = 547/984 (55%), Gaps = 76/984 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLKSLL----VQYSPTHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRSQIEPLHEMVRAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK+G AV I + DKD+ QLV+P L +T+ + E V +K+G+PP ++ Sbjct: 121 LALEAEKKGHAVLISTGDKDMAQLVTPGITLINTMTNTILGPEEVEQKYGVPPSLIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 A+ GDS DNIPG+PG+G KTA LLQ G +++I N ++ K + + Sbjct: 181 AMMGDSSDNIPGVPGVGEKTAQALLQGLGGMQSIYDNLDKVADLSFRGAKTMAAKLEQNR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS +L ++TDV + P E L + + + L + EF + + Sbjct: 241 DVAFLSYQLATIKTDVELDQPCEALTVSEPDVNALQALFSRFEFKRWLT----------- 289 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + E K + Q +K N Q Q L E + Sbjct: 290 ---------DLQEGKWL----------------------QGTKSN-RQAQQVLTDEPVAS 317 Query: 358 LSQYPI-NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 + + + D Y I++ + + WV+KL+ +F + TD +D + + ++ + + Sbjct: 318 VEATSLLSADGYITILDQQTLDAWVEKLKNSEVFAFDLETDGLDTLTANIVGLSFA-VAP 376 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + V ++D +D+ +L+ LK E+ K+G N+KYD+ VL Sbjct: 377 GEAAYLPVAHDYLDAPEQLDRDA---------VLAQLKPLLEDPDASKVGQNLKYDRGVL 427 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 Y I + G + D ML SY+L+S HD+ S++ +WL++ T +EI K+ + ++ Sbjct: 428 KNYDIELAGIKYDTMLESYILNSVVGKHDMDSLSARWLNHKTITFEEIAGKGKNQLTFNQ 487 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQID 591 I+ Q +A E+++V LQL L + P+L E V+E+++ P++ V+S++E G+ ID Sbjct: 488 IALEQAAHYAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLKVISRVERNGVLID 547 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 Q +L Q S E++ L LE ++L+GE FNLSS KQL ILF K KT G Sbjct: 548 QAILAQHSKELTSRLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKPTKKTPGGAPS 607 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+ + L ++ D P+ K ILE R LSK+KSTY D LP IN + RVHT Y A T TG Sbjct: 608 TSEEVLAELAL-DYPLPKVILEHRGLSKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATG 666 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP++ D G++IR+AF++ ++++ADYSQIELRI+AH+++ L F Sbjct: 667 RLSSTDPNLQNIPVRNDEGRRIRQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAF 726 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIHR A+E+FGV + KV+ + RR AK INF +IYG+S F L+ QL I EA Y Sbjct: 727 SQGEDIHRATASEVFGVPLSKVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKY 786 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF R+PG+ Y+E T+ NGYVET+ GRR+ +I S + R ERAAINAP Sbjct: 787 MDLYFERYPGVLRYMENTRQLAASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAP 846 Query: 892 IQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 +QG+AADI +RAMI++ L+ A +M++Q+HDELVFE+ E + AS+ I ME Sbjct: 847 MQGTAADIIKRAMIALDDWLQKQTDDAVRMIMQVHDELVFEIKAEAVDEASKQIRALMEG 906 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 + + L VPL V + V +NW + Sbjct: 907 S----MALDVPLLVEVGVGDNWDQ 926 >gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145] gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145] Length = 931 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 367/982 (37%), Positives = 557/982 (56%), Gaps = 70/982 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LFL+DG + IYRA +A R G+ +A+ GF N L ++L K+ +H AV+F Sbjct: 4 LFLLDGMALIYRAHFALSKNPRFTSTGINTSAVMGFTNTLLEVL----KKEQPTHMAVVF 59 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A T R+ + YKANR +PE L LP V+ + F IP I G+EADD+I T Sbjct: 60 DTEAPTERHTGFEAYKANRQAMPEDLAVALPYVKKLIEGFNIPVITSDGYEADDVIGTLA 119 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP-EKMV 180 AEK G+ V ++ DKD QLVS +Y + E + ++ V++KW I +++ Sbjct: 120 KQAEKVGYTVYCMTPDKDFAQLVSENIFIYKPARMGNDMEILGVKEVLEKWEIEHVHQVI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + L GD++DNIPGIPGIG KTA L++++G++E I+ N+ ++K K+REN+ +A+ Sbjct: 180 DILGLWGDAVDNIPGIPGIGEKTAKALVKQFGSVEQIIANSDQLK-GKQRENVENFADQG 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS++L + D P+ E +++D + L LEF L RV Sbjct: 239 ILSKRLATILLDAPVEFHEEDFLIKDPSKEVLEPLFAELEFRTLGKRVF----------- 287 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 G + R ++ + F S+S+ + ++ + +Q Sbjct: 288 ------------GESFSVAEARPSSGQMDLFGSISENNLPVQKPSVIDEIIPGKNISNTQ 335 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 + +Y I +++Q+ + L S T +DA ++ + ++ + Sbjct: 336 H-----NYILIDKLEELQKLTETLLQQKEVSMDTETTGLDANDAELVGLSFA-------- 382 Query: 421 SFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 +K E +I + H K L E L L+ ENE+ KIG N+KYD ++L Y Sbjct: 383 -YKAREAYYIAVPKHE------KGIL--EFLEVLRPLLENENIRKIGQNLKYDYIILKWY 433 Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535 GI ++G F D ML Y+LD + H++ +++ +L YT E++ K+ + + I Sbjct: 434 GIELKGEFFDTMLAHYLLDPD-TRHNMDVLSENYLGYTPISITELIGKGKNQLNMRDIDV 492 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 ++V ++A E+++V LQL + P LI + + + ++ P+I+V+ ME G++ID + L Sbjct: 493 AKVTDYAAEDADVTLQLQQVFEPMLIEAQAEKLAKEVENPLINVLGDMEKEGVKIDVEQL 552 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTA 654 + S ++ ++ LE IY +G +FN++SPKQLG+ILF KL+ P KTKTGQ++T Sbjct: 553 IRFSRDLQDDIGKLENTIYHKAGHRFNIASPKQLGEILFDKLQLDPKAKKTKTGQYQT-G 611 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 +D+ + I+K+IL++RQL K+KSTY D+LP INK+T RVHT Y+ A TGRL+ Sbjct: 612 EDVLLALANKSDIVKDILDFRQLQKLKSTYVDALPLMINKKTGRVHTSYNQAVAATGRLS 671 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFEN 773 S PNLQNIPI+T+ G+++R+AFI L+SADYSQIELRI+A I+K + F Sbjct: 672 SNNPNLQNIPIRTEKGREVRKAFIPRDENHILLSADYSQIELRIIAEISKDENMMDAFSK 731 Query: 774 SLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 LDIH AA+++GV N+E V+ RR+AK +NF IIYG S F L+ L IPR EAA+ I Sbjct: 732 GLDIHTATAAKVYGVANLEDVTSDQRRNAKAVNFGIIYGQSAFGLSQNLGIPRKEAAEII 791 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 + YF ++ GI Y+ T NF R+NGYVETI GRR + +INS +++R ER AINAPI Sbjct: 792 ENYFEQYKGIKNYMSDTMNFARENGYVETIMGRRRYLRDINSANATVRGFAERNAINAPI 851 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAAD+ + AM+++HK L D KL +KM +Q+HDELVF+V E +II+ M+ A Sbjct: 852 QGSAADMIKIAMLNIHKDLIDRKLQSKMTMQVHDELVFDVLVTEKDIVKEIIMDRMKNA- 910 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 I VP+ V I NW E Sbjct: 911 ---IKTTVPIVVEIGEGLNWLE 929 >gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 957 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 366/999 (36%), Positives = 560/999 (56%), Gaps = 77/999 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ K +G P A+ G NML L+ SH AV Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A GIP I I+G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A G V I + DKD+ QLV+ L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+ G+G KTA LLQ G+L+ I N ++ K + Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS L ++TDV + + E L+++ L+ EF + +N V + A Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N PV T+N E +I + + + + + +EQT K+ ++R Sbjct: 296 N--PV------TQNS----EEKIPNN-------YQATASVPQAVETEQTFAKVEIDR--- 333 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413 Y + + +Q W++K+ + + TD +D+ + + ++ Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385 Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFL 463 L K+ + + + + ++ +T K++ L+ LK EN Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---K 518 KIG NIKYD + +G+ + G D ML SY L+S GR H++ +A ++L + + Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIEFE 503 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKP 575 EI K+ + DKI+ ++A E+++V ++L +L P+L EK L+ ++ ++ P Sbjct: 504 EIAGKGKNQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPEL--EKAPTLVKLFNEIEMP 561 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 +++V+S++E G+ ID + L SAEI + L LE+ ++ +GE FNL+S KQL +ILFT Sbjct: 562 LVEVLSRIERNGVLIDPEKLLAQSAEIEQRLSELEQLVHSEAGEVFNLASTKQLQEILFT 621 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 KL P KT G T + L+++ + + K ++E R LSK+KSTY D LP IN + Sbjct: 622 KLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINPK 681 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T RVHT Y A T TGRL+S +PNLQNIPI+ + G++IR+AFI+ K+++ADYSQIEL Sbjct: 682 TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQIEL 741 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH+A + F DIHR AAEIFG+ +++V+ + RR AK INF +IYG+S F Sbjct: 742 RIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF 801 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 L+ QL I R++A Y++RYF R+P + +++ + + GYVET+FGRR++ EI S Sbjct: 802 GLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSS 861 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + R ER AINAP+QG+AADI + AMI + K++ + KM++Q+HDELVFEV EE Sbjct: 862 NAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEE 920 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + SQ+I MEKA I L+VPL + V +NW E Sbjct: 921 LVEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955 >gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 957 Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust. Identities = 364/997 (36%), Positives = 558/997 (55%), Gaps = 73/997 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ K +G P A+ G NML L+ SH AV Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A GIP I I+G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A G V I + DKD+ QLV+ L +T+ +D E VI K+GIPPE ++ Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYA 237 AL GD+ DNIPG+ G+G KTA LLQ G+L+ I N ++ R + Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLALKLEAEK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS L ++TDV + + E L+++ L+ EF + +N V + A Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N PV T+N E +I + + + + + +EQT K+ ++R Sbjct: 296 N--PV------TQNS----EEKI-------PNNYQATASVPQAVETEQTFAKVEIDR--- 333 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413 Y + + +Q W++K+ + + TD +D+ + + ++ Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385 Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFL 463 L K+ + + + + ++ +T K++ L+ LK EN Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---K 518 KIG NIKYD + +G+ + G D ML SY L+S GR H++ +A ++L + + Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIEFE 503 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMI 577 EI K+ + DKI+ ++A E+++V ++L +L P+L L+ ++ ++ P++ Sbjct: 504 EIAGKGKNQLTFDKIAIDVASKYAAEDADVTMKLHQVLTPELDKTPTLVKLFNEIEMPLV 563 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 +V+S++E G+ ID + L SAEI + L LE+ ++ +GE FNL+S KQL +ILFTKL Sbjct: 564 EVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEILFTKL 623 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 P KT G T + L+++ + + K ++E R LSK+KSTY D LP IN++T Sbjct: 624 GLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTG 683 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 RVHT Y A T TGRL+S +PNLQNIPI+ + G++IR+AFI+ K+++ADYSQIELRI Sbjct: 684 RVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRI 743 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 +AH+A + F DIHR AAEIFG+ +++V+ + RR AK INF +IYG+S F L Sbjct: 744 MAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGL 803 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 + QL I R++A Y++RYF R+P + +++ + + GYVET+FGRR++ EI S + Sbjct: 804 SNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNA 863 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 R ER AINAP+QG+AADI + AMI + K++ + KM++Q+HDELVFEV EE + Sbjct: 864 MRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEELV 922 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 SQ+I MEKA I L+VPL + V +NW E Sbjct: 923 EHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955 >gi|332533751|ref|ZP_08409609.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505] gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505] Length = 911 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 361/982 (36%), Positives = 554/982 (56%), Gaps = 89/982 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS+++RA+++ P L+ G AI G NML L+ ++ SH V Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSK-GEATGAIYGVINMLKSLI----RQYDPSHMVV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFRN++Y +YKANRP +P+ L Q+ + +A G P I I+G EADD+I T Sbjct: 61 IFDAKGKTFRNDMYSEYKANRPPMPDDLRTQIAPIHSIIKAMGFPLISIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + IA ++ V + + DKD+ QLV+ L +T+ + D V++K+G+ PE ++ Sbjct: 121 FARIATEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPVTVVEKFGVGPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD +DNIPG+ G G KTA L++YG+L+ ++ +AS IK K E + + LS Sbjct: 181 ALMGDKVDNIPGVEGCGPKTAVKWLEKYGSLQGVMDHASEIK-GKIGEKLAAALDHLPLS 239 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 +L ++ DV + L+ L++ N LI+ EF + + + Sbjct: 240 YELATIKCDVEVESDLDTFKLQEPNKDELIALYGECEFRRWLAEL--------------- 284 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 LD +A+ TE + + P+ + Sbjct: 285 LDNPKDAETHLAVPTE-----------------------ATELPK--------------V 307 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 + Y I+ +++L + +F T ++D ++ + + SF Sbjct: 308 EDAHYETILTQAQFDTLIEQLNSAELFAFDTETTSLDYMKAQLVGM-----------SFA 356 Query: 424 V---ETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 V E +++ L+ D G L+ E ++ L +E+ K+G N+KYDK VL Sbjct: 357 VKAGEAVYLPLA----HDYPGAPEQLSLEFVMQKLGPILADENKAKVGQNLKYDKSVLAN 412 Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534 G ++ G + D ML SYV +S + HD+ S+A K+L + + ++I K + ++I Sbjct: 413 AGFALNGIKFDTMLESYVFNSVGTRHDMDSLALKYLGHKNISFEDIAGKGKKQLTFNQIE 472 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 + +A E++++ L+L +L PK+ EKL V+E ++ P++ V+S +E TG+ ID + Sbjct: 473 LEKAAPYAAEDADITLRLHEVLWPKIAADEKLKSVFEDIEMPLVSVISDIERTGVAIDSN 532 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 +L S + + L+ LE+ ++++GE FNLSSPKQL +LF KL P KT G +T Sbjct: 533 MLAAHSMRLGERLIELEKEAFEIAGEPFNLSSPKQLQVLLFEKLGLPIIKKTPKGA-PST 591 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 A+++ Q D P+ K I+E R LSK+KSTY D LP +N++TQRVHT Y A T TGRL Sbjct: 592 AEEVLQELAHDYPLPKVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAITATGRL 651 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIPI+++ G++IR AFI+ K+++ADYSQIELRI+AH+++ L F N Sbjct: 652 SSTDPNLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLNAFAN 711 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 LD+H AAE+FGV ++ V+ MRR AK +NF +IYG+S F LA QL +PR EA YI Sbjct: 712 GLDVHSATAAEVFGVELDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYID 771 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 +YF RFPG+ EY+E T+ +NGYVETIFGRR+H EIN+ + R ERAAINAP+Q Sbjct: 772 KYFERFPGVLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQ 831 Query: 894 GSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 G+AADI ++AM+SV++ + + T K+L+Q+HDELVFE+ + ++ I M +A Sbjct: 832 GTAADIIKKAMLSVNRWVHEQAPNTIKLLMQVHDELVFEIKTDCAPEYTKHICELMSQAA 891 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V +NW++ Sbjct: 892 ----ALDVPLIVEADEGDNWEQ 909 >gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)] gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)] Length = 906 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 353/956 (36%), Positives = 539/956 (56%), Gaps = 71/956 (7%) Query: 33 LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92 +P NAI G NM+ ++ ++ + AVIFD TFR+E+Y YKA+RP +P+ L Sbjct: 6 IPTNAIYGVVNMIRSMM----RQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELR 61 Query: 93 PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152 Q+ + +A G+P + I+G EADD+I T A + G V I + DKD+ QLV Sbjct: 62 CQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNI 121 Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212 L +T+ +D E VI+K+GIPPE ++ AL GD +DNIPG+PG+G KTA LLQ G Sbjct: 122 TLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIG 181 Query: 213 NLENILINASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266 LE + N +I K + + E + A+LS +L ++ DV + + L+ + Sbjct: 182 GLEALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIKCDVELEESPQTLLKQT 241 Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326 + L+S L F + + LD T G+ + D Sbjct: 242 PDRDALMSLYGKLAFKSWLTEL---------------LDGGT----GV-----VTADEQT 277 Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386 KTS S++ T+ ++ P+ I+ Y I+N +D Q W++KL+ Sbjct: 278 KTS---SVTVSTAASHAAAIPES---------PAAHIDRSQYQTILNEQDFQLWLEKLKQ 325 Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446 +F TD +D + + ++ + + + + V ++D +D Sbjct: 326 AELFAFDTETDNLDYMVANLVGMSFA-VAEGEAAYLPVAHDYLDAPQQLDRDW------- 377 Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505 +++ LK E+E K+G N+KYD V+ RYG+ +RG D ML SYV +S HD+ Sbjct: 378 --VIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 435 Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+A ++L ++ +++ K+ + ++I+ + ++A E+++V L+L + P ++ Sbjct: 436 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHP--LI 493 Query: 563 E---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 E KL VY ++ P++ V+S++E TG+ ID LL S EI+ L LE+N Y+L+G+ Sbjct: 494 EQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQ 553 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 FNLSSPKQL ILF ++K P KT +G T + L+++ D P+ K ++E+R L+K Sbjct: 554 PFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAK 612 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 +KSTY D LP IN T RVHT Y A T TGRL+S +PNLQNIP++ + G++IR+AF++ Sbjct: 613 LKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVA 672 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 P K+++ DYSQIELRI+AH++ L F + DIH AAEI GV I++VS + RR Sbjct: 673 PHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRR 732 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++ Q GYV Sbjct: 733 RAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYV 792 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLAT 918 ETIFGRR+H EI S + R ERAAINAP+QG+AADI ++AM+ V + +E + Sbjct: 793 ETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRV 852 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 K+L+Q+HDELVFEV E ++ + ME A L VPL +NW + Sbjct: 853 KLLMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWDQ 904 >gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] Length = 920 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 352/981 (35%), Positives = 550/981 (56%), Gaps = 84/981 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS++YRA++A P L+ G A+ G NM+ +LL K+ S VIFD Sbjct: 9 IVLVDGSSYLYRAYHALPPLTNSK-GQATGAVKGVINMIRRLL----KDHPGSPSVVIFD 63 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++IYP+YKA+RP +P+ L Q+ + +A G+P I I G EADD+I TY Sbjct: 64 AKGKTFRDDIYPEYKAHRPPMPDDLREQIEPIHNIIKAMGLPLIIIDGVEADDVIGTYAR 123 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G V + + DKD+ QLV+ L +T+ + +D E V+ K+GIPP ++ AL Sbjct: 124 QATEQGLDVIVSTGDKDMAQLVNKHITLVNTMNDTVMDEEGVLVKFGIPPSLIIDYLALI 183 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETA 240 GD +DNIPG+ G+G KTA LLQ G+++ I N ++ + K + + E A Sbjct: 184 GDKVDNIPGVAGVGEKTALGLLQGIGSIDEIFANLDKVPELPIRGAKTLSAKLEKEKEVA 243 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +L ++ DV + +E L + + + L+++ + +EF + + + + + Sbjct: 244 YLSYELATIKLDVDLPDSIESLAMVEPDSELLLTYFEDMEFKSWVEDL----EKGGSGLP 299 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 P +A+ +E I TP Sbjct: 300 P----------PAVAVSSE--------------------AIAEPPTP------------- 316 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 P D Y ++ D +W+ KLE +F T +++ ++ + + Sbjct: 317 -PACVD-YQLVLTEHDFSRWLTKLEAAPYFAFDTETTSLNYMEARVVGV----------- 363 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 SF VE V D G E +L+ LK E+ K+G N+KYD+ VL Sbjct: 364 SFAVEAGSA-AYVPFGHDYVGVEQQLSEDWVLAQLKPLLEDSSRAKVGQNLKYDRNVLAN 422 Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 +GI + G + D ML SYVL+S + HD+ S+A+K+L ++I + ++I Sbjct: 423 HGIELNGIQFDTMLESYVLNSTATRHDMDSLARKYLDVGTIKFEDIAGKGAKQLTFNQIQ 482 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 Q +A E++++ LQL +L PKL ++ L+ V++ ++ ++ V+S++E G + +D Sbjct: 483 LQQAGPYAAEDADITLQLHEVLWPKLAAIDSLMSVFQTIELSLVPVLSRIERNGALVSRD 542 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 LL + SAE+ L LE+ ++L+GE FNLSSPKQLG ILF KL+ P KT G T Sbjct: 543 LLNKQSAELGTRLQQLEKEAHELAGEAFNLSSPKQLGHILFDKLELPVIKKTPKGAASTA 602 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + L ++ D P+ + ++E+R LSK+KSTY D LP I++ T R+HT Y A T TGRL Sbjct: 603 EEVLAELAL-DYPLPRILMEYRGLSKLKSTYTDKLPQMISEVTGRIHTSYHQAVTATGRL 661 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIPI+T+ G+K+R+AF++ K+++ADYSQIELRI+AH+++ L + F Sbjct: 662 SSSDPNLQNIPIRTEEGRKVRQAFVARDGYKIVAADYSQIELRIMAHLSQDNGLLKAFAE 721 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIH+ AAE+FG+ +E+VS + RR AK INF +IYG+S F LA Q+ + R EA +YI Sbjct: 722 GKDIHQATAAEVFGLELEQVSTEQRRRAKAINFGLIYGMSAFGLAKQIDVGRHEAQEYID 781 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF R+PG+ +Y++ T+ + GYVET++GRR++ EIN+ R ER AINAP+Q Sbjct: 782 TYFSRYPGVRDYMDNTRADAAERGYVETLYGRRLYLPEINASNGMRRQAAERTAINAPMQ 841 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI ++AM+ V + L + + +M++Q+HDELVFEV E + +V S+ Sbjct: 842 GTAADIIKKAMVDVDRWLLESDVDGQMIMQVHDELVFEVAEPSL----DYLVSSVNDLMS 897 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 + L VPL V++ + +NW E Sbjct: 898 GAVVLDVPLIVDVGIGSNWDE 918 >gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] Length = 950 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 369/985 (37%), Positives = 547/985 (55%), Gaps = 74/985 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRAF+A P L+ +G P A+ G NML L+ + SH AV Sbjct: 24 ENPLVLVDGSSYLYRAFHAFPPLTNS-NGEPTGAMYGVLNMLKSLISQVQP----SHIAV 78 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 79 VFDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGT 138 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV L +T+ +D VI+K+GIPPE ++ Sbjct: 139 LARQASQNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYL 198 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 199 ALMGDSSDNIPGVSGVGEKTALRLLQGIGSMAQIYANLDKVAELPIRGAKKLGEKLLAEK 258 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS L ++TDV + + L L D + LI + EF + + V Sbjct: 259 DMADLSYALATIKTDVALAFSPQELALGDSDNDALIEYFGRYEFKRWLGEV--------- 309 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQ-KLFLERL 355 +N T + T T Q+ KIN Q TP K + Sbjct: 310 --------MNGTNS------------VTQPT--------QSVKINPYQATPVVKTDESAV 341 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + ++ I+ Y I+ D+ +WV+KL + TD +D + + ++ + Sbjct: 342 ENSVKFKIDRSRYENILTEADLARWVEKLSAEKLIAVDTETDGLDYMSANLVGVSFAL-- 399 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + ++ L +H K L+ LK EN + K+G N+K+D + Sbjct: 400 ENGEAAY--------LPLHLDYLGAPKTLEKSTALAALKPILENPNIGKVGQNLKFDMTI 451 Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 R GI +RG E D ML+SY LDS GR H++ +A+++L + ++I K+ + Sbjct: 452 FARNGIELRGIEFDTMLLSYTLDSTGR--HNMDDLAKRYLGHQTIGFEDIAGKGKNQLTF 509 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589 ++I Q E+A E+++V ++L +L KL + L+ +Y+ ++ P++ V+S+ME G+ Sbjct: 510 NQIPLEQAGEYAAEDADVTMKLQQVLWGKLQSQPSLVELYQSIELPLLGVLSRMERCGVL 569 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID D L S EI++ L +LE ++L+G+ FNL+S KQL +ILF KL P KT G Sbjct: 570 IDSDALFLQSNEITERLTALEMQAHELAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGA 629 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T LE++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T Sbjct: 630 PSTNEDVLEEL-AYSHELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTA 688 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIPI+ + G++IR+AFI+ K+I+ADYSQIELRI+AH++ L Sbjct: 689 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSNDAGLIN 748 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIHR AAEIFG+ +E+V+ + RR+AK INF +IYG+S F L+ QL I R++A Sbjct: 749 AFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFGLSRQLGISRADAQ 808 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 Y+ YF R+PG+ ++ + + GYVET+FGRR++ EINS + R ER AIN Sbjct: 809 RYMDLYFQRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGAERVAIN 868 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AADI + AMI + + D M++Q+HDELVFEV E+I S +I ME Sbjct: 869 APMQGTAADIIKCAMIKLDEITRDDP-DIHMIMQVHDELVFEVRSEKIAFFSDLIKQHME 927 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V++ V NW E Sbjct: 928 AAA----ELVVPLIVDVGVGENWDE 948 >gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi] gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 928 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 358/982 (36%), Positives = 551/982 (56%), Gaps = 72/982 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+ L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P T + I+ S S+ + ++ E Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +Y I++ ++ W++KL+ +F TD++D + + ++ + ++ Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+ + L LK E+E K+G N+KYD+ VL Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++ +WL + T ++I K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQLMENC 907 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VPL V + NW + Sbjct: 908 ---TRIDVPLLVEVGSGENWDQ 926 >gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906] gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906] Length = 949 Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust. Identities = 364/991 (36%), Positives = 565/991 (57%), Gaps = 86/991 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN LVDGSS++YRA++A P L+ G P A+ G NML L+ + SH AV Sbjct: 23 ENPFILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLIIQYK----PSHVAV 77 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E+Y +YK+NRP +P+ L Q+ + QA G+P + I G EADD+I T Sbjct: 78 VFDAKGKTFRDELYEEYKSNRPPMPDDLREQIEPLHEMVQAMGLPLLSITGVEADDVIGT 137 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +G V I + DKD+ QLV+P L +T+ + + V +K+G+PPE ++ Sbjct: 138 LALKAASDGRNVLISTGDKDMAQLVTPNITLINTMTNVILGPDEVKEKYGVPPELIIDFL 197 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G+LE+I +I K ++E+ Sbjct: 198 ALMGDSSDNIPGVPGVGEKTALGLLQGLGSLEDIYQQLDKIATLSFRGAKTLGAKMVEHE 257 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A+LS +L ++TDV + + L++ + N +L+ EF + I+ + Sbjct: 258 KVAKLSYQLATIKTDVALDKTFDDLVVNEPNLDKLLEMFTRYEFKRWISDL--------- 308 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +N G + + +++ ++ +Q + N Sbjct: 309 ------------QNGGWLAQRSSRKAPVPYSAEVATPKEQPAADN--------------- 341 Query: 358 LSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 +P I+ ++Y I+ + + +WV+ L+ + +F TD+++ ++ I + Sbjct: 342 ---FPVISQENYESILTHESLMRWVEVLKKAPAFAFDTETDSLNNIDARLIGL------- 391 Query: 417 KDDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 SF VE +I L H D+ + E+L+ LK E++ LKIG N+K+D+ Sbjct: 392 ----SFAVEPGKAAYIPLR-HDYLDAP-EQLPVDEVLTALKPILEDKTILKIGQNLKFDR 445 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 ++ GI + G + D ML SYVL+S S HD+ ++A+K L++ T +EI K + Sbjct: 446 GIMENEGIELNGIYFDTMLESYVLNSVSSRHDMDTLAEKHLNHKTTTFEEIAGKGKGQLT 505 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I Q +A E++++ L L L P++ + L HVY ++ P++ V+S+ME G+ Sbjct: 506 FNQIEVEQATLYAAEDADITLLLHQALYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGV 565 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ID +L S EI++ L +E+ + L+G++FNLSSPKQL +ILF KL P KT G Sbjct: 566 LIDAQVLAMQSQEITQRLAEIEKETFALAGQEFNLSSPKQLQEILFEKLNLPIIKKTPKG 625 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + LE + + + + ILE R L+K+KSTY D LP +N +T+RVHT Y A T Sbjct: 626 APSTNEEVLEAL-AHSHELPRLILEHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVT 684 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+AFI K+++ADYSQIELRI+AH+++ L Sbjct: 685 ATGRLSSRDPNLQNIPVRNEEGRRIRQAFIVRDGFKIVAADYSQIELRIMAHLSQDKGLL 744 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR A+E+FG+ +++V+ + RR AK INF +IYG+S F L+ Q+ + R EA Sbjct: 745 DAFAQGKDIHRATASEVFGIPLDEVTAEQRRSAKAINFGLIYGMSAFGLSQQIGVERKEA 804 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 Y+ YF R+PG+ +Y+E+T+ Q GYVET+ GRR++ EINS + R +ER AI Sbjct: 805 QRYMDLYFERYPGVLDYMERTRKQASQQGYVETLDGRRLYLPEINSKNAIRRKASEREAI 864 Query: 889 NAPIQGSAADITRRAMISV-----HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 NAP+QG+AADI ++AMI+V H+ +D M++Q+HDELVFEV E + A+ + Sbjct: 865 NAPMQGTAADIIKKAMIAVDNWICHECPDD----VHMIMQVHDELVFEVRESYLEKANAM 920 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I ME + + L +PLKV + V NNW E Sbjct: 921 IHKLMESS----MELAIPLKVEVGVGNNWDE 947 >gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145] gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145] Length = 920 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 354/973 (36%), Positives = 547/973 (56%), Gaps = 67/973 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 LVDGS F++RAF+A P L+ GL NAI G + + KL++ ++ +H AVIFD P Sbjct: 6 LVDGSYFLFRAFHALPPLTTS-TGLHTNAIRGAISAIQKLMRRTQP----THMAVIFDTP 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR+E+ P YK +RP +P L Q+P + +A GIP + G EADDII T A Sbjct: 61 EPTFRHELSPIYKGDRPSMPTELSEQIPYLHALIRALGIPLHTLPGAEADDIIGTLAKRA 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 E G V I + DKD+ QLV+ L D+ KE+ +D++ V +K+G+ P +++ L GD Sbjct: 121 EAMGHQVLISTGDKDMAQLVTEKVTLEDSFKEKPLDVDGVFEKFGVWPNQIIDYLTLMGD 180 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248 + D I G+PG+G KTAA LL EYG++ IL N +IK K +NI E+ + L +L Sbjct: 181 ASDGIMGVPGVGAKTAAKLLTEYGSIGGILENVDKIK-GKVGQNIKEHVDGIALDHQLAS 239 Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308 + D+ + + L L + N L LEF + + + + +N + IN Sbjct: 240 IVIDLDLNFGYDDLKLGEPNVETLRHLYTELEFRNQLQSLDHPNNPNNSNYQQAAKSINA 299 Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368 K + ++ ++ +S DQ + +Y Sbjct: 300 ---KAVTAPEPLEDHASVTSS-----DDQ-------------------------LGQATY 326 Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428 +++ +D ++L T +F T ++D ++ + +++ F + + Sbjct: 327 HTVLSQQDWDTLFERLSTEKRFAFDTETTSLDYRIAQIVGFSVA---------FDAQNAY 377 Query: 429 IDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 V + D G L +E IL+ +K E+E KIGH++KYD VL +GI + G Sbjct: 378 Y---VPLAHDYEGAPEQLNREVILAQIKPILEDESVKKIGHHLKYDAHVLENHGIHLAGW 434 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 + D ML SYVL+S + H + +A+ +LS+ T +++ ++I +A Sbjct: 435 YFDTMLASYVLNSVATRHGMDDVARLYLSHLTTTYEQVAGKGAKQKTFNQIPLETAAHYA 494 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V +L+ +L KL +L+++ ++ P+ V++QME GI++D L Q+ E Sbjct: 495 AEDAHVTYRLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGE 554 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 S + +LE I +++GE FN+SSPKQ+G++LF KL G KT TGQ+ T+ LE+I Sbjct: 555 FSNTMQNLENQIMEIAGESFNVSSPKQVGEVLFEKLGLKGGKKTTTGQYSTSESVLEKI- 613 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 ++PI + ILE+R LSK+KSTY D L N T RVHT Y A T TGRL+S +PNLQ Sbjct: 614 --EHPIAQLILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQ 671 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+ ++G++IR+AF++P + L++ADYSQIELR++AH+++ L F + D+HR Sbjct: 672 NIPIRAEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEALLDAFIHGQDVHRRT 731 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G+ +E V+ RR AK +NF ++YG+S F L QL R E+ DYIK+YFHR+PG Sbjct: 732 AAEVLGIALEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQDYIKQYFHRYPG 791 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I++Y+++T+ + G+VET+ GRR++ +I++ +R ERAAINAP+QGSAADI + Sbjct: 792 IYDYMQRTRQVALEQGFVETLLGRRLYTPDIDARNMMVRKAAERAAINAPLQGSAADIIK 851 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI V K L K KMLLQ+HDELVFEV E+ + + M+ + + VP Sbjct: 852 MAMIEVDKMLP--KDQAKMLLQVHDELVFEVDEDIADELAPKLAEVMQSV----LQISVP 905 Query: 962 LKVNIKVSNNWQE 974 L V + NW E Sbjct: 906 LVVEVGKGKNWDE 918 >gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 957 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 368/1002 (36%), Positives = 557/1002 (55%), Gaps = 83/1002 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ K +G P A+ G NML L+ SH AV Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A GIP I I+G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A G V I + DKD+ QLV+ L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+ G+G KTA LLQ G+L+ I N ++ K + Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS L ++TDV + + E L+++ L+ EF + +N V + A Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N PV T+N E +I + + + + + +EQT K+ ++R Sbjct: 296 N--PV------TQNS----EEKIPNN-------YQATASVPQAVETEQTFAKVEIDR--- 333 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS----- 412 Y + + +Q W++K+ + + TD +D+ + + ++ Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385 Query: 413 ------------TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460 TL+ + F + + TS + K L+ LK EN Sbjct: 386 ACYIPLMHKEQVTLEPQQSDLFAEQA---EAETTTSFELAKKQLNLTACLTELKPLLENA 442 Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR- 517 KIG NIKYD + +G+ + G D ML SY L+S GR H++ +A ++L + Sbjct: 443 DVKKIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTI 500 Query: 518 --KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERL 572 +EI K+ + DKI+ ++A E+++V ++L +L P+L EK L+ ++ + Sbjct: 501 EFEEIAGKGKNQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPEL--EKAPTLVKLFNEI 558 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 + P+++V+S++E G+ ID + L SAEI + L LE+ ++ +GE FNL+S KQL +I Sbjct: 559 EMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEI 618 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 LFTKL P KT G T + L+++ + + K ++E R LSK+KSTY D LP I Sbjct: 619 LFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMI 678 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752 N +T RVHT Y A T TGRL+S +PNLQNIPI+ + G++IR+AFI+ K+++ADYSQ Sbjct: 679 NPKTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQ 738 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELRI+AH+A + F DIHR AAEIFG+ +++V+ + RR AK INF +IYG+ Sbjct: 739 IELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGM 798 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S F L+ QL I R++A Y++RYF R+P + +++ + + GYVET+FGRR++ EI Sbjct: 799 SEFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEI 858 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 S + R ER AINAP+QG+AADI + AMI + K++ + KM++Q+HDELVFEV Sbjct: 859 KSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEV 917 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EE + SQ+I MEKA I L+VPL + V +NW E Sbjct: 918 KEELVEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955 >gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1] gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1] Length = 916 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 354/984 (35%), Positives = 555/984 (56%), Gaps = 86/984 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS++YRAF+A P + DG P NA G +M+ L+ K S +IFD Sbjct: 1 MVLVDGSSYLYRAFHAIPPM-HTSDGQPTNATRGVISMIRSLI----KTYPDSPMVIIFD 55 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EIY +YKA+RP +P+ L PQ+ + +A G+P + + G EADD+I T Sbjct: 56 AKGKTFRDEIYSEYKAHRPPMPDDLRPQIEPIHRVVEAMGLPLVIVDGVEADDVIGTIAK 115 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 ++G V + + DKD+ QLV+ L +T+ +DI+ V K+GIPPE ++ AL Sbjct: 116 QVGEQGREVVVSTGDKDMAQLVTDKVTLVNTMNNTVMDIQGVKDKFGIPPELIIDYLALM 175 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAETA 240 GD +DNIPG+PG+G KTA LLQ G++++I I K ++ + + E A Sbjct: 176 GDKVDNIPGVPGVGEKTALALLQGLGSIKDIYTRLDEIADLGFRGSKTMKQKMEDNKEMA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS L ++ DV + + L + + +L + LEF + Sbjct: 236 ELSYTLATIKCDVELPFEPQELKNGEADKEKLREWFTKLEFKTWL--------------- 280 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 +++D+ +++T+ SD +SEQ Q + Sbjct: 281 -----------------SDLDKAPSVETA-----SDTVGNASSEQNGQ----------VE 308 Query: 361 YPINND---SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 P+ +D +Y +++ +W++K++ +F T +++ ++ + ++ S + Sbjct: 309 IPVKSDLEANYETVLDKASFNKWLEKIQAAELVAFDTETTSLNYMAAELVGLSFSV--EA 366 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLV 475 + ++ V + D G L ++ +L LK + E++ K+G ++KYD V Sbjct: 367 GEAAY----------VPVAHDYEGAPEQLDRDWVLEQLKPWLEDDSKAKVGQHLKYDANV 416 Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 L+ Y I++RG D ML SYV +S S HD+ ++A K+L +T ++I + Sbjct: 417 LNNYQITLRGIAYDTMLESYVYNSVSSRHDMNTLASKFLGHTCVSFEDIAGKGAKQKTFN 476 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 +I +A E++++ L+L + PK+ +L+ +++ ++ P+I V+++ME TG I Sbjct: 477 QIDLEVAAFYAAEDADITLRLHQAIWPKIETTPELVSIFKDIECPLIPVLAKMEQTGALI 536 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D +LL S+EI+ L LE ++ +GE FNLSSPKQL ILF K P KT GQ Sbjct: 537 DPELLHAQSSEIAAKLQELEIKAHEEAGESFNLSSPKQLQVILFEKQGLPVIKKTPKGQ- 595 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 +TA+ + Q D + + I+E R LSK+KSTY D LP I K T R+HT Y A T T Sbjct: 596 PSTAEPILQELAQDYELPRLIMEHRSLSKLKSTYTDKLPEMIQK-TGRIHTSYHQAITAT 654 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIPI++ G++IR+AFI+P KL++ADYSQ+ELRI+AH+++ + L Sbjct: 655 GRLSSTDPNLQNIPIRSAEGRRIRQAFIAPKGYKLVAADYSQVELRIMAHLSQDSGLLDA 714 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F D+H+ AAE+F V++++V+ + RR AK INF +IYG+S F LA QL I R EA Sbjct: 715 FTKDADVHKATAAEVFEVSLDEVTTEQRRRAKAINFGLIYGMSAFGLAKQLGIGRPEAGK 774 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YIKRYF R+PG+ +Y+E T+ ++ GYVETI+GRR++ +I + + +R ER AINA Sbjct: 775 YIKRYFERYPGVQQYMENTREGAKEKGYVETIYGRRLYLPDIKAKNAMMRQAAERTAINA 834 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QGSAADI +RAMI +H L+ L KM++Q+HDEL+FEV E+++ A + IV M+ Sbjct: 835 PMQGSAADIIKRAMIKMHDWLQGTDLDVKMIMQVHDELIFEVAEKDLEAAQKKIVDIMQN 894 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 + + VPL V V +NW E Sbjct: 895 SS----KIDVPLLVEAGVGDNWDE 914 >gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] Length = 927 Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust. Identities = 350/989 (35%), Positives = 539/989 (54%), Gaps = 75/989 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M K L LVDGSS++YRAF+A P L R G P + G + +LQ R++ A + Sbjct: 1 MSKPKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPASPATGAIRGMINMLQALRRDYPADY 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A +FD TFR+ +YP+YKA+R +P+ L Q+ + + G P + + G EADD+ Sbjct: 60 AACVFDASGPTFRDTLYPEYKAHRAPMPDDLRAQIEPIHQVVRLMGWPVVCVPGVEADDV 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T A ++G V + S DKDL QLV + DT+ ++ D+ V ++G+PP MV Sbjct: 120 IGTLAACAARQGIEVIVSSGDKDLSQLVDEHITIIDTMSGKRRDVAGVTAEFGVPPTLMV 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 Q L GD++DN+PG+P +G KTAA L EYG+L+ +L A IK EN+ E Sbjct: 180 DYQTLVGDAVDNVPGVPKVGPKTAAKWLNEYGSLDGLLARAGEIKGVAG-ENLRGALEWL 238 Query: 241 RLSRKLVMLRTDVPIT-----IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 R+LV +RTD + +P L + + + L F +A F Sbjct: 239 PKGRELVTIRTDCDLAGHVDGLPDLAGVAMGASDNAALRDFYQAYGF------------- 285 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 KG+A + D + + ++L + + + +P+ F+ Sbjct: 286 -----------------KGLARALQDD----LPANATATLPGASGDLFA--SPETTFVAE 322 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 + + +Y ++ +D +W+++++ + T ++D ++ + + Sbjct: 323 AAQGREV-----AYDTVLTWEDFDRWLERIQGAELVALDTETTSLDELRAEIVGL----- 372 Query: 415 DQKDDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471 SF VE +I L+ H+ D+ + L +L LK + E+ K+G ++KY Sbjct: 373 ------SFSVEPGAAAYIPLA-HSGPDAPEQLPLDA-VLERLKPWLEDGSRAKLGQHVKY 424 Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSS 527 D+ V + I +RG+ D ML SYVL+ H++AS+A++ T +++ Sbjct: 425 DRHVFANHDIGVRGYVHDTMLQSYVLEV-HKPHNLASLAERHTGRTGISYEDLCGKGAKQ 483 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 IP ++ Q ++ E+S+ L + +L P + ++ L L+ +V+ ++E G Sbjct: 484 IPFAQVPVEQAAAYSCEDSDQTLDVHRVLWPLIEADEKLRAIYALEMESSEVLFRIERNG 543 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + ID L+Q S ++ + +L LE+ YD++G+ FNL SPKQLG+I F KL P KT T Sbjct: 544 VLIDPATLQQQSHDLGQRILKLEQEAYDIAGQPFNLGSPKQLGEIFFDKLGLPVVKKTAT 603 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + LE++ D P+ ILE R LSK+K TY D L + RT RVHT Y+ A Sbjct: 604 GARSTDEEVLEKL-AEDYPLPAKILEHRSLSKLKGTYTDKLSQLADPRTGRVHTHYAQAV 662 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 +TGRL+S EPNLQNIPI+T G+++R AF++PP + + SADYSQIELRI+AH++ L Sbjct: 663 AVTGRLSSNEPNLQNIPIRTSEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGDDAL 722 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F LD+HR AAE+FGV +++VS + RR+AK INF +IYG+S F LA L I Sbjct: 723 LRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIDNKA 782 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 AA YI RYF R+PG+ +Y+++TK + GYVET+FGRR++ EINSP R ERAA Sbjct: 783 AAAYIDRYFQRYPGVKQYMDETKASAKARGYVETVFGRRLYLPEINSPNGPRRGAAERAA 842 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AAD+ ++AM++V L+ K M++Q+HDELVFE+PEEE I Sbjct: 843 INAPMQGTAADLIKKAMVAVQAVLDADKPQVLMIMQVHDELVFELPEEEAGWLRTEIPRL 902 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976 M L+VPL + NW++ + Sbjct: 903 MAGVA----ELKVPLLAEVGTGPNWEKAH 927 >gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] Length = 905 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 358/976 (36%), Positives = 539/976 (55%), Gaps = 84/976 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P R + P A+ G NML +L K+ A + A +FD Sbjct: 4 LLLVDGSSYLYRAFHALPDF-RNRNNEPTGAVYGVLNMLRRL----HKDYQADYSACVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E+Y +YKANRP +P+ L Q+ + A G P + ++G EADD+I T Sbjct: 59 AKGKTFRDELYAEYKANRPPMPDELAAQIAPLLECINAMGWPMLSVEGVEADDVIGTLVK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE E I + DKD+ QLV+P L +T+ E +D V+ ++G+PPE+M+ AL Sbjct: 119 QAEGENMRCIISTGDKDIAQLVNPQVTLVNTMTNEMLDEAGVLGRFGVPPERMLDYLALV 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DNIPG+ +G KTA L +YG L+N+L++A I EN+ SR+L Sbjct: 179 GDAVDNIPGVAKVGPKTAVKWLNQYGTLDNLLVHAGEIGGVVG-ENLRNALGWLSRSRQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + ++ DV + + L L + + +L + L+F + + Sbjct: 238 LSIKCDVSLPVSLHDLGPQPPDMVKLAELYERLDFKSWLRELQ----------------- 280 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + SQ +D S+ F L Q Sbjct: 281 --------------------QESQAEGAADALSRG---------FAPAGSNLVQA----- 306 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425 Y I+ + + +W+ ++ AS T +D ++ + I SF VE Sbjct: 307 DYQTILTPEQLDEWMMRIAAAPLASLDTETTGLDPMRAELVGI-----------SFSVEP 355 Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 +I L + + +L LK + + K+G N+K+D+ V +GI + Sbjct: 356 HHGAYIPLGHRYT--GVPRQLPLDFVLEKLKPWLTDPSAPKLGQNLKFDRHVFANHGIGL 413 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQ 539 +G D +L SYV +S R HD+ ++A + L + T E+ + I +++ + Sbjct: 414 KGIVHDTLLQSYVFESHRP-HDMDNLALRHLGIKTITYDEVTGKGAARIGFEQVDIERAA 472 Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++A E+++V LQL L ++ + KL H+Y L+ P++DV+ +ME G+ +D LL+ Sbjct: 473 QYAAEDADVTLQLHQHLYAEVGKDAKLDHIYRTLEMPVMDVLFEMERNGVLLDIKLLETQ 532 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S E+ + +L+LEE ++G FNL+SPKQ+ +ILF +LK P KT +G +T +D+ Sbjct: 533 SRELGEKMLALEERACTIAGLPFNLNSPKQIQEILFDRLKLPVMKKTPSGV-PSTDEDVL 591 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 Q D P+ + +L++R L+K+KSTY D LP ++ T RVHT Y+ A +TGRLAS EP Sbjct: 592 QKLALDYPLARALLDYRGLAKLKSTYTDKLPRMVHPVTGRVHTNYAQAVAVTGRLASNEP 651 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+T G++IR AFI+P ++ISADYSQIELRI+AHI++ L + F DIH Sbjct: 652 NLQNIPIRTAEGRRIREAFIAPSGYRIISADYSQIELRIMAHISQDAGLLKAFAQGEDIH 711 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R +EIFGV +E V+ + RR+AK INF +IYG+S F LATQL I R+ A Y+ RYF R Sbjct: 712 RATGSEIFGVPLETVNSEQRRYAKIINFGLIYGMSEFGLATQLGIERAAARTYMDRYFSR 771 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ +Y+++T+ R+N YVET+FGRR+ EINS R ERAAINAP+QG+AAD Sbjct: 772 YPGVADYMQRTRKTARENRYVETVFGRRLWLSEINSSNGMRRQAAERAAINAPMQGTAAD 831 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I + AMI VH L H+L +K+++Q+HDELV EVPE EI T + + M L Sbjct: 832 IIKLAMIEVHDWLRRHELRSKLVMQVHDELVLEVPENEIETIKRELPLLMGNVA----QL 887 Query: 959 RVPLKVNIKVSNNWQE 974 +VPL V + V NW++ Sbjct: 888 QVPLLVEVGVGPNWEQ 903 >gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957] gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957] Length = 960 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 354/996 (35%), Positives = 557/996 (55%), Gaps = 79/996 (7%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + + L LVDGSS++YRA++A P L R +G P AI G NML KL R + A + Sbjct: 19 ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 73 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 A +FD TFR+E+YP YK +R +P+ L Q+ + A +A G P + + G EADD+I Sbjct: 74 ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILVVDGVEADDVI 133 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T A +EG + + DKDL QLV+ L +T+ E +D V K+G+PPEK+V Sbjct: 134 GTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVQAKFGVPPEKIVD 193 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +L GD++DN+PG+P +G KTA L EYG+L+N++ A IK EN+ + Sbjct: 194 YLSLIGDTVDNVPGVPKVGPKTAVKWLSEYGSLDNVIARAGEIKGVVG-ENLRNTLDWLP 252 Query: 242 LSRKLVMLRTDV---PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 R+L+ ++TD P + L+ + RL F F + R AT Sbjct: 253 KGRELLTVKTDCDLSPDVSSFDALVDGGEDRARLADFFGRYGFKTWL-REATGES----- 306 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS---SLSDQTSKINSEQTPQKLFLERL 355 + T + G A R Q++ + Q S + E P ++ Sbjct: 307 -------LPDTRSVGAA------RKAATPVKQYAPEAAAQQQASLFDVETPPAEV----- 348 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 Y + ++ W++ L+ T ++D ++ + I++S Sbjct: 349 -----------QYETVTTEAQLESWMRLLDASELVCIDTETTSIDPMLAQLVGISLSVQP 397 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNT---LTKE-ILSYLKKFFENEHFLKIGHNIKY 471 + +I ++ H D +G + L++E +L+ ++ + E+E K+G ++KY Sbjct: 398 GR--------ACYIPVA-HRGPDVSGLDAAAQLSREAVLARMRLWLEDEIRSKVGQHLKY 448 Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSS 527 D V +GI++RG D ML SYVL S R+ H + ++A++ L + T +E+ + Sbjct: 449 DAHVFANHGIALRGIAHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGAAQ 507 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586 I D+++ + E+A E++++ L+L L PK+ + KL +VYE+++ P V+ +ME Sbjct: 508 IGFDEVALDRATEYAAEDADITLRLHRALYPKVAEDDKLRYVYEQIEMPTSIVLQKMERN 567 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G+ +D + L + SAE+ LL+LE+ Y L+G+ FNL+SPKQ+G+I FT+LK P KT Sbjct: 568 GVLVDAERLARQSAELGHRLLALEQEAYALAGQPFNLNSPKQIGEIFFTQLKLPVVKKTA 627 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 +G T + L+++ D P+ K +L++R L+K+KSTY D LP +N +T RVHT Y A Sbjct: 628 SGAPSTDEEVLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQA 686 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 + +TGRLAS +PNLQNIP++T+ G++IR AF++P ++SADYSQIELRI+AH++ Sbjct: 687 TAVTGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDG 746 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F D+HR AAE+FGV +V+ + RR+AK INF +IYG+S F LA+ L I R Sbjct: 747 LMRAFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRD 806 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 A YI RYF R+PG+ Y+++T+ + GYVET+FGRR+ +IN R ERA Sbjct: 807 AAKLYIDRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERA 866 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLA--------TKMLLQIHDELVFEVPEEEIT 938 AINAP+QG+AAD+ + +M++V LE A +++++Q+HDELV EVP++E+ Sbjct: 867 AINAPMQGTAADLIKLSMLAVQDWLEGSPNADKPGTPMRSRLVMQVHDELVLEVPQDELA 926 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M +L VPL + V +NW+E Sbjct: 927 RVRERLPELMCGVA----SLSVPLVAEVGVGSNWEE 958 >gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700] gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700] Length = 985 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 369/984 (37%), Positives = 546/984 (55%), Gaps = 74/984 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + SH AV+ Sbjct: 60 NPLVLVDGSSYLYRAFHAFPPLTNSA-GEPTGAMYGVLNMLKSLISQVQP----SHIAVV 114 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 115 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGVEADDVIGTL 174 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A + G V I + DKD+ QLV L +T+ +D VI+K+GIPPE ++ A Sbjct: 175 ACQASQSGQKVLISTGDKDMTQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLA 234 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L + Sbjct: 235 LMGDSSDNIPGVSGVGEKTALGLLQGIGSMAQIYANLDKVAELPIRGAKKLGEKLLAEKD 294 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + L L D N LI + EF + + V Sbjct: 295 MADLSYALATIKTDVALEFSPQDLPLGDSNNDALIEYFGRYEFKRWLGEV---------- 344 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQ-KLFLERLQ 356 +N T + T T Q+ KIN Q TP K ++ Sbjct: 345 -------MNGTNS------------VTQPT--------QSVKINHYQATPAVKTDESAVE 377 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 ++ I+ Y I+ D+ WV+KL + TD +D + + ++ + + Sbjct: 378 NSVKFKIDRSRYENILTETDLTHWVEKLSAEKLIAVDTETDGLDYMSANLVGVSFAL--E 435 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + ++ L +H K L+ LK EN + K+G N+K+D + Sbjct: 436 NGEAAY--------LPLHLDYLGAPKTLEKSTALAALKPILENPNIGKVGQNLKFDMTIF 487 Query: 477 HRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 R GI +RG E D ML+SY LDS GR H++ +A+++L + ++I K+ + + Sbjct: 488 ARNGIELRGIEFDTMLLSYTLDSTGR--HNMDDLAKRYLGHQTIGFEDIAGKGKNQLTFN 545 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590 +I Q E+A E+++V ++L +L KL + L+ +Y+ ++ P++ V+S+ME G+ I Sbjct: 546 QIPLEQAGEYAAEDADVTMKLQQVLWEKLKSQPSLVELYQSIELPLLGVLSRMERCGVLI 605 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D D L S EI++ L +LE ++L+G+ FNL+S KQL +ILF KL P KT G Sbjct: 606 DSDALFLQSNEITERLTALEMQAHELAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAP 665 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + LE++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T T Sbjct: 666 STNEEVLEEL-AYSHELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTAT 724 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIPI+ + G++IR+AFI+ K+I+ADYSQIELRI+AH++ L Sbjct: 725 GRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSNDAGLINA 784 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F DIHR AAE+FG+ +E+V+ + RR+AK INF +IYG+S F L+ QL I R++A Sbjct: 785 FAQGKDIHRSTAAELFGLPLEQVTSEQRRNAKAINFGLIYGMSSFGLSRQLGISRADAQR 844 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ YF R+PG+ ++ + + GYVET+FGRR++ EINS + R ER AINA Sbjct: 845 YMDLYFQRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGAERVAINA 904 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AADI +RAMI + + D M++Q+HDELVFEV E+I S +I ME Sbjct: 905 PMQGTAADIIKRAMIKLDEITRDDP-DIHMIMQVHDELVFEVRSEKIAFFSDLIKQHMEA 963 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V++ V NW E Sbjct: 964 AA----ELVVPLIVDVGVGENWDE 983 >gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] Length = 930 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 363/985 (36%), Positives = 547/985 (55%), Gaps = 72/985 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNGA-GEPTGAMYGVLNMLRSLIMQYQP----SHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + QA G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIAPLHQMVQAMGLPLLVVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AE+ G V I + DKD+ QLV+P L +T+ + + V K+G+PPE ++ Sbjct: 121 LARRAEQAGRHVLISTGDKDMAQLVTPNITLINTMTNTVLGPQEVFDKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+PG+G KTA LLQ G L++I + R+ K +L Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGIGGLQSIYGDIDRVATLSFRGAKTMGAKLLLNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS L ++TDV + + + L ++ + L + + EF + ++ D Sbjct: 241 EKADLSYLLATIKTDVDLALDCDDLAIKPLDSATLHTLFQRYEFKRWLS------DAQDG 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + + T K + E + T T Sbjct: 295 SWLTAAQGMKTKAVKPASEEANLSAVATAAT----------------------------- 325 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ + Y I++ ++ + +L+ +G +F TD++D + + IS D Sbjct: 326 -----LSREGYQTILDEAALEALIARLQHVGCFAFDTETDSLDVLSAN--LVGISCADAP 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + +I L+ H D+ + L +E +L+ L+ E+E K+G N+KYD V+ Sbjct: 379 G------QAYYIPLA-HDYLDAPAQ--LDREWVLARLQPLLEDEKVAKVGQNLKYDIGVM 429 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 R+GI +RG D ML SYVL+S HD+ S+A + L + T +E+ K + ++ Sbjct: 430 ARHGIILRGVAFDTMLESYVLNSVAGRHDMDSLAARHLDHKTITFEEVAGKGKGQLTFNQ 489 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQID 591 I Q E+A E+++V L+L L P L E HV+ +D P++ V+S+ME TG+ ID Sbjct: 490 IPLEQAAEYAAEDADVTLRLHQRLWPMLESEAGPRHVFCDIDMPLVPVLSRMERTGVLID 549 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +L Q S E++ L +LE+ + L+ E FNLSS KQL ILF K + P KT G Sbjct: 550 STILGQHSQELAVRLNALEQQAHTLADEPFNLSSTKQLQSILFDKQQLPILKKTPGGAPS 609 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L ++ + + IL++R L+K+KSTY D LP ++ T RVHT Y A T TG Sbjct: 610 TNEEVLVELAEQGYELPQVILDYRTLAKLKSTYTDKLPQMVSPLTGRVHTSYHQAVTATG 669 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP+++D G++IR+AFI+P K+++ADYSQIELRI+AH++ L + F Sbjct: 670 RLSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSKIVAADYSQIELRIMAHLSGDRGLLEAF 729 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIHR AAE+FG+ +E V+ RR AK INF +IYG+S F LA QL I R+EA Y Sbjct: 730 AAGKDIHRATAAEVFGLPLEAVTADQRRSAKAINFGLIYGMSAFGLARQLNIGRNEAQRY 789 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF R+PG+ Y+E+T+ + GYVET+ GRR++ EIN+ + R ERAAINAP Sbjct: 790 MDLYFERYPGVLAYMERTRQQASEQGYVETLDGRRLYLPEINARNAMRRKAAERAAINAP 849 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG+AADI +RAMI+V L+ + +M++Q+HDELVFEVPE + + ME + Sbjct: 850 MQGTAADIIKRAMIAVDAWLQQSQPQVRMIMQVHDELVFEVPEALVDEVVSHVRTLMEGS 909 Query: 952 CLPKINLRVPLKVNIKVSNNWQEEN 976 + L VPLKV+I NW + + Sbjct: 910 ----LALAVPLKVDIGCGENWDQAH 930 >gi|116053643|ref|YP_793970.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14] gi|115588864|gb|ABJ14879.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14] Length = 913 Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust. Identities = 358/986 (36%), Positives = 540/986 (54%), Gaps = 98/986 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G P A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RKQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ +YKANRP +P+ L Q+ + + +A G+P + ++G EADD+I T Sbjct: 61 AKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + G V I + DKD+ QLV L +T+ ++D++ V +K+G+ PE ++ AL Sbjct: 121 SSAAAGRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENIL---INASRIKQKKRRENILE 235 GD +DNIPG+PG+G KTA LL Y +L+ + I ++ K EN Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEEN--- 237 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E A LS +L ++TDV + + ++ L + LI+ + LEF ++ + Sbjct: 238 -REQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELEFKNWLDDLLREAKEA 296 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 N E I+ E+D D + + F + Sbjct: 297 GENGEAET-----------PIQAEVDYDVVLDQAGFDA---------------------- 323 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 W++KLE +F T ++DA ++ + ++ + + Sbjct: 324 ------------------------WLKKLEEAELIAFDTETTSIDAQQAQVVGVSFA-VK 358 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + + ++ + +D+ +L LK E+ LK+G + KYD V Sbjct: 359 EGEAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409 Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 L I++RG D ML SYVLDS + HD+ S+A K+L ++ ++I + Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588 D+I+ Q +A E+++V L+L L KL + L V ++ P++ V++++E G Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D +LL S E+ + +++LE YDL+G++FNL SPKQLG IL+ KL P +KT TG Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q T L ++ D + K I+++R +SK+KSTY D LP IN RT R+HT Y A Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 649 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+AK L Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F + LD+HR AAE+FGV +E VS RR AK INF +IYG+S F LA Q+ + R EA Sbjct: 710 DAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI RYF R+PG+ Y+E+T+ + G+VET+FGRR++ EI+S ++R ER AI Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI +RAM++V L++ L +++LQ+HDELV EV E+ + + I M Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREDLVEQVREGIRPLM 889 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V V +NW E Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDE 911 >gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] Length = 933 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 369/984 (37%), Positives = 541/984 (54%), Gaps = 73/984 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSA-GEPTGAMYGVLNMLKSLISQVQP----SHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + + G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A K G V I + DKD+ QLV L +T+ +D VI+K+GIPPE ++ A Sbjct: 122 ASQASKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N +I + KK E +L Sbjct: 182 LMGDSSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKIAELPIRGAKKLGEKLLAEKA 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + L + D N LI + EF + + V Sbjct: 242 MADLSYALATIKTDVELAFSPHELTIGDSNNDALIEYFGRYEFKRWLGEV---------- 291 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQ-KLFLERLQ 356 ++ T+ S ++Q KIN Q TP K+ ++ Sbjct: 292 ---------------------MNGAGTVTQS-----AEQPVKINHYQATPAAKIDESAVE 325 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 ++ I+ Y I+ D+ +W++KL + TD +D + + I+ + + Sbjct: 326 NAVKFHIDRSRYENILTEADLARWLEKLNAAKLIAVDTETDGLDYMSANLVGISFAL--E 383 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + ++ L +H K LS LK EN + KIG N+K+D + Sbjct: 384 NGEAAY--------LPLHLDYLGAPKTLEKNTALSALKPILENPNIGKIGQNLKFDMTIF 435 Query: 477 HRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531 R GI ++G E D ML+SY LDS GR H++ +A+++L + + ++I K+ + + Sbjct: 436 ARNGIDLQGIEFDTMLLSYTLDSTGR--HNMDDLAKRYLGHQTISFEDIAGKGKNQLTFN 493 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590 +I Q E+A E+++V ++L +L KL + L+ +Y+ ++ P++ V+S+ME G+ I Sbjct: 494 QIPLEQAGEYAAEDADVTMKLQQVLWEKLEPQPGLVALYQSIELPLLSVLSRMERCGVLI 553 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D D L S EI++ L +LE Y L+G+ FNL+S KQL +ILF KL P KT G Sbjct: 554 DSDALFLQSNEITERLTALEMQAYALAGQPFNLASTKQLQEILFGKLGLPVLQKTPKGAP 613 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + LE++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T T Sbjct: 614 STNEEVLEEL-AYSHELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTAT 672 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIPI+ + G++IR+AFI+ K+I+ADYSQIELRI+AH++ L Sbjct: 673 GRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSNDQGLINA 732 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F DIHR AAEIFG+ +E+V+ + RR+AK INF +IYG+S F +L I R++A Sbjct: 733 FAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFVFPARLGISRADAQR 792 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ YF R+P + +I + + GYVET+FGRR++ EINS + R ER AINA Sbjct: 793 YMDLYFQRYPNVQTFIHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGTERVAINA 852 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AADI +RAMI + D M++Q+HDELVFEV E+I S +I ME Sbjct: 853 PMQGTAADIIKRAMIKLDGITRDDP-DIHMIMQVHDELVFEVRSEKIAFFSDLIKQHMEA 911 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V++ V NW E Sbjct: 912 AA----ELVVPLIVDVGVGENWDE 931 >gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23] gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23] gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514] Length = 923 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 355/980 (36%), Positives = 537/980 (54%), Gaps = 70/980 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P LS G P A+ G NML L+ + A + D Sbjct: 4 LVLIDGSSYLYRAFHALPPLSNAA-GEPTGALFGVVNMLRTTLKER-----PDYAAFVID 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+ + +YK +RP +P+ L Q+ +R A GI + I G EADD+I T Sbjct: 58 APGKTFRDALDSEYKMHRPPMPDDLRMQVEPMRGIVHALGIDILCIDGVEADDVIGTLAL 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-HVIKKWGIPPEKMVCLQAL 185 A +G AVTI + DKD QLV P L +T+ ++D VI K+G+ P++++ AL Sbjct: 118 AAVADGIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLAL 177 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS+DN+PG+ G KTAA L EYG+L+ ++ NA +IK K +N+ L+R Sbjct: 178 MGDSVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKGKIG-DNLRVVLPRLLLNRA 236 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 L+ ++TDV + + L L + + L F + FT+ + + D ++ V + Sbjct: 237 LITIKTDVVLEKRPQDLALRERDTEALRDFYQRYGFTQALK------ELDGGSVAVTVAE 290 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 + D ++ + S S + Sbjct: 291 QEPGRGRNAGFHVAPDASVAMEINPALSASGE---------------------------- 322 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 Y I + +Q W+ +L G + TD++D + I + SF E Sbjct: 323 --YETIFTIEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGL-----------SFASE 369 Query: 426 TIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 + + D G L+ L+ E+ K+G + KYD VL RYGI + Sbjct: 370 -VGCAAYLPFGHDYPGAPVQLDRGQALALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVL 428 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY-TRK--EILKSRKSSIPIDKISDSQVQ 539 G+ +D +L S+VL SG + HD+ ++A++ L Y T K +++ IP + + Sbjct: 429 AGYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPFSHVGVQEAT 488 Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++A E++++ L+L +L PKL+ E +L VY ++ P++ V+ ++E G+QID + L + Sbjct: 489 QYAAEDADITLRLHCVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQ 548 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 SA++S+ ++ ++ DL+G FNL SPKQL +LF +LK P KT GQ T + LE Sbjct: 549 SADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALE 608 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 I + + + ILE+R L+K+++TY + LP I+ T RVHT Y A TGRL+S +P Sbjct: 609 AI-VDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATGRLSSSDP 667 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+TD G++IRRAF++P +KLI+ DYSQIELRI+AH++ L FE+ +D+H Sbjct: 668 NLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVH 727 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 +AAE+FG I++V+P RR AK INF +IYG+S F LA QL I R EA DYI YF R Sbjct: 728 CAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDR 787 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 F G+ +++E T+ R GYVET+FGRR++ + I S + R ERAAINAP+QG+AAD Sbjct: 788 FAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAAD 847 Query: 899 ITRRAMISVHK--SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 I +RAM++V + H+ M+LQ+HDELVFE E + T +VH + Sbjct: 848 IIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPT----LVHEVSARMAAAA 903 Query: 957 NLRVPLKVNIKVSNNWQEEN 976 LRVPL V++ V ++W E + Sbjct: 904 QLRVPLVVDVGVGHHWDEAH 923 >gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58] gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58] Length = 913 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 358/986 (36%), Positives = 540/986 (54%), Gaps = 98/986 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G P A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RKQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ +YKANRP +P+ L Q+ + + +A G+P + ++G EADD+I T Sbjct: 61 AKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ ++D++ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENI---LINASRIKQKKRRENILE 235 GD +DNIPG+PG+G KTA LL Y +L+ + I ++ K EN Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEEN--- 237 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E A LS +L ++TDV + + ++ L ++ LI+ + LEF ++ + Sbjct: 238 -REQAFLSYQLATIKTDVELDVEIDKLYPDEPQREALIALYRELEFKNWLDDLLREAKEA 296 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 N E I+ E+D D + + F + Sbjct: 297 GENGEAET-----------PIQAEVDYDVVLDQAGFDA---------------------- 323 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 W++KLE +F T ++DA ++ + ++ + + Sbjct: 324 ------------------------WLKKLEEAELIAFDTETTSIDAQQAQVVGVSFA-VK 358 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + + ++ + +D+ +L LK E+ LK+G + KYD V Sbjct: 359 EGEAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409 Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 L I++RG D ML SYVLDS + HD+ S+A K+L ++ ++I + Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588 D+I+ Q +A E+++V L+L L KL + L V ++ P++ V++++E G Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D +LL S E+ + +++LE YDL+G++FNL SPKQLG IL+ KL P +KT TG Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q T L ++ D + K I+++R +SK+KSTY D LP IN RT R+HT Y A Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 649 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+AK L Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F + LD+HR AAE+FGV +E VS RR AK INF +IYG+S F LA Q+ + R EA Sbjct: 710 DAFRHGLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI RYF R+PG+ Y+E+T+ + G+VET+FGRR++ EI+S ++R ER AI Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI +RAM++V L++ L +++LQ+HDELV EV EE + + I M Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREELVEQVCEGIRPLM 889 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V V +NW E Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDE 911 >gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14] gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14] Length = 923 Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust. Identities = 348/983 (35%), Positives = 540/983 (54%), Gaps = 79/983 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRA++A P + DG P AI G NML +L+ E H AV Sbjct: 6 ENPLILIDGSSYLYRAYHAAPNFTNS-DGEPTGAIYGVVNMLRSMLRQFSTE----HIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 IFDAKGKTFRDDMYPEYKANRPPMPDDLRSQIEPLHAVIKAMGLPLIAISGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + A ++G V I + DKD+ QLV L +T+ + +D V+ K+GI PE ++ Sbjct: 121 LSTQASQQGMPVLISTGDKDMAQLVDQNVTLINTMTDVVMDPAGVVDKFGIGPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LL G L+ + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGEKTAKALLTGIGGLDALYDNLDDIAALGFRGSKTMAKKLIDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A +S KL ++ DV + + + L + L L+F + + + Sbjct: 241 EAAYMSYKLATIKLDVELDVTPDELRKGVPDTDALTELFGKLQFRRWLTEM--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++ ++ + +A E D T K + Sbjct: 292 --------LDGSDGRIVADEKSGDVPTEKKAVAPT------------------------- 318 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y +++ + W+++L+ + +F TD +D + + ++ + +++ Sbjct: 319 -----IDRSGYETVLDKESFATWLEQLKAAKAFAFDTETDGLDYMTANVVGVSFA-IEEG 372 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L LK E+ KIG N+K+D ++ Sbjct: 373 KAAYVPVAHDYLDAPAQLDRDW---------VLEQLKPLLEDPKQAKIGQNLKFDASIVA 423 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RYGI M+G D ML SYV +S HD+ S+A ++L + + +E+ K + ++I Sbjct: 424 RYGIEMQGIVFDTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLTFNQI 483 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q +A E++++ L+L L PK+ + KL HV+E ++ P++ V+S+ME TG+ +D Sbjct: 484 DLEQAGPYAAEDADITLRLHNTLYPKVEADDKLNHVFETIEMPLVPVLSRMERTGVYVDS 543 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 LL S EI+ L +E+ ++++ ++FNLSSPKQL ILF K+ P KT +G T Sbjct: 544 MLLGAQSTEIAARLDEIEKKAFEIAEQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPST 603 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K +LE+R L+K+KSTY D LP +N T RVHT Y A T TGR Sbjct: 604 NEEVLQELAL-DYPLPKLLLEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGR 662 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AF++ K+++ DYSQIELRI+AH++ L F Sbjct: 663 LSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFR 722 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH AAEI ++IE+VS + RR AK INF +IYG+S F LA QL + R+EA +Y+ Sbjct: 723 HGKDIHAATAAEILSLDIEEVSSEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQNYM 782 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E T+N + GYVET+FGRR++ +I S R ERAAINAP+ Sbjct: 783 NVYFERYPGVLEYMESTRNAASEQGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPM 842 Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI + AMI+V ++ ++L+Q+HDELVFEV E + + + ME+A Sbjct: 843 QGTAADIIKLAMIAVDGWVQQQPEGNVRLLMQVHDELVFEVKESALEAVTASVKALMEQA 902 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL + +NW + Sbjct: 903 A----TLDVPLIADTGYGDNWDQ 921 >gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25] gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25] gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25] gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25] Length = 928 Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust. Identities = 361/983 (36%), Positives = 546/983 (55%), Gaps = 74/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRAF+A P + + +P NA+ G NML +++ E IA V Sbjct: 6 ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASERIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++Y +YKANRP +P+ L Q+ + +A G+P I + G EADD+I T Sbjct: 61 VFDAKGKTFRDDMYAEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + A ++G V I + DKD+ QLV L +T+ +D E V++K+GIPPE ++ Sbjct: 121 LAHQASQKGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLIDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++ DV + E L+ + N L+ L F +N + + + Sbjct: 241 ENAMLSYELATIKLDVELEETPESLLKAEPNKDELVKLYGQLTFKSWLNEL---LEGGSG 297 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++E V L + S Q S ++E + ++R Q Sbjct: 298 SVEAVEL----------------------------AGSAQASASHAEMETSAVTIDRSQ- 328 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I++ + W+ KL+T +F TD +D + + ++ + +D+ Sbjct: 329 ----------YETILDEETFNAWLDKLQTAELFAFDTETDNLDYMLANLVGLSFA-VDEG 377 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L LK E+ K+G N+KYD VL Sbjct: 378 IAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPILEDAAKAKVGQNLKYDASVLA 428 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RY I ++G + D ML SY+ +S HD+ S+A ++L ++ ++I K+ + ++I Sbjct: 429 RYDIELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 488 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q +A E+++V L+L L + E L VYE ++ P++ V+S++E TG+ ID+ Sbjct: 489 ELEQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLSRIERTGVFIDE 548 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L S EI+ L LE+ Y+++ ++FN++SPKQL ILF K+ P KT +G T Sbjct: 549 MKLSAQSVEITARLDELEKKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPST 608 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 609 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATGR 667 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L F Sbjct: 668 LSSTDPNLQNIPIRNEAGRRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFR 727 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH AAEI G++IE+VS + RR AK +NF +IYG+S F LA QL IPR EA Y+ Sbjct: 728 DGKDIHAATAAEIMGLDIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 787 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 +YF R+PG+ +Y+E T++ GYVETIFGRR+H EI S R ERAAINAP+ Sbjct: 788 DKYFERYPGVMQYMEDTRSTAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 847 Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + + E+ K+L+Q+HDELVFEV E ++ + ME A Sbjct: 848 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESA 907 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L+VPL +NW + Sbjct: 908 A----ELKVPLVAEAGHGDNWDQ 926 >gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 957 Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust. Identities = 371/1001 (37%), Positives = 556/1001 (55%), Gaps = 81/1001 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ K +G P A+ G NML L+ SH AV Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A GIP I I+G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +G V I + DKD+ QLV+ L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LAVQAANDGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+ G+G KTA LLQ G+L+ I N ++ K + Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS L ++TDV + + E L+++ L+ EF + +N V + A Sbjct: 241 DAADLSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N PV T+N I + T+ Q + +EQT K+ ++R Sbjct: 296 N--PV------TQNSAEKIPN--NYQATVSAPQ---------AVETEQTFAKVEIDR--- 333 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413 Y + +Q W++K+ + + TD +D+ + + I+ Sbjct: 334 --------SRYETVTTMAQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGISFGLANGE 385 Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLT-KEILSYLKKFFENEH 461 L K+ + + + DL ++ T KN L L LK E+ Sbjct: 386 ACYIPLTHKEQVTLEPQQS--DLFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESAD 443 Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR-- 517 KIG NIKYD + +G+ + G D ML SY L+S GR H++ +A ++L + Sbjct: 444 VKKIGQNIKYDLTIFANHGVQVEGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIE 501 Query: 518 -KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLD 573 +EI K+ + DKI+ ++A E+++V ++L +L P+L EK L+ ++ ++ Sbjct: 502 FEEIAGKGKNQLTFDKIAIDIASQYAAEDADVTMKLHQVLSPEL--EKAPTLVKLFNEIE 559 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 P+++V+S++E G+ ID + L S EI + L LE+ ++ +GE FNL+S KQL +IL Sbjct: 560 MPLVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSELEQLVHSEAGEVFNLASTKQLQEIL 619 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 FTKL P KT G T + L+++ + + K ++E R LSK+KSTY D LP IN Sbjct: 620 FTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMIN 679 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753 ++T RVHT Y A T TGRL+S +PNLQNIPI+ + G++IR+AFI+ K+++ADYSQI Sbjct: 680 QKTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQI 739 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELRI+AH+A + F DIHR AAEIFG+ +++V+ + RR AK INF +IYG+S Sbjct: 740 ELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMS 799 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 F L+ QL I R++A Y++RYF R+P + +++ + + GYVET+FGRR++ EI Sbjct: 800 EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIK 859 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S + R ER AINAP+QG+AADI + AMI + K++ KM++Q+HDELVFEV Sbjct: 860 SSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDD-NIKMIMQVHDELVFEVK 918 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EE I SQ+I MEKA I L+VPL + V +NW E Sbjct: 919 EELIEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955 >gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS] gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS] Length = 937 Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust. Identities = 367/987 (37%), Positives = 541/987 (54%), Gaps = 69/987 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKES 56 M + L LVDGSS++YRAF+A P L R G P AI G NM+ L R+E Sbjct: 1 MTDKKTLLLVDGSSYLYRAFHAMPDL-RAVPGDPKSPATGAIRGMINMMTAL----RREV 55 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116 A + A IFD P TFR++ YP+YKANR +P+ L Q+ + + G P + + E Sbjct: 56 RADYAACIFDAPGKTFRDDWYPEYKANRSPMPDDLRSQIDPIHEVVKLLGWPVLTVPDVE 115 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T IA +G V + S DKDL QLV + DT+ +K D+ V ++G+PP Sbjct: 116 ADDVIGTLAKIAAAQGVEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTAEFGVPP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 MV Q L GDS+DN+PG+ +G KTAA L EYG+L+ ++ A+ +K EN+ + Sbjct: 176 NLMVDYQTLVGDSVDNVPGVEKVGPKTAAKWLLEYGSLDALVERAAEVKGAAG-ENLRKA 234 Query: 237 AETARLSRKLVMLRTDVPI-----TIP-LEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 + LSRKLV +RTD + +P LE L + L F + F L+ + Sbjct: 235 LDKLPLSRKLVTIRTDCDLEGHVTGLPSLEGLPVGAPQTSELKPFYEKFGFKSLVKTL-- 292 Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350 +A + P + IE I + + L D+ S +++ Sbjct: 293 ----EAQEVPPEL------------IEENIKKKAAKANTDQGGLFDEPSDLSALD----- 331 Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 + P +N Y I + W+ KLE A+ T ++D ++ + ++ Sbjct: 332 --------AAAPASNLKYDTITTWEQFDGWLAKLEAAELAAIDTETTSLDEMVAQIVGVS 383 Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 S E +I L+ H D+ + + E+L+ LK + EN K+G +IK Sbjct: 384 FSVEPG--------EAAYIPLT-HNYPDAPAQLPI-DEVLAKLKPWLENPEKKKLGQHIK 433 Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526 YD+ V +GI + G+ D ML SYVL+ + H +AS+A++ L + +++ Sbjct: 434 YDRHVFANHGIEVEGYAHDTMLQSYVLEVHKP-HGLASLAERHLGRSGISYEDLCGKGAH 492 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEI 585 I ++ ++ E++ E+S+ L + L P+L EKL VY+ L+ + + ++E Sbjct: 493 QISFSQVDIAKAAEYSCEDSDQTLDVHRTLWPQLEANEKLRFVYQ-LEMDSSEALYRVER 551 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 G+ ID L S E+ +++LE+ Y+++G+ FNL SPKQ+G+I FTKL P KT Sbjct: 552 NGVMIDSATLAAQSHELGTRIMALEQEAYEIAGQPFNLGSPKQIGEIFFTKLGLPVVKKT 611 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 +G T + LE++ D P+ ILE R LSK+K TY D L N RT RVHT Y+ Sbjct: 612 PSGAPSTDEEVLEKL-AEDYPLPAKILEHRGLSKLKGTYTDKLGQLANPRTGRVHTHYAQ 670 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A +TGRL+S +PNLQNIPI+T G+++R AF++P + SADYSQIELRI+AHI+ Sbjct: 671 AVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGDE 730 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L + F +D+HR AAE+FG ++VS + RR+AK INF +IYG+S F LA L I Sbjct: 731 SLLRAFTEGIDVHRATAAEVFGSTPDQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIET 790 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 AA YI+RYF R+PG+ Y+++TK ++ GYVET+FGRR++ EINSP R ER Sbjct: 791 KAAASYIERYFARYPGVKAYMDETKALAKEQGYVETVFGRRLYLPEINSPNGPRRGGAER 850 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AAINAP+QG+AAD+ + +M+ V L++ K ATKM++Q+HDELVFEVPE E+ I Sbjct: 851 AAINAPMQGTAADLIKLSMVKVQNVLDEEKRATKMIMQVHDELVFEVPEAEVEWVRAEIP 910 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972 M L+VPL I + NW Sbjct: 911 RLMAGVAA----LKVPLLAEIGIGPNW 933 >gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK] gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK] Length = 922 Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust. Identities = 359/983 (36%), Positives = 536/983 (54%), Gaps = 80/983 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P + +G P A+ G NML LL+ E H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAAPNFTNS-EGEPTGAVYGVVNMLRSLLRQFSTE----HIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR++IYP+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 IFDAKGKTFRDDIYPEYKANRPPMPDDLRGQIEPLHAVIKAMGLPLIAISGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A K G V I + DKD+ QLV L +T+ + + V++K+GI PE ++ Sbjct: 121 LATQASKAGMPVLISTGDKDMAQLVDENVTLINTMTDVVMGPAGVVEKFGIGPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LL G L+ I N I K + + + Sbjct: 181 ALMGDKVDNIPGVPGVGEKTAKALLTGVGGLDAIYDNLDAIPALGFRGSKTMPKKLADNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A +S +L ++ DV + L+ + + L S L+F + ++ + Sbjct: 241 EAAYMSYELATIKLDVELDSAPHELLKTEPDTDELTSLFGKLQFRRWLSEM--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++ ++ K +A E SE T +K+ Sbjct: 292 --------LDGSDGKIVADEKA-----------------------SEPTEKKVVAPT--- 317 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I++ W+ L +F TD +D + + ++ + +++ Sbjct: 318 -----IDRSGYETILDEASFNSWLATLTAADVVAFDTETDGLDYMTANLVGVSFA-VEEG 371 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L+ LK E+ K+G N+K+D +L Sbjct: 372 KAAYVPVAHDYLDAPEQLDRDW---------VLAQLKPLLEDPAQNKVGQNLKFDMSILA 422 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RY I+M+G + D ML SYV +S HD+ S+A ++L + + +E+ K + ++I Sbjct: 423 RYDINMQGIKYDTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLTFNQI 482 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 +A E++++ L+L LL K+ E+L V+E ++ P++ V+S++E TG+ ID Sbjct: 483 DLDVAGPYAAEDADITLRLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDS 542 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 LL S EI+ L LE Y+++ ++FNLSSPKQL ILF K+ P KT +G T Sbjct: 543 MLLSAQSTEIAARLDELETKAYEIAEQEFNLSSPKQLQAILFEKMGLPILKKTPSGAPST 602 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K +LE+R L+K+KSTY D LP +N T RVHT Y A T TGR Sbjct: 603 NEEVLQELAL-DYPLPKILLEYRGLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVTATGR 661 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ G++IR+AFI+P K+++ DYSQIELRI+AH++ L + F+ Sbjct: 662 LSSSDPNLQNIPVRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALLEAFK 721 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH AAEI G+ IE V+ + RR AK INF +IYG+S F LA QL + R+EA DY+ Sbjct: 722 QGKDIHAATAAEILGLPIESVTTEQRRRAKAINFGLIYGMSAFGLAKQLGMGRNEAQDYM 781 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E T+ + GYVET+FGRR++ +I S R ERAAINAP+ Sbjct: 782 NVYFERYPGVLEYMESTRVHASEQGYVETLFGRRLYLPDIKSRNGIRRKAAERAAINAPM 841 Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI +RAM+ V + +E + ++L+Q+HDELVFEV E E+ S + ME A Sbjct: 842 QGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDELVFEVQESELDAVSADVRRLMELA 901 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL + NNW E Sbjct: 902 A----ELDVPLIADAGAGNNWDE 920 >gi|296392358|ref|ZP_06881833.1| DNA polymerase I [Pseudomonas aeruginosa PAb1] Length = 913 Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust. Identities = 358/986 (36%), Positives = 539/986 (54%), Gaps = 98/986 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G P A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RKQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ +YKANRP +P+ L Q+ + + +A G+P + ++G EADD+I T Sbjct: 61 AKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + G V I + DKD+ QLV L +T+ ++D++ V +K+G+ PE ++ AL Sbjct: 121 SSAAAGRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENIL---INASRIKQKKRRENILE 235 GD +DNIPG+PG+G KTA LL Y +L+ + I ++ K EN Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEEN--- 237 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E A LS +L ++TDV + + ++ L + LI+ + LEF ++ + Sbjct: 238 -REQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELEFKNWLDDLLREAKEA 296 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 N E I+ E+D D + + F + Sbjct: 297 GENGEAET-----------PIQAEVDYDVVLDQAGFDA---------------------- 323 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 W++KLE +F T ++DA ++ + ++ + + Sbjct: 324 ------------------------WLKKLEEAELIAFDTETTSIDAQQAQVVGVSFA-VK 358 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + + ++ + +D+ +L LK E+ LK+G + KYD V Sbjct: 359 EGEAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409 Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 L I++RG D ML SYVLDS + HD+ S+A K+L ++ ++I + Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588 D+I+ Q +A E+++V L+L L KL + L V ++ P++ V++++E G Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D +LL S E+ + +++LE YDL+G++FNL SPKQLG IL+ KL P +KT TG Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q T L ++ D + K I+++R +SK+KSTY D LP IN RT R+HT Y A Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 649 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+AK L Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F + LD+HR AAE+FGV +E VS RR AK INF +IYG+S F LA Q+ + R EA Sbjct: 710 DAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI RYF R+PG+ Y+E+T+ + G+VET+FGRR++ EI+S ++R ER AI Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI +RAM++V L + L +++LQ+HDELV EV E+ + + I M Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLLESGLDARVILQVHDELVLEVREDLVEQVREGIRPLM 889 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V V +NW E Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDE 911 >gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32] gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32] Length = 933 Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust. Identities = 359/983 (36%), Positives = 539/983 (54%), Gaps = 69/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P D +P NA+ G NML +++ + IA V Sbjct: 6 DNPLILIDGSSYLYRAFHAYPGTMSNGD-IPTNAVYGVVNMLRSMMRQFASDRIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LASQASAMGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G++E + N I K + + + Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLADNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S +L ++ DV + E L+ N LI L F +N + Sbjct: 241 ANADMSYELATIKLDVELEETPESLVKAQPNIDELIKLYGQLVFKSWLNELL-------- 292 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +G + E D ++ + S T ++N+ Sbjct: 293 --------------EGGSGVVEADEKSSAAGAGSVRSSASTVEMNT-------------- 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 S I+ +Y I++ W++KL+ +F TD++D + + ++ +T ++ Sbjct: 325 -SAVTIDRSNYETILDEASFNVWLEKLKAAELFAFDTETDSLDYMVANLVGLSFAT-EEG 382 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L LK E++ K+G N+KYD VL Sbjct: 383 VAAYVPVAHDYLDAPQQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDMSVLA 433 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RYGI M+G + D ML SYV +S HD+ S+A ++L ++ ++I K + ++I Sbjct: 434 RYGIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKKQLTFNQI 493 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + +A E+++V L+L L + EKL +Y ++ P+I V+S++E TG+ ID Sbjct: 494 ELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKTIYGEIEVPLIPVMSRIERTGVFIDD 553 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 LL S EI+ L LE+ Y+++ ++FN++SPKQL ILF K+ P KT +G T Sbjct: 554 MLLGAQSQEIAVRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVIKKTPSGAPST 613 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K I+E+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 614 NEEVLQELAL-DYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHTSYHQAVTATGR 672 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AF++ K+++ DYSQIELRI+AH++ L + F+ Sbjct: 673 LSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQ 732 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH AAEI GV+IE V+ + RR AK +NF +IYG+S F LA QL IPR EA Y+ Sbjct: 733 QGKDIHAATAAEIIGVDIESVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYM 792 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ +Y+E T++ + G+VETI+GRR+H EI S R ERAAINAP+ Sbjct: 793 DTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPM 852 Query: 893 QGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + ++ + K+L+Q+HDELVFEV E + + ME A Sbjct: 853 QGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVEESALAEIESKVQELMESA 912 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL +NW + Sbjct: 913 A----ELEVPLVAEAGHGDNWDQ 931 >gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] Length = 921 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 356/971 (36%), Positives = 542/971 (55%), Gaps = 66/971 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 LVDGS F++RAF+A P L+ GL NAI G + + KL++ ++ +H AVIFD P Sbjct: 6 LVDGSYFLFRAFHALPPLTTS-TGLHTNAIRGASSAIQKLMRRTQP----THMAVIFDTP 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T T A Sbjct: 61 EPTFRHKLSPIYKGDRPSMPEELSQQIPYLHALIKALGIPLYSLPGAEADDIIGTLTKRA 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 EG V I + DKD+ QLV+P L D+ KE +D V++K+G+ P +++ L GD Sbjct: 121 LSEGHHVLISTGDKDMAQLVNPHVKLEDSFKERVLDEAGVLEKFGVHPHQIIDYLTLMGD 180 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248 + D I G+PG+G KTAA LL EYG+L+NI+ N ++K K +NI + + ++ +L Sbjct: 181 ASDGIMGVPGVGAKTAAKLLTEYGSLDNIIANVDQLK-GKISQNIKDNLDNIKIDHQLAS 239 Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308 + D+ + + L L + N +L LEF + + + + + I Sbjct: 240 IVCDLDLALDWHDLKLSNPNINQLRDLYTELEFRNQLQSLDHPNNPNTPAYQQTSQSIVK 299 Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368 +E K E I D +SQ L D T Q L+R+Q+ + I+ + Sbjct: 300 SEQK---TEQVIAEDHANLSSQDDQLGDATYHTVLTQADWATLLQRMQQADHFAIDTE-- 354 Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428 T ++ + +L F + D DA++ P+A Sbjct: 355 -----TTNLDYRIAEL-----VGFSVAFDAHDAYYV-PVA-------------------- 383 Query: 429 IDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 D G L +E +L +K ENE KIGH++KYD + +GI+++G Sbjct: 384 --------HDYEGAPEQLNREHVLEQIKPILENEQVKKIGHHLKYDAHIFANHGITIQGW 435 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 + D ML SYVL++ + H + +A+ +LS+ T ++I ++I +A Sbjct: 436 YFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKSFNQIELEVAAHYA 495 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V +L+ +L KL +L+++ ++ P+ V++ ME GI++D L Q+S E Sbjct: 496 AEDAHVTYRLYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVE 555 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 S+ + +LE +L+GE FN++SPKQ+G++LF +L G KT TGQ+ T+ LE+I Sbjct: 556 FSETMQTLENQATELAGEAFNIASPKQVGEVLFDRLGLKGGKKTATGQYSTSESILEKI- 614 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 ++P+ + ILE R L+K+K+TY D L + T RVHT Y A T TGRL+S +PNLQ Sbjct: 615 --EHPLAEVILEHRGLAKLKNTYTDRLVEQSHDSTHRVHTSYHQALTATGRLSSTDPNLQ 672 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+T +G++IRRAFI+P + L++ADYSQIELR++AH ++ L F+ D+HR Sbjct: 673 NIPIRTPIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQQGQDVHRRT 732 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G++IE V+ RR AK +NF ++YG+S F L QL R E+ YI RYF R+PG Sbjct: 733 AAEVLGIDIEDVTNDQRRQAKAVNFGLLYGMSEFGLTRQLGFTREESRSYIARYFQRYPG 792 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + +Y+E+T+ R+ G+VETI GRR++ +I + I+ ERAAINAP+QGSAADI + Sbjct: 793 VLDYMERTRQIAREQGFVETILGRRLYTPDILANNKMIKQAAERAAINAPLQGSAADIIK 852 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI+V K L K K+LLQ+HDELVFE E S+ I M+ +++ VP Sbjct: 853 LAMIAVDKILP--KDQAKLLLQVHDELVFEADETIADELSKQIAEVMQSV----LDISVP 906 Query: 962 LKVNIKVSNNW 972 V + NW Sbjct: 907 FVVEVGQGQNW 917 >gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968] gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150] gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968] gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150] Length = 894 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 365/975 (37%), Positives = 548/975 (56%), Gaps = 99/975 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS+ +RAF+A P L+ G P AI G NM+ +L+++ + E +A V+FD Sbjct: 6 LILVDGSSYFFRAFHALPPLTNS-KGQPTGAIYGVVNMIKRLIKDYQPEELA----VVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 TFR+E YP+YKA+RP +P+ L Q PL+ L +A GIP + I+G EADD+I T Sbjct: 61 AKGKTFRDEWYPEYKAHRPPMPQELSSQFTPLIEL-LEAMGIPILIIEGVEADDVIGTLA 119 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A ++G +V I + DKD+ QLV+ L +T+ +DIE V +K+GI P +++ L Sbjct: 120 TQATEQGVSVVISTGDKDMAQLVNEHISLINTMNNSAMDIEGVKEKFGIMPSQVIDYLTL 179 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAETARL 242 GDS+DN+PG+ G KTA L EY +L+N++ NA++I K RE+I + L Sbjct: 180 IGDSVDNVPGVTKCGPKTAIKWLTEYQSLDNLIRNANQIGGKIGDYLRESIPQLP----L 235 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S+KLV ++TDV + + L + N RLI+ ++ LEF + + Sbjct: 236 SKKLVTIKTDVSLPLRWGELQPKTMNKERLIALIRDLEFKNWLKEL-------------- 281 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 LS++ S N+E+ Q P Sbjct: 282 -------------------------------LSEEESYDNNEK--------------QVP 296 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + S+ I + + W+ +LE + T ++D ++ + I+++ + K Sbjct: 297 V---SFELITTNQQLSHWLNQLEKCEAFCIDTETTSLDVMMAEIVGISLAIEEGK----- 348 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 +I L+ D L +E+L+ L EN KIG N+KYD VL +GI+ Sbjct: 349 ---AAYIPLT----HDDGSPQLLREEVLTALNPILENPTIKKIGQNLKYDYSVLRNHGIT 401 Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 ++G + D ML SYVL+SG HD+ S+A K+L + + +EI + D+I + Sbjct: 402 LKGIYYDTMLESYVLNSGSGRHDMDSLALKYLGHKTISYEEIAGKGAKQLRFDQIPVEKA 461 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +A E++++ LQL L P LI E + HV+ ++ P++ V++ ME G+ ID LKQ Sbjct: 462 GAYAAEDADITLQLHHKLYP-LIPESVHHVFGNIEMPLVTVLADMERMGVLIDSATLKQH 520 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 + + + +LEE L+G+ FNL+SPKQL +ILF K P AKT TGQ +TA+ + Sbjct: 521 GERLKERIRTLEEEALHLAGKPFNLNSPKQLQEILFDSHKLPIIAKTPTGQ-PSTAEAVL 579 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 Q D + ILE+R L+K+ STY D+LP IN +T RVHT Y+ A T TGRL+S EP Sbjct: 580 QELAYDYRLAAVILEYRSLTKLVSTYIDALPKKINPKTNRVHTSYNQAVTATGRLSSSEP 639 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+++ G+ IR AFI+P +++ADYSQIELRI+AH+++ L + F N D+H Sbjct: 640 NLQNIPIRSEEGRLIRTAFIAPEDNIILAADYSQIELRIMAHLSQDENLLKAFANGWDVH 699 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 A+EIF + +E+++ + RR AK INF +IYG+S F LA Q+ + R +A YI YF R Sbjct: 700 AATASEIFQIPLEEINNEQRRRAKAINFGLIYGMSSFGLAKQIGVERQDAQYYIDTYFQR 759 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +P + EY+ +T+ GYVET+FGRR++ EIN+ + ER AINAP+QG+AAD Sbjct: 760 YPKVLEYMNRTRQQAHHQGYVETLFGRRLYLPEINARNLMRQKAAERTAINAPMQGTAAD 819 Query: 899 ITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 I + AMI + K H K +M++Q+HDELVFEV + I ++ ++I ME + Sbjct: 820 IIKNAMICIAKWQNSHEKPPARMIMQVHDELVFEVNKNAIESSKEMIRELMEHT----VT 875 Query: 958 LRVPLKVNIKVSNNW 972 L VPL V+I NW Sbjct: 876 LSVPLVVSIGTGANW 890 >gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21] gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21] Length = 906 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 352/956 (36%), Positives = 537/956 (56%), Gaps = 71/956 (7%) Query: 33 LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92 +P NAI G NM+ ++ ++ + AVIFD TFR+E+Y YKA+RP +P+ L Sbjct: 6 IPTNAIYGVVNMIRSMM----RQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELR 61 Query: 93 PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152 Q+ + +A G+P + I+G EADD+I T A + G V I + DKD+ QLV Sbjct: 62 CQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNI 121 Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212 L +T+ +D E VI+K+GIPPE ++ AL GD +DNIPG+PG+G KTA LLQ G Sbjct: 122 TLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIG 181 Query: 213 NLENILINASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266 LE + N +I K + + E + A+LS +L ++ DV + + L+ + Sbjct: 182 GLEALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIKCDVELEESPQTLLKQT 241 Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326 + L+S L F + + LD T G+ + D Sbjct: 242 PDRDALMSLYGKLAFKSWLTEL---------------LDGGT----GV-----VTADEQT 277 Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386 KTS S++ T+ ++ P+ I+ Y I+N +D Q W++KL+ Sbjct: 278 KTS---SVTVSTAASHAAAIPES---------PAAHIDRSQYQTILNEQDFQLWLEKLKQ 325 Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446 +F TD +D + + ++ + + + + V ++D +D Sbjct: 326 AELFAFDTETDNLDYMVANLVGMSFA-VAEGEAAYLPVAHDYLDAPQQLDRDW------- 377 Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505 +++ LK E+E K+G N+KYD V+ RYG+ +RG D ML SYV +S HD+ Sbjct: 378 --VIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 435 Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+A ++L ++ +++ K+ + ++I+ + ++A E+++V L+L + P ++ Sbjct: 436 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALQEAAQYAAEDADVTLRLHQRIHP--LI 493 Query: 563 E---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 E KL VY ++ P++ V+S++E TG+ ID LL S EI+ L LE+ Y+L+G+ Sbjct: 494 EQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAYELAGQ 553 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 FNLSSPKQL ILF ++K P KT +G T + L+++ D P+ K ++E+R L+K Sbjct: 554 PFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAK 612 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 +KSTY D LP IN T RVHT Y A T TGRL+S +PNLQNIP++ + G++IR+AF++ Sbjct: 613 LKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVA 672 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 P K+++ DYSQIELRI+AH++ L F + DIH AAEI GV I++VS + RR Sbjct: 673 PHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRR 732 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++ Q GYV Sbjct: 733 RAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYV 792 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLAT 918 ETIFGRR+H EI S + R ERAAINAP+QG+AADI ++AM+ V + +E + Sbjct: 793 ETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRV 852 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 K+L+Q+HDELVFEV E ++ + ME A L VPL NW + Sbjct: 853 KLLMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGGNWDQ 904 >gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088] gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088] Length = 908 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 358/987 (36%), Positives = 542/987 (54%), Gaps = 94/987 (9%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 MQ L LVDGSS++YRAF+A P L+ G P AI G +ML +L Q+ I Sbjct: 1 MQNLAPLVLVDGSSYLYRAFHALPPLTTTK-GQPTGAIKGVVSMLKRLHQDYASSPIV-- 57 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD TFR+E++PDYKA RP +P+ L Q+ + +A G P I G EADD+ Sbjct: 58 --VVFDAKGPTFRDEMFPDYKAQRPPMPDELRTQIEPLHAIVKALGYPLICEPGVEADDV 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T A ++G V + + DKD+ QLV L +T+ + ++D V++K+G P+KM+ Sbjct: 116 IGTLAKQASEQGMDVIVSTGDKDMAQLVDQHVTLVNTMSDTRLDPAGVMEKYGFGPDKMI 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR-----IKQKKRRENILE 235 AL GD +DNIPG+ G+G KTA L+Q G L++I N R I+ K LE Sbjct: 176 DYLALMGDKVDNIPGVAGVGEKTALGLIQGLGGLDDIYANLDRVADLPIRGAKSLAAKLE 235 Query: 236 YA-ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 + A +S L ++ DV + L + + L + + LEF + Sbjct: 236 AERDAAYMSYTLATIKLDVELAFAPADLRNDQPDTAALSHWYQELEFRSWL--------- 286 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 EID T+ ++ + ++ ++ + T Q L Sbjct: 287 -----------------------AEIDASATVTRAEPAPIAPAQTQYDCVTTEQAL---- 319 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 QW+ L+ G+ +F T+++D ++ + + Sbjct: 320 -----------------------AQWISVLKEAGTFAFDTETNSLDYMEAELVGL----- 351 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYD 472 SF E + V + D G + L+++ +L+ LK E+ + K+G ++KYD Sbjct: 352 ------SFCAEP-GVACYVPVAHDYPGAPDQLSRDYVLNQLKDLLEDPQYQKVGQHLKYD 404 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSI 528 VL YGI++RGF D ML SYVLDS HD+ S+A+++L + + +++ + Sbjct: 405 MHVLANYGIALRGFAGDTMLESYVLDSVGGRHDMDSLAERYLGRRTISFEDVAGKGAKQL 464 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITG 587 +++S Q +A E++++ QL+ L +L + LH VY ++ P+ V+ +E G Sbjct: 465 TFNQVSLEQAVPYACEDADITWQLYEYLTNQLTATESLHTVYTDIELPLAPVLQSIERNG 524 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + +++L+Q S+ I L+ LE +DL+G FNL S KQLG+ILF +LK P KT Sbjct: 525 ALVSREILQQQSSVIGARLIELEAEAHDLAGRPFNLGSTKQLGEILFDELKLPIIKKTPK 584 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + L ++ D P+ K +LE+R L+K+KSTY D LP IN RT R+HT Y A Sbjct: 585 GAPSTGEEVLVELAL-DYPLPKVLLEYRGLAKLKSTYTDKLPTLINPRTGRIHTSYHQAV 643 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIPI++ G+ IR+AFI+P +++ADYSQIELRI+AH++ L Sbjct: 644 TATGRLSSSDPNLQNIPIRSVEGRAIRKAFIAPENHVIVAADYSQIELRIMAHLSGDAGL 703 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F LD+H AAE+FGV +++V+ RR AK INF +IYG+S F LA QL I R+E Sbjct: 704 LTAFNEGLDVHAATAAEVFGVALDEVTSDQRRSAKAINFGLIYGMSAFGLAKQLHIGRAE 763 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 + YI YF R+PG+ +Y+++T+ + GYVETIFGRR++ EIN+ ER A Sbjct: 764 SQAYIDTYFQRYPGVLDYMDRTRQGAHERGYVETIFGRRLYLPEINARNKMRVQAAERTA 823 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QGSAADI ++AM++V + L D L +KM++Q+HDELVFEVP+ E+ ++ + Sbjct: 824 INAPMQGSAADIIKKAMLAVDRFLRDSSLESKMIMQVHDELVFEVPKHELDALRAGVITA 883 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A L VPL V + + +NW+E Sbjct: 884 MESAA----QLAVPLLVEVGLGDNWEE 906 >gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] Length = 921 Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust. Identities = 356/971 (36%), Positives = 542/971 (55%), Gaps = 66/971 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 LVDGS F++RAF+A P L+ GL NAI G + + KL++ ++ +H AVIFD P Sbjct: 6 LVDGSYFLFRAFHALPPLTTS-TGLHTNAIRGASSAIQKLMRRTQP----THMAVIFDTP 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T T A Sbjct: 61 EPTFRHKLSPIYKGDRPSMPEELSQQIPYLHALIKALGIPLYSLPGAEADDIIGTLTKRA 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 EG V I + DKD+ QLV+P L D+ KE +D V++K+G+ P +++ L GD Sbjct: 121 LSEGHHVLISTGDKDMAQLVNPHVKLEDSFKERVLDEAGVLEKFGVHPHQIIDYLTLMGD 180 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248 + D I G+PG+G KTAA LL EYG+L+NI+ N ++K K +NI + + ++ +L Sbjct: 181 ASDGIMGVPGVGAKTAAKLLTEYGSLDNIIANVDQLK-GKISQNIKDNLDNIKIDHQLAS 239 Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308 + D+ + + L L + N +L LEF + + + + + I Sbjct: 240 IVCDLDLALDWHDLKLSNPNINQLRDLYTELEFRNQLQSLDHPNNPNTPAYQQTSQSIVK 299 Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368 +E K E I D +SQ L D T Q L+R+Q+ + I+ + Sbjct: 300 SEQK---TEQVIAEDHANLSSQDDQLGDATYHTVLTQVDWATLLQRMQQADHFAIDTE-- 354 Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428 T ++ + +L F + D DA++ P+A Sbjct: 355 -----TTNLDYRIAEL-----VGFSVAFDAHDAYYV-PVA-------------------- 383 Query: 429 IDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 D G L +E +L +K ENE KIGH++KYD + +GI+++G Sbjct: 384 --------HDYEGAPEQLNREHVLEQIKPILENEQVKKIGHHLKYDAHIFANHGITIQGW 435 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 + D ML SYVL++ + H + +A+ +LS+ T ++I ++I +A Sbjct: 436 YFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIELEVAAHYA 495 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V +L+ +L KL +L+++ ++ P+ V++ ME GI++D L Q+S E Sbjct: 496 AEDAHVTYRLYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVE 555 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 S+ + +LE +L+GE FN++SPKQ+G++LF +L G KT TGQ+ T+ LE+I Sbjct: 556 FSETMQTLENQATELAGEAFNIASPKQVGEVLFDRLGLKGGKKTATGQYSTSESILEKI- 614 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 ++P+ + ILE R L+K+K+TY D L + T RVHT Y A T TGRL+S +PNLQ Sbjct: 615 --EHPLAEVILEHRGLAKLKNTYTDRLVEQSHDSTHRVHTSYHQALTATGRLSSTDPNLQ 672 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+T +G++IRRAFI+P + L++ADYSQIELR++AH ++ L F+ D+HR Sbjct: 673 NIPIRTPIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQQGQDVHRRT 732 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G++IE V+ RR AK +NF ++YG+S F L QL R E+ YI RYF R+PG Sbjct: 733 AAEVLGIDIEDVTNDQRRQAKAVNFGLLYGMSEFGLTRQLGFTREESRSYIARYFQRYPG 792 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + +Y+E+T+ R+ G+VETI GRR++ +I + I+ ERAAINAP+QGSAADI + Sbjct: 793 VLDYMERTRQIAREQGFVETILGRRLYTPDILANNKMIKQAAERAAINAPLQGSAADIIK 852 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI+V K L K K+LLQ+HDELVFE E S+ I M+ +++ VP Sbjct: 853 LAMIAVDKILP--KDQAKLLLQVHDELVFEADETITDELSKQIAEVMQSV----LDISVP 906 Query: 962 LKVNIKVSNNW 972 V + NW Sbjct: 907 FVVEVGQGQNW 917 >gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] Length = 918 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 366/991 (36%), Positives = 535/991 (53%), Gaps = 92/991 (9%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M N L LVDGSS++YRAF+A+ R GLP A+ NM+ L RK+ Sbjct: 1 MAPSNPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSL----RKQYPDC 56 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD TFR++IYP+YKA R +P+ L Q+ + +A G P + ++G EADD Sbjct: 57 HVAVVFDAKGKTFRDDIYPEYKATRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADD 116 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +I T A ++ V I + DKD+ QLVS L DT+K+ K D E VI+K+G+PPE + Sbjct: 117 VIGTLARQATEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENI 233 + AL GD +DNIPG+ G+G KTA LLQ G+++ I N ++ K + Sbjct: 177 IDYLALMGDKVDNIPGMTGVGEKTALALLQGIGSIDEIAANLDKVAALGFRGSKAFADKF 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E E RLS L ++TDV + LE L L + L++ + E LI Sbjct: 237 REQEEQVRLSYVLATIKTDVELEQSLEELQLGPIDKESLLAVYREYELRNLIKE------ 290 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 L+ E+ G Q + D + + + +T Sbjct: 291 ----------LESGGEESAG----------------QEEAGDDSAAPVAAIET------- 317 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 Y I++ + W+++L+ +F T ++D ++ + + Sbjct: 318 -------------DYRCILDEAEFDGWLEQLKVAPLFAFDTETTSLDYMEARIVGV---- 360 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKY 471 SF VE V D G E +L LK E+ LK+G N+KY Sbjct: 361 -------SFAVEA-GKAAYVPFGHDYLGAPVQLTEAVVLGKLKPLLEDPTRLKVGQNLKY 412 Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527 D+ VL + I ++G D ML SYVL+S S HD+ S+A+++L + ++I Sbjct: 413 DRNVLLNHDIDLQGIAYDTMLESYVLNSTASRHDMDSLAKRYLGVETTSFEDIAGKGVKQ 472 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEIT 586 + ++I Q +A E++++ L+L L +L V L V+ ++ P++ V+++ME+ Sbjct: 473 LTFNQIELEQAAPYAAEDADITLRLHQTLWGQLEAVPGLCQVFSEIELPLLPVLARMELL 532 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G ID LL Q S EI L LE ++L+G++FNLSSPKQLG+ILFTKL P KT Sbjct: 533 GTTIDPKLLHQQSQEIELRLAELERQAHELAGQEFNLSSPKQLGEILFTKLGLPIIKKTP 592 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 G T + L ++ + + ++E R L+K+KSTY D LP I +T RVHT Y A Sbjct: 593 KGAPSTAEEVLAEL-AETYELPRLLMEHRTLAKLKSTYTDKLPLMIKPQTGRVHTSYHQA 651 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 TGRL+S +PNLQNIP++ + G++IR+AFI KL++ADYSQIELRI+AH++ Sbjct: 652 VAATGRLSSSDPNLQNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKG 711 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L F DIH+ AAE+FGV ++ V+ MRR AK INF +IYG+S F LA QL I R+ Sbjct: 712 LLTAFAEGKDIHKATAAEVFGVALDAVTTDMRRSAKAINFGLIYGMSAFGLAKQLGIGRA 771 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA Y+ YF R+PG+ EY+E+T+ GYVET+FGRR++ +I S + +R ERA Sbjct: 772 EAQKYMDLYFERYPGVLEYMERTRQQAEAQGYVETLFGRRLYLPDIKSRNAGLRKGAERA 831 Query: 887 AINAPIQGSAADITRRAMISVH---KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 AINAP+QG+AADI +RAMI+V + +ED + +ML+Q+HDELVFE+ EE++ + I Sbjct: 832 AINAPMQGTAADIIKRAMINVDGWIRGIEDESI--RMLMQVHDELVFEIREEKLEEYTAI 889 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I M A L VPL V +NW + Sbjct: 890 IKEKMSAAA----ELHVPLLVEAGTGDNWDQ 916 >gi|107104595|ref|ZP_01368513.1| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2] Length = 913 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 358/986 (36%), Positives = 539/986 (54%), Gaps = 98/986 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G P A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RKQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ +YKANRP +P+ L Q+ + + +A G+P + ++G EADD+I T Sbjct: 61 AKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ ++D++ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENI---LINASRIKQKKRRENILE 235 GD +DNIPG+PG+G KTA LL Y +L+ + I ++ K EN Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEEN--- 237 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E A LS +L ++TDV + + ++ L + LI+ + LEF ++ + Sbjct: 238 -REQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELEFKNWLDDLLREAKEA 296 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 N E I+ E+D D + + F + Sbjct: 297 GENGEAET-----------PIQAEVDYDVVLDQAGFDA---------------------- 323 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 W++KLE +F T ++DA ++ + ++ + + Sbjct: 324 ------------------------WLKKLEEAELIAFDTETTSIDAQQAQVVGVSFA-VK 358 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + + ++ + +D+ +L LK E+ LK+G + KYD V Sbjct: 359 EGEAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409 Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 L I++RG D ML SYVLDS + HD+ S+A K+L ++ ++I + Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588 D+I+ Q +A E+++V L+L L KL + L V ++ P++ V++++E G Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D +LL S E+ + +++LE YDL+G++FNL SPKQLG IL+ KL P +KT TG Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q T L ++ D + K I+++R +SK+KSTY D LP IN RT R+HT Y A Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 649 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+AK L Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F + LD+HR AAE+FGV +E VS RR AK INF +IYG+S F LA Q+ + R EA Sbjct: 710 DAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI RYF R+PG+ Y+E+T+ + G+VET+FGRR++ EI+S ++R ER AI Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI +RAM++V L++ L +++LQ+HDELV EV EE + + I M Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREELVEQVCEGIRPLM 889 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V V +NW E Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDE 911 >gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 957 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 369/1001 (36%), Positives = 558/1001 (55%), Gaps = 81/1001 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ K +G P A+ G NML L+ SH AV Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A GIP I I+G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A G V I + DKD+ QLV+ L +T+ +D E VI K+GIPPE ++ Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+ G+G KTA LLQ G+L+ I N ++ K + Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS L ++TDV + + E L+++ L+ EF + +N V + A Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N PV T+N E +I + + + + + +EQT K+ ++R Sbjct: 296 N--PV------TQNS----EEKIPNN-------YQATASVPQAVETEQTFAKVEIDR--- 333 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS----- 412 Y + + +Q W++K+ + + TD +D+ + + ++ Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385 Query: 413 ----TLDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLT-KEILSYLKKFFENEH 461 L K+ + + + DL ++ T KN L L LK E+ Sbjct: 386 ACYIPLTHKEQVTLEPQQS--DLFAEPAEAETTTSFELAKNQLNLTACLIELKPLLESAD 443 Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR-- 517 KIG NIKYD + +G+ + G D ML SY L+S GR H++ +A ++L + Sbjct: 444 VKKIGQNIKYDLTIFANHGVQVEGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIE 501 Query: 518 -KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLD 573 +EI K+ + DKI+ ++A E+++V ++L +L P+L EK L+ ++ ++ Sbjct: 502 FEEIAGKGKNQLTFDKIAIDIASQYAAEDADVTMKLHQVLAPEL--EKAPTLVKLFNEIE 559 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 P+++V+S++E G+ ID + L SAEI + L LE+ ++ +GE FNL+S KQL +IL Sbjct: 560 MPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEIL 619 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 FTKL P KT G T + L+++ + + K ++E R LSK+KSTY D LP IN Sbjct: 620 FTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMIN 679 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753 +T RVHT Y A T TGRL+S +PNLQNIPI+ + G++IR+AFI+ K+++ADYSQI Sbjct: 680 PKTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIANKGYKIVAADYSQI 739 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELRI+AH+A + F DIHR AAEIFG+ +++V+ + RR AK INF +IYG+S Sbjct: 740 ELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMS 799 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 F L+ QL I R++A Y++RYF R+P + +++ + + GYVET+FGRR++ EI Sbjct: 800 EFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIK 859 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S + R ER AINAP+QG+AADI + AMI + K++ + KM++Q+HDELVFEV Sbjct: 860 SSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVK 918 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EE + SQ+I MEKA I L+VPL + V +NW E Sbjct: 919 EELVEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955 >gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 917 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 367/991 (37%), Positives = 537/991 (54%), Gaps = 93/991 (9%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M N L LVDGSS++YRAF+A+ R GLP A+ NM+ L RK+ Sbjct: 1 MAPSNPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSL----RKQYPDC 56 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD TFR++IYP+YKANR +P+ L Q+ + +A G P + ++G EADD Sbjct: 57 HVAVVFDAKGKTFRDDIYPEYKANRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADD 116 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +I T A ++ V I + DKD+ QLVS L DT+K+ K D E VI+K+G+PPE + Sbjct: 117 VIGTLARQATEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENI 233 + AL GD +DNIPG+ G+G KTA LLQ G+++ I N ++ K + Sbjct: 177 IDYLALMGDKVDNIPGMTGVGEKTALALLQGIGSIDEIAANLDKVAALGFRGSKAFADKF 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E E RLS L ++TDV + LE L L + L++ + E LI + + Sbjct: 237 REQEEQVRLSYVLATIKTDVALEQSLEELQLGPIDKEALLAVYREYELRNLIKELES--- 293 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 G A E+ + D + + + + +T + L Sbjct: 294 -------------------GGAEESGAEGD-----------DEGAAPVAAIETDYRCIL- 322 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 + + +W+ +L+ +F T ++D ++ + + Sbjct: 323 -------------------DEAEFDEWLARLQAAPLFAFDTETTSLDYMEARVVGV---- 359 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKY 471 SF +E V D G E +L LK E+ LK+G N+KY Sbjct: 360 -------SFAIEP-GKAAYVPFGHDYLGAPVQLTEAVVLGKLKPLLEDPARLKVGQNLKY 411 Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSS 527 D+ VL +GI ++G D ML SYVL+S S HD+ S+A+++L + + +EI Sbjct: 412 DRNVLLNHGIELQGIAYDTMLESYVLNSTASRHDMDSLARRYLNAETISFEEIAGKGVKQ 471 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586 + ++I Q +A E++++ L+L L KL E L V+ ++ P++ V+++ME Sbjct: 472 LTFNQIELEQAAPYAAEDADITLRLHQALWGKLSAEPGLAKVFSEIELPLLPVLARMERL 531 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G I+ LL Q S EI L LE+ ++L+G++FNLSSPKQLG+ILFTKL P KT Sbjct: 532 GTTIEPKLLHQQSQEIEVRLAELEKQAHELAGQEFNLSSPKQLGEILFTKLGLPIIKKTP 591 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 G T + L ++ + + ++E R L+K+KSTY D LP I +T RVHT Y A Sbjct: 592 KGAPSTAEEVLAEL-AETYELPQLLMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSYHQA 650 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 TGRL+S +PNLQNIP++ + G++IR+AFI KL++ADYSQIELRI+AH++ Sbjct: 651 VAATGRLSSTDPNLQNIPVRNEQGRRIRQAFIPCAGYKLVAADYSQIELRIMAHLSGDKG 710 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L F DIH+ AAE+FGV +E V+ MRR AK INF +IYG+S F LA QL I R+ Sbjct: 711 LLTAFAEGKDIHKATAAEVFGVALEAVTSDMRRSAKAINFGLIYGMSAFGLAKQLGIGRA 770 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA Y+ YF R+PG+ EY+E+T+ GYVET+FGRR++ +I S + +R ERA Sbjct: 771 EAQKYMDLYFERYPGVLEYMERTRQQADAQGYVETLFGRRLYLPDIKSRNAGLRKAAERA 830 Query: 887 AINAPIQGSAADITRRAMISVH---KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 AINAP+QG+AADI +RAMI+V + +ED + +ML+Q+HDELVFE+ EE++ I Sbjct: 831 AINAPMQGTAADIIKRAMINVDGWIRGIEDQSI--RMLMQVHDELVFEIREEKLEEYIAI 888 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I M A L VPL V +NW + Sbjct: 889 IKEKMSAAA----ELDVPLVVEAGTGDNWDQ 915 >gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101] Length = 916 Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust. Identities = 349/954 (36%), Positives = 533/954 (55%), Gaps = 71/954 (7%) Query: 32 GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEML 91 G P A+ G NML L+ + +H AV+FD TFR+E++ YK++RP +P+ L Sbjct: 21 GEPTGAMYGVLNMLRSLIMQYKP----THAAVVFDAKGKTFRDELFEHYKSHRPPMPDDL 76 Query: 92 LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151 Q+ + +A G+P + + G EADD+I T AEK G V I + DKD+ QLV+P Sbjct: 77 RAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPN 136 Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211 L +T+ + E V+ K+G+PPE ++ AL GDS DNIPG+PG+G KTA LLQ Sbjct: 137 ITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGL 196 Query: 212 GNLENILINASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE 265 G L+ + +I K + + E A LS +L ++TDV + + E L ++ Sbjct: 197 GGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNKEVAYLSYQLATIKTDVELELTCEQLEVQ 256 Query: 266 DCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTT 325 L+ K EF + V A +P Sbjct: 257 QPAAEELLGLFKKYEFKRWTADVEAGKWLQAKGAKPAA---------------------- 294 Query: 326 IKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385 Q +S++D+ ++ + I+ D+Y I++ + ++ W+ KLE Sbjct: 295 --KPQETSVADEAPEVTATV-----------------ISYDNYVTILDEETLKAWIAKLE 335 Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL 445 +F TD++D + + ++ + ++ V ++D S++ Sbjct: 336 KAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAYIPVAHDYLDAPDQISRERA----- 389 Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504 L LK E+E LK+G N+KYD+ +L YGI +RG D ML SY+L+S HD Sbjct: 390 ----LELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHD 445 Query: 505 IASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561 + S+A++WL + T +EI K+ + ++I+ + +A E+++V LQL L + P L Sbjct: 446 MDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQ 505 Query: 562 VEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 K L+V+E ++ P++ V+S++E G++ID +L S E++ L LE+ ++++GE+ Sbjct: 506 KHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEE 565 Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 FNLSS KQL ILF K KT G T+ + LE++ D P+ K ILE+R L+K+ Sbjct: 566 FNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELAL-DYPLPKVILEYRGLAKL 624 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 KSTY D LP IN +T RVHT Y A T TGRL+S +PNLQNIP++ + G++IR+AFI+P Sbjct: 625 KSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAP 684 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 ++SADYSQIELRI+AH+++ L F DIHR AAE+FG+ +E V+ + RR Sbjct: 685 EDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRS 744 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 AK INF +IYG+S F LA QL IPR EA Y+ YF R+PG+ EY+E+T+ ++ GYVE Sbjct: 745 AKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVE 804 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 T+ GRR++ +I S + R ERAAINAP+QG+AADI +RAMI+V L+ + +M Sbjct: 805 TLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRM 864 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++Q+HDELVFEV +++ ++ I H + + C L VPL V + NW + Sbjct: 865 IMQVHDELVFEVHRDDVDAVAKQI-HQLMENC---TRLDVPLLVEVGSGENWDQ 914 >gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15] Length = 959 Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 347/993 (34%), Positives = 552/993 (55%), Gaps = 74/993 (7%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + + L LVDGSS++YRA++A P L R +G P AI G NML KL R + A + Sbjct: 19 ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 73 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 A +FD TFR+++YP YK +R +P+ L Q+ + A +A G P + + G EADD+I Sbjct: 74 ACVFDAKGKTFRDDLYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILMVDGVEADDVI 133 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T A +EG + + DKDL QLV+ L +T+ E +D V+ K+G+PP K+V Sbjct: 134 GTLAERATREGVRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPGKIVD 193 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +L GD++DN+PG+P +G KTA L EYG+L++++ A IK EN+ + Sbjct: 194 YLSLIGDTVDNVPGVPKVGPKTAVKWLGEYGSLDSVIARAGEIKGVVG-ENLRNTLDWLP 252 Query: 242 LSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 R+L+ ++TD + +P LI + +L+ F F + + Sbjct: 253 KGRELLTVKTDCDLATEVPTFAALIDGGEDRAKLVDFFGRYGFKTWLREASGE------- 305 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 + T + G A + T +K + + Q S + E P ++ Sbjct: 306 ------SLPDTRSVGAARKAA----TPVKQYAPEAAAQQASLFDVEAPPAEV-------- 347 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 Y + ++ W++ L+ T ++D ++ + +++S Sbjct: 348 --------KYETVTTEAQLESWMRLLDASALVCLDTETTSIDPMQAQLVGLSLSVEPG-- 397 Query: 419 DTSFKVETIFIDLSVHTSQDSTG---KNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474 + +I ++ H D +G L +E +L+ +K + E+ K+G ++KYD Sbjct: 398 ------QACYIPVA-HRGPDVSGLEAAGQLAREAVLARMKPWLEDASRKKVGQHLKYDAH 450 Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPI 530 V +GI++RG D ML SYVL S R+ H + ++A++ L + T +E+ S I Sbjct: 451 VFANHGIALRGIAHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGASQIGF 509 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589 D++ + E+A E++++ L+L + PK+ + KL +VYE+++ P V+ +ME G+ Sbjct: 510 DEVPLDRATEYAAEDADITLRLHRAMYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVL 569 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID + L + S + + LL LE+ Y L+G+ FNL+SPKQ+G+I FT+LK P KT +G Sbjct: 570 IDAERLARQSTGLGQRLLELEQQAYALAGQPFNLNSPKQIGEIFFTQLKLPVIKKTASGA 629 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + L+++ D P+ K +L++R L+K+KSTY D LP +N +T RVHT Y A+ + Sbjct: 630 PSTDEEVLQKL-AEDYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV 688 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRLAS +PNLQNIP++T+ G++IR AF++P ++SADYSQIELRI+AH+++ L + Sbjct: 689 TGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLR 748 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F D+HR AAE+FGV +V+ + RR+AK INF +IYG+S F LA+ L I R A Sbjct: 749 AFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAK 808 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 YI RYF R+PG+ Y+++T+ + GYVET+FGRR+ +IN R ERAAIN Sbjct: 809 LYIDRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAIN 868 Query: 890 APIQGSAADITRRAMISVHKSLEDH--------KLATKMLLQIHDELVFEVPEEEITTAS 941 AP+QG+AAD+ + +M++V L+ + T+ ++Q+HDELV EVP+EE++ Sbjct: 869 APMQGTAADLIKLSMLAVQDWLDGSPSTGKPGAPMRTRQVMQVHDELVLEVPQEELSLVR 928 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M LRVPL + V NW+E Sbjct: 929 ERLPELMCGVA----ALRVPLVAEVGVGANWEE 957 >gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80] gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80] Length = 906 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 348/956 (36%), Positives = 536/956 (56%), Gaps = 71/956 (7%) Query: 33 LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92 +P NAI G NM+ ++ ++ + AVIFD TFR+E+Y YKA+RP +P+ L Sbjct: 6 IPTNAIYGVVNMIRSMM----RQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELR 61 Query: 93 PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152 Q+ + +A G+P + I+G EADD+I T A + G V I + DKD+ QLV Sbjct: 62 CQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNI 121 Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212 L +T+ +D + VI+K+GIPPE ++ AL GD +DNIPG+PG+G KTA LLQ G Sbjct: 122 TLINTMTNVVLDRQGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIG 181 Query: 213 NLENILINASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266 LE + N +I K + + E + A+LS +L ++ DV + + L+ + Sbjct: 182 GLEALYANLDKIAALGFRGSKTMAQKLEENRDNAKLSYQLATIKCDVELEESPQTLLKQT 241 Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326 + L+S L F + + LD T G+ E + +++ Sbjct: 242 PDRDALMSLYGKLAFKSWLTEL---------------LDGGT----GVVTADEQTKTSSV 282 Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386 S T+ ++ P+ I+ Y I+N +D Q W++KL+ Sbjct: 283 IVS--------TTATHAAAIPES---------PAAHIDRSQYQTILNEQDFQLWLEKLKQ 325 Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446 +F TD +D + + ++ + + + + V ++D +D Sbjct: 326 AELFAFDTETDNLDYMVANLVGMSFA-VAEGEAAYLPVAHDYLDAPQQLERDW------- 377 Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505 +++ LK E+E K+G N+KYD V+ RYG+ +RG D ML SYV +S HD+ Sbjct: 378 --VIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 435 Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+A ++L ++ +++ K+ + ++I+ + ++A E+++V L+L + P ++ Sbjct: 436 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHP--LI 493 Query: 563 E---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 E KL VY ++ P++ V+S++E TG+ ID LL S EI+ L LE+ Y+L+G+ Sbjct: 494 EQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLEQLEQKAYELAGQ 553 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 FNLSSPKQL ILF ++K P KT +G T + L+++ D P+ K ++E+R L+K Sbjct: 554 PFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAK 612 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 +KSTY D LP IN T RVHT Y A T TGRL+S +PNLQNIP++ + G++IR+AF++ Sbjct: 613 LKSTYTDKLPKMINPNTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVA 672 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 P K+++ DYSQIELRI+AH++ L F + DIH AAEI GV I++VS + RR Sbjct: 673 PHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRR 732 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++ Q GYV Sbjct: 733 RAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYV 792 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLAT 918 ETIFGRR+H EI S + R ERAAINAP+QG+AADI ++AM+ V + +E + Sbjct: 793 ETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRV 852 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 K+L+Q+HDELVFEV E ++ + ME A L VPL +NW + Sbjct: 853 KLLMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWDQ 904 >gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118] gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118] Length = 957 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 353/988 (35%), Positives = 549/988 (55%), Gaps = 55/988 (5%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K L LVDGSS++YRAF+A P L R G P +A G + +LQ+ RKE A + A Sbjct: 11 KPKTLLLVDGSSYLYRAFHAMPDL-RAVPGDPSSAPTGAIRGMINMLQSLRKEVPADYAA 69 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 IFD TFR+ +YP+YKA+R +P+ L Q+ + + G + + G EADD+I Sbjct: 70 CIFDDKGPTFRDALYPEYKAHRSPMPDDLRSQIEPIHEVVRLMGWKVLAVPGVEADDVIG 129 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A ++G V + S DKDL QLV+ + DT+ + D+ V ++G+PP+ MV Sbjct: 130 TLAVTAARQGIEVIVSSGDKDLAQLVNSHITIIDTMNGRRRDVAGVEAEFGVPPQLMVDF 189 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 Q L GD IDN+PG+P +G KTAA LQEYG+L+ ++ NA +IK EN+ + + L Sbjct: 190 QTLVGDVIDNVPGVPKVGPKTAAKWLQEYGSLDAVVANADQIK-GVVGENLKKSLDWLPL 248 Query: 243 SRKLVMLRTD------VPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 R+L+ ++TD +P L+ + + L F + F K + R Sbjct: 249 GRQLLTIKTDCDLDGWMPDLPALDSIATGTMDTGALAIFYEKYGF-KGLARTLGGGAASV 307 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 A+ + E + R T + F + I S Sbjct: 308 ASKASSGFGVGPKERSDAGSDPNSVRQLTREPGLFDEPEAASDPIPSS------------ 355 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 + N Y I+ + +W+ K++ + T ++D ++ + I+ S Sbjct: 356 ------VTNLHYDTILTWEAFDRWLAKVQAADLVALDTETTSLDEMRAQIVGISFSVTPG 409 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 E +I L+ H D+ + L ++L+ LK + ++ K+G ++KYD+ V Sbjct: 410 --------EAAYIPLA-HAYPDAPAQLPLA-DVLAKLKPWLQDASHKKLGQHVKYDRHVF 459 Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 +GI ++G+ D ML SYVL+ + H +AS+A++ L + +++ + I D+ Sbjct: 460 ANHGIEVQGYAHDTMLQSYVLEVTKP-HGLASLAERHLGRSGISFEDLCGKGANQICFDQ 518 Query: 533 ISDSQVQEHAIENSNVILQ----LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + +Q +++ E+S++ L LW LL+ +KL +YE L+ + + ++E G+ Sbjct: 519 VDIAQAAQYSCEDSDMTLDVHRALWPLLQAN---DKLRFIYE-LEIASSEALYRIERNGV 574 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ID L S E+ + +L LE+ ++L+G+ FNLSSPKQ+ +I FTKL P KT TG Sbjct: 575 LIDGPTLAVQSHELGQRILQLEKEAHELAGQPFNLSSPKQIAEIFFTKLGLPVVKKTPTG 634 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L+++ D P+ ILE R L+K+K TY D L + RT RVHT Y+ A Sbjct: 635 SPSTDDEVLQKL-AEDYPLPAKILEHRGLAKLKGTYTDKLAQLAHPRTGRVHTHYAQAIA 693 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRL+SLEPNLQNIP++T G+++R AF++PP + SADYSQIELRI+AHI+ L Sbjct: 694 VTGRLSSLEPNLQNIPVRTPEGRRVREAFVAPPGSVIASADYSQIELRIMAHISGDAALL 753 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F + +D+HR A+EIFGV+ +V+ + RR+AK INF +IYG+S + LA L I + A Sbjct: 754 LAFHDGIDVHRATASEIFGVDRAQVTSEQRRYAKVINFGLIYGMSAYGLAKALSIDNTAA 813 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +YI+RYF R+PG+ Y+E T+ ++ GYVET+FGRR++ EINSP R+ ERAAI Sbjct: 814 KNYIERYFDRYPGVKNYMEHTRALAKRQGYVETVFGRRLYLPEINSPNGPRRSGAERAAI 873 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AAD+ + +M+ V + +++ K ATKM++Q+HDELVFEVPE EI + H + Sbjct: 874 NAPMQGTAADLIKLSMVKVQQVIDEEKRATKMIMQVHDELVFEVPESEI----DWVRHEV 929 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQEEN 976 + +L+VPL + V NW + + Sbjct: 930 PRLMAGVAHLKVPLLAEVGVGANWDKAH 957 >gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9] gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9] Length = 937 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 361/987 (36%), Positives = 536/987 (54%), Gaps = 88/987 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRA++A P + DG P A+ G NML LL+ E H AV Sbjct: 21 ENPLILIDGSSYLYRAYHAAPNFTNS-DGEPTGAVYGVVNMLRSLLRQFSTE----HIAV 75 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR++IYP+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 76 IFDAKGKTFRDDIYPEYKANRPPMPDDLRGQIEPLHAVIKAMGLPLIAISGVEADDVIGT 135 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A K G V I + DKD+ QLV L +T+ + + V++K+GI PE ++ Sbjct: 136 LATQASKAGMPVLISTGDKDMAQLVDENVTLINTMTDVVMGPAGVVEKFGIGPELIIDYL 195 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LL G L+ I N I K + + + Sbjct: 196 ALMGDKVDNIPGVPGVGEKTAKALLTGVGGLDAIYDNLDAIPALGFRGSKTMPKKLADNK 255 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD---- 293 E A +S +L ++ DV + L+ + + L S L+F + ++ + D Sbjct: 256 EAAYMSYELATIKLDVELDSAPHELLKTEPDTDELTSLFGKLQFRRWLSEMLDGSDGKIV 315 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 D EPV E K +A TI S + ++ D+ S Sbjct: 316 ADEKASEPV-------EKKVVA--------PTIDRSGYETILDEVS-------------- 346 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 + W+ L +F TD++D + + ++ + Sbjct: 347 -----------------------FKTWLDTLTAADVVAFDTETDSLDYMTANLVGVSFA- 382 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 +++ V ++D +D +L+ LK E+ K+G N+K+D Sbjct: 383 VEEGKAAYVPVAHDYLDAPEQLDRDW---------VLAQLKPLLEDPAQNKVGQNLKFDM 433 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 +L RY I+M+G + D ML SYV +S HD+ S+A ++L + + +E+ K + Sbjct: 434 SILARYDINMQGIKYDTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLT 493 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGI 588 ++I +A E++++ L+L LL K+ E+L V+E ++ P++ V+S++E TG+ Sbjct: 494 FNQIDLDVAGPYAAEDADITLRLHNLLNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGV 553 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ID LL S EI+ L LE Y+++ ++FNLSSPKQL ILF K+ P KT +G Sbjct: 554 LIDSMLLSAQSTEIAARLDELETKAYEIAEQEFNLSSPKQLQAILFEKMGLPILKKTPSG 613 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L+++ D P+ K +LE+R L+K+KSTY D LP +N T RVHT Y A T Sbjct: 614 APSTNEEVLQELAL-DYPLPKILLEYRGLAKLKSTYTDKLPKMVNPSTGRVHTSYHQAVT 672 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ G++IR+AFI+P K+++ DYSQIELRI+AH++ L Sbjct: 673 ATGRLSSSDPNLQNIPVRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALL 732 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F+ DIH AAEI G+ IE V+ + RR AK INF +IYG+S F LA QL + R+EA Sbjct: 733 EAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEA 792 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 DY+ YF R+PG+ EY+E T+ + GYVET+FGRR++ +I S R ERAAI Sbjct: 793 QDYMNVYFERYPGVLEYMESTRIHASEQGYVETLFGRRLYLPDIKSRNGIRRKAAERAAI 852 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI +RAM+ V + +E + ++L+Q+HDELVFEV E E+ S + Sbjct: 853 NAPMQGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDELVFEVQESELDAVSADVRRL 912 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A L VPL + +NW E Sbjct: 913 MELAA----ELDVPLIADTGSGDNWDE 935 >gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024] Length = 881 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 346/933 (37%), Positives = 527/933 (56%), Gaps = 68/933 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 QG+AADI +RAMI+V L+ + +M++Q+H Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVH 881 >gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 957 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 364/999 (36%), Positives = 558/999 (55%), Gaps = 77/999 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ K +G P A+ G NML L+ SH AV Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A GIP I I+G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A G V I + DKD+ QLV+ L +T+ +D E VI K+GIPPE ++ Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+ G+G KTA LLQ G+L+ I N ++ K + Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS L ++TDV + + E L+++ L+ EF + +N V + A Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N PV T+N E +I + + + + + +EQT K+ ++R Sbjct: 296 N--PV------TQNS----EEKIPNN-------YQATASVPQAVETEQTFAKVEIDR--- 333 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413 Y + + +Q W++K+ + + TD +D+ + + ++ Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385 Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFL 463 L K+ + + + + ++ +T K++ L+ LK EN Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---K 518 KIG NIKYD + +G+ + G D ML SY L+S GR H++ +A ++L + + Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIEFE 503 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKP 575 EI K+ + DKI+ ++A E+++V ++L +L P+L EK L+ ++ ++ P Sbjct: 504 EIAGKGKNQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPEL--EKAPTLVKLFNEIEMP 561 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 +++V+S++E G+ ID + L S EI + L LE+ ++ +GE FNL+S KQL +ILFT Sbjct: 562 LVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSELEQLVHSEAGEVFNLASTKQLQEILFT 621 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 KL P KT G T + L+++ + + K ++E R LSK+KSTY D LP IN++ Sbjct: 622 KLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQK 681 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T RVHT Y A T TGRL+S +PNLQNIPI+ + G++IR+AFI+ K+++ADYSQIEL Sbjct: 682 TGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIEL 741 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH+A + F DIHR AAEIFG+ +++V+ + RR AK INF +IYG+S F Sbjct: 742 RIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEF 801 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 L+ QL I R++A Y++ YF R+P + +++ + + GYVET+FGRR++ EI S Sbjct: 802 GLSNQLGISRADAKKYMELYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSS 861 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + R ER AINAP+QG+AADI + AMI + K++ + KM++Q+HDELVFEV EE Sbjct: 862 NAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAIRGDE-NIKMIMQVHDELVFEVKEE 920 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + SQ+I MEKA I L+VPL + V +NW E Sbjct: 921 LVEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955 >gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20] gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 957 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 364/997 (36%), Positives = 555/997 (55%), Gaps = 73/997 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ K +G P A+ G NML L+ SH AV Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR E++ YK++RP +P+ L Q+ + +A GIP I I+G EADD+I T Sbjct: 61 VFDAKGKTFRGELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A G V I + DKD+ QLV+ L +T+ +D E VI K+GIPPE ++ Sbjct: 121 LAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIDKYGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+ G+G KTA LLQ G+L+ I N ++ K + Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS L ++TDV + + E L+++ L+ EF + +N V + A Sbjct: 241 DAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N PV T+N E +I + + + + + +EQT K+ ++R Sbjct: 296 N--PV------TQNS----EEKIPNN-------YQATASVPQAVETEQTFAKVEIDR--- 333 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413 Y + + +Q W++K+ + + TD +D+ + + ++ Sbjct: 334 --------SRYETVTTMEQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGVSFGLANGD 385 Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFL 463 L K+ + + + + ++ +T K++ L+ LK EN Sbjct: 386 ACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFELAKKQLNLTACLTELKPLLENADVK 445 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---K 518 KIG NIKYD + +G+ + G D ML SY L+S GR H++ +A ++L + + Sbjct: 446 KIGQNIKYDLTIFANHGVQVAGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIEFE 503 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMI 577 EI K+ + DKI+ ++A E+++V ++L +L P+L L+ ++ ++ P++ Sbjct: 504 EIAGKGKNQLTFDKIAIDVASKYAAEDADVTMKLHQVLVPELDKTPTLVKLFNEIEMPLV 563 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 +V+S++E G+ ID + L SAEI + L LE+ ++ +GE FNL+S KQL +ILFTKL Sbjct: 564 EVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQLVHSEAGEVFNLASTKQLQEILFTKL 623 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 P KT G T + L+++ + + K ++E R LSK+KSTY D LP IN++T Sbjct: 624 GLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMINQKTG 683 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 RVHT Y A T TGRL+S +PNLQNIPI+ + G++IR+AFI+ K+++ADYSQIELRI Sbjct: 684 RVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRI 743 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 +AH+A + F DIH AAEIFG+ +++V+ + RR AK INF +IYG+S F L Sbjct: 744 MAHLANDEGMITAFAEGKDIHCATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGL 803 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 + QL I R++A Y++RYF R+P + +++ + + GYVET+FGRR++ EI S + Sbjct: 804 SNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNA 863 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 R ER AINAP+QG+AADI + AMI + K++ KM++Q+HDELVFEV EE I Sbjct: 864 MRRKAAERVAINAPMQGTAADIIKVAMIDIDKAIRGDD-NIKMIMQVHDELVFEVKEELI 922 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 SQ+I MEKA I L+VPL + V +NW E Sbjct: 923 EHYSQLIKAEMEKA----IQLKVPLIAEVGVGDNWDE 955 >gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34] gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34] Length = 923 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 346/983 (35%), Positives = 543/983 (55%), Gaps = 79/983 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRA++A P + DG P AI G NML +L+ E H AV Sbjct: 6 ENPLILIDGSSYLYRAYHAAPNFTNS-DGEPTGAIYGVVNMLRSMLRQFSTE----HIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+++YP+YKANRP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 61 IFDAKGKTFRDDMYPEYKANRPPMPDDLRSQIEPLHAVIKAMGLPLIAISGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + A ++G V I + DKD+ QLV L +T+ + +D V+ K+GI PE ++ Sbjct: 121 LSTQASQQGMPVLISTGDKDMAQLVDQNVTLINTMTDVVMDPAGVVDKFGIGPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LL G L+ + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGEKTAKALLTGIGGLDTLYDNLDDIAALGFRGSKTMAKKLIDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A +S KL ++ DV + + + L + L L+F + + + Sbjct: 241 EAAYMSYKLATIKLDVELDVTPDELRKGVPDTDVLTELFGKLQFRRWLTEM--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++ ++ + +A E ++ + +E+ K Sbjct: 292 --------LDGSDGRIVADE-------------------KSGDVPAEK-----------K 313 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y +++ + W+++L+ + +F TD +D + + ++ + +++ Sbjct: 314 AVAPTIDRSGYETVLDKESFATWLEQLKAAEAFAFDTETDGLDYMTANVVGVSFA-IEEG 372 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + ++D +D +L LK E+ KIG N+K+D ++ Sbjct: 373 KAAYVPLAHDYLDAPAQLDRDW---------VLEQLKPLLEDPKQAKIGQNLKFDASIVA 423 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 RYGI M+G D ML SYV +S HD+ S+A ++L + + +E+ K + ++I Sbjct: 424 RYGIEMQGIVFDTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLTFNQI 483 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q +A E++++ L+L L PK+ + KL HV+E ++ P++ V+S+ME TG+ +D Sbjct: 484 DLEQAGPYAAEDADITLRLHNTLYPKVEADDKLKHVFENIEMPLVPVLSRMERTGVYVDS 543 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 LL S EI+ L +E+ ++++ ++FNLSSPKQL ILF K+ P KT +G T Sbjct: 544 MLLGAQSTEIAVRLDEIEKKAFEIAEQEFNLSSPKQLQAILFEKMGLPVLKKTPSGTPST 603 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K +LE+R L+K+KSTY D LP +N T RVHT Y A T TGR Sbjct: 604 NEEVLQELAL-DYPLPKLLLEYRGLAKLKSTYTDKLPKMVNPATGRVHTSYHQAVTATGR 662 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AF++ K+++ DYSQIELRI+AH++ L F Sbjct: 663 LSSSDPNLQNIPVRNEEGRRIRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFR 722 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH AAEI ++IE VS + RR AK INF +IYG+S F LA QL + R+EA +Y+ Sbjct: 723 HGKDIHAATAAEILSLDIENVSSEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQNYM 782 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E T+N + GYVET+FGRR++ +I S R ERAAINAP+ Sbjct: 783 NVYFERYPGVLEYMESTRNAASEQGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPM 842 Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI + AMI+V ++ ++L+Q+HDELVFEV E + + + ME+A Sbjct: 843 QGTAADIIKLAMIAVDDWVQQQPEGDVRLLMQVHDELVFEVKESALEAVTASVKALMEQA 902 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPL + +NW + Sbjct: 903 AM----LDVPLIADTGYGDNWDQ 921 >gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7] gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7] Length = 917 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 356/986 (36%), Positives = 539/986 (54%), Gaps = 98/986 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G P A+ G NML L RK+ S FAV+FD Sbjct: 10 LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RKQYPDSPFAVVFD 64 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ +YKANRP +P+ L Q+ + + +A G+P + ++G EADD+I T Sbjct: 65 AKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 124 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ ++D++ V +K+G+ PE ++ AL Sbjct: 125 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALM 184 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENI---LINASRIKQKKRRENILE 235 GD +DNIPG+PG+G KTA LL Y +L+ + I ++ K EN Sbjct: 185 GDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEEN--- 241 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E A LS +L ++TDV + + L+ L + LI+ + LEF ++ + Sbjct: 242 -REQAFLSYQLATIKTDVELDVQLDQLYPGEPQREALIALYRELEFKNWLDDLLREAK-- 298 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 + + I+ E+D D + + F + Sbjct: 299 ---------EAGESGEAETPIQAEVDYDVVLDQAGFDA---------------------- 327 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 W++KLE +F T ++DA ++ + ++ + + Sbjct: 328 ------------------------WLKKLEQAELIAFDTETTSIDAQQAQVVGVSFA-VK 362 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + + ++ + +D+ +L LK E+ LK+G + KYD V Sbjct: 363 EGEAAYVPLAHSYMGVPDQLERDA---------VLRALKPLLEDPQKLKVGQHAKYDINV 413 Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 L I+M+G D ML SYVLDS + HD+ S+A K+L ++ ++I + Sbjct: 414 LANASTPIAMQGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 473 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588 D+I+ Q +A E+++V L+L L KL + L V ++ P++ V++++E G Sbjct: 474 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 533 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D +LL S E+ + +++LE YDL+G++FNL SPKQLG IL+ KL P +KT TG Sbjct: 534 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 593 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q T L ++ D + K I+++R +SK+KSTY D LP IN RT R+HT Y A Sbjct: 594 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 653 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIPI+T G++IR+AFI+P KL++ADYSQIELRI+AH+AK L Sbjct: 654 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFIAPQGYKLLAADYSQIELRIMAHLAKDEGLL 713 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F + LD+HR AAE+FGV +E VS RR AK INF +IYG+S F LA Q+ + R EA Sbjct: 714 DAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 773 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI RYF R+PG+ Y+E+T+ + G+VET+FGRR++ EI+S ++R ER AI Sbjct: 774 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 833 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI +RAM++V L + L +++LQ+HDELV EV E+ + + I M Sbjct: 834 NAPMQGTAADIMKRAMVAVDNWLRESGLDARVILQVHDELVLEVREDLVEQVREGIRPLM 893 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 A +L VPL V + +NW E Sbjct: 894 SGAA----SLDVPLVVEAGIGSNWDE 915 >gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] Length = 914 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 351/981 (35%), Positives = 545/981 (55%), Gaps = 80/981 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L R +G P A+ G NML +L R + A++ A Sbjct: 2 QNTLLLVDGSSYLYRAFHALPDL-RNKEGAPTGALYGIINMLRRL----RSDFPAAYIAC 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++Y +YKA R +PE L Q+ + A +A G P I ++G EADD+I T Sbjct: 57 VFDAKGKTFRDDLYAEYKAQRASMPEDLARQVEPIHEAVRAMGWPLIMVEGVEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G I + DKDL QLV+ L +T+ E++D + V+ K+G+PPE++V Sbjct: 117 LAVDAVRHGMKAVISTGDKDLAQLVNDDVMLINTMSNERLDRDGVLAKFGVPPERIVDYL 176 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 L GD++DN+PG+ +G KTA L +YG L+ I+ NA+ I EN+ + + + Sbjct: 177 TLIGDTVDNVPGVSKVGPKTAVKWLTQYGTLDGIVENAANIG-GAVGENLRKALDWLPQA 235 Query: 244 RKLVMLRTDVP-----ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 + L+ ++TD ++IP E L+ ++ + ++I F + R AT AA+ Sbjct: 236 KVLITVKTDCDLVDHMVSIP-ESLMAKEQDPAKMIDLYARFGFKTWL-REAT-----AAS 288 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E V I T D Q+ ++ P + Sbjct: 289 AEEV-------------IATAAPADA------------QSGLFDAPAAPAE--------- 314 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 Y I+ D+ +W+ ++ S T ++ ++ + I++ + Sbjct: 315 -------QRYDTILTEADLDRWLAIIDAAALTSIDTETTSLVPLQAQLVGISLCC-EPGV 366 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 V + D V S++ +L ++ + E+ K+G N+KYD + Sbjct: 367 AAYIPVAHRYADAPVQLSREL---------VLGKMQAWLEDPAKAKVGQNLKYDSHIFAN 417 Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 +GI++RG D ML SYV +S RS HD+ S+A + L T +E+ S I D++ Sbjct: 418 HGITLRGIAHDTMLESYVFESHRS-HDMDSLALRHLGRTTITFQEVCGKGASQICFDQVD 476 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 ++ E+A E++++ LQL + P++ E LL VYE+++ P V+ ++E G+ ID Sbjct: 477 IARATEYAAEDADITLQLHQAMLPQVTSDEGLLFVYEKIEVPTAVVLQKIERNGVLIDTG 536 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 +L+ S E+ K +L +E + Y+L+G+ FNL+SPKQ+G+I F KL+ P KT +G T Sbjct: 537 ILQVQSHELGKRMLEIETSAYELAGQPFNLNSPKQIGEIFFEKLQLPVVKKTPSGAPSTD 596 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + L ++ D P+ K +LE+R LSK+KSTY D LP I+ T RVHT Y+ +TGRL Sbjct: 597 EEVLAKL-AEDYPLPKVLLEYRSLSKLKSTYTDKLPKMIDPTTGRVHTNYAQTVAVTGRL 655 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 AS EPNLQNIPI+T G++IR AF++P ++SADYSQIELRI+AH++ + + F + Sbjct: 656 ASNEPNLQNIPIRTAEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDANMLRAFAD 715 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 +DIHR AAEIF V+ + RR+AK INF +IYG+S F LA L I R A YI Sbjct: 716 GIDIHRATAAEIFSTGAADVTTEQRRYAKVINFGLIYGMSAFGLAGNLGIERGAAQSYID 775 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 +YF RF G+ +++++T+ + +GYVET+FGRR+ EINSP R ERAAINAP+Q Sbjct: 776 KYFARFSGVKQFMDETRLKAKAHGYVETVFGRRLWLPEINSPNGPRRQGAERAAINAPMQ 835 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AAD+ + +M++V LE L + M++Q+HDELV EVP+EE+ +++ + Sbjct: 836 GTAADLIKLSMVAVQGWLETDGLKSLMVMQVHDELVLEVPQEEL----ELVRVKLPALMA 891 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 L+VPL + + NW E Sbjct: 892 GVAELKVPLTAEVGIGKNWDE 912 >gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771] Length = 564 Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust. Identities = 278/533 (52%), Positives = 381/533 (71%), Gaps = 5/533 (0%) Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIA 506 ++ L LK E+E LK+ N+KYD L+L RYGI R F+D ML+SYVLD+G +H + Sbjct: 30 RDALPRLKALLEDESVLKVAQNLKYDYLLLKRYGIETRSFDDTMLISYVLDAGTGAHGMD 89 Query: 507 SIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 +++K+L +T K++ S K+++ D + + +A E+++V L+LWL+L+P+L Sbjct: 90 PLSEKFLGHTPIPYKDVAGSGKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAA 149 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 L VYERL++P++ V+++ME G+ +D+ +L ++S E+++ LE+ IY L+GE+FN+ Sbjct: 150 GLTSVYERLERPLLPVLARMEARGVTVDRQILSRLSGELAQGAARLEDEIYTLAGERFNI 209 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 SPKQLGDILF K+ G+KTKTGQW T+A LE + + + I++WRQL+K+KST Sbjct: 210 GSPKQLGDILFGKMGLAGGSKTKTGQWSTSASVLEDLAAAGFELPRKIVDWRQLTKLKST 269 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y D+LP +++ T+RVHT YSLAST TGRL+S EPNLQNIP++T G+KIR AFIS P Sbjct: 270 YTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGH 329 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 KLISADYSQIELR+LAH+A+I L + FE+ +DIH M A+E+FGV +E + ++RR AK Sbjct: 330 KLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKA 389 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 INF IIYGIS F LA QL I RSEA DYIK+YF RFPGI +Y+E K R GYVETIF Sbjct: 390 INFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIF 449 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--TKML 921 GRRI+Y EI S S+R NERAAINAPIQGSAAD+ RRAMI + +L LA +ML Sbjct: 450 GRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKMEPALAQAGLAERVRML 509 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LQ+HDEL+FEV +E++ A IIV ME A +P + +RVPL+V+ + + NW E Sbjct: 510 LQVHDELIFEVEDEDVDKAMPIIVSVMENATMPALEMRVPLRVDARAATNWDE 562 >gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aeruginosa PAO1] gi|81539387|sp|Q9HT80|DPO1_PSEAE RecName: Full=DNA polymerase I; Short=POL I gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas aeruginosa PAO1] Length = 913 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 357/986 (36%), Positives = 539/986 (54%), Gaps = 98/986 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G P A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RKQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ +YKANRP +P+ L Q+ + + +A G+P + ++G EADD+I T Sbjct: 61 AKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ ++D++ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENI---LINASRIKQKKRRENILE 235 GD +DNIPG+PG+G KTA LL Y +L+ + I ++ K EN Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEEN--- 237 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E A LS +L ++TDV + + ++ L + LI+ + LEF ++ + Sbjct: 238 -REQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELEFKNWLDDLLREAKEA 296 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 N E I+ E+D D + + F + Sbjct: 297 GENGEAET-----------PIQAEVDYDVVLDQAGFDA---------------------- 323 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 W++KLE +F T ++DA ++ + ++ + + Sbjct: 324 ------------------------WLKKLEEAELIAFDTETTSIDAQQAQVVGVSFA-VK 358 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + + ++ + +D+ +L LK E+ LK+G + KYD V Sbjct: 359 EGEAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409 Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 L I++RG D ML SYVLDS + HD+ S+A K+L ++ ++I + Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588 D+I+ Q +A E+++V L+L L KL + L V ++ P++ V++++E G Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D +LL S E+ + +++LE YDL+G++FNL SPKQLG IL+ KL P +KT TG Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q T L ++ D + K I+++R +SK+KSTY D LP IN RT R+HT Y A Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVA 649 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+AK L Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F + LD+HR AAE+FGV +E VS RR AK INF +IYG+S F LA Q+ + R EA Sbjct: 710 DAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI RYF R+PG+ Y+E+T+ + G+VET+FGRR++ EI+S ++R ER AI Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI +RAM++V L++ L +++LQ+HDELV EV E+ + + I M Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREDLVEQVCEGIRPLM 889 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V V +NW E Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDE 911 >gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] Length = 914 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 362/980 (36%), Positives = 539/980 (55%), Gaps = 81/980 (8%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRA++A P LS G+ A+ G NML L R + + A++ Sbjct: 4 NTLILVDGSSYLYRAYHAMPSLSNSQ-GMLTGAVYGVTNMLKSL----RADYQPIYVAIV 58 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD FR+E+YPDYK NRP +PE L+ Q+ +A G P + G EADD+I T Sbjct: 59 FDAKGKKFRHELYPDYKKNRPPMPEELVVQISSTHDMVRALGFPLLMENGVEADDVIGTL 118 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 AE G I S DKD QLV+ + L +T+K ++D+E V +K+GIPP +V + Sbjct: 119 AKQAEAVGMQTLIFSNDKDFAQLVNESITLINTMKNTRLDVEGVTEKFGIPPALIVDYLS 178 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD DNIPG+ IG KTA LL+ YG+LE I+ N +IK K +N+ E L+R Sbjct: 179 LIGDKSDNIPGVKTIGPKTAIKLLKNYGSLEAIIENIPQIK-GKVADNLREALSYLPLTR 237 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 +L+M++ DVP+ + L L + +L L F K + + T+ D Sbjct: 238 QLLMIKCDVPLLNTPQQLKLTTPDVDKLRELYTKLAFKKWLAELNTSPDSS--------- 288 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 I++ +GI+ + + F + TS Sbjct: 289 -ISSFRKEGISHSED---------ASFEGVEGGTS------------------------- 313 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 + Y I+ D+ W+ +L +F T ++D ++ + ++ + Q + ++ Sbjct: 314 HPKYHTILTQADLDDWLNRLNQAELFAFDTETTSLDYLQAQIVGVSFAV--QVGEAAY-- 369 Query: 425 ETIFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 V + D G + +L+ LK EN KIG N+KYD VL +GI Sbjct: 370 --------VPLAHDYLGAPQQLSCDNVLAVLKPLLENPKKRKIGQNLKYDAHVLANHGIH 421 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQV 538 ++G D ML SYVL+S + HD+ S+AQ +L + T +++ K + ++I Sbjct: 422 LQGMAFDTMLESYVLNS-TTKHDMDSLAQIYLQKTTITFEDVAGKGKKQLSFNQIPLEHA 480 Query: 539 QEHAIENSNVILQL----WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 +A E++++ LQL W L+ + KL +++ L+ P+I V+ +ME G++ID L Sbjct: 481 TPYACEDADITLQLHQNLWEQLQNR---PKLERIFDDLEMPLIPVLIRMERHGVKIDATL 537 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L Q SAE++ L LE+ Y+ +G +FNL+SPKQL ILF KL P KT T Sbjct: 538 LHQQSAELATRLQQLEQAAYEEAGTEFNLNSPKQLQTILFDKLSLPVLKKTPKKDPSTAV 597 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 + LE++ D P+ + IL +R LSK+KSTY D+LP IN +T RVHT Y A T TGRL+ Sbjct: 598 EVLEELAI-DYPLPQLILIYRSLSKLKSTYTDTLPQQINPKTGRVHTSYHQAVTTTGRLS 656 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S PNLQNIPI++ G++IR+AFI+P L++ADYSQIELRI+AH+++ L Sbjct: 657 STNPNLQNIPIRSAEGRRIRQAFIAPKGYCLLAADYSQIELRIMAHLSEDEKLLSALTAG 716 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH+ VAAE+F + +++V+ + RR AK +NF ++YG+ F LA QL I R +A Y+ Sbjct: 717 EDIHKAVAAEVFDLAMDEVTTEQRRQAKAVNFGLMYGMQAFGLAKQLGIERHQAQIYMDA 776 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF R+PG+ Y++ + +Q GYVET+FGRR++ EI + R ER AINAP+QG Sbjct: 777 YFARYPGVKAYMDDMRVLAKQQGYVETVFGRRLYIPEIKTRHIGRRQAAERTAINAPMQG 836 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AAD+ +RAM++V +E L KML+Q+HDELVFE+ E I A I+ +M + Sbjct: 837 TAADLIKRAMLTVDDWIEKSGLDVKMLMQVHDELVFEIAETVIEEAKVAIIEAMTQVA-- 894 Query: 955 KINLRVPLKVNIKVSNNWQE 974 L+VPL V+I + NW E Sbjct: 895 --ELKVPLIVDIGIGKNWDE 912 >gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893] gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893] Length = 911 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 360/978 (36%), Positives = 547/978 (55%), Gaps = 87/978 (8%) Query: 7 LFLVDGSSFIYRAFYATPLL--SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + LVDGSS+++RA++A P L S+ H P AI G +M+ KL Q+ S V+ Sbjct: 9 VVLVDGSSYLFRAYHALPPLMTSKSH---PTGAIKGVISMIRKLEQDFP----GSKMVVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFRN++Y DYKA RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 62 FDAKGKTFRNDLYEDYKATRPPMPDDLAVQIQPIHDMVRAMGLPLLIVSGVEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 + A +G V + + DKD+ QLVS L +T+ + ++D + V++K+GI P+++V A Sbjct: 122 AHEATSKGIDVVVSTGDKDMAQLVSDHVTLINTMTDTRMDRDGVVEKFGIGPDQIVDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD +DNIPG+ G KTA LQ + NL+NI+ ++ +K K E + E ET LSR Sbjct: 182 LVGDKVDNIPGVNKCGPKTAVKWLQTWDNLDNIIEHSDEVK-GKIGEYLREATETLPLSR 240 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 +L ++TDV + LE L L + +L+ + E I A + D+A Sbjct: 241 QLATIKTDVDLEFGLEDLKLRTQDDSQLLELFREYELRSWI---AELENGDSA------- 290 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 D +T+N ++ + ++ + E+T Sbjct: 291 DEKSTDN---------------------AVDNSSNPASKEKT------------------ 311 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 YT + + ++ W+ +L+ + F T+T + + +S + + ++ Sbjct: 312 ---YTVVTDQAELDSWIDRLKK--APLFAFDTETTSLRYMDADVVGVSFAIEPGEAAY-- 364 Query: 425 ETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 V D G L ++ +LS LK E+ K+G N+KYDK VL +GI+ Sbjct: 365 --------VPFGHDYMGAPEQLDRDTVLSQLKPLLEDPKKAKLGQNLKYDKNVLANHGIN 416 Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQV 538 + G ED ML SYVL+S S HD+ S+A ++L + T + I + ++I Q Sbjct: 417 LNGIAEDTMLESYVLNSVGSRHDMDSLAMQYLGEQTITFESIAGKGAKQLTFNQIELEQA 476 Query: 539 QEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ L+L LRP+L +L VYE++D P++ V+S+ME G I L++ Sbjct: 477 GPYAAEDADITLRLHQALRPQLEKTGRLQEVYEKIDLPLVPVLSRMEQRGAMISASTLRK 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E+++ + LE+ ++ +GE FNL SPKQL I + K+ P KT G +TA+ + Sbjct: 537 HSQELAERMAELEKEAHEEAGESFNLGSPKQLQAIFYDKMGLPVVKKTPKGA-PSTAEPV 595 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 Q ++ + + ILE R LSK+KSTY D+LP I+ RT R+HT Y A T TGRL+S E Sbjct: 596 LQELAHEHTLPRLILEHRSLSKLKSTYTDTLPELIHHRTGRIHTSYHQAVTATGRLSSSE 655 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+++ G++IR+AF++P KL++ADYSQIELRI+AH++ L FE DI Sbjct: 656 PNLQNIPIRSEQGRRIRQAFVAPEGYKLVAADYSQIELRIMAHLSGDKGLLTAFEKGEDI 715 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FGV ++ VS RR AK INF +IYG+S F L+ QL + R +A +YI RYF Sbjct: 716 HRATAAEVFGVAVDDVSGDQRRSAKAINFGLIYGMSAFGLSRQLDVGRHQAQEYIDRYFE 775 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+P + +Y++ + +GYVET +GRR++ EIN+ ++ ER AINAP+QG+AA Sbjct: 776 RYPAVLKYMDNIRKQAHDDGYVETFYGRRLYLPEINARNKQMQQAAERTAINAPMQGTAA 835 Query: 898 DITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 DI +RAM+SV L E H+ +M+LQ+HDEL+ EV E + T I +EK Sbjct: 836 DIIKRAMVSVEDWLQEHHQDDARMILQVHDELILEVRESAVDT----IREGLEKRMSAAA 891 Query: 957 NLRVPLKVNIKVSNNWQE 974 +L VPL V V NNW E Sbjct: 892 SLDVPLLVEAGVGNNWDE 909 >gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218] Length = 932 Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust. Identities = 355/984 (36%), Positives = 544/984 (55%), Gaps = 72/984 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NA+ G NM+ ++ ++ + AV Sbjct: 6 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVINMVRAMM----RQFASDRMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E+YP+YKA RP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 61 VFDAKGKTFRDELYPEYKAQRPPMPDDLRCQIEPLHNVIRAMGLPLLSIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + A + G V I + DKD+ QLV L +T+ +D + VI+K+GIPPE ++ Sbjct: 121 LAHQASQAGIPVLISTGDKDMAQLVDDNVTLINTMTNVVMDRDGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L + N +I K + + + Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTALYDNLDKIADLGFRGSKTMAKKLEDNR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A LS +L ++ DV + E L+ + LI L F +N + Sbjct: 241 ANAELSYELATIKLDVALDCTPETLLKATPDRDALIELYGQLSFKSWLNEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS-KINSEQTPQKLFLERLQ 356 +E + E ++ SQ + ++D + KI+ Q Sbjct: 292 -LEGGTGVVEAAEKSAASVAVS-------GASQAAPMADSVAVKIDRSQ----------- 332 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 Y IV+ +W+ KL + +F TD++D + + ++ + + + Sbjct: 333 -----------YETIVDEAAFNRWLDKLRSAEVFAFDTETDSLDYMVANLVGVSFA-VAE 380 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + V ++D +D L+ LK E+ K+G N+KYD +L Sbjct: 381 GEAAYVPVAHDYLDAPQQLDRDWA---------LAQLKPILEDAQQAKVGQNLKYDASIL 431 Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 RY I+M+G D ML SYV +S HD+ S+A +++ ++ +++ K+ + ++ Sbjct: 432 ARYDINMQGIAHDTMLASYVYNSVGGKHDMDSLALRFMQHSCISFEQVAGKGKNQLTFNQ 491 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591 I Q +A E+++V L+L L P L + KLL VY ++ P++ V+S++E TG+ I+ Sbjct: 492 IDLEQAAPYAAEDADVTLRLHHRLLPLLEQDDKLLSVYRDIEMPLVPVLSRIERTGVLIN 551 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 LL S EI++ L LE+ +D++G++FNLSSPKQL I F ++K P KT +G Sbjct: 552 DMLLGAQSQEIAQRLDELEKKAFDIAGQEFNLSSPKQLQTIFFDQMKLPVIKKTPSGTPS 611 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L+++ D P+ ILE+R L+K+KSTY D LP IN T RVHT Y A T TG Sbjct: 612 TNEEVLQELAL-DYPLPAVILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATG 670 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L + F Sbjct: 671 RLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAF 730 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DIH AAEI G++I++V+ + RR AK +NF +IYG+S F LA QL IPR EA Y Sbjct: 731 QQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAY 790 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF R+PG+ +Y+E T++ + GYVET+FGRR+H EI S R ERAAINAP Sbjct: 791 MDTYFERYPGVMQYMEDTRSTAAEQGYVETLFGRRLHLPEITSRNGMRRKAAERAAINAP 850 Query: 892 IQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 +QG+AADI ++AM+ V +E K+L+Q+HDELVFEV E ++ + ME Sbjct: 851 MQGTAADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDELVFEVEESALSEIESKVQKLMES 910 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A L+VPL +NW E Sbjct: 911 AA----ALKVPLVAEAGHGDNWDE 930 >gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] Length = 930 Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust. Identities = 364/986 (36%), Positives = 567/986 (57%), Gaps = 79/986 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+DG + IYRA++A TP L+ +GL AI GF N L ++L+N + +H AV Sbjct: 4 LFLLDGMALIYRAYFALSKTPRLT--SNGLNTGAIMGFTNTLLEVLKNQK----PTHIAV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD A T R+ + YKA+R K+PE L +P + + F IP I G+EADDII T Sbjct: 58 VFDTDAPTNRHIEFESYKAHREKMPEDLSASIPYIFRLIEGFNIPIITKDGYEADDIIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP-EK 178 E++GF V ++ DKD QLVS +Y + E + ++ KW I + Sbjct: 118 LAKEGEQKGFTVYCMTPDKDFGQLVSDNIFIYKPARMGNGAETQGVPEILAKWEISDVSQ 177 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ + L GD++DNIPGIPGIG KTA L+Q++G++E I+ N+ ++K K +EN+ +AE Sbjct: 178 VIDILGLWGDAVDNIPGIPGIGEKTAKKLVQDFGSVEGIIANSDKLK-GKMKENVENFAE 236 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 LS++L ++ DVPI + L+LED N L LEF L RV Sbjct: 237 QGLLSKRLATIQLDVPIEFDEKSLLLEDPNKEVLEPLFAELEFRTLGKRVFGE------- 289 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 D + + G ++T+ + FS+ ++ T+ PQ+ E L + Sbjct: 290 ------DFSVADATG--------KNTSGQMDLFSTATNDTA-------PQQ---EELPPV 325 Query: 359 SQYPINNDSYTKI-VNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLD 415 + I+N ++ I V++ + QQ + K E SF T+T +DA + + + Sbjct: 326 ASNNIDNTAHEYILVDSSEAQQKLAK-ELAAQKSFCFDTETTGLDALVADIVGL------ 378 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 SF +E + + + + L EI++ K E+ KIG NIKYD L+ Sbjct: 379 -----SFAIEK---GKAYYVPTPDSREQAL--EIINIFKPILEDPAIQKIGQNIKYDILL 428 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK----SRKSSIPI 530 L RY + ++G D ML Y++D + H + +A+ +L Y I K K + Sbjct: 429 LSRYDVKVKGALFDTMLAHYLIDP-DTRHGMDVLAENYLGYIPVSITKLIGEKGKKQGNM 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 + ++E+A E++++ LQL P L L + + ++ P++ V+S++E G++I Sbjct: 488 RDVEIELIKEYASEDADITLQLKEKFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKI 547 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649 D D+L S I +++ +LE +IY+ +G KFN++SPKQLG++LF KL+ P KTKTGQ Sbjct: 548 DVDVLSVFSKTIEEDVRNLEASIYEKAGVKFNIASPKQLGEVLFDKLQLDPKAKKTKTGQ 607 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 +K T +D+ + I+++IL++RQL K+KSTY D+LP+ IN T +HT Y+ A Sbjct: 608 YK-TGEDVLLTLANKSDIVQDILDFRQLQKLKSTYVDALPSLINPNTGLIHTSYNQAVAA 666 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLY 768 TGRL+S PNLQNIPI+T+ G+++R+AFI +I SADYSQIELR++A +++ + Sbjct: 667 TGRLSSTNPNLQNIPIRTERGREVRKAFIPRSENNVILSADYSQIELRLMAELSQDANML 726 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F+ DIHR AA+++G+ +++VS RR+AK +NF IIYG S F L+ L IPR EA Sbjct: 727 EAFQKGYDIHRATAAKVYGLELDEVSSDQRRNAKAVNFGIIYGQSAFGLSQSLGIPRREA 786 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 AD I +YF ++ GI +Y+ K ++NG+VETI RR + +INS ++R ER AI Sbjct: 787 ADIIDQYFQQYSGIRDYMSKAIASAKENGFVETILKRRRYLRDINSANMTVRGFAERNAI 846 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQGSAAD+ + AM+ + + +E+ +LA KM++Q+HDELVF+VP +E+ +I + M Sbjct: 847 NAPIQGSAADMIKVAMLRIQEDIEEQQLAGKMIMQVHDELVFDVPLDEVEKFKTLIQNRM 906 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 + A I ++VP++V I NW E Sbjct: 907 KTA----IPMQVPIEVEIGQGKNWLE 928 >gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396] gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396] Length = 911 Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust. Identities = 366/986 (37%), Positives = 534/986 (54%), Gaps = 89/986 (9%) Query: 1 MQKENH---LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKES 56 M KEN + LVDGSS+++RA++ L R G P AI G +ML KL +K+ Sbjct: 1 MSKENRSAPVVLVDGSSYLFRAYHVPNLKELRNSKGQPTGAIRGVISMLRKL----QKDY 56 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116 S +FD FR+E+Y DYKANRP +PE L Q+ + +A G+P + I+G E Sbjct: 57 PESQVVAVFDAKGKNFRHEMYSDYKANRPPMPEDLACQIEPLYDIVRAMGLPLLIIEGVE 116 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + A +G I + DKD+ QLVSP L +T+ + +D E V++K+G+PP Sbjct: 117 ADDVIGTLAHEATTKGLDAVISTGDKDMAQLVSPHVTLVNTMTDTTMDREGVVEKFGVPP 176 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E +V AL GD++DNIPG+ G KTA L E+G+L ++ A +K K EN+ Sbjct: 177 ELIVDYLALIGDTVDNIPGVNKCGPKTAVKWLGEFGSLAQVIAQADEVK-GKIGENLRSS 235 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E LS++L ++TDV + LE + + L + LEF I D DA Sbjct: 236 LEQLPLSKELATIKTDVELPFTLEEVHPNPVDTEALHKWFTELEFRTWIK------DLDA 289 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 + P TE +++ +RD + T Q DQ Sbjct: 290 STSSPTA----ATEASAPPAQSD-ERDYQVVTEQ-----DQ------------------- 320 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 W++ L + SF T +++ ++ + + Sbjct: 321 --------------------FDHWIKALTDAKTFSFDTETTSLNYMEAEIVGV------- 353 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 SF VE V + D G + ++L+ LK E+ + KIG N+KYD Sbjct: 354 ----SFAVEPGKAAY-VPVAHDYMGAPEQLERDKVLAALKPLLEDPAYRKIGQNLKYDAH 408 Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 VL +G+ + G ED ML SYVL+S + HD+ ++A K L ++I + Sbjct: 409 VLANHGVQLNGIAEDTMLESYVLNSTANRHDMDTLASKHLGRETIHFEDIAGKGAKQLTF 468 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589 ++IS Q +A E++++ LQL L PKL E +L VY ++ P++ V+ +ME G Sbjct: 469 NQISLEQAGPYAAEDADITLQLHHALNPKLKKEGRLEQVYRDIELPLVPVLMRMEHRGAL 528 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 +D L+ S E+++ +L LEE Y+ +G+KFNL SPKQL +I + KL F KT GQ Sbjct: 529 VDSQRLRTHSQELAERMLELEEEAYEKAGQKFNLGSPKQLQEIFYEKLGFDIIKKTPKGQ 588 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 +TA+ + Q + + +LE+R LSK+KSTY D LP IN RT RVHT Y A Sbjct: 589 -PSTAEPVLQELAEKYELPRVLLEYRGLSKLKSTYTDKLPEMINPRTGRVHTSYQQAVAA 647 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIP++ + G++IR+AFI+P KLISADYSQIELRI+AH++ L + Sbjct: 648 TGRLSSSDPNLQNIPVRNEQGRRIRQAFIAPKGCKLISADYSQIELRIMAHLSGDEGLLK 707 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F LD+H+ AAE+F V ++VS + RR AK INF +IYG+S F LA Q+ + RSEA Sbjct: 708 AFSEGLDVHQATAAEVFNVAFDEVSSEQRRKAKAINFGLIYGMSAFGLARQIHVERSEAQ 767 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 YI +YF R+PG+ Y+ + + + GYVET+FGRR++ +I S +++ ER AIN Sbjct: 768 SYIDKYFERYPGVLNYMNRIRAEAQDTGYVETLFGRRLYLPDIRSSNRNLQQAAERTAIN 827 Query: 890 APIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 AP+QG+AADI +RAM++V LE D KM++Q+HDEL+ EV E + + + M Sbjct: 828 APMQGTAADIIKRAMLAVDAWLEGDSAPPAKMIMQVHDELILEVEESAVEAVKEKLTQIM 887 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 A +L VPL V V NNW E Sbjct: 888 SSAA----DLNVPLLVEAGVGNNWDE 909 >gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60] Length = 930 Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust. Identities = 366/983 (37%), Positives = 541/983 (55%), Gaps = 72/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL + SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLLMQYQP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLREQIAPLHQMVEAMGLPLLVVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AE G V I + DKD+ QLV+P L +T+ + + V K+G+PP ++ Sbjct: 121 LARRAELAGRHVLISTGDKDMAQLVTPNITLINTMTNTVLGPQEVCDKYGVPPSLIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD+ DNIPG+PG+G KTA LLQ G+L+ I + R+ L + + Sbjct: 181 ALMGDASDNIPGVPGVGEKTAQALLQGIGSLKTIYDDLDRVA-------TLSFRGAKTMG 233 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 KL++ + E + L++ +K V DCD I+P Sbjct: 234 AKLLLNK--------------EKADLSYLLATIK--------TDVDLAQDCDDLAIKP-- 269 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS---- 359 LD T + E R + + + + S + + +K +E+ Sbjct: 270 LDSETLHR--LFSRYEFKR--------WLTDAQEGSWLTGAKGGRKTRVEKSADAPAAPA 319 Query: 360 ---QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 + + Y I++ ++ + +L G +F TD++D + + IS D Sbjct: 320 SEVSVTLTREGYQTILDEAALEALIARLRQAGCFAFDTETDSLDVLSAN--LVGISCADA 377 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + +I L+ H D+ + + +L+ L+ E+E KIG N+KYD V+ Sbjct: 378 PG------QACYIPLA-HDYLDAP-RQLDRQYVLARLQPLLEDEGVAKIGQNLKYDIGVM 429 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 RYGI++RG D ML SYVL+S HD+ S+A + L + T +EI K + ++ Sbjct: 430 ARYGITLRGVAFDTMLESYVLNSVAGRHDMDSLAARHLDHKTITFEEIAGKGKGQLTFNQ 489 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQID 591 I Q E+A E+++V LQL L P L E H++ +D P+I V+S+ME TG+ ID Sbjct: 490 IPLEQAAEYAAEDADVTLQLHQRLWPTLEGESGPSHIFRDIDMPLIPVLSRMERTGVLID 549 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +L Q S E++ L +LE+ + +GE FNLSS KQL ILF K + P KT G Sbjct: 550 SAILGQHSQELAVRLEALEQQAHSEAGEPFNLSSTKQLQAILFEKQQLPVLKKTPGGAPS 609 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L ++ + + ILE+R L+K+KSTY D LP +N T RVHT Y A T TG Sbjct: 610 TNEEVLAELADQGYALPQVILEYRTLAKLKSTYTDKLPQMVNPLTGRVHTSYHQAVTATG 669 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP+++D G++IR+AFI+P ++++ADYSQIELRI+AH++ L F Sbjct: 670 RLSSSDPNLQNIPVRSDEGRRIRQAFIAPAGSRIVAADYSQIELRIMAHLSGDKGLLAAF 729 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIHR AAE+FG+ +E VS RR AK INF +IYG+S F LA QL I R EA Y Sbjct: 730 AAGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMSAFGLARQLNIGRGEAQRY 789 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF R+PG+ Y+E+T+ GYVET+ GRR++ EIN+ R ERAAINAP Sbjct: 790 MDLYFERYPGVLAYMERTRQLASDQGYVETLDGRRLYLPEINARNGMRRKAAERAAINAP 849 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG+AADI +RAMI+V L++ + +M++Q+HDELVFEVPE ++ + ME + Sbjct: 850 MQGTAADIIKRAMIAVDGWLQEAQPEVRMIMQVHDELVFEVPESQVEAVVCQVRALMENS 909 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 ++L VPLKV+I NW + Sbjct: 910 ----LSLAVPLKVDIGCGENWDQ 928 >gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 917 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 353/978 (36%), Positives = 542/978 (55%), Gaps = 83/978 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R +G P AI G NML +L ++ A + A +FD Sbjct: 11 LLLVDGSSYLYRAFHAMPDL-RGPEGAPTGAIYGMINMLRRLRKDYPD---AEYMACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y +YKA R +P+ L+ Q+ + A +A G P + + G EADD+IAT Sbjct: 67 AKGKTFRDDLYAEYKAQRASMPDDLVRQIEPIHEAVRAMGWPILMVDGIEADDVIATLAV 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A G I + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V L Sbjct: 127 AAVGHGINTVISTGDKDLAQLVNEHVTLVNTMSGEILDRDGVLAKFGVPPERIVDYLTLV 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ +G KTA L +YG L+ I+ +A+ IK EN+ + ++ L Sbjct: 187 GDTVDNVPGVEKVGPKTAVKWLTQYGTLDGIVAHAAEIK-GVVGENLRRALDWLPQAKVL 245 Query: 247 VMLRTDVPIT-----IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 + ++TD ++ IP E L + + +++F K F + Sbjct: 246 ITVKTDCDLSAHMTEIP-ESLTQKTEDIEAMVAFFKRNGFKSWL---------------- 288 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 R+ T KT +S + + E TP+ +E+ Sbjct: 289 --------------------RELTEKTEMPASATAPQGALFGEDTPE---VEK------- 318 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 Y + ++ +W+QK+ + T +++ ++ + I++ + Sbjct: 319 -----HYETVWTEANLDRWLQKINAAELTAIDTETTSLEPMQAQLVGISLCC-EPGVAAY 372 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 V + D+ + S+ S +L L+ + E++ K+G N+KYD + +G+ Sbjct: 373 IPVAHRYQDVPLQLSRAS---------VLEKLRSWLEDDSKPKVGQNLKYDSHIFANHGV 423 Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQ 537 ++RG D +L SYV +S RS HD+ S+A + L + T +++ S + D++ ++ Sbjct: 424 TLRGIVHDTLLQSYVFESHRS-HDMDSLALRHLNRKTMTFQDVCGKGASQLCFDQVDIAR 482 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLK 596 E+A E++++ LQL + P + + L VYE+++ P V+ ++E G+ ID LL Sbjct: 483 ATEYAAEDADITLQLHQRMFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLA 542 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 S E+ K +L +E+ Y+L+G+ FNL SPKQ+G+I F K+K P KT +G T + Sbjct: 543 TQSHELGKRMLEIEQQAYELAGQPFNLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEV 602 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 L+++ D P+ K +LE+R LSK+KSTY D LP I+ T RVHT Y+ A +TGRL+S Sbjct: 603 LQKL-AEDYPLPKLLLEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVAVTGRLSSN 661 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIPI+ G++IR AFI+PP ++SADYSQIELRI+AHI++ + + F D Sbjct: 662 DPNLQNIPIRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISEDENMLRAFAEGED 721 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IHR AAEIFGV VS + RR+AK INF +IYG+S F LA L I R+ A YI++YF Sbjct: 722 IHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIERAAAQSYIEKYF 781 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 +RF G+ Y++ T+ + GYV+T+FGRR+ EINSP R ERAAINAP+QG+A Sbjct: 782 YRFSGVKRYMDDTRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQGAERAAINAPMQGTA 841 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AMI+V LE KL TKM++Q+HDELV EVPE E+ + M Sbjct: 842 ADLIKLAMIAVQDWLEAEKLQTKMIMQVHDELVLEVPETELALVRVKLPELMRNVA---- 897 Query: 957 NLRVPLKVNIKVSNNWQE 974 L+VPL + V NW E Sbjct: 898 QLKVPLIAEVGVGKNWDE 915 >gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972] gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972] Length = 932 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 354/984 (35%), Positives = 544/984 (55%), Gaps = 72/984 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NA+ G NM+ ++ ++ + AV Sbjct: 6 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVINMVRAMM----RQFASDRMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E+YP+YKA RP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 61 VFDAKGKTFRDELYPEYKAQRPPMPDDLRCQIEPLHNVIRAMGLPLLSIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + A + G V I + DKD+ QLV L +T+ +D + VI+K+GIPPE ++ Sbjct: 121 LAHQASQAGIPVLISTGDKDMAQLVDDNVTLINTMTNVVMDRDGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L + N +I K + + + Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTALYDNLDKIADLGFRGSKTMAKKLEDNR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A LS +L ++ DV + E L+ + LI L F +N + Sbjct: 241 ANAELSYELATIKLDVALDCTPETLLKATPDRDALIELYGQLSFKSWLNEL--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS-KINSEQTPQKLFLERLQ 356 +E + E ++ Q + ++D + KI+ Q Sbjct: 292 -LEGGTGVVEAAEKSAASVAVS-------GAPQAAPMADSAAVKIDRSQ----------- 332 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 Y IV+ +W+ KL + +F TD++D + + ++ + + + Sbjct: 333 -----------YETIVDEAAFNRWLDKLRSAEVFAFDTETDSLDYMVANLVGVSFA-VAE 380 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + V ++D +D +L+ LK E+ K+G N+KYD +L Sbjct: 381 GEAAYVPVAHDYLDAPQQLDRDW---------VLAQLKPILEDAQQAKVGQNLKYDASIL 431 Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 RY I+M+G D ML SYV +S HD+ S+A +++ ++ +++ K+ + ++ Sbjct: 432 ARYDINMQGIAHDTMLASYVYNSVGGKHDMDSLALRFMQHSCISFEQVAGKGKNQLTFNQ 491 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591 I Q +A E+++V L+L L P L + KLL VY ++ P++ V+S++E TG+ I+ Sbjct: 492 IDLEQAAPYAAEDADVTLRLHHRLLPLLEQDDKLLSVYRDIEMPLVPVLSRIERTGVLIN 551 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 LL S EI++ L LE+ +D++G++FNLSSPKQL I F ++K P KT +G Sbjct: 552 DMLLGAQSQEIAQRLDELEKKAFDIAGQEFNLSSPKQLQTIFFDQMKLPVIKKTPSGTPS 611 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L+++ D P+ ILE+R L+K+KSTY D LP IN T RVHT Y A T TG Sbjct: 612 TNEEVLQELAL-DYPLPAVILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQAVTATG 670 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L + F Sbjct: 671 RLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAF 730 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DIH AAEI G++I++V+ + RR AK +NF +IYG+S F LA QL IPR EA Y Sbjct: 731 QQGKDIHAATAAEILGISIDQVTSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAY 790 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF R+PG+ +Y+E T++ + GYVET+FGRR+H EI S R ERAAINAP Sbjct: 791 MDTYFERYPGVMQYMEDTRSTAAEQGYVETLFGRRLHLPEITSRNGMRRKAAERAAINAP 850 Query: 892 IQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 +QG+AADI ++AM+ V +E K+L+Q+HDELVFEV E ++ + ME Sbjct: 851 MQGTAADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDELVFEVEESALSEIESKVQKLMES 910 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A L+VPL +NW E Sbjct: 911 AA----ALKVPLVAEAGHGDNWDE 930 >gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] Length = 930 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 361/980 (36%), Positives = 542/980 (55%), Gaps = 74/980 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAFYA LS DG P NA+ G NML +L R E+ + A +FD Sbjct: 11 LLLVDGSSYLYRAFYAMTHLSAP-DGTPTNAVYGVLNMLRRL----RAETPHDYCACVFD 65 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+ ++PDYKA RP +P+ L PQ ++ + G ++I EADD+I T Sbjct: 66 AKGKNFRHALFPDYKATRPPMPDDLRPQADMLPDLVELMGWKVLKISDVEADDVIGTLAK 125 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE V I + DKD+ QLVS L +T+K E +D V K+G+ P ++ AL Sbjct: 126 QAESADMNVIISTGDKDMAQLVSERITLVNTMKNETLDEAGVFNKFGVHPNQIRDFLALM 185 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD +DN+PG+ G KTAA L E+G+L+NI+ A K K EN+ LS +L Sbjct: 186 GDKVDNVPGVEKCGEKTAAKWLAEFGSLQNIMNKADEFK-GKIGENLRAALPQLPLSYEL 244 Query: 247 VMLRTDVPITIPLEHLILEDC--NGPR---LISFLKALEFTKLINRVATTYDCDAANIEP 301 V ++TDV + L + ++D N P+ L + L F + ++ Sbjct: 245 VTIKTDVDLFSELPN-GMDDLRRNAPKWAQLAVHFRELGFKTWLKEAENQLSSQVSD--- 300 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 D+ ++ G + ++++ P+ + + +KLS Sbjct: 301 ---DLFAADDVGT-----------------------QAAFDAQRQPEIILAPKPEKLS-- 332 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 Y ++N + + ++KL T T ++D +++ + I+++ Sbjct: 333 ------YQAVINQTQLDELLRKLSTAEQIGLDTETTSLDPMNARLVGISMA--------- 377 Query: 422 FKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 F E ++I ++ ++ TL L LK + E++ LKIG N+KYD+ V +G Sbjct: 378 FAAGEAVYIPINHTFAEQQLSWETL----LGSLKPYLESKTLLKIGQNLKYDQHVFANHG 433 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536 I ++G D ML SYVL+S H + +AQ+WL + T + + I +S Sbjct: 434 IQLQGIAGDAMLASYVLES-HLGHGLDELAQRWLGLETITYESLCGKGAKQISFADVSVE 492 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 Q E+A ++++ L++ L+ ++ E+ +YE ++ P+ V+ ME G+ ID+ L Sbjct: 493 QATEYACQDADFALRIEAHLKAQMSDEQR-KMYEEMELPVAQVLFHMERNGVLIDRAELA 551 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTA 654 Q SAE+ LL LE+ YDL+G+ FNL+SPKQL +ILFTKL P+ KT TG T Sbjct: 552 QQSAELGAELLKLEQQAYDLAGQPFNLNSPKQLQEILFTKLGIPTKGLKKTSTGSISTNE 611 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LEQ+ D P+ K IL+ R L+K+KSTY D LP IN T R+HT Y+ A +TGRLA Sbjct: 612 AVLEQLAM-DYPLPKIILQNRSLAKLKSTYTDKLPEMINPNTHRIHTNYAQAVAITGRLA 670 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S PNLQNIPI+T G+++RRAFI+P ++SADYSQIELRI+AH++ L + F+N Sbjct: 671 SNNPNLQNIPIRTSEGRRVRRAFIAPENSVIVSADYSQIELRIMAHLSGDATLIEAFKNG 730 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 D+HR AAE+FG+ E ++P+ RR+AKTINF +IYG+S + LA L I + A +IKR Sbjct: 731 EDVHRRTAAEVFGMQPENITPEQRRYAKTINFGLIYGMSSYGLAKSLGIDNASADMFIKR 790 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF R+ G+ +Y+++TK GYVET+FGRR++ +I++ + R ERAAINAP+QG Sbjct: 791 YFARYTGVADYMQRTKEQAADLGYVETLFGRRLYLPDIHAKNAQARAGAERAAINAPMQG 850 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +A+D+ +RAMI+V L L T++ +Q+HDELV EVP+ E Q I M A + Sbjct: 851 TASDLIKRAMIAVDDFLLSGSLKTRLTMQVHDELVLEVPKSEQERIVQNIPALM--ASVG 908 Query: 955 KINLRVPLKVNIKVSNNWQE 974 K L VPL + + NW + Sbjct: 909 KGVLDVPLVAEVGIGKNWDD 928 >gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 911 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 353/978 (36%), Positives = 542/978 (55%), Gaps = 83/978 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R +G P AI G NML +L ++ A + A +FD Sbjct: 5 LLLVDGSSYLYRAFHAMPDL-RGPEGAPTGAIYGMINMLRRLRKDYPD---AEYMACVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y +YKA R +P+ L+ Q+ + A +A G P + + G EADD+IAT Sbjct: 61 AKGKTFRDDLYAEYKAQRASMPDDLVRQIEPIHEAVRAMGWPILMVDGIEADDVIATLAV 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A G I + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V L Sbjct: 121 AAVGHGINTVISTGDKDLAQLVNEHVTLVNTMSGEILDRDGVLAKFGVPPERIVDYLTLV 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ +G KTA L +YG L+ I+ +A+ IK EN+ + ++ L Sbjct: 181 GDTVDNVPGVEKVGPKTAVKWLTQYGTLDGIVAHAAEIK-GVVGENLRRALDWLPQAKVL 239 Query: 247 VMLRTDVPIT-----IPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 + ++TD ++ IP E L + + +++F K F + Sbjct: 240 ITVKTDCDLSAHMTEIP-ESLTQKTEDIEAMVAFFKRNGFKSWL---------------- 282 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 R+ T KT +S + + E TP+ +E+ Sbjct: 283 --------------------RELTEKTEMPASATAPQGALFGEDTPE---VEK------- 312 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 Y + ++ +W+QK+ + T +++ ++ + I++ + Sbjct: 313 -----HYETVWTEANLDRWLQKINAAELTAIDTETTSLEPMQAQLVGISLCC-EPGVAAY 366 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 V + D+ + S+ S +L L+ + E++ K+G N+KYD + +G+ Sbjct: 367 IPVAHRYQDVPLQLSRAS---------VLEKLRSWLEDDSKPKVGQNLKYDSHIFANHGV 417 Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQ 537 ++RG D +L SYV +S RS HD+ S+A + L + T +++ S + D++ ++ Sbjct: 418 TLRGIVHDTLLQSYVFESHRS-HDMDSLALRHLNRKTMTFQDVCGKGASQLCFDQVDIAR 476 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLK 596 E+A E++++ LQL + P + + L VYE+++ P V+ ++E G+ ID LL Sbjct: 477 ATEYAAEDADITLQLHQRMFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLA 536 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 S E+ K +L +E+ Y+L+G+ FNL SPKQ+G+I F K+K P KT +G T + Sbjct: 537 TQSHELGKRMLEIEQQAYELAGQPFNLGSPKQIGEIFFEKMKLPVVKKTPSGSPSTDEEV 596 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 L+++ D P+ K +LE+R LSK+KSTY D LP I+ T RVHT Y+ A +TGRL+S Sbjct: 597 LQKL-AEDYPLPKLLLEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYAQAVAVTGRLSSN 655 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIPI+ G++IR AFI+PP ++SADYSQIELRI+AHI++ + + F D Sbjct: 656 DPNLQNIPIRNAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHISEDENMLRAFAEGED 715 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IHR AAEIFGV VS + RR+AK INF +IYG+S F LA L I R+ A YI++YF Sbjct: 716 IHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIERAAAQSYIEKYF 775 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 +RF G+ Y++ T+ + GYV+T+FGRR+ EINSP R ERAAINAP+QG+A Sbjct: 776 YRFSGVKRYMDDTRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQGAERAAINAPMQGTA 835 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AMI+V LE KL TKM++Q+HDELV EVPE E+ + M Sbjct: 836 ADLIKLAMIAVQDWLEAEKLQTKMIMQVHDELVLEVPETELALVRVKLPELMRNVA---- 891 Query: 957 NLRVPLKVNIKVSNNWQE 974 L+VPL + V NW E Sbjct: 892 QLKVPLIAEVGVGKNWDE 909 >gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] Length = 913 Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust. Identities = 355/975 (36%), Positives = 556/975 (57%), Gaps = 75/975 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R +G P AI GF NML +L K+ ++ A IFD Sbjct: 5 LLLVDGSSYLYRAYHALPDL-RNAEGEPTGAIYGFLNMLHRL----EKDYPTAYVACIFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFRN++Y +YKANR +P+ L Q + + G P + I+G EADD+I T Sbjct: 60 AKGKTFRNDLYQEYKANRSAMPDDLARQTGPIHELVKMLGWPILSIEGIEADDVIGTLVS 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 IA+++GF + + DKD+ QLV L +T+ E +D E V++K+G+PP+++V +L Sbjct: 120 IAKRKGFDTVVSTGDKDMSQLVRDCVTLVNTMNNEIMDEEGVMRKFGVPPDRIVDYLSLV 179 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPG+ +G KTA L +YG+L+ I+ NA IK +N+ E E +R+L Sbjct: 180 GDTSDNIPGVNKVGPKTAVKWLTQYGSLDAIIENAVNIK-GTVGDNLRESLEWLPQARQL 238 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + +RT DC+ L K++E T L Sbjct: 239 ITIRT--------------DCD---LSGQFKSIEET---------------------LVK 260 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK--LFLERLQKLSQYPIN 364 N+ + G+ R + + L + ++ ++T + LF E K ++ + Sbjct: 261 NSEDVSGL-------RKAYERYGFKNWLRELNARHQEKETKGQIDLFGEPGTKPEKF-VA 312 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 Y ++ + ++W+ ++ S T ++D+ ++ + I++S F Sbjct: 313 KQEYETVLTEEQFEKWLNLIDQAPLTSLDTETTSLDSMTARLVGISLSV-----KPGFAA 367 Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 +I L+ H + K +L LK + EN K+G N+KYD + Y I ++ Sbjct: 368 ---YIPLAHHPIE--VAKQLPLDHVLKKLKSWLENPAKKKVGQNLKYDSHIFANYHIHLQ 422 Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540 G D +L SYVL+S R HD+ S++++ L Y + +EI S I D+I Sbjct: 423 GIAHDTLLESYVLESHRR-HDMDSLSERLLDYKPISYEEICGKGASQIGFDQIELDCATR 481 Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++++ QL + P++ E L +YE+++ P+ V+ +ME G+ ID DLL S Sbjct: 482 YAAEDADITFQLHENMWPRIEKNEGLRFIYEKIEIPVSLVLQKMERNGVLIDPDLLLGQS 541 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 +E++ + LE+ Y ++ + FNL+SPKQL +ILF KL P KT +G T+ + LE+ Sbjct: 542 SELALKIDELEKKAYSVAEQSFNLNSPKQLAEILFDKLGLPLVKKTPSGAPSTSEEVLEK 601 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + D P+ K IL++R ++K+KSTY D LP IN T RVHT Y+ A +TGRLAS +PN Sbjct: 602 LAL-DYPLPKIILDFRGMAKLKSTYTDKLPRMINPETGRVHTNYAQAVAVTGRLASNDPN 660 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIP+KT+ G++IR AFI+P ++SADYSQIELRI+AH++ L + F D+H+ Sbjct: 661 LQNIPVKTEEGRRIREAFIAPAGCYIVSADYSQIELRIMAHLSDDPGLLKAFREGQDVHK 720 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 A+EIF + +V+P+ RR+AK INF +IYG+S F +A+ L I R++A +YI RYF R+ Sbjct: 721 ATASEIFDIAPLEVTPEQRRYAKVINFGLIYGMSAFGVASNLGISRTDAKNYIDRYFRRY 780 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 PG+ EY++ + R+ GYVET+FGRR+ EINSP R ERAAINAP+QG+AADI Sbjct: 781 PGVAEYMDAIRQTAREQGYVETVFGRRLWLPEINSPNGPRRQAAERAAINAPMQGTAADI 840 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + +MI+V+ +E+ +L +K+++Q+HDELV EVP++E+ + + M + +L+ Sbjct: 841 IKLSMIAVNDWIENEQLESKLIMQVHDELVLEVPDKELERVRKRLPELMGQVA----SLK 896 Query: 960 VPLKVNIKVSNNWQE 974 VPL ++ NW+E Sbjct: 897 VPLIADVGFGKNWEE 911 >gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619] gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619] Length = 915 Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust. Identities = 355/988 (35%), Positives = 537/988 (54%), Gaps = 100/988 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G+P A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ ++ +YKANRP +P+ L Q+ + + +A G P + ++G EADD+I T Sbjct: 61 AKGGTFRDAMFAEYKANRPSMPDDLRVQVEPLHASVKALGYPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + +G V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAKGRPVIISTGDKDMAQLVDGHVTLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA LL Y NL+ + A R K + E+ + Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIR-GAKTLPAKLEEHRD 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ I ++ L+ + + L++ +EF I Sbjct: 240 AAFLSYELATIKVDVPLDIEVDALVCGEPDREALLALYTEMEFKSWI------------- 286 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 ++ RD + + L +K+ + Sbjct: 287 -------------------ADVQRDAARAGDEVAPLEAPAAKVEPK-------------- 313 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 Y I++ W++KL +F T ++DA ++ + + Sbjct: 314 ---------YETILDQARFDAWLEKLRQAPLFAFDTETTSLDAQKAQLVGL--------- 355 Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNT-LTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF VE ++ L+ D G L +E +L LK ++ K+G N KYD Sbjct: 356 --SFAVEPHEAAYVPLA----HDYEGAPVQLDREAVLLALKPLLQDPAKEKVGQNAKYDI 409 Query: 474 LVLHRY--GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSS 527 +L I M+G D ML SYVL+S + HD+ S+AQK+L + ++I Sbjct: 410 NILANGSPAIQMQGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHATIAFEDIAGKGAKQ 469 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEIT 586 + ++I + +A E++++ L+L L+ +L +L V ++ P++ V++++E Sbjct: 470 LTFNQIHLDKAGPYAAEDADITLRLHQALQARLAQTPSVLPVLMDIEMPLVPVLAKIERQ 529 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G +D LL+ S E+ + LE Y+L+GE+FNL SPKQLG IL+ KL P +KT Sbjct: 530 GALVDAALLQIQSGELGVKMADLERRAYELAGEEFNLGSPKQLGSILYDKLGMPVLSKTA 589 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 GQ T L+++ P+ + ++++R LSK+KSTY D LP IN RT R+HT Y A Sbjct: 590 KGQPSTAEAVLDELAEQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQA 649 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 TGRL+S +PNLQNIPI+T G++IR+AFI+ P KL++ADYSQIELRI+AH+AK Sbjct: 650 VAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEG 709 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L F N+LD+HR AAE+FGV +E V+ RR AK INF +IYG+S F LA Q+ + R Sbjct: 710 LLHAFRNNLDVHRATAAEVFGVALEAVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRK 769 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 ++ DYI RYF R+PG+ Y+E+T+ + G+VET+FGRR++ +IN+ ++R ER Sbjct: 770 QSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERT 829 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAP+QG+AADI +RAM++V L + L +++LQ+HDELV EV E+ + I Sbjct: 830 AINAPMQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVDQVKDEIRG 889 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 M KA L VPL V + V +NW E Sbjct: 890 QMSKAA----QLDVPLLVEVGVGSNWDE 913 >gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] Length = 920 Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust. Identities = 349/979 (35%), Positives = 546/979 (55%), Gaps = 66/979 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 MQK L LVDGSS++YRAF+A P + R +G P A+ G NML +L R + AS+ Sbjct: 1 MQKT--LLLVDGSSYLYRAFHALPDM-RNAEGAPTGALYGIINMLRRL----RNDYPASY 53 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A +FD TFR+++YPDYKA R +PE L Q+ + A +A G P + ++G EADD+ Sbjct: 54 VACVFDAKGKTFRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDV 113 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T + A G + + DKD+ QLV+ L +T+ E +DI V K+G+PPE++V Sbjct: 114 IGTLSVQATAAGLDTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIV 173 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +L GD++DN+PG+ G KTA L YG L+ ++ NA +I EN+ + Sbjct: 174 DYLSLIGDTVDNVPGVEKCGPKTAVKWLTAYGTLDGVMANADKIS-GVVGENLRRALDWL 232 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 R LV ++TD ++ + ++ P+ LK L FT+ R D A Sbjct: 233 PQGRVLVTVKTDCDLSAHMSSILESLTMQPQDKDVLKEL-FTRYNFRTWLRELSDGA--- 288 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + ++ + + + F++ K+ E Sbjct: 289 ----EAGASKAPMVGASAAAALEAPAQGGLFAA----APKVEYE---------------- 324 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 ++ + QW+ + + T +++A ++ + I++ + Sbjct: 325 ---------TVLTDAQLDQWIATINAAELTAVDTETTSLEAMQAELVGISLCCEPGR--- 372 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 +I ++ H QD+ + + + +L LK + E+ K+G ++KYD + YG Sbjct: 373 -----AAYIPVA-HNYQDAPVQLS-RQHVLEKLKPWLEDASKPKLGQHLKYDSHIFANYG 425 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536 + + G + D +L SYV +S R HD+ S+A + L + T E+ S I ++++ Sbjct: 426 VRLAGVKHDTLLESYVFESHR-PHDMDSLAARHLERKTITYAEVCGKGASQIGFNEVAIE 484 Query: 537 QVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + E+A E++ V L L + P++ +KL +YE+++ P V+ ++E G+ ID + L Sbjct: 485 RATEYAAEDAEVTLALHQAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLIDSERL 544 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 Q S ++ K +L +E+ YDL+G+ FNL+SPKQLG+ILF KL+ P KT +G T + Sbjct: 545 GQQSHDLGKRMLEIEQQAYDLAGQPFNLNSPKQLGEILFGKLELPVVKKTASGAPSTDEE 604 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 L+++ D P+ K +L++R L+K+KSTY D LP +N T RVHT Y+ A +TGRL+S Sbjct: 605 VLQKL-AEDYPLPKVLLDYRGLAKLKSTYTDKLPKMVNPATGRVHTNYAQAVAVTGRLSS 663 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIPI+T G++IR AF++P ++SADYSQIELRI+AHI++ + + F N+ Sbjct: 664 NDPNLQNIPIRTAEGRRIREAFVAPEGSVIVSADYSQIELRIMAHISEDENMLKAFANNE 723 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR AAEIFG+ E+V + RR+AK INF +IYG+S F LA+ L I R+ A YI +Y Sbjct: 724 DIHRATAAEIFGIAPEQVESEQRRYAKVINFGLIYGMSAFGLASNLGIERAAAQMYIDKY 783 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F RF G+ Y+++T+ + GYVET+FGRR+ EINSP R ERAAINAP+QG+ Sbjct: 784 FMRFSGVKRYMDETRLQAKARGYVETVFGRRLWLPEINSPNGPRRQGAERAAINAPMQGT 843 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD+ + AMI+V LE + L T+M++Q+HDELV EVP++E+ + + M+ Sbjct: 844 AADLIKMAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELEMVREKLPELMKNVA--- 900 Query: 956 INLRVPLKVNIKVSNNWQE 974 L+VPL + + NW E Sbjct: 901 -ELKVPLLAEVGIGKNWDE 918 >gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B] gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B] Length = 928 Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust. Identities = 361/983 (36%), Positives = 540/983 (54%), Gaps = 74/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRAF+A P + + +P NA+ G NML +++ E IA V Sbjct: 6 ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASERIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++Y +YKANRP +P+ L Q+ + +A G+P I + G EADD+I T Sbjct: 61 VFDAKGKTFRDDMYAEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A ++G V I + DKD+ QLV L +T+ +D E V++K+GIPPE ++ Sbjct: 121 LAYQASQKGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAGLGFRGSKTMAKKLIDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++ DV + E L+ + N L+ L F +N + + + Sbjct: 241 ENAMLSYELATIKLDVELEETPESLLKAEPNKDELVKLYGQLTFKSWLNEL---LEGGSG 297 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++E V L + S +TS + Sbjct: 298 SVEAVEL-------------------AGSSQASSSQAEMETSAVT--------------- 323 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I++ + W+ KL+T +F TD +D + + ++ + +D+ Sbjct: 324 -----IDRSQYETILDKETFNAWLDKLQTAELFAFDTETDNLDYMLANLVGLSFA-VDEG 377 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D +D +L LK E+ K+G N+KYD VL Sbjct: 378 IAAYVPVAHDYLDAPEQLDRDW---------VLEQLKPILEDAAKAKVGQNLKYDASVLA 428 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 RY I ++G + D ML SY+ +S HD+ S+A ++L ++ ++I K+ + ++I Sbjct: 429 RYDIELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQI 488 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q +A E+++V L+L L + E L VYE ++ P++ V+S++E TG+ ID+ Sbjct: 489 ELEQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLSRIERTGVFIDE 548 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L S EI+ L LE+ Y+++ ++FN++SPKQL ILF K+ P KT +G T Sbjct: 549 MKLSAQSVEITARLDELEKKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPST 608 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TGR Sbjct: 609 NEEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGR 667 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L F Sbjct: 668 LSSTDPNLQNIPIRNEAGRRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFR 727 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH AAEI GV+IE VS + RR AK +NF +IYG+S F LA QL IPR EA Y+ Sbjct: 728 DGKDIHAATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYM 787 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ +Y+E T++ GYVETIFGRR+H EI S R ERAAINAP+ Sbjct: 788 DTYFERYPGVMQYMEDTRSTAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPM 847 Query: 893 QGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI ++AM+ V + + E+ K+L+Q+HDELVFEV E ++ + ME A Sbjct: 848 QGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESA 907 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L+VPL +NW + Sbjct: 908 A----ELKVPLVAEAGHGDNWDQ 926 >gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1] Length = 915 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 355/987 (35%), Positives = 533/987 (54%), Gaps = 98/987 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G+P A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ ++ +YKANRP +P+ L Q+ + + +A G P + ++G EADD+I T Sbjct: 61 AKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + G V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA LL Y NL+ + A R K + E+ + Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPTLAIR-GAKTLPAKLEEHRD 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ + +E L+ + + L++ +EF + Sbjct: 240 AAFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWV------------- 286 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E+ RD + + +K+ + Sbjct: 287 -------------------AEVQRDAAKAGDDVAPAVEPAAKVEPK-------------- 313 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 Y I++ W++KL +F T +DA ++ + + Sbjct: 314 ---------YETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQLVGL--------- 355 Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474 SF VE ++ L+ H + + + L +E +L LK E+ K+G N KYD Sbjct: 356 --SFAVEPHEAAYVPLA-HDYEGAPAQ--LDREAVLLALKPLLEDPAKAKVGQNAKYDIN 410 Query: 475 VLHRY--GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 +L I MRG D ML SYVL+S + HD+ S+AQK+L +T ++I + Sbjct: 411 ILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQL 470 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITG 587 ++I+ + +A E++++ L+L L+ +L + V ++ P++ V++++E G Sbjct: 471 TFNQINLDKAGPYAAEDADITLRLHDALQARLAQTPSVQPVLMDIEMPLVPVLARIERQG 530 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 +D +LLK S E+ + LE Y+L+GE FNL SPKQLG IL+ KL P +KT Sbjct: 531 ALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPVLSKTAK 590 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQ T L+++ P+ + ++++R LSK+KSTY D LP IN RT R+HT Y A Sbjct: 591 GQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAV 650 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 TGRL+S +PNLQNIPI+T G++IR+AFI+ P KL++ADYSQIELRI+AH+AK L Sbjct: 651 AATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F N LD+HR AAE+FGV +E V+ RR AK INF +IYG+S F LA Q+ + R + Sbjct: 711 LHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQ 770 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 + DYI RYF R+PG+ Y+E+T+ + G+VET+FGRR++ +IN+ ++R ER A Sbjct: 771 SQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTA 830 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AADI +RAM+ V L + L +++LQ+HDELV EV E+ + I Sbjct: 831 INAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQH 890 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M +A L VPL V V NW E Sbjct: 891 MSQAA----QLDVPLLVEAGVGANWDE 913 >gi|313111566|ref|ZP_07797365.1| DNA polymerase I [Pseudomonas aeruginosa 39016] gi|310883867|gb|EFQ42461.1| DNA polymerase I [Pseudomonas aeruginosa 39016] Length = 913 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 356/986 (36%), Positives = 539/986 (54%), Gaps = 98/986 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G P A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLT-TSTGKPTGAVKGVLNMLLSL----RKQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ +YKANRP +P+ L Q+ + + +A G+P + ++G EADD+I T Sbjct: 61 AKGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ ++D++ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSRLDVDGVKEKFGVGPELIIDFLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENIL---INASRIKQKKRRENILE 235 GD +DNIPG+PG+G KTA LL Y +L+ + I ++ K EN Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLEEN--- 237 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E A LS +L ++TDV + + ++ L + LI+ + LEF ++ + Sbjct: 238 -REQAFLSYQLATIKTDVELDVEIDKLYPGEPQREALIALYRELEFKNWLDDLLREAKEA 296 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 N E I+ E+D D + + F + Sbjct: 297 GENGEAET-----------PIQAEVDYDVVLDQAGFDA---------------------- 323 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 W++KLE +F T ++DA ++ + ++ + + Sbjct: 324 ------------------------WLKKLEEAELIAFDTETTSIDAQQAQVVGVSFA-VK 358 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + + ++ + +D+ +L LK E+ LK+G + KYD V Sbjct: 359 EGEAAYVPLAHSYMGVPEQLDRDA---------VLRALKPLLEDPKKLKVGQHAKYDINV 409 Query: 476 LHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 L I++RG D ML SYVLDS + HD+ S+A K+L ++ ++I + Sbjct: 410 LANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLT 469 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588 D+I+ Q +A E+++V L+L L KL + L V ++ P++ V++++E G Sbjct: 470 FDQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGA 529 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D +LL S E+ + +++LE YDL+G++FNL SPKQLG IL+ KL P +KT TG Sbjct: 530 LVDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPVLSKTATG 589 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q T L ++ D + K I+++R +SK+KSTY D LP IN RT R+HT Y A Sbjct: 590 QPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINLRTGRIHTSYHQAVA 649 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+AK L Sbjct: 650 ATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLL 709 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F + LD+HR AAE+FGV +E V+ RR AK INF +IYG+S F LA Q+ + R EA Sbjct: 710 DAFRHDLDVHRATAAEVFGVPLEDVNGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEA 769 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI RYF R+PG+ Y+E+T+ + G+VET+FGRR++ EI+S ++R ER AI Sbjct: 770 QAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAI 829 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+AADI +RAM++V L++ L +++LQ+HDELV EV E+ + + I M Sbjct: 830 NAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREDLVEQVCEGIRPLM 889 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V V +NW E Sbjct: 890 SGAA----TLDVPLVVEAGVGSNWDE 911 >gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] Length = 944 Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust. Identities = 362/987 (36%), Positives = 568/987 (57%), Gaps = 64/987 (6%) Query: 3 KENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 ++ LFL+D + I+R +YA P L+ K GL +AI GF N L +L++ + + Sbjct: 5 QDKRLFLIDAYAMIFRGYYALIRNPRLTSK--GLDTSAIFGFTNSLIELIRREK----PT 58 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD + R + + DYKANR + PE + +P + +A IP + ++G+EADD Sbjct: 59 HLAVVFDVGQASVRTDDFSDYKANRSETPEAIKIAVPYIHRILEAMHIPILGVEGYEADD 118 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKIDI---EHVIKKWGIP 175 +I T AEKEG+ +++ DKD QLV+ +Y +K I+I E V K+ I Sbjct: 119 VIGTIACKAEKEGYTTYMVTPDKDFAQLVTDKIKIYKPGLKGGDIEILGVEEVKAKYEIE 178 Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 P++++ A+ GD++DNIPG+ G+G KTA L+E+G +EN+L N ++K K +E + Sbjct: 179 DPKQVIDFLAMMGDAVDNIPGLEGVGEKTAMKFLKEFGTIENLLANTDKLK-GKLKEKVE 237 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 AE LS+KL + D P+ E LE + ++ +EF +L + + Sbjct: 238 ASAERGILSKKLATIICDAPVEFHQEQYDLETPDFEKVKEVFDEIEFRRLYENLYRAFA- 296 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 A E +V ++ E K TE+ + ++ F++ + +++ T +E Sbjct: 297 -PAPAETIV--VSEVEVKQTPAGTEV-KGQVMQLDLFANFEELEQATSTKST-----IEH 347 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 L Q+ INN K + +QQ V F T +++ ++ + ++ S Sbjct: 348 NDHLYQF-INNPKAQKKLVDNLLQQKV--------VCFDTETTSLNELEAELVGMSFSY- 397 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 K ++ +I LS ++ + L + FFE E LK+ HN+K+D Sbjct: 398 --KKGLAY-----YIPLSEDRAE--------VLQTLEIFRPFFEKEDLLKVAHNLKFDYK 442 Query: 475 VLHRYGISMRG-FEDIMLMSYVLD-SGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 VL +Y I+++G D M+ Y+L+ GR H + +++ +L+Y + + I+ + Sbjct: 443 VLKQYDITVKGAMFDTMIAHYLLNPDGR--HGMDYLSEVYLNYKPVSIETIIGKKGKKQG 500 Query: 530 IDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + +D + Q ++A E+++V QL+ L P+L E L ++ ++ P+++V+++ME++GI Sbjct: 501 NFRDADLRTQTDYAAEDADVTFQLYELFAPQLKKENLEELFYNIEMPLMEVLAKMELSGI 560 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT 647 +D+ L Q S ++ +L LE I++LSGE+FN++SP+QLG+ILF K++ P KTKT Sbjct: 561 SLDEKWLAQESVDLENDLKGLEAKIFELSGEEFNMNSPRQLGEILFEKMQLDPKAKKTKT 620 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQ+ T++D+ Q + IIK+ILE+R K+KSTY D+LP+ I+K RVHT +S + Sbjct: 621 GQY-ATSEDVLQKLSSKHEIIKHILEYRTYQKLKSTYVDALPSQIDKDDNRVHTNFSQTT 679 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 TGRLAS+ PNLQNIPI+T GQ+IR AF+S KK+ISADYSQIELR++A I+ + Sbjct: 680 AATGRLASVNPNLQNIPIRTLRGQQIRGAFVSGEGKKIISADYSQIELRLIAEISGEENM 739 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F++ DIH AA++F + + +VS R AKT+NF IIYG F LA Q + R+E Sbjct: 740 IKAFQDGEDIHASTAAKLFKIPLAEVSKTQRSQAKTVNFGIIYGQGAFALAEQTGLSRTE 799 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A I+ YF +P + EY+ + N RQ GYVETI GR+ H +INS +R ER A Sbjct: 800 AKQMIEAYFETYPKLKEYMAEQVNKARQLGYVETILGRKRHLKDINSNNFVVRGHAERNA 859 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +NAP+QGSAADI + AMI + + LE+ +L TKMLLQ+HDELVFE P +EI +AS +I Sbjct: 860 VNAPVQGSAADIVKIAMIKIDRELEEQQLKTKMLLQVHDELVFEAPADEIESASHLIRTE 919 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A + +VPL V I V +NW E Sbjct: 920 MENA----LKTQVPLLVEIGVGDNWLE 942 >gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12] gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 923 Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust. Identities = 353/980 (36%), Positives = 535/980 (54%), Gaps = 70/980 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P LS G P A+ G NML L+ + A + D Sbjct: 4 LVLIDGSSYLYRAFHALPPLSNAA-GEPTGALFGVVNMLRTTLKER-----PDYAAFVID 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+ + +YK +RP +P+ L Q+ + A GI + I G EADD+I T Sbjct: 58 APGKTFRDALDSEYKMHRPPMPDDLRMQVEPMCGIVHALGIDILCIHGVEADDVIGTLAL 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQAL 185 A +G AVTI + DKD QLV P L +T+ ++D VI K+G+ P++++ AL Sbjct: 118 AAVADGIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLAL 177 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS+DN+PG+ G KTAA L EYG+L+ ++ NA +IK K +N+ L+R Sbjct: 178 MGDSVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKGKIG-DNLRVVLPRLLLNRA 236 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 L+ ++TDV + + L L + + L F + FT+ + + D ++ V + Sbjct: 237 LITIKTDVVLEKRPQDLALRERDTEALRDFYQRYGFTQALK------ELDGGSVAVTVAE 290 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 + D ++ + S + Sbjct: 291 QEPGRGRDAGFHVAPDASVAMEINPALSAPGE---------------------------- 322 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 Y I + +Q W+ +L G + TD++D + I + SF E Sbjct: 323 --YETIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGL-----------SFASE 369 Query: 426 TIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 + + D G L+ L+ E+ K+G + KYD VL RYGI + Sbjct: 370 -VGCAAYLPFGHDYPGAPVQLDRGQALALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVL 428 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY-TRK--EILKSRKSSIPIDKISDSQVQ 539 G+ +D +L S+VL SG + HD+ ++A++ L Y T K +++ IP + + Sbjct: 429 AGYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPFSHVGVQEAT 488 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++A E++++ L+L +L PKL+ E +L VY ++ P++ V+ ++E G+QID + L + Sbjct: 489 QYAAEDADITLRLHCVLAPKLLAEPILERVYREIEMPLVAVLERIEANGVQIDAEELYKQ 548 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 SA++S+ ++ ++ DL+G FNL SPKQL +LF +LK P KT GQ T + LE Sbjct: 549 SADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALE 608 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 I + + + ILE+R L+K+++TY + LP I+ T RVHT Y A TGRL+S +P Sbjct: 609 AI-VDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATGRLSSSDP 667 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+TD G++IRRAF++P +KLI+ DYSQIELRI+AH++ L FE+ +D+H Sbjct: 668 NLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVH 727 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 +AAE+FG I++V+P RR AK INF +IYG+S F LA QL I R EA DYI YF R Sbjct: 728 CAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDR 787 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 F G+ +++E T+ R GYVET+FGRR++ + I S + R ERAAINAP+QG+AAD Sbjct: 788 FSGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAAD 847 Query: 899 ITRRAMISVHK--SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 I +RAM++V + H+ M+LQ+HDELVFE E + T +VH + Sbjct: 848 IIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPT----LVHEVSARMAAAA 903 Query: 957 NLRVPLKVNIKVSNNWQEEN 976 LRVPL V++ V ++W E + Sbjct: 904 QLRVPLVVDVGVGHHWDEAH 923 >gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] Length = 930 Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust. Identities = 369/986 (37%), Positives = 567/986 (57%), Gaps = 79/986 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+DG + IYRA++A TP L+ +GL AI GF N L ++L+N + +H AV Sbjct: 4 LFLLDGMALIYRAYFALSKTPRLT--SNGLNTGAIMGFTNTLLEVLKNQK----PTHIAV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD A T R+ + YKA+R K+PE L +P + + F IP I G+EADDII T Sbjct: 58 VFDIDAPTNRHIEFESYKAHREKMPEDLSASIPYIFRLIEGFNIPIITKDGYEADDIIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP-EK 178 E++GF V ++ DKD QLVS +Y + E + ++ KW I + Sbjct: 118 LAKEGEQKGFTVYCMTPDKDFGQLVSDNIFIYKPARMGNGAETQGVPEILAKWEISDVSQ 177 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ + L GD++DNIPGIPGIG KTA L+Q++G++E I+ N+ ++K K +EN+ +AE Sbjct: 178 VIDILGLWGDAVDNIPGIPGIGEKTAKKLVQDFGSVEGIIANSDKLK-GKMKENVETFAE 236 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 LS++L ++ DVPI + L+LED N L LEF L RV Sbjct: 237 QGLLSKRLATIQLDVPIEFDEKSLLLEDPNKEVLEPLFAELEFRTLGKRV---------- 286 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E+ +A DTT K S S D S ++ TPQ+ E + + Sbjct: 287 ---------FGEDFSVA-------DTTGKNS--SGQMDLFSTTVNDLTPQQ---EEIPPV 325 Query: 359 SQYPINNDSYTKI-VNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLD 415 + I+N ++ I V++ + QQ + K E G SF T+T +DA + + ++ + Sbjct: 326 ASNNIDNTAHEYILVDSSEAQQKLAK-ELAGQKSFCFDTETTGLDALVADIVGLSFAFEK 384 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 K ++ V T DS + EI++ K E+ + K+G NIKYD L+ Sbjct: 385 GK---AYYVPT----------PDSREQ---ALEIVNIFKPVLEDANIEKVGQNIKYDILL 428 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK----SRKSSIPI 530 L RY + ++G D ML Y++D + H + +A+ +L Y I K K + Sbjct: 429 LSRYDVKVKGTLFDTMLAHYLIDP-DTRHGMDVLAENYLGYIPVSITKLIGEKGKKQGNM 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 + ++E+A E++++ LQL P L L + + ++ P++ V+S++E G++I Sbjct: 488 RDVEIELIKEYASEDADITLQLKEKFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKI 547 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649 D D+L S I +++ +LE +IY+ +G KFN++SPKQLG++LF KL+ P KTKTGQ Sbjct: 548 DVDVLSVFSKTIEEDVRNLEASIYEKAGVKFNIASPKQLGEVLFDKLQLDPKAKKTKTGQ 607 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 +KT +D+ + I+++IL++RQL K+KSTY D+LP IN T +HT Y+ A Sbjct: 608 YKT-GEDVLLTLANKSDIVQDILDFRQLQKLKSTYVDALPGLINPTTGLIHTSYNQAVAA 666 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLY 768 TGRL+S PNLQNIPI+T+ G+++R+AFI +I SADYSQIELR++A +++ + Sbjct: 667 TGRLSSTNPNLQNIPIRTERGREVRKAFIPRSENNVILSADYSQIELRLMAELSQDANML 726 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F+ DIHR AA+++G+ +++VS RR+AK +NF IIYG S F L+ L IPR EA Sbjct: 727 EAFQKGYDIHRATAAKVYGLELDEVSSDQRRNAKAVNFGIIYGQSAFGLSQSLGIPRREA 786 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 AD I +YF ++ GI +Y+ K ++NG+VETI RR + +INS ++R ER AI Sbjct: 787 ADIIDQYFQQYSGIRDYMAKAIASAKENGFVETILKRRRYLRDINSANMTVRGFAERNAI 846 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQGSAAD+ + AM+ + + +E +L+ KM++Q+HDELVF+VP +E+ +I + M Sbjct: 847 NAPIQGSAADMIKVAMLRIQEDIEQQQLSGKMIMQVHDELVFDVPLDEVEKFKTLIQNRM 906 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 + A I L+VP++V I NW E Sbjct: 907 KTA----IPLQVPIEVEIGQGKNWLE 928 >gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis] Length = 931 Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust. Identities = 360/986 (36%), Positives = 537/986 (54%), Gaps = 73/986 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M ++ L LVDGSS++YRAF+A P L R G P ++ G + +LQ +K+ +A + Sbjct: 1 MTQDKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPSSSPTGAIRGMVNMLQALKKDVVADY 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 +FD TFR+ IYP+YKA+RP +PE L Q+ + + G + I G EADD+ Sbjct: 60 AVCVFDASGPTFRDVIYPEYKAHRPAMPEELRAQIEPIHEVVRLLGWAVLAIPGVEADDV 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T ++A ++G V + S DKDL QLV+ + DT+ +K D+ V+ ++G+PP MV Sbjct: 120 IGTLAHVAAQQGVQVVVSSGDKDLSQLVNERITIIDTMNGKKRDVAGVMAEFGVPPALMV 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 QAL GD++DN+PG+P +G KTAA L EYG+L+ ++ A IK EN+ Sbjct: 180 DFQALVGDAVDNVPGVPKVGPKTAAKWLSEYGSLDTLMARAGEIK-GVVGENLRATLGWL 238 Query: 241 RLSRKLVMLRTDVPIT-----IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 R+LV ++TD ++ +P L+ + + L F + F L + Sbjct: 239 PTGRQLVTIQTDCDLSAHVAGLPALDSIAVGAQQTDALAGFYEKYGFKSLARALQQASPA 298 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 A P G + + D TS + + Q S + Sbjct: 299 PPATALP-----------GQSGDLFGDLFGDHNTSPVAEAAQQRSVV------------- 334 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 Y ++N D QW+ +L + T +DA ++ + ++ S Sbjct: 335 -------------YDTLLNWADFDQWLPRLLQADLVALDTETSALDAMRAQIVGLSFSVQ 381 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 E +I L H D+ + L +++L+ LK + E+ K+G +IKYD+ Sbjct: 382 PG--------EAAYIPLR-HEGPDAPVQLPL-EQVLARLKPWLEDARHAKLGQHIKYDRH 431 Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 V +GI +RG+ D ML SYVL+ H++AS+A++ T +++ IP Sbjct: 432 VFANHGIEVRGYVHDTMLQSYVLEV-HKPHNLASLAERHTGRTGLNYEDLCGKGVHQIPF 490 Query: 531 DKISDSQVQEHAIENSNVILQ----LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 ++S + +A E+S+ L+ LW LL+ E+L +YE L+ + + +ME Sbjct: 491 AQVSVDKAATYACEDSDQTLEVHQTLWPLLQAN---ERLRAIYE-LEMHSSEALFRMERN 546 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G+ ID LL Q S + + +L LE Y+++G+ FNL+SPKQLG+I F KL P KT Sbjct: 547 GVLIDAALLAQQSHALGQRILRLETEAYEIAGQPFNLNSPKQLGEIFFDKLGMPVVRKTT 606 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 TG T + LE++ D P+ +LE R LSK+KSTY D L RT RVHT Y+ A Sbjct: 607 TGARSTNEEVLEKL-AADYPLPARLLEHRSLSKLKSTYTDKLGLLALPRTGRVHTHYAQA 665 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 +TGRL+S +PNLQNIP++T G++IR AF++PP + + SADYSQIELRI+AHI+ Sbjct: 666 VAVTGRLSSSDPNLQNIPVRTPEGRRIREAFVAPPGRVIASADYSQIELRIMAHISGDPS 725 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L F + LD+HR AAE+FGV + +VS + RR+AK INF +IYG+S F LA L + R Sbjct: 726 LLHAFHHGLDVHRATAAEVFGVPVSEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGLDRQ 785 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 A +YI+RYF R+PG+ +Y+E+TK + GYVET+FGRR+ EINSP R ERA Sbjct: 786 AAKNYIQRYFERYPGVRQYMEETKARAKSLGYVETVFGRRLMLPEINSPNGPRRAAAERA 845 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAP+QG+AAD+ ++AM++V L+ K M++Q+HDELVFE+PE + + Sbjct: 846 AINAPMQGTAADLIKKAMVAVQARLDAEKPEILMIMQVHDELVFELPENAVDWLRAEVPR 905 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972 M LRVPL + V NW Sbjct: 906 LMAGVA----ALRVPLLAEVGVGGNW 927 >gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] Length = 906 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 349/956 (36%), Positives = 538/956 (56%), Gaps = 71/956 (7%) Query: 33 LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92 +P NAI G NM+ ++ ++ + AVIFD TFR+E+Y YKA+RP +P+ L Sbjct: 6 IPTNAIYGVVNMIRSMM----RQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELR 61 Query: 93 PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152 Q+ + +A G+P + I+G EADD+I T A + G V I + DKD+ QLV Sbjct: 62 CQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNI 121 Query: 153 CLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG 212 L +T+ +D + VI+K+GIPPE ++ AL GD +DNIPG+PG+G KTA LLQ G Sbjct: 122 TLINTMTNVVLDRQGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIG 181 Query: 213 NLENILINASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266 LE + N +I K + + + + A+LS +L ++ DV + + L+ + Sbjct: 182 GLEALYANLDKIAALGFRGSKTMAQKLEDNRDNAKLSYQLATIKCDVELEESPQTLLKQT 241 Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326 + L+S L F + + LD T G+ + D Sbjct: 242 PDRDALMSLYGKLAFKSWLTEL---------------LDGGT----GV-----VTADEQT 277 Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLET 386 KTS S++ T+ ++ P+ I+ Y I+N +D Q W++KL+ Sbjct: 278 KTS---SVTVSTAASHAAAIPES---------PAAHIDRSQYQTILNEQDFQLWLEKLKQ 325 Query: 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446 +F TD +D + + ++ + + + + V ++D +D Sbjct: 326 AELFAFDTETDNLDYMVANLVGMSFA-VAEGEAAYLPVAHDYLDAPQQLERDW------- 377 Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505 +++ LK E+E K+G N+KYD V+ RYG+ +RG D ML SYV +S HD+ Sbjct: 378 --VIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDM 435 Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+A ++L ++ +++ K+ + ++I+ + ++A E+++V L+L + P ++ Sbjct: 436 DSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHP--LI 493 Query: 563 E---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 E KL VY ++ P++ V+S++E TG+ ID LL S EI+ L LE+ Y+L+G+ Sbjct: 494 EQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAYELAGK 553 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 FN+SSPKQL ILF ++K P KT +G T + L+++ D P+ K ++E+R L+K Sbjct: 554 PFNVSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAK 612 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 +KSTY D LP IN T RVHT Y A T TGRL+S +PNLQNIP++ + G++IR+AF++ Sbjct: 613 LKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVA 672 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 P K+++ DYSQIELRI+AH++ L F + DIH AAEI GV I++VS + RR Sbjct: 673 PHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRR 732 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++ Q GYV Sbjct: 733 RAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYV 792 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLAT 918 ETIFGRR+H EI S + R ERAAINAP+QG+AADI ++AM+ V + +E + Sbjct: 793 ETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRV 852 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 K+L+Q+HDELVFEV E ++ + ME A L VPL +NW + Sbjct: 853 KLLMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWDQ 904 >gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000] gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000] Length = 946 Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust. Identities = 349/993 (35%), Positives = 552/993 (55%), Gaps = 73/993 (7%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + + L LVDGSS++YRA++A P L R +G P AI G NML KL R + A + Sbjct: 5 ESQETLLLVDGSSYLYRAYHALPDL-RNGEGFPTGAIYGIVNMLRKL----RNDYPAKYS 59 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 A +FD TFR+E+YP YK +R +P+ L Q+ + A +A G P + + G EADD+I Sbjct: 60 ACVFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILMVDGVEADDVI 119 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T A +EG + + DKDL QLV+ L +T+ E +D V+ K+G+PP K+V Sbjct: 120 GTLAERAAREGIRTVVSTGDKDLAQLVNDHVTLVNTMSNETLDPAGVLAKFGVPPGKIVD 179 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +L GD++DN+PG+P +G KTA L EYG+L++++ A IK EN+ + Sbjct: 180 YLSLIGDTVDNVPGVPKVGPKTAVKWLGEYGSLDSVIARAGEIKGVVG-ENLRNTLDWLP 238 Query: 242 LSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 R+L+ ++TD + +P E L+ + +L+ F F + + Sbjct: 239 KGRELLTVKTDCDLATEVPTFEALVDGGEDRAKLVDFFGRYGFKTWLREASGE------- 291 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 + T + G A R Q++ + + LF Sbjct: 292 ------SLPDTRSVGAA------RKAATPVKQYAPEAAAQPQAG-------LFD------ 326 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 + P Y + ++ W++ L+ T ++D ++ + +++S Sbjct: 327 VEAPPAEVKYETVTTEAQLESWMRLLDASELVCIDTETTSIDPMLAQLVGLSLSVEPG-- 384 Query: 419 DTSFKVETIFIDLSVHTSQDSTG---KNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474 + +I ++ H D +G L++E +L+ +K + E+ K+G ++KYD Sbjct: 385 ------QACYIPVA-HRGPDVSGLDAAGQLSREAVLARMKPWLEDAARKKVGQHLKYDAH 437 Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPI 530 V +GI++RG D ML SYVL S R+ H + ++A++ L + T +E+ S I Sbjct: 438 VFANHGIALRGIAHDTMLQSYVLASHRN-HGMDALAERVLHLKTITYEEVCGKGASQIGF 496 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589 D++ + E+A E++++ L+L L PK+ + KL +VYE+++ P V+ +ME G+ Sbjct: 497 DEVPLDRATEYAAEDADITLRLHRALYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVL 556 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID + L + S + + LL LE+ Y L+G+ FNL+SPKQ+G+I FT+LK P KT +G Sbjct: 557 IDAERLARQSTGLGQRLLELEQQAYALAGQPFNLNSPKQIGEIFFTQLKLPVIKKTASGA 616 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + L+++ D P+ K +L++R L+K+KSTY D LP +N +T RVHT Y A+ + Sbjct: 617 PSTDEEVLQKL-AEDYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV 675 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRLAS +PNLQNIP++T+ G++IR AF++P ++SADYSQIELRI+AH+++ L + Sbjct: 676 TGRLASTDPNLQNIPVRTEEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLR 735 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F D+HR AAE+FGV +V+ + RR+AK INF +IYG+S F LA+ L I R A Sbjct: 736 AFREGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAK 795 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 YI RYF R+PG+ Y+++T+ + GYVET+FGRR+ +IN R ERAAIN Sbjct: 796 LYIDRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAIN 855 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLA--------TKMLLQIHDELVFEVPEEEITTAS 941 AP+QG+AAD+ + +M++V L+ A T+ ++Q+HDELV EVP+EE++ Sbjct: 856 APMQGTAADLIKLSMLAVQDWLDGSPSAGKPGAPMRTRQVMQVHDELVLEVPQEELSLVR 915 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M +LRVPL + V NW+E Sbjct: 916 ERLPELMCGVA----SLRVPLVAEVGVGANWEE 944 >gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 933 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 365/987 (36%), Positives = 543/987 (55%), Gaps = 79/987 (8%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSA-GEPTGAMYGVLNMLKSLISQVQP----SHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + + G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVDGVEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A K G V I + DKD+ QLV L +T+ +D VI+K+GIPPE ++ A Sbjct: 122 ASQASKNGQKVLISTGDKDMAQLVDDNIMLINTMNNSLLDRAGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK + +L Sbjct: 182 LMGDSSDNIPGVAGVGEKTALGLLQGIGSMAQIYANLDKVAELPIRGAKKLGKKLLAEKA 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + L + D + LI++ EF + + V Sbjct: 242 MADLSYALATIKTDVMLEFSPHELAIGDSDNDALIAYFGRYEFKRWLGEV---------- 291 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQ-KLFLERLQ 356 ++ T+ S ++Q KIN Q TP K+ ++ Sbjct: 292 ---------------------MNGAGTVTQS-----AEQPVKINHYQATPAAKIDESAVE 325 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 ++ I+ Y I+ D+ +W++KL + TD +D + + ++ + + Sbjct: 326 NAVKFHIDRSRYENILTEADLARWLEKLNAAKLIAVDTETDGLDYMSANLVGVSFAL--E 383 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + ++ L +H K LS LK EN + KIG N+K+D + Sbjct: 384 NGEAAY--------LPLHLDYLGAPKTLEKNTALSALKPILENPNIGKIGQNLKFDMTIF 435 Query: 477 HRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531 R GI ++G E D ML+SY LDS GR H++ +A+++L + + ++I K+ + + Sbjct: 436 ARNGIDLQGIEFDTMLLSYTLDSTGR--HNMDDLAKRYLGHQTISFEDIAGKGKNQLTFN 493 Query: 532 KISDSQVQEHAIENSNVILQL----WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 +I Q E+A E+++V ++L W L+P+ L+ +Y+ ++ P++ V+S+ME G Sbjct: 494 QIPLEQAGEYAAEDADVTMKLQQVLWQKLQPQ---PGLVELYQSIELPLLGVLSRMERYG 550 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + ID D L S EI++ L +LE + L+G+ FNL+S KQL +ILF KL P KT Sbjct: 551 VLIDSDALFLQSNEITERLTALEMQAHTLAGQPFNLASTKQLQEILFDKLGLPVLQKTPK 610 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + LE++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A Sbjct: 611 GVPSTNEEVLEEL-AYSHELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAV 669 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIPI+ + G++IR+AFI+ K+I+ADYSQIELRI+AH++ L Sbjct: 670 TATGRLSSSDPNLQNIPIRNEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSNDQGL 729 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F DIHR AAEIFG+ +E+V+ + RR+AK INF +IYG+S F L+ QL I R++ Sbjct: 730 INAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFGLSRQLGISRAD 789 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A Y+ YF R+P + +I + + GYVET+FGRR++ EINS + R ER A Sbjct: 790 AQRYMDLYFQRYPNVQTFIHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGAERVA 849 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AAD +RAMI + D M++Q+HDELVFEV E+I S +I Sbjct: 850 INAPMQGTAADTIKRAMIKLDGITRDDP-DIHMIMQVHDELVFEVRSEKIAFFSDLIKQH 908 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A L VPL V++ V NW E Sbjct: 909 MEAAA----ELVVPLIVDVGVGENWDE 931 >gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48] gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Pseudomonas entomophila L48] Length = 922 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 358/987 (36%), Positives = 532/987 (53%), Gaps = 95/987 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L RK+ S FAV+FD Sbjct: 10 LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSLFAVVFD 64 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ ++ +YKANRP +P+ L Q+ + + +A G P + ++G EADD+I T Sbjct: 65 AKGGTFRDAMFAEYKANRPSMPDDLRVQVEPLHASVRALGYPLLCVEGVEADDVIGTLAR 124 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + G V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 125 SSAAAGRPVIISTGDKDMAQLVDGHVTLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 184 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA LL Y NL+ + A R K + E+ + Sbjct: 185 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYQNLDKVPALAIR-GAKTLPAKLEEHRD 243 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DV + + ++ L+ + + L++ +EF + Sbjct: 244 AAFLSYELATIKCDVELDVEVDALVCGEPDREALLALYTEMEFKSWV------------- 290 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E+ R D + + +++ P+ Sbjct: 291 -------------------AEVQRSA-------PRTGDSDAAVAAQEAPEAKV------- 317 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 Y I++ W++KL +F T +DA + + + Sbjct: 318 ------EPKYETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQASIVGL--------- 362 Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474 SF VE ++ L+ H + + + L +E +L LK E+ KIG N KYD Sbjct: 363 --SFAVEPNEAAYVPLA-HDYEGAPAQ--LDREAVLLALKPLLEDPAKGKIGQNAKYDIN 417 Query: 475 VLHRY--GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 +L I MRG D ML SYVLDS + HD+ S+AQK+L +T ++I + Sbjct: 418 ILANGSPAILMRGVAYDTMLESYVLDSTATRHDMDSLAQKYLDHTTIGFEDIAGKGAKQL 477 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITG 587 ++I + +A E+++V L+L L+ +L +L V ++ P++ V++++E G Sbjct: 478 TFNQIPLEKAGPYAAEDADVTLRLHHALQARLANTPSVLPVLMDIEMPLVPVLAKIERQG 537 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 +D LL S E+ L+ LE Y L+GE+FNL SPKQLG IL+ KL P +KT Sbjct: 538 ALVDAALLGVQSGELGAKLVELEREAYALAGEEFNLGSPKQLGAILYDKLGMPVLSKTAK 597 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQ T L+ + P+ K ++++R LSK+KSTY D LP IN RT R+HT Y A Sbjct: 598 GQPSTAEAVLDDLAEQGYPLPKVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAV 657 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 TGRL+S +PNLQNIP++T G++IR+AF++ P KL++ADYSQIELRI+AH+AK L Sbjct: 658 AATGRLSSSDPNLQNIPVRTAEGRRIRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGL 717 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F N LD+HR AAE+FGV + V+ RR AK INF +IYG+S F LA Q+ + R + Sbjct: 718 LHAFRNDLDVHRATAAEVFGVALADVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQ 777 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 + DYI RYF R+PG+ Y+E+T+ + G+VET+FGRR++ +IN+ ++R ER A Sbjct: 778 SQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTA 837 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AADI +RAM++V L D KL +++LQ+HDELV EV E+ + I Sbjct: 838 INAPMQGTAADIIKRAMVAVDNWLTDSKLDARVILQVHDELVLEVREDLVEQVKDEIRGY 897 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M A L VPL V + V +NW E Sbjct: 898 MSGAA----ELDVPLLVEVGVGSNWDE 920 >gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440] gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440] Length = 915 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 356/988 (36%), Positives = 531/988 (53%), Gaps = 100/988 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G+P A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ ++ +YKANRP +P+ L Q+ + + +A G P + ++G EADD+I T Sbjct: 61 AKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + G V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA LL Y NL+ + A R K + E+ + Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIR-GAKTLPAKLEEHRD 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ + +E L+ + + L++ +EF + Sbjct: 240 AAFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWV------------- 286 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E+ RD + + K+ ++ Sbjct: 287 -------------------AELQRDAAKAGDDVAPAVEPAVKVEAK-------------- 313 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 Y I++ W++KL +F T +DA ++ + + Sbjct: 314 ---------YETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQLVGL--------- 355 Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNT-LTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF VE ++ L+ D G L +E +L LK E+ K+G N KYD Sbjct: 356 --SFAVEPHEAAYVPLA----HDYEGAPVQLDREAVLLALKPLLEDPAKAKVGQNAKYDI 409 Query: 474 LVLHRY--GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSS 527 +L I MRG D ML SYVL+S + HD+ S+AQK+L +T ++I Sbjct: 410 NILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQ 469 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEIT 586 + ++I+ + +A E++++ L+L L+ +L + V ++ P++ V++++E Sbjct: 470 LTFNQINLDKAGPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIERQ 529 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G +D +LLK S E+ + LE Y+L+GE FNL SPKQLG IL+ KL P +KT Sbjct: 530 GALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPVLSKTA 589 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 GQ T L+++ P+ + ++++R LSK+KSTY D LP IN RT R+HT Y A Sbjct: 590 KGQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQA 649 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 TGRL+S +PNLQNIPI+T G++IR+AFI+ P KL++ADYSQIELRI+AH+AK Sbjct: 650 VAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEG 709 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L F N LD+HR AAE+FGV +E V+ RR AK INF +IYG+S F LA Q+ + R Sbjct: 710 LLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRK 769 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 ++ DYI RYF R+PG+ Y+E+T+ + G+VET+FGRR++ +IN+ ++R ER Sbjct: 770 QSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERT 829 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAP+QG+AADI +RAM+ V L + L +++LQ+HDELV EV E+ + I Sbjct: 830 AINAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQ 889 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 M +A L VPL V V NW E Sbjct: 890 HMSQAA----QLDVPLLVEAGVGANWDE 913 >gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164] gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164] Length = 919 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 354/979 (36%), Positives = 546/979 (55%), Gaps = 80/979 (8%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 LVDGS F++RAF+A P L+ GL NAI G + + KL++ + +H AVIFD P Sbjct: 6 LVDGSYFLFRAFHALPQLTTS-TGLHTNAIRGAISAIQKLMRRIQP----THMAVIFDTP 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR+E+ P YK +RP +P L Q+P + +A GIP + G EADDII T A Sbjct: 61 EPTFRHELSPLYKGDRPSMPSELSQQIPYLHALIRALGIPLYSLPGAEADDIIGTLAKRA 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 E G V I + DKD+ QLV+ L D+ K++ +DI+ V +K+G+ P +++ L GD Sbjct: 121 EAAGHQVLISTGDKDMAQLVTDKVTLEDSFKDKPMDIQGVFEKFGVWPHQIIDYLTLMGD 180 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248 + D I G+PG+G KTAA LL EYG+L IL N IK + ++I + E + +L Sbjct: 181 ASDGIMGVPGVGAKTAAKLLNEYGSLGGILENVEHIK-GRVSQSIKDNLEGITIDHQLAT 239 Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308 + D+ + I E L L D + L + LEF + + ++ + NT Sbjct: 240 IVCDLDLNISWEDLKLADPHVETLRNLYTELEFRNQLQSLDHPHNPN-----------NT 288 Query: 309 TENKGIAIETEI--DRDTTIKTSQFSSLSDQTSKINSE----QTPQKLFLERLQKLSQYP 362 T + A T + ++D + + SS D+ + QT +L +R+ +++ Sbjct: 289 TYKQASAQATALPANKDIPDEHATLSSEEDRLGEATYHTVLTQTDWELLFQRMSSETRFA 348 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ + T + V ++ F + D DA++ Sbjct: 349 IDTE-------TTSLDYRVAEM-----VGFSVAFDAKDAYY------------------- 377 Query: 423 KVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 V + D G L +E +L+ +K EN+ KIGH++KYD + +G Sbjct: 378 ----------VPLAHDYAGAPEQLNREQVLAQIKPILENDQVEKIGHHLKYDAHIFANHG 427 Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536 I ++G F D ML SYVL+S + H + +A+ +LS+ T +++ ++I Sbjct: 428 IELKGWFFDTMLASYVLNSVATRHGMDDVARLYLSHLTTTFEQVAGKGAKQKSFNQIELE 487 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 +A E+++V +L+ +L KL +L ++ ++ P+ +++ ME GI++D L Sbjct: 488 VASPYAAEDAHVTYRLYEVLAEKLKAHPELCNILYNIEMPVARILTGMEEDGIRLDHGFL 547 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 Q+S E +K + LE+ +++GE FN++SPKQ+G++LF KL G KT TGQ+ T+ Sbjct: 548 DQLSIEFAKTMQELEQQAMEMAGETFNIASPKQVGEVLFEKLGIKGGKKTTTGQFSTSES 607 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE+I ++PI ILE R L+K+KSTY D+L N T RVHT Y A T TGRL+S Sbjct: 608 ILEKI---EHPIAAVILEHRSLAKLKSTYTDALVKQSNNSTHRVHTSYHQALTATGRLSS 664 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIPI+ ++G++IR+AFI+P + L++ADYSQIELR++AH ++ L F + Sbjct: 665 SDPNLQNIPIRGEIGRQIRKAFIAPAGRVLLAADYSQIELRLMAHFSQDDALLDAFRHGQ 724 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+HR AAE+ G+ +E V+ RR AK +NF ++YG+S F L QL R E+ DYIK+Y Sbjct: 725 DVHRRTAAEVLGIALEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQDYIKQY 784 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 FHR+PGI+EY+++T+ + G+V+T+FGRR++ +I++ +R ERAAINAP+QGS Sbjct: 785 FHRYPGIYEYMQRTRQLALEQGFVDTLFGRRLYTPDIDARNMMVRKAAERAAINAPLQGS 844 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AMI+V K L K ++LLQ+HDELVFEV E + + ME Sbjct: 845 AADIIKLAMIAVDKILP--KDQARLLLQVHDELVFEVDENIADELAPQLAEVMESV---- 898 Query: 956 INLRVPLKVNIKVSNNWQE 974 + + VPL V + NW+E Sbjct: 899 VEISVPLLVEVGKGCNWEE 917 >gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71] gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71] Length = 909 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 361/991 (36%), Positives = 544/991 (54%), Gaps = 101/991 (10%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDGSS++YRA++A P L+ G A+ G NM+ +L +K+ S Sbjct: 1 MSDKQPLILVDGSSYLYRAYHALPPLTNSK-GAATGAVKGVINMIRRL----QKDYPEST 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+FD TFR++IYP+YKANRP +P+ L Q+ + + G+P + G EADD+ Sbjct: 56 IAVVFDAKGKTFRDDIYPEYKANRPPMPDDLREQIEPIHSIVRGMGLPLLCEPGVEADDV 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T A + G +V + + DKD+ QLV+ L +T+ + +D + V+ K+GIPPE ++ Sbjct: 116 IGTLAKEASEAGCSVIVSTGDKDMAQLVNDRVTLVNTMNDTLMDPQGVVDKFGIPPELII 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLL-------QEYGNLENILINASRIKQKKRRENI 233 L AL GD +DNIPG+PG+G KTA LL Q Y +L+ + N S K + Sbjct: 176 DLLALMGDKVDNIPGVPGVGEKTALGLLQGLGGLDQIYASLDEVQ-NLSFRGAKTMAAKL 234 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNG----PRLISFLKALEFTKLINRVA 289 + + A LS +L + TD + +PL + L NG L++ + LEF I+ Sbjct: 235 EKERDNAYLSYELATIATD--LKLPLVYADL--ANGVPDKAALLALFRELEFKSWIDE-- 288 Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349 +E E D+ SD T + ++ + Sbjct: 289 --------------------------LENEASGDS----------SDATVEADTREQ--- 309 Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409 +Y +++ W+ +L +F T +++ + + + Sbjct: 310 -----------------NYVTVLDQATFDDWLSRLSEAPLFAFDTETTSLNYMEADIVGL 352 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHN 468 + + + E ++ L+ H+ + + L ++ IL+ LK E+ K+G N Sbjct: 353 SFAV--------ERGEAAYVPLA-HSYPGAPAQ--LDRDAILAALKPLLEDPAKPKLGQN 401 Query: 469 IKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524 +KYD VL RY I M+G D ML SYVLDS + HD+ S+A K+L + +++ Sbjct: 402 LKYDASVLARYDIHMQGIAFDTMLESYVLDSTGTRHDMDSLALKYLGRSTTHFEDVAGKG 461 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQM 583 I D++ Q +A E++ V L L L PKL L V+ ++ P++ V+S+M Sbjct: 462 AKQITFDQVGIEQAGPYAAEDAEVTLALHETLWPKLQESAGLASVFSDIELPLVPVLSRM 521 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E TG +D++ L + S E+ L +LEE ++L+G+ FNL SPKQLG ILF KL+ P Sbjct: 522 ERTGALLDEERLWEQSRELGGRLQALEEEAHNLAGQVFNLGSPKQLGQILFEKLELPVIK 581 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KT G T + L+++ D P+ K ++E R LSK+KSTY D LP IN RT R+HT Y Sbjct: 582 KTPKGAPSTAEEVLQELAL-DYPLPKLLIEHRGLSKLKSTYTDKLPGMINPRTGRIHTSY 640 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 A T TGRL+S +PNLQNIPI+T+ G++IR+AFI+ ++++ADYSQIELRI+AH++K Sbjct: 641 HQAVTATGRLSSSDPNLQNIPIRTEEGRRIRQAFIAAEGYQVVAADYSQIELRIMAHLSK 700 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L + F +LD+H AAE+FGV+++ VS + RR AK INF +IYG+S F LA QLR+ Sbjct: 701 DAGLLEAFRENLDVHSATAAEVFGVSLDAVSGEQRRKAKAINFGLIYGMSAFGLARQLRL 760 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 R EA YI YF R+PG+ EY++ T+ + GYVET+FGRR++ EIN + + Sbjct: 761 DRGEAQRYIDVYFERYPGVREYMDNTRALAHEQGYVETLFGRRLYLPEINVRNKNRQQAA 820 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER AINAP+QG+AADI +RAMI+V + + D + KM++Q+HDELV EV E+++ Sbjct: 821 ERTAINAPMQGTAADIIKRAMITVDRWIADDSVDAKMIMQVHDELVLEVAEDQLDPVCDE 880 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + M A L VPL V + NW E Sbjct: 881 LCKQMSAAA----ELAVPLLVEVGRGANWDE 907 >gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] Length = 928 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 352/980 (35%), Positives = 527/980 (53%), Gaps = 71/980 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P L R DG PV A+ G NML +L KE + A +FD Sbjct: 4 LLLIDGSSYLYRAFHAMPDL-RSPDGRPVGAVYGMVNMLRRL----EKEVEFDYSACVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++YP+YKANRP +PE L Q+ V QA G P + + G EADD+I T Sbjct: 59 AKGKTFRDDLYPEYKANRPSMPEELASQITAVHDVVQASGWPMLVVPGVEADDVIGTLAR 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + G V + + DKD+ QLV+P L +T+ E +D V +K+G+PP ++ L Sbjct: 119 LGAAAGMKVIVSTGDKDMAQLVTPDVTLVNTMTNELLDEAGVKEKFGVPPSLIIDYLTLI 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD +DN+PG+ G KTA L+EYG+L+ I+ A + K EN+ + + R+L Sbjct: 179 GDKVDNVPGVDKCGPKTAVKWLEEYGSLDAIIAQAGSVG-GKVGENLRAALDWLPMGRRL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNG----PRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 + + DV + L H + +G PRL + L F V Sbjct: 238 ITIDCDVDLEADLPHGLPGLQHGQKDKPRLAELFQDLGFRTFYREV-------------- 283 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 TE + + D + + + + LER Sbjct: 284 ------TEGAEMPAVAQRGEDAPRGGEAQGDMFAEPAAPAAPPALSAGALER-------- 329 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 Y I+ + W+ +L SF T ++D ++ + + SF Sbjct: 330 ----HYETILTEAQLDAWLARLMAAKVVSFDTETTSLDPMQARIVGV-----------SF 374 Query: 423 KVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 VE ++ L H + + + L+ LK + E+ K G N+KYD VL + Sbjct: 375 SVEAGHAAYLPLEHHYA--GAPQQLPLEAALAKLKPWLEDASKKKCGQNLKYDCHVLANH 432 Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISD 535 GI++ G +D ML SYVL+S H++ +A++ L + + +EI I ++ Sbjct: 433 GIALAGIADDSMLASYVLES-HQRHNMDDLARRHLGENTVSYEEICGKGAKQIGFSEVDV 491 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 +A E++++ L+L +L + L VY ++ P+ +V+ +ME G+ ID+D L Sbjct: 492 DIAANYAAEDADITLRLNQFFAGQLFGD-LEKVYRDIELPVAEVLFKMERHGVLIDRDKL 550 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTT 653 S ++ +L LE+ Y+L+G+ FNL+SPKQL +ILF KL P+ KT +G + T Sbjct: 551 AAQSHQLGSQMLELEQRAYELAGQPFNLNSPKQLQEILFGKLAIPTKGVKKTPSGGYSTD 610 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 LEQ+ D+P+ K ILE+R L+K+KSTY D LP I +T RVHT Y+ A +TGRL Sbjct: 611 ESVLEQLAL-DHPLPKCILEYRGLAKLKSTYTDKLPTLIYPQTGRVHTTYAQAVAITGRL 669 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 AS +PNLQNIP++T G+++R AFI+P +++SADYSQIELRI+AH++ + + F + Sbjct: 670 ASNDPNLQNIPVRTAEGRRVREAFIAPAGWQIVSADYSQIELRIMAHLSDDEGMLKAFAS 729 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIHR AAE+FGV + V+ RR AK INF +IYG+S F LA QL I RS A YI Sbjct: 730 GEDIHRATAAEVFGVELAAVTSDQRRAAKAINFGLIYGMSAFGLAAQLDIERSAAQQYID 789 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 RYF R+PG+ EY++ T+ R+ GYVET+FGRR++ +I R ERAAINAP+Q Sbjct: 790 RYFMRYPGVAEYMQATREKAREQGYVETVFGRRLYLPDIKLSNPGRRAGAERAAINAPMQ 849 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AAD+ + AMI+V LE L +K+++Q+HDELV EVP+ E+ + + M A Sbjct: 850 GTAADLIKLAMIAVQDWLERDGLQSKLIMQVHDELVLEVPQAELEQVKRRLPEIMAGAA- 908 Query: 954 PKINLRVPLKVNIKVSNNWQ 973 L+VPL + ++W+ Sbjct: 909 ---ELKVPLLAEVGAGDSWE 925 >gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] Length = 912 Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust. Identities = 349/978 (35%), Positives = 555/978 (56%), Gaps = 81/978 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R P AI G NML +L KE + A +FD Sbjct: 4 LLLVDGSSYLYRAFHALPDL-RNRLNEPTGAIYGVLNMLRRL----HKEYRPDYSACVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++IYP YKA+RP +PE L+ Q+ + +A G P + +G EADD+I T Sbjct: 59 AKGKTFRDDIYPQYKAHRPPMPEDLVCQIGPLYACIRAMGWPLLIEEGVEADDVIGTLVE 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A I + DKD+ QLV P L +T+ E +D +++K+G+ P +++ AL Sbjct: 119 RAIARQAQCVIATGDKDIAQLVRPGIWLVNTMNNESLDESGILQKFGVTPAQIIDFLALV 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DNIPG+ +G KTA L +YG L++++ +A IK EN+ + + ++SRKL Sbjct: 179 GDSVDNIPGVEKVGPKTAVKWLDQYGTLDDLIAHADEIK-GVVGENLRKALDWLKVSRKL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + ++ DVP+ + + L+ + RL + LEF + + Sbjct: 238 LTIKCDVPLAMDWQDLVAVPPDTARLTELYEHLEFRSWLRELK----------------- 280 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + +++ ++S +++ D S E N+D Sbjct: 281 ----------QPGPEKNEKAESSVMAAIVDDPSVPEGE-------------------NDD 311 Query: 367 S--YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 Y I+ + W+ + E+ S T +++ +K + + SF + Sbjct: 312 GRDYQIILTDAQLGDWLAQCESAELVSIDTETTSLNPMEAKLVGL-----------SFCM 360 Query: 425 E---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 E +I L+ H + N +++L LK + E++ LKIG N+KYD+ V +G+ Sbjct: 361 ELGQAAYIPLAHHYPGVPSQLNR--EQVLQRLKPWLESDEKLKIGQNLKYDRHVFANHGV 418 Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQ 537 + G D +L SYVL+S SHD+ S+A + L + + E+ I +++ + Sbjct: 419 MLNGIVHDTLLQSYVLES-HLSHDLDSLASRHLGIQTISYDEVTGKGAKRIGFEQVEIHR 477 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +A E++++ L+L +L P + + L ++Y++++ P+++V+ ++E G+ +D DLL+ Sbjct: 478 AGIYAAEDADIPLRLHRVLYPVISQDAHLEYIYQQIEIPLLEVLFRIERNGVLLDTDLLR 537 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 S E+++ L++LE+ + L+G FNL+S KQ+ +ILF + K P KT G T + Sbjct: 538 VQSGELTQQLVALEQQAHSLAGHAFNLNSTKQIQEILFGQHKLPVIKKTPKGVPSTDEEV 597 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 L+++ D P+ K +L++R L+K+KSTY D LP +NK+T RVHT Y+ A +TGRLAS Sbjct: 598 LQRL-ASDYPLPKVLLDYRGLAKLKSTYIDKLPQMVNKQTGRVHTHYAQAVAVTGRLASN 656 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T G++IR AFI+P ++SADYSQIELRI+AHI+ L F D Sbjct: 657 DPNLQNIPVRTPEGRRIREAFIAPDGWLIMSADYSQIELRIMAHISGDAGLIHAFSEGQD 716 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IHR AAE+FGV +E+V+P+ RR+AK INF +IYG+S F LATQL I R+ A +I RYF Sbjct: 717 IHRATAAEVFGVPVEQVNPEQRRYAKVINFGLIYGMSEFGLATQLGIERTAARTFIDRYF 776 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+PG+ +Y+++T+ +Q+GYVET+ GRR+ +I S + + + ERAAINAP+QG+A Sbjct: 777 ARYPGVADYMQRTRELAKQHGYVETVLGRRLQLSDIRSNQRNRQMGAERAAINAPMQGTA 836 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMISVH+ L + +L +K+++Q+HDELV EV +E+ + + ME + Sbjct: 837 ADIIKLAMISVHRWLAEAQLQSKLIMQVHDELVLEVLVDELPVIKENLPRLMENV----L 892 Query: 957 NLRVPLKVNIKVSNNWQE 974 L VPLKV + NW + Sbjct: 893 KLDVPLKVQTGIGKNWDQ 910 >gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1] gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1] Length = 923 Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust. Identities = 353/980 (36%), Positives = 535/980 (54%), Gaps = 70/980 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P LS G P A+ G NML L+ + A + D Sbjct: 4 LVLIDGSSYLYRAFHALPPLSNAA-GEPTGALFGVVNMLRTTLKER-----PDYAAFVID 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+ + +YK +RP +P+ L Q+ + A GI + I G EADD+I T Sbjct: 58 APGKTFRDALDCEYKMHRPPMPDDLRMQVEPMCGIVHALGIDILCIDGVEADDVIGTLAL 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQAL 185 A +G AVTI + DKD QLV P L +T+ ++D VI K+G+ P++++ AL Sbjct: 118 AAVADGIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLAL 177 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS+DN+PG+ G KTAA L EYG+L+ ++ NA +IK K +N+ L+R Sbjct: 178 MGDSVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKGKIG-DNLRIVLPRLLLNRA 236 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 L+ ++TDV + + L L + + L F + FT+ + + D ++ V + Sbjct: 237 LITIKTDVVLEKRPQDLALRERDTEALRDFYRRYGFTQALK------ELDGGSVAVTVAE 290 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 + D ++ + S + Sbjct: 291 QEPGRRRNAGFHVAPDASVAMEINPALSAPGE---------------------------- 322 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 Y I + +Q W+ +L G + TD++D + I + SF E Sbjct: 323 --YETIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGL-----------SFASE 369 Query: 426 TIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 + + D G L+ L+ E+ K+G + KYD VL RYGI + Sbjct: 370 -VGCAAYLPFGHDYPGAPVQLDRGQALALLQPLLEDPAVRKVGQHGKYDMHVLRRYGIVL 428 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY-TRK--EILKSRKSSIPIDKISDSQVQ 539 G+ +D +L S+VL SG + HD+ ++A++ L Y T K +++ IP + + Sbjct: 429 AGYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPFSHVGVQEAT 488 Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++A E++++ L+L +L PKL+ E +L VY ++ P++ V+ ++E G+QID + L + Sbjct: 489 QYAAEDADITLRLHCVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQ 548 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 SA++S+ ++ ++ DL+G FNL SPKQL +LF +LK P KT GQ T + LE Sbjct: 549 SADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALE 608 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 I + + + ILE+R L+K+++TY + LP I+ T RVHT Y A TGRL+S +P Sbjct: 609 AI-VDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATGRLSSSDP 667 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+TD G++IRRAF++P +KLI+ DYSQIELRI+AH++ L FE+ +D+H Sbjct: 668 NLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVH 727 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 +AAE+FG I++V+P RR AK INF +IYG+S F LA QL I R EA DYI YF R Sbjct: 728 CAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDR 787 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 F G+ +++E T+ R GYVET+FGRR++ + I S + R ERAAINAP+QG+AAD Sbjct: 788 FAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAAD 847 Query: 899 ITRRAMISVHK--SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 I +RAM++V + H+ M+LQ+HDELVFE E + T +VH + Sbjct: 848 IIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPT----LVHEVSARMAAAA 903 Query: 957 NLRVPLKVNIKVSNNWQEEN 976 LRVPL V++ V ++W E + Sbjct: 904 QLRVPLVVDVGVGHHWDEAH 923 >gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] Length = 929 Score = 589 bits (1518), Expect = e-165, Method: Compositional matrix adjust. Identities = 356/988 (36%), Positives = 540/988 (54%), Gaps = 86/988 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y +YKANRP +P+ + Q+ + + A G P + ++G EADD+I T Sbjct: 61 AKGGTFRDDMYAEYKANRPSMPDDMRVQIEPLHASVIALGFPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+E V +K+G+ PE+++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTA-ALLLQEYGNLENI-----LINASRIKQKKRRENILE-YAET 239 GDS DNIPG+PGIG KTA LL+ G L+ + ++ I+ K LE + E Sbjct: 181 GDSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEEHKEM 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS +L ++ DVP+ + L+ L L + + +L+ LEF ++ Sbjct: 241 AFLSYQLATIKVDVPLDVGLDDLHLGEPDREKLVELYSLLEFKSWLD------------- 287 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 E+ RD K + S +E TP + Q + Sbjct: 288 -------------------ELQRDA--KRVELS---------GAEATPAAV---PPQAVE 314 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 Q P+ Y I++ + W++KL+ +F T +DA ++ + ++ S + + Sbjct: 315 QAPLEL-QYETILDQERFDAWLEKLKGAKLIAFDTETTGIDAQQAQLVGLSFS-VKAGEA 372 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--- 476 + ++ +DS +L LK E+ LK+G + K+D +L Sbjct: 373 AYVPLTHSYMGAPAQLDRDS---------VLLALKPLLEDPKLLKVGQHAKFDMNILANC 423 Query: 477 -----HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSS 527 GI++RG D ML SYVL+S + HD+ S+AQK+L ++ ++I Sbjct: 424 AIGGDQANGITVRGVAFDTMLESYVLNSTATRHDMDSLAQKYLDHSTVSFQDIAGKGAKQ 483 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEIT 586 + D+I Q +A E+++V L+L +L KL + L V ++ P++ V++++E Sbjct: 484 LTFDQIPLEQAGPYAAEDADVTLRLHQVLFDKLSAIPSLASVLTDIEMPLVPVLARIERQ 543 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G +D LL S E+ +++LE ++++GE+FNL SPKQLG IL+ KL P KT Sbjct: 544 GALVDDKLLGVQSIELGDKMVALEREAFEIAGEEFNLGSPKQLGSILYDKLGLPVLKKTA 603 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 GQ T + L ++ D P+ + ++++R +SK+KSTY D LP IN RT R+HT Y A Sbjct: 604 KGQPSTAEEVLAKLAEDDYPLPRVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQA 663 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 TGRL+S +PNLQNIP++T G++IR+AFI+PP KL++ADYSQIELRI+AH+++ Sbjct: 664 VASTGRLSSSDPNLQNIPVRTAEGRRIRQAFIAPPGYKLLAADYSQIELRIMAHLSRDEG 723 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L F N+LD+H AAE+F V ++ V+ RR AK INF +IYG+ +L + + Sbjct: 724 LLNAFRNNLDVHTATAAEVFKVELKDVTSDQRRSAKAINFGLIYGMGAQKLGKDIGVDTK 783 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 +A YI YF R+PG+ EY+++T+ GYVETIFGRR++ EINS K R ER Sbjct: 784 QAKAYIDTYFARYPGVREYMDRTRAQAADQGYVETIFGRRLYLPEINSNKPQERAGAERT 843 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAP+QG+AADI ++AM++V L L +++LQ+HDELV EV E+ + + I Sbjct: 844 AINAPMQGTAADIIKKAMVAVDNWLASSGLDARVILQVHDELVLEVREDLVDQVREEIRG 903 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A L VPL V + V NNW E Sbjct: 904 HMSGAA----TLDVPLLVEVGVGNNWDE 927 >gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT 11859] gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT 11859] Length = 950 Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust. Identities = 379/983 (38%), Positives = 561/983 (57%), Gaps = 78/983 (7%) Query: 11 DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAV 70 DGS+FI+RA++A P LS G P NAI GF +ML L+ K+ + A + D Sbjct: 23 DGSNFIFRAYHALPPLS-TSTGTPTNAIRGFLSMLRVLM----KDVPTDYVACVVDPKGK 77 Query: 71 TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130 TFR++IYPDYKANRP +PE L Q+PL+ Q GIP ++I G EADD I T T A Sbjct: 78 TFRSDIYPDYKANRPPMPEDLSVQIPLIFEGVQKEGIPFLQIPGIEADDTIGTLTKKAVA 137 Query: 131 EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPEKMVCLQALTGD 188 EGF V I + DKD QLV+ L +T+ ++ ++ E V KK+G+PPEK++ AL GD Sbjct: 138 EGFNVVIATGDKDFAQLVNDNVLLVNTMGKDNSWLNSEGVEKKFGVPPEKIIDFLALMGD 197 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248 IDN+PG+P G KTAA + E+G+++ ++ NA ++K K EN+ ++R+LV Sbjct: 198 KIDNVPGVPKCGEKTAAKWITEFGSVDGVIENAEKVKGK-IGENLRSALGFLPIARQLVT 256 Query: 249 LRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 ++TD ++ +P LE L L+ N L+ + LEF + T D ++P L+ Sbjct: 257 IKTDADLSAEVPSLESLKLKTPNRTELLDYYNKLEFRSWAKELKKT-DV-PGEVKP--LE 312 Query: 306 INTTENKGIAIETE-IDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 +TT K A+ ++ DT L Q + +E+T + + Sbjct: 313 TSTTAQKRAAVGAAPVEGDTL-------DLFSQEQESETERTLEII-------------- 351 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 T K++ ++ L T F ++ D P+ +A T D K TS+ Sbjct: 352 ----TDKAKAKELAAHLEDLVTKDGFEFYVLADGSSQQEYMPVGVAFGTTDGK--TSY-- 403 Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 + ID V +Q T KEI + E++ +K G++ KY K V GI++ Sbjct: 404 --VPIDNDVLLAQGLTLGTF--KEIFG---RVLEHKKPIKCGYDTKYMKHVFANVGINLA 456 Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540 G +D+ML SYVL++ RS H I +A WL Y +E+L + ++S + E Sbjct: 457 GVSDDVMLESYVLEAHRS-HTIEKLAANWLKYELRGEEELLGKGAKKLSFSQVSVEKAAE 515 Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 A E ++ +L L + L + KL +Y ++ P+ DV+ +ME G+ ID LL Q + Sbjct: 516 FASERVFIVSRLNRLFKKALSDDAKLEKIYRDIEMPLSDVLFKMEQNGVLIDTKLLDQQT 575 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTK---TGQWKTTAQ 655 A+++ LEE ++++GE F LSSPKQLG+ILF K+ GAK K +G + T+ + Sbjct: 576 AQLNTKARELEEQAFEVAGENFKLSSPKQLGEILFDKMGVVLEGAKPKKTISGNYSTSEE 635 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 L ++ + P+ K LE+R ++K+ +TY + LP ++ + RVHT + A +TGRL+S Sbjct: 636 VLSEL-AENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGRVHTTFEQAVAVTGRLSS 694 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 PNLQNIPI+T+ G+K+R AFIS KLISADYSQIELRI+AH++ L + F+N+ Sbjct: 695 TNPNLQNIPIRTEEGRKVREAFISASGCKLISADYSQIELRIMAHLSADKRLVEAFKNNE 754 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR AAE+FG +KV+P RR AK INF ++YG+SPF LA L I R EA +YI ++ Sbjct: 755 DIHRATAAEVFGKERDKVTPNDRRIAKVINFGLMYGMSPFGLAKNLGIGRDEAKNYINKF 814 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F RFPG+H+Y+E+T+ + GYVET FGRR+ EI++ + R ERAAINAP+QG+ Sbjct: 815 FARFPGVHDYMERTRALADRQGYVETTFGRRLWLPEIHA-GGARRAAAERAAINAPMQGT 873 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD+ + +MI+V K +E+ L +K++LQIHDEL+ EVPE E+ + K LPK Sbjct: 874 AADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEV---------DLVKENLPK 924 Query: 956 I-----NLRVPLKVNIKVSNNWQ 973 I L VPL + V +NW+ Sbjct: 925 IMDSVTELHVPLIAEVGVGDNWE 947 >gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] Length = 890 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 347/941 (36%), Positives = 532/941 (56%), Gaps = 67/941 (7%) Query: 48 LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107 ++++ ++ + AVIFD TFR+E+Y YKA+RP +P+ L Q+ + +A G+ Sbjct: 1 MIRSMMRQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGL 60 Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167 P + I+G EADD+I T A + G V I + DKD+ QLV L +T+ +D E Sbjct: 61 PLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREG 120 Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-- 225 VI+K+GIPPE ++ AL GD +DNIPG+PG+G KTA LLQ G LE + N +I Sbjct: 121 VIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAAL 180 Query: 226 ----QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 K + + E A+LS +L ++ DV + + L+ + + L+S L F Sbjct: 181 GFRGSKTMAQKLEENRGNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAF 240 Query: 282 TKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341 + + LD T GI + D KTS S++ T+ Sbjct: 241 KSWLTEL---------------LDGGT----GI-----VTADEQTKTS---SVTVSTAAT 273 Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401 ++ P+ I+ Y I+N +D Q W++KL+ +F TD +D Sbjct: 274 HAAAIPES---------PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDY 324 Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461 + + ++ + + + + V ++D +D +++ LK E+E Sbjct: 325 MVANLVGMSFA-VAEGEAAYLPVAHDYLDAPQQLERDW---------VIAQLKPLLEDES 374 Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517 K+G N+KYD V+ RYG+ +RG D ML SYV +S HD+ S+A ++L ++ Sbjct: 375 KAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISF 434 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDK 574 +++ K+ + ++I+ + ++A E+++V L+L + P ++E KL VY ++ Sbjct: 435 EQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEM 492 Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P++ V+S++E TG+ ID LL S EI+ L LE+N Y+L+G+ FNLSSPKQL ILF Sbjct: 493 PLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILF 552 Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 ++K P KT +G T + L+++ D P+ K ++E+R L+K+KSTY D LP IN Sbjct: 553 EQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINP 611 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754 T RVHT Y A T TGRL+S +PNLQNIP++ + G++IR+AF++P K+++ DYSQIE Sbjct: 612 STGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIE 671 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LRI+AH++ L F + DIH AAEI GV I++VS + RR AK +NF +IYG+S Sbjct: 672 LRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSA 731 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++ Q GYVETIFGRR+H EI S Sbjct: 732 FGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITS 791 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVP 933 + R ERAAINAP+QG+AADI ++AM+ V + +E + K+L+Q+HDELVFEV Sbjct: 792 RNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVK 851 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E ++ + ME A L VPL +NW++ Sbjct: 852 ESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQ 888 >gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42] gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42] Length = 922 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 351/986 (35%), Positives = 530/986 (53%), Gaps = 74/986 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDGSS++YRAF+A P L R G P +A G + +LQ +KE A + Sbjct: 1 MTRPKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPASAPTGAIRGMINMLQALKKEVPADY 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A +FD TFR+ +YP+YK +R +P+ L Q+ + + G P + I G EADD+ Sbjct: 60 AACVFDASGPTFRDALYPEYKQHRAPMPDDLRAQIEPIHEVVRLLGWPVLCIPGVEADDV 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T A +G V I S DKDL QLV+ + DT+ +K D+ V ++G+PP MV Sbjct: 120 IGTLAATAAGQGMQVVISSGDKDLSQLVNENITIIDTMNGKKRDVAGVTAEFGVPPTLMV 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYAE 238 QAL GD++DN+PG+P +G KTAA L EYG+L+ +L NA IK + L++ Sbjct: 180 DYQALVGDAVDNVPGVPKVGPKTAAKWLTEYGSLDALLANAGAIKGVAGENLRGALDWLP 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 TAR+ LV ++TD + L+ L P + + E + Y Sbjct: 240 TARM---LVTIKTDCDLAGHLDGL-------PAIDAIAVGAEQADALRDFYQKYGF---- 285 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 ++ A+ + + D F++ + ++Q Sbjct: 286 -----------KSLARALPSAVVPDAGASGDLFATPDASAVAVQAQQ------------- 321 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 +Y I+ + + W+ +L+ A+ T ++D ++ + + Sbjct: 322 -----REVTYDTILTWEQLDGWLARLKAAPLAALDTETTSLDELRAEIVGV--------- 367 Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 SF VE +I L+ H D+ + L E+L L+ + E+ K+G ++KYD+ V Sbjct: 368 --SFSVEPGAAAYIPLA-HNGPDAPPQLPLA-EVLERLRPWLEDPACPKLGQHVKYDRHV 423 Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 +GI +RG+ D ML SYVL+ H +AS+A++ T +++ IP Sbjct: 424 FANHGIQVRGYAHDTMLQSYVLEV-HKPHGLASLAERHTGRTGISYEDLCGKGAKQIPFA 482 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ + ++ E+S+ L + +L P+L + KL +YE L+ + + ++E G+ I Sbjct: 483 QVPVDKAAAYSCEDSDQTLDVHRVLWPQLQADDKLRGIYE-LEMACSETLFRIERNGVLI 541 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D L S + + +L LE+ Y ++G+ FNL SPKQLG+I F KL P KT TG Sbjct: 542 DAGKLAAQSHALGQRILQLEQEAYAIAGQPFNLGSPKQLGEIFFDKLGMPVVKKTATGAR 601 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + LE++ D P+ +LE R L K+K TY D L + RT RVHT Y+ A +T Sbjct: 602 STDEEVLEKL-AEDYPLPAKLLEHRSLCKLKGTYTDKLSTLADPRTGRVHTHYAQAVAVT 660 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S EPNLQNIPI+T G+++R AF++P + + SADYSQIELRI+AHI+ L Sbjct: 661 GRLSSNEPNLQNIPIRTPEGRRVREAFVAPAGRVIASADYSQIELRIMAHISGDEALLHA 720 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F LD+HR AAE+FGV +++VS + RR+AK INF +IYG+S F LA L I AA Sbjct: 721 FREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAA 780 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI RYF R+PG+ +Y+E+TK + GYVET+FGRR++ EINSP R ERAAINA Sbjct: 781 YIDRYFQRYPGVKQYMEETKARAKARGYVETVFGRRLYLPEINSPNGPRRGAAERAAINA 840 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AAD+ ++AM++V L+ K M++Q+HDELVFE+PE E+ + I M Sbjct: 841 PMQGTAADLIKKAMVAVQGELDARKPEVLMIMQVHDELVFELPEGEVDWLRREIPRLMAG 900 Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976 L+VPL + V +W + + Sbjct: 901 VA----ALQVPLLAEVGVGPDWDKAH 922 >gi|332665102|ref|YP_004447890.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100] gi|332333916|gb|AEE51017.1| DNA polymerase I [Haliscomenobacter hydrossis DSM 1100] Length = 935 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 357/985 (36%), Positives = 553/985 (56%), Gaps = 74/985 (7%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+DG + +YRA +A PL++ K G+ +AI GF LW L++ + +H AV Sbjct: 6 LFLLDGHALVYRAHFAFITKPLVNSK--GVNTSAINGFTRQLWDLMRTEK----PTHIAV 59 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+++Y YKANR + P+ + +P ++ +A IP + +QG+EADD+I T Sbjct: 60 AFDPHGPTFRHDMYEPYKANREEQPQDISIAIPWIKKIIEAMHIPIVMVQGYEADDVIGT 119 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP-EK 178 AEKEG+ V +++ DKD QLVS +Y ++ E + ++ V + WGI ++ Sbjct: 120 LAKQAEKEGYTVYMVTPDKDYGQLVSENIFMYKPSRQGNGIEIMGVKEVCENWGIKRVDQ 179 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ L L GD++DNIPGIPG+G KTAA LL + +E ++ N + +K K++ E + +YAE Sbjct: 180 VIDLLGLMGDAVDNIPGIPGVGEKTAAKLLDRFDTIEGVIANVNELKGKEK-ERVEQYAE 238 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS+KL ++ T VPI + I++ N L K LEF L ++ Sbjct: 239 QAMLSKKLAIIETQVPIQFNADQYIIDPMNREALSEIFKELEFRSLATQILG-------- 290 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E E T Q S D I TPQK + Sbjct: 291 ------------------EGETRPSTPGPGQQGSLFGDTEPAI---YTPQKGANLTAHSV 329 Query: 359 SQYPINNDSYT-KIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 ++ I+N + +VN+ + + + +L F T ++ ++ + ++ + Sbjct: 330 AEKTIDNTPHEYHLVNSPEAMHKLAAELAQQSEFCFDTETTHVEPTQAELVGMSFAY--- 386 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 K ++ V GK + ++ + ENE LKI N+KYD +V Sbjct: 387 KSGEAYYVPV------------PAGKEN-AQAVVEIFRPVLENEKILKIAQNLKYDAIVF 433 Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPID 531 YG+ +RG + D M+ Y+L+ H + +A+ +LSY+ I K K + + Sbjct: 434 KWYGVEVRGPYFDTMVAHYLLEP-EMRHGMDYLAETYLSYSPISIEMLIGKKGKDQLNMS 492 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 +I +V ++A E++++ LQL L PKL + +++ ++ P+I V++ +E GI+ID Sbjct: 493 QIDLEKVTDYAAEDADITLQLKELFAPKLEEGGVQELFDTIECPLIKVLADLEYEGIRID 552 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQW 650 D L S E+ + +LE++IY+ +G KFN+ SPKQ+GD+LF +LK P GAKTKTGQ+ Sbjct: 553 SDYLDVYSKELEIQIQTLEQSIYEQAGVKFNIGSPKQVGDLLFERLKVPYKGAKTKTGQY 612 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T L ++ + PII+ IL +R L+K+KSTY D+LP +N RT R+H+ ++ A T Sbjct: 613 STDEDKLLEL-APEFPIIQTILNFRGLAKLKSTYVDALPKMVNPRTGRIHSSFNQALAAT 671 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQ 769 GRL+S PNLQNIP++T G K+RRAFI + L+SADYSQIELR++A I+ + + Sbjct: 672 GRLSSNNPNLQNIPVRTPEGAKVRRAFIPRDDQHTLLSADYSQIELRLIADISGDVAMLE 731 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F+N+ DIH AA++F V + V+ + R AKT+NFSI+YG L+ QL I R+EA Sbjct: 732 AFQNNQDIHTATAAKVFNVPFDLVTREQRYQAKTVNFSILYGAGATNLSRQLSIKRTEAK 791 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 + I YF + G+ Y+ R+NGYV T+ GRR + EINS S R+ ER A+N Sbjct: 792 ELIDAYFALYSGLKGYMVTVVEDARKNGYVTTLMGRRRYLREINSKSSLERSNAERVAVN 851 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 P+QGSAAD+ + AM+++H++L + L TKM+LQ+HDELVF+VP EE+ IIV M Sbjct: 852 TPVQGSAADMIKVAMVNIHQALLEQGLKTKMILQVHDELVFDVPNEELEIVKPIIVEKM- 910 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 ++ LPK L+VP++V + NW E Sbjct: 911 RSALPK--LKVPIEVGLGTGQNWLE 933 >gi|332526049|ref|ZP_08402187.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2] gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2] Length = 915 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 343/986 (34%), Positives = 537/986 (54%), Gaps = 94/986 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R DG P A+ G M+ +L R++ A H +FD Sbjct: 8 LLLVDGSSYLYRAYHALPDL-RSPDGFPTGALHGMVAMMKRL----REQVPAEHAVCVFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ Y DYKA+RP +PE L Q+ + + G P +E+ G EADD I T Sbjct: 63 AKGPTFRDDWYADYKAHRPSMPEPLAQQVAPIHEVVRLLGWPVLEVPGIEADDAIGTLAC 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +A++ G V + + DKDL QLV L +T+ E +D V+ K+G+PP+++V L Sbjct: 123 VAKRAGHRVVVSTGDKDLAQLVDEHVTLINTMSNETLDPAGVLAKFGVPPQRIVDYLTLV 182 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DNIPG+ +G KTA + E+G+L+ ++ A+ IK EN+ + R+L Sbjct: 183 GDAVDNIPGVEKVGPKTAVKWITEHGSLDGVMAAAATIKGVAG-ENLRRALDWLPQGRRL 241 Query: 247 VMLRTD------VPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 V + D VP L+ L L + L+ F + F Sbjct: 242 VTVACDCDLAAHVPGWPALDALALRPADEAGLLDFYRRYGF------------------- 282 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + G +E ++ D T+ + + + E Sbjct: 283 ---------KTWGRELEGQLGGDVPAATATGTVSAAAAIDVARE---------------- 317 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 Y + + + W+++L+ + TD+++ ++ + I Sbjct: 318 -------YETVTTWERLDAWLERLQAAELVAIDTETDSLEPMKARIVGI----------- 359 Query: 421 SFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 SF VE ++ L+ H D+ + L +L+ LK + E+ K+G N+KYD+ V Sbjct: 360 SFAVEPGRGAYVPLA-HAGPDAPEQLPLDA-VLARLKPWLEDASRAKLGQNLKYDRHVFA 417 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-----KWLSYTRKEILKSRKSSIPID 531 GI++ G D ML SYVL++ H + S+A+ K LSY +++ + IP Sbjct: 418 NAGIALAGVRHDTMLESYVLEA-HKPHSLESLAERHLGRKGLSY--EDLCGKGVNQIPFA 474 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590 ++ ++ E++ E+S + L + +L P++ + L VYE ++ P+ +V++++E G+ + Sbjct: 475 QVDVARATEYSAEDSEMALHVHQVLWPEIEADAGLRRVYEAIEMPVAEVLARIERHGVLV 534 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D L + S ++++ +++LE+ +Y ++ + FNL SPKQ+G+ILF KL P +T +G Sbjct: 535 DPQELARQSRDLAERMVALEQEVYAIAEQPFNLGSPKQIGEILFGKLGLPVKKRTASGA- 593 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 +T +D+ D P+ ILE R L+K+K TY D LP +N T RVHT Y+ A +T Sbjct: 594 PSTDEDVLTELAADYPLPARILEHRSLAKLKGTYTDKLPAMVNPATGRVHTNYAQAVAVT 653 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRLAS EPNLQNIPI+T G+++RRAF++PP ++SADYSQIELRI+AHI++ L + Sbjct: 654 GRLASNEPNLQNIPIRTPEGRRVRRAFVAPPGHVILSADYSQIELRIMAHISEDEGLLRA 713 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F LD+HR AAE+FG+ + +V+ + RR+AK INF +IYG+ + LA L I + A D Sbjct: 714 FSEGLDVHRATAAEVFGMPLAEVTSEQRRYAKVINFGLIYGMGAYGLAANLGIEQKAAKD 773 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI RYF RF G+ Y+++T+ ++ GYVET+FGRR+ EINS R+ ER AINA Sbjct: 774 YIDRYFARFAGVKRYMDETRVRAKEKGYVETVFGRRLWLPEINSGNGPRRSGAERQAINA 833 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AAD+ + AMI+V K L+ AT+M++Q+HDELV EVPE E+ A I M Sbjct: 834 PMQGTAADLIKLAMIAVQKELDASGRATRMVMQVHDELVLEVPEAELDWAKDAIPRLMAG 893 Query: 951 ACLPKINLRVPLKVNIKVSNNWQEEN 976 L+VPL + V NW E + Sbjct: 894 VA----ALKVPLLAEVGVGANWDEAH 915 >gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587] gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2] gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587] gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2] Length = 886 Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust. Identities = 346/935 (37%), Positives = 529/935 (56%), Gaps = 67/935 (7%) Query: 54 KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113 ++ + AVIFD TFR+E+Y YKA+RP +P+ L Q+ + +A G+P + I+ Sbjct: 3 RQFASDRMAVIFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIE 62 Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173 G EADD+I T A + G V I + DKD+ QLV L +T+ +D E VI+K+G Sbjct: 63 GVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFG 122 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QK 227 IPPE ++ AL GD +DNIPG+PG+G KTA LLQ G LE + N +I K Sbjct: 123 IPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSK 182 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 + + E + A+LS +L ++ DV + + L+ + + L+S L F + Sbjct: 183 TMAQKLEENRDNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTE 242 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347 + LD T G+ + D KTS S++ T+ ++ P Sbjct: 243 L---------------LDGGT----GV-----VTADEQTKTS---SVTVSTAASHAAAIP 275 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 + I+ Y I+N +D Q W++KL+ +F TD +D + + Sbjct: 276 ES---------PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLV 326 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 ++ + + + + V ++D +D +++ LK E+E K+G Sbjct: 327 GMSFA-VAEGEAAYLPVAHDYLDAPQQLERDW---------VIAQLKPLLEDESKAKVGQ 376 Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 N+KYD V+ RYG+ +RG D ML SYV +S HD+ S+A ++L ++ +++ Sbjct: 377 NLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGK 436 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVV 580 K+ + ++I+ + ++A E+++V L+L + P ++E KL VY ++ P++ V+ Sbjct: 437 GKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHP--LIEQDAKLEQVYREIEMPLVPVL 494 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 S++E TG+ ID LL S EI+ L LE+N Y+L+G+ FNLSSPKQL ILF ++K P Sbjct: 495 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSPKQLQTILFEQMKLP 554 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 KT +G T + L+++ D P+ K ++E+R L+K+KSTY D LP IN T RVH Sbjct: 555 VLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVH 613 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T Y A T TGRL+S +PNLQNIP++ + G++IR+AF++P K+++ DYSQIELRI+AH Sbjct: 614 TSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAH 673 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F + DIH AAEI GV I++VS + RR AK +NF +IYG+S F LA Q Sbjct: 674 LSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQ 733 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L IPR EA +Y+ +YF R+PG+ +Y+E T++ Q GYVETIFGRR+H EI S + R Sbjct: 734 LGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRR 793 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITT 939 ERAAINAP+QG+AADI ++AM+ V + +E + K+L+Q+HDELVFEV E ++ Sbjct: 794 KAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSE 853 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME A L VPL + +NW + Sbjct: 854 IESKVQQLMESAA----ELAVPLVADAGHGDNWDQ 884 >gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1] gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1] Length = 919 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 358/992 (36%), Positives = 543/992 (54%), Gaps = 108/992 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS++YRAF+A P L+ DG P NA G +M+ L+ + I VIFD Sbjct: 10 MVLVDGSSYLYRAFHAIPPLTTS-DGQPTNAARGVISMIRSLIGKYPESPIV----VIFD 64 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EIY +YKA RP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 65 AKGKTFRDEIYSEYKAQRPPMPDDLRLQIEPIHRMIEAMGLPLVIIEGVEADDVIGTIAK 124 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + G V + + DKD+ QLV+ L +T+ + +DI V K+GIPPE ++ AL Sbjct: 125 QVGEAGRDVIVSTGDKDMAQLVTDKVTLVNTMTDTVMDIAGVKDKFGIPPELIIDYLALM 184 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENIL----------INASRIKQKKRRENILEY 236 GD +DNIPG+PG+G KTA LLQ G++++I S+ KK +N Sbjct: 185 GDKVDNIPGVPGVGEKTALALLQGIGSIKDIYERLDDIAPLGFRGSKTMSKKMEDN---- 240 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-------- 288 + A LS L ++ DV + + L E N L + + LEF + + Sbjct: 241 RDMAELSYTLATIKCDVELPFDMHALKNEPANKEVLREWFQKLEFKTWLRDIDKAPMAAG 300 Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348 T D D P V DI E+ +T + SQF+ Sbjct: 301 TTVNDSDEGEDTPAVSDI------------EVQYETVLDKSQFN---------------- 332 Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408 QW+++L +F T +++ ++ + Sbjct: 333 ------------------------------QWLEQLNQAELVAFDTETTSLNYMQAELVG 362 Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGH 467 ++++ K +I ++ H +D+ L ++ +L LK + E+E K+G Sbjct: 363 VSVAIEAGK--------AAYIPVA-HDYEDAP--EQLDRDWVLEQLKPWLEDEGKAKVGQ 411 Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 ++KYD VL+ Y I++RG + D ML SYV +S + HD+ S++ K+L ++ ++I Sbjct: 412 HLKYDANVLNNYDITLRGIKFDTMLESYVFNSTGTRHDMDSLSSKFLGHSTVKFEDIAGK 471 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQ 582 ++I Q +A E++++ L+L + PKL +L+ V+ ++ P++ V+++ Sbjct: 472 GAKQKTFNQIDLEQAAFYAAEDADITLRLHQAILPKLEKTPELVSVFSDIELPLVPVLAK 531 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME TG ID D L SAEI+ L +E ++ +G++FNLSSPKQL +ILF K P Sbjct: 532 MEQTGALIDPDRLHAQSAEIASRLQEVEIKAHEEAGQEFNLSSPKQLQEILFEKQGLPVI 591 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KT GQ +TA+ + Q + + + I+E R L+K+KSTY D LP I + T R+HT Sbjct: 592 KKTPKGQ-PSTAEPILQELAENYELPRLIMEHRSLAKLKSTYTDKLPEMI-QHTGRIHTS 649 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A T TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH++ Sbjct: 650 YHQAVTATGRLSSTDPNLQNIPIRTQEGRRIRQAFVAPEGHKLVAADYSQIELRIMAHLS 709 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L F + D+H+ AAE+F V ++ V+ + RR AK INF +IYG+S F LA QL Sbjct: 710 QDKGLLDAFAHDEDVHKATAAEVFEVAVDDVTAEQRRRAKAINFGLIYGMSAFGLAKQLG 769 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 I R EA Y++RYF R+PG+ Y+E T+ ++ GYVETIFGRR++ EI + + +R Sbjct: 770 ISRPEAQKYVQRYFERYPGVRTYMETTRENAKEKGYVETIFGRRLYLPEIKARNAMMRQA 829 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAP+QGSAADI +RAMI +H L D L KM++Q+HDEL+FEV E+++ A Sbjct: 830 AERTAINAPMQGSAADIIKRAMIKMHNWLADTDLGVKMIMQVHDELIFEVAEKDLEAAQA 889 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I+ M+ + + VPL V V +NW E Sbjct: 890 KIIDIMQNST----EIDVPLLVEAGVGDNWDE 917 >gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1] gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1] Length = 915 Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust. Identities = 356/988 (36%), Positives = 530/988 (53%), Gaps = 100/988 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G+P A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ ++ +YKANRP +P+ L Q+ + + +A G P + ++G EADD+I T Sbjct: 61 AKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + G V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA LL Y NL+ + A R K + E+ + Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPTLAIR-GAKTLPAKLEEHRD 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ + +E L+ + + L++ +EF + Sbjct: 240 AAFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWV------------- 286 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E+ RD + +K+ + Sbjct: 287 -------------------AEVQRDAAKAGDDVGPAVEPAAKVEPK-------------- 313 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 Y I++ W++KL +F T +DA ++ + + Sbjct: 314 ---------YETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQLVGL--------- 355 Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNT-LTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF VE ++ L+ D G L +E +L LK E+ K+G N KYD Sbjct: 356 --SFAVEPHEAAYVPLA----HDYEGAPVQLDREAVLLALKPLLEDPAKAKVGQNAKYDI 409 Query: 474 LVLHRYG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSS 527 +L I MRG D ML SYVL+S + HD+ S+AQK+L +T ++I Sbjct: 410 NILANGSPPIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQ 469 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEIT 586 + ++I+ + +A E++++ L+L L+ +L + V ++ P++ V++++E Sbjct: 470 LTFNQITLDKAGPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIERQ 529 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G +D +LLK S E+ + LE Y+L+GE FNL SPKQLG IL+ KL P +KT Sbjct: 530 GALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPVLSKTA 589 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 GQ T L+++ P+ + ++++R LSK+KSTY D LP IN RT R+HT Y A Sbjct: 590 KGQPSTAEAVLDELAEQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQA 649 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 TGRL+S +PNLQNIPI+T G++IR+AFI+ P KL++ADYSQIELRI+AH+AK Sbjct: 650 VAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEG 709 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L F N LD+HR AAE+FGV +E V+ RR AK INF +IYG+S F LA Q+ + R Sbjct: 710 LLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRK 769 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 ++ DYI RYF R+PG+ Y+E+T+ + G+VET+FGRR++ +IN+ ++R ER Sbjct: 770 QSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERT 829 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAP+QG+AADI +RAM+ V L + L +++LQ+HDELV EV E+ + I Sbjct: 830 AINAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVEQVKDEIRQ 889 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 M +A L VPL V V NW E Sbjct: 890 HMSQAA----QLDVPLLVEAGVGANWDE 913 >gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905] Length = 884 Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust. Identities = 342/927 (36%), Positives = 524/927 (56%), Gaps = 67/927 (7%) Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H AV+FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EAD Sbjct: 12 THAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEAD 71 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+I T AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE Sbjct: 72 DVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPEL 131 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRREN 232 ++ AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K Sbjct: 132 IIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAK 191 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 + + E A LS +L ++TDV + + E L ++ L+ K EF + I V Sbjct: 192 LEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWIADVEAGK 251 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 A +P Q +S++D+ ++ + Sbjct: 252 WLQAKGAKPAA------------------------KPQETSVADEAPEVTATV------- 280 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + Sbjct: 281 ----------ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA 330 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 ++ V ++D S++ L LK E+E LK+G N+KYD Sbjct: 331 -IEPGVAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYD 380 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528 + +L YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + Sbjct: 381 RGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQL 440 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITG 587 ++I+ + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G Sbjct: 441 TFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNG 500 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 ++ID +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT Sbjct: 501 VKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPG 560 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T+ + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A Sbjct: 561 GAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV 619 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L Sbjct: 620 TATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL 679 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR E Sbjct: 680 LTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKE 739 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A Y+ YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAA Sbjct: 740 AQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAA 799 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H Sbjct: 800 INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQ 858 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 + + C L VPL V + NW + Sbjct: 859 LMENC---TRLDVPLLVEVGSGENWDQ 882 >gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2] gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2] Length = 936 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 352/989 (35%), Positives = 538/989 (54%), Gaps = 66/989 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRAF+A P L R G +A G + +LQ RKE A++ Sbjct: 1 MTDPKTLVLVDGSSYLYRAFHALPDL-RVVPGDARSAATGAIRGMINMLQALRKERPANY 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A +FD TFR+ IYP+YKA R +PE L Q+ + G P + I G EADD+ Sbjct: 60 AACVFDASGPTFRDSIYPEYKARRAPMPEDLRAQIAPTHEVVRLLGWPVLAIAGVEADDV 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T A +G V + S DKDL QLV+ + DT+ +K D+ V ++G+PP+ MV Sbjct: 120 IGTLAVTAAAQGMQVLVSSGDKDLSQLVNQHITIVDTMSGKKRDVAGVTAEFGVPPQLMV 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 Q L GD++DN+PG+P +G KTAA LQEYG+L+ +L +A IK EN+ Sbjct: 180 DYQTLMGDAVDNVPGVPKVGPKTAAKWLQEYGSLDALLAHAHEIK-GVVGENLRGAIGWL 238 Query: 241 RLSRKLVMLRTD------VPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 R+LV +RTD VP L+ L + P L +F + F L + Sbjct: 239 PTGRQLVTIRTDCDLAAHVPGLPALDALAMGAPQVPGLRAFYEKYGFKGLARALQ----- 293 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 + P L ++ A D + +D + Sbjct: 294 ---DPAPPALPLSGATGDLFA-----DPAADVPVPVPGHGADPPAS-------------- 331 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 Q+P+ Y I+N +D +QW+Q+L+ + TD++D ++ + I++S Sbjct: 332 --AARQHPVQ---YESILNWQDFEQWLQRLQQADLVALDTETDSLDEMRAQIVGISLSVQ 386 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 +I L H+ D+ + + ++L+ LK + E+ K+G +IKYD+ Sbjct: 387 PGA--------AAYIPLQ-HSGPDAPAQLPI-GQVLARLKPWLEDGRRHKLGQHIKYDRH 436 Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQ-----KWLSYTRKEILKSRKSSI 528 V +GI ++G+ D ML SYVL+ H++ S+A+ K +SY +++ + Sbjct: 437 VFANHGIEVQGYVHDTMLQSYVLEV-HKPHNLGSLAERHTGRKGISY--EDLCGKGAHQL 493 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITG 587 P ++ + ++ E++++ L + L P+L ++L +YE L+ + + ++E G Sbjct: 494 PFAQVPVDKAAAYSCEDADLTLNVHQTLWPQLQAHDRLRFIYE-LEIASSEALYRIERNG 552 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + ID L Q S E+ + + L+ + Y L+G+ FNLSSPKQLG+I F KL P KT T Sbjct: 553 VLIDAPTLAQQSHELGQRIEQLQADAYALAGQPFNLSSPKQLGEIFFDKLGMPVVKKTAT 612 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + LE++ + P+ +LE R L K+K TY D L RT RVHT Y+ A Sbjct: 613 GARSTDEEVLEKL-AENYPLPAKLLEHRGLIKLKGTYTDKLTQLALPRTGRVHTHYAQAV 671 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 +TGRL+S +PNLQNIPI+T G+++R AF++P + SADYSQIELRI+AH++ L Sbjct: 672 AVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGCVIASADYSQIELRIMAHLSDDQAL 731 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F LD+HR AAE+FGV +++VS + RR+AK INF +IYG+ F LA L + Sbjct: 732 LHAFHAGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMGSFGLAKNLGLENKA 791 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 AA YI RYF R+PG+ +Y+++T+ + NGYVET+FGRR++ EINSP R+ ER+A Sbjct: 792 AAAYIDRYFQRYPGVKQYMDQTRAAAKSNGYVETVFGRRLYLPEINSPNGPRRSGAERSA 851 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AAD+ + AM++V K L+ + A +M++Q+HDELVFE+P + + Sbjct: 852 INAPMQGTAADLIKMAMVAVQKELDAQQPAIRMIMQVHDELVFELPGNAVDWLRTHVPRL 911 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976 M + L+VPL + V NW++ + Sbjct: 912 MAEVA----TLKVPLLAEVGVGPNWEQAH 936 >gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430] gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430] gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158] Length = 891 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 349/947 (36%), Positives = 528/947 (55%), Gaps = 72/947 (7%) Query: 40 GFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR 99 G NML LL + SH AV+FD TFR+E++ +YK++RP +P+ L Q+ + Sbjct: 3 GVLNMLRSLLLQYKP----SHVAVVFDAKGKTFRDELFEEYKSHRPPMPDDLRAQIEPLH 58 Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159 +A G+P + I G EADD+I T AEK G AV I + DKD+ QLV+P L +T+ Sbjct: 59 KMVKAMGLPLLAIPGVEADDVIGTLALEAEKAGRAVLISTGDKDMAQLVTPDITLINTMN 118 Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219 + + V++K+GIPP M+ AL GDS DNIPG+ G+G KTA LLQ G +++I Sbjct: 119 NAILGPDEVVEKYGIPPSLMIDFLALMGDSSDNIPGVAGVGEKTAQALLQGLGGVKDIYA 178 Query: 220 NASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273 N ++ K + + E A LS +L ++TDV + + + L +E L+ Sbjct: 179 NLDKVATLTFRGAKTMAAKLEQNKEMALLSYQLATIKTDVELELNSDQLTVEQPAVEELL 238 Query: 274 SFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333 + K EF + I + D ++ NKG T + ++ Sbjct: 239 ALFKHYEFKRWITDLE-----DGKWLQ---------GNKG-----------NPSTKKVAA 273 Query: 334 LSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFK 393 + D+ + + +++D Y I++ + W++KL+ +F Sbjct: 274 VQDEPAVAEAASV----------------LSSDGYVTILDEETFTSWLKKLQHSELFAFD 317 Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453 + TD++D + I I+ +T + V ++D + ++L+ L Sbjct: 318 LETDSLDTLSANIIGISFATA-PGEAAYLPVAHDYLDAPEQLDR---------SDVLARL 367 Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW 512 K E+ K+G N+K+D+ VL RY I + G D ML SY L+S HD+ ++A +W Sbjct: 368 KPLLEDPQSQKVGQNLKFDRGVLKRYDIELLGIRFDTMLESYALNSVAGRHDMDTLASRW 427 Query: 513 LSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHV 568 L + T +EI K+ + ++I+ Q +A E+++V LQL L + P+L E+ +V Sbjct: 428 LQHKTVTFEEIAGKGKNQLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELEKEQGPKNV 487 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 +E+++ P++ V+S++E G+ IDQ +L S E+ L LE ++L+GE FNLSSPKQ Sbjct: 488 FEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGSRLAELELKAHELAGEPFNLSSPKQ 547 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 L ILF K KT G T+ + L ++ D P+ K ILE R L+K+KSTY D L Sbjct: 548 LQTILFEKQGIKPTKKTPGGAPSTSEEVLAELAL-DYPLPKVILEHRGLAKLKSTYTDKL 606 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748 P IN + RVHT Y T TGRL+S +PNLQNIP++ D G++IR+AFI+P ++++A Sbjct: 607 PLMINPHSGRVHTSYHQTVTATGRLSSSDPNLQNIPVRNDEGRRIRQAFIAPQGHRILAA 666 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELRI+AH+++ L F + DIHR AAE+FGV ++KVS + RR AK INF + Sbjct: 667 DYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINFGL 726 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 IYG+S F L+ QL I EA Y+ YF R+PG+ +Y+E T+ Q GYV T+ GRR++ Sbjct: 727 IYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLY 786 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDE 927 +IN+ + R ERAAINAP+QG+AADI +RAMI+V LE KM++Q+HDE Sbjct: 787 LPDINASNAMRRKAAERAAINAPMQGTAADIIKRAMIAVDSWLEQQPSPEVKMIMQVHDE 846 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LVFEV + + A I ME + + L VPL+V+I V +NW + Sbjct: 847 LVFEVQADAVEAACAQIRALMEGS----MKLDVPLRVDIGVGDNWDQ 889 >gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c] gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c] Length = 923 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 352/980 (35%), Positives = 533/980 (54%), Gaps = 70/980 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P LS G P A+ G NML L+ + A + D Sbjct: 4 LVLIDGSSYLYRAFHALPPLSNAA-GEPTGALFGVVNMLRTTLKER-----PDYAAFVID 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+ + +YK +RP +P+ L Q+ + QA GI + I G EADD+I T Sbjct: 58 APGKTFRDALDSEYKMHRPPMPDDLRVQVEPMCGIVQALGIDILCIDGVEADDVIGTLAL 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-IEHVIKKWGIPPEKMVCLQAL 185 A +G AVTI + DKD QLV P L +T+ ++D VI K+G+ P++++ AL Sbjct: 118 AAVADGIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLAL 177 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GD++DN+PG+ G KTAA L EYG+L+ ++ NA +IK K +N+ L+R Sbjct: 178 MGDAVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKGKIG-DNLRVVLPRLLLNRA 236 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 L+ ++TDV + + L L + + L F + FT+ + + D ++ V + Sbjct: 237 LITIKTDVVLEKCPQDLALRERDTEALRGFYQRYGFTQALK------ELDGGSVAVTVAE 290 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 + D ++ + S + Sbjct: 291 QEPGRGRNAGFHVAPDASVAMEINPALSAPGE---------------------------- 322 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 Y I + +Q W+ +L G + TD++D + I + SF E Sbjct: 323 --YETIFTVEQLQDWIVRLRVAGQFALDTETDSLDPMQAVLIGL-----------SFAAE 369 Query: 426 TIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 + + D G L+ L+ E+ K+G + KYD VL RYGI + Sbjct: 370 -VGCAAYLPFGHDYPGAPVQLDRGQALALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVL 428 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY-TRK--EILKSRKSSIPIDKISDSQVQ 539 G+ +D +L S+VL SG + HD+ ++A++ L Y T K +++ IP + + Sbjct: 429 AGYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPFSHVGVQEAT 488 Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +A E++++ L+L +L PKL+ E L VY ++ P++ V+ ++E G+QID + L + Sbjct: 489 RYAAEDADITLRLHCVLAPKLLAEPSLERVYREIEMPLVAVLERIEANGVQIDAEELYKQ 548 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 SA++S+ ++ ++ DL+G FNL SPKQL +LF +LK P KT GQ T + LE Sbjct: 549 SADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEALE 608 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 I + + + ILE+R L+K+++TY + LP I+ T RVHT Y A TGRL+S +P Sbjct: 609 AI-VDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAATGRLSSSDP 667 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+TD G++IRRAF++P +KLI+ DYSQIELRI+AH++ L FE+ +D+H Sbjct: 668 NLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVH 727 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 +AAE+FG I++V+ RR AK INF +IYG+S F LA QL I R EA DYI YF R Sbjct: 728 CAIAAEVFGRGIDEVTLNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDR 787 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 F G+ +++E T+ R GYVET+FGRR++ + I S + R ERAAINAP+QG+AAD Sbjct: 788 FAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAAD 847 Query: 899 ITRRAMISVHK--SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 I +RAM++V + H+ M+LQ+HDELVFE E + T +VH + Sbjct: 848 IIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPT----LVHEVSARMAAAA 903 Query: 957 NLRVPLKVNIKVSNNWQEEN 976 LRVPL V++ V ++W E + Sbjct: 904 QLRVPLVVDVGVGHHWDEAH 923 >gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii SDF] gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii] Length = 923 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 353/973 (36%), Positives = 546/973 (56%), Gaps = 60/973 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS F++RA++A P L+ GL NAI G + + KL++ + +H AVIFD Sbjct: 4 FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQP----THMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T Sbjct: 59 TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A KEG V I + DKD+ QLV+ L D+ K+ + + V +K+G+ P +++ L Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLGTDGVFEKFGVWPNQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G KTAA LL EYG L+NI+ N ++K K +NI + + +L +L Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + D+P+ + L L D N L + LEF + + + ++++ + Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + ++ E+ TI+T +SL+ Q ++ + L E +L Q N D Sbjct: 292 --QQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 + ++T+ + E +G F I D DA++ P+A Q+ D Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDR------ 397 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 +++L+ +K ENE KIGH++KYD + +GI ++G Sbjct: 398 --------------------EQVLAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKGW 437 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 + D ML SYVL++ + H + +A+ +LS+ T ++I ++I +A Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V +L+ +L KL +L ++ ++ P+ ++S ME GI++D L ++S E Sbjct: 498 AEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 +K + LE +++GE FN++SPKQ+G+ILF KL G KT TGQ+ T+ LE+I Sbjct: 558 FAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 ++P+ + ILE R L+K+KSTY D L + T RVHT Y A T TGRL+S +PNLQ Sbjct: 617 --EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+ +G++IR+AFI+P + L++ADYSQIELR++AH ++ L F++ D+HR Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G+ IE V+ RR AK +NF ++YG+S F L QL R E+ +YIK+YF R+PG Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRYPG 794 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I+EY+++T+ + G+VETI GRR++ +I++ +R ERAAINAP+QGSAADI + Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI V K L K K+LLQ+HDELVFEV S+ I M+ + + VP Sbjct: 855 LAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEISVP 908 Query: 962 LKVNIKVSNNWQE 974 L V + NNW + Sbjct: 909 LVVEVGQGNNWDD 921 >gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327] Length = 884 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 341/927 (36%), Positives = 524/927 (56%), Gaps = 67/927 (7%) Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H AV+FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EAD Sbjct: 12 THAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEAD 71 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+I T AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE Sbjct: 72 DVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPEL 131 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRREN 232 ++ AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K Sbjct: 132 IIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAK 191 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 + + E A LS +L ++TDV + + E L ++ L+ K EF + V Sbjct: 192 LEQNKEVAYLSYQLATIKTDVELELTCEQLEVQPPAAEELLGLFKKYEFKRWTADVEAGK 251 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 A +P Q +S++D+ ++ + Sbjct: 252 WLQAKGAKPAA------------------------RPQETSVADEAPEVTATV------- 280 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 I+ D+Y I++ + +++W+ KLE +F TD++D + + ++ + Sbjct: 281 ----------ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA 330 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 ++ V ++D S++ L LK E+E LK+G N+KYD Sbjct: 331 -IEPGVAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYD 380 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528 + +L YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + Sbjct: 381 RGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQL 440 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITG 587 ++I+ + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G Sbjct: 441 TFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNG 500 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 ++ID +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT Sbjct: 501 VKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPG 560 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T+ + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A Sbjct: 561 GAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV 619 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L Sbjct: 620 TATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL 679 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR E Sbjct: 680 LTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKE 739 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A Y+ YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAA Sbjct: 740 AQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAA 799 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H Sbjct: 800 INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQ 858 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 + + C L VPL V + NW + Sbjct: 859 LMENC---TRLDVPLLVEVGSGENWDQ 882 >gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51] gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51] Length = 915 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 349/984 (35%), Positives = 534/984 (54%), Gaps = 92/984 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G+P A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ ++ +YKANRP +P+ L Q+ + + +A G P + ++G EADD+I T Sbjct: 61 AKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + G V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA LL Y NL + A R K + E+ + Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLGKVPALAIR-GAKTLPAKLEEHRD 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ + +E L+ + + L++ +EF + Sbjct: 240 AAFLSYELATIKVDVPLDVEVEALVCGEPDRDALLALYTEMEFKSWV------------- 286 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 ++ R+ + +++ +K+ + Sbjct: 287 -------------------ADVQREAARVGDDVAPVAEPVAKVEPK-------------- 313 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 Y I++ W++KL +F T +DA ++ + ++ + Sbjct: 314 ---------YETILDQTRFDAWLEKLRQAPLFAFDTETTGLDAQKAQLVGLSFAVAPH-- 362 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E ++ L+ H + + + L ++ +L LK E+ K+G N KYD +L Sbjct: 363 ------EAAYVPLA-HDYEGAPAQ--LDRDAVLLALKPLLEDPAKAKVGQNAKYDINILA 413 Query: 478 RY--GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 I+MRG D ML SYVL+S + HD+ S+AQK+L +T ++I + + Sbjct: 414 NGSPAIAMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFN 473 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQI 590 +I + +A E++++ L+L L+ +L L V ++ P++ V++++E G + Sbjct: 474 QIDLDKAGPYAAEDADITLRLHHALQARLAQTPSLQPVLMDIEMPLVPVLAKIERQGALV 533 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D LL S E+ + + LE Y+L+GE+FNL SPKQLG IL+ KL P +KT GQ Sbjct: 534 DAALLHVQSGELGEKMAELERRAYELAGEEFNLGSPKQLGAILYDKLGMPVLSKTAKGQP 593 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T L+++ P+ + ++++R LSK+KSTY D LP IN RT R+HT Y A T Sbjct: 594 STAEAVLDELAELGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAAT 653 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIPI+T G++IR+AFI+ P KL++ADYSQIELRI+AH+AK L Sbjct: 654 GRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHA 713 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F N LD+HR AAE+FGV +E V+ RR AK INF +IYG+S F LA Q+ + R ++ D Sbjct: 714 FRNDLDVHRATAAEVFGVALENVTVDQRRKAKAINFGLIYGMSAFGLAKQIGVDRKQSQD 773 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI RYF R+PG+ Y+E+T+ + G+VET+FGRR++ +IN+ ++R ER AINA Sbjct: 774 YIDRYFARYPGVLAYMERTRTQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINA 833 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AADI +RAM++V L + L +++LQ+HDELV EV E+ + I M K Sbjct: 834 PMQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVEQVKDEIRQHMSK 893 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V + NW E Sbjct: 894 AA----QLDVPLLVEAGIGANWDE 913 >gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP] gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP] Length = 962 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 361/996 (36%), Positives = 545/996 (54%), Gaps = 66/996 (6%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+ L+ G P A+ G NML L+ SH AV Sbjct: 6 QNPLVLVDGSSYLYRAFHVFNYLTNS-GGEPTGAMYGVLNMLRSLVNQVNP----SHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR++++ YK++RP +P+ L Q+ + +A GIP I I+G EADD+I T Sbjct: 61 VFDAKGKTFRDDLFEQYKSHRPPMPDELRAQIQPLHNIIRALGIPLISIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A ++G V I + DKD+ QLV+ L +T+ + +D E VI+K+GIPPE ++ Sbjct: 121 LAVQAAQDGKEVLISTGDKDMAQLVNQHIMLINTMNDSLLDREGVIEKYGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+ GIG KTA LLQ G+L+ I N R+ K ++ Sbjct: 181 ALQGDASDNIPGVKGIGEKTALALLQGIGSLQTIYANLDRVATLSVRGAKTLATKLVAEK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS L ++TDV + + L LI+ + EF + +N V Sbjct: 241 QAADLSYLLATIKTDVALDMTHHQLTPSAQRREELIALFERYEFKRWLNDVMN------- 293 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +I P++ +++ + K T ++ T ++ Q + P K K Sbjct: 294 DINPILKNVSDNDKK-----TTLNHSTDLQAVQNTVFD----------VPNK-------K 331 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ I+ Y I + +W+ K+E + TD +DA + + I+ S + + Sbjct: 332 IATVKIDRSQYQTITTELQLTEWMAKIEQAKLVAVDTETDNVDAMSAHLVGISFSLSNGE 391 Query: 418 -------DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE------ILSYLKKFFENEHFLK 464 V+ DL T D+ + L L+ LK EN K Sbjct: 392 ACYIPLAHTQQISVQPQQEDLFAETDNDAITQFQLASNQLNLTACLAQLKPLLENVEIKK 451 Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KE 519 +G NIKYD V +GI ++G D ML SY L+S GR H++ +A+++L + ++ Sbjct: 452 VGQNIKYDLTVFANHGIELQGVAFDTMLESYTLNSTGR--HNMDELAERYLDHKTIAFED 509 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMID 578 I K+ + DKI+ E+A E++++ ++L L L L+ ++ ++ P+++ Sbjct: 510 IAGKGKNQLTFDKIAIETATEYAAEDADITMKLHQQLITSLAKTPSLIKLFNEIEMPLVN 569 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V++++E G+ ID D L S E+ + L +E ++ +G+ FNL+S KQL +ILF KL Sbjct: 570 VLARVEQNGVLIDSDKLLAQSKEMEQRLAEVEIAVHTAAGQAFNLASTKQLQEILFEKLA 629 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P KT G T + LEQ+ + + K + E R LSK+KSTY D LP IN+ T R Sbjct: 630 LPVLKKTPKGAPSTNEEVLEQLAQQGHLVPKLLSEHRALSKLKSTYTDKLPKMINQHTGR 689 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT Y A T TGRL+S +PNLQNIPI+T+ G++IR+AFI+ K+++ADYSQIELRI+ Sbjct: 690 VHTSYHQAVTTTGRLSSSDPNLQNIPIRTEAGRRIRQAFIARDGYKIVAADYSQIELRIM 749 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH+A + F N DIH+ AAEIFG+++ +V+ + RR AK INF +IYG+S F LA Sbjct: 750 AHLANDEGMITAFANGQDIHQATAAEIFGLSLAEVTSEQRRSAKAINFGLIYGMSDFGLA 809 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL I R EA +Y+ RYF R+P + +++ + GYVET+FGRR++ EI S + Sbjct: 810 NQLAISRDEAKEYMARYFQRYPNVQQFMRDIRESASVKGYVETLFGRRLYLPEIKSNNAI 869 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 R ER AINAP+QG+AADI + AMIS+ K + + KM++Q+HDEL+FEV +E I Sbjct: 870 RRKAAERLAINAPMQGTAADIIKIAMISIDKQIRADQ-NIKMIMQVHDELIFEVKQECIE 928 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + +I MEKA I ++VPL + V NW E Sbjct: 929 YYTGLIKTEMEKA----IAMKVPLIAEVGVGANWDE 960 >gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101] gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101] Length = 949 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 352/998 (35%), Positives = 556/998 (55%), Gaps = 75/998 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFL+D + I+R +YA P ++ K G+ +AI GF N L +++ + + Sbjct: 1 MSTQKRLFLLDAYALIFRGYYAFIKNPRINSK--GMDTSAIMGFMNSLLDVIKREKPD-- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 H AV FD R E++ +YKANR + PE + +P ++ +A IP IE+ G EA Sbjct: 57 --HLAVAFDKEGSRARTEMFAEYKANRDETPEAIKIAVPYIQELLKAMHIPIIELAGCEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175 DD+I T AEK+ + V +++ DKD QLVS +Y + + + I+ WG+P Sbjct: 115 DDLIGTIAKQAEKQNYKVYMVTPDKDFAQLVSENIFMYKPAR-----MGNGIEIWGVPEV 169 Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 PE+++ + GD++DNIPG+PG+G TA L+E+G++EN+L N ++K Sbjct: 170 LAKFEVERPEQVIDFLGMMGDAVDNIPGLPGVGEVTAKKFLKEFGSMENLLANTDKLK-G 228 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 K +ENI + LS+KL + D + + L + + + + LEF ++ + Sbjct: 229 KMKENIEANKDKGILSKKLAAIMCDCDVVFNEDDYELSRPDIEKTDAIFQELEFRRMAEQ 288 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKT-SQFSSLSDQTSKIN-SEQ 345 + A + A + ++ + K QF + ++ + + Sbjct: 289 FDNLFKVGAG----------SESGSTPAQDAKLYKKPQPKNEDQFDLFGGGGTTLDENAE 338 Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405 + F L+ SY + I+ +Q L+ S F T +DA H++ Sbjct: 339 AARNSFYNTLENTEH------SYQTVQGDLGIKLLLQNLQKQTSVCFDTETTGIDALHAE 392 Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465 + ++ S K +F V SQ+ K ++ FFENE+ KI Sbjct: 393 LVGMSFSYEKGK---AFYV-------PFPESQEEA------KVLIDKFVPFFENENIEKI 436 Query: 466 GHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---- 520 G N+KYD +L YG++++G D M+ Y+++ H++ +A+ +L Y+ K I Sbjct: 437 GQNLKYDLKILSNYGVTVKGKLFDTMIAHYLINPDMR-HNMDILAETYLKYSPKSIETLI 495 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 K K+ + + + ++E+A E+++V LQL + +L + +++ ++ P++ V+ Sbjct: 496 GKKGKNQLSMRDVPLEDIKEYAAEDADVTLQLKEIFTAELEKTETKKLFDEIEIPLVSVL 555 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 + ME GI++D + LKQ+S E+ + SLEE IY+ +GEKFNL+SPKQLGDILF KLK Sbjct: 556 ADMETEGIRLDVEFLKQMSKEMDVEIKSLEEQIYETAGEKFNLASPKQLGDILFDKLKI- 614 Query: 641 SGAK---TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 GAK TKTGQ+ T + L + DNPI+K IL+WRQ+ K++STY +LP ++K+T Sbjct: 615 GGAKQKKTKTGQYATGEEVLTYL-ANDNPIVKQILDWRQMVKLQSTYILALPEQVDKKTL 673 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELR 756 RVHT Y TGRL+S PNLQNIPI+T+ G++IR+AF++ LISADYSQIELR Sbjct: 674 RVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQIRKAFVARDENYTLISADYSQIELR 733 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 I+A ++ + F+N DIHR AA++F V +E+VS + R +AKT+NF IIYG+S F Sbjct: 734 IIAALSGEENMIAAFQNGEDIHRATAAKVFDVALEEVSREQRSNAKTVNFGIIYGVSAFG 793 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ Q + RSE+A I Y+ +P + YI + +F R+ GYV+TI GRR + +INS Sbjct: 794 LSNQTSLSRSESAALIDAYYKTYPRLKSYISEQVDFAREKGYVQTILGRRRYLKDINSAN 853 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 + +R+ ER A+NAPIQGSAAD+ + AMI++HK L + +KMLLQ+HDELVF+V +E Sbjct: 854 AVVRSAAERNAVNAPIQGSAADVIKIAMINIHKKLREENWKSKMLLQVHDELVFDVHNDE 913 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + +I H ME A + VPL+V + + +W E Sbjct: 914 LEKIQPMIKHEMENA----FKMSVPLEVELGLGKDWLE 947 >gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU] gi|332873987|ref|ZP_08441922.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059] gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Acinetobacter baumannii ACICU] gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2] gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715] gi|332737728|gb|EGJ68620.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6014059] Length = 923 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 353/973 (36%), Positives = 546/973 (56%), Gaps = 60/973 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS F++RA++A P L+ GL NAI G + + KL++ + +H AVIFD Sbjct: 4 FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQ----PTHMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T Sbjct: 59 TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A KEG V I + DKD+ QLV+ L D+ K+ +D + V +K+G+ P +++ L Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G KTAA LL EYG L+NI+ N ++K K +NI + + +L +L Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + D+P+ + L L D N L + LEF + + + ++++ + Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + ++ E+ TI+T +SL+ Q ++ + L E +L Q N D Sbjct: 292 --QQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 + ++T+ + E +G F I D DA++ P+A Q+ D Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDR------ 397 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 +++L+ +K ENE KIGH++KYD + +GI ++G Sbjct: 398 --------------------EQVLAQIKPILENEAVKKIGHHLKYDAHIFANHGIELKGW 437 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 + D ML SYVL++ + H + +A+ +LS+ T ++I ++I +A Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V +L+ +L KL +L ++ ++ P+ ++S ME GI++D L ++S E Sbjct: 498 AEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 +K + LE +++GE FN++SPKQ+G+ILF KL G KT TGQ+ T+ LE+I Sbjct: 558 FAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 ++P+ + ILE R L+K+KSTY D L + T RVHT Y A T TGRL+S +PNLQ Sbjct: 617 --EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+ +G++IR+AFI+P + L++ADYSQIELR++AH ++ L F++ D+HR Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G+ IE V+ RR AK +NF ++YG+S F L QL R E+ +YIK+YF R+PG Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRYPG 794 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I+EY+++T+ + G+VETI GRR++ +I++ +R ERAAINAP+QGSAADI + Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI V K L K K+LLQ+HDELVFEV S+ I M+ + + VP Sbjct: 855 LAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEISVP 908 Query: 962 LKVNIKVSNNWQE 974 L V + NW + Sbjct: 909 LVVEVGQGKNWDD 921 >gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp] gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp] Length = 931 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 358/983 (36%), Positives = 542/983 (55%), Gaps = 74/983 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G+P A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ +YKANRP +P+ L Q+ + + +A G+P + ++G EADD+I T Sbjct: 61 AKGGTFRDELFAEYKANRPSMPDELRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + V I + DKD+ QLV P L +T+ D V +K+G+ PE ++ AL Sbjct: 121 QAAAQQRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDEGGVKEKFGVGPELIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA LL Y NL+ + R K + E+ E Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLVGVGGGLDVLYANLDKVPELPIR-GAKSLPAKLEEHRE 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++TDVP+ I ++ L + + L+ LEF ++ + AA Sbjct: 240 MAYLSYQLATIKTDVPLNIEIDSLHPGEPDQATLVQLYGELEFKAWLDELLRQNKALAAK 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 D+ E G A E + +TP Sbjct: 300 AAVPAGDL-FAEPAGPAAE------------------------ETAETP----------- 323 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 P+ Y ++ W++KL+ +F T ++DA ++ + ++ + + + Sbjct: 324 ---PMGAGDYELVLEQAQFDAWLKKLQQAELIAFDSETTSIDAQQAQLVGLSFA-VKAGE 379 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 + ++ + +D+ +L LK E+ K+G + KYD VL Sbjct: 380 AAYVPLAHSYMGVPQQLDRDA---------VLKALKPILEDPAKAKVGQHAKYDINVLAN 430 Query: 479 YG--ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT--RKEILKSRKS-SIPIDK 532 I+++G D ML SYVLDS + HD+ S+A K+L ++ R E + R + + D+ Sbjct: 431 ASTPIAVQGVAFDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGRGAKQLTFDQ 490 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 I+ Q +A E+++V L+L L +L V L V ++ P++ V++++E G +D Sbjct: 491 IALEQAGPYAAEDADVTLRLHQELWGRLEAVPSLAKVLREIEIPLVPVLARIERNGALVD 550 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 LL + S E+ + L+ LE ++++GE+FNL+SPKQLG IL+ KL +P +KT GQ Sbjct: 551 AKLLGEQSVELGEKLVELERKAFEIAGEEFNLASPKQLGVILYEKLGYPVISKTAKGQPS 610 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T L ++ D + K ++++R LSK+KSTY D LP IN RT R+HT Y A TG Sbjct: 611 TAEAVLAELAEQDFELPKVLMQYRSLSKLKSTYTDKLPEQINPRTGRIHTSYHQAVAATG 670 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+T G++IR+AF++P K+++ADYSQIELRI+AH+AK L F Sbjct: 671 RLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKMMAADYSQIELRIMAHLAKDEGLLDAF 730 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + LD+H+ AAE+FGV +E+V+ RR AK INF +IYG+S F LA Q+ + R EA Y Sbjct: 731 RHDLDVHKATAAEVFGVALEEVTSDQRRKAKAINFGLIYGMSAFGLAKQIDVERKEAQAY 790 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I RYF R+PG+ Y+E+T+ + GYVET+FGRR++ EI++ ++R ERAAINAP Sbjct: 791 IDRYFARYPGVLSYMERTRAQAAEQGYVETVFGRRLYLPEIHAQNQAMRKGAERAAINAP 850 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG+AADI +RAMI+V L+ + +++LQ+HDELV EV E+ + + M A Sbjct: 851 MQGTAADIIKRAMIAVDDWLQGSGIDARIILQVHDELVLEVREDLLEEVGAQLKALMGGA 910 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL V + V NW E Sbjct: 911 A----QLDVPLLVEVGVGANWDE 929 >gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1] gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1] Length = 915 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 347/984 (35%), Positives = 536/984 (54%), Gaps = 92/984 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G+P A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSLFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ ++ +YKANRP +P+ L Q+ + + +A G P + ++G EADD+I T Sbjct: 61 AKGGTFRDAMFAEYKANRPSMPDDLRVQVEPLHASVKALGYPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A +G V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SAAAKGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA LL Y NL+ + A R K + E+ + Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIR-GAKTLPAKLEEHRD 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ + ++ L+ + + L + +EF + Sbjct: 240 AAFLSYELATIKVDVPLDVEVDALVCGEPDREALQALYTEMEFKSWV------------- 286 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E+ R+ ++ + + + +K+ Sbjct: 287 -------------------AEVQREAARAGNEVAPVEEPAAKVEP--------------- 312 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 +Y I++ + W+ KL +F T +DA ++ + ++ + Sbjct: 313 --------TYETILDQARFEAWLDKLRQAPLFAFDTETTGLDAQKAQLVGLSFAVAPH-- 362 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E ++ L+ H + + + L ++ +L LK E+ K+G N KYD +L Sbjct: 363 ------EAAYVPLA-HDYEGAPAQ--LDRDAVLLALKPLLEDPAKAKVGQNAKYDINILA 413 Query: 478 RY--GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 I MRG D ML SYVL+S + HD+ S+AQK+L +T ++I + + Sbjct: 414 NGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFN 473 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQI 590 +I+ + +A E++++ L+L L+ +L + V ++ P++ V++++E G + Sbjct: 474 QINLDKAGPYAAEDADITLRLHQALQARLAQTPSVQPVLMDIEMPLVPVLAKIERQGALV 533 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D LL S E+ + LE+ Y+L+GE+FNL SPKQLG IL+ KL P +KT GQ Sbjct: 534 DAALLHVQSGELGVKMGELEQRAYELAGEEFNLGSPKQLGAILYDKLGMPVLSKTAKGQP 593 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T L+++ P+ + ++++R LSK+KSTY D LP IN RT R+HT Y A T Sbjct: 594 STAEAVLDELALLGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAVAAT 653 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIPI+T G++IR+AFI+ P KL++ADYSQIELRI+AH+AK L Sbjct: 654 GRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHA 713 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F N LD+HR AAE+FGV ++ V+ RR AK INF +IYG+S F LA Q+ + R ++ D Sbjct: 714 FRNDLDVHRATAAEVFGVALQDVTTDQRRKAKAINFGLIYGMSAFGLAKQIGVDRKQSQD 773 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI RYF R+PG+ Y+E+T+ + G+VET+FGRR++ +IN+ ++R ER AINA Sbjct: 774 YIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINA 833 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AADI +RAM++V L + L +++LQ+HDELV EV E+ + I M + Sbjct: 834 PMQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQHMSQ 893 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V + NW E Sbjct: 894 AA----QLDVPLLVEAGIGANWDE 913 >gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] Length = 923 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 353/973 (36%), Positives = 546/973 (56%), Gaps = 60/973 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS F++RA++A P L+ GL NAI G + + KL++ + +H AVIFD Sbjct: 4 FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQP----THMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T Sbjct: 59 TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A KEG V I + DKD+ QLV+ L D+ K+ +D + V +K+G+ P +++ L Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G KTAA LL EYG L+NI+ N ++K K +NI + + +L +L Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + D+P+ + L L D N L + LEF + + + ++++ + Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVEALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + ++ E+ TI+T +SL+ Q ++ + L E +L Q N D Sbjct: 292 --QQASQTVVQNEVKPAETIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 + ++T+ + E +G F I D DA++ P+A Q+ D Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDR------ 397 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 ++IL+ +K ENE KIGH++KYD + +GI ++G Sbjct: 398 --------------------EQILAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKGW 437 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 + D ML SYVL++ + H + +A+ +LS+ T ++I ++I +A Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V +L+ +L KL +L ++ ++ P+ ++S ME GI++D L ++S E Sbjct: 498 AEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 +K + LE +++ E FN++SPKQ+G+ILF KL G KT TGQ+ T+ LE+I Sbjct: 558 FAKTMEGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 ++P+ + ILE R L+K+KSTY D L + T RVHT Y A T TGRL+S +PNLQ Sbjct: 617 --EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+ +G++IR+AFI+P + L++ADYSQIELR++AH ++ L F++ D+HR Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G+ IE V+ RR AK +NF ++YG+S F L QL R E+ +YIK+YF R+PG Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRYPG 794 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I+EY+++T+ + G+VETI GRR++ +I++ +R ERAAINAP+QGSAADI + Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI+V K L K K+LLQ+HDELVFE + S+ I ME + + VP Sbjct: 855 LAMIAVDKILP--KDQAKLLLQVHDELVFEADQNIAEELSKQIASVMESV----VEISVP 908 Query: 962 LKVNIKVSNNWQE 974 L V + NW + Sbjct: 909 LVVEVGQGQNWDD 921 >gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus parainfluenzae T3T1] Length = 932 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 373/986 (37%), Positives = 547/986 (55%), Gaps = 78/986 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + I+G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLVIEGVEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A K V I + DKD+ QLV L +T+ +D + VI+K+GIPPE ++ A Sbjct: 122 AVAASKANQKVLISTGDKDMAQLVDDNIMLINTMNNTLLDRDAVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK + +L E Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLDKVAELPIRGAKKLGDKLLAEKE 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++TDV + I E L L N +L + EF + +N V D N Sbjct: 242 MADLSYRLATIKTDVALDITPEQLTLGASNNDQLTEYFGRYEFKRWLNEVMNGADSITNN 301 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERLQK 357 ++Q +KIN Q TP + Sbjct: 302 ------------------------------------NEQPTKINHYQATPALAQDNSDEA 325 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 L I+ Y ++ D+ +WV+KL+ + TD +D + + I+ + + Sbjct: 326 LPAIQIDRSRYETLLTEADLNRWVEKLKQAKLFALDTETDNLDYMAANLVGISFALENG- 384 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLV 475 E ++ L + D G TL K L+ LK EN K+G N KYD + Sbjct: 385 -------EAAYLPLQL----DYLGAPKTLEKTTALTLLKPILENPTIQKVGQNFKYDLTI 433 Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 R GI ++G D ML SYVL+S GR H++ +A+++L + + +EI K+ + Sbjct: 434 FARNGIDVQGVAFDTMLESYVLNSTGR--HNMDDLAKRYLGHQTISFEEIAGKGKNQLTF 491 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQ 589 ++I Q E+A E+++V ++L +L KL E L +++ ++ P++ V+S+ME G+ Sbjct: 492 NQIQLEQAAEYAAEDADVTMKLQQVLWEKLSKEPTLEKLFKEMELPLLGVLSRMERRGVL 551 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID D L S EI+ L LEE Y L+G+ FNL+S KQL +ILF KL P KT G Sbjct: 552 IDSDALFLQSNEIANRLSELEEQAYVLAGQPFNLASTKQLQEILFDKLGLPVIQKTPKGA 611 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + LE++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T Sbjct: 612 PSTNEEVLEEL-AFSHELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTA 670 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH+++ L Sbjct: 671 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLIN 730 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIHR AAEIFGV +++V+ + RR+AK INF +IYG+S F L+ QL I R++A Sbjct: 731 AFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLSIGRADAQ 790 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 Y+ YF R+PG+ ++ + + GYVET+FGRR++ +INS R ER AIN Sbjct: 791 SYMDLYFKRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPDINSSNGMRRKAAERVAIN 850 Query: 890 APIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 AP+QG+AADI +RAMI + + L+ D +A M++Q+HDELVFEV E++ S++I M Sbjct: 851 APMQGTAADIIKRAMIQLDQKLQNDPDIA--MIMQVHDELVFEVRSEKVEFYSKLIKTHM 908 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +L VPL V++ NW E Sbjct: 909 ESAA----DLVVPLIVDVGQGTNWDE 930 >gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058] gi|332856876|ref|ZP_08436285.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150] gi|332867222|ref|ZP_08437487.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113] gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] gi|332726930|gb|EGJ58435.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013150] gi|332734161|gb|EGJ65293.1| DNA-directed DNA polymerase [Acinetobacter baumannii 6013113] Length = 923 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 353/973 (36%), Positives = 546/973 (56%), Gaps = 60/973 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS F++RA++A P L+ GL NAI G + + KL++ + +H AVIFD Sbjct: 4 FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQ----PTHMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T Sbjct: 59 TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A KEG V I + DKD+ QLV+ L D+ K+ +D + V +K+G+ P +++ L Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G KTAA LL EYG L+NI+ N ++K K +NI + + +L +L Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + D+P+ + L L D N L + LEF + + + ++++ + Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + ++ E+ TI+T +SL+ Q ++ + L E +L Q N D Sbjct: 292 --QQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 + ++T+ + E +G F I D DA++ P+A Q+ D Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDR------ 397 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 +++L+ +K ENE KIGH++KYD + +GI ++G Sbjct: 398 --------------------EQVLAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKGW 437 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 + D ML SYVL++ + H + +A+ +LS+ T ++I ++I +A Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V +L+ +L KL +L ++ ++ P+ ++S ME GI++D L ++S E Sbjct: 498 AEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 +K + LE +++GE FN++SPKQ+G+ILF KL G KT TGQ+ T+ LE+I Sbjct: 558 FAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 ++P+ + ILE R L+K+KSTY D L + T RVHT Y A T TGRL+S +PNLQ Sbjct: 617 --EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+ +G++IR+AFI+P + L++ADYSQIELR++AH ++ L F++ D+HR Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G+ IE V+ RR AK +NF ++YG+S F L QL R E+ +YIK+YF R+PG Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRYPG 794 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I+EY+++T+ + G+VETI GRR++ +I++ +R ERAAINAP+QGSAADI + Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI V K L K K+LLQ+HDELVFEV S+ I M+ + + VP Sbjct: 855 LAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEISVP 908 Query: 962 LKVNIKVSNNWQE 974 L V + NW + Sbjct: 909 LVVEVGQGKNWDD 921 >gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581] gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581] Length = 922 Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust. Identities = 350/980 (35%), Positives = 533/980 (54%), Gaps = 77/980 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS++YRAF+A P L+ +G P A+ G NML +LL K+ S AV+FD Sbjct: 6 IVLVDGSSYLYRAFHALPPLT-TSEGQPTGAVKGVLNMLKRLL----KDYPDSPMAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++Y +YKA RP +P+ L Q+ + +A G+P + ++G EADD+I T Sbjct: 61 APGKTFRDDLYAEYKAQRPPMPDDLRVQVEPLHDCVRALGLPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + G I + DKD+ QLV+ L +T+K+E +D V K+G+PP ++ AL Sbjct: 121 QAAEAGRDAVISTGDKDMAQLVNGHITLVNTMKDETLDTAGVEAKFGLPPSLIIDFLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIKQKKRR------ENILEYAET 239 GD +DNIPG+PG+G KTA LLQ G LE + + ++K R + + E E Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLQGMEGGLETVYADLEKVKTLSFRGAKTLPKKLEENREQ 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS +L ++TD + + L+ L + + L++ + LEF ++ + D Sbjct: 241 AFLSYELATIKTDCELPVGLDDLNIARPDREALLALYRRLEFKNWLSELLEGGD------ 294 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 +G+ D + SD N + Sbjct: 295 ------------EGV--------DDVAGGTATPEASDTADAGNGSGARHDVV-------- 326 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 I + +W+ +L + F + T ++ + + + ++ Sbjct: 327 -----------ITEQAVLDEWLARLADCEAFCFDLETTSLSYMEADIVGVGLAL------ 369 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 E +I L+ H D+ + + +L L + + KIG N+KYD VL R+ Sbjct: 370 --EPGEAAYIPLA-HDYLDAP-EQLDRQAVLEALAPLWADAGKAKIGQNLKYDISVLARH 425 Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISD 535 G + G D ML SYVLDS + HD+ S+A K+L + + ++I + ++I+ Sbjct: 426 GHEVAGPLHDTMLESYVLDSTATRHDMDSLALKYLGEKTVSFEDIAGKGAKQLTFNQIAL 485 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 Q +A E+ ++ L+L LRP++ + +L V + L++P++ V+S+ME G+ +D + Sbjct: 486 EQAAPYACEDVDITLRLHRELRPRVEGQGRLAEVLDNLERPLVRVLSRMERNGVALDPER 545 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L + S E+ + + LE+ ++L+G +FNL SPKQLG+ILF + K P KT G T Sbjct: 546 LHEQSRELGERIRELEQRAHELAGREFNLGSPKQLGEILFEEQKIPVIKKTPKGAPSTAE 605 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE++ D P+ K I+E R SK++STY D LP ++ T R+HT Y A T TGRL+ Sbjct: 606 AVLEELAL-DYPLPKVIMEHRGFSKLRSTYTDKLPKLVDPTTGRLHTSYHQAVTATGRLS 664 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIPI+T+ G++IR+AF++ P +L++ADYSQIELRI+AH++ L F Sbjct: 665 SSDPNLQNIPIRTEQGRRIRQAFVARPGYRLVAADYSQIELRIMAHLSGDKGLLDAFAQG 724 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH AAE+FGV ++KVS + RR AK INF +IYG+S + L QL I R++A YI R Sbjct: 725 RDIHAATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIERNQAQIYIDR 784 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF R+PG+ Y+E+ + ++GYVET+FGRR+H EI+S + R ER AINAP+QG Sbjct: 785 YFDRYPGVARYMERIRAQAAEDGYVETVFGRRLHLPEIHSQNRNRRQGAERTAINAPMQG 844 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AADI +RAMI V L D + M++Q+HDELVFEV E E+ + ME A Sbjct: 845 TAADIIKRAMIDVDGWLADGDIDAMMVMQVHDELVFEVAESEVDAFMDQVKTRMENAA-- 902 Query: 955 KINLRVPLKVNIKVSNNWQE 974 L V L V + NW E Sbjct: 903 --ELDVALTVEAESGANWDE 920 >gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057] gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056] gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059] gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057] Length = 923 Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust. Identities = 353/973 (36%), Positives = 546/973 (56%), Gaps = 60/973 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS F++RA++A P L+ GL NAI G + + KL++ + +H AVIFD Sbjct: 4 FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQ----PTHMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T Sbjct: 59 TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A KEG V I + DKD+ QLV+ L D+ K+ +D + V +K+G+ P +++ L Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G KTAA LL EYG L+NI+ N ++K K +NI + + +L +L Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + D+P+ + L L D N L + LEF + + + ++++ + Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + ++ E+ TI+T +SL+ Q ++ + L E +L Q N D Sbjct: 292 --QQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 + ++T+ + E +G F I D DA++ P+A Q+ D Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDR------ 397 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 +++L+ +K ENE KIGH++KYD + +GI ++G Sbjct: 398 --------------------EQVLAQIKPVLENEAVKKIGHHLKYDAHISANHGIELKGW 437 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 + D ML SYVL++ + H + +A+ +LS+ T ++I ++I +A Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V +L+ +L KL +L ++ ++ P+ ++S ME GI++D L ++S E Sbjct: 498 AEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 +K + LE +++GE FN++SPKQ+G+ILF KL G KT TGQ+ T+ LE+I Sbjct: 558 FAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 ++P+ + ILE R L+K+KSTY D L + T RVHT Y A T TGRL+S +PNLQ Sbjct: 617 --EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+ +G++IR+AFI+P + L++ADYSQIELR++AH ++ L F++ D+HR Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G+ IE V+ RR AK +NF ++YG+S F L QL R E+ +YIK+YF R+PG Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRYPG 794 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I+EY+++T+ + G+VETI GRR++ +I++ +R ERAAINAP+QGSAADI + Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI V K L K K+LLQ+HDELVFEV S+ I M+ + + VP Sbjct: 855 LAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEISVP 908 Query: 962 LKVNIKVSNNWQE 974 L V + NW + Sbjct: 909 LVVEVGQGKNWDD 921 >gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY] gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY] Length = 922 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 349/984 (35%), Positives = 528/984 (53%), Gaps = 70/984 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDGSS++YRAF+A P L R G P +A G + +LQ +KE A + Sbjct: 1 MTRPKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPASAPTGAIRGMINMLQALKKEVPADY 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A +FD TFR+ +YP+YK +R +P+ L Q+ + + G P + I G EADD+ Sbjct: 60 AACVFDASGPTFRDALYPEYKQHRAPMPDDLRAQIEPIHEVVRLLGWPVLCIPGVEADDV 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T A +G V I S DKDL QLV+ + DT+ +K D+ V ++G+PP MV Sbjct: 120 IGTLAATAAGQGMQVVISSGDKDLSQLVNEHITIIDTMNGKKRDVAGVTAEFGVPPTLMV 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 QAL GD++DN+PG+P +G KTAA L EYG+L+ +L NA IK EN+ + Sbjct: 180 DYQALVGDAVDNVPGVPKVGPKTAAKWLTEYGSLDALLANAGAIKGVAG-ENLRGALDWL 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +R LV ++TD + L+ L P + + E ++ Y Sbjct: 239 PTARTLVTIKTDCDLAGHLDGL-------PAIDAIAVGAEQADVLRDFYQKYGF------ 285 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 ++ A+ + + D F++ + ++Q Sbjct: 286 ---------KSLARALPSAVVPDAGASGDLFATPDASAVAVQAQQ--------------- 321 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 +Y I+ + + W+ +L+ A+ T ++D ++ + + Sbjct: 322 ---REVTYDTILTWEQLDGWLARLKAAPLAALDTETTSLDELRAEIVGV----------- 367 Query: 421 SFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 SF VE +I L+ H D+ + L E+L L+ + E+ K+G ++KYD+ V Sbjct: 368 SFSVEPGAAAYIPLA-HNGPDAPPQLPLA-EVLERLRPWLEDPACPKLGQHVKYDRHVFA 425 Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 +GI +RG+ D ML SYVL+ H + S+A++ T +++ IP ++ Sbjct: 426 NHGIQVRGYAHDTMLQSYVLEV-HKPHGLTSLAERHTGRTGISYEDLCGKGAKQIPFAQV 484 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + ++ E+S+ L + +L P+L + KL +YE L+ + + ++E G+ ID Sbjct: 485 PVDKAAAYSCEDSDQTLDVHRVLWPQLQADDKLRGIYE-LEMACSETLFRIERNGVLIDA 543 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L S + + +L LE+ Y ++G+ FNL SPKQLG+I F KL P KT TG T Sbjct: 544 GKLAAQSHALGQRILQLEQEAYAIAGQPFNLGSPKQLGEIFFDKLGMPVVKKTATGARST 603 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE++ D P+ +LE R L K+K TY D L + RT RVHT Y+ A +TGR Sbjct: 604 DEEVLEKL-AEDYPLPAKLLEHRSLCKLKGTYTDKLSTLADPRTGRVHTHYAQAVAVTGR 662 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S EPNLQNIPI+T G+++R AF++P + + SADYSQIELRI+AHI+ L F Sbjct: 663 LSSNEPNLQNIPIRTPEGRRVREAFVAPAGRVIASADYSQIELRIMAHISGDEALLHAFR 722 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 LD+HR AAE+FGV +++VS + RR+AK INF +IYG+S F LA L I AA YI Sbjct: 723 EGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYI 782 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 RYF R+PG+ +Y+E+TK + GYVET+FGRR++ EINSP R ERAAINAP+ Sbjct: 783 DRYFQRYPGVKQYMEETKAQAKARGYVETVFGRRLYLPEINSPNGPRRGAAERAAINAPM 842 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AAD+ ++AM++V L+ K M++Q+HDELVFE+PE E+ + I M Sbjct: 843 QGTAADLIKKAMVAVQGELDARKPEVLMIMQVHDELVFELPEGEVDWLRREIPRLMAGVA 902 Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976 L+VPL + V +W + + Sbjct: 903 ----ALQVPLLAEVGVGPDWDKAH 922 >gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999] Length = 931 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 354/983 (36%), Positives = 546/983 (55%), Gaps = 71/983 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E LVDGSS+++RAF+ P +S G +AI G NML LL+ +H AV Sbjct: 6 EAPFVLVDGSSYLFRAFHGMPPMSNSQ-GQATHAIYGVINMLKSLLKTYEP----THIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR++IYP+YKANRP +P+ L Q+ + +A G+P I EADD+I T Sbjct: 61 VFDAKGKTFRDDIYPEYKANRPPMPDELRSQIAPLHAIIKAMGLPLIVEPNVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 T A G + + DKD+ QLV L +T+ +D+ V++K+GI PE ++ Sbjct: 121 LTKRATALGMKSLVSTGDKDMAQLVDDHVTLINTMNNTLMDVPGVVEKFGIGPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G K+A LLQ G + +I N +I K + + E+ Sbjct: 181 ALKGDKVDNIPGVPGVGDKSALGLLQGIGGINDIYNNLDKIATLDFRGAKTMAKKMQEHE 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 ++ARLS +L + D+P+ + L ++D + L + EF + Sbjct: 241 QSARLSYELATIAIDLPLDYSPDQLSIKDADNNALAELFQTYEFKRWF------------ 288 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 TE+ DT K + ++ + SE TP K Sbjct: 289 --------------------TEVTGDTFAKAPHNKNNNNDSPV--SESTPANAVTSNTPK 326 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I++ Y ++ + QW++K + + F + T T A + + + IS Sbjct: 327 -----IDHTKYDVVLTEAALAQWIEKCSS--APLFGLQTFTSSAHYMEAQIVGISLCVAA 379 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 D + I L +H D+ + ++ L L +N K+GHN+K+DK VL Sbjct: 380 GDACY------IPL-LHDYPDAP-EQLNSQWALEQLTPLLKNSKNQKVGHNLKFDKNVLA 431 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 +GI++ G D ML SYVL+S + H I +++ +L + T + I + ++I Sbjct: 432 NHGITLNGVAYDTMLESYVLNSVVTKHHIEALSLHYLGHSPITLESIAGKGAKQLTFNQI 491 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 ++ A EN+++IL+L LL P+L+ +L +V L+ P+ V+S+ME TG+ ID Sbjct: 492 GLAEAAPFAAENADIILRLHQLLWPQLVNAPELANVVSELEVPLSQVLSRMEQTGVLIDS 551 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L Q S +++ +L LEE +++++GE FNL S KQL ILF K+ P KT G T Sbjct: 552 QKLAQQSQSLAERILHLEETVHEMAGEAFNLGSTKQLQHILFEKMNLPVIKKTPKGAPST 611 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ + P+ K I+E+R L+K+K+TY D LP I+ RT RVHT Y A T TGR Sbjct: 612 GEEVLQELAL-NYPLPKAIMEYRGLTKLKNTYTDKLPKLIDHRTGRVHTSYQQAITATGR 670 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+T+ G+K+R AFI+ P K+++ADYSQIELRI+AH++ + L F Sbjct: 671 LSSTDPNLQNIPIRTEEGRKVREAFIARPGYKIVAADYSQIELRIMAHLSSDSGLLHAFA 730 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 N LD+H+ A+E+FGV +E V+ + RR +K INF +IYG+S F LA QL IPR +A Y+ Sbjct: 731 NGLDVHKATASEVFGVALEHVTSEQRRSSKAINFGLIYGMSAFGLAKQLNIPRGDAQHYM 790 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ +Y++ T+ + GYV+T+FGRR++ EI S + R ERAAINAP+ Sbjct: 791 DTYFERYPGVLQYMQDTREEAKAQGYVKTVFGRRLYLPEITSSNGARRAGAERAAINAPM 850 Query: 893 QGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QG+AADI + +M++V ++ + M++Q+HDEL+FE+ E+++ S I+ ME A Sbjct: 851 QGTAADIIKLSMLAVDNWIQTQDQSDICMIMQVHDELIFEIKEQKVDAYSTKIIELMENA 910 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 ++L VPL V V NW++ Sbjct: 911 ----VSLAVPLTVEFDVGENWEQ 929 >gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205] gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205] Length = 921 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 356/971 (36%), Positives = 539/971 (55%), Gaps = 66/971 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 LVDGS F++RAF+A P L+ GL NAI G + + KL++ ++ +H AVIFD P Sbjct: 6 LVDGSYFLFRAFHALPPLTTS-TGLHTNAIRGAISAIQKLMRRTQP----THMAVIFDTP 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T T A Sbjct: 61 EPTFRHKLSPIYKGDRPSMPEELSEQIPYLHALIKALGIPLYSLPGAEADDIIGTLTKRA 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 EG V I + DKD+ QLV+P L D+ KE +D V++K+G+ P +++ L GD Sbjct: 121 LSEGHHVLISTGDKDMAQLVNPHVKLEDSFKERVLDEAGVLEKFGVHPHQIIDYLTLMGD 180 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248 + D I G+PG+G KTAA LL EYG+L NI+ N ++K K +NI + + ++ +L Sbjct: 181 ASDGIMGVPGVGAKTAAKLLTEYGSLNNIIANVDQLK-GKLSQNIKDNLDNIKIDHQLAS 239 Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINT 308 + D+ + + L L N +L LEF + + + + + I Sbjct: 240 IVCDLDLALDWHDLKLSQPNTEQLRHLYTELEFRNQLQSLDHPNNPNTPVYQQTSQSIVK 299 Query: 309 TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSY 368 E K +I E D +SQ L + T EQ + L+R+Q+ + I+ + Sbjct: 300 AEQKTESIAIE---DHANLSSQDDQLGEATYHTVLEQADWEQLLQRMQQADHFAIDTE-- 354 Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428 T ++ V +L F I D +A++ P+A Sbjct: 355 -----TTNLDYRVAEL-----VGFSIAFDANEAYYV-PLA-------------------- 383 Query: 429 IDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 D G L++E +L+ +K ENE KIGH++KYD + +GI ++G Sbjct: 384 --------HDYEGAPEQLSREQVLAQIKPILENEQVKKIGHHLKYDAHIFANHGIIIQGW 435 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 + D ML SYVL++ + H + +A+ +LS+ T ++I ++I +A Sbjct: 436 YFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIELEVAAHYA 495 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V +L+ +L KL +L+++ ++ P+ V++ ME GI++D L Q+S E Sbjct: 496 AEDAHVTYRLYEVLSSKLKSHPELVNILHNIEMPVARVLTGMEEDGIKLDHKFLDQLSVE 555 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 S + +LE +L+GE FN++SPKQ+G++LF KL G KT TGQ+ T+ LE+I Sbjct: 556 FSDTMQTLENQATELAGETFNIASPKQVGEVLFDKLGIKGGKKTATGQYSTSESILEKI- 614 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 ++P+ + ILE R L+K+K+TY D L + T RVHT Y A T TGRL+S +PNLQ Sbjct: 615 --EHPLAEVILEHRGLAKLKNTYTDRLVEQSHDATHRVHTSYHQALTATGRLSSTDPNLQ 672 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+T +G++IR+AFI+P + L++ADYSQIELR++AH ++ L F+ D+HR Sbjct: 673 NIPIRTPIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQQGQDVHRRT 732 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G+ IE V+ RR AK +NF ++YG+S F L QL R E+ YI RYF R+PG Sbjct: 733 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLTRQLGFTREESRSYIARYFQRYPG 792 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + +Y+E+T+ R+ G+VETI GRR++ +I + I+ ERAAINAP+QGSAADI + Sbjct: 793 VLDYMERTRQIAREQGFVETILGRRLYTPDILATNKMIKQAAERAAINAPLQGSAADIIK 852 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI+V K L K K+LLQ+HDELVFE S+ I M+ + + VP Sbjct: 853 LAMIAVDKILP--KDQAKLLLQVHDELVFEADVAIADELSKQIADVMQSV----LEISVP 906 Query: 962 LKVNIKVSNNW 972 V + NW Sbjct: 907 FVVEVGQGLNW 917 >gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010] gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010] Length = 894 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 344/961 (35%), Positives = 537/961 (55%), Gaps = 89/961 (9%) Query: 28 RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87 R G P A+ G ML +LL + IA VIFD TFR+E++ DYKA RP + Sbjct: 7 RNSAGEPTGAVRGVTAMLRRLLADYPDSPIA----VIFDAKGKTFRDELFEDYKAQRPPM 62 Query: 88 PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147 P+ L Q+ + +A G+P + I G EADD+I T+ A ++G V I + DKD+ QL Sbjct: 63 PDDLRSQVQPIHDIIKAMGLPLLVIDGVEADDVIGTFARQATEKGLDVVISTGDKDMAQL 122 Query: 148 VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207 V+ L +T+ E +D + V +K+G+PPE ++ AL GD +DNIPG+PG+G KTA L Sbjct: 123 VNQHVTLVNTMTETTLDPDGVKEKFGLPPELIIDFLALMGDKVDNIPGVPGVGEKTALAL 182 Query: 208 LQEYGNLENILINASRIKQ------KKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261 +Q G++++I + ++ KK E + E + A LS L ++ DV + I +E Sbjct: 183 IQSLGSIKDIYQDLEAVRSLDFRGAKKMPEKLAENKDMAELSYLLATIKCDVELDIDIEA 242 Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID 321 + ++ + L++ K +EF IN + + +N+T Sbjct: 243 IKNQEQDTQSLLTLFKQMEFRSWINELES---------------VNST------------ 275 Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381 T+ T+ + ++D T++ EQ Y I+N + Q W+ Sbjct: 276 ---TVVTAASTPVNDHTTR---EQ---------------------DYHTILNEQQWQDWL 308 Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV---ETIFIDLSVHTSQD 438 +KL +F T ++D ++ + + SF V E ++ L+ H Sbjct: 309 KKLNEAKLFAFDTETTSLDYLEARIVGV-----------SFAVKAGEAAYLPLN-HDYPG 356 Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLD 497 + + +++ LK E+ LK+G N+KYD+ VL + I+++G D ML SYVLD Sbjct: 357 APDQLDFDA-VMADLKPLLEDPTKLKVGQNLKYDRHVLLNHDINLQGIAHDTMLESYVLD 415 Query: 498 SGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554 S + HD+ S+A+K+L ++I K + ++I + +A E++++ LQL Sbjct: 416 STATRHDMDSLAKKYLDRDTIHFEDIAGKGKKQLTFNQIGLEEAAPYAAEDADITLQLHE 475 Query: 555 LLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613 L P++ + L+ VY L+ P++ V++ +E G+ ID +L+ S ++ + LE+ Sbjct: 476 TLWPRIQAIPSLVKVYSELEMPLLPVLNTLERNGVNIDIWMLQSQSDNMAHQIAELEKQA 535 Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673 ++ +G+ FNL SPKQL +IL+ K + P KT GQ T + L+ + + + I++ Sbjct: 536 HESAGQTFNLGSPKQLQEILYEKQELPVKKKTPKGQPSTAEEVLQGLADDGYELPQIIMQ 595 Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733 +R LSK+KSTY D LP +NK + RVHT Y A T TGRL+S +PNLQNIPI+++ G++I Sbjct: 596 YRGLSKLKSTYTDKLPLQVNKSSGRVHTSYHQAVTATGRLSSSDPNLQNIPIRSENGRRI 655 Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 R AF++ L++ADYSQIELRI+AH++ L + F DIHR A+EIF + +E V Sbjct: 656 REAFVASNGYTLLAADYSQIELRIMAHLSGDESLLKAFAAGEDIHRHTASEIFDIALEDV 715 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 S RR AK INF +IYG+S L+ QL I R +AADY++ YF R+PG+ +Y++ T+ Sbjct: 716 SSDQRRSAKAINFGLIYGMSAHGLSKQLGIERHQAADYMQTYFDRYPGVRQYMDNTREQA 775 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 ++ GYVETIFGRR++ EINS R ER AINAP+QGSAADI +RAMI++H L + Sbjct: 776 KEQGYVETIFGRRLYLPEINSSNGMRRQYAERTAINAPMQGSAADIIKRAMIAIHSWLSE 835 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +M++Q+HDELVFEVP E++ A I EK + L+VPL+V I V +NW+ Sbjct: 836 ADTGIRMIMQVHDELVFEVPLEQLDMAKDTI----EKFMMGAAELKVPLEVGIGVGDNWE 891 Query: 974 E 974 + Sbjct: 892 Q 892 >gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 958 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 364/986 (36%), Positives = 545/986 (55%), Gaps = 82/986 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A LS DG P A+ G NML +L R + + + AV+FD Sbjct: 35 LLLVDGSSYLYRAYHAMAQLSAP-DGAPTGALYGVLNMLRRL----RADYVHDYCAVVFD 89 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122 FR+E++PDYKA RP +P+ L PQ LP LVRL G P + I EADD+I Sbjct: 90 AKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVEADDVIG 145 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T +A + G+ V + + DKD+ QLV+ L +T+ E +DIE V +K+G+ P+++ Sbjct: 146 TLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDY 205 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD +DN+PG+ G KTA L+ YG+L ++ +A+ IK K EN+ L Sbjct: 206 LALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIK-GKVGENLQAALPQLLL 264 Query: 243 SRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVATTYDCDA 296 S LV ++TDV + H L D P+ A++F + R T+ +A Sbjct: 265 SYDLVTIKTDVDL-----HTELSDGLESLRRTSPKWSQL--AVDFKRWGFR---TWLKEA 314 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL-ERL 355 + D + + I + +D +T+ SE+ P+K E+L Sbjct: 315 ESRMHEAADGDLFGSDTIGEQAALDMETS-----------------SERLPEKAVAPEKL 357 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 Y + + KL + T ++DA ++ + I+I+ Sbjct: 358 -----------DYQAVTTEAQFAALLDKLSQADTIGIDTETTSLDAMNASLVGISIA--- 403 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK EN KIG N+KYD+ Sbjct: 404 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 455 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 456 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 514 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G+QI Sbjct: 515 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 573 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 574 DRAELARQSAELGAELMKLEQQAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 633 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 634 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 692 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 693 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 752 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG+ E VSP+ RR+AKTINF +IYG+ + LA L I A Sbjct: 753 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 812 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +I RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAAI Sbjct: 813 KTFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 872 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI V + L D L +K+++Q+HDELV EVPE E+ + + M Sbjct: 873 NAPMQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPEAELDLVKEKLPQIM 932 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 EK +N VPL + V NW+E Sbjct: 933 EKVDEGMLN--VPLVAEVGVGMNWEE 956 >gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7] gi|89517759|gb|EAS20415.1| DNA polymerase I [Flavobacteria bacterium BBFL7] Length = 946 Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust. Identities = 348/1006 (34%), Positives = 546/1006 (54%), Gaps = 104/1006 (10%) Query: 4 ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + LFL+D + I+R +YA P ++ G+ +AI GF N L+ +++ + E + Sbjct: 8 DKRLFLLDAYALIFRGYYALIKNPRINSA--GMDTSAIMGFTNSLFDVIRREKPE----Y 61 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV FD R E+Y DYKANR + PE + +P ++ +A IP +E G EADD+ Sbjct: 62 LAVAFDKEGSKERVELYADYKANRDETPEAIKIAVPYIQQILKAMHIPIVEEAGIEADDL 121 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP----- 175 I T AEKEGF +++ DKD QLVS +Y + + + I+ WGIP Sbjct: 122 IGTLAKQAEKEGFTTYMVTPDKDYAQLVSDNIFMYKPAR-----MGNGIEIWGIPEVQKK 176 Query: 176 -----PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 PE+++ + GD+ DNIPG+PG+G KTA + YG++E +L N ++K K + Sbjct: 177 FEVERPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIAAYGSMEGLLDNTDQLK-GKMK 235 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 E ++ AE LS+KL +R D P++ + L+D + + LEF + +A Sbjct: 236 EKVIANAELGLLSKKLATIRLDCPVSFNASNYTLDDPDVEAVHEIFDELEFRRAKETLAK 295 Query: 291 TYDCDAANIEPVV---------------LDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335 + + A + T G A E+E T+ TS Sbjct: 296 IFSKEVAPTSSSSSNSNTSSNSSAGAGQFSLFDTPGSGTAAESESTGRKTLATS------ 349 Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII 395 D ++ E KLFL+ L + S S F Sbjct: 350 DHLYQLVQEGMGTKLFLQSLMQQS-----------------------------SVCFDTE 380 Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455 T +D ++ + IA S K + +D I+ LK Sbjct: 381 TTGLDPLTAELVGIAFSWEKGKG------------FYLPIPEDREAAQV----IVDQLKP 424 Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS 514 FFE+ K+G N+KYD VL +YG+ ++G D ML Y+++ H++ +A+ +L+ Sbjct: 425 FFESASIEKVGQNLKYDIKVLDKYGVDVKGPMFDTMLAHYLINPDMR-HNMDVLAETYLN 483 Query: 515 YTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570 YT + I+ K K+ + + + + +E+A+E++++ LQL P+L +++ Sbjct: 484 YTPQSIVELIGKKGKNQLSMRDVDLEKQKEYAVEDADITLQLKEHFTPELASAGTDKLFK 543 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 ++ P++DV++ MEI GI +D+D L +S ++ ++ LE++IY+++GE+FN+ SPKQLG Sbjct: 544 DIEMPLLDVLAAMEIEGINLDEDFLSSLSGDLETDITQLEKDIYEVAGEEFNIGSPKQLG 603 Query: 631 DILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689 ILF KLK KTKTGQ+ +TA+D+ D+ II+N+L++R LSK+KSTY D+LP Sbjct: 604 VILFEKLKLVDKPKKTKTGQY-STAEDVLSYLAKDHAIIQNVLDYRGLSKLKSTYVDALP 662 Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISA 748 N ++ +TQR+HT Y TGRL+S +PNLQNIPI+T+ G+++R+AFI LI+A Sbjct: 663 NQVDAKTQRIHTNYMQTVAATGRLSSTDPNLQNIPIRTERGRQVRKAFIPRDENYTLIAA 722 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELRI+A +++ + F++ DIH AA++F V +E V+ + R +AKT+NF I Sbjct: 723 DYSQIELRIIAALSEEENMIAAFQSGEDIHASTAAKVFNVALEDVTREQRSNAKTVNFGI 782 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 IYG+S F L+ Q + R EA + I Y+ +P + Y++ +F R+NGYVET+ GRR + Sbjct: 783 IYGVSAFGLSNQTDLSRGEAKELIDTYYATYPKLKAYMQDQVDFARENGYVETVLGRRRY 842 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS + +R ER A+NAPIQGSAADI + AMI++HK E+ +KMLLQ+HDEL Sbjct: 843 LKDINSSNAVVRGAAERNAVNAPIQGSAADIIKIAMINIHKKFEEMNCKSKMLLQVHDEL 902 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 VF++ +E+ ++I M+ A + VPL V + NW E Sbjct: 903 VFDIHNDELEDMKKLIQGEMQNAY----KMTVPLDVEVGTGQNWLE 944 >gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900] Length = 923 Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust. Identities = 352/973 (36%), Positives = 546/973 (56%), Gaps = 60/973 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS F++RA++A P L+ GL NAI G + + KL++ + +H AVIFD Sbjct: 4 FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQ----PTHMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T Sbjct: 59 TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A KEG V I + DKD+ QLV+ L D+ K+ +D + V +K+G+ P +++ L Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G KTAA LL EYG L+NI+ N ++K K +NI + + +L +L Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + ++P+ + L L D N L + LEF + + + ++++ + Sbjct: 238 ASIVCNLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + ++ E+ TI+T +SL+ Q ++ + L E +L Q N D Sbjct: 292 --QQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 + ++T+ + E +G F I D DA++ P+A Q+ D Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDR------ 397 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 +++L+ +K ENE KIGH++KYD + +GI ++G Sbjct: 398 --------------------EQVLAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKGW 437 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 + D ML SYVL++ + H + +A+ +LS+ T ++I ++I +A Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V +L+ +L KL +L ++ ++ P+ ++S ME GI++D L ++S E Sbjct: 498 AEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 +K + LE +++GE FN++SPKQ+G+ILF KL G KT TGQ+ T+ LE+I Sbjct: 558 FAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 ++P+ + ILE R L+K+KSTY D L + T RVHT Y A T TGRL+S +PNLQ Sbjct: 617 --EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+ +G++IR+AFI+P + L++ADYSQIELR++AH ++ L F++ D+HR Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G+ IE V+ RR AK +NF ++YG+S F L QL R E+ +YIK+YF R+PG Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRYPG 794 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I+EY+++T+ + G+VETI GRR++ +I++ +R ERAAINAP+QGSAADI + Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI V K L K K+LLQ+HDELVFEV S+ I M+ + + VP Sbjct: 855 LAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEISVP 908 Query: 962 LKVNIKVSNNWQE 974 L V + NW + Sbjct: 909 LVVEVGQGKNWDD 921 >gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 923 Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust. Identities = 354/974 (36%), Positives = 549/974 (56%), Gaps = 62/974 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS F++RA++A P L+ GL NAI G + + KL++ + +H AVIFD Sbjct: 4 FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQ----PTHMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T Sbjct: 59 TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A KEG V I + DKD+ QLV+ L D+ K+ +D + V +K+G+ P +++ L Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G KTAA LL EYG L+NI+ N ++K K +NI + + +L +L Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + D+P+ + L L D N L + LEF + + + ++++ + Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + ++ E+ TI+T +SL+ Q ++ + L E +L Q N D Sbjct: 292 --QQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 + ++T+ + E +G F I D DA++ P+A Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYI-PLA------------------ 385 Query: 427 IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 H +++ + L +E +L+ +K ENE KIGH++KYD + +GI ++G Sbjct: 386 -------HNYENAPQQ--LNREQVLAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKG 436 Query: 486 -FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541 + D ML SYVL++ + H + +A+ +LS+ T ++I ++I + Sbjct: 437 WYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHY 496 Query: 542 AIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 A E+++V +L+ +L KL +L ++ ++ P+ ++S ME GI++D L ++S Sbjct: 497 AAEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSV 556 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 E +K + LE +++GE FN++SPKQ+G+ILF KL G KT TGQ+ T+ LE+I Sbjct: 557 EFAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI 616 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 ++P+ + ILE R L+K+KSTY D L + T RVHT Y A T TGRL+S +PNL Sbjct: 617 ---EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNL 673 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIPI+ +G++IR+AFI+P + L++ADYSQIELR++AH ++ L F++ D+HR Sbjct: 674 QNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRR 733 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 AAE+ G+ IE V+ RR AK +NF ++YG+S F L QL R E+ +YIK+YF R+P Sbjct: 734 TAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYFQRYP 793 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 GI+EY+++T+ + G+VETI GRR++ +I++ +R ERAAINAP+QGSAADI Sbjct: 794 GIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADII 853 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 + AMI V K L K K+LLQ+HDELVFEV S+ I M+ + + V Sbjct: 854 KLAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----LEISV 907 Query: 961 PLKVNIKVSNNWQE 974 PL V + NW + Sbjct: 908 PLVVEVGQGKNWDD 921 >gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] Length = 931 Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust. Identities = 364/983 (37%), Positives = 545/983 (55%), Gaps = 72/983 (7%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + I+R +YA P ++ K G+ +AI GF N L +++ RKE AV Sbjct: 4 LFLLDAYALIFRGYYAFIKNPRINSK--GMNTSAIVGFMNSLLEVI---RKEQ-PHLLAV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD R+ ++P+YKANR + PE + +P + A IP IE +G+EADDII T Sbjct: 58 CFDKGGSQERSALFPEYKANREETPEAIRFAIPYIHQILHAMQIPVIEKEGYEADDIIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIP-PEK 178 AEK+G+ V +++ DKD QLVSP +Y + K +E V + + + PE+ Sbjct: 118 LAKQAEKQGYTVYMVTPDKDYGQLVSPNIFMYKPARGGKDTEIWGVEEVKENFQVENPEQ 177 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ L + GD++DNIPG+PG+G KTA LL+E+G+LEN+L N ++K K RENI + Sbjct: 178 VIDLLGMMGDAVDNIPGLPGVGEKTAQKLLKEFGSLENLLDNTDKLK-GKLRENIEANKD 236 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 LS+ L + DVP+T + L + + LEF ++ + + N Sbjct: 237 KGILSKTLARIILDVPVTFDEKDFELSSPKMAEIEPLFEELEFRTMLTTLQKAF-----N 291 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 + P I T+ D SL+ Q S I TP L +KL Sbjct: 292 VAP--------------ISTQPD---------LFSLAGQPSPIAGTATPSLFDLAPSKKL 328 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 Y + +++ + +L F T ++D ++ + +A S K Sbjct: 329 QTIKDVPHEYQLLTTQDEVKALLPELLKQKEVCFDTETTSLDEMEAQIVGLAFSWEVHKG 388 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 E +L KE LS LK FFE E+ LKIG N+KYD +L Sbjct: 389 YYILFPEDF----------------SLAKEWLSLLKPFFEAENILKIGQNLKYDLKILAN 432 Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPIDKI 533 Y I +RG D M+ Y+L+ H++ +A+ +LSY I K K + + + Sbjct: 433 YDIEVRGQLFDTMIAHYLLNPDMR-HNMDLLAEAYLSYAPVAIETLIGKKGKGQLSMCSV 491 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 +E+A+E+++V LQL P L +K+ ++ ++ P++ V++QME GI +D Sbjct: 492 PAELQKEYAVEDTDVTLQLKHTFLPLLEKDKMTPLFTEVEAPLVRVLAQMEYEGIAVDTA 551 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF-TKLKFPSGAKTKTGQWKT 652 L Q+S EI+ +L++L+ I++ +GE FNLSSPKQLGDILF KTKTGQ+ T Sbjct: 552 FLSQLSKEINTDLIALQTAIFEQAGESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYAT 611 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + L ++ +PI+ N+LE+R L K++STY D+LP +N RT R+HT + A T TGR Sbjct: 612 SEEVLSEL-ASQHPIVANVLEFRALQKLQSTYTDALPREVNPRTGRIHTTFMQAVTATGR 670 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVF 771 L+S +PNLQNIPI+T G +IR+AF+ L+SADYSQIELRI+A +++ T + + F Sbjct: 671 LSSNQPNLQNIPIRTPRGSQIRKAFVPRDENYTLLSADYSQIELRIIAALSEETHMIEAF 730 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DIHR AA++FGV +E V+ + R HAKT+NF IIYG+S L+ Q + RS++ + Sbjct: 731 LDGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVSAIGLSQQTSLSRSQSKEL 790 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I Y+ +P + YIE+ F R++GYV+T+ GRR + +I+S +R ER A+NAP Sbjct: 791 IDTYYQTYPKLKTYIEQQIFFAREHGYVQTLLGRRRYLPDIHSRNQVVRGAAERNAVNAP 850 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGSAADI + AM+ + + LE KLAT+MLLQ+HDEL+F+VP+ E+ + +I M A Sbjct: 851 IQGSAADIIKIAMVRIAERLEKEKLATRMLLQVHDELLFDVPKRELEVVTPLIREEMGHA 910 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL V I NNW E Sbjct: 911 Y----ALSVPLIVEIGTGNNWLE 929 >gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] Length = 923 Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust. Identities = 360/978 (36%), Positives = 549/978 (56%), Gaps = 70/978 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS F++RA++A P L+ GL NAI G + + KL++ + +H AVIFD Sbjct: 4 FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQ----PTHMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T Sbjct: 59 TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A KEG V I + DKD+ QLV+ L D+ K+ +D E V +K+G+ P +++ L Sbjct: 119 RAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTESVFEKFGVWPNQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G KTAA LL EYG L+NI+ N ++K K +NI + + +L +L Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLDNIKLDHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + D+P+ + L L D N L + LEF + + D N + Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSL------DHPN------NP 285 Query: 307 NTTENKGIA----IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 N + K A ++ E+ TI+T +SL+ Q ++ + L E +L Q Sbjct: 286 NNSSYKQQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRM 345 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 N D + ++T+ + E +G F I D DA++ P+A Sbjct: 346 QNADHFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYI-PLA-------------- 385 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 H +++ + L +E +L+ +K ENE KIGH++KYD + +GI Sbjct: 386 -----------HNYENAPQQ--LNREQVLAQIKPVLENEAVKKIGHHLKYDAHIFANHGI 432 Query: 482 SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQ 537 ++G + D ML SYVL++ + H + +A+ +LS+ T ++I ++I Sbjct: 433 ELKGWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEV 492 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +A E+++V +L+ +L KL +L ++ ++ P+ ++S ME GI++D L Sbjct: 493 AAHYAAEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDHAFLD 552 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 ++S E +K + LE +++GE FN++SPKQ+G+ILF KL G KT TGQ+ T+ Sbjct: 553 KLSVEFAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESV 612 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE+I ++P+ + ILE R L+K+KSTY D L + T RVHT Y A T TGRL+S Sbjct: 613 LEKI---EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSS 669 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIPI+ +G++IR+AFI+P + L++ADYSQIELR++AH ++ L F++ D Sbjct: 670 DPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQD 729 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 +HR AAE+ G+ IE V+ RR AK +NF ++YG+S F L QL R E+ +YIK+YF Sbjct: 730 VHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYF 789 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+PGI+EY+++T+ + G+VETI GRR++ +I++ +R ERAAINAP+QGSA Sbjct: 790 QRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSA 849 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI V K L K K+LLQ+HDELVFEV S+ I M+ + Sbjct: 850 ADIIKLAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV----L 903 Query: 957 NLRVPLKVNIKVSNNWQE 974 + VPL V + NW + Sbjct: 904 EISVPLVVEVGQGKNWDD 921 >gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1] Length = 959 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 366/989 (37%), Positives = 551/989 (55%), Gaps = 85/989 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGS +++R F+ P LS GLP NAI G N L KL+ K+ +H AV FD Sbjct: 33 VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 87 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ + YKA+RP + E L Q+P + + GI I+I GFEADDII T Y Sbjct: 88 TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 147 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G V I + DKD+ QLV+ L D+ + D VI+K+G+ E++ AL Sbjct: 148 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 207 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I GIP +G KTAA LL EY N++ IL N + IK + +I + ++ L+R L Sbjct: 208 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 266 Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300 + T++ +TI + + L+ P L + + LEF K + + A + Sbjct: 267 ATIVTNLKLTISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 321 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + +K ++I+ D T+ S QTP Sbjct: 322 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 344 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418 PI + SY I +D + + KL + F I T+T D H+K + I++ST D Sbjct: 345 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 399 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E +I + D N L + +LS K EN + KIG ++KYD + Sbjct: 400 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 454 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533 +YGI++ ++ D ML SYV+++ + H + ++A+ +L + T +++ + DK+ Sbjct: 455 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 514 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + ++A E++++ +L+ + +K + L+ P +++QME GI ID Sbjct: 515 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 574 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L Q+S E K +++L+ ++ E FNL+SPKQLG+ILF KL G KTKTGQ+ T Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L +I ++P+I +LE R LSK+KSTY D+L N +++ RVHT Y A T TGR Sbjct: 635 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 690 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+TD G+ IR AFI+P + +++ADYSQIELR++AH + L + F Sbjct: 691 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 750 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 ++LDIH AAEI G +I +V+P RR AK +NF ++YG+S F LA Q+ + R+ A DYI Sbjct: 751 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 810 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 KRYF R+P I EY+E+TK +Q GYV+TI GR+++ +I S I++ ERAAINAP+ Sbjct: 811 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 870 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAA+I + AMI+V + L K K+LLQ+HDELVFEV ++ +I +M+ A Sbjct: 871 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 928 Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974 ++ VPL V I + NW++ Sbjct: 929 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 957 >gi|332304401|ref|YP_004432252.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5] Length = 928 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 354/986 (35%), Positives = 543/986 (55%), Gaps = 90/986 (9%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N LVDGSS+++RAF+ P L+ G A+ G NML L+ K+ +H AV+ Sbjct: 15 NPFILVDGSSYLFRAFHGMPPLTNSK-GQDTGAVYGVINMLRSLI----KQFNPTHMAVV 69 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+EIY +YKANRP +PE L Q+ + QA G+P I G EADD+I T Sbjct: 70 FDAKGKTFRDEIYTEYKANRPSMPEELRSQIAPLHKIIQAMGLPIIVESGVEADDVIGTL 129 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A K G I + DKD+ QLV+ L +T+ + +D + V++K+GIPPE ++ A Sbjct: 130 ADQASKLGIPTLISTGDKDMAQLVNEHVTLINTMNNQIMDPQGVVEKFGIPPELVIDFLA 189 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAE 238 L GD +DNIPG+PG+G K+A LLQ G++ I N +I KK + + EY E Sbjct: 190 LKGDKVDNIPGVPGVGDKSAVGLLQGIGSINEIYQNLDKIATLDFRGAKKMADKMREYEE 249 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 ARLS L ++ DV + DC + Sbjct: 250 QARLSYTLATIKLDVEM-------------------------------------DCSPTS 272 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN-SEQTPQKLFLERLQK 357 + P + N +E + + E E R T S +DQ S+ + S P + Sbjct: 273 LSPT--EANYSELRDLFAELEFKRWLKEATDALSG-NDQLSQADQSNDEPAQ-------- 321 Query: 358 LSQYPINND---SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 N D +Y I+ + W++KL +F T +++ ++ + ++ + Sbjct: 322 ------NTDIKANYHTILTQDALDDWLKKLHNAALFAFDTETTSLNYMQAELVGMSF-CI 374 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 ++ + + + D +DS +L+ K E+++ K+G ++KYDK Sbjct: 375 EEGEAAYLPLAHDYADAPEQLDRDS---------VLALFKPLLEDKNKAKVGQHLKYDKN 425 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 VL Y I+++G D ML SYVLDS + HD+ S+AQ +L + ++I + Sbjct: 426 VLANYDINLQGIAYDTMLESYVLDSVATRHDMDSLAQHYLGLSTVHFEDIAGKGAKQLTF 485 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 ++I Q +A E++++ L+L + KL +L V ++ P+ V+++ME G+ Sbjct: 486 NQIPLEQAAHYAAEDADITLRLHNHIWKKLNQSPELASVLSEIEVPLATVLAKMEQFGVL 545 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID L Q S +++ +L LE ++ L+GE+FNL S KQL +ILF KL P KT G Sbjct: 546 IDSQKLGQQSQDLASRILQLENEVHILAGEEFNLGSTKQLQEILFKKLDLPVLKKTPKGA 605 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T+ + L+++ P+ K ++E+R LSK+K+TY D LP IN+R+ RVHT Y A T Sbjct: 606 PSTSEEVLQELAL-TYPLPKLLMEFRVLSKLKNTYTDKLPKMINQRSGRVHTSYHQAITA 664 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S EPNLQNIPI+T+ G+++R+AFI P K+++ADYSQIELRI+AH+++ L + Sbjct: 665 TGRLSSTEPNLQNIPIRTEQGRRVRQAFIPRPGYKIVAADYSQIELRIMAHLSQDKGLLK 724 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIH AAE+F V++E+V+ + RR+AK INF +IYG+S F L+ QL + R +A Sbjct: 725 AFSQGKDIHTATAAEVFNVSLEEVTTEQRRNAKAINFGLIYGMSAFGLSKQLNVSRQDAQ 784 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 Y+ YF R+PG+ +Y+E + ++ GYV T+FGRR++ +IN+ R ERAAIN Sbjct: 785 HYMDLYFERYPGVLKYMEDARVVAKEKGYVSTVFGRRLYLPDINASNGLRRKGAERAAIN 844 Query: 890 APIQGSAADITRRAMISVHKSLED-HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 AP+QG+AADI ++AM+ V ++ T+M++Q+HDEL+FE+ E+ + + IV M Sbjct: 845 APMQGTAADIIKKAMLKVDAWIDTLPNDQTRMIMQVHDELIFEIKEQNVESDKNTIVDLM 904 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 EKA ++L VPL V V NW E Sbjct: 905 EKA----VSLDVPLIVEAGVGENWDE 926 >gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1] gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter sp. ADP1] Length = 920 Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust. Identities = 354/978 (36%), Positives = 545/978 (55%), Gaps = 77/978 (7%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 LVDGS F++RAF+A P L+ GL NAI G + + KL++ ++ +H AVIFD P Sbjct: 6 LVDGSYFLFRAFHALPPLTTS-TGLQTNAIRGAISAIQKLMRRTQP----THMAVIFDTP 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR+E+ P YK +RP +P+ L Q+P + +A GIP + G EADD+I T A Sbjct: 61 EPTFRHELSPIYKGDRPSMPDELAQQIPYLHALIKALGIPLYMLPGAEADDVIGTLAKRA 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 EKEG V I + DKD+ QLV+ L D+ K++ +DI+ V K+G+ P +++ L GD Sbjct: 121 EKEGHQVLISTGDKDMAQLVTEKVTLEDSFKDKPMDIQGVFDKFGVWPNQIIDYLTLMGD 180 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248 + D I G+PGIG KTAA LL EYG++ IL N +IK K +NI + A+ + +L Sbjct: 181 ASDGIMGVPGIGAKTAAKLLTEYGSIGGILENVDQIK-GKVGQNIKDNADGIVIDHQLAS 239 Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI-------NRVATTYDCDAANIEP 301 + D+ + + + L L D + L + LEF + N V+ TY A ++ Sbjct: 240 IVCDLDLALTWDDLQLRDPHVETLRNLYTELEFRNQLQSLDHPHNPVSQTYKQTAQQMDK 299 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 V + IETE D TS+ L Q L+R Q ++ Sbjct: 300 VEV--------APQIETE---DQASLTSEDDQLGTANYHTVLTQEAWDALLKRFQSEKRF 348 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 I+ ++ + E +G F + D DA++ Sbjct: 349 AIDTETTSLDYRVA---------EMVG---FSVAFDAQDAYY------------------ 378 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 + + D+ + ++IL+ LK E+E KIGH++KYD + + + Sbjct: 379 ---------VPLTHDYDNAPEQLNREQILAQLKPILEDETVHKIGHHLKYDAHIFANHSV 429 Query: 482 SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQ 537 ++G + D ML SYV++S + H + +A+ +LS+ T ++I ++I Sbjct: 430 ELKGWYFDTMLASYVINSVATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEV 489 Query: 538 VQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +A E+++V +L+ +L KL +L ++ ++ P+ +++ ME GI++D L Sbjct: 490 AAHYAAEDAHVTYRLYEVLAQKLKSAPELENILYNIEMPVARILTGMEEAGIKLDHSFLG 549 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 Q+S E ++ +L LE +L+GE FN+SSPKQ+G+ILF K+ G KT TGQ T+ Sbjct: 550 QLSVEFTETILGLENQAIELAGESFNVSSPKQVGEILFDKMGLKGGKKTATGQHSTSESI 609 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE++ ++PI + ILE R LSK+K+TY D L + T RVHT Y A T TGRL+S Sbjct: 610 LEKV---EHPIAEVILEHRTLSKLKNTYTDRLVEQSHNETHRVHTSYHQALTATGRLSSS 666 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIPI+ ++G++IR+AFI+P + L++ADYSQIELR++AH ++ L F++ D Sbjct: 667 DPNLQNIPIRGEIGRQIRKAFIAPEGRILLAADYSQIELRLMAHFSQDEALLDAFQHGQD 726 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 +HR AAE+ + +E+V+ RR AK +NF ++YG+S F L QL R E+ +YIK+YF Sbjct: 727 VHRRTAAEVLNIPLEEVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYIKQYF 786 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 HR+PGI+EY+++T+ + G+VETI GRR++ +I++ +R ERAAINAP+QGSA Sbjct: 787 HRYPGIYEYMQRTRQVALEQGFVETILGRRLYTPDIDARNMMVRKGAERAAINAPLQGSA 846 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI V K L K K+LLQ+HDELVFEV + + + +M+ + Sbjct: 847 ADIIKLAMIEVDKMLP--KDQAKLLLQVHDELVFEVDADLADELAPKLAETMQSV----V 900 Query: 957 NLRVPLKVNIKVSNNWQE 974 N+ VPL V + NW+E Sbjct: 901 NISVPLLVEVGQGLNWEE 918 >gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] Length = 939 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 356/978 (36%), Positives = 545/978 (55%), Gaps = 64/978 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGSS+++RAF+A P L+ G AI G NM+ KLL+ + E IA V+FD Sbjct: 14 FILVDGSSYLFRAFHAMPPLTNTK-GHATGAIFGVINMIGKLLEQYQPERIA----VVFD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+E+Y DYKA+RP +P+ L Q+ + +A GIP + I G EADD++ T + Sbjct: 69 AKGKNFRHELYEDYKAHRPPMPDELRIQIEPIHEIIKALGIPLLVIDGVEADDVMGTLAH 128 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + + + DKD+ QLV+ L +T+ + + + V +K+ + PE+++ AL Sbjct: 129 QATQAKMDALLSTGDKDMAQLVNEHITLVNTMNDTLMTPDSVFEKFHVKPEQIIDYLALM 188 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPGIP G KTAA + EYG+++N++ +A IK K EN+ E +LS++L Sbjct: 189 GDSSDNIPGIPKCGPKTAAKWISEYGSIDNLIEHAEEIK-GKIGENLRANLEQLKLSQQL 247 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 +R D + I L + + + L + + + RV Sbjct: 248 TTIRLDCDLPIALNDIKRHEADMEALEALFSEYDLRNWLTRVL----------------- 290 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN---SEQTPQKLFLERLQKLSQYPI 363 KG E + + K + + Q+ K N S +TP+ Sbjct: 291 -----KG---ELPFSKSSGRKAHSETVTNGQSKKANTSPSTETPKA-------------- 328 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLDQKDDTS 421 ++ Y IV+ QW++KLE S F I T+T ++A +K + ++ + ++KD + Sbjct: 329 DSQPYETIVDWHTFDQWLKKLE--ASDVFAIDTETTSLNAMEAKIVGVSFAYAEKKDQ-A 385 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 ++ ++ L+ D + +E+L+ LK EN K+G N KYD + GI Sbjct: 386 WQNFAAYVPLT--HDYDGAPEQLPIQEVLAKLKPLLENPAIKKVGQNFKYDWHIFKNAGI 443 Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537 ++G D ML SY +S + H++ +A +L+++ K+I + K ++I Sbjct: 444 EVQGMAYDTMLESYCFNSVATRHNMDDLALTYLNHSTIHFKDIAGTGKKQKTFNQIELET 503 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +A E++++ LQL L PKL E L+ V+E ++ P++ V+++ME G+ ID+ +L Sbjct: 504 ASPYAAEDADITLQLHQTLLPKLQAEPTLYKVFEEIEMPLMPVLAKMERNGVLIDRQMLA 563 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 S E+ + L LE+ + ++G FNL+S KQL ++LF +L+ P KT GQ T Sbjct: 564 DQSYELGQKLTELEQKAHLIAGTPFNLNSSKQLQEVLFERLELPIVKKTPKGQPSTAEPV 623 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 L Q+ + + ILE+R L+K+KSTY DSLP IN++T RVHT Y A TGRL+S Sbjct: 624 LVQLAEDGHEMPNLILEYRSLAKLKSTYTDSLPKQINQQTGRVHTSYQQAVASTGRLSST 683 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 EPNLQNIPI++ G++IR+AFI+ P +L+++DYSQIELRI+AH++ L + F D Sbjct: 684 EPNLQNIPIRSAEGRRIRQAFIAQPGYRLMASDYSQIELRIMAHLSGDASLLKAFAEGKD 743 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH+ AAEIF + +E+V+ + RR AK +NF +IYG+S F LA QL I R A +YI YF Sbjct: 744 IHQATAAEIFNMPLEEVTSEQRRSAKAVNFGLIYGMSAFGLAKQLNISRGLAQEYINLYF 803 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+PG+ Y+E TK +Q GYVET+ GRR++ +IN+ +R ER AINAP+QG+A Sbjct: 804 ARYPGVANYMESTKENAKQTGYVETLMGRRLYLPDINAKNGQLRQYAERTAINAPMQGTA 863 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AM+ + + L+ KML+Q+HDELVFEV E ++ A + I ME A + Sbjct: 864 ADIIKTAMVKMQQWLDQTPCDIKMLMQVHDELVFEVAEADMDQARKEIKTIMEAA----L 919 Query: 957 NLRVPLKVNIKVSNNWQE 974 L VPL V I NW E Sbjct: 920 KLDVPLIVEIGDGLNWDE 937 >gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN] gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN] Length = 926 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 356/987 (36%), Positives = 535/987 (54%), Gaps = 72/987 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDGSS++YRAF+A P L R G +A G + ++Q RKE A + Sbjct: 1 MSDKKTLLLVDGSSYLYRAFHAMPDL-RAVPGDRASAATGAIRGMINMMQALRKEVHADY 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A +FD TFR+ IYP YK R +P+ L Q+ + + G +++ G EADD+ Sbjct: 60 AACVFDAKGPTFRDTIYPAYKQQRSPMPDDLRTQIAPIHEVVRLLGWKVLDVPGVEADDV 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T +A ++G V + S DKDL QLV + DT+ ++ D+ V ++G+P M+ Sbjct: 120 IGTLAVVAARQGIDVIVSSGDKDLAQLVDERITIIDTMNGKRRDLAGVEAEFGVPARLML 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 Q L GD +DN+PG+ +G KTAA L EYG+L+ ++ +A +IK EN+ + + Sbjct: 180 DYQTLVGDQVDNVPGVEKVGPKTAAKWLLEYGSLDALVQSADKIKGVAG-ENLRKALDWL 238 Query: 241 RLSRKLVMLRTDVPI-----TIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 R+L+ ++TD + +P H L L +G RL +F + F L + Sbjct: 239 PTGRQLLTIKTDCELDSWVDGLPALHALALGTPDGERLRAFYELYGFKGLARALG----- 293 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 DAA PVV + +D ++ +E + + Sbjct: 294 DAAP-APVV---------------------AMPGESGDLFADHSASPVAEAAQHRTVV-- 329 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 Y I+N D +W ++L T + T ++D ++ + I+ S Sbjct: 330 -------------YDTILNWADFDRWRERLLTAELVALDTETTSLDEMRAEIVGISFSVQ 376 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 E +I L+ HT D+ + L E+L+ LK + E+ + K+G ++KYD+ Sbjct: 377 PG--------EAAYIPLA-HTGPDAPEQLPLG-EVLARLKPWLEDARYPKLGQHVKYDRH 426 Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 V + I +RG+ D ML SYVL+ H +AS+A++ T +++ IP Sbjct: 427 VFANHDIDVRGYVHDTMLQSYVLEV-HKPHGLASLAERHTGRTGISYEDLCGKGAHQIPF 485 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589 ++ + ++ E+S+ L + L L P L + KL +YE L+ + + ++E G+ Sbjct: 486 AQVPVDKAAAYSCEDSDQTLDVHLALWPLLQADDKLRFIYE-LEIASSEALYRIERNGVL 544 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID L Q S E+ + +L LE Y+++G+ FNLSSPKQLG+I F KL P KT TG Sbjct: 545 IDAPTLAQQSHELGQRILQLETEAYEIAGQPFNLSSPKQLGEIFFDKLGMPVVKKTATGA 604 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + LE++ D P+ +LE R L+K+K TY D L RT RVHT Y+ A + Sbjct: 605 RSTDEEVLEKL-AEDYPLPAKLLEHRSLTKLKGTYTDKLAQLALPRTGRVHTHYAQAVAV 663 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIPI+T G+++R AF++PP + SADYSQIELRI+AHI+ L Sbjct: 664 TGRLSSNDPNLQNIPIRTAEGRRVREAFVAPPGCVIASADYSQIELRIMAHISGDHALLH 723 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F LD+HR AAE+FGV +++V+ + RR+AK INF +IYG+S F LA L I AA Sbjct: 724 AFHAGLDVHRATAAEVFGVALDQVTSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAA 783 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 YI RYF R+PG+ +Y+++TK + GYVET+FGRR++ EINSP R ERAAIN Sbjct: 784 AYIDRYFQRYPGVKQYMDETKAQAKARGYVETVFGRRLYLPEINSPNGPRRAGAERAAIN 843 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AAD+ + AM++V K L+ HK KM++Q+HDELVFE+PE E+ I M Sbjct: 844 APMQGTAADLIKLAMVAVQKELDAHKPGIKMIMQVHDELVFELPEGEVDWLRGHIPRLMA 903 Query: 950 KACLPKINLRVPLKVNIKVSNNWQEEN 976 + L+VPL + V NW + + Sbjct: 904 EVA----ALKVPLLAEVGVGANWDKAH 926 >gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165] gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165] Length = 954 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 369/1003 (36%), Positives = 550/1003 (54%), Gaps = 88/1003 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ K G P A+ G NML L+ SH AV Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNKQ-GEPTGAMYGVLNMLKSLIAQVEP----SHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + I+G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEQYKSHRPPMPDELRSQIQPLHAIIKALGIPLLSIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV+ L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LAVQASQAGKHVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYA 237 AL GDS DNIPG+ G+G KTA LLQ G+++ I N ++ + R + Sbjct: 181 ALLGDSSDNIPGVKGVGEKTAIALLQGIGSMQAIYANLDKVAELSFRGAKTFAPKLEAEK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 ETA LS L ++TDV + + + LI + +L+ EF + +N V + A Sbjct: 241 ETADLSYLLATIKTDVALDVTYDQLITQPQQRDQLVELFGRYEFKRWLNEV-----MNDA 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N PV T + + T ++SEQ K Sbjct: 296 N--PV---------------------TQTSAEKIPNNYQATQAVSSEQKSAPFV-----K 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +S I+ +Y + + + +W+ KL+ + TD +DA + + I+ + Sbjct: 328 IS---IDRTAYDCVNSPELFTKWLAKLQMAELVAVDTETDNLDAMQANLVGISFGLENG- 383 Query: 418 DDTSFKVETIFIDLSVH------TSQDSTGK-------------NTLTK-EILSYLKKFF 457 E +I L+ T D G+ N L K + L+ LK Sbjct: 384 -------EACYIPLAHKGKIAQPTQVDLFGESEAELDEVEALLPNQLNKADCLAQLKPIL 436 Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY 515 EN + KIG NIKYD + RYGI ++G D ML SY LDS GR H++ ++A+++L + Sbjct: 437 ENPNIRKIGQNIKYDLTIFARYGIELQGVAFDTMLQSYTLDSTGR--HNMDNLAERYLGH 494 Query: 516 TR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYER 571 +E+ K + D+I + E+A E++ + ++L LL +L +L+ ++E+ Sbjct: 495 QTIPFEELAGKGKHQLTFDQIELDKATEYAGEDAEITMKLHQLLWSELQKTPELVKLFEQ 554 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P++ V+S++E G+ ID L S EI + L LE ++ +GE FNL+S KQL + Sbjct: 555 IEMPLVSVLSRVERNGVLIDPAKLLAHSVEIEQRLKELETLVHQEAGEVFNLASTKQLQE 614 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF KL P KT G T + LE++ + + ++E R LSK+KSTY D LP Sbjct: 615 ILFNKLGLPILKKTPKGAPSTNEEVLEELAQMGHQVPVLLMEHRGLSKLKSTYTDKLPQM 674 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 IN +T RVHT Y A T TGRL+S +PNLQNIPI+ + G++IR+AFI+ +++ADYS Sbjct: 675 INAQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEQGRRIRQAFIARDGYVILAADYS 734 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELRI+AH+A + + F DIHR AAEIFGV +E V+ + RR AK INF +IYG Sbjct: 735 QIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIYG 794 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 +S F LA QL I R++A Y++ YF R+P + +++ + + GYVET+FGRR++ E Sbjct: 795 MSEFGLANQLGISRTDAKKYMELYFQRYPAVQQFMLDIREKAAEKGYVETLFGRRLYLPE 854 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 INS R ER AINAP+QG+AADI + AMI + +++ + + M++Q+HDELVFE Sbjct: 855 INSSNQMRRKAAERVAINAPMQGTAADIIKVAMIGIDQAVRNCE-DIAMIMQVHDELVFE 913 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 V + + +Q+I MEKA I L+VPL + V +NW E Sbjct: 914 VKADRVEHYTQLIKAEMEKA----IELKVPLIAEVGVGSNWDE 952 >gi|93005249|ref|YP_579686.1| DNA polymerase I [Psychrobacter cryohalolentis K5] gi|92392927|gb|ABE74202.1| DNA polymerase I [Psychrobacter cryohalolentis K5] Length = 988 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 362/1002 (36%), Positives = 545/1002 (54%), Gaps = 90/1002 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS +++R ++A P + GL NAI G N L KL++ +H AV FD Sbjct: 41 FILVDGSYYLFRTYHALPKTMQNSQGLVTNAIRGTLNALLKLMRRYHP----THMAVCFD 96 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFR+ + +YKANRPK+ L Q+P + A GIP + I+G EADDII T Y Sbjct: 97 TKSPTFRHAMSEEYKANRPKMDIELAEQIPYIHRLVTALGIPLLRIEGAEADDIIGTLAY 156 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A EG V I + DKD+MQL++ L D+ + D V++K+GI PE+M+ L Sbjct: 157 RAVAEGHHVVISTGDKDMMQLINDCVILEDSFTGKMTDSAGVVEKFGINPEQMIDFLTLM 216 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS D I G+PGIG KTA LL EYGN++N+L N + IK + + N+LEYA+ ++ +L Sbjct: 217 GDSSDGIKGVPGIGKKTAKDLLNEYGNIDNMLKNVANIKGRAGK-NLLEYADDIPMNAQL 275 Query: 247 VMLRTDVPI----------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + TD+ + T P H+ L LEF N +A+ Sbjct: 276 ATIVTDLEVGQDWQDLKINTDPCAHI-------NELRELYSELEFR---NELAS------ 319 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 LD G T+ ++ SQ + S Q + L + Sbjct: 320 -------LDHPNHPANGNGHGTQ-----SVAHSQADAES-------QAQIAKSLQSSTIG 360 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 ++ I++ ++ I++ VQ L + + F I T+T + + + +S Q Sbjct: 361 DITDSKIHDRAWHTILDESAFDNLVQLLAS--APHFVIDTETTSVYWRQAELVGLSFAVQ 418 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLV 475 E +I L+ D L ++ +L+ LK EN + KIG ++KYD + Sbjct: 419 AH------EAYYIPLTHALEGDELIAKQLDRDTVLARLKPILENPNIGKIGQHLKYDAHI 472 Query: 476 LHRYGISMRG---------FEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKS 523 L Y I++ G D ML SYV+++ + H + +A+ +L + + +++ Sbjct: 473 LSLYDINLLGNIHDKPNNWAMDTMLASYVINAAITRHGMDDLARHYLQTQTISFEDVAGK 532 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDV 579 + D+++ ++A E++++ QL+ L KL + KLLH L+ P ++ Sbjct: 533 GAKQVSFDQVAIDIASDYACEDADITYQLFDLFSKKLADDTNNAKLLH---ELEIPTAEI 589 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 + QME GI I + L ++S + +++LE+ Y+++GE+FNL SPKQLG++LF KL Sbjct: 590 LCQMEANGILIRRPFLNELSKRFDEEIIALEKRAYEVAGEEFNLGSPKQLGEMLFDKLGV 649 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 G KTKTGQ+ T L +I D+P++ LE+R LSK+KSTY D+L N + +T RV Sbjct: 650 VGGKKTKTGQYSTGEAVLSKI---DHPLVDITLEYRGLSKLKSTYTDALDNVADAKTDRV 706 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 HT Y A T TGRL+S +PNLQNIPI+T G+ IR+AFI+P + +++ADYSQIELR++A Sbjct: 707 HTSYHQALTSTGRLSSTDPNLQNIPIRTATGRLIRQAFIAPEGRVILAADYSQIELRLMA 766 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H + L F LDIH AAE+ G + +V+ RR+AK INF ++YG+S F LA Sbjct: 767 HFSGDKNLTHAFNEGLDIHAATAAEVLGKEVAEVTATERRNAKAINFGLLYGMSAFGLAK 826 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL++ RSEA DYI YF R+PG+ +Y+ T+ ++GY+ETI GR+++ +IN + Sbjct: 827 QLQMSRSEAQDYIDMYFERYPGVKDYMINTRASAYEHGYIETILGRKLYTPDINHSNRMV 886 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 + ERAAINAP+QGSAAD+ + AMI+V K L K KMLLQ+HDELVFEV +++ Sbjct: 887 KQGAERAAINAPLQGSAADLIKLAMIAVDKVLP--KEQAKMLLQVHDELVFEVDADKVDE 944 Query: 940 ASQIIVHSMEKACLP-------KINLRVPLKVNIKVSNNWQE 974 SQ+I ++M+ +N VPL V NW E Sbjct: 945 ISQLITNAMQDVLTATAVEKGWNVNFAVPLLVETDSGQNWDE 986 >gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1] gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1] Length = 922 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 366/993 (36%), Positives = 539/993 (54%), Gaps = 102/993 (10%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRA+YA P L+ G A+ G NML LL SR + SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYQP--SHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRN++Y +YKA RP +P+ L Q+ PL R+ A G+P I I G EADD+I T Sbjct: 62 FDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IHALGLPLISIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +E AV I + DKD+ QLV L +T+ + + + V K+G+ P++++ Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPDEVAAKYGVGPDRIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GD DNIPG+PG+G KTA +L G++ N+L ++ K I E A Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAAPEKVSDLGFRGAKTMAAKITENA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK-----LINRVATTY 292 + RLS +L ++TDV + L + + LI +EF + L N+ TT Sbjct: 241 DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYSEMEFKRWLAEVLDNKAPTTV 300 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 DAA +E +Q SS+ + Sbjct: 301 VADAAKVE----------------------------TQESSMPN---------------- 316 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 P Y I+ + +W+ KL+ + T ++D ++ + + Sbjct: 317 ---------PALETQYDTILTETQLDEWIAKLKQASLIAVDTETTSLDYMVAELVGM--- 364 Query: 413 TLDQKDDTSFKVET---IFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGH 467 SF VE ++ L+ D G L K+ L L+ E++ K+G Sbjct: 365 --------SFAVEAGKAAYLPLA----HDYVGAPQQLDKQFALEKLRPILEDDKVKKVGQ 412 Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 N+KYD VL GI ++G D ML SYV +S S HD+ +A K+L + ++I Sbjct: 413 NLKYDISVLANAGIKLQGVVFDTMLESYVFNSVASRHDMDGLALKYLGHKNIGFEDIAGK 472 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQ 582 + ++I +A E++++ L+L L P+L E +L V+ ++ P+I V+S Sbjct: 473 GAKQLTFNQIPLEVAAPYAAEDADITLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSD 532 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +E G+ ID LL Q S E+++ + +LEE Y+++GEKFNL SPKQL + F KL +P Sbjct: 533 IERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIAGEKFNLGSPKQLQVLFFEKLGYPIT 592 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KT G T + L ++ D P+ K ILE R LSK+KSTY D LP +N +T RVHT Sbjct: 593 KKTPKGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTS 651 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A+ TGRL+S EPNLQNIPI+T+ G++IR+AFI+P +K+++ADYSQIELRI+AH++ Sbjct: 652 YHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLS 711 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L + F DIHR AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL Sbjct: 712 QDAGLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLD 771 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IPR+EA YI YF R+PG+ Y+E+T+ + GYV T+FGRR++ EI + R Sbjct: 772 IPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQG 831 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTAS 941 ERAAINAP+QG+AADI ++AMI++ + ++ + + M++Q+HDELVFEV ++ T Sbjct: 832 AERAAINAPMQGTAADIIKKAMINIAQWIKTETQGEIAMIMQVHDELVFEVDADKAETLK 891 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q + M KA + L V L + +NW E Sbjct: 892 QKVCELMAKAAI----LDVALLAEAGIGDNWDE 920 >gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1] Length = 959 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 366/989 (37%), Positives = 551/989 (55%), Gaps = 85/989 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGS +++R F+ P LS GLP NAI G N L KL+ K+ +H AV FD Sbjct: 33 VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 87 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ + YKA+RP + E L Q+P + + GI I+I GFEADDII T Y Sbjct: 88 TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 147 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G V I + DKD+ QLV+ L D+ + D VI+K+G+ E++ AL Sbjct: 148 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 207 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I GIP +G KTAA LL EY N++ IL N + IK + +I + ++ L+R L Sbjct: 208 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 266 Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300 + T++ +TI + + L+ P L + + LEF K + + A + Sbjct: 267 ATIVTNLKLTISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 321 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + +K ++I+ D T+ S QTP Sbjct: 322 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 344 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418 PI + SY I +D + + KL + F I T+T D H+K + I++ST D Sbjct: 345 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 399 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E +I + D N L + +LS K EN + KIG ++KYD + Sbjct: 400 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 454 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533 +YGI++ ++ D ML SYV+++ + H + ++A+ +L + T +++ + DK+ Sbjct: 455 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 514 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + ++A E++++ +L+ + +K + L+ P +++QME GI ID Sbjct: 515 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 574 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L Q+S E K +++L+ ++ E FNL+SPKQLG+ILF KL G KTKTGQ+ T Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L +I ++P+I +LE R LSK+KSTY D+L N +++ RVHT Y A T TGR Sbjct: 635 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 690 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+TD G+ IR AFI+P + +++ADYSQIELR++AH + L + F Sbjct: 691 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 750 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 ++LDIH AAEI G +I +V+P RR AK +NF ++YG+S F LA Q+ + R+ A DYI Sbjct: 751 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIGVDRAVAQDYI 810 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 KRYF R+P I EY+E+TK +Q GYV+TI GR+++ +I S I++ ERAAINAP+ Sbjct: 811 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 870 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAA+I + AMI+V + L K K+LLQ+HDELVFEV ++ +I +M+ A Sbjct: 871 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 928 Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974 ++ VPL V I + NW++ Sbjct: 929 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 957 >gi|332764614|gb|EGJ94846.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Shigella flexneri 2930-71] Length = 884 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 343/927 (37%), Positives = 525/927 (56%), Gaps = 67/927 (7%) Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H AV+FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EAD Sbjct: 12 THAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEAD 71 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+I T AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE Sbjct: 72 DVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPEL 131 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRREN 232 ++ AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K Sbjct: 132 IIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAK 191 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 + + E A LS +L ++TDV + + E L ++ L+ K EF + T Sbjct: 192 LEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRW------TA 245 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 D + + KG T Q +S++D+ ++ + Sbjct: 246 DVEVGKW---------LQAKGA---------KTAAKPQETSVADEAPEVTATV------- 280 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + Sbjct: 281 ----------ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA 330 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 ++ V ++D S + L LK E+E LK+G N+KYD Sbjct: 331 -IEPGVAAYIPVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYD 380 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528 + +L YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + Sbjct: 381 RGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQL 440 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITG 587 ++I+ + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G Sbjct: 441 TFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNG 500 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 ++ID +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT Sbjct: 501 VKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPG 560 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T+ + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A Sbjct: 561 GAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV 619 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L Sbjct: 620 TATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL 679 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR E Sbjct: 680 LTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKE 739 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A Y+ YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAA Sbjct: 740 AQKYMDLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAA 799 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H Sbjct: 800 INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQ 858 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 + + C L VPL V + NW + Sbjct: 859 LMENC---TRLDVPLLVEVGSGENWDQ 882 >gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185] gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185] Length = 935 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 363/989 (36%), Positives = 540/989 (54%), Gaps = 93/989 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA+YA P L+ G A+ G NML LL + SH AV Sbjct: 20 KNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLTRYQP----SHIAV 74 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFRN++Y +YKA RP +P+ L Q+ PL R+ +A G+P I I G EADD+I Sbjct: 75 VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IRALGLPLISISGVEADDVIG 133 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A E AV I + DKD+ QLV L +T+ + + E V K+G+ P++++ L Sbjct: 134 TIARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDL 193 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GD DNIPG+PG+G KTA +L G++ N+L ++ + K I+E Sbjct: 194 LALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIEN 253 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A+ +LS +L ++TDV + L ++ + LI +EF + + V Sbjct: 254 ADMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAEV-------- 305 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 LD T N I +E D+T +++ Q Sbjct: 306 -------LDNKITANTSIDAASETQEDST----PVEAIATQ------------------- 335 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 Y I+ ++ W+ KL+ + T ++D ++ + I Sbjct: 336 -----------YDCILTEAELDAWIAKLKKANLMAVDTETTSLDYMVAELVGI------- 377 Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNT-LTKEI-LSYLKKFFENEHFLKIGHNIKY 471 SF VE ++ L+ D G T + K + L L+ E+ K+G N+KY Sbjct: 378 ----SFAVEAGKAAYLPLT----HDYVGAPTQIDKTVALEKLRPLLEDPKLKKVGQNLKY 429 Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527 D +L GI ++G D ML SYV +S S HD+ +A K+L + + +EI Sbjct: 430 DISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQ 489 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586 + ++I +A E++++ L+L L P+L E +L ++ ++ P+I V+S +E Sbjct: 490 LTFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQ 549 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G+ ID LL Q S E+++ + +LEE YD++GEKFNL SPKQL + F KL +P KT Sbjct: 550 GVLIDSMLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTP 609 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 G T + L ++ D P+ K ILE R LSK+KSTY D LP +N +T RVHT Y A Sbjct: 610 KGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQA 668 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 + TGRL+S EPNLQNIPI+T+ G++IR+AFI+P +K+++ADYSQIELRI+AH+++ Sbjct: 669 NAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 728 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F DIHR AAE+FG + ++V+ + RR AK +NF +IYG+S F LA QL IPR Sbjct: 729 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 788 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA YI YF R+PG+ Y+E+T+ GYV T+FGRR++ EI + R ERA Sbjct: 789 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 848 Query: 887 AINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAP+QG+AADI ++AMI++ + ++ + + M++Q+HDELVFEV ++ + I Sbjct: 849 AINAPMQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTIC 908 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M +A +L V L + NNW E Sbjct: 909 TLMAQAA----DLDVELLAEAGIGNNWDE 933 >gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70] gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70] Length = 930 Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust. Identities = 370/987 (37%), Positives = 552/987 (55%), Gaps = 80/987 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRAF+A P L+ + P A+ G NML L+ + SH AV Sbjct: 6 ENPLVLVDGSSYLYRAFHAFPPLTNSLNE-PTGAMYGVLNMLKSLISQVQP----SHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ-LPLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFR+EI+ YK++RP +PE L Q LPL + +A GIP + ++G EADD+I Sbjct: 61 VFDAKGKTFRDEIFEQYKSHRPPMPEELRSQILPLHNI-IRALGIPLLVVEGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A + G V I + DKD+ QLV L +T+ +D E V++K+G+PPE ++ Sbjct: 120 TLAVQASRAGKKVLISTGDKDMAQLVDENIMLINTMTNTLLDREGVLEKYGLPPELIIDY 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEY 236 AL GDS DNIPGIPG+G KTA LLQ G++ I N ++ R + E Sbjct: 180 LALMGDSSDNIPGIPGVGEKTALGLLQGIGSMAEIYANLDKVASLSLRGAKTLGAKLAEA 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + A LS L ++TDV + + E L N LI + EF + +N V Sbjct: 240 KDLADLSYLLATIKTDVALDVSPEQLTFGVANKDALIEYFARYEFKRWLNEV-------- 291 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERL 355 +N E S ++ S+Q KIN Q TP ER Sbjct: 292 ---------MNGGE------------------SSVTNGSEQAVKINPYQATPSTN--ERE 322 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +S I+ Y ++ ++++W+ KL + TD++D + + ++ + + Sbjct: 323 NTVS-VQIDRSQYQCLLELSELKRWIDKLNQAKCIAIDTETDSLDYMVAHLVGVSFALEN 381 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 E ++ L D G + + LS LK EN K+G NIKYD Sbjct: 382 G--------EAAYLPLR----HDYLGAPQQVDFQTALSLLKPVLENPEIHKVGQNIKYDL 429 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 + R+GI ++G D ML+SYVLDS GR H++ +A+++L + ++I K+ + Sbjct: 430 SIFARHGIEVQGVSYDTMLLSYVLDSTGR--HNMDELAKRYLGHQTIHFEDIAGKGKAQL 487 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587 ++I Q E+A E++++ ++L +L K+ + +L+ +Y+ ++ P+ V+S++E G Sbjct: 488 TFNQIPLEQAAEYAAEDADITMKLQQVLWEKVAAQPELVKLYQTMELPLASVLSRIERHG 547 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + ID D L S +I L +LE+ Y+L+G++FNL+S KQL +ILF KL P KT Sbjct: 548 VLIDSDALFSQSQQIGVRLTALEQQAYELAGQQFNLASTKQLQEILFDKLSLPVLKKTPK 607 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + LE++ ++ + K ++E R LSK+KSTY D LP +NK T RVHT Y A Sbjct: 608 GAPSTNEEVLEEL-AYEHALPKILVEHRGLSKLKSTYTDKLPLMVNKDTGRVHTSYHQAV 666 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIPI+ + G++IR+AFI+P ++++ADYSQIELRI+AH+++ L Sbjct: 667 TATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAHLSQDKGL 726 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F DIHR AAEIFG+ + +VS + RR AK INF +IYG+S F L+ QL IPR E Sbjct: 727 INAFNEGKDIHRSTAAEIFGIPLAQVSSEQRRSAKAINFGLIYGMSSFGLSRQLGIPRHE 786 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A Y+ YF R+PG+ ++ + + GYV T+F RR++ +I S + R ER A Sbjct: 787 AQKYMDLYFQRYPGVQAFMHDIRETAKAQGYVTTLFDRRLYLPDIQSSNAIRRKAAERVA 846 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AADI +RAMI++ + + KM++Q+HDELVFEV ++I II + Sbjct: 847 INAPMQGTAADIIKRAMITLDREIAGQP-DIKMIMQVHDELVFEVRTDKIEHFRTIIKTT 905 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME+A L VPL V++ V NW E Sbjct: 906 MEQAA----QLVVPLIVDVGVGKNWDE 928 >gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202] gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202] Length = 950 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 371/1002 (37%), Positives = 562/1002 (56%), Gaps = 92/1002 (9%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ K +G P A+ G NML L+ SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLIAQVE----PSHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP I I+G EADD+I T Sbjct: 62 FDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A K+G V I + DKD+ QLV+ L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 AVQAAKDGKDVLISTGDKDMAQLVNEHIMLINTMTNTLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G+++ I N ++++ R + E Sbjct: 182 LRGDSSDNIPGVKGVGEKTALALLQGIGSIQTIYQNLDKVEELSFRGAKTFAPKLEAEKE 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + L N L++ EF K ++ V AN Sbjct: 242 MADLSYLLATIKTDVELEFRHDQLTTSPQNHDELVALFSQYEFKKWLSEVK-----GGAN 296 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 PV +TE +KT + T + +E T K+ ++R Sbjct: 297 --PVT-------------QTE-----KVKTPNAYEV---TQVVQNEPTFAKVDIDR---- 329 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS------ 412 Y I T + +W++K++ + TD++D+ + + ++++ Sbjct: 330 -------SKYETITETVALNRWLEKMQAEKCIALDTETDSLDSMSANLVGVSLALANGEA 382 Query: 413 -------------TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFE 458 + +Q D + ++ET+ +L+ KN L + L+ LK E Sbjct: 383 CYIPLVHKTLVTTSAEQGDLFANEMETVGYELA---------KNQLNLTVCLAQLKPILE 433 Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYT 516 N KIG NIKYD V +GI+++G D ML SY L+S GR H++ +A+++L + Sbjct: 434 NPEIKKIGQNIKYDLTVFANHGINVQGVAFDTMLESYTLNSTGR--HNMDDLAERYLGHK 491 Query: 517 RKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERL 572 E I K+ + D+I S E+A E+++V ++L +L +L E L+ +++ + Sbjct: 492 TIEFEAIAGKGKNQLTFDQIEISTAAEYAAEDADVTMKLHQVLWSQLAQEPALVKLFDEI 551 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 + P++ V+S++E G+ ID LKQ S+EI + L LE+ ++ +G FNL+S KQL +I Sbjct: 552 ELPLVSVLSRIERNGVLIDPAKLKQQSSEIERRLAELEQEVHSEAGSVFNLASTKQLQEI 611 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 LF KL P KT G T + LE++ + + K ++E R LSK+KSTY D LP I Sbjct: 612 LFEKLGLPILKKTPKGAASTNEEVLEELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLMI 671 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752 N +T RVHT Y A T TGRL+S +PNLQNIPI+ + G++IR+AFI+ K+++ADYSQ Sbjct: 672 NAKTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQ 731 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELRI+AH+A + + F DIHR A+EIFGV +++V+ + RR+AK INF +IYG+ Sbjct: 732 IELRIMAHLANDKGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIYGM 791 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S F L+ QL I R++A Y++ YF+R+P + +++ K + GYVET+ GRR++ EI Sbjct: 792 SEFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAAEKGYVETLLGRRLYLPEI 851 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 S + R ER AINAP+QG+AADI + AMI + + ++ H KM++Q+HDELVFEV Sbjct: 852 KSSNAMRRKAAERVAINAPMQGTAADIIKIAMIGIDRVIQ-HSDEIKMIMQVHDELVFEV 910 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+++ S +I MEKA I L VPL + V +NW E Sbjct: 911 KEDKVEHYSAVIKAEMEKA----IQLNVPLIAEVGVGDNWDE 948 >gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E] gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E] Length = 965 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 372/998 (37%), Positives = 546/998 (54%), Gaps = 76/998 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + SH AV Sbjct: 15 QNPLVLVDGSSYLYRAFHAFPPLTNSL-GEPTGAMFGVLNMLKSLITQVQ----PSHIAV 69 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + I+G EADD+I T Sbjct: 70 VFDAKGKTFRDELFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLSIEGVEADDVIGT 129 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 130 LALQASSAGKKVLISTGDKDMAQLVDDNIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 189 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GDS DNIPGI G+G KTA LLQ G++ I N ++ KK E + Sbjct: 190 ALMGDSSDNIPGISGVGEKTALGLLQGIGSMAEIYANLDKVADLPIRGAKKLGEKLAAAK 249 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A LS L ++TDV + + E LI+ N LI + EF + +N +A Sbjct: 250 ADADLSYVLATIKTDVELDLNPEQLIIGTANKDELIEYFARYEFKRWLN--------EAL 301 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N E S + +Q KIN+ Q L + Sbjct: 302 NDE----------------------------SSVTKPQEQAVKINNYQATPALAKQESAV 333 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST---- 413 + I+ Y + N +QQW++K+ + + T+ +D ++ + I+ + Sbjct: 334 KNSVKIDRTLYETVDNQAKLQQWIEKIRQVKLVAVDTETNALDPMLAELVGISFALENGE 393 Query: 414 -----LDQKDDTSFKVETIFIDLSVHTSQDSTGK-----NTLTK-EILSYLKKFFENEHF 462 L + + E DL + Q S + L K E LS LK EN Sbjct: 394 ACYIPLAHVHQVAAQAENAQGDLFAESEQSSESRWEPVVGQLNKAECLSQLKPLLENPEI 453 Query: 463 LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY---TR 517 KIG NIKYD + GI+M+G D ML SYVL+S GR H++ +A+++L + Sbjct: 454 KKIGQNIKYDLTIFANNGINMQGVTFDTMLESYVLNSTGR--HNMDDLAERYLGHHTIAF 511 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL-WLLLRPKLIVEKLLHVYERLDKPM 576 ++I K+ + D+I + E+A E+++V ++L L R +L+ +Y+ ++ P+ Sbjct: 512 EDIAGKGKNQLTFDQIELKKAAEYAAEDADVTMKLHQTLWREVAQSPELVKLYQEMELPL 571 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 + V+S++E G+ ID L S E S+ L +LE ++L+G+ FNL+S KQL +ILF K Sbjct: 572 VSVLSRIERNGVLIDSRALLAQSKEFSQKLTALENKAHELAGQHFNLASTKQLQEILFDK 631 Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 L P KT G T + LE++ ++ + K ++E R LSK+KSTY D LP +N++T Sbjct: 632 LGLPVLKKTPKGAPSTNEEVLEEL-AYEHELPKLLVEHRGLSKLKSTYTDKLPQMVNRKT 690 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 RVHT Y A T TGRL+S +PNLQNIP++ + G++IR+AFI+ K+I+ADYSQIELR Sbjct: 691 GRVHTSYHQAVTATGRLSSSDPNLQNIPVRNEEGRRIRQAFIARKGFKVIAADYSQIELR 750 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 I+AH++ L F DIHR AAEIFG+ +E V+ + RR AK INF +IYG+S F Sbjct: 751 IMAHLSADKGLTAAFSEGKDIHRSTAAEIFGLALENVTAEQRRSAKAINFGLIYGMSSFG 810 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ QL I R +A Y+ YF R+PG+ ++ + + GYVET+FGRR++ +I S Sbjct: 811 LSRQLGIARGDAQRYMDLYFQRYPGVQTFMTNIREKAKSQGYVETLFGRRLYLPDIQSAN 870 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 + R ER AINAP+QG+AADI +RAMI + K++ D M++Q+HDELVFEV E++ Sbjct: 871 AMRRKAAERVAINAPMQGTAADIIKRAMIDIDKAITDDP-DILMIMQVHDELVFEVKEDK 929 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I S +I ME A L VPL V++ V +NW E Sbjct: 930 IEHYSALIKSLMENAA----QLHVPLIVDVGVGDNWDE 963 >gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195] gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195] gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678] Length = 921 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 363/989 (36%), Positives = 540/989 (54%), Gaps = 93/989 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA+YA P L+ G A+ G NML LL + SH AV Sbjct: 6 KNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLTRYQP----SHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFRN++Y +YKA RP +P+ L Q+ PL R+ +A G+P I I G EADD+I Sbjct: 61 VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IRALGLPLISISGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A E AV I + DKD+ QLV L +T+ + + E V K+G+ P++++ L Sbjct: 120 TIARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDL 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GD DNIPG+PG+G KTA +L G++ N+L ++ + K I+E Sbjct: 180 LALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIEN 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A+ +LS +L ++TDV + L ++ + LI +EF + + V Sbjct: 240 ADMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAEV-------- 291 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 LD T N I +E D+T +++ Q Sbjct: 292 -------LDNKITANTSIDAASETQEDST----PVEAIATQ------------------- 321 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 Y I+ ++ W+ KL+ + T ++D ++ + I Sbjct: 322 -----------YDCILTEAELDAWIAKLKEADLMAVDTETTSLDYMVAELVGI------- 363 Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNT-LTKEI-LSYLKKFFENEHFLKIGHNIKY 471 SF VE ++ L+ D G T + K + L L+ E+ K+G N+KY Sbjct: 364 ----SFAVEAGKAAYLPLT----HDYVGAPTQIDKTVALEKLRPLLEDPKLKKVGQNLKY 415 Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527 D +L GI ++G D ML SYV +S S HD+ +A K+L + + +EI Sbjct: 416 DISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQ 475 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586 + ++I +A E++++ L+L L P+L E +L ++ ++ P+I V+S +E Sbjct: 476 LTFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQ 535 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G+ ID LL Q S E+++ + +LEE YD++GEKFNL SPKQL + F KL +P KT Sbjct: 536 GVLIDSMLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTP 595 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 G T + L ++ D P+ K ILE R LSK+KSTY D LP +N +T RVHT Y A Sbjct: 596 KGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTNYHQA 654 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 + TGRL+S EPNLQNIPI+T+ G++IR+AFI+P +K+++ADYSQIELRI+AH+++ Sbjct: 655 NAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F DIHR AAE+FG + ++V+ + RR AK +NF +IYG+S F LA QL IPR Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA YI YF R+PG+ Y+E+T+ GYV T+FGRR++ EI + R ERA Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834 Query: 887 AINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAP+QG+AADI ++AMI++ + ++ + + M++Q+HDELVFEV ++ + I Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTIC 894 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M +A +L V L + NNW E Sbjct: 895 TLMAQAA----DLDVELLAEAGIGNNWDE 919 >gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] Length = 932 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 373/986 (37%), Positives = 547/986 (55%), Gaps = 78/986 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + I+G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDIIRALGIPLLVIEGVEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A K V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 AVEASKANQKVLISTGDKDMAQLVDDNIMLINTMNNTLLDREAVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK + +L E Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLDKVAELPIRGAKKLGDKLLAEKE 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++TDV + I E L L N +L + EF + +N V D N Sbjct: 242 MADLSYRLATIKTDVALDITPEQLTLGASNNDQLTEYFGRYEFKRWLNEVMNGADSITNN 301 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERLQK 357 ++Q +KIN Q TP + Sbjct: 302 ------------------------------------NEQPTKINHYQATPALAQNNDDEA 325 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 L I+ Y ++ D+ +WV+KL+ + T+ +D + + I+ + + Sbjct: 326 LPAIQIDRSRYETLLTEADLNRWVEKLKQAKLFALDTETNNLDYMAANLVGISFALENG- 384 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLV 475 E ++ L + D G TL K L+ LK EN K+G N KYD + Sbjct: 385 -------EAAYLPLQL----DYLGAPKTLEKTTALALLKPVLENPAIQKVGQNFKYDLTI 433 Query: 476 LHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 R GI ++G D ML SYVL+S GR H++ +A+++L + T +EI K+ + Sbjct: 434 FARNGIDVQGVAFDTMLESYVLNSTGR--HNMDDLAKRYLGHQTITFEEIAGKGKNQLTF 491 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQ 589 ++I + E+A E+++V ++L +L KL E L +++ ++ P++ V+S+ME G+ Sbjct: 492 NQIPLEKAAEYAAEDADVTMKLQQVLWEKLSKEPTLEKLFKEMELPLLGVLSRMERRGVL 551 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID D L S EI+ L LEE Y L+G+ FNL+S KQL +ILF KL P KT G Sbjct: 552 IDSDALFLQSNEIANRLSELEEQAYVLAGQPFNLASTKQLQEILFDKLGLPVIQKTPKGA 611 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + LE++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T Sbjct: 612 PSTNEEVLEEL-AFSHELPKVLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSYHQAVTA 670 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH+++ L Sbjct: 671 TGRLSSSDPNLQNIPIRNEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLIN 730 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIHR AAEIFGV +++V+ + RR+AK INF +IYG+S F L+ QL I R++A Sbjct: 731 AFTQGKDIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGIGRADAQ 790 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 Y+ YF R+PG+ ++ + + GYVET+FGRR++ +INS R ER AIN Sbjct: 791 SYMDLYFKRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPDINSSNGMRRKAAERVAIN 850 Query: 890 APIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 AP+QG+AADI +RAMI + + L+ D +A M++Q+HDELVFEV E++ S++I M Sbjct: 851 APMQGTAADIIKRAMIQLDQKLQNDPDIA--MIMQVHDELVFEVRSEKVEFYSKLIKTHM 908 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A +L VPL V++ NW E Sbjct: 909 ESAA----DLVVPLIVDVGQGTNWDE 930 >gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21] gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21] Length = 892 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 344/976 (35%), Positives = 545/976 (55%), Gaps = 101/976 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+DGSS+IYRA++A LS +G P NA+ GF ML K++ K+ +H AVIFD Sbjct: 8 LYLLDGSSYIYRAYFAIRHLSSP-NGFPTNALYGFTQMLLKVM----KDRAPAHVAVIFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +TFRNE++P YKA R +PE L Q+ ++ +AF IPA+E+ GFEADDII T Sbjct: 63 AGKITFRNELFPAYKATRSAMPEDLAQQIEPIKQMVRAFNIPALELPGFEADDIIGTIAR 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 E +G A +++ DKDLMQ+VS L DT+KE+ I V +K+G+ PE++V + AL Sbjct: 123 KCEAQGMACVVVTGDKDLMQIVSDRVTLLDTMKEKSFGIAEVYEKFGVAPERVVDVLALW 182 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPG+PGIG TA LLQE+G+L+ +L A +K K E ++E+A+ ARL R L Sbjct: 183 GDASDNIPGVPGIGEVTAKKLLQEFGSLDELLARAGEVKGKNG-ERLVEFADQARLCRTL 241 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + DCN P Y D + P Sbjct: 242 ATI----------------DCNVP-------------------IEYSIDDFAVTP----- 261 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP-INN 365 +N+ +A + F++L L+ L+ P ++ Sbjct: 262 --PDNRRLA--------ALFREYGFATL--------------------LKDLTSSPTLSC 291 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 D Y+ ++ +++++ +LE + + + T +++ ++ + A S E Sbjct: 292 DRYSLVLTEEELRRVAAELEAAPAFAIDLETTSLNPREARVVGYAASCRPH--------E 343 Query: 426 TIFIDLS-VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 +I + + +L EIL L K + KIG N+KYD VL G + Sbjct: 344 AWYIPVGHRYLGAPEQLPESLVLEILGPLLK---DPARRKIGQNLKYDYQVLRIAGFELE 400 Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540 G + D ML +Y+++ R+S + ++A ++L + + E+ +S K + ++ + Sbjct: 401 GIWCDTMLAAYLVNPARNSQGLDALALEYLDHRMISYAEVARSGKCELNFSEVDLDRAGP 460 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 ++ E+++ L +L PK+ + + + L+ P++ +++ ME+ G+++D DL+K++S Sbjct: 461 YSCEDADATYLLHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELST 520 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK--TGQWKTTAQDLE 658 K L+ LE I++ G FN++SPKQLG++LF ++ G KTK TG W T ++LE Sbjct: 521 GFGKQLIELEAQIHEHCGGPFNINSPKQLGEMLFERMGLAVGKKTKGKTG-WSTNVEELE 579 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ ++ + + +L++R +SK+KSTY D+LP + T RVHT Y+ A T TGRL+S +P Sbjct: 580 RL-AEEHEVARLLLQYRSISKLKSTYTDALPKLVAPATGRVHTSYNQAVTSTGRLSSSDP 638 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+ + G+ IRRAFI+ P ++SADYSQIELR+LAH++ L + F DIH Sbjct: 639 NLQNIPIRGEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLSGDRVLCEAFAAGEDIH 698 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R A+E+FG+ E V+ +MRR AK INF +IYG F LA +L + +A +I YF R Sbjct: 699 RRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGAFSLAKELGVTPKQAKAFIDSYFER 758 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 G +++ G+V TI GRR+ EI S ++R +R A+N PIQGSAAD Sbjct: 759 HSGARSFLDSCIREAEVCGFVTTIMGRRLCIPEIASKNGNVRAFAQRNAVNYPIQGSAAD 818 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I + AM+ V++ +++ ++A+++++Q+HDEL+FEVPE E +++ ME A LP L Sbjct: 819 IIKAAMLRVNRRMQEERVASRLIMQVHDELIFEVPEGERDLMEELVRTEME-AALP---L 874 Query: 959 RVPLKVNIKVSNNWQE 974 VPLKV++ NW E Sbjct: 875 SVPLKVDLNFGLNWSE 890 >gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200] Length = 922 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 366/993 (36%), Positives = 539/993 (54%), Gaps = 102/993 (10%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRA+YA P L+ G A+ G NML LL SR + SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYQP--SHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRN++Y +YKA RP +P+ L Q+ PL R+ A G+P I I G EADD+I T Sbjct: 62 FDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IHALGLPLISIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +E AV I + DKD+ QLV L +T+ + + + V K+G+ P++++ Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPDEVAAKYGVGPDRIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GD DNIPG+PG+G KTA +L G++ N+L + K I+E A Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAAPENVSDLGFRGAKTMAAKIIENA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK-----LINRVATTY 292 + RLS +L ++TDV + L + + LI +EF + L N+ TT Sbjct: 241 DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYSEMEFKRWLAEVLDNKAPTTV 300 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 DAA +E +Q SS+ + Sbjct: 301 VADAAKVE----------------------------TQESSMPN---------------- 316 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 P Y I+ + +W+ KL+ + T ++D ++ + + Sbjct: 317 ---------PALETQYDTILTEAQLDEWIAKLKQASLIAVDTETTSLDYMVAELVGM--- 364 Query: 413 TLDQKDDTSFKVET---IFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGH 467 SF VE ++ L+ D G L K+ L L+ E++ K+G Sbjct: 365 --------SFAVEAGKAAYLPLA----HDYVGAPQQLDKQFALEKLRPILEDDKVKKVGQ 412 Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 N+KYD VL GI ++G D ML SYV +S S HD+ +A K+L + ++I Sbjct: 413 NLKYDISVLANAGIKLQGVVFDTMLESYVFNSVASRHDMDGLALKYLGHKNIGFEDIAGK 472 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQ 582 + ++I +A E++++ L+L L P+L E +L V+ ++ P+I V+S Sbjct: 473 GAKQLTFNQIPLEVAAPYAAEDADITLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSD 532 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +E G+ ID LL Q S E+++ + +LEE Y+++GEKFNL SPKQL + F KL +P Sbjct: 533 IERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIAGEKFNLGSPKQLQVLFFEKLGYPIT 592 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KT G T + L ++ D P+ K ILE R LSK+KSTY D LP +N +T RVHT Sbjct: 593 KKTPKGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTS 651 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A+ TGRL+S EPNLQNIPI+T+ G++IR+AFI+P +K+++ADYSQIELRI+AH++ Sbjct: 652 YHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLS 711 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L + F DIHR AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL Sbjct: 712 QDAGLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLD 771 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IPR+EA YI YF R+PG+ Y+E+T+ + GYV T+FGRR++ EI + R Sbjct: 772 IPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQG 831 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTAS 941 ERAAINAP+QG+AADI ++AMI++ + ++ + + M++Q+HDELVFEV ++ T Sbjct: 832 AERAAINAPMQGTAADIIKKAMINIAQWIKTETQGEIAMIMQVHDELVFEVDADKAETLK 891 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q + M KA + L V L + +NW E Sbjct: 892 QKVCELMAKAAI----LDVALLAEAGIGDNWDE 920 >gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4] gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4] Length = 959 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 365/989 (36%), Positives = 549/989 (55%), Gaps = 85/989 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGS +++R F+ P LS GLP NAI G N L KL+ K+ +H AV FD Sbjct: 33 VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 87 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ + YKA+RP + E L Q+P + + GI I+I GFEADDII T Y Sbjct: 88 TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 147 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G V I + DKD+ QLV+ L D+ + D VI+K+G+ E++ AL Sbjct: 148 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 207 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I GIP +G KTAA LL EY N++ IL N + IK + +I + ++ L+R L Sbjct: 208 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 266 Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300 + T++ + I + + L+ P L + + LEF K + + A + Sbjct: 267 ATIVTNLKLAISFDDITLDHSQETTIERAPALYALFEELEFKKEMAQTAELLNLP----- 321 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + +K ++I+ D T+ S QTP Sbjct: 322 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 344 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418 PI + SY I +D + + KL + F I T+T D H+K + I++ST D Sbjct: 345 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 399 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E +I + D N L +LS K EN + KIG ++KYD + Sbjct: 400 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 454 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533 +YGI++ ++ D ML SYV+++ + H + ++A+ +L + T +++ + DK+ Sbjct: 455 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 514 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + ++A E++++ +L+ + +K + L+ P +++QME GI ID Sbjct: 515 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 574 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L Q+S E K +++L+ ++ E FNL+SPKQLG+ILF KL G KTKTGQ+ T Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L +I ++P+I +LE R LSK+KSTY D+L N +++ RVHT Y A T TGR Sbjct: 635 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 690 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+TD G+ IR AFI+P + +++ADYSQIELR++AH + L + F Sbjct: 691 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 750 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 ++LDIH AAEI G +I +V+P RR AK +NF ++YG+S F LA Q+ + R+ A DYI Sbjct: 751 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 810 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 KRYF R+P I EY+E+TK +Q GYV+TI GR+++ +I S I++ ERAAINAP+ Sbjct: 811 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 870 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAA+I + AMI+V + L K K+LLQ+HDELVFEV ++ +I +M+ A Sbjct: 871 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 928 Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974 ++ VPL V I + NW++ Sbjct: 929 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 957 >gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155] gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155] Length = 921 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 363/989 (36%), Positives = 540/989 (54%), Gaps = 93/989 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA+YA P L+ G A+ G NML LL + SH AV Sbjct: 6 KNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLTRYQP----SHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFRN++Y +YKA RP +P+ L Q+ PL R+ +A G+P I I G EADD+I Sbjct: 61 VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IRALGLPLISISGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A E AV I + DKD+ QLV L +T+ + + E V K+G+ P++++ L Sbjct: 120 TIARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDL 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GD DNIPG+PG+G KTA +L G++ N+L ++ + K I+E Sbjct: 180 LALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIEN 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A+ +LS +L ++TDV + L ++ + LI +EF + + V Sbjct: 240 ADMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAEV-------- 291 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 LD T N I +E D+T +++ Q Sbjct: 292 -------LDNKITANTPIDAASETQEDST----PVEAIATQ------------------- 321 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 Y I+ ++ W+ KL+ + T ++D ++ + I Sbjct: 322 -----------YDCILTEAELDAWIAKLKEADLMAVDTETTSLDYMVAELVGI------- 363 Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNT-LTKEI-LSYLKKFFENEHFLKIGHNIKY 471 SF VE ++ L+ D G T + K + L L+ E+ K+G N+KY Sbjct: 364 ----SFAVEAGKAAYLPLT----HDYVGAPTQINKTVALEKLRPLLEDPKLKKVGQNLKY 415 Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527 D +L GI ++G D ML SYV +S S HD+ +A K+L + + +EI Sbjct: 416 DISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQ 475 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586 + ++I +A E++++ L+L L P+L E +L ++ ++ P+I V+S +E Sbjct: 476 LTFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQ 535 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G+ ID LL Q S E+++ + +LEE YD++GEKFNL SPKQL + F KL +P KT Sbjct: 536 GVLIDSMLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTP 595 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 G T + L ++ D P+ K ILE R LSK+KSTY D LP +N +T RVHT Y A Sbjct: 596 KGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQA 654 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 + TGRL+S EPNLQNIPI+T+ G++IR+AFI+P +K+++ADYSQIELRI+AH+++ Sbjct: 655 NAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F DIHR AAE+FG + ++V+ + RR AK +NF +IYG+S F LA QL IPR Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA YI YF R+PG+ Y+E+T+ GYV T+FGRR++ EI + R ERA Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834 Query: 887 AINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAP+QG+AADI ++AMI++ + ++ + + M++Q+HDELVFEV ++ + I Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTIC 894 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M +A +L V L + NNW E Sbjct: 895 TLMAQAA----DLDVELLAEAGIGNNWDE 919 >gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223] gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223] Length = 921 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 363/989 (36%), Positives = 540/989 (54%), Gaps = 93/989 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA+YA P L+ G A+ G NML LL + SH AV Sbjct: 6 KNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLTRYQP----SHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFRN++Y +YKA RP +P+ L Q+ PL R+ +A G+P I I G EADD+I Sbjct: 61 VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IRALGLPLISISGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A E AV I + DKD+ QLV L +T+ + + E V K+G+ P++++ L Sbjct: 120 TIARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDL 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GD DNIPG+PG+G KTA +L G++ N+L ++ + K I+E Sbjct: 180 LALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIEN 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A+ +LS +L ++TDV + L ++ + LI +EF + + V Sbjct: 240 ADMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAEV-------- 291 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 LD T N I +E D+T +++ Q Sbjct: 292 -------LDNKITANTPIDAASETQEDST----PVEAIATQ------------------- 321 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 Y I+ ++ W+ KL+ + T ++D ++ + I Sbjct: 322 -----------YDCILTEAELDAWIAKLKQADLMAVDTETTSLDYMVAELVGI------- 363 Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNT-LTKEI-LSYLKKFFENEHFLKIGHNIKY 471 SF VE ++ L+ D G T + K + L L+ E+ K+G N+KY Sbjct: 364 ----SFAVEAGKAAYLPLT----HDYVGAPTQIDKTVALEKLRPLLEDPKLKKVGQNLKY 415 Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527 D +L GI ++G D ML SYV +S S HD+ +A K+L + + +EI Sbjct: 416 DISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQ 475 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586 + ++I +A E++++ L+L L P+L E +L ++ ++ P+I V+S +E Sbjct: 476 LTFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQ 535 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G+ ID LL Q S E+++ + +LEE YD++GEKFNL SPKQL + F KL +P KT Sbjct: 536 GVLIDSMLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTP 595 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 G T + L ++ D P+ K ILE R LSK+KSTY D LP +N +T RVHT Y A Sbjct: 596 KGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQA 654 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 + TGRL+S EPNLQNIPI+T+ G++IR+AFI+P +K+++ADYSQIELRI+AH+++ Sbjct: 655 NAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F DIHR AAE+FG + ++V+ + RR AK +NF +IYG+S F LA QL IPR Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA YI YF R+PG+ Y+E+T+ GYV T+FGRR++ EI + R ERA Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834 Query: 887 AINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAP+QG+AADI ++AMI++ + ++ + + M++Q+HDELVFEV ++ + I Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTIC 894 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M +A +L V L + NNW E Sbjct: 895 TLMAQAA----DLDVELLAEAGIGNNWDE 919 >gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] Length = 928 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 363/986 (36%), Positives = 544/986 (55%), Gaps = 82/986 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A L+ DG P A+ G NML +L R + + + AV+FD Sbjct: 5 LLLVDGSSYLYRAYHAMAQLTAP-DGAPTGALYGVLNMLRRL----RADYVHDYCAVVFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122 FR+E++PDYKA RP +P+ L PQ LP LVRL G P + I EADD+I Sbjct: 60 AKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVEADDVIG 115 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T +A + G+ V + + DKD+ QLV+ L +T+ E +DIE V +K+G+ P+++ Sbjct: 116 TLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDY 175 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD +DN+PG+ G KTA L+ YG+L ++ +A+ IK K EN+ L Sbjct: 176 LALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIK-GKVGENLQAALPQLPL 234 Query: 243 SRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVATTYDCDA 296 S LV ++TDV + H L D P+ A++F + R T+ +A Sbjct: 235 SYDLVTIKTDVDL-----HSELSDGLESLRRTSPKWSQL--AVDFKRWGFR---TWLKEA 284 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL-ERL 355 + D + + I + +D +T+ SE+ P+K E+L Sbjct: 285 ESRIHEAADGDLFGSDTIGEQAALDMETS-----------------SERLPEKAVAPEKL 327 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 Y + + KL G T ++DA ++ + I+I+ Sbjct: 328 -----------DYQAVTTEAQFAALLDKLSQAGKIGIDTETTSLDAMNAALVGISIA--- 373 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK EN KIG N+KYD+ Sbjct: 374 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 425 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 426 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 484 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G+QI Sbjct: 485 ADVAIEQATEYAAQDADFALRLDAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 543 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 544 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 603 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 604 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 662 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 663 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 722 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG+ E VSP+ RR+AKTINF +IYG+ + LA L I A Sbjct: 723 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 782 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +I RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAAI Sbjct: 783 KTFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 842 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI V + L D L +K+++Q+HDELV EVPE E+ + + M Sbjct: 843 NAPMQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPEAELDLVKEKLPQIM 902 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 K +N VPL + V NW+E Sbjct: 903 AKVDEGMLN--VPLVAEVGVGMNWEE 926 >gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1] Length = 959 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 365/989 (36%), Positives = 549/989 (55%), Gaps = 85/989 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGS +++R F+ P LS GLP NAI G N L KL+ K+ +H AV FD Sbjct: 33 VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 87 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ + YKA+RP + E L Q+P + + GI I+I GFEADDII T Y Sbjct: 88 TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 147 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G V I + DKD+ QLV+ L D+ + D VI+K+G+ E++ AL Sbjct: 148 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 207 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I GIP +G KTAA LL EY N++ IL N + IK + +I + ++ L+R L Sbjct: 208 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 266 Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300 + T++ + I + + L+ P L + + LEF K + + A + Sbjct: 267 ATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 321 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + +K ++I+ D T+ S QTP Sbjct: 322 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 344 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418 PI + SY I +D + + KL + F I T+T D H+K + I++ST D Sbjct: 345 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 399 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E +I + D N L +LS K EN + KIG ++KYD + Sbjct: 400 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 454 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533 +YGI++ ++ D ML SYV+++ + H + ++A+ +L + T +++ + DK+ Sbjct: 455 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 514 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + ++A E++++ +L+ + +K + L+ P +++QME GI ID Sbjct: 515 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 574 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L Q+S E K +++L+ ++ E FNL+SPKQLG+ILF KL G KTKTGQ+ T Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L +I ++P+I +LE R LSK+KSTY D+L N +++ RVHT Y A T TGR Sbjct: 635 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 690 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+TD G+ IR AFI+P + +++ADYSQIELR++AH + L + F Sbjct: 691 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 750 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 ++LDIH AAEI G +I +V+P RR AK +NF ++YG+S F LA Q+ + R+ A DYI Sbjct: 751 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 810 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 KRYF R+P I EY+E+TK +Q GYV+TI GR+++ +I S I++ ERAAINAP+ Sbjct: 811 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 870 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAA+I + AMI+V + L K K+LLQ+HDELVFEV ++ +I +M+ A Sbjct: 871 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 928 Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974 ++ VPL V I + NW++ Sbjct: 929 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 957 >gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32] gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32] Length = 922 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 365/993 (36%), Positives = 540/993 (54%), Gaps = 102/993 (10%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRA+YA P L+ G A+ G NML LL SR + SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYQP--SHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRN++Y +YKA RP +P+ L Q+ PL R+ A G+P I I G EADD+I T Sbjct: 62 FDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IHALGLPLISIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +E AV I + DKD+ QLV L +T+ + + + V K+G+ P++++ Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPDEVAAKYGVGPDRIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GD DNIPG+PG+G KTA +L G++ N+L ++ K I+E A Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAAPEKVSDLGFRGAKTMAAKIIENA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK-----LINRVATTY 292 + RLS +L ++TDV + L + + LI +EF + L N+ TT Sbjct: 241 DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYSEMEFKRWLAEVLDNKAPTTV 300 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 DAA ++ +Q SS+ + Sbjct: 301 VADAAKVK----------------------------TQESSMPN---------------- 316 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 P Y I+ + +W+ KL+ + T ++D ++ + + Sbjct: 317 ---------PALETQYDTILTEAQLDEWIAKLKQASLIAVDTETTSLDYMVAELVGM--- 364 Query: 413 TLDQKDDTSFKVET---IFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGH 467 SF VE ++ L+ D G L K+ L L+ E++ K+G Sbjct: 365 --------SFAVEAGKAAYLPLA----HDYVGAPQQLDKQFALEKLRPILEDDKVKKVGQ 412 Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 N+KYD VL GI ++G D ML SYV +S S HD+ +A K+L + ++I Sbjct: 413 NLKYDISVLANAGIKLQGVVFDTMLESYVFNSVASRHDMDGLAIKYLGHKNIGFEDIAGK 472 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQ 582 + ++I +A E++++ L+L L P+L E +L V+ ++ P+I V+S Sbjct: 473 GAKQLTFNQIPLEVAAPYAAEDADITLRLHQHLWPRLEKEPQLASVFTEIELPLIQVLSD 532 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +E G+ ID LL Q S E+++ + +LEE Y+++GEKFNL SPKQL + F KL +P Sbjct: 533 IERQGVLIDSMLLGQQSDELARKIDTLEEKAYEIAGEKFNLGSPKQLQVLFFEKLGYPIT 592 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KT G T + L ++ D P+ K ILE R LSK+KSTY D LP +N +T RVHT Sbjct: 593 KKTPKGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTS 651 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A+ TGRL+S EPNLQNIPI+T+ G++IR+AFI+P +K+++ADYSQIELRI+AH++ Sbjct: 652 YHQANAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLS 711 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L + F DIHR AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL Sbjct: 712 QDAGLLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLD 771 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IPR+EA YI YF R+PG+ Y+E+T+ + GYV T+FGRR++ EI + R Sbjct: 772 IPRNEAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQG 831 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTAS 941 ERAAINAP+QG+AADI ++AMI++ + ++ + + M++Q+HDELVFEV ++ T Sbjct: 832 AERAAINAPMQGTAADIIKKAMINIAQWIKTETQGEIAMIMQVHDELVFEVDADKAETLK 891 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q + M KA + L V L + +NW E Sbjct: 892 QKVCELMAKAAI----LDVALLAEAGIGDNWDE 920 >gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] Length = 948 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 361/1009 (35%), Positives = 551/1009 (54%), Gaps = 103/1009 (10%) Query: 4 ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + L+L+D + I+R ++A P ++ K G+ +AI GF N L +++ + + H Sbjct: 3 QKRLYLLDAYALIFRGYFAFIKNPRINSK--GMDTSAIMGFMNALMDVIKREKPD----H 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV FD T+R E+Y +YKA+R + PE + +P ++ +A IP IE+ GFEADD+ Sbjct: 57 LAVAFDKGGSTYRYEMYQEYKAHRDETPEAIKIAVPYIQDLLKAMHIPIIEVAGFEADDL 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP----- 175 I T AEKE F V +++ DKD QLVS +Y + + + I+ WG+P Sbjct: 117 IGTLAKQAEKEDFKVYMVTPDKDFAQLVSENIFMYKPAR-----MGNDIEIWGVPEVLAK 171 Query: 176 -----PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 PE+++ + GD+ DNIPG+PG+G KTA L+EYG++EN+L N ++K + Sbjct: 172 FEIERPEQVIDFLGMMGDAADNIPGLPGVGEKTAKKFLKEYGSIENLLANTHQLK-GAIK 230 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF----TKLIN 286 + I E LS+KL + D P+T L + + + LEF T+ Sbjct: 231 DKIEANKEKGILSKKLATILLDCPVTFNASTYELSKPDVEKTDELFQELEFRQMKTQFDK 290 Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346 T D D +D N +N I +T + + T SDQ S Sbjct: 291 YFGTGKDYDE-------IDTNENDNSQIQKKT-VAKKTNEDQFDLFGFSDQESG------ 336 Query: 347 PQKLFLERLQKLSQYPINNDS-YTKIVNTKDIQQWVQ----------KLETIGSASFKII 395 I DS Y K+ NT+ Q ++ L S F Sbjct: 337 ---------------EIKTDSHYAKLENTEHFYQSIEGDFAVKLLLQNLLNQTSVCFDTE 381 Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455 T +DA +++ + ++ S F+ F +D+ + + K Sbjct: 382 TTGIDALNAQLVGMSFS---------FEKGKAFYVPFPENQEDA-------QVLADKFKP 425 Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS 514 FFE+E KIG NIKYD +L YG+ ++G D M+ Y+++ H++ +++ +L Sbjct: 426 FFESESIEKIGQNIKYDLKILSHYGVQIKGKLFDTMIAHYLINPDMR-HNMDVLSETYLK 484 Query: 515 YTRKEI----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570 Y+ K I K K+ + +S +++E+A E++++ QL P L + ++E Sbjct: 485 YSPKSIEDLIGKKGKNQKSMRDVSLEEIKEYAAEDADITYQLKQNFSPILDKAETKKLFE 544 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 ++ P+I V++ ME+ GI +D LK +SAE++ +LE+ IY+ +GEKFNL+SPKQLG Sbjct: 545 EIEIPLIPVLAAMELEGINLDVPFLKSMSAEMALESNALEQKIYETAGEKFNLASPKQLG 604 Query: 631 DILFTKLKFPSGAK---TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 D+LF K+K GAK TKTGQ+ T + L + DNPI+K+ILEWRQ+ K++STY D+ Sbjct: 605 DVLFDKMKI-GGAKQKKTKTGQYATGEEILSYL-ANDNPIVKDILEWRQMVKLQSTYIDA 662 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745 LPN ++K+T RVHT Y TGRL+S PNLQNIP++T+ G+ IR+AFI P + L Sbjct: 663 LPNQVDKKTGRVHTDYMQTVAATGRLSSNNPNLQNIPVRTERGRLIRKAFI-PRNENYTL 721 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 ISADYSQIELRI+A ++ + F+N+ DIH+ AA++F V +E V+ + R +AKT+N Sbjct: 722 ISADYSQIELRIIAALSGEENMIAAFQNNQDIHKSTAAKVFNVALEDVTKEQRSNAKTVN 781 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F IIYG+S F L+ Q + R E+A+ I Y+ +P + Y+ +F R+NGYV+T+ GR Sbjct: 782 FGIIYGVSAFGLSNQTSLSRKESAELIDAYYATYPKLKSYMSNQVDFARENGYVQTVLGR 841 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +INS +++ ER A+NAPIQGSAADI + AMI++HK L +KMLLQ+H Sbjct: 842 RRYLKDINSANMMVKSGAERNAVNAPIQGSAADIIKIAMINIHKKLTQENWQSKMLLQVH 901 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DELVF+V E+ +I + ME A + VPL V I + NW E Sbjct: 902 DELVFDVHNSELEKIQPMIKYEMENA----FKIDVPLDVEIGIGKNWLE 946 >gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169] Length = 956 Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust. Identities = 365/989 (36%), Positives = 550/989 (55%), Gaps = 85/989 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGS +++R F+ P LS GLP NAI G N L KL+ K+ +H AV FD Sbjct: 30 VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 84 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ + YKA+RP + E L Q+P + + GI I+I GFEADDII T Y Sbjct: 85 TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 144 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G V I + DKD+ QLV+ L D+ + D VI+K+G+ E++ AL Sbjct: 145 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 204 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I GIP +G KTAA LL EY N++ IL N + IK + +I + ++ L+R L Sbjct: 205 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 263 Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300 + T++ + I + + L+ P L + + LEF K + + A + Sbjct: 264 ATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 318 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + +K ++I+ D T+ S QTP Sbjct: 319 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 341 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418 PI + SY I +D + + KL + F I T+T D H+K + I++ST D Sbjct: 342 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 396 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E +I + D N L + +LS K EN + KIG ++KYD + Sbjct: 397 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 451 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533 +YGI++ ++ D ML SYV+++ + H + ++A+ +L + T +++ + DK+ Sbjct: 452 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 511 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + ++A E++++ +L+ + +K + L+ P +++QME GI ID Sbjct: 512 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 571 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L Q+S E K +++L+ ++ E FNL+SPKQLG+ILF KL G KTKTGQ+ T Sbjct: 572 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 631 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L +I ++P+I +LE R LSK+KSTY D+L N +++ RVHT Y A T TGR Sbjct: 632 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 687 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+TD G+ IR AFI+P + +++ADYSQIELR++AH + L + F Sbjct: 688 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 747 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 ++LDIH AAEI G +I +V+P RR AK +NF ++YG+S F LA Q+ + R+ A DYI Sbjct: 748 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 807 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 KRYF R+P I EY+E+TK +Q GYV+TI GR+++ +I S I++ ERAAINAP+ Sbjct: 808 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 867 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAA+I + AMI+V + L K K+LLQ+HDELVFEV ++ +I +M+ A Sbjct: 868 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 925 Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974 ++ VPL V I + NW++ Sbjct: 926 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 954 >gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] Length = 928 Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust. Identities = 351/991 (35%), Positives = 546/991 (55%), Gaps = 100/991 (10%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N LVDGSS+++RAF+ P L+ G AI G NML L+ K+ +H AV+ Sbjct: 15 NPFILVDGSSYLFRAFHGMPPLTNSK-GQDTGAIYGVINMLRSLI----KQFSPTHMAVV 69 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR++IY +YKANRP +PE L Q+ + +A G+P I G EADD+I T Sbjct: 70 FDAKGKTFRDDIYKEYKANRPSMPEELRSQIEPLHKIIRAMGLPIIVESGVEADDVIGTL 129 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A K G I + DKD+ QLV+ L +T+ +D + V++K+GIPPE ++ A Sbjct: 130 ADQASKLGIPTLISTGDKDMAQLVNEHVTLINTMNNHVMDPQGVVEKFGIPPELVIDFLA 189 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GD +DNIPG+PG+G K+A LLQ G++ +I N +I KK + + EY E Sbjct: 190 LKGDKVDNIPGVPGVGDKSALGLLQGIGSINDIYENLDKIASLDFRGAKKMADKMREYEE 249 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 ARLS L ++ DV + DC+ + Sbjct: 250 QARLSYTLATIKLDVEM-------------------------------------DCNPTS 272 Query: 299 IEPVVLDINTTENKGIAIETEIDR---DTT------IKTSQFSSLSDQTSKINSEQTPQK 349 + PV D + K + E E R D T +T Q S SD+ S + Q Sbjct: 273 LSPVAADYSVL--KELFAELEFKRWLKDATDALNNGAETEQAMSASDEPSPKSGVQV--- 327 Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409 +Y I+ +++W KL+ +F T +++ ++ + + Sbjct: 328 -----------------TYQTILTQDALEKWFAKLQQADLFAFDTETTSLNYMQAELVGM 370 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 + S +++ D + ++D + + +L+ K E+++ K+G ++ Sbjct: 371 SFS-IEEGDAAYLPLAHDYVDAPQQLDRSA---------VLALFKPLLEDKNKAKVGQHL 420 Query: 470 KYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525 KYDK VL Y I+++G D ML SYVL+S + HD+ S+AQ +L + ++I Sbjct: 421 KYDKNVLANYDINLQGIAYDTMLESYVLNSVATRHDMDSLAQYYLGLSTVHFEDIAGKGA 480 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQME 584 + ++I Q ++A E++++ L+L + KL +L V ++ P+ V+++ME Sbjct: 481 KQLTFNQIPLDQAAQYAAEDADITLRLHNHIWQKLHQTPELASVLTEIEVPLATVLAKME 540 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 G+ ID L Q S +++ ++ LE +++L+GE+FNL S KQL +ILF KL P K Sbjct: 541 QFGVLIDSQKLSQQSQDLATRIMQLEREVHELAGEEFNLGSTKQLQEILFNKLSLPVLKK 600 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 T G T+ + L+++ P+ K ++E+R LSK+K+TY D LP IN R+ RVHT Y Sbjct: 601 TPKGAPSTSEEVLQELAL-TYPLPKLLMEFRVLSKLKNTYTDKLPKMINPRSGRVHTSYH 659 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 A T TGRL+S EPNLQNIPI+T+ G+++R+AFI+ P K+++ADYSQIELRI+AH+++ Sbjct: 660 QAITATGRLSSTEPNLQNIPIRTEQGRRVRQAFIARPGYKIVAADYSQIELRIMAHLSQD 719 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + F DIH AAE+F V++ +V+ + RR+AK INF +IYG+S F L+ QL + Sbjct: 720 EGLLKAFSQGKDIHTATAAEVFNVSLTEVTTEQRRNAKAINFGLIYGMSAFGLSKQLNVS 779 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R +A Y+ YF R+PG+ +Y+E ++ ++NGYV T+FGRR++ +IN+ R E Sbjct: 780 RHDAQHYMDLYFERYPGVLKYMEDSRIVAKENGYVSTVFGRRLYLPDINASNGLRRKGAE 839 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLED-HKLATKMLLQIHDELVFEVPEEEITTASQI 943 RAAINAP+QG+AADI ++AM+ V ++ T+M++Q+HDEL+FE+ E+ + Sbjct: 840 RAAINAPMQGTAADIIKKAMLKVDAWIDTLPSDQTRMIMQVHDELIFEIKEQNVENDKNT 899 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 IV MEKA ++L VPL V V NW + Sbjct: 900 IVDLMEKA----VSLDVPLIVEAGVGENWDQ 926 >gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E] Length = 959 Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust. Identities = 366/989 (37%), Positives = 550/989 (55%), Gaps = 85/989 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGS +++R F+ P LS GLP NAI G N L KL+ K+ +H AV FD Sbjct: 33 VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 87 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ + YKA+RP + E L Q+P + + GI I+I GFEADDII T Y Sbjct: 88 TKAPTFRHNLSETYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 147 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G V I + DKD+ QLV+ L D+ + D VI+K+G+ E++ AL Sbjct: 148 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 207 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I GIP +G KTAA LL EY N++ IL N + IK + +I + ++ L+R L Sbjct: 208 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 266 Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300 + T++ + I + + L+ P L + + LEF K + + A + Sbjct: 267 ATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAQLLNLP----- 321 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + +K ++I+T D T S QTP Sbjct: 322 ------HQPTDKALSIDTH----------------DNTP---SSQTPIP----------- 345 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418 PI + SY I +D + + KL + F I T+T D H+K + I++ST D Sbjct: 346 -PIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 399 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E +I + D N L + +LS K EN + KIG ++KYD + Sbjct: 400 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 454 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533 +YGI++ ++ D ML SYV+++ + H + ++A+ +L + T +++ + DK+ Sbjct: 455 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 514 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + ++A E++++ +L+ + +K + L+ P +++QME GI ID Sbjct: 515 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDT 574 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L Q+S E K +++L+ ++ E FNL+SPKQLG+ILF KL G KTKTGQ+ T Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L +I ++P+I +LE R LSK+KSTY D+L N +++ RVHT Y A T TGR Sbjct: 635 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 690 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+TD G+ IR AFI+P + +++ADYSQIELR++AH + L + F Sbjct: 691 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 750 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 ++LDIH AAEI G +I +V+P RR AK +NF ++YG+S F LA Q+ + R+ A DYI Sbjct: 751 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 810 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 KRYF R+P I EY+E+TK +Q GYV+TI GR+++ +I S I++ ERAAINAP+ Sbjct: 811 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 870 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAA+I + AMI+V + L K K+LLQ+HDELVFEV ++ +I +M+ A Sbjct: 871 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 928 Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974 ++ VPL V I + NW++ Sbjct: 929 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 957 >gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 923 Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust. Identities = 360/988 (36%), Positives = 540/988 (54%), Gaps = 91/988 (9%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRA+YA P L+ G A+ G NML LL R + AV+ Sbjct: 7 NPLILVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLSRYRP----TQMAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRNE+Y +YKA+RP +P+ L Q+ PL R+ +A GIP I I G EADD+I T Sbjct: 62 FDAKGPTFRNEMYQEYKAHRPPMPDDLRSQIAPLHRI-IKALGIPLISIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A EG +V I + DKD+ QLV+ L +T+ + + E V K+G+ PE ++ L Sbjct: 121 IAIQAGNEGRSVLISTGDKDMAQLVNEHITLINTMTDTILGPEEVATKFGVGPELIIDLL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237 A+ GD DNIPG+PG+G KTA +L G + +L + K I + A Sbjct: 181 AMMGDKADNIPGLPGVGEKTALAMLTGAGGVAKLLAEPDCVTDLGFRGAKTMAAKIRDNA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E LS KL ++TDV + L L + N LI+ +EF + + V Sbjct: 241 EMLELSYKLATIKTDVTLEQDWHQLSLSEPNRDELIACYGEMEFKRWLAEV--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +D + + T + ++Q + ++P +E Sbjct: 292 ----------------------LDNKSPLGTKAAAPQANQ----ETTESPAAAVIET--- 322 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y ++ ++ W+ KL + T ++D ++ + + Sbjct: 323 ---------QYHTLLTESELDAWLDKLSKAELIAVDTETTSLDYMQAELVGL-------- 365 Query: 418 DDTSFKVET---IFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYD 472 SF +E ++ L D G + L +E L+ LK EN K+G N+KYD Sbjct: 366 ---SFAIEAGKAAYLPLG----HDYPGAPSQLPREATLAKLKPLLENPDIKKVGQNLKYD 418 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528 VL GI ++G D ML SYV +S S HD+ +A K+L + + +EI + Sbjct: 419 MSVLANAGIQLKGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQL 478 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITG 587 ++I+ Q +A E++++ L+L L P+L E+ L V+ L+ P+I+V+S +E G Sbjct: 479 TFNQIALEQAAPYAAEDADITLRLHQHLWPRLSKEEGLESVFTELELPLIEVLSDIERRG 538 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + ID LL Q S E+++ + LE++ ++++GE FNLSS KQL ++ FTKL +P KT Sbjct: 539 VLIDSMLLGQQSEELARKIDELEQHAHEIAGEPFNLSSTKQLQELFFTKLGYPVIKKTPK 598 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + L ++ D P+ K ILE R L+K+KSTY D LP IN RT RVHT Y A+ Sbjct: 599 GAPSTAEEVLVELAL-DYPLPKIILEHRSLTKLKSTYTDKLPLMINGRTGRVHTSYHQAN 657 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 TGRL+S +PNLQNIPI+T+ G++IR+AF++P K++++ADYSQIELRI+AH+++ L Sbjct: 658 AATGRLSSSDPNLQNIPIRTEEGRRIRQAFVAPEGKRILAADYSQIELRIMAHLSQDEGL 717 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F DIHR AAE+F V E V+ + RR AK +NF +IYG+S F LA QL IPR+E Sbjct: 718 LRAFAEGKDIHRATAAEVFDVAFETVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNE 777 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A YI YF R+PG+ +Y+E+T+ + GYV T+FGRR++ EI + R ERAA Sbjct: 778 AQSYIDTYFKRYPGVLKYMEETRAMASEQGYVSTLFGRRLYLPEIRDRNAMRRQAAERAA 837 Query: 888 INAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 INAP+QG+AADI ++AMI++ ++ + + +M++Q+HDELVFEV ++ + + Sbjct: 838 INAPMQGTAADIIKKAMIAIQHWIKTETQGEIQMIMQVHDELVFEVDADKADALKEKVCE 897 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A +L VPL + +NW + Sbjct: 898 LMAAAA----SLDVPLLAEAGLGDNWDQ 921 >gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183] gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175] gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183] gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175] Length = 921 Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust. Identities = 363/989 (36%), Positives = 540/989 (54%), Gaps = 93/989 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA+YA P L+ G A+ G NML LL + SH AV Sbjct: 6 KNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLLTRYQP----SHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFRN++Y +YKA RP +P+ L Q+ PL R+ +A G+P I I G EADD+I Sbjct: 61 VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIEPLHRI-IRALGLPLISISGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A E AV I + DKD+ QLV L +T+ + + E V K+G+ P++++ L Sbjct: 120 TIARQASLENRAVLISTGDKDMAQLVDENVTLINTMTDTIMGPEEVAIKFGVGPDRIIDL 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GD DNIPG+PG+G KTA +L G++ N+L ++ + K I+E Sbjct: 180 LALMGDKADNIPGLPGVGEKTALAMLTGAGSVSNLLAEPEKVAELGFRGSKTMAAKIIEN 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A+ +LS +L ++TDV + L ++ + LI +EF + + V Sbjct: 240 ADMLKLSYELATIKTDVELEQDWHELTIKPADKDELIKCYGEMEFKRWLAEV-------- 291 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 LD T N I +E D+T +++ Q Sbjct: 292 -------LDNKITANTSIDAASETQEDST----PVEAIATQ------------------- 321 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 Y I+ ++ W+ KL+ + T ++D ++ + I Sbjct: 322 -----------YDCILTEAELDAWIAKLKQADLMAVDTETTSLDYMVAELVGI------- 363 Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNT-LTKEI-LSYLKKFFENEHFLKIGHNIKY 471 SF VE ++ L+ D G T + K + L L+ E+ K+G N+KY Sbjct: 364 ----SFAVEAGKAAYLPLT----HDYVGAPTQIDKTVALEKLRPLLEDPKLKKVGQNLKY 415 Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527 D +L GI ++G D ML SYV +S S HD+ +A K+L + + +EI Sbjct: 416 DISILANAGIKLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEEIAGKGAKQ 475 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEIT 586 + ++I +A E++++ L+L L P+L E +L ++ ++ P+I V+S +E Sbjct: 476 LTFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKEAELAAMFIEVELPLIQVLSDIERQ 535 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G+ ID LL Q S E+++ + +LEE YD++GEKFNL SPKQL + F KL +P KT Sbjct: 536 GVLIDSMLLGQQSDELARKIDTLEEKAYDIAGEKFNLGSPKQLQVLFFEKLGYPITKKTP 595 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 G T + L ++ D P+ K ILE R LSK+KSTY D LP +N +T RVHT Y A Sbjct: 596 KGAPSTAEEVLVELAL-DFPLPKVILEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQA 654 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 + TGRL+S EPNLQNIPI+T+ G++IR+AFI+P +K+++ADYSQIELRI+AH+++ Sbjct: 655 NAATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F DIHR AAE+FG + ++V+ + RR AK +NF +IYG+S F LA QL IPR Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA YI YF R+PG+ Y+E+T+ GYV T+FGRR++ EI + R ERA Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834 Query: 887 AINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAP+QG+AADI ++AMI++ + ++ + + M++Q+HDELVFEV ++ + I Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTIC 894 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M +A +L V L + NNW E Sbjct: 895 TLMAQAA----DLDVELLAEAGIGNNWDE 919 >gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8] Length = 956 Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust. Identities = 365/989 (36%), Positives = 550/989 (55%), Gaps = 85/989 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGS +++R F+ P LS GLP NAI G N L KL+ K+ +H AV FD Sbjct: 30 VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 84 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ + YKA+RP + E L Q+P + + GI I+I GFEADDII T Y Sbjct: 85 TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 144 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G V I + DKD+ QLV+ L D+ + D VI+K+G+ E++ AL Sbjct: 145 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 204 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I GIP +G KTAA LL EY N++ IL N + IK + +I + ++ L+R L Sbjct: 205 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 263 Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300 + T++ + I + + L+ P L + + LEF K + + A + Sbjct: 264 ATIVTNLKLAISFDDITLDHSQETTIERAPALYALFEELEFKKEMAQTAELLNLP----- 318 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + +K ++I+ D T+ S QTP Sbjct: 319 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 341 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418 PI + SY I +D + + KL + F I T+T D H+K + I++ST D Sbjct: 342 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 396 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E +I + D N L + +LS K EN + KIG ++KYD + Sbjct: 397 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 451 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533 +YGI++ ++ D ML SYV+++ + H + ++A+ +L + T +++ + DK+ Sbjct: 452 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 511 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + ++A E++++ +L+ + +K + L+ P +++QME GI ID Sbjct: 512 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 571 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L Q+S E K +++L+ ++ E FNL+SPKQLG+ILF KL G KTKTGQ+ T Sbjct: 572 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 631 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L +I ++P+I +LE R LSK+KSTY D+L N +++ RVHT Y A T TGR Sbjct: 632 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 687 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+TD G+ IR AFI+P + +++ADYSQIELR++AH + L + F Sbjct: 688 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 747 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 ++LDIH AAEI G +I +V+P RR AK +NF ++YG+S F LA Q+ + R+ A DYI Sbjct: 748 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 807 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 KRYF R+P I EY+E+TK +Q GYV+TI GR+++ +I S I++ ERAAINAP+ Sbjct: 808 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 867 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAA+I + AMI+V + L K K+LLQ+HDELVFEV ++ +I +M+ A Sbjct: 868 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 925 Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974 ++ VPL V I + NW++ Sbjct: 926 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 954 >gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] Length = 923 Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust. Identities = 356/974 (36%), Positives = 550/974 (56%), Gaps = 62/974 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS F++RA++A P L+ GL NAI G + + KL++ + +H AVIFD Sbjct: 4 FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQP----THMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T Sbjct: 59 TPEPTFRHKLSPIYKGDRPSMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A EG V I + DKD+ QLV+ L D+ K+ +D + V +K+G+ P +++ L Sbjct: 119 RAVLEGHHVLISTGDKDMAQLVNDHVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G KTAA LL EYG L+NI+ NA ++K K +NI + + +L +L Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANADQLK-GKISQNIKDNLDNIKLDHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + D+P+ + L L D N L + LEF + + + ++++ + V Sbjct: 238 ASIVCDLPLELDWHELKLIDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSSYKQQV--- 294 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 ++ E+ +I+T +SL+ Q ++ + L E +L Q N D Sbjct: 295 -----SQAVVQNEVKPADSIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 + ++T+ + E +G F I D DA++ P+A Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAQDAYYV-PLA------------------ 385 Query: 427 IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 HT +++ + L +E IL+ +K ENE KIGH++KYD + +GI ++G Sbjct: 386 -------HTYENAPQQ--LNREQILAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKG 436 Query: 486 -FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541 + D ML SYVL++ + H + +A+ +LS+ T ++I ++I + Sbjct: 437 WYFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVATHY 496 Query: 542 AIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 A E+++V +L+ +L KL +L ++ ++ P+ ++S ME GI++D L +S Sbjct: 497 AAEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSV 556 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 E +K + LE +++ E FN++SPKQ+G+ILF KL G KT TGQ+ T+ LE+I Sbjct: 557 EFAKTMEGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI 616 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 ++P+ + ILE R L+K+KSTY D L + T RVHT Y A T TGRL+S +PNL Sbjct: 617 ---EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNL 673 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIPI+ +G++IR+AFI+P + L++ADYSQIELR++AH ++ L F++ D+HR Sbjct: 674 QNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRR 733 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 AAE+ G+ IE V+ RR AK +NF ++YG+S F L QL R E+ +YIK+YF R+P Sbjct: 734 TAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRYP 793 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 GI+EY+++T+ + G+VETI GRR++ +I++ +R ERAAINAP+QGSAADI Sbjct: 794 GIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADII 853 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 + AMI V K L K K+LLQ+HDELVFEV + S+ I + ME + + V Sbjct: 854 KLAMIEVDKILP--KDQAKLLLQVHDELVFEVDQNIADELSKQIANVMESV----LEISV 907 Query: 961 PLKVNIKVSNNWQE 974 PL V + NW + Sbjct: 908 PLVVEVGQGLNWDD 921 >gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N] gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N] Length = 904 Score = 582 bits (1499), Expect = e-163, Method: Compositional matrix adjust. Identities = 342/975 (35%), Positives = 537/975 (55%), Gaps = 84/975 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R G P A+ G NML KL+ + + E + A +FD Sbjct: 5 LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVINMLRKLVLDHKAE----YAACVFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++IYP+YKA+RP +PE L Q+ + A +A G P + ++G EADD+IAT Sbjct: 60 ARGGTFRDDIYPEYKAHRPSMPEDLAAQVEPIHAAIRALGWPVLAVEGVEADDVIATLAR 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + G + + DKDL QLV+P L +T+ E +D V+ K+G+P +++V L Sbjct: 120 RATEAGLHTIVSTGDKDLAQLVNPQVTLVNTMTGEVLDETGVVNKFGVPADRIVDYLMLV 179 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ +G KTA L E+G++E+++ NA IK N+ E ++R+L Sbjct: 180 GDTVDNVPGVTKVGPKTAVKWLSEFGSIEHLIQNADGIKGVAG-NNLREAIPNFPMTRQL 238 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + ++ +DC+ L +FL +LE +++P Sbjct: 239 LTVK--------------DDCD---LSAFLTSLE-----------------DLKP----- 259 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 TE+DRDT + +++ + R+ +++ Sbjct: 260 -----------TELDRDTLNRLYDRYGFRTWLRELSGDAERVPAGDARVAEVAHAAPVEQ 308 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425 Y I W+ + E + T ++D ++ + + S VE Sbjct: 309 QYQIITEWPAFDAWMARAEATPLVALDTETTSLDEMQARLVGL-----------SMAVEP 357 Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 +I L+ H ++ G +E+L L+ + E+ K+ H+ KYD V GI++ Sbjct: 358 GVACYIPLA-HRGPEA-GTQLPKQEVLERLRGWLEDATRSKLLHHAKYDTHVFANEGIAL 415 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 RG ED ML +YVL+S R + +AQ++L + +++ I D+++ + Sbjct: 416 RGVTEDTMLQAYVLESHRGV-GLNDLAQRYLGRSGVNYEDLCGKGAKQIGFDEVAVDRAG 474 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E+++ LQL LRP + E L +Y +L+ + V+ +E G+++D + L + S Sbjct: 475 FYAAEDADFTLQLHQALRPGVTGE-LERIY-KLELEVSRVLVAIERNGVKVDAEELGRQS 532 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 E+ + +L+LE+ Y+L+G+ FNL+SPKQLG+ILF ++ P KT G T + L + Sbjct: 533 HELGREMLALEQRAYELAGQPFNLNSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSK 592 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + D P+ + +LE+R LSK+KSTY D LP IN T RVHT YS A+ +TGRLAS +PN Sbjct: 593 L-AQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPATGRVHTHYSQAAVITGRLASSDPN 651 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIP++T G+++R AF++ L+SADYSQIELRI+AH++ L + F DIHR Sbjct: 652 LQNIPVRTLAGRRVREAFVADGDGLLVSADYSQIELRIMAHVSDDANLQRAFAAGEDIHR 711 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAE+FGV + +V+ + RR AK INF +IYG+ F LA+ L I R A YI RYF R+ Sbjct: 712 ATAAEVFGVPLPEVTSEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFARY 771 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 PG+ Y++ T+ R+ GYVET+FGRR+ +I + R ERAAINAP+QG+AAD+ Sbjct: 772 PGVARYMDDTRRLAREQGYVETVFGRRLQLPDIRAASGPRRQGAERAAINAPMQGTAADL 831 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + AM++V L +L+ ++++Q+HDELV EVP E+ + + M + LR Sbjct: 832 IKMAMVAVQDWLVSQRLSARLIMQVHDELVLEVPAVELDLVRETVPRLMSEVA----ALR 887 Query: 960 VPLKVNIKVSNNWQE 974 VPL + V +NW++ Sbjct: 888 VPLIAEVGVGHNWEQ 902 >gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1] Length = 959 Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust. Identities = 365/989 (36%), Positives = 550/989 (55%), Gaps = 85/989 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGS +++R F+ P LS GLP NAI G N L KL+ K+ +H AV FD Sbjct: 33 VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 87 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ + YKA+RP + E L Q+P + + GI I+I GFEADDII T Y Sbjct: 88 TKAPTFRHNLSETYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 147 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G V I + DKD+ QLV+ L D+ + D VI+K+G+ E++ AL Sbjct: 148 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 207 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I GIP +G KTAA LL EY N++ IL N + IK + +I + ++ L+R L Sbjct: 208 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 266 Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300 + T++ + I + + L+ P L + + LEF K + + A + Sbjct: 267 ATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 321 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + +K ++I+ D T+ S QTP Sbjct: 322 ------HQPTDKAVSIDI---HDNTL----------------SSQTPIP----------- 345 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418 PI + SY I +D + + KL + F I T+T D H+K + I++ST D Sbjct: 346 -PIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 399 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E +I + D N L + +LS K EN + KIG ++KYD + Sbjct: 400 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 454 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533 +YGI++ ++ D ML SYV+++ + H + ++A+ +L + T +++ + DK+ Sbjct: 455 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 514 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + ++A E++++ +L+ + +K + L+ P +++QME GI ID Sbjct: 515 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEIPTAQILTQMEHDGILIDT 574 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L Q+S E K +++L+ ++ E FNL+SPKQLG+ILF KL G KTKTGQ+ T Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L +I ++P+I +LE R LSK+KSTY D+L N +++ RVHT Y A T TGR Sbjct: 635 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 690 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+TD G+ IR AFI+P + +++ADYSQIELR++AH + L + F Sbjct: 691 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 750 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 ++LDIH AAEI G +I +V+P RR AK +NF ++YG+S F LA Q+ + R+ A DYI Sbjct: 751 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 810 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 KRYF R+P I EY+E+TK +Q GYV+TI GR+++ +I S I++ ERAAINAP+ Sbjct: 811 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 870 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAA+I + AMI+V + L K K+LLQ+HDELVFEV ++ +I +M+ A Sbjct: 871 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHNIGNLIKTAMQNAL 928 Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974 ++ VPL V I + NW++ Sbjct: 929 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 957 >gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby] gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby] Length = 896 Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust. Identities = 371/977 (37%), Positives = 557/977 (57%), Gaps = 96/977 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS+ +RAF+A P L+ G P AI G NM+ K++++ + E IA V+FD Sbjct: 5 LILIDGSSYFFRAFHALPPLTNS-KGQPTGAIYGVANMVKKIIKDYQPEEIA----VVFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 TFR+E YP+YKA+RP +P+ L Q PL++L QA G+P + I G EADD+I T Sbjct: 60 AKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQL-LQAMGLPLLIIDGVEADDVIGTLA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A ++G V I + DKD+ QLV+ L +T+ +DI+ V K+G+ PE+++ L Sbjct: 119 KQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS+DNIPG+ G KTA L EY L+N+L +A+ I K I EY Sbjct: 179 IGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEIGGK-----IGEY--------- 224 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LR +P HL L +L++ LE +N++ A+ E ++ Sbjct: 225 ---LRASIP------HLPLSK----KLVTIKTDLELPLNLNQLMPK----PADNEQLI-- 265 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 ++ R+ K S L + + ++++P+++ NN Sbjct: 266 -------------KLTRELEFK----SWLKELLQEEENQKSPKEMDAS----------NN 298 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLDQKDDTSFK 423 SY I + + W+ KLE S F I T+T +D ++ + I+++ ++++ S+ Sbjct: 299 KSYEIITTHQQLNHWLNKLEQ--SQQFCIDTETTNLDVMQAELVGISLAV--EEENASY- 353 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 I L+ HT G L KE +L+ LK EN KIG NIKYD VL YGI+ Sbjct: 354 -----IPLA-HTD----GSTQLVKEEVLTALKPILENPAIGKIGQNIKYDYSVLKNYGIT 403 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 ++G D ML SYVL+SG HD+ S+A K+L Y + +++ + D+I + Sbjct: 404 LKGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGAKQLRFDQIPVEKA 463 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +A E++++ L+L L P ++ E L +V ++ P++ V++ MEI G+ ID +L++ Sbjct: 464 GIYAAEDADITLRLHHKLYP-MLDEPLRNVLHDIEMPLLTVLADMEIHGVLIDPVILEKH 522 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 + + + + SLE+ L+G+ FNL+SPKQL +ILF + K P AKT TGQ +TA+ + Sbjct: 523 GSRLKEQMKSLEQEAVQLAGKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQ-PSTAESVL 581 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 Q D + ILE+R LSK+ STY D+LP IN +T RVHT Y+ A TGRL+S +P Sbjct: 582 QELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDP 641 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+++ G+ IR AFI+P +++ADYSQIELRI+AH+++ L + F N DIH Sbjct: 642 NLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIH 701 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 A+EIF N+E VS + RR AK +NF +IYG+S F LA Q+ + R +A YI YF R Sbjct: 702 AATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHYIDTYFRR 761 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +P + EY+E+T+ Q GYVET+FGRR++ EINS + ER AIN P+QG+AAD Sbjct: 762 YPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGPMQGTAAD 821 Query: 899 ITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 I ++ M++V K + KM++Q+HDELVFEV +E + II ME+ + Sbjct: 822 IIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECHAIIHKLMEQT----VK 877 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPL V+I + +NW + Sbjct: 878 LSVPLVVSIGIGSNWDD 894 >gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7] Length = 956 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 365/989 (36%), Positives = 550/989 (55%), Gaps = 85/989 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGS +++R F+ P LS GLP NAI G N L KL+ K+ +H AV FD Sbjct: 30 VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 84 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ + YKA+RP + E L Q+P + + GI I+I GFEADDII T Y Sbjct: 85 TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 144 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G V I + DKD+ QLV+ L D+ + D VI+K+G+ E++ AL Sbjct: 145 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 204 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I GIP +G KTAA LL EY N++ IL N + IK + +I + ++ L+R L Sbjct: 205 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 263 Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300 + T++ + I + + L+ P L + + LEF K + + A + Sbjct: 264 ATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 318 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + +K ++I+ D T+ S QTP Sbjct: 319 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 341 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418 PI + SY I +D + + KL + F I T+T D H+K + I++ST D Sbjct: 342 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 396 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E +I + D N L + +LS K EN + KIG ++KYD + Sbjct: 397 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 451 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533 +YGI++ ++ D ML SYV+++ + H + ++A+ +L + T +++ + DK+ Sbjct: 452 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 511 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + ++A E++++ +L+ + +K + L+ P +++QME GI ID Sbjct: 512 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 571 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L Q+S E K +++L+ ++ E FNL+SPKQLG+ILF KL G KTKTGQ+ T Sbjct: 572 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 631 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L +I ++P+I +LE R LSK+KSTY D+L N +++ RVHT Y A T TGR Sbjct: 632 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 687 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+TD G+ IR AFI+P + +++ADYSQIELR++AH + L + F Sbjct: 688 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 747 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 ++LDIH AAEI G +I +V+P RR AK +NF ++YG+S F LA Q+ + R+ A DYI Sbjct: 748 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIGVDRAVAQDYI 807 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 KRYF R+P I EY+E+TK +Q GYV+TI GR+++ +I S I++ ERAAINAP+ Sbjct: 808 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 867 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAA+I + AMI+V + L K K+LLQ+HDELVFEV ++ +I +M+ A Sbjct: 868 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKIAMQNAL 925 Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974 ++ VPL V I + NW++ Sbjct: 926 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 954 >gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter calcoaceticus PHEA-2] Length = 923 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 352/973 (36%), Positives = 544/973 (55%), Gaps = 60/973 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS F++RA++A P L+ GL NAI G + + KL++ + +H AVIFD Sbjct: 4 FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQP----THMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T Sbjct: 59 TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A EG V I + DKD+ QLV+ L D+ K+ +D + V +K+G+ P +++ L Sbjct: 119 RAVLEGHHVLISTGDKDMAQLVNDHVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G KTAA LL EYG L+NI+ NA ++K K +NI + + +L +L Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANADQLK-GKLSQNIKDNLDNIKLDHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + D+P+ + L L D N L + LEF + + + ++++ + Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVEALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + ++ E+ +I+T +SL+ Q ++ + L E +L Q N D Sbjct: 292 --QQASQTIVQNEVKPAESIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 + ++T+ + E +G F I D DA++ P+A Q+ D Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDRD----- 398 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 +IL+ +K ENE KIGH++KYD + +GI ++G Sbjct: 399 ---------------------QILAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKGW 437 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 + D ML SYVL++ + H + +A+ +LS+ T ++I ++I +A Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497 Query: 543 IENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V +L+ +L KL +L ++ ++ P+ ++S ME GI++D L ++S E Sbjct: 498 AEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 +K + LE +++ E FN++SPKQ+G+ILF KL G KT TGQ+ T+ LE+I Sbjct: 558 FAKTMEGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 ++P+ + ILE R L+K+KSTY D L + T RVHT Y A T TGRL+S +PNLQ Sbjct: 617 --EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+ +G++IR+AFI+P + L++ADYSQIELR++AH ++ L F++ D+HR Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDEALVHAFQHGQDVHRRT 734 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G+ IE V+ RR AK +NF ++YG+S F L QL R E+ +YIK+YF R+PG Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRYPG 794 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I+EY+++T+ + G+VETI GRR++ +I++ +R ERAAINAP+QGSAADI + Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI V K L K K+LLQ+HDELVFE + S+ I ME + + VP Sbjct: 855 LAMIEVDKILP--KDQAKLLLQVHDELVFEADQNIADELSKQIATVMESV----VKISVP 908 Query: 962 LKVNIKVSNNWQE 974 L V + NW + Sbjct: 909 LVVEVGQGQNWDD 921 >gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91] gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91] Length = 906 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 352/977 (36%), Positives = 547/977 (55%), Gaps = 85/977 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R P AI G NML +L KE + A +FD Sbjct: 4 LVLVDGSSYLYRAFHALPDL-RNRLNEPTGAIYGVLNMLRRLY----KEYQPDYSACVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR EIYP YKANRP +P L Q+ + +A G P + + EADD+I T Sbjct: 59 AKGKTFREEIYPQYKANRPPMPADLAGQINPLYACIRAMGWPLLVEEQVEADDVIGTLAR 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A E I + DKD+ QLV+P L +T+ E +D V++K+G+ P +++ AL Sbjct: 119 RAAGERIQCVISTGDKDIAQLVAPGIRLVNTMNSESLDEAGVLQKFGVMPAQIIDFLALV 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DNIPG+ +G KTA L +YG+L N++ +A IK EN+ + + ++SR+L Sbjct: 179 GDSVDNIPGVEKVGPKTAVKWLNQYGSLNNLIAHAHEIK-GVVGENLRKALDWLQVSREL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + ++ C+ P + + + + R+ Y+ Sbjct: 238 LTIK----------------CDVPLAMGWQDLVAAPLDVARLMALYE------------- 268 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 +F S + + +SE P + + L N+D Sbjct: 269 ---------------------HLEFRSWLRELRQSDSETGPATIPM--YDPLVPGERNSD 305 Query: 367 S--YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 S Y I+ ++WVQ+ E+ S T +++ ++ + +++ T Sbjct: 306 SRDYQIILTDSQFEEWVQQCESAELVSIDTETTSLNPMEAELVGLSLCTEPG-------- 357 Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 +I L+ H + N +++L LK + EN K+G N+KYD+ V +G+ + Sbjct: 358 HAAYIPLAHHYQGVPSQLNR--EQVLQRLKPWLENSDIPKVGQNLKYDRHVFANHGVMLN 415 Query: 485 GF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQE 540 G D +L SYVL+S SHD+ S+A++ L + + ++ I +++ Q Sbjct: 416 GIAHDTLLQSYVLES-HLSHDLDSLARRHLDIQTISYDDVTGKGAKRIGFEQVEIQQAGI 474 Query: 541 HAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ L+L L P I+ K L H+Y++++ P+++V+ ++E G+ +D DLL++ Sbjct: 475 YAAEDADIPLRLHHFLYP--IISKDAHLGHIYQQIEMPLLEVLFRIERNGVLLDTDLLRE 532 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E+++ L+ LE+ + L+G FNL+S KQ+ +ILF + K P KT G T + L Sbjct: 533 QSGELARQLVILEQQAHSLAGRAFNLNSTKQIQEILFGQHKLPVIKKTPKGAPSTDEEVL 592 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 +Q+ D P+ K +L++R L+K++STY D LP +N++T RVHT Y+ A +TGRLAS + Sbjct: 593 QQLAL-DYPLPKILLDYRSLAKLRSTYIDKLPQMVNRQTGRVHTNYAQAVAVTGRLASND 651 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIP++T G++IR AFI+P +ISADYSQIELRI+AHI++ L + F DI Sbjct: 652 PNLQNIPVRTPEGRRIREAFIAPSGWYIISADYSQIELRIMAHISQDAGLIRAFLGGQDI 711 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H AAE+FG+++ +V+ + RR+AK INF +IYG+S F LATQL I RS A +I RYF Sbjct: 712 HSATAAEVFGISVGQVNAEQRRYAKVINFGLIYGMSEFGLATQLGIDRSAARAFIDRYFA 771 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ +Y+++T+ RQNGYVET+ GRR+ +I S + + R ERAAINAP+QG+AA Sbjct: 772 RYPGVADYMQRTRELARQNGYVETVLGRRLQLPDIRSSQHNRRMGAERAAINAPMQGTAA 831 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AMISVH+ L L +K+++Q+HDELV EV E+E+ + ++ ME Sbjct: 832 DIIKLAMISVHQWLVKAPLQSKLIMQVHDELVLEVIEDELFVVKENLIILMENT----FK 887 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPLKV + V NW + Sbjct: 888 LDVPLKVEVGVGKNWDQ 904 >gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1] Length = 959 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 365/989 (36%), Positives = 548/989 (55%), Gaps = 85/989 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGS +++R F+ P LS GLP NAI G N L KL+ K+ +H AV FD Sbjct: 33 VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 87 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ + YKA+RP + E L Q+P + + GI I+I GFEADDII T Y Sbjct: 88 TKAPTFRHNLSETYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 147 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G V I + DKD+ QLV+ L D+ + D VI+K+G+ E++ AL Sbjct: 148 QACQQGHRVIISTGDKDMAQLVNDCVMLEDSFTGKLTDNAGVIEKFGVTSEQIADYLALM 207 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I GIP +G KTAA LL EY N++ IL N + IK + +I + ++ L+R L Sbjct: 208 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 266 Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300 + T++ + I + + L+ P L + + LEF K + + A + Sbjct: 267 ATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 321 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + +K ++I+ D T+ S QTP Sbjct: 322 ------HQPTDKAVSIDI---HDNTL----------------SSQTPIP----------- 345 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418 PI + SY I +D + + KL + F I T+T D H+K + I++ST D Sbjct: 346 -PIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 399 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E +I + D N L +LS K EN + KIG ++KYD + Sbjct: 400 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 454 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533 +YGI++ ++ D ML SYV+++ + H + ++A+ +L + T +++ + DK+ Sbjct: 455 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 514 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + +A E++++ +L+ + +K + L+ P +++QME GI ID Sbjct: 515 AMDVASHYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 574 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L Q+S E K +++L+ ++ E FNL+SPKQLG+ILF KL G KTKTGQ+ T Sbjct: 575 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 634 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L +I ++P+I +LE R LSK+KSTY D+L N +++ RVHT Y A T TGR Sbjct: 635 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 690 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+TD G+ IR AFI+P + +++ADYSQIELR++AH + L + F Sbjct: 691 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 750 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 ++LDIH AAEI G +I +V+P RR AK +NF ++YG+S F LA Q+ + R+ A DYI Sbjct: 751 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 810 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 KRYF R+P I EY+E+TK +Q GYV+TI GR+++ +I S I++ ERAAINAP+ Sbjct: 811 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 870 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAA+I + AMI+V + L K K+LLQ+HDELVFEV ++ +I +M+ A Sbjct: 871 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 928 Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974 ++ VPL V I + NW++ Sbjct: 929 TDTAKKLGWAVDFAVPLVVEIGIGENWEQ 957 >gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1] gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1] Length = 920 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 367/984 (37%), Positives = 536/984 (54%), Gaps = 96/984 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 15 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 69 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E+Y DYKANRP +P L Q+ + A +A G P + ++G EADD+I T Sbjct: 70 AKGKTFRDELYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 129 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLVS L +T+ E +D + V+ K+G+PPE++V AL Sbjct: 130 EAERRGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALI 189 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L RKL Sbjct: 190 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRKL 248 Query: 247 VMLRTDVPITIPLEHL---ILEDCNGPRLISFLKA-LEFTKLINRV----ATTYDCDAAN 298 V + T + LE + + D L+ + A F + V A DA + Sbjct: 249 VTVETACDLAPHLESIDASLKSDGEARDLLRDIFARYGFKTWLREVDSAPAEGGGADAPD 308 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 EP + IA++T + +T QF + Sbjct: 309 GEPAPV---------IAVDTPREYETIQTWEQFDA------------------------- 334 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 W KLE +F T +D ++ + + Sbjct: 335 ---------------------WFAKLEAAELTAFDTETTALDPMVARLVGL--------- 364 Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 SF VE ++ ++ H D + L ++L+ LK + E+ K+G ++KYD V Sbjct: 365 --SFAVEPGKAAYLPVA-HRGPDMPEQLPL-DDVLARLKSWLESPDRKKVGQHLKYDAQV 420 Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 L YGI + G E D +L SYVL+S R +HD+ S+A + L +++ I D Sbjct: 421 LANYGIELNGIEHDTLLESYVLESHR-THDMDSLALRHLGVKTIKYEDVAGKGAKQIGFD 479 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQI 590 +++ +Q E+A E++++ LQL L P++ E L VY ++ P+ V+ +ME G+ I Sbjct: 480 EVALAQAAEYAAEDADITLQLHRALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLI 539 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D L+ S EI+ L+ LE Y L+G +FNL SPKQ+G I F KL+ P KT +G Sbjct: 540 DDARLQAQSNEIATRLVDLEAQAYALAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAP 599 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +T Sbjct: 600 STDEEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVT 658 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRLAS +PNLQNIP++T G++IR AFI+ P +++SADYSQIELRI+AHI+ L + Sbjct: 659 GRLASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRA 718 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F DIHR AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A Sbjct: 719 FSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKL 778 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI RYF R+PG+ +Y+E T+ ++ GYVET+FGRR+ EIN R ERAAINA Sbjct: 779 YIDRYFARYPGVAQYMEDTRATAKERGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 838 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AAD+ + +MI+V L KLA++M++Q+HDELV EVP++E++ + + M Sbjct: 839 PMQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCG 898 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 L+VPL + NW+E Sbjct: 899 VA----KLKVPLVAEVGAGANWEE 918 >gi|71064954|ref|YP_263681.1| DNA polymerase I [Psychrobacter arcticus 273-4] gi|71037939|gb|AAZ18247.1| DNA polymerase I [Psychrobacter arcticus 273-4] Length = 956 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 361/1004 (35%), Positives = 541/1004 (53%), Gaps = 98/1004 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS +++R ++A P + GL NAI G N L KL++ +H AV FD Sbjct: 13 FILVDGSYYLFRTYHALPKTMQNSQGLVTNAIRGTLNALLKLMRRYHP----THMAVCFD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFR+ + +YKANRPK+ L Q+P + A GIP + I+G EADDII T Y Sbjct: 69 TKSPTFRHAMSEEYKANRPKMDIELAEQIPYIHRLVTALGIPLLRIEGAEADDIIGTLAY 128 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A EG V I + DKD+MQL++ L D+ + D V++K+GI P++M+ L Sbjct: 129 RAVAEGHHVVISTGDKDMMQLINDCVILEDSFTGKITDSTGVVEKFGINPDQMIDFLTLM 188 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS D I G+PGIG KTA LL EYGN++N+L N + IK + + N+LEYA+ ++ +L Sbjct: 189 GDSSDGIKGVPGIGKKTAKDLLNEYGNIDNMLKNVANIKGRAGK-NLLEYADDIPMNAQL 247 Query: 247 VMLRTDVPI----------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD- 295 + TD+ + T P H+ L + LEF N +A+ + Sbjct: 248 ATIVTDLEVGQDWQDLKINTDPCAHI-------DELRALYSELEFR---NELASLDHPNH 297 Query: 296 -AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 A + V TE++ K+ Q S++ D T + ++ Sbjct: 298 PANGAQSVAHSQADTESQA----------QIAKSLQSSAIGDVTDSKSHDR--------- 338 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 ++ I++ VQ L + + F I T+T + + + +S Sbjct: 339 ------------AWHTILDEPAFDNLVQLLAS--APHFVIDTETTSVYWRQAELVGLSFA 384 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 Q E +I L+ D + L ++ +L LK EN KIG ++KYD Sbjct: 385 VQAH------EAYYIPLTHSLEGDELTEKQLDRDTVLVRLKSILENSSIGKIGQHLKYDA 438 Query: 474 LVLHRYGISMRG---------FEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEIL 521 +L Y I++ G D ML SYV+++ + H + +A+ +L + + +++ Sbjct: 439 HILSLYDINLLGNIHDKPNNWAMDTMLASYVINAAVTRHGMDDLARHYLQTQTISFEDVA 498 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE----KLLHVYERLDKPMI 577 + D+++ ++A E++++ QL+ L KL + KLLH L+ P Sbjct: 499 GKGAKQVSFDQVAIDIASDYACEDADITYQLFELFSQKLADDTNNAKLLHA---LEIPTA 555 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 +++ QME GI I + L ++S + +++LE+ Y+++GE+FNL SPKQLG++LF KL Sbjct: 556 EILCQMEAHGILIKRPFLNELSKRFDEEIIALEKRAYEVAGEEFNLGSPKQLGEMLFDKL 615 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 G KTKTGQ+ T L +I D+P++ LE+R LSK+KSTY D+L N + T Sbjct: 616 GVAGGKKTKTGQYSTGEAVLSKI---DHPLVDITLEYRGLSKLKSTYTDALDNVADSETD 672 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 RVHT Y A T TGRL+S +PNLQNIPI+T G+ IR+AFI+P + +++ADYSQIELR+ Sbjct: 673 RVHTSYHQALTSTGRLSSTDPNLQNIPIRTATGRLIRQAFIAPEGRVILAADYSQIELRL 732 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 +AH + L F LDIH AAE+ G + V+ RR+AK INF ++YG+S F L Sbjct: 733 MAHFSGDKNLTHAFNEGLDIHAATAAEVLGKEVADVTATERRNAKAINFGLLYGMSAFGL 792 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 A QL++ RSEA DYI YF R+PG+ +Y+ T+ ++GYVETI GR+++ +IN Sbjct: 793 AKQLQMSRSEAQDYIDMYFERYPGVKDYMINTRASAYEHGYVETILGRKLYTPDINHSNR 852 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 ++ ERAAINAP+QGSAAD+ + AMI+V K L H+ KMLLQ+HDELVFEV ++ Sbjct: 853 MVKQGAERAAINAPLQGSAADLIKLAMIAVDKVLPKHQ--AKMLLQVHDELVFEVDANKV 910 Query: 938 TTASQIIVHSMEKACLP-------KINLRVPLKVNIKVSNNWQE 974 SQ+I +M+ +N VPL V NW E Sbjct: 911 DEISQLITDAMQNVLTATAVEKGWNVNFAVPLLVETDSGQNWDE 954 >gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB] gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB] Length = 901 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 347/987 (35%), Positives = 543/987 (55%), Gaps = 114/987 (11%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 +++ ++LVDGS+++YRAFYA LS GLP NA+ GF NML KLL+ + E + A Sbjct: 11 EKSTIYLVDGSNYLYRAFYAIRELSNSR-GLPTNAVYGFTNMLIKLLRERKPE----YIA 65 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR+E Y YKA R PE L+PQ+P ++ + F IP +E QG EADDII Sbjct: 66 ITFDLKGPTFRHETYAQYKATRKATPEALIPQIPYIKDIIRGFSIPILEQQGTEADDIIG 125 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T EG V I+S DKD++QL+SP + DT+ + D+ V +++G+ PEK+ + Sbjct: 126 TLACRFAGEGLKVIIVSGDKDMLQLLSPDVIMIDTMNDRTYDVAAVRERFGVDPEKVPEI 185 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 LTGD DNIPGIPGIG K A L++EYG++E IL N R++ K R+++ Y E A L Sbjct: 186 LGLTGDMSDNIPGIPGIGPKGALRLVEEYGSIEEILRNVERLRNPKLRDSVRVYGEQALL 245 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 SR L +RT +P+ T+D + A ++ Sbjct: 246 SRDLARIRTGIPL-----------------------------------TFDLEEARLQ-- 268 Query: 303 VLDINTTENKGIAIETEIDRDTT---IKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 E DR+ + +FSSL + S + Sbjct: 269 ----------------EPDREVLTRLFRELEFSSLLQEFSVVED---------------- 296 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 ++S+T + + + +++ L+ G +++ + + ++ I +A+ LD + Sbjct: 297 ---CGDNSHTLLRTPEAVAAFMEPLKEGGFLVLEMVLSSSEPMRAELIGVALG-LDSGNA 352 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 +I L ++ S ++L++E + L F ++ +GH++K +VL + Sbjct: 353 G-------YIPLEPGAAEKSA--SSLSEEQVFPVLFPFLADKKIALVGHDLKTVLIVLSQ 403 Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEIL-----KSRKSSI 528 G+ ++ D M+ +Y+L+ R ++++ I Q +L RK+++ K +S Sbjct: 404 KGVKVQNPLLDTMVAAYILNPARRGYELSEIVQDYLHRQVEPLRKKLVGGSSPKQSPASF 463 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 P +++ D A I +L L K+ L +++ ++ P++ V++ ME G+ Sbjct: 464 PPERLRD-----FACRRVEAIGELASTLIEKMEETGLRELFDSVEMPLVAVLAAMEEKGV 518 Query: 589 QIDQDLLKQVSAEISKNLLSLEE-NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 +D LLK++S E+ +LLSL E IY L+GE+FN++SPKQL ILF KL P G KTK Sbjct: 519 LLDLHLLKEMSQELG-HLLSLSEAKIYALAGERFNIASPKQLQTILFEKLNLPKGKKTKG 577 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G + T + L + ++ + IL +R ++K+KSTY D+LP+ IN RT R+HT Y+ Sbjct: 578 G-YSTDVEVLSNLAL-NHELPAEILAYRSMAKLKSTYIDALPSLINIRTGRIHTSYNQTV 635 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 TGRL+S PNLQNIPI+T G++IR+AFI+PP ++SADYSQIELR+LAH+++ L Sbjct: 636 AATGRLSSSNPNLQNIPIRTLEGKRIRQAFIAPPGWAIVSADYSQIELRVLAHLSEDPVL 695 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F DIH AA++FGV E ++ +MRR AK INF ++YG+S F L+ +L IP+ + Sbjct: 696 INAFAAGEDIHSRTAADVFGVFPEMINAEMRRQAKVINFGVLYGMSAFGLSRELGIPQKQ 755 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A YI YF ++ + Y++ R+ GYV T+ RR + EINS ++R + ER A Sbjct: 756 AQAYIDGYFKKYESVKTYLDGILQQARERGYVTTLLNRRRYLPEINSVNPAVRQLAERMA 815 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQG+AAD+ + AM+ + + + + + M +Q+HDELVFEVP+EE ++ Sbjct: 816 INAPIQGTAADLIKMAMLRIADLIREKGMKSAMTMQVHDELVFEVPQEEKIALMNLVRQE 875 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME + L+VPLKV+I NW E Sbjct: 876 MEGV----VELKVPLKVDIASGRNWDE 898 >gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024] gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024] Length = 923 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 352/973 (36%), Positives = 543/973 (55%), Gaps = 60/973 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS F++RA++A P L+ GL NAI G + + KL++ + +H AVIFD Sbjct: 4 FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQ----PTHMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T Sbjct: 59 TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A EG V I + DKD+ QLV+ L D+ K+ +D + V +K+G+ P +++ L Sbjct: 119 RAVLEGHHVLISTGDKDMAQLVNDHVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G KTAA LL EYG L+NI+ NA ++K K +NI + + +L +L Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANADQLK-GKLSQNIKDNLDNIKLDHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + D+P+ + L L D N L + LEF + + + ++++ + Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVEALRNLYTELEFRNQLQSLDHPNNPNSSSYK------ 291 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + ++ E+ +I+T +SL+ Q ++ + L E +L Q N D Sbjct: 292 --QQASQTVVQNEVKPAESIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLWQRMQNAD 349 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 + ++T+ + E +G F I D DA++ P+A Q+ D Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYV-PLAHNYENAPQQLDRD----- 398 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 +IL +K ENE KIGH++KYD + +GI ++G Sbjct: 399 ---------------------QILVQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKGW 437 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 + D ML SYVL++ + H + +A+ +LS+ T ++I ++I +A Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497 Query: 543 IENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V +L+ +L KL +L ++ ++ P+ ++S ME GI++D L ++S E Sbjct: 498 AEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 +K + LE +++ E FN++SPKQ+G+ILF KL G KT TGQ+ T+ LE+I Sbjct: 558 FAKTMEGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 ++P+ + ILE R L+K+KSTY D L + T RVHT Y A T TGRL+S +PNLQ Sbjct: 617 --EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+ +G++IR+AFI+P + L++ADYSQIELR++AH ++ L F++ D+HR Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G+ IE V+ RR AK +NF ++YG+S F L QL R E+ +YIK+YF R+PG Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRYPG 794 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I+EY+++T+ + G+VETI GRR++ +I++ +R ERAAINAP+QGSAADI + Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI V K L K K+LLQ+HDELVFE + S+ I ME + + VP Sbjct: 855 LAMIEVDKILP--KDQAKLLLQVHDELVFEADQNIAEELSKQIATVMESV----VKISVP 908 Query: 962 LKVNIKVSNNWQE 974 L V + NW + Sbjct: 909 LVVEVGQGQNWDD 921 >gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73] gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans] Length = 922 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 349/981 (35%), Positives = 534/981 (54%), Gaps = 69/981 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGSS++YRAF+A P L+ G P A+ G NML L+ R E + A + Sbjct: 2 SRLVLIDGSSYLYRAFHALPPLTNAA-GEPTGALFGVVNMLRATLKE-RPE----YVAFV 55 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123 D P TFR+ +YP YKANRP +P+ L Q+ P+ ++ A GI + G EADD+I T Sbjct: 56 VDAPGKTFRDALYPQYKANRPPMPDELRAQVEPMCQI-VHALGITILRESGVEADDVIGT 114 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-VIKKWGIPPEKMVCL 182 +G VTI + DKD QLV P L +T+ ++D + V++K+G+ P ++V L Sbjct: 115 LALQGVGDGMDVTISTGDKDFAQLVRPGVQLVNTMSGSRMDSDAAVMEKFGVLPHQIVDL 174 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD+IDN+PG+ G KTAA L +YG+L+ ++ NA IK K +N+ L Sbjct: 175 LALMGDTIDNVPGVEKCGPKTAAKWLADYGSLDGVIANADAIKGKIG-DNLRAALGRLPL 233 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 +R LV ++TDV ++ L L + +L + FT+ + D D P Sbjct: 234 NRDLVTIKTDVVLSGGPRTLGLREPEPEQLRGLYQRYGFTQALR------DLDGGVAAPY 287 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 V + +G T ++ ++ D L Sbjct: 288 VASEASPSLRG----------TAAGYARAAAAPDGA-------------------LDPAL 318 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 Y + + + +L +F TD +DA + + + SF Sbjct: 319 AAKGHYAAVTTAEQFDALLARLRAADGFAFDTETDALDAMRANLVGL-----------SF 367 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEI--LSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 +E D + D G + L+ L E+ K+G + KYD VL R+G Sbjct: 368 AIEPGHADY-LPLGHDYPGAPVQLDRVQALAALAPLLEDPAKRKVGQHGKYDLHVLRRHG 426 Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536 + + G+ +D ML S+VL+S S HD+ S+A+++L Y +++ I +++ Sbjct: 427 VQVHGYADDTMLESFVLNSTASRHDMDSLAKRYLGYDTVKYEDVAGKGAKQIAFSQVAID 486 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 +A E++++ L+L L +L E L VY ++ P++ V++++E G+ +D L Sbjct: 487 DATGYAAEDADITLRLHRALSAQLDAEPALARVYREIEMPLVPVLTRIEANGVCVDIAEL 546 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 ++ S +S+ +L+ ++ L+G FNL SPKQL +LF +LK P+ KT GQ T + Sbjct: 547 RKQSQVLSQRMLAAQQKAVALAGRSFNLDSPKQLQAVLFDELKLPALLKTPKGQPSTNEE 606 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE I + + + ILE+R L+K++STY D LP +N T RVHT Y A TGRL+S Sbjct: 607 ALEAI-ADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPETGRVHTSYHQAGAATGRLSS 665 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIPI+T+ G++IRRAF++PP +KLI+ DYSQIELRI+AH+++ L + F + Sbjct: 666 SDPNLQNIPIRTEDGRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSEDPGLLRAFSQGV 725 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+HR AAE+FG +E+VS RR AK INF ++YG+S F LA L I R EA DY+ Y Sbjct: 726 DVHRATAAEVFGRTLEQVSANERRAAKAINFGLMYGMSAFGLARNLGIGRGEAQDYVALY 785 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+P + +++E+ + R GYVET+FGRR++ ++IN+ + +R ERAAINAP+QG+ Sbjct: 786 FSRYPAVRDFMERMREQARTQGYVETLFGRRLYLNDINAKQQGLRAGAERAAINAPMQGT 845 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI +RAM+SV L+DH+ M+LQ+HDELVFEV + + + M A Sbjct: 846 AADIIKRAMVSVDTWLQDHRARALMILQVHDELVFEVDADFVEILLPEVTWRMAAAA--- 902 Query: 956 INLRVPLKVNIKVSNNWQEEN 976 L+VPL V+ V +NW E + Sbjct: 903 -ELKVPLVVDSGVGDNWDEAH 922 >gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] Length = 948 Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust. Identities = 344/998 (34%), Positives = 558/998 (55%), Gaps = 80/998 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFL+D + I+R +YA P ++ K G +AI GF N L+ +++ + + Sbjct: 1 MAVQKRLFLLDAYALIFRGYYALIKNPRVNSK--GQDTSAIMGFVNSLFDVIKREKPD-- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 H AV FD + R E+Y DYKANR + PE + +P+++ +A +P IEI+G EA Sbjct: 57 --HLAVAFDKGGSSERVEMYEDYKANRDETPEAIRIAVPIIQEILKAMHVPCIEIEGVEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175 DD+I T AEKE + V +++ DKD QLVS +Y + + + I+ WGIP Sbjct: 115 DDLIGTLAKQAEKEDYQVFMVTPDKDYAQLVSENIFMYKPAR-----MGNGIEIWGIPEV 169 Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 PE+++ + GD+ DNIPG+PG+G KTA +++YG LE +L N ++K Sbjct: 170 QKRFEVERPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIKQYGGLEGLLENTDQLK-G 228 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 K +E ++E AE RLSRKL + TD + E L + ++ LEF +L ++ Sbjct: 229 KMKEKVIENAELGRLSRKLATIMTDCDVKFDAEQYELSQPDADKVQEIFDELEFRRLKDQ 288 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347 + +A + + T K + + ++ Q++ I T Sbjct: 289 FIKIFSGEADSDTGAAVSGTETAKKLV---SSAEKAANAGAGQYNLFGGDEPAIEERNTR 345 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 + + K +++ Y + + +++ L S F T +D ++ + Sbjct: 346 KTI------KDTEH-----FYQSVAPGMAMNLFIKNLMKQTSVCFDTETTDLDPLQAELV 394 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 IA S K + ++ + ++++ L+ FFE E KIG Sbjct: 395 GIAFSWE--------KTKGFYVPFPSEKEE--------VQKLIEALRPFFEAEEIEKIGQ 438 Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI------ 520 N+KYD VL +Y + ++G D M+ Y+++ H++ +A+ +L+YT I Sbjct: 439 NLKYDIKVLAKYDVEVKGKLFDTMIAHYLINPDMR-HNMDVLAETYLNYTPVSIEELIGK 497 Query: 521 -LKSRKS--SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 K++KS +P+D Q E+A+E+++V LQL + +L +++ ++ P++ Sbjct: 498 KGKNQKSMADVPVD-----QQTEYAVEDADVTLQLKEHFQKELGEANTQKLFDEIEIPLV 552 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 V++ ME+ GI +DQ+ L +S ++ ++ SLE++IY+ +GE+FN+ SPKQLG+ILF KL Sbjct: 553 QVLADMELEGINLDQEFLGSLSEALNNDIASLEKSIYEEAGEEFNIGSPKQLGEILFDKL 612 Query: 638 KF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 K KT+TGQ+ +TA+D+ D+ I++++L++R LSK+KSTY D+LP +N +T Sbjct: 613 KLVDKPKKTRTGQY-STAEDVLSYLAPDHEIVQHVLDYRGLSKLKSTYVDALPAQVNAKT 671 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIE 754 RVHT Y TGRL+S PNLQNIPI+T+ G+++R+AF+ P + L++ADYSQIE Sbjct: 672 GRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFV-PRNEDYVLLAADYSQIE 730 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LRI+A +++ + + F+ DIH AA++F V I++V+ + R +AKT+NF IIYG+S Sbjct: 731 LRIIAALSQEETMMKAFQEGEDIHASTAAKVFNVPIDEVTREQRSNAKTVNFGIIYGVSA 790 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 F L+ Q + RSE+ + I Y+ +P + Y+ + +F R+NGYV T+ GRR + +INS Sbjct: 791 FGLSNQTDLTRSESKELIDTYYKTYPKLRNYMSEQVDFARENGYVSTVLGRRRYLKDINS 850 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 + +R ER A+NAPIQGSAADI + AMI +H L+D L TKMLLQ+HDELVF+V + Sbjct: 851 SNAVVRGAAERNAVNAPIQGSAADIIKIAMIKIHHKLKDKGLRTKMLLQVHDELVFDVYK 910 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E+ ++I ME A L VPL V + + +NW Sbjct: 911 SELEEVQELIKSEMEHA----FKLDVPLDVEVGLGDNW 944 >gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris] gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris] Length = 896 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 369/977 (37%), Positives = 557/977 (57%), Gaps = 96/977 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS+ +RAF+A P L+ G P AI G NM+ K++++ + E IA V+FD Sbjct: 5 LILIDGSSYFFRAFHALPPLTNS-KGQPTGAIYGVANMVKKIIKDYQPEEIA----VVFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 TFR+E YP+YKA+RP +P+ L Q PL++L QA G+P + I G EADD+I T Sbjct: 60 AKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQL-LQAMGLPLLIIDGVEADDVIGTLA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A ++G V I + DKD+ QLV+ L +T+ +DI+ V K+G+ PE+++ L Sbjct: 119 KQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS+DNIPG+ G KTA L EY L+N+L +A+ I K I EY Sbjct: 179 IGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEIGGK-----IGEY--------- 224 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LR +P HL L +L++ LE +N++ A+ E ++ Sbjct: 225 ---LRASIP------HLPLSK----KLVTIKTDLELPLNLNQLMPK----PADNEQLI-- 265 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 ++ R+ K S L + + ++++P+++ NN Sbjct: 266 -------------KLTRELEFK----SWLKELLQEEENQKSPKEMDAS----------NN 298 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLDQKDDTSFK 423 SY I + + W+ KLE S F I T+T +D ++ + I+++ ++D+ S+ Sbjct: 299 KSYEIITTHQQLNHWLNKLEQ--SQQFCIDTETTNLDVMQAELVGISLAV--EEDNASY- 353 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 I L+ HT G L KE +L+ LK EN KIG NIKYD VL YGI+ Sbjct: 354 -----IPLA-HTD----GSTQLVKEEVLTALKPILENPAIGKIGQNIKYDYSVLKNYGIT 403 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 ++G D ML SYVL+SG HD+ S+A K+L Y + +++ + D+I + Sbjct: 404 LKGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGAKQLRFDQIPVEKA 463 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +A E++++ L+L L P ++ + L +V ++ P++ V++ ME+ G+ ID +L++ Sbjct: 464 GIYAAEDADITLRLHHKLYP-MLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKH 522 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 + + + + SLE+ L+G+ FNL+SPKQL +ILF + K P AKT TGQ +TA+ + Sbjct: 523 GSRLKEQMKSLEQEAVQLAGKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQ-PSTAESVL 581 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 Q D + ILE+R LSK+ STY D+LP IN +T RVHT Y+ A TGRL+S +P Sbjct: 582 QELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDP 641 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+++ G+ IR AFI+P +++ADYSQIELRI+AH+++ L + F N DIH Sbjct: 642 NLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWDIH 701 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 A+EIF N+E VS + RR AK +NF +IYG+S F LA Q+ + R +A YI YF R Sbjct: 702 AATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHYIDTYFRR 761 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +P + EY+E+T+ Q GYVET+FGRR++ EINS + ER AIN P+QG+AAD Sbjct: 762 YPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGPMQGTAAD 821 Query: 899 ITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 I ++ M+++ K + KM++Q+HDELVFEV +E + II + ME+ + Sbjct: 822 IIKKTMLAISSWEHSQKSPSAKMIMQVHDELVFEVRKEAVEECHAIIHNLMEQT----VK 877 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPL V+I +NW + Sbjct: 878 LSVPLVVSIGTGSNWDD 894 >gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305] gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305] Length = 950 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 368/1002 (36%), Positives = 556/1002 (55%), Gaps = 92/1002 (9%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ K +G P A+ G NML L+ SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLIAQVE----PSHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP I I+G EADD+I T Sbjct: 62 FDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A K G V I + DKD+ QLV+ L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 AVQAAKAGKDVLISTGDKDMAQLVNEHIMLINTMTNTLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G+++ I N ++ + R + E Sbjct: 182 LRGDSSDNIPGVKGVGEKTALALLQGIGSIQTIYQNLDKVAELSFRGAKTFAPKLEAEKE 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + L N L++ EF K ++ V AN Sbjct: 242 MADLSYLLATIKTDVELEFRHDQLTTSPQNHDELVALFSQYEFKKWLSEVK-----GGAN 296 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 PV T + + + + T + +E T K+ ++R Sbjct: 297 --PV---------------------TQTEKVKIPNAYEVTQAVQNEPTFAKVNIDR---- 329 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS------ 412 Y I T + +W++K++ + TD++D+ + + I+++ Sbjct: 330 -------SKYETITETAALNRWLEKIQMEKCIALDTETDSLDSMRANLVGISLALASGEA 382 Query: 413 -------------TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT-KEILSYLKKFFE 458 + Q D S ++ET+ +L+ KN L L+ LK E Sbjct: 383 CYIPLAHKTLVTTSAGQGDLFSSEMETVGYELA---------KNQLNLTACLAQLKPILE 433 Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYT 516 N KIG NIKYD V +GI+++G D ML SY L+S GR H++ ++ ++L + Sbjct: 434 NPEIKKIGQNIKYDLTVFANHGINVQGVAFDTMLESYTLNSTGR--HNMDDLSDRYLGHK 491 Query: 517 RKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERL 572 E I K+ + D+I S E+A E+++V ++L +L +L+ E L+ +++ + Sbjct: 492 TIEFEAIAGKGKNQLTFDQIEISTAAEYAAEDADVTMKLHQVLWSQLVQEPTLVKLFDEI 551 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 + P++ V+S++E G+ ID LKQ S+EI + L LE+ ++ +G FNL+S KQL +I Sbjct: 552 ELPLVSVLSRIERNGVLIDPAKLKQQSSEIERRLAELEQEVHSEAGSVFNLASTKQLQEI 611 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 LF KL P KT G T + LE++ + + K ++E R LSK+KSTY D LP I Sbjct: 612 LFEKLGLPILKKTPKGAASTNEEVLEELAMMGHRVPKLLIEHRGLSKLKSTYTDKLPLMI 671 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752 N +T RVHT Y A T TGRL+S +PNLQNIPI+ + G++IR+AFI+ K+++ADYSQ Sbjct: 672 NAKTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIARKGYKIVAADYSQ 731 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELRI+AH+A + + F DIHR A+EIFGV +++V+ + RR+AK INF +IYG+ Sbjct: 732 IELRIMAHLANDEGMLKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIYGM 791 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S F L+ QL I R++A Y++ YF+R+P + +++ K + GYVET+ GRR++ EI Sbjct: 792 SEFGLSNQLGISRADAKQYMEAYFNRYPNVLQFMTDIKAKAAEKGYVETLLGRRLYLPEI 851 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 S + R ER AINAP+QG+AADI + AMI + + ++ H KM++Q+HDELVFEV Sbjct: 852 KSSNAMRRKAAERVAINAPMQGTAADIIKIAMIGIDRIIQ-HSDEIKMIMQVHDELVFEV 910 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+++ S +I MEKA I L VPL + + +NW E Sbjct: 911 REDKVEHYSALIKAEMEKA----IQLSVPLIAEVGIGDNWDE 948 >gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] Length = 937 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 361/992 (36%), Positives = 546/992 (55%), Gaps = 75/992 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDGSS++YRA++A DG P A+ G NML +L R + + + Sbjct: 1 MSNKPTLLLVDGSSYLYRAYHAMGQNLSAPDGAPTGAMYGVLNMLRRL----RADYVHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T +A + G+ V + + DKD+ QLV+ L +T+ E +DIE V +K+G+ P Sbjct: 113 ADDVIGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L+ ++ +AS IK K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIK-GKVGENLRAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R A + Sbjct: 232 LPRLPLSYDLVTIKTDVDL-----HTELSDG--------------IESLRRTAPKW---- 268 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E ERL Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAEMPS-----ERL 320 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 321 PEKAVAPEKLD-YQAVTTEAQFAAVLDKLSQADTIGIDTETTSLDAMNASLVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V SQ + + +++L LK EN KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSQTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQISF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ R RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +PP ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG E VSP+ RR+AKTINF +IYG+ + LA L I A Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK G+VET+FGRR++ +I++ ++ R ERAAI Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHK------LATKMLLQIHDELVFEVPEEEITTASQ 942 NAP+QG+A+D+ +RAMI V + L + + L +K+++Q+HDELV EVPE E+ + Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLSECEASLWDCLKSKLIMQVHDELVLEVPEAELDLVKE 905 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + M K +N VPL + NW+E Sbjct: 906 KLPQIMAKVDEGMLN--VPLVAEVGAGMNWEE 935 >gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1] gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1] Length = 941 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 359/987 (36%), Positives = 547/987 (55%), Gaps = 68/987 (6%) Query: 2 QKENH-LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 QK+ H LFL+D + IYRA +A P ++ K GL + GF N L ++L Sbjct: 3 QKQAHKLFLLDAMALIYRAHFAFSKNPRINSK--GLNTGVMLGFTNTLLEVLDKEN---- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD A TFR+ Y YKANR + PE + +P V+ +AF IP +E+ GFEA Sbjct: 57 PTHIGVAFDTHAPTFRHIQYEPYKANRQEQPEDIGVAIPWVKEIVKAFNIPILEMDGFEA 116 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWG 173 DDII T AE E F V +++ DKD QLV LY E + + + +KW Sbjct: 117 DDIIGTLAKQAEAENFTVYMMTPDKDYGQLVDDHIFLYKPAFMGKGIEVMGPKQICEKWD 176 Query: 174 IPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 I ++++ + L GDS+DNIPGIPGIG KTA LL++YG++E ++ N +K K++EN Sbjct: 177 IERVDQVIDMLGLMGDSVDNIPGIPGIGQKTAVKLLKQYGSVEELIKNTDDLK-GKQKEN 235 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 ++ +AE LS++L ++ DVP+ E L + N L + LEF L +R+ Sbjct: 236 VINFAEQGILSKQLATIKIDVPVNFVEEELKYDGFNEETLKTIFAELEFRTLASRIFKDG 295 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 A I+ N + + + T+ T +F + +N+ P+ Sbjct: 296 KTKKAAIKG---------NDQLGLFGDSKATTSTPTIEF-----EEETVNAAPIPEH--- 338 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 Y KI + I++ V L F T +++A ++ + I+ + Sbjct: 339 ------KNILTTAHQYHKIAGPEAIEELVSYLMLQDQLCFDTETTSVNAMEAELVGISFA 392 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 L E +I ++ T +IL LK F+NE LKIG NIKYD Sbjct: 393 YLSG--------EAYYIPCPADRAE--------TDQILEQLKPVFQNEKILKIGQNIKYD 436 Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----KSRKSS 527 L+L Y + ++G D ML Y+++ H + +A+++L+Y I K K+ Sbjct: 437 LLILKNYDVEVKGKLYDTMLAHYLIEP-EGKHSMDWLAEQYLNYQPVSITELIGKKGKNQ 495 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 + + QV E+A E++++ LQL L P L L ++ ++ P+I+V+++ME G Sbjct: 496 GNMRDVDVDQVTEYASEDADITLQLKEKLDPFLKENLLEKLFYEVENPLINVLTEMEFEG 555 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTK 646 I+ID L ++S + K +E +Y+++G +FNL+SPKQLGD+LF KLK P KTK Sbjct: 556 IRIDTKSLAEMSISLEKESKEIENKVYEIAGVRFNLASPKQLGDVLFEKLKLDPKAKKTK 615 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 TGQ+ T + L ++ ++ I + IL++RQ+ K+KSTY D+LP IN +T ++HT Y+ Sbjct: 616 TGQYATGEEILSKL-ANEHEIARAILDFRQMVKLKSTYVDALPTMINSKTGKIHTTYNQF 674 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKIT 765 TGRL+S+ PNLQNIPI+T+ G++IR+AF+ L++ADYSQIELRI+A + Sbjct: 675 VAATGRLSSINPNLQNIPIRTERGREIRKAFVPRDENHILLAADYSQIELRIMAAFSGDE 734 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 + + F+N DIH AA+IF V +E+V+ MRR AKT NF IIYGIS F L+ +L I R Sbjct: 735 SMIEAFKNGRDIHATTAAKIFQVPLEEVTSDMRRKAKTANFGIIYGISAFGLSQRLSISR 794 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 +EA + I YF FP + EY+++ R + YVET+ GRR + +INS +++R ER Sbjct: 795 TEAKEIIDAYFKEFPAVKEYMDRAIEKARNDEYVETLLGRRRYLRDINSRNATMRGFAER 854 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAPIQGSAAD+ + AMI VH ++ L +KM+LQ+HDELVF+ ++E+ + I Sbjct: 855 NAINAPIQGSAADLIKVAMIDVHNWMKKENLKSKMILQVHDELVFDAHKDEVEILKKNIP 914 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972 M A I + VP++V + ++W Sbjct: 915 ELMSNA----IKMDVPVEVEVGTGDDW 937 >gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] Length = 917 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 366/984 (37%), Positives = 536/984 (54%), Gaps = 96/984 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKANRP +P L Q+ + A +A G P + ++G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLVS L +T+ E +D + V+ K+G+PPE++V AL Sbjct: 127 EAERRGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRKL 245 Query: 247 VMLRTDVPITIPLEHL---ILEDCNGPRLISFLKA-LEFTKLINRV----ATTYDCDAAN 298 V + T + LE + + D L+ + A F + V A DA + Sbjct: 246 VTVETACDLAPHLESIDASLKSDGEARDLLRDIFARYGFKTWLREVDSAPAEGGGADAPD 305 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 EP + IA++T + +T QF + Sbjct: 306 GEPAPV---------IAVDTPREYETIQTWEQFDA------------------------- 331 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 W KLE +F T +D ++ + + Sbjct: 332 ---------------------WFAKLEAAELTAFDTETTALDPMVARLVGL--------- 361 Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 SF VE ++ ++ H D + L ++L+ LK + E+ K+G ++KYD V Sbjct: 362 --SFAVEPGKAAYLPVA-HRGPDMPEQLPL-DDVLARLKPWLESPDRKKVGQHLKYDAQV 417 Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 L YGI + G E D +L SYVL+S R +HD+ S+A + L +++ I D Sbjct: 418 LANYGIELNGIEHDTLLESYVLESHR-THDMDSLALRHLGVKTIKYEDVAGKGAKQIGFD 476 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQI 590 +++ +Q E+A E++++ LQL L P++ E L VY ++ P+ V+ +ME G+ I Sbjct: 477 EVALAQAAEYAAEDADITLQLHRALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLI 536 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D L+ S EI+ L+ LE Y L+G +FNL SPKQ+G I F KL+ P KT +G Sbjct: 537 DDARLQAQSNEIATRLVDLEAQAYALAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAP 596 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +T Sbjct: 597 STDEEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVT 655 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRLAS +PNLQNIP++T G++IR AFI+ P +++SADYSQIELRI+AHI+ L + Sbjct: 656 GRLASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRA 715 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F DIHR AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A Sbjct: 716 FSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKL 775 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI RYF R+PG+ +Y+E T+ ++ GYVET+FGRR+ EIN R ERAAINA Sbjct: 776 YIDRYFARYPGVAQYMEDTRATAKERGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 835 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AAD+ + +MI+V L KLA++M++Q+HDELV EVP++E++ + + M Sbjct: 836 PMQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCG 895 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 L+VPL + NW+E Sbjct: 896 VA----KLKVPLVAEVGAGANWEE 915 >gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M] gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M] Length = 920 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 366/984 (37%), Positives = 536/984 (54%), Gaps = 96/984 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 15 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 69 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKANRP +P L Q+ + A +A G P + ++G EADD+I T Sbjct: 70 AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 129 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLVS L +T+ E +D + V+ K+G+PPE++V AL Sbjct: 130 EAERRGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVLAKFGVPPERIVDYLALI 189 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L RKL Sbjct: 190 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRKL 248 Query: 247 VMLRTDVPITIPLEHL---ILEDCNGPRLISFLKA-LEFTKLINRV----ATTYDCDAAN 298 V + T + LE + + D L+ + A F + V A DA + Sbjct: 249 VTVETACDLAPHLESIDASLKSDGEARDLLRDIFARYGFKTWLREVDSAPAEGGGADAPD 308 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 EP + IA++T + +T QF + Sbjct: 309 GEPAPV---------IAVDTPREYETIQTWEQFDA------------------------- 334 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 W KLE +F T +D ++ + + Sbjct: 335 ---------------------WFAKLEAAELTAFDTETTALDPMVARLVGL--------- 364 Query: 419 DTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 SF VE ++ ++ H D + L ++L+ LK + E+ K+G ++KYD V Sbjct: 365 --SFAVEPGKAAYLPVA-HRGPDMPEQLPL-DDVLARLKPWLESPDRKKVGQHLKYDAQV 420 Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 L YGI + G E D +L SYVL+S R +HD+ S+A + L +++ I D Sbjct: 421 LANYGIELNGIEHDTLLESYVLESHR-THDMDSLALRHLGVKTIKYEDVAGKGAKQIGFD 479 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQI 590 +++ +Q E+A E++++ LQL L P++ E L VY ++ P+ V+ +ME G+ I Sbjct: 480 EVALAQAAEYAAEDADITLQLHCALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLI 539 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D L+ S EI+ L+ LE Y L+G +FNL SPKQ+G I F KL+ P KT +G Sbjct: 540 DDARLQAQSNEIAMRLVDLEAQAYALAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAP 599 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +T Sbjct: 600 STDEEVLQKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVT 658 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRLAS +PNLQNIP++T G++IR AFI+ P +++SADYSQIELRI+AHI+ L + Sbjct: 659 GRLASNDPNLQNIPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRA 718 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F DIHR AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A Sbjct: 719 FSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKL 778 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI RYF R+PG+ +Y+E T+ ++ GYVET+FGRR+ EIN R ERAAINA Sbjct: 779 YIDRYFARYPGVAQYMEDTRASAKERGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 838 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AAD+ + +MI+V L KLA++M++Q+HDELV EVP++E++ + + M Sbjct: 839 PMQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCG 898 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 L+VPL + NW+E Sbjct: 899 VA----KLKVPLVAEVGAGANWEE 918 >gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015] gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015] Length = 900 Score = 579 bits (1492), Expect = e-163, Method: Compositional matrix adjust. Identities = 345/967 (35%), Positives = 531/967 (54%), Gaps = 81/967 (8%) Query: 16 IYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75 ++RAF+A P L+ G P A+ G NM+ L++ + S V+FD TFRNE Sbjct: 1 MFRAFHALPPLTNSK-GAPTGAVKGVINMIRSLMKGFPE----SRVIVVFDAKGPTFRNE 55 Query: 76 IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135 IY +YKANRP +P+ L Q+ + +A G+P + + G EADD+I T A G Sbjct: 56 IYAEYKANRPPMPDDLRVQIEPIHEIIRAMGLPLLIVDGVEADDVIGTLAKQATDSGQDA 115 Query: 136 TIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195 + + DKD+ QLVSP L +T+ +D + VI+K+GIPPE+++ AL GD +DNIPG Sbjct: 116 LVSTGDKDMAQLVSPHVTLMNTMTNTTMDRDGVIEKFGIPPERIIDYLALVGDKVDNIPG 175 Query: 196 IPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPI 255 + G KTA L+ Y +++ ++ +A IK K E + E T +S L +R ++ + Sbjct: 176 VHKCGPKTALKWLEAYDSMQGVIDHAEEIK-GKIGEYLREAVPTLPMSYDLATIRCELEL 234 Query: 256 TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIA 315 L + + + RL++ K EF I + ++ E +G + Sbjct: 235 PQSLAEIQPVEADRERLLALFKDCEFKTWIRELEAGQGA-----------VDVAE-QGAS 282 Query: 316 IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK 375 +E D S + S+ P Y ++ Sbjct: 283 VEPVTD----------------ASAVKSDALPP------------------DYEVVLKQD 308 Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE---TIFIDLS 432 + +W+ +L SF T +++ ++ + + SF VE ++ L Sbjct: 309 QLDRWLVRLAQFELFSFDTETTSLNYMQAEIVGV-----------SFAVEYNKAAYVPLG 357 Query: 433 VHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDI 489 D G L ++ +L+ LK E+ K+G ++KYDK VL RYGI ++G D Sbjct: 358 ----HDYPGAPEQLDRDAVLNALKPLLEDTGKAKVGQHLKYDKNVLARYGIELKGIAHDT 413 Query: 490 MLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 ML SYVL+S HD+ S+A+++L + ++I + ++I Q +A E++ Sbjct: 414 MLASYVLNSVAGRHDMDSLAERYLDRHTVHYEDIAGKGAKQLTFNQIDLEQAAPYAAEDA 473 Query: 547 NVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 ++ LQL L PKL E L VY+ L+ P++DV++++E G+++D D L S E+++ Sbjct: 474 DITLQLHRELWPKLQTEPSLERVYQSLEVPLVDVLARIEQNGVKVDADALYAQSQELAEG 533 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 + EE ++ +GE FNL SPKQL ILF K P KT GQ T LE++ + Sbjct: 534 MRQAEEAAHNEAGESFNLGSPKQLQAILFEKQGLPVVRKTPKGQPSTAEDVLEELAAQGH 593 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 P+ + IL +R LSK+KSTY D LP I+ +T RVHT Y A TGRL+S +PNLQNIPI Sbjct: 594 PLPQWILRYRALSKLKSTYTDKLPQLIDSKTGRVHTSYHQAVAATGRLSSSDPNLQNIPI 653 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 +++ G++IR AF++ P K+++ADYSQIELRI+AH++ L + F+ DIH+ A+E+ Sbjct: 654 RSEEGRRIREAFVAEPGHKILAADYSQIELRIMAHLSGDETLIRAFKEGRDIHQATASEV 713 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 FGV +++V + RR AK +NF +IYG+S F LA QL I R EA Y+ YF R+PG+ +Y Sbjct: 714 FGVPLDEVESEQRRRAKAVNFGLIYGMSAFGLAKQLGISRGEAQGYVDTYFERYPGVRDY 773 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 +E+T+ R+ GYVET FGRR++ EI S R ER AINAP+QG+AADI +RAMI Sbjct: 774 MERTREQAREQGYVETEFGRRLYLPEIQSRNVPRRQHAERTAINAPMQGTAADIIKRAMI 833 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 ++H +LE +M++Q+HDELVFEVPE++ ++ M +A +LRV L V Sbjct: 834 AIHDALEKELPDVRMVMQVHDELVFEVPEDQAKQTQALVETKMVEAA----DLRVALDVE 889 Query: 966 IKVSNNW 972 ++++W Sbjct: 890 SDIADSW 896 >gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] Length = 923 Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust. Identities = 354/973 (36%), Positives = 543/973 (55%), Gaps = 60/973 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS F++RA++A P L+ GL NAI G + + KL++ + +H AVIFD Sbjct: 4 FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQP----THMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T Sbjct: 59 TPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A EG V I + DKD+ QLV+ L D+ K+ +D + V +K+G+ P +++ L Sbjct: 119 RAVLEGHHVLISTGDKDMAQLVNDHVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G KTAA LL EYG LENI+ NA ++K K +NI + + +L +L Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLENIIANADQLK-GKISQNIKDNLDNIKLDHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + D+P+ + L L D N L + LEF + + + +++ + V + Sbjct: 238 ASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSTYKQQVSQV 297 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + E+ I+T +SL+ Q ++ + L E +L Q N D Sbjct: 298 VVQD--------EVKPADAIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLLQRMQNAD 349 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 + ++T+ + E +G F I D DA++ P+A Q+ D Sbjct: 350 HFA--IDTETTSLDYRIAEMVG---FSIAFDAQDAYYV-PLAHNYENAPQQLDR------ 397 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 ++IL+ +K ENE KIGH++KYD + +GI ++G Sbjct: 398 --------------------EQILAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKGW 437 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 + D ML SYVL++ + H + +A+ +LS+ T ++I ++I +A Sbjct: 438 YFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYA 497 Query: 543 IENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V +L+ +L KL +L ++ ++ P+ ++S ME GI++D L ++S E Sbjct: 498 AEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVE 557 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 +K + LE +++ E FN++SPKQ+G+ILF KL G KT TGQ+ T+ LE+I Sbjct: 558 FAKTMEGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI- 616 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 ++P+ + ILE R L+K+KSTY D L + T RVHT Y A T TGRL+S +PNLQ Sbjct: 617 --EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQ 674 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+ +G++IR+AFI+P + L++ADYSQIELR++AH ++ L F++ D+HR Sbjct: 675 NIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRT 734 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G+ IE V+ RR AK +NF ++YG+S F L QL R E+ +YIK+YF R+PG Sbjct: 735 AAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRYPG 794 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I+EY+++T+ + G+VETI GRR++ +I++ +R ERAAINAP+QGSAADI + Sbjct: 795 IYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADIIK 854 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI V K L K K+LLQ+HDELVFE + S+ I ME + + VP Sbjct: 855 IAMIEVDKILP--KDQAKLLLQVHDELVFEADQNIAEELSKQIAKVMESV----VEISVP 908 Query: 962 LKVNIKVSNNWQE 974 L V + NW + Sbjct: 909 LVVEVGQGKNWDD 921 >gi|71736059|ref|YP_272564.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556612|gb|AAZ35823.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A] Length = 921 Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust. Identities = 350/989 (35%), Positives = 534/989 (53%), Gaps = 96/989 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P L+ GLP A+ G NML L R++ S FAV+FD Sbjct: 6 LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA + + Y LE + R K + E+ Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ I L+ L + + +L+ LEF I + D A Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E + ++ T E K A E ++ SQF + Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 W++KL +F I ++ DA ++ + ++ + + + Sbjct: 326 ---------------------WLKKLNAAPLFAFVIQSNGTDAQRAQLVGLSFA-IQTHE 363 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-- 476 + ++ + +D+ +L LK E+ K+G + K+ +L Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414 Query: 477 ------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526 GI ++G D +L SYVLDS + HD S+ K+L++T +EI Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585 + D+I+ Q ++A E +++ L+L + +L + L V ++ P++ V++ +E Sbjct: 475 QLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIER 534 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P +KT Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Y Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A+ Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F N LD+HR AAE+FGV +E V+ MRR AK INF +IYG+S F LA Q+ + R Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 ++ Y+ RYF R+PG+ +Y+E+T+ + G+VETIFGRR++ +IN+ S+R ER Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAP+QG+AADI ++AM++V+ LE+ L +++LQ+HDELV EV E+ + S+ I Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A L VPL V + V NNW E Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDE 919 >gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72] Length = 956 Score = 578 bits (1491), Expect = e-162, Method: Compositional matrix adjust. Identities = 363/989 (36%), Positives = 547/989 (55%), Gaps = 85/989 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGS +++R F+ P LS GLP NAI G N L KL+ K+ +H AV FD Sbjct: 30 VILVDGSYYLFRCFHGLPPLSNSQ-GLPTNAIRGVLNALNKLI----KKYHPTHMAVAFD 84 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ + YKA+RP + E L Q+P + + GI I+I GFEADDII T Y Sbjct: 85 TKAPTFRHNLSEAYKAHRPPMDEALRIQIPYIHEMIEKLGIALIKIDGFEADDIIGTLAY 144 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G V I + DKD+ QLV+ L D+ + D VI+K+G+ E++ L Sbjct: 145 QACQQGHRVIISTGDKDMAQLVNDCVILEDSFTGKLTDNAGVIEKFGVTSEQIADYLTLM 204 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I GIP +G KTAA LL EY N++ IL N + IK + +I + ++ L+R L Sbjct: 205 GDASDGISGIPKVGQKTAAKLLNEYQNIDGILANLANIKGAVGK-SIADNQDSIPLNRIL 263 Query: 247 VMLRTDVPITIPLEHLILEDCN------GPRLISFLKALEFTKLINRVATTYDCDAANIE 300 + T++ + I + + L+ P L + + LEF K + + A + Sbjct: 264 ATIVTNLKLAISFDDITLDHSQETTIKRAPALYALFEELEFKKEMAQTAELLNLP----- 318 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + +K ++I+ D T+ S QTP Sbjct: 319 ------HQPTDKAVSIDI---HDNTL----------------SSQTPI------------ 341 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKD 418 PI + SY I +D + + KL + F I T+T D H+K + I++ST D Sbjct: 342 LPIKDISYHTITTQQDFTKLLDKLNH--TPYFAIDTETTDINWQHAKLVGISVSTAD--- 396 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E +I + D N L +LS K EN + KIG ++KYD + Sbjct: 397 -----YEGYYIPVGHTADFDVLLDNQLPIDTVLSAFKPILENPNIGKIGQHLKYDAHIFK 451 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533 +YGI++ ++ D ML SYV+++ + H + ++A+ +L + T +++ + DK+ Sbjct: 452 KYGINISPWQMDTMLASYVINAAATRHGMDALAKHYLGVQTTTFEDVAGKGAKQLSFDKV 511 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + ++A E++++ +L+ + +K + L+ P +++QME GI ID Sbjct: 512 AMDAASQYACEDADITFRLFNRFNQHINQDKTAAQLLYHLEMPTAQILTQMEHDGILIDT 571 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L Q+S E K +++L+ ++ E FNL+SPKQLG+ILF KL G KTKTGQ+ T Sbjct: 572 DFLGQLSDEFDKKIMALQIEAERIADEPFNLASPKQLGEILFDKLGIAGGKKTKTGQYAT 631 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L +I ++P+I +LE R LSK+KSTY D+L N +++ RVHT Y A T TGR Sbjct: 632 SEAVLSKI---EHPLIDVVLEHRSLSKLKSTYTDTLANAADEQG-RVHTSYHQALTSTGR 687 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+TD G+ IR AFI+P + +++ADYSQIELR++AH + L + F Sbjct: 688 LSSSDPNLQNIPIRTDTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFN 747 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 ++LDIH AAEI G +I +V+P RR AK +NF ++YG+S F LA Q+ + R+ A DYI Sbjct: 748 HNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQDYI 807 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 KRYF R+P I EY+E+TK +Q GYV+TI GR+++ +I S I++ ERAAINAP+ Sbjct: 808 KRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINAPL 867 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAA+I + AMI+V + L K K+LLQ+HDELVFEV ++ +I +M+ A Sbjct: 868 QGSAAEIIKLAMIAVDEVLP--KDDAKLLLQVHDELVFEVDTDKAHDIGNLIKTAMQNAL 925 Query: 953 LP-------KINLRVPLKVNIKVSNNWQE 974 ++ VP V I + NW++ Sbjct: 926 TDTAKKLGWAVDFAVPFVVEIGIGENWEQ 954 >gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] Length = 929 Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust. Identities = 348/977 (35%), Positives = 527/977 (53%), Gaps = 62/977 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R G P AI G NML +L R + A + A +FD Sbjct: 4 LLLVDGSSYLYRAFHAMPDL-RSPQGEPTGAIYGVLNMLRRL----RADYPADYSACVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ YP+YKA+RP +P+ L Q+ + A G + + G EADD+I T T+ Sbjct: 59 AKGKTFRDDWYPEYKAHRPPMPDDLRAQIEPLHEVVAAAGWNILMVDGVEADDVIGTLTH 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A G + + DKDL QLV+P L +T+ E +D V+ K+G+ P ++V AL Sbjct: 119 QASSNGAHCIVSTGDKDLTQLVNPHVMLVNTMSNEVLDEAGVLAKFGVEPARIVDYLALV 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG L+N+L +A + EN+ + R+L Sbjct: 179 GDTVDNVPGVAKCGPKTAVKWLTQYGTLDNLLAHADEVG-GAVGENLRAARDWLPQGRRL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 V ++ DV + + L + ++ + + F + V +Y A+ Sbjct: 238 VTVKCDVALDRKFDELSAPAADIEKMKALFERFGFKSWLREV--SYPSPASG-------- 287 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 +G E R +S +LS Q Q L + Sbjct: 288 -----RGAGGE---GRSGDASSSLTPTLSQGARGQEQRQFEQP-------ALPSTTNDTS 332 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y I+ + W+ KL S T +D ++ + I SF +E Sbjct: 333 NYQTILTDAQLDAWLHKLMAAPLVSLDTETTGLDGMTAQLVGI-----------SFSIEA 381 Query: 427 ---IFIDLSVH--TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 ++ L+ H + D G+ + L LK + E+ K+G N+KYD+ + +GI Sbjct: 382 HQAAYLPLAHHYPGAPDQLGR----EHALQKLKHWLESPAHKKLGQNLKYDQHIFANHGI 437 Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537 + G ED +L SYVL+S H++ ++A + L + +++ I D++ Sbjct: 438 AFAGIAEDTLLQSYVLES-HKPHEMGNLALRHLGLSTVSYADVVGKGAKQIGFDQVDLET 496 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ LQL L P+L +L VY +++ P+ +V+ +ME G+ ID +L + Sbjct: 497 ATRYAAEDADITLQLHQTLSPQL-QGRLDAVYRQIELPVREVLFKMERNGVLIDSAMLGR 555 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E+ L +E+ ++ +G+ FNL+SPKQL +ILF KL+ P KT +G T + L Sbjct: 556 QSHELGLKLNEIEKQAFEAAGQPFNLNSPKQLSEILFDKLQLPVKKKTPSGTPSTDEEVL 615 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 +++ D P+ K +LE+R ++K+KSTY D LP +N +T RVHT Y+ A +TGRLAS + Sbjct: 616 QELAL-DYPLPKLLLEYRGMAKLKSTYTDKLPQMVNAKTGRVHTSYAQAVAVTGRLASSD 674 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+T G++IR AFI+P +++SADYSQIELRI+AH++ L + F DI Sbjct: 675 PNLQNIPIRTPEGRRIREAFITPAGSRIVSADYSQIELRIMAHLSGDEGLLKAFAAGEDI 734 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+F V ++ VS + RR+AK INF +IYG+S + LA QL I S A YI YF Sbjct: 735 HRATAAEVFSVALDAVSSEQRRYAKVINFGLIYGMSAYGLAAQLNIETSAAKQYIDLYFA 794 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ Y++ T+ + G+VET FGRR+ EIN R ERAAINAP+QG+AA Sbjct: 795 RYPGVKRYMDSTREQAKAQGFVETWFGRRLWLPEINGANGMRRQAAERAAINAPMQGTAA 854 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 D+ + AMI+V LE KLATK+++Q+HDELV EVP+ E+ + M Sbjct: 855 DLIKLAMIAVQDWLETEKLATKLIMQVHDELVLEVPQGELARVKDKVRELMCNVA----E 910 Query: 958 LRVPLKVNIKVSNNWQE 974 L+VPL+V + NW E Sbjct: 911 LKVPLEVGMGEGGNWDE 927 >gi|91203357|emb|CAJ71010.1| stongly similair to DNA polymerase I [Candidatus Kuenenia stuttgartiensis] Length = 887 Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust. Identities = 357/983 (36%), Positives = 546/983 (55%), Gaps = 116/983 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 F++DG S Y+AFYA DG P NA+ GF ML KLL+ R + + A++FD Sbjct: 5 FFIIDGHSHCYQAFYAITAKLTTPDGTPANAVYGFTRMLLKLLREQRPD----YLALVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 T R++ Y DYKA R + PE L Q+PL+ +AFGIP +G+EADD+I + Sbjct: 61 TKYTTNRHQKYSDYKATRKETPEDLQVQIPLIYKVVRAFGIPVYAAKGYEADDVIGSLVT 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + EK+ V I+++DKDL QL+ P + K E ID + + + GI P ++V + AL Sbjct: 121 VLEKKEIEVVIVTSDKDLEQLIGPKVKILHAKKGEIIDSDVLFTQKGIMPNQVVDVLALA 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD DNIPG+PGIG KTA L++++G+LE++L N I KKR+EN+ +A+ AR SR Sbjct: 181 GDVSDNIPGVPGIGNKTALDLIKKWGSLESVLANVGHISGKKRQENLRTFADQARFSR-- 238 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 E L N + T D ++ + Sbjct: 239 ---------------------------------ELLDLYNDIPLTVDMESCRL------- 258 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSL-SDQTSKINSEQTPQKL---------FLERLQ 356 +T EN I ++ F++L SD + N+E T L FLE++ Sbjct: 259 STGEN--------IKLRKLFRSFGFNTLLSDMVATANTEATHYYLINTIEQFHGFLEQIS 310 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 K + I+ LET G+ D + + ++ S +Q Sbjct: 311 KKDAFAID-------------------LETTGT----------DPLKAHIVGLSFS-WEQ 340 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 K+ ++ V + + + H + D +L ++K E+E KIG NIKYD LVL Sbjct: 341 KE--AYYVPLMAPENTRHLTADI---------VLPEIRKVLEDESKKKIGQNIKYDLLVL 389 Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 ++ I ++G + D M+ SY+L+ + +H++ IA ++LSY E++ S K I +DK Sbjct: 390 KKHNIGLKGIYFDSMIASYLLNPAKRNHNLDDIAFEYLSYKTIMIAELIGSGKQQITMDK 449 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + +V ++A +++++ +L + P L E L +++ ++ P+I V+++ME GI I+ Sbjct: 450 VPVDKVCQYACQDADITFRLAETMAPLLKKEGLWQLFQEIEIPLIYVLAEMEGNGICINA 509 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L+Q+S +++ L LE+ IY ++ ++FN+SS KQLG ILF K + P +TKTG T Sbjct: 510 DFLRQMSGDLAAQLQCLEKEIYRVAEQEFNISSHKQLGAILFDKFQLPKLRRTKTG-VST 568 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A L + +P+ K LE+RQL+K+KSTYAD+LPN +N+ T ++HT ++ T TGR Sbjct: 569 DANVLASL-AWRHPLPKLALEYRQLAKLKSTYADALPNLLNQDTGKIHTTFNQTVTSTGR 627 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 L+S PNLQNIP+KTD+G++IRRAFI S +SADYSQIELRILAH ++ T L + F Sbjct: 628 LSSSNPNLQNIPVKTDIGKQIRRAFIPSGKNAVFLSADYSQIELRILAHFSEDTALMEAF 687 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 LDIH VA+ I+ V +E V+ +MRR+AK INF IIYG++ + L+ + ++A D+ Sbjct: 688 REDLDIHAAVASSIYHVPLENVTTEMRRNAKAINFGIIYGLNEYGLSRDTGLSLNDAKDF 747 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I YF + G+ E+ +K ++ GYV+T+F R+ +IN+ RN+ ER AIN Sbjct: 748 IDAYFTLYQGVREFRDKVVEEAKEMGYVKTLFNRKRAIPDINAKNKRFRNLAERIAINTI 807 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGSAAD+ + AM +++ L+ +MLLQIHDEL+FEV + + ++ M A Sbjct: 808 IQGSAADLIKVAMNNIYSKLKCGDYEARMLLQIHDELLFEVGVQALEQTRIMVQEEMGHA 867 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + LRVP+KVNIK NW E Sbjct: 868 ----VTLRVPVKVNIKTGKNWME 886 >gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] Length = 952 Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust. Identities = 371/996 (37%), Positives = 549/996 (55%), Gaps = 76/996 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ + G P A+ G NML L+ SH AV Sbjct: 6 KNPLVLVDGSSYLYRAFHAFPPLTNRL-GEPTGAMYGVLNMLKSLISQVN----PSHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFR+E++ YK++RP +P+ L PQ+ PL R+ +A GIP I I+G EADD+I Sbjct: 61 VFDAKGKTFRDELFKQYKSHRPPMPDDLRPQIEPLHRI-IKALGIPLISIEGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A K+G V I + DKD+ QLV+ L +T+ +D E VI+K+GIPPE ++ Sbjct: 120 TLAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDF 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR--ENILEYAET- 239 AL GDS DNIPG+ G+G KTA LLQ G+LE I N +I R +N E Sbjct: 180 LALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANLDQIATLSFRGAKNFAPKLEAE 239 Query: 240 ---ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A LS L ++TDV + + + L+ + + L + EF + +N V Sbjct: 240 KANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELAQLFEHYEFKRWLNEVNQ------ 293 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 N PV T + + T + +E+ + Sbjct: 294 -NANPV---------------------TQTSAEKVPNNYQVTQAVRNEENVANVV----- 326 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS---- 412 I+ Y + + + W++KL + TD++DA + + I+ + Sbjct: 327 -----EIDRSKYETVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFALENG 381 Query: 413 -----TLDQKDDTSFKVETIFID--LSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLK 464 L K + +F D S S D KN L LS LK N K Sbjct: 382 EACYIPLGHKQKAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKK 441 Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KE 519 IG NIKYD + YGI ++G D M+ SY +S GR H++ +A ++L + +E Sbjct: 442 IGQNIKYDLTIFANYGIELQGVAFDTMIESYTQNSTGR--HNMDDLAARYLGHKTIPFEE 499 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMID 578 + K+ + DKI ++ E+A E+++V ++L +L KL E +L+ +++ ++ P++ Sbjct: 500 LAGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVG 559 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V+S++E G+ ID L SAEI K L +E ++ +G+ FNL+S KQL +ILF KL Sbjct: 560 VLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLG 619 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P KT G T + L+++ + + K ++E R LSK+KSTY D LP INK+T R Sbjct: 620 LPVLKKTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGR 679 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT Y+ A T TGRL+S +PNLQNIPI+ + G++IR+AF++ K+++ADYSQIELRI+ Sbjct: 680 VHTSYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIM 739 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH++ + F DIHR AAEIFGV + +V+ + RR AK INF +IYG+S F L+ Sbjct: 740 AHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGLS 799 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL I R+EA Y+ YF R+P + +++ + + GYVET+FGRR++ +I S + Sbjct: 800 NQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSGNAI 859 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 +R ER AINAP+QG+AADI + AMI + ++ D+ KM++Q+HDELVFEV ++I Sbjct: 860 LRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDND-EIKMIMQVHDELVFEVKADKID 918 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 SQ+I MEKA I+L+VPL + V NW E Sbjct: 919 HYSQLIKTEMEKA----ISLKVPLIAEVGVGENWDE 950 >gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9] gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9] Length = 932 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 354/980 (36%), Positives = 534/980 (54%), Gaps = 69/980 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P L R DG P A+ G NML +L +E A + A IFD Sbjct: 4 LLLIDGSSYLYRAFHAMPDL-RSPDGAPTGAVYGMINMLRRL----EREVAADYSACIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++YP YKA+RP +P+ L Q+ V A +A G P + + G EADD+I T Sbjct: 59 AKGKTFRDDLYPAYKAHRPPMPDDLRQQIAPVHAAVRALGWPLLMVDGVEADDVIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A GF V I + DKD+ QLV+P L +T+ EE +D V K+G+PP +++ LT Sbjct: 119 NAAAAGFQVVISTGDKDMAQLVTPQVKLVNTMTEEWLDEAGVAGKFGVPPARIIDYLTLT 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD +DN+PG+ G KTA L+ YG+L+ ++ A+ + K EN+ LSR+L Sbjct: 179 GDKVDNVPGVDKCGPKTAVKWLENYGDLDTLMAQANEVGGKVG-ENLRTALAWLPLSRRL 237 Query: 247 VMLRTDVPITIPL----EHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 V ++TDV + L ++L+ + P + + + L F + Y A EPV Sbjct: 238 VTIKTDVDLATELPQGFDNLLRPAVDRPAMSALCRELGFRTWLKE----YGDGTALTEPV 293 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 R + F++ ++ + P Sbjct: 294 A----------------PARPEAVADDLFAAAPVAADMPSAPAAASPALVT--------P 329 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 Y ++ + W+ +L A+F TD++D ++ + + SF Sbjct: 330 TAEARYQTVLTEAALADWLARLAAAPRAAFDTETDSLDPMQARIVGV-----------SF 378 Query: 423 KV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 V E ++ L+ H + + L ++ +L+ LK + EN K+ N YD+ VL Sbjct: 379 AVTPGEAAYVPLA-HVAPGV--EPQLDRDRVLAQLKPWLENPAAAKVLQNANYDRHVLAN 435 Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 +GI + G +D MLM YVL S H++ ++A++ L ++I I ++ Sbjct: 436 HGIRLAGVADDTMLMDYVLAS-HERHNMDAMAERELGLATIKYEDICGKGARQIGFAEVD 494 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 +A E+++V L+L +L KL + +Y ++ P V+ ME TG+ ID+ Sbjct: 495 LDTATRYAAEDADVTLRLRDVLAGKLDGARDT-LYSSIELPTAAVLFAMERTGVLIDRAE 553 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKT 652 L + S + + +L++E +Y+L+G+ FNL+SPKQL DILF KL + KT +G + T Sbjct: 554 LARQSQVLGEEMLAIETEVYELAGQPFNLNSPKQLSDILFNKLAIDTKGVKKTASGGYST 613 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 LE++ D P+ K +L +R L+K+KSTY D LP IN T RVHT YS AS +TGR Sbjct: 614 DESVLEKL-AEDYPLPKALLRYRGLAKLKSTYTDKLPAMINPDTGRVHTHYSQASVVTGR 672 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 LAS +PNLQNIPI+TD G+++R AF++P ++SADYSQIELRI+AH++ L F Sbjct: 673 LASSDPNLQNIPIRTDEGRRVREAFVAPAGSCIVSADYSQIELRIMAHLSGDAGLIAAFR 732 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR A+E+FGV +E VS + RR+AKTINF +IYG+S F LA L I A +I Sbjct: 733 EGRDIHRATASEVFGVPLEAVSAEQRRYAKTINFGLIYGMSAFGLAKSLEIDNKAAQTFI 792 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 +RYF R+PG+ +Y+++T+ R+ G+VET+FGRR++ EI S ++ R ERAAINAP+ Sbjct: 793 ERYFARYPGVQDYMQRTREAAREQGWVETVFGRRLYLPEIRSSNAARRAGAERAAINAPM 852 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AAD+ + AMI V L+ +LA+++++Q+HDELV EVPE E + M Sbjct: 853 QGTAADLIKLAMIRVADWLQREQLASRLIMQVHDELVLEVPEAERERVCAALPQEMAAVA 912 Query: 953 LPKINLRVPLKVNIKVSNNW 972 L VPL + NW Sbjct: 913 ----GLAVPLVAEVGSGANW 928 >gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 952 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 371/996 (37%), Positives = 549/996 (55%), Gaps = 76/996 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ + G P A+ G NML L+ SH AV Sbjct: 6 KNPLVLVDGSSYLYRAFHAFPPLTNRL-GEPTGAMYGVLNMLKSLISQVN----PSHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFR+E++ YK++RP +P+ L PQ+ PL R+ +A GIP I I+G EADD+I Sbjct: 61 VFDTKGKTFRDELFKQYKSHRPPMPDDLRPQIEPLHRI-IKALGIPLISIEGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A K+G V I + DKD+ QLV+ L +T+ +D E VI+K+GIPPE ++ Sbjct: 120 TLAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDF 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR--ENILEYAET- 239 AL GDS DNIPG+ G+G KTA LLQ G+LE I N +I R +N E Sbjct: 180 LALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANLDQIATLSFRGAKNFAPKLEAE 239 Query: 240 ---ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A LS L ++TDV + + + L+ + + L + EF + +N V Sbjct: 240 KANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELAQLFEHYEFKRWLNEVNQ------ 293 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 N PV T + + T + +E+ + Sbjct: 294 -NANPV---------------------TQTSAEKVPNNYQVTQAVRNEENVANVV----- 326 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS---- 412 I+ Y + + + W++KL + TD++DA + + I+ + Sbjct: 327 -----EIDRSKYETVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFALENG 381 Query: 413 -----TLDQKDDTSFKVETIFID--LSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLK 464 L K + +F D S S D KN L LS LK N K Sbjct: 382 EACYIPLGHKQKAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKK 441 Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KE 519 IG NIKYD + YGI ++G D M+ SY +S GR H++ +A ++L + +E Sbjct: 442 IGQNIKYDLTIFANYGIELQGVAFDTMIESYTQNSTGR--HNMDDLAARYLGHKTIPFEE 499 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMID 578 + K+ + DKI ++ E+A E+++V ++L +L KL E +L+ +++ ++ P++ Sbjct: 500 LAGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVG 559 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V+S++E G+ ID L SAEI K L +E ++ +G+ FNL+S KQL +ILF KL Sbjct: 560 VLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLG 619 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P KT G T + L+++ + + K ++E R LSK+KSTY D LP INK+T R Sbjct: 620 LPVLKKTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGR 679 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT Y+ A T TGRL+S +PNLQNIPI+ + G++IR+AF++ K+++ADYSQIELRI+ Sbjct: 680 VHTSYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIM 739 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH++ + F DIHR AAEIFGV + +V+ + RR AK INF +IYG+S F L+ Sbjct: 740 AHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGLS 799 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL I R+EA Y+ YF R+P + +++ + + GYVET+FGRR++ +I S + Sbjct: 800 NQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSGNAI 859 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 +R ER AINAP+QG+AADI + AMI + ++ D+ KM++Q+HDELVFEV ++I Sbjct: 860 LRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDND-EIKMIMQVHDELVFEVKADKID 918 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 SQ+I MEKA I+L+VPL + V NW E Sbjct: 919 HYSQLIKTEMEKA----ISLKVPLIAEVGVGENWDE 950 >gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069] gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069] Length = 915 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 357/982 (36%), Positives = 537/982 (54%), Gaps = 80/982 (8%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 +K+ LVDGSS+++RA++ P L R G+ A+ G NML L+ KE Sbjct: 3 EKKAPFILVDGSSYLFRAYH-VPQLQRMTNSSGMMTGAVFGVINMLKSLI----KEYEPE 57 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 A++FD TFRN++YP+YKANRP +PE L Q+ + +A G+P + I G EADD Sbjct: 58 QMAMVFDAKGKTFRNDLYPEYKANRPPMPEDLRQQIEPIHEIVKAMGLPLLVIDGVEADD 117 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKKWGIPPE 177 +I T A KEG I + DKD+ QLVS L +T+ + D + VI+K+G+ PE Sbjct: 118 VIGTLAKQACKEGRETLISTGDKDMAQLVSDHVTLINTMDKTNPITDRDRVIEKFGVKPE 177 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ AL GD +DNIPG+ G KTA L++YG+L+ ++ +A I K EN+ E Sbjct: 178 QIIDYLALVGDKVDNIPGVDKCGPKTAVKWLEQYGSLQGVIDHADEIG-GKIGENLREAI 236 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + LS +L ++ D + E L + + L +EF + + V Sbjct: 237 DRLPLSYELATIKLDCDLEFKPEQLNIGQPDLKELKKLYSDMEFRRWLTEVLKEL----- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +G A ++ D +SE P ++R Sbjct: 292 -------------GEGEAGDSAGD--------------------DSEDGPSVALVDR--- 315 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I+ K++ +W++KLE + +F T +++ ++ + ++ + LD Sbjct: 316 --------SKYETILEQKELDKWIKKLEEVELFAFDTETTSLNYIEAELVGMSFA-LDNG 366 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++ +D E+L LK E+E K+G N+KYD VL Sbjct: 367 EAAYLPVAHSYMGAPEQLERD---------EVLKQLKPLLESEKHKKVGQNLKYDMSVLA 417 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 Y I + G E D ML SY L+S S HD+ ++A L++ +EI K+ + D+I Sbjct: 418 NYDIELAGIEFDTMLESYCLNSVASRHDMDTLALHHLNHVNIKFEEIAGKGKNQLTFDQI 477 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q +A E++++ ++L L P+L E +++ ++ P++ ++S++E G+ +D Sbjct: 478 EVEQAAPYASEDADITMRLHQKLWPELKQNEGPTQIFQHIEMPLLRILSKVERNGVLVDG 537 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 LL + S K L LE+ Y+++G++FNL SPKQL I + +L P KT GQ T Sbjct: 538 KLLLEKSHLFEKRLKELEKEAYEIAGKEFNLGSPKQLQVIFYEELGLPILKKTPKGQPST 597 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + L+++ D P+ K ILE R LSK+KSTY D LP I+ +T RVHT Y A TGR Sbjct: 598 AEEVLQELAL-DYPLPKLILEHRGLSKLKSTYTDKLPRMISDKTGRVHTSYHQAIAATGR 656 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S EPNLQNIPIKT+ G+ IR AFI+P K+++ADYSQIELRI+AH+++ L + FE Sbjct: 657 LSSTEPNLQNIPIKTEEGRSIRTAFIAPKGSKILAADYSQIELRIMAHLSQDEGLLKAFE 716 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 LD+H AAE+F V +++V+ RR+AK INF +IYG+S F LA Q+ R+ A DYI Sbjct: 717 EGLDVHSATAAEVFDVPLDEVTSNQRRNAKAINFGLIYGMSAFGLAKQIDTDRNTAQDYI 776 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ Y+E TK GYVET++GRR++ EI+S R ER AINAP+ Sbjct: 777 NTYFARYPGVETYMESTKEKAADLGYVETLYGRRLYLPEIHSKNGMRRKAAERTAINAPM 836 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAADI + AM+ V K L+D K KM++Q+HDELVFEV E+++ A + I M+ Sbjct: 837 QGSAADIIKLAMLEVDKWLKDVK-GIKMIMQVHDELVFEVEEDKLELAQKEIPKLMQSVA 895 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL ++ V +NW E Sbjct: 896 ----ELSVPLIADVGVGDNWDE 913 >gi|257481814|ref|ZP_05635855.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 921 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 351/990 (35%), Positives = 536/990 (54%), Gaps = 98/990 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P L+ GLP A+ G NML L R++ S FAV+FD Sbjct: 6 LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA + + Y LE + R K + E+ Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ I L+ L + + +L+ LEF I + D A Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E + ++ T E K A E ++ SQF + Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 W++KL +F ++ DA ++ + ++ +T Q Sbjct: 326 ---------------------WLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFAT--QTH 362 Query: 419 DTSF-KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL- 476 + ++ + ++ + +D+ +L LK E+ K+G + K+ +L Sbjct: 363 EAAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLA 413 Query: 477 -------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525 GI ++G D +L SYVLDS + HD S+ K+L++T +EI Sbjct: 414 NCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGA 473 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQME 584 + D+I+ Q ++A E +++ L+L + +L + L V ++ P++ V++ +E Sbjct: 474 KQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIE 533 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P +K Sbjct: 534 RQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSK 593 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 T TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Y Sbjct: 594 TATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 653 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A+ Sbjct: 654 QAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQD 713 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L F N LD+HR AAE+FGV +E V+ MRR AK INF +IYG+S F LA Q+ + Sbjct: 714 EGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVD 773 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R ++ Y+ RYF R+PG+ +Y+E+T+ + G+VETIFGRR++ +IN+ S+R E Sbjct: 774 RKQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAE 833 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R AINAP+QG+AADI ++AM++V+ LE+ L +++LQ+HDELV EV E+ + S+ I Sbjct: 834 RMAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQI 893 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A L VPL V + V NNW E Sbjct: 894 RPHMSGAA----ELAVPLLVEVGVGNNWDE 919 >gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21] gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21] Length = 928 Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust. Identities = 366/989 (37%), Positives = 545/989 (55%), Gaps = 86/989 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LFL+DG + IYRA +A R GL +AI GF N L ++L +KE+ SH AV+F Sbjct: 3 LFLLDGMALIYRAHFALSKSPRFTSTGLNTSAIMGFTNTLLEVL---KKEN-PSHMAVVF 58 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A T R+ + YKA+R +PE L +P + + F IP I + GFEADDII T Sbjct: 59 DTEAPTERHTSFEAYKAHREAMPEDLAAAIPYIFRLIEGFNIPVITMDGFEADDIIGTLA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP-EKMV 180 AE+ GF V ++ DKD QLVS +Y + E + ++ V++KW I E+++ Sbjct: 119 KKAEQAGFEVFCMTPDKDYAQLVSDHIKIYKPARMGNGHEILGVKEVLEKWEIERVEQVI 178 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + L GD++DNIPGIPG+G KTA L+Q++G++E I+ N+ ++K K +ENI YAE Sbjct: 179 DILGLWGDAVDNIPGIPGVGEKTAKKLIQDFGSVEGIIANSDQLK-GKLKENIETYAEQG 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +S+KL + DVP+ E L++ + N L LEF L RV Sbjct: 238 LISKKLATIILDVPVEFEAETLMIREANKDLLEPLFAELEFRTLGKRVFGE--------- 288 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + N +NK ++ ++D FSS T + P Sbjct: 289 ----EFNVVDNK-VSAGGQMDL--------FSSGESATPAPEATIPPA------------ 323 Query: 361 YPINN-----DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 P N+ SYT + + + + + + L + S F T DA + + ++ S Sbjct: 324 -PGNHIGNTEHSYTFVDSEEKLNELLALLASQKSFCFDTETTGTDANCCELVGLSFSV-- 380 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 +K + V S D + L ++ K FEN KIG N+K+D LV Sbjct: 381 EKGQAWY----------VPASADQKEAHALVQQ----FKPVFENPAIGKIGQNLKFDILV 426 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK----SRKSSIPI 530 L Y + + G D ML Y++D + H + +++ +L YT I K + + Sbjct: 427 LSWYDVKVAGELFDTMLAHYLIDP-ETRHGMDVLSENYLGYTPVSITTLIGPKGKGQLNM 485 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLI---VEKLLHVYERLDKPMIDVVSQMEITG 587 + V ++A E++++ LQL + P LI +KL H ++ P++ V+ ME G Sbjct: 486 RDVDPKTVSDYAAEDADITLQLKEIFEPMLIKVEADKLAH---EVEFPLVPVLVDMERVG 542 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTK 646 ++ID L S I + LE IY+ +G FN++SPKQLG++LF KL+ P KTK Sbjct: 543 VRIDVKALSDFSLAIQNEVQILEARIYEKAGVPFNIASPKQLGEVLFDKLQLDPKAKKTK 602 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 TGQ++T +D+ + I+++ILE+RQL K++STY D+LP IN +T RVHT Y+ A Sbjct: 603 TGQYQT-GEDVLMALANKSDIVQDILEYRQLQKLRSTYVDALPQLINTKTGRVHTSYNQA 661 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKIT 765 TGRL+S PNLQNIPI+T+ G+++R+AFI+ + +I SADYSQIELR++A I+K Sbjct: 662 VAATGRLSSNNPNLQNIPIRTERGREVRKAFIARDDEHVILSADYSQIELRLIAEISKDA 721 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 + F LDIH AA+++GV +E+V+ RR+AK +NF IIYG S F L+ L IPR Sbjct: 722 NMLDAFAKGLDIHTATAAKVYGVGLEEVTGNQRRNAKAVNFGIIYGQSAFGLSQSLGIPR 781 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EAAD I++YF ++PGI +Y+ T F +++GYVET+ RR + +INS +++R ER Sbjct: 782 REAADMIEQYFIQYPGIRDYMNNTIAFAKEHGYVETLLKRRRYLRDINSANATVRGFAER 841 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAPIQGSAAD+ + AMI +H+ ++ L KM +Q+HDELVF+VP E+ +II Sbjct: 842 NAINAPIQGSAADLIKIAMIHIHQDIQQANLKGKMTMQVHDELVFDVPRNEVAAFKEIIE 901 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ A + VP+ V I NW E Sbjct: 902 ARMKGA----LKTEVPIVVEIGEGQNWLE 926 >gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868] gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868] gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM] gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Riemerella anatipestifer RA-GD] Length = 935 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 357/984 (36%), Positives = 552/984 (56%), Gaps = 75/984 (7%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L+LVD + I+R +YA P L+ GL +AI GF N L +L++ R +H AV Sbjct: 9 LYLVDAYAMIFRGYYAFIRNPRLTT--GGLDTSAIYGFTNSLIELIKKER----PTHLAV 62 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD R+E + DYKANR + PE + +P + +A IP + ++G+EADD+I T Sbjct: 63 VFDVGRQNVRHEDFSDYKANRAETPEAIKIAVPYIHRILKAMHIPILGVEGYEADDVIGT 122 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178 AEK+G+ V +++ DKD QLV+ +Y + E + ++ V++K+ I P++ Sbjct: 123 IAGKAEKQGYEVFMVTPDKDFAQLVTEHIKIYKPGLKGGDVEILGVKEVLEKYEIENPKQ 182 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ + GDS+DNIPG+ G+G KTA ++EYG++EN+L N ++K K RE + AE Sbjct: 183 IIDYLGMMGDSVDNIPGLEGVGEKTAKKFIKEYGSMENLLANTHQLK-GKLREKVEASAE 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 +S+KL + D PI E LE N + + +EF +L + + Sbjct: 242 RGLMSKKLATILCDAPIEFHQEEYDLETPNFEEVKQIFEEIEFRRLYENLYKAF------ 295 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 +TEN A E + D+D+ Q SD + + T K +E + L Sbjct: 296 ---------STENS--AEEKKSDKDSVQSPVQLDLFSDFEAL--EQATTTKHTIEDREHL 342 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSA-SFKIITDTMDAFHSKPIAIAISTLDQK 417 QY ++T+ Q + + A F T ++D ++ I I+ S K Sbjct: 343 YQY----------IDTEKGQLLLLQNLLKQKAVCFDTETTSLDEMEAELIGISFSY---K 389 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 ++ ++ + + ++ + I+ + FFE E LKI HN+KYD VL Sbjct: 390 KGLAY-----YVPIPENRAE--------AQAIVERFRPFFEKESILKIAHNLKYDYKVLL 436 Query: 478 RYGISMRG-FEDIMLMSYVLD-SGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPID 531 YGI + G D M+ Y+L+ GR H + +++ +L+Y I K K + Sbjct: 437 NYGIEVTGNLFDTMIAHYLLNPDGR--HGMDYLSEMYLNYKPIALETLIGKKGKGQKTLR 494 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 +I ++A E++++ QL+ + P+L E++ V+ +++ P++ V+++ME+TG+ +D Sbjct: 495 EIDLPTQTQYAAEDADITFQLYEIFSPQLKKEEVEEVFYKIEMPLVKVLAKMELTGVALD 554 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQW 650 ++ LK S + ++L LE I++ +GE+FN++SPKQLGDILF KLK P KTKTGQ+ Sbjct: 555 EEWLKDESISLEQDLKILEGQIFEQAGEEFNINSPKQLGDILFEKLKLDPKAKKTKTGQY 614 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 +T++D+ Q + IIK ILE+RQL K+KSTY D+LPN I+ RVHT ++ T Sbjct: 615 -STSEDVLQKLSHKHEIIKLILEYRQLQKLKSTYVDALPNQISPIDGRVHTSFAQTVAAT 673 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRLAS PNLQNIPI+T+ GQ++R AF++P K++SADYSQIELR++A I+ + + Sbjct: 674 GRLASNNPNLQNIPIRTERGQQVRGAFVAPKGSKIVSADYSQIELRLIAEISGEETMIKA 733 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+ DIH A+++F V + +VS R AKT+NF IIYG S F LA Q + R++A Sbjct: 734 FKEGQDIHASTASKLFDVPLNEVSKTQRSQAKTVNFGIIYGQSAFALADQTGLSRTDAKQ 793 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 I Y+ +P + ++ + R+ GYVETI GR+ H +INS +R ER A+NA Sbjct: 794 LIDSYYETYPKLKAFMTEQVQVARKKGYVETIMGRKRHLKDINSNNFVVRGHAERNAVNA 853 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI + AMI + ++ L TKMLLQ+HDELVFEVP EEI A+ +I ME Sbjct: 854 PIQGSAADIIKLAMIKIDSEIKAQGLKTKMLLQVHDELVFEVPNEEIEVATTLIKQEMET 913 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A + +VPL + V +NW E Sbjct: 914 AY----STKVPLLTEVGVGDNWLE 933 >gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] Length = 929 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 359/984 (36%), Positives = 538/984 (54%), Gaps = 78/984 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A LS DG P A+ G NML +L R + + + AV+FD Sbjct: 6 LLLVDGSSYLYRAYHAMAQLSAP-DGAPTGALYGVLNMLRRL----RADYVHDYCAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122 FR+E++PDYKA RP +P+ L PQ LP LVRL G P + I EADD+I Sbjct: 61 AKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVEADDVIG 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T +A + G+ V + + DKD+ QLV+ L +T+ E +DIE V +K+G+ P+++ Sbjct: 117 TLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDY 176 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD +DN+PG+ G KTA L+ YG+L ++ +A+ IK K EN+ L Sbjct: 177 LALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVVEHAAEIK-GKVGENLQAALPQLPL 235 Query: 243 SRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVATTYDCDA 296 S LV ++TDV + H L D P+ A++F + R T+ +A Sbjct: 236 SYDLVTIKTDVDL-----HTELSDGLESLRRTSPKWSQL--AVDFKRWGFR---TWLKEA 285 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 + D + + I + +D +T+ I P+KL Sbjct: 286 ESRMHEAADGDLFGSDTIGEQAALDMETS-----------SEKIIEHAPAPEKL------ 328 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 Y + + KL T ++DA ++ + I+I+ Sbjct: 329 ----------DYQAVTTEAQFAALLDKLAQADKIGIDTETTSLDAMNAALVGISIAFQAG 378 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 K ++I V S + + + +L YLK EN KIG N+KYD+ V Sbjct: 379 K--------AVYI--PVGHSLTAAPEQLDLQYVLGYLKPHLENPALKKIGQNLKYDQHVF 428 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 429 ANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGFAD 487 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G+QID+ Sbjct: 488 VAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDR 546 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQW 650 L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 AELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGI 606 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A +T Sbjct: 607 STNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAIT 665 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 666 GRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 725 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+N D+HR AAE+FG+ E VSP+ RR+AKTINF +IYG+ + LA L I A Sbjct: 726 FQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKT 785 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I RYF R+PG+ EY+++TK G+VET+FGRR++ +I + ++ R ERAAINA Sbjct: 786 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINA 845 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+A+D+ +RAMI V + L L +K+++Q+HDELV EVPE E+ + + + M K Sbjct: 846 PMQGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVPEAELDSVKEKLPQIMAK 905 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 + L+VPL + V NW+E Sbjct: 906 --VDDGMLKVPLVAEVGVGMNWEE 927 >gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] Length = 911 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 367/977 (37%), Positives = 546/977 (55%), Gaps = 79/977 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS+++RA+++ P L+ G AI G NML L+ K+ SH V Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSK-GEATGAIYGVVNMLKSLI----KQYDPSHMVV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFRN++Y +YKANRP +P+ L Q+ + +A G P I I+G EADD+I T Sbjct: 61 VFDAKGKTFRNDMYSEYKANRPPMPDDLRTQIAPLHSIIKAMGFPLISIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + IA ++ V + + DKD+ QLV+ L +T+ + D E V++K+G+ PE ++ Sbjct: 121 FARIASEQQRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPETVVEKFGVGPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD +DNIPG+ G G KTA LQ+YG+L+ ++ NAS IK K E + + + LS Sbjct: 181 ALMGDKVDNIPGVEGCGPKTAVKWLQKYGSLQGVIDNASDIK-GKIGEKLAKAIDHLPLS 239 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK-LINRVATTYDCDAANIEPV 302 +L ++ DV + L+ L+ N LI+ EF + L + D D Sbjct: 240 YELATIKCDVEVESDLDTFKLQTPNKDELIALYGECEFRRWLAELLDNPKDADTH----- 294 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 L + T EN+ +E + +T + +QF +L +E+L + + Sbjct: 295 -LAVPTQENELPKVE-DAHYETILTEAQFETL-----------------IEQLNEAELFA 335 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + ++ T + K + G A++ I + P +++ + Q Sbjct: 336 FDTET-TSLEYMKAQLVGMSFAVKAGEAAYLPIAHD---YPGAPEQLSLEFVMQ------ 385 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--- 479 K+ I D ++ G+N L Y K N + G IK+D + L Y Sbjct: 386 KLGPILAD----ENKAKVGQN------LKYDKSVLANAGYELNG--IKFDTM-LESYVFN 432 Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539 + R D + + Y+ S DIA +K L++ + E+ K+ Sbjct: 433 SVGTRHDMDSLALKYLGHKNISFEDIAGKGKKQLTFNQIELEKAAP-------------- 478 Query: 540 EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +A E++++ L+L +L PKL EKL V+E ++ P++ V+S +E TG+ ID ++L Sbjct: 479 -YAAEDADITLRLHQVLWPKLEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLATH 537 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S + + LL LE+ ++++GE FNLSSPKQL +LF KL+ P KT G +TA+++ Sbjct: 538 SQRLGERLLELEKEAFEIAGEPFNLSSPKQLQVLLFEKLELPVIKKTPKGA-PSTAEEVL 596 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 Q D P+ K I+E R LSK+KSTY D LP +N+RTQRVHT Y A T TGRL+S +P Sbjct: 597 QELAHDYPLPKVIIEHRGLSKLKSTYTDKLPLIVNERTQRVHTSYHQAVTATGRLSSSDP 656 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+++ G++IR AFI+ K+++ADYSQIELRI+AH+++ L F N LD+H Sbjct: 657 NLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLSAFANGLDVH 716 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 AAE+FGV +E+V+ MRR AK +NF +IYG+S F LA QL +PR EA YI +YF R Sbjct: 717 SATAAEVFGVELEEVTSDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFER 776 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 FPG+ EY+E T+ +NGYVETIFGRR+H EIN+ + R ERAAINAP+QG+AAD Sbjct: 777 FPGVLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAAD 836 Query: 899 ITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 I ++AM+SVH + T K+L+Q+HDELVFE+ E ++ I M +A Sbjct: 837 IIKKAMLSVHAWVNQQAPNTVKLLMQVHDELVFEIKTECTEQYTKQICELMSQAA----Q 892 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPL V +NW++ Sbjct: 893 LDVPLIVEADEGDNWEQ 909 >gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] Length = 954 Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust. Identities = 367/1003 (36%), Positives = 548/1003 (54%), Gaps = 88/1003 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ K G P A+ G NML L+ SH AV Sbjct: 6 KNLLVLVDGSSYLYRAFHAFPPLTNKQ-GEPTGAMYGVLNMLKSLIAQVE----PSHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + I+G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEQYKSHRPPMPDELRSQIQPLHAIIKALGIPLLSIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV+ L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LAVQASQAGKHVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE------NILEYA 237 AL GDS DNIPG+ G+G KTA LLQ G+++ I N ++ + R + Sbjct: 181 ALLGDSSDNIPGVKGVGEKTAIALLQGIGSMQAIYANLDKVAELSFRGAKTFAPKLEAEK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 ETA LS L ++TDV + + + L+ + +L+ EF + +N V + A Sbjct: 241 ETADLSYLLATIKTDVALDVTYDQLVTQPQQRDQLVELFGRYEFKRWLNEV-----MNDA 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N PV T + + T ++SEQ K Sbjct: 296 N--PV---------------------TQTSAEKIPNNYQATQAVSSEQKSAPFV-----K 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +S I+ +Y + + + +W+ KL+ + TD +DA + + I+ + Sbjct: 328 IS---IDRTAYDCVNSPELFTKWLAKLQMAELVAVDTETDNLDAMQANLVGISFGLENG- 383 Query: 418 DDTSFKVETIFIDLSVH------TSQDSTGK-------------NTLTK-EILSYLKKFF 457 E +I L+ T D G+ N L K + L LK Sbjct: 384 -------EACYIPLAHKGKITQPTQVDLFGESEAELDEVEALLPNQLNKADCLVQLKPIL 436 Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSY 515 EN + KIG NIKYD + R GI ++G D ML SY LDS GR H++ ++A+++L + Sbjct: 437 ENPNIRKIGQNIKYDLTIFARNGIELQGVAFDTMLQSYTLDSTGR--HNMDNLAERYLGH 494 Query: 516 TR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYER 571 +E+ K + D+I + E+A E++ + ++L LL +L +L+ ++E+ Sbjct: 495 QTIPFEELAGKGKHQLTFDQIELDKATEYAGEDAEITMKLHQLLWSELQKTPELVKLFEQ 554 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P++ V+S++E G+ ID L S EI + L LE ++ +GE FNL+S KQL + Sbjct: 555 IEMPLVSVLSRVERNGVLIDPAKLLAHSVEIEQRLKELETLVHQEAGEVFNLASTKQLQE 614 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF KL P KT G T + LE++ + + ++E R LSK+KSTY D LP Sbjct: 615 ILFNKLGLPILKKTPKGAPSTNEEVLEELAQMGHQVPVLLMEHRGLSKLKSTYTDKLPQM 674 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 IN +T RVHT Y A T TGRL+S +PNLQNIPI+ + G++IR+AFI+ +++ADYS Sbjct: 675 INAQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEQGRRIRQAFIARDGYVILAADYS 734 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELRI+AH+A + + F DIHR AAEIFGV +E V+ + RR AK INF +IYG Sbjct: 735 QIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIYG 794 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 +S F LA QL I R++A Y++ YF R+P + +++ + + GYVET+FGRR++ E Sbjct: 795 MSEFGLANQLGISRTDAKKYMELYFQRYPAVQQFMLDIREKAAEKGYVETLFGRRLYLPE 854 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 INS R ER AINAP+QG+AADI + AMI + +++ + + M++Q+HDELVFE Sbjct: 855 INSSNQMRRKAAERVAINAPMQGTAADIIKVAMIGIDQAVRNCE-DIAMIMQVHDELVFE 913 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 V + + +Q+I MEKA I L+VPL + V +NW E Sbjct: 914 VKADRVEHYTQLIKAEMEKA----IELKVPLIAEVGVGSNWDE 952 >gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] Length = 887 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 346/941 (36%), Positives = 518/941 (55%), Gaps = 70/941 (7%) Query: 48 LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107 +L+ ++ + AVIFD TFR+++Y YKA+RP +P+ L Q+ + +A G+ Sbjct: 1 MLRAMMRQFASERMAVIFDAKGKTFRDDMYDQYKAHRPPMPDDLRCQIEPLHQIIRAMGL 60 Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167 P I I+G EADD+I T A + G V I + DKD+ QLV+ L +T+ +D E Sbjct: 61 PLISIEGVEADDVIGTLAAQASQAGMPVLISTGDKDMAQLVNDHVTLINTMTNVVMDREG 120 Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ- 226 VI+K+GIPPE ++ AL GD +DNIPG+PG+G KTA LLQ G LE + N +I + Sbjct: 121 VIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGDKTATALLQGIGGLEALYANLDKIAEL 180 Query: 227 -----KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLI--LEDCNGPRLISFLKAL 279 K + + E + A LS +L ++ DV + + L+ DC+ LI+ + Sbjct: 181 GFRGSKTMAKKLEENRDNAWLSYQLATIKLDVELDHTPQSLLKTTPDCDA--LIALYGKM 238 Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339 F + + + EP+ +Q S Q Sbjct: 239 AFKSWLTELLDGGNGVVEAREPI--------------------------TQREVASGQAH 272 Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399 + SE S I+ Y I++ + W+ KL+ +F TD++ Sbjct: 273 TVMSEH-------------SAVTIDRSQYQTILDEQSFAIWLAKLKQAEVFAFDTETDSL 319 Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459 D + + ++ + + + + V ++D +D +L+ LK EN Sbjct: 320 DYMVANLVGLSFA-VAEGEAAYVPVGHDYLDAPQQLDRDW---------VLAQLKPLLEN 369 Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR- 517 K+G N+KYD V+ RYGI+MRG D ML SYV +S D+ S+A ++L ++ Sbjct: 370 PQLAKVGQNLKYDASVVARYGITMRGIAHDTMLASYVYNSVGGKQDMDSLALRFLQHSCI 429 Query: 518 --KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDK 574 +++ K+ + ++I Q +A E+++V L+L L+ L + L VY ++ Sbjct: 430 SFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHHRLQALLEADAPLFGVYRDIEV 489 Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P++ V+S+ME TG+ ID LL S EI++ L+ LE Y+L+ ++FNLSSPKQL ILF Sbjct: 490 PLVPVLSRMERTGVLIDDQLLAIQSQEIAQRLVELERKAYELADQEFNLSSPKQLQTILF 549 Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 ++K P KT +G T + L+++ D P+ ILE+R L+K+KSTY D LP IN Sbjct: 550 EQMKLPVVKKTPSGTPSTNEEVLQELAL-DYPLPAVILEYRGLAKLKSTYTDKLPKMINP 608 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754 T RVHT Y A T TGRL+S +PNLQNIPI+ G++IR+AFI+P K+++ DYSQIE Sbjct: 609 TTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNQEGRRIRQAFIAPSGWKIMAVDYSQIE 668 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LRI+AH++ L F+ DIH AAEI GV+I++V+ + RR AK +NF +IYG+S Sbjct: 669 LRIMAHLSGDPALLDAFQQGKDIHTATAAEIIGVSIDQVTSEQRRRAKAVNFGLIYGMSA 728 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 F LA QL IPRSEA Y+ +YF R+PG+ Y+E+T++ + GYVET+FGRR+H EI S Sbjct: 729 FGLAKQLGIPRSEAQHYMDKYFERYPGVLRYMEETRSMAAEQGYVETLFGRRLHLPEIQS 788 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVP 933 R ERAAINAP+QG+AADI ++AM+ V +E + + K+L+Q+HDELVFEV Sbjct: 789 RNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDNWIETEGQGRVKLLMQVHDELVFEVQ 848 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E ++ + ME A L VPL + NNW E Sbjct: 849 ESALSEIESKVQELMESAA----QLNVPLVADAGHGNNWDE 885 >gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem] gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem] Length = 892 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 344/976 (35%), Positives = 536/976 (54%), Gaps = 101/976 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+DGSS+IYRA++A LS G P NA+ GF ML K++ K+ +H AVIFD Sbjct: 8 LYLLDGSSYIYRAYFAIRHLSSP-SGFPTNALYGFTQMLLKVM----KDRAPAHVAVIFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +TFRNE++P YKA R +PE L Q+ ++ +AF IPA+E+ GFEADDII T Sbjct: 63 AGKITFRNELFPAYKATRSAMPEDLAQQIEPIKQMVRAFNIPALELPGFEADDIIGTIAK 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 E +G A +++ DKDLMQ+VS L DT+KE+ I V +K+G+ PE++V + AL Sbjct: 123 KCEAQGMACVVVTGDKDLMQIVSDRVTLLDTMKEKSFGIADVYEKFGVAPERVVDVLALW 182 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPG+PGIG TA LLQE+G+L+ +L A +K K Sbjct: 183 GDASDNIPGVPGIGEVTAKKLLQEFGSLDELLARAGEVKGK------------------- 223 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 NG RL+ F R T DC+ Sbjct: 224 ---------------------NGERLVEFADQARLC----RTLATIDCN----------- 247 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP-INN 365 + IE +D D + L+ + F+ L+ L+ P ++ Sbjct: 248 -------VPIEYSVD-DFAVTPPDNRRLAALFREYG--------FVTLLKDLTSSPTLSC 291 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 D Y+ ++ +++++ V +LE + + + T +++ ++ + A+S E Sbjct: 292 DRYSLVLTEEELRRVVAELEAAPAFAIDLETTSLNPREARVVGYAVSCRPH--------E 343 Query: 426 TIFIDLS-VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 +I + + L EIL L K + KIG N+KYD VL G M Sbjct: 344 ARYIPVGHRYLGAPEQLPEALVLEILGPLLK---DPARRKIGQNLKYDYQVLRMAGFEME 400 Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540 G + D ML +Y+++ R+S + ++A ++L + + E+ S K + ++ + Sbjct: 401 GIWCDTMLAAYLVNPARNSQGLDALALEYLDHRMISYAEVAGSGKCELNFSEVDLDRAGP 460 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 ++ E+++ L +L PK+ + + + L+ P++ +++ ME+ G+++D DL+K++SA Sbjct: 461 YSCEDADATYLLHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSA 520 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK--TGQWKTTAQDLE 658 K L+ LE I++ G FN++SPKQLG++LF ++ G KTK TG W T ++LE Sbjct: 521 GFGKQLIELEAQIHEHCGGPFNINSPKQLGEMLFERMGLAVGKKTKGKTG-WSTNVEELE 579 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ ++ + + +L++R +SK+KSTY D+LP ++ T RVHT Y+ A T TGRL+S +P Sbjct: 580 RL-AEEHEVARLLLQYRSISKLKSTYTDALPKLVDPATGRVHTSYNQAVTSTGRLSSSDP 638 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+ + G+ IRRAFI+ P ++SADYSQIELR+LAH++ L + F DIH Sbjct: 639 NLQNIPIRGEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLSGDRVLCEAFAAGEDIH 698 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R A+E+FG+ E V+ +MRR AK INF +IYG F LA +L + +A +I YF R Sbjct: 699 RRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGAFSLAKELGVTPKQAKAFIDSYFER 758 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 G +++ G+V TI GRR+ EI S ++R +R A+N PIQGSAAD Sbjct: 759 HSGARSFLDSCIREAEVCGFVTTIMGRRLCIPEIASKNGNVRAFAQRNAVNYPIQGSAAD 818 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I + AM+ V + ++ ++A+++++Q+HDELVFEVPE E +++ ME A LP L Sbjct: 819 IIKAAMLRVIRRMQQERVASRLIMQVHDELVFEVPEAERDLMEELVRTEMEGA-LP---L 874 Query: 959 RVPLKVNIKVSNNWQE 974 VPLKV++ NW E Sbjct: 875 SVPLKVDLNFGLNWSE 890 >gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus] Length = 923 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 350/974 (35%), Positives = 544/974 (55%), Gaps = 62/974 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS F++RA++A P L+ GL NAI G + + KL++ + +H AVIFD Sbjct: 4 FVLVDGSYFLFRAYHALPPLTTS-TGLHTNAIRGAISAIQKLMRRMQP----THMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+++ P YK +RP +PE L Q+P + +A GIP + G EADDII T Sbjct: 59 TPEPTFRHKLSPIYKGDRPSMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A EG V I + DKD+ QLV+ L D+ K+ +D + V +K+G+ P +++ L Sbjct: 119 RAVLEGHHVLISTGDKDMAQLVNDHVKLEDSFKDRVMDTDGVFEKFGVWPNQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G KTAA LL EYG L+NI+ NA ++K K +NI + + +L +L Sbjct: 179 GDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANADQLK-GKISQNIKDNLDNIKLDHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + D+P+ + L L D N L + LEF + + + ++++ + Sbjct: 238 ASIVCDLPLELDWHELKLIDPNVDALRNLYTELEFRNQLQSLEHPNNPNSSSYK------ 291 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + ++ ++ +I+T +SL+ Q ++ + L E +L Q N D Sbjct: 292 --QQASQTVVQNDVKPTESIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLLQRMQNAD 349 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 + + T + + ++ F I D DA++ P+A Sbjct: 350 HFAIDIETTSLDYRIAEM-----VGFSIAFDAQDAYYV-PLA------------------ 385 Query: 427 IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 H +++ + L +E IL+ +K ENE KIGH++KYD + +GI ++G Sbjct: 386 -------HNYENAPQQ--LNREQILAQIKPVLENEAVKKIGHHLKYDAHIFANHGIELKG 436 Query: 486 -FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541 + D ML SYVL++ + H + +A+ +LS+ T ++I ++I + Sbjct: 437 WYFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHY 496 Query: 542 AIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 A E+++V +L+ +L KL +L ++ ++ P+ ++S ME GI++D L +S Sbjct: 497 AAEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSV 556 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 E +K LE +++ E FN++SPKQ+G+ILF KL G KT TGQ+ T+ LE+I Sbjct: 557 EFAKTREGLENQAMEIADETFNIASPKQVGEILFDKLGIKGGKKTATGQYSTSESVLEKI 616 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 ++P+ + ILE R L+K+KSTY D L + T RVHT Y A T TGRL+S +PNL Sbjct: 617 ---EHPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNL 673 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIPI+ +G++IR+AFI+P + L++ADYSQIELR++AH ++ L F++ D+HR Sbjct: 674 QNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRR 733 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 AAE+ G+ IE V+ RR AK +NF ++YG+S F L QL R E+ +YIK+YF R+P Sbjct: 734 TAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNYIKQYFQRYP 793 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 GI+EY+++T+ + G+VETI GRR++ +I++ +R ERAAINAP+QGSAADI Sbjct: 794 GIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPLQGSAADII 853 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 + AMI V K L K K+LLQ+HDELVFE + S+ I ME + + V Sbjct: 854 KLAMIEVDKVLP--KDQAKLLLQVHDELVFEADQNIAEELSKQIAKVMESV----VEISV 907 Query: 961 PLKVNIKVSNNWQE 974 PL V + NW + Sbjct: 908 PLVVEVGQGLNWDD 921 >gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114] gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114] Length = 935 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 361/997 (36%), Positives = 546/997 (54%), Gaps = 87/997 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDGSS++YRA++A L+ DG P A+ G NML +L R + + + Sbjct: 1 MSNKPTLLLVDGSSYLYRAYHAMAQLTAP-DGAPTGALYGVLNMLRRL----RADYVHDY 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR+E++PDYKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 56 CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVE 111 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T +A + G+ V + + DKD+ QLV+ L +T+ EK+DIE V +K+G+ P Sbjct: 112 ADDVIGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGEKLDIEGVKEKFGVRP 171 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L ++ +A+ +K K EN+ Sbjct: 172 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEVK-GKVGENLQAA 230 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVAT 290 LS LV ++TDV + H L D P+ A++F + R Sbjct: 231 LPQLPLSYDLVTIKTDVDL-----HTELSDGLESLRRTSPKWSQL--AVDFKRWGFR--- 280 Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350 T+ +A + D + + I + +D +T+ SE+ P+K Sbjct: 281 TWLKEAESRMHEAADGDLFGSDTIGEQAALDMETS-----------------SERLPEKA 323 Query: 351 FL-ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409 E+L Y + + KL T ++DA ++ + I Sbjct: 324 VAPEKL-----------DYQAVTTEAQFAALLDKLSQADKIGIDTETTSLDAMNAALVGI 372 Query: 410 AISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468 +I+ F+ E ++I V S + + +++L LK EN KIG N Sbjct: 373 SIA---------FQAGEAVYI--PVGHSLTAAPEQIDLQDVLGRLKPHLENSALKKIGQN 421 Query: 469 IKYDKLVLHRYGISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519 +KYD+ V YGI++ G D ML SY+++S H + ++++WL T + Sbjct: 422 LKYDQHVFANYGIALNGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYES 480 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 + I ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V Sbjct: 481 LCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQV 539 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 + +ME G+QID+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ Sbjct: 540 LFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGI 599 Query: 640 PSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 P+ KT G T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + Sbjct: 600 PTKGLKKTAKGGISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDG 658 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 RVHT Y+ A +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI Sbjct: 659 RVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRI 718 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 +AH++ L F+N D+HR AAE+FG+ E VS + RR+AKTINF +IYG+ + L Sbjct: 719 MAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGL 778 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 A L I A ++I RYF R+PG+ EY+++TK G+VET+FGRR++ +I++ + Sbjct: 779 AKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNA 838 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 + R ERAAINAP+QG+A+D+ +RAMI V L+ L TK+++Q+HDELV EVPE E+ Sbjct: 839 NARAGAERAAINAPMQGTASDLIKRAMIDVSCWLDSDGLKTKLIMQVHDELVLEVPEAEL 898 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M K +N VPL + V NW+E Sbjct: 899 DLVKEKLPQIMAKVDEGMLN--VPLVAEVGVGMNWEE 933 >gi|331009449|gb|EGH89505.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 921 Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust. Identities = 351/990 (35%), Positives = 536/990 (54%), Gaps = 98/990 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P L+ GLP A+ G NML L R++ S FAV+FD Sbjct: 6 LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA + + Y LE + R K + E+ Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ I L+ L + + +L+ LEF I + D A Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E + ++ T E K A E ++ SQF + Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 W++KL +F ++ DA ++ + ++ +T Q Sbjct: 326 ---------------------WLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFAT--QTH 362 Query: 419 DTSF-KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL- 476 + ++ + ++ + +D+ +L LK E+ K+G + K+ +L Sbjct: 363 EAAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLA 413 Query: 477 -------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525 GI ++G D +L SYVLDS + HD S+ K+L++T +EI Sbjct: 414 NCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGA 473 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQME 584 + D+I+ Q ++A E +++ L+L + +L + L V ++ P++ V++ +E Sbjct: 474 KQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIE 533 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P +K Sbjct: 534 RQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSK 593 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 T TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Y Sbjct: 594 TATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 653 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A+ Sbjct: 654 QAVGVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQD 713 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L F N LD+HR AAE+FGV +E V+ MRR AK INF +IYG+S F LA Q+ + Sbjct: 714 EGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVD 773 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R ++ Y+ RYF R+PG+ +Y+E+T+ + G+VETIFGRR++ +IN+ S+R E Sbjct: 774 RKQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAE 833 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R AINAP+QG+AADI ++AM++V+ LE+ L +++LQ+HDELV EV E+ + S+ I Sbjct: 834 RMAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQI 893 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A L VPL V + V NNW E Sbjct: 894 RPHMSGAA----ELAVPLLVEVGVGNNWDE 919 >gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1] Length = 927 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 362/983 (36%), Positives = 534/983 (54%), Gaps = 84/983 (8%) Query: 7 LFLVDGSSFIYRAFYATPLL---SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L LVDGSS++YRA++A P L P AI G NML LL KE H AV Sbjct: 16 LVLVDGSSYLYRAYHAMPDLRAVPSDPQSAPTGAIRGMINMLQALL----KEYPTEHMAV 71 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR +YP YKA+R +P+ L Q+ + + G+P + + EADD+I T Sbjct: 72 VFDAAGATFREALYPQYKAHRAPMPDDLRVQIEPIDEVIRLLGLPVLRVPDVEADDVIGT 131 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +G+ V I S DKDL QLV + DT+ + DI V ++G+PP MV Q Sbjct: 132 LAKTAAAQGWRVVISSGDKDLSQLVDERITIIDTMSGKVRDIAGVQAEFGVPPALMVDYQ 191 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 L GD++DN+PG+ +G KTAA LQ YG+L+ I+ +A IK EN+ + L+ Sbjct: 192 TLVGDAVDNVPGVDKVGPKTAAKWLQAYGSLQAIVEHAHEIKGVAG-ENLRRALDWLPLA 250 Query: 244 RKLVMLRTD------VPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 R+L+ +RTD VP L+ L + P L F + F L+ Sbjct: 251 RQLLTIRTDCDLDGHVPGLPALDALRRRAPDVPALRDFYQRYGFRGLLR----------- 299 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 LD ++E T + Q L+D + Sbjct: 300 -----ALDDGSSETA-----------PTAASGQGELLADAPA------------------ 325 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Q P+ Y + + + W+Q+L + + T ++D ++ + I+ S Sbjct: 326 --QPPLR---YETVRDWHTLDGWLQRLRSAPLVALDTETTSLDEMAARLVGISFSVAPG- 379 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E ++ L+ H + G+ L E+L+ L+ + E+ K G +IKYD+ VL Sbjct: 380 -------EAAYLPLA-HEDPGTAGQLPL-DEVLARLRPWLEDPAAAKCGQHIKYDQHVLA 430 Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSS-IPIDKI 533 +GI ++G+ D ML SYVL+ R H++ S+A++ L S R E L + ++ IP ++ Sbjct: 431 NHGILVQGYVHDTMLQSYVLEVHRP-HNLESLAERHLGRSAMRYEDLCGKGAAQIPFARV 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 + +A E++ L + +L P+L + L L+ + V+ +ME G+ ID Sbjct: 490 PIERAAPYACEDAEQCLAVHQVLWPQLQAQPALQRIYELEVAVSGVLWRMERHGVLIDAA 549 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L++ S + + + +LE + L+G FNL SPKQ+ ++ + +LK P KT TG T Sbjct: 550 ELQRQSQALGERIRALEAEAHALAGMPFNLGSPKQIAEVFYDRLKLPVLKKTATGAPSTD 609 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + LE++ D P+ +LE R L K+KSTY D LP IN T RVHT ++ A +TGRL Sbjct: 610 EEVLEKL-AEDYPLPARVLEHRSLVKLKSTYTDKLPTMINPATGRVHTHFAQAVAVTGRL 668 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 AS EPNLQNIPI+T G++IR AFI+PP + SADYSQIELRI+AH+++ L + FE Sbjct: 669 ASAEPNLQNIPIRTPEGRRIRAAFIAPPGHVIASADYSQIELRIMAHLSQDPALLRAFEQ 728 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 LD+HR AAE+FGV+ E V+P+ RR+AKTINF +IYG+SP+ LA L I S A YI+ Sbjct: 729 GLDVHRATAAEVFGVSPEHVTPEQRRYAKTINFGLIYGMSPYGLAKALGIDASAAKSYIE 788 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 RYF RF G+ Y+E+T+ R GYVET+FGRR+ EI SP R ERAAINAP+Q Sbjct: 789 RYFERFAGVRAYMEQTRAQARARGYVETVFGRRLVLPEIQSPNGPRRAAAERAAINAPMQ 848 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AAD+ + +M++V ++L++ + T+M+LQ+HDELVFEVP EE+ + M Sbjct: 849 GTAADLIKMSMVAVQRALDEQQRRTRMVLQVHDELVFEVPNEEVDWVRTEVPRLMAAVA- 907 Query: 954 PKINLRVPLKVNIKVSNNWQEEN 976 LRVPL ++ V NW++ + Sbjct: 908 ---TLRVPLVASVGVGANWEQAH 927 >gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 963 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 364/988 (36%), Positives = 554/988 (56%), Gaps = 86/988 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKL-LQNSRKESIASHFAVIF 65 L LVDGSS++YRAF+A P LS G P AI G NML +L LQ S + + A++F Sbjct: 40 LLLVDGSSYLYRAFHAFPPLSNS-KGEPTGAIYGVLNMLRRLFLQYSPQ-----NMAIVF 93 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D P TFR+ ++ +YKA+RP +P+ L Q+ + A G+P + ++G EADD+I T Sbjct: 94 DAPGETFRSALFSEYKAHRPSMPDDLRAQIAPLHHILSAMGLPLLVVEGVEADDVIGTLA 153 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 AEK G+ V I + DKD+ QLVSP L +T+ ++ +D + V +K+G+PP+ +V L AL Sbjct: 154 KDAEKAGYEVVISTGDKDMAQLVSPHITLINTMNDKTLDPDGVCEKFGVPPDLIVDLLAL 213 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEYAET 239 GDS DNIPG+PGIG KTA LLQ G L+ + + +I R E ++++ E Sbjct: 214 MGDSADNIPGVPGIGEKTAQALLQGMGGLDKLFDHLDKIADLSFRGARTLAEKLIKHQEQ 273 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LSR+L ++TDV + I + L + C P I LK L Sbjct: 274 AYLSRQLATIKTDVSLDIRCDEL--QVC--PPQIDELKKL-------------------- 309 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 + E K + E + + +S S + + I+S P K Sbjct: 310 ------FSHYEFKTYLADVEAGK---WPATHLNSKSSKNNPISSSTDPLKAIF------- 353 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 + D Y I+N + W+++L+ + TD +D + I I+ + K Sbjct: 354 ----STDDYETILNEERWFVWLERLKKASLFAIDTETDGLDTKTAHLIGISFAVAPGK-- 407 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 ++ L H ++ + K +L+ K E+ LK+G N+K+D+ +L Y Sbjct: 408 ------AAYLPLG-HDYPEAPAQLNRDK-VLALFKPLLEDPQALKVGQNLKFDQSLLANY 459 Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD 535 GI ++G D ML SYV +S HD+ S++++ L++ + ++I K+ + ++I Sbjct: 460 GIKLQGIAFDTMLESYVFNSVAGRHDMDSLSERHLNHKTLSFEDIAGKGKNQLTFNQIPL 519 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 Q +A E+++V L+L L L PKL L+ V + ++ P++ V+S+ME TG+ ID D+ Sbjct: 520 EQAAIYAAEDADVTLRLHLALWPKLKENPDLMKVLQEIEMPLLSVLSRMERTGVMIDPDI 579 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L S E+ L LE+ +D++GE FNL+S +QL IL+ K P KT G T Sbjct: 580 LLNHSKELQLRLTELEKKAHDIAGETFNLNSTQQLQTILYEKQTLPVLKKTPKGAPSTNE 639 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L ++ D P+ K ILE R L+K+K+TY D LP I+ + RVHT Y A T TGRL+ Sbjct: 640 AVLAELAL-DYPLPKIILEHRSLTKLKTTYTDKLPLMIHPLSGRVHTSYHQAVTSTGRLS 698 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIP++ + G++IR AFI+P ++++ADYSQIELRI+AH+++ L F Sbjct: 699 SRDPNLQNIPVRNEEGRRIRHAFIAPRGYQIVAADYSQIELRIMAHLSQDQGLLNAFSEG 758 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH + AAE+FG+ + +VS Q RR AK INF +IYG+S F LA QL + R EA Y+ Sbjct: 759 QDIHLITAAEVFGLPVSQVSAQQRRSAKAINFGLIYGMSAFGLARQLNVSRFEAERYMNL 818 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF +P + +Y+++T+ +NGYV T+ GRR++ +I+S ++ R ER AINAP+QG Sbjct: 819 YFTHYPKVLDYMQRTREEAVKNGYVTTLEGRRLYLADIHSKNANRRKAAEREAINAPMQG 878 Query: 895 SAADITRRAMISVHKSL--EDHKLATK------MLLQIHDELVFEVPEEEITTASQIIVH 946 +AADI +RAMI + L E+ KLA K +++Q+HDELVFEV + + +A+ I Sbjct: 879 TAADIIKRAMIHIDFWLQQEEQKLAPKQKSRVNLIMQVHDELVFEVHDSVLKSATDKIRE 938 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 MEK+ + LKV+I NNW++ Sbjct: 939 LMEKST-----QNLLLKVDIGFGNNWEQ 961 >gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] Length = 952 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 371/996 (37%), Positives = 548/996 (55%), Gaps = 76/996 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ + G P A+ G NML L+ SH AV Sbjct: 6 KNPLVLVDGSSYLYRAFHAFPPLTNRL-GEPTGAMYGVLNMLKSLISQVN----PSHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFR E++ YK++RP +P+ L PQ+ PL R+ +A GIP I I+G EADD+I Sbjct: 61 VFDTKGKTFRYELFKQYKSHRPPMPDDLRPQIEPLHRI-IKALGIPLISIEGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A K+G V I + DKD+ QLV+ L +T+ +D E VI+K+GIPPE ++ Sbjct: 120 TLAVQAAKDGKDVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDF 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR--ENILEYAET- 239 AL GDS DNIPG+ G+G KTA LLQ G+LE I N +I R +N E Sbjct: 180 LALMGDSADNIPGVKGVGEKTALALLQGIGSLEQIYANLDQIATLSFRGAKNFAPKLEAE 239 Query: 240 ---ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A LS L ++TDV + + + L+ + + L + EF + +N V Sbjct: 240 KANADLSYLLATIKTDVELDVTHDQLLTQPQDRAELAQLFEHYEFKRWLNEVNQ------ 293 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 N PV T + + T + +E+ + Sbjct: 294 -NANPV---------------------TQTSAEKVPNNYQVTQAVRNEENVANVV----- 326 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS---- 412 I+ Y + + + W++KL + TD++DA + + I+ + Sbjct: 327 -----EIDRSKYETVDTEQKLSAWIEKLTAARLIAVDTETDSLDAMSANLVGISFALENG 381 Query: 413 -----TLDQKDDTSFKVETIFID--LSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLK 464 L K + +F D S S D KN L LS LK N K Sbjct: 382 EACYIPLGHKQKAQPQQADMFGDEERSESPSSDELVKNQLNLTACLSKLKPILLNPEIKK 441 Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KE 519 IG NIKYD + YGI ++G D M+ SY +S GR H++ +A ++L + +E Sbjct: 442 IGQNIKYDLTIFANYGIELQGVAFDTMIESYTQNSTGR--HNMDDLAARYLGHKTIPFEE 499 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMID 578 + K+ + DKI ++ E+A E+++V ++L +L KL E +L+ +++ ++ P++ Sbjct: 500 LAGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQEPELVKLFDEIEMPLVG 559 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V+S++E G+ ID L SAEI K L +E ++ +G+ FNL+S KQL +ILF KL Sbjct: 560 VLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLVHAEAGQTFNLASTKQLQEILFEKLG 619 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P KT G T + L+++ + + K ++E R LSK+KSTY D LP INK+T R Sbjct: 620 LPVLKKTPKGAPSTNEEVLDELAQQGHLVPKLLMEHRGLSKLKSTYTDKLPQLINKKTGR 679 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT Y+ A T TGRL+S +PNLQNIPI+ + G++IR+AF++ K+++ADYSQIELRI+ Sbjct: 680 VHTSYNQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFVAREGYKIVAADYSQIELRIM 739 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH++ + F DIHR AAEIFGV + +V+ + RR AK INF +IYG+S F L+ Sbjct: 740 AHLSNDEGMINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGLS 799 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL I R+EA Y+ YF R+P + +++ + + GYVET+FGRR++ +I S + Sbjct: 800 NQLGIGRAEAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSGNAI 859 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 +R ER AINAP+QG+AADI + AMI + ++ D+ KM++Q+HDELVFEV ++I Sbjct: 860 LRKAAERVAINAPMQGTAADIIKVAMIGIDNAIRDND-EIKMIMQVHDELVFEVKADKID 918 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 SQ+I MEKA I+L+VPL + V NW E Sbjct: 919 HYSQLIKTEMEKA----ISLKVPLIAEVGVGENWDE 950 >gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens] Length = 939 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 358/995 (35%), Positives = 545/995 (54%), Gaps = 94/995 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L RK+ S FAV+FD Sbjct: 10 LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 64 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E+Y +YKANRP +P+ + Q+ + + A G P + ++G EADD+I T Sbjct: 65 AKGGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR 124 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+E V +K+G+ PE+++ AL Sbjct: 125 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDYLALM 184 Query: 187 GDSIDNIPGIPGIGYKTAALLL--------QEYGNLE---NILINASRIKQKKRRENILE 235 GDS DNIPG+PGIG KTA+ LL + Y L+ +LI ++ K + E Sbjct: 185 GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLLIRGAKTLPAK----LEE 240 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 + E A LS +L ++ DVP+ I L+ L + + +L LEF +N Sbjct: 241 HKEMAFLSYQLATIKVDVPLDIGLDDLQMGPEDPAKLYELYTLLEFKSWLN--------- 291 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK-LFLER 354 ++DRD K + S+ +E P LF Sbjct: 292 -----------------------DLDRDA--KRQELSA--------AAEPAPAGDLFSAP 318 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 ++ + +Y I++ W++KL+ +F T +DA ++ + ++ + Sbjct: 319 AEEEAPAAPAEAAYETILDQARFDVWLEKLKNAKLFAFDTETTGIDAQQAQLVGLSFAV- 377 Query: 415 DQKDDTSF-KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 Q ++ ++ + +I + +D+ +L LK E+ + LK+G + K+D Sbjct: 378 -QANEAAYIPLTHSYIGVPEQLDRDT---------VLRALKPILEDPNKLKVGQHAKFDM 427 Query: 474 LVL--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL 521 +L GI++RG D ML SYVL+S + HD+ S+AQK+L++T ++I Sbjct: 428 NILANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHDMDSLAQKYLNHTTVSFQDIA 487 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVV 580 + D+I+ Q +A E+++V L+L L KL + L V ++ P++ V+ Sbjct: 488 GKGAKQLTFDQIALEQAGPYAAEDADVTLRLHQTLFEKLSAIPSLASVLTDIEIPLVPVL 547 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 +++E G +D DLL S E+ +++LE ++++GE+FNL SPKQLG IL+ KL P Sbjct: 548 ARIERQGAFVDADLLGIQSIELGNKMVALEREAFEIAGEEFNLGSPKQLGVILYEKLGLP 607 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 KT GQ T + L ++ D+ + K ++E R +SK+KSTY D LP IN RT R+H Sbjct: 608 VLKKTAKGQPSTAEEVLAKLAEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIH 667 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T Y A TGRL+S +PNLQNIP++T G++IR+AF++P KL++ADYSQIELRI+AH Sbjct: 668 TSYHQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAH 727 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ L F N+LD+H AAE+F V + +V+ RR AK INF +IYG+ +L Sbjct: 728 LSRDEGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINFGLIYGMGAQKLGKD 787 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 + + A YI YF R+PG+ EY+++T+ G+VETIFGRR++ +INS K R Sbjct: 788 IGVDTKTAKAYIDTYFARYPGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNKPQER 847 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER AINAP+QG+AADI ++AM++V L L K++LQ+HDELV EV E+ + Sbjct: 848 AAAERTAINAPMQGTAADIIKKAMVAVDNWLCASGLDAKVILQVHDELVLEVREDLVDQV 907 Query: 941 -SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I VH E A L VPL V + V NNW E Sbjct: 908 REEIRVHMSEAA-----KLDVPLLVEVGVGNNWDE 937 >gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121] gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121] Length = 925 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 362/976 (37%), Positives = 548/976 (56%), Gaps = 82/976 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS++YRAF+A P LS DG P NAI G +M+ L++ I VIFD Sbjct: 22 MILVDGSSYLYRAFHAIPPLSTS-DGQPTNAIRGVTSMIKSLVKTYSDSPIV----VIFD 76 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++YP+YKA RP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 77 AKGKTFRDDMYPEYKAQRPSMPDDLRLQIEPIHSIIKAMGLPLISIGGVEADDVIGTIAK 136 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 I + G V + + DKD+ QLV+ L +T+ + +DIE V K+GI PE ++ AL Sbjct: 137 IVGETGREVIVSTGDKDMAQLVTDKVTLVNTMTDTLMDIEGVKNKFGIGPELIIDFLALM 196 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD +DNIPG+PG+G KTA LLQ GNLE+I I L + LS+K+ Sbjct: 197 GDKVDNIPGVPGVGEKTALGLLQGLGNLESIYSRLDEIAG-------LSFRGAKTLSKKM 249 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA-NIEPVVLD 305 ED +S+ A T CD + + + L Sbjct: 250 ------------------EDNKDMAFLSYQLA------------TIKCDVELDFDSIAL- 278 Query: 306 INTTENKGIAIE--TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 N +NK E T+++ T +K L T+ N +T + +Q Sbjct: 279 CNAPQNKAELKEWFTKLEFKTWLK-----ELDKPTADENDAETEE----------TQIEA 323 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 SY +++ + W+ K++ +F T +++ ++ + ++S + K Sbjct: 324 VEISYETVLDKEHFAIWLDKIQQAPLFAFDTETTSLNYMAAELVGFSVSV------EAGK 377 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 I + + + ++ +L +K E+ LK+G ++KYD VL Y I + Sbjct: 378 AAYIPVAHDYEGAPEQLDRDW----VLEQIKPVLEDASQLKVGQHLKYDANVLANYDIEL 433 Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQ 539 +G E D ML SY+ +S + HD+ S+A+K+LS+ + +EI ++I Q Sbjct: 434 KGIEFDTMLESYIFNSTANRHDMDSLAKKFLSHKSVSFEEIAGKGAKQKTFNQIELEQAA 493 Query: 540 EHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +A E++++ +L + KL +L+ +++ ++ P++ V+++ME TG ID DLL + Sbjct: 494 FYAAEDADITFRLHQAIWAKLEKTPELVSIFKEIELPLVPVLAKMEQTGALIDPDLLHEQ 553 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S+EI+ L LE ++++G+ FNLSSPKQL +ILF KL+ P KT GQ +TA+ + Sbjct: 554 SSEIATRLEELEIKAHEMAGQAFNLSSPKQLQEILFVKLELPILKKTPKGQ-PSTAEPIL 612 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 Q D + + I+E R LSK+KSTY D LP I K T R+HT Y A T TGRL+S +P Sbjct: 613 QELALDYELPRIIMEHRSLSKLKSTYTDKLPEMIQK-TGRIHTSYHQAVTATGRLSSTDP 671 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+T G++IR+AFI+P KLI+ADYSQIELRI++H+++ L + F N+ D+H Sbjct: 672 NLQNIPIRTAEGRRIRQAFIAPEGYKLIAADYSQIELRIMSHLSQDPGLLEAFANNKDVH 731 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 + AAE+F V +++V+ + RR AK INF +IYG+S F LA QL I R EA YI+RYF R Sbjct: 732 KATAAEVFEVALDEVTGEQRRRAKAINFGLIYGMSAFGLAKQLGIGRPEAQKYIQRYFER 791 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ Y+E T+ R+ GYVET+FGRR++ +I + + +R ER AINAP+QG+AAD Sbjct: 792 YPGVRTYMENTREMAREKGYVETLFGRRLYLPDIKASNAMMRQAAERTAINAPMQGTAAD 851 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I +RAMI +H L+D L KM+LQ+HDEL+FEV E +++ A + I+ ME + Sbjct: 852 IIKRAMIEMHAWLKDTDLDIKMILQVHDELIFEVKESDLSAAQEKILDIMENTS----AI 907 Query: 959 RVPLKVNIKVSNNWQE 974 VPL V + + W + Sbjct: 908 DVPLLVEAGIGDTWDQ 923 >gi|320322196|gb|EFW78292.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. B076] gi|320331847|gb|EFW87785.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 921 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 349/989 (35%), Positives = 533/989 (53%), Gaps = 96/989 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P L+ GLP A+ G NML L R++ S FAV+FD Sbjct: 6 LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA + + Y LE + R K + E+ Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ I L+ L + + +L+ LEF I + D A Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E + ++ T E K A E ++ SQF + Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 W++KL +F ++ DA ++ + ++ + + + Sbjct: 326 ---------------------WLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQTHE 363 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-- 476 + ++ + +D+ +L LK E+ K+G + K+ +L Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414 Query: 477 ------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526 GI ++G D +L SYVLDS + HD S+ K+L++T +EI Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585 + D+I+ Q ++A E +++ L+L + +L + L V ++ P++ V++ +E Sbjct: 475 QLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIER 534 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P +KT Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Y Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A+ Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F N LD+HR AAE+FGV +E V+ MRR AK INF +IYG+S F LA Q+ + R Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 ++ Y+ RYF R+PG+ +Y+E+T+ + G+VETIFGRR++ +IN+ S+R ER Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAP+QG+AADI ++AM++V+ LE+ L +++LQ+HDELV EV E+ + S+ I Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A L VPL V + V NNW E Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDE 919 >gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] Length = 936 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 363/991 (36%), Positives = 551/991 (55%), Gaps = 83/991 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LFL+DG + IYRA +A R G +A+ GF N L ++L RKE +H AV+F Sbjct: 4 LFLLDGMALIYRAHFALSKNPRFTSSGFNTSAVMGFTNTLMEVL---RKEK-PTHMAVVF 59 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A T R+ + YKA+R +PE L LP + F IP I GFEADDII T Sbjct: 60 DTEAPTERHTDFVAYKAHREAMPEDLSKALPYIFKLILGFNIPVITSDGFEADDIIGTLA 119 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP-EKMV 180 AE++G+ V ++ DKD QLVS +Y + E + ++ V+ KW + E+++ Sbjct: 120 KKAEQKGYKVYCMTPDKDFAQLVSDNIFIYKPARMGNDMEILGVKEVLAKWEVERVEQVI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + L GD++DNIPGIPG+G KTA L+++YG++ENI+ ++ +K K RENI +A+ Sbjct: 180 DILGLWGDAVDNIPGIPGVGEKTAKSLIKQYGSMENIIAHSHELK-GKLRENIETHAQQG 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPR--LISFLKALEFTKLINRVATTYDCDAAN 298 +S+KL + D P+ L+ LE C R L LEF L RV D + Sbjct: 239 LISKKLATIILDAPVE--LDEAGLEMCEPSRELLEPLFAELEFRTLGRRVF----GDGYS 292 Query: 299 IEPVVLDINTTENKGIAIETE------IDRDTTIKTSQFSSLSDQTSKI--NSEQTPQKL 350 I TE K ++I+ + +D TT+ + + + N T + Sbjct: 293 I---------TEIKNVSIQQDLFGNEVVDGRTTMTVDATDIYEPEVAAVAKNINNTEHQY 343 Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 L D++ K + ++ L T S F T DA + + ++ Sbjct: 344 HLA------------DTFEKRA------ELIRLLSTQKSICFDTETTGTDANQCELVGLS 385 Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 S K E ++ + V+ + + I+ K FEN KIG NIK Sbjct: 386 FSIK--------KGEAWYVPVPVNCDE--------IQPIVDEFKPIFENPAIGKIGQNIK 429 Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----KSRK 525 +D LVL Y ++M+G D ML Y++D + H++ +A+ +L Y+ I K Sbjct: 430 FDMLVLKYYNVTMQGELFDTMLAHYIIDPD-TRHNMDILAENYLGYSPVSITTLIGAKGK 488 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 + + +++++A E+++V LQL + PKL + ++ P+I V++ +E Sbjct: 489 GQGTMRDVEIEKIKDYAAEDADVTLQLKEVFEPKLQQVGGTKLATDIENPLIYVLADIEF 548 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK- 644 G++ID D LK+ S ++ ++ LE+ +Y+ +G KFN++SPKQLG++LF KL + AK Sbjct: 549 EGVRIDHDTLKEFSKDLETDISKLEKTVYEKAGVKFNIASPKQLGEVLFEKLNLDAKAKK 608 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TKTGQ++T +D+ + I+++IL++RQL K+KSTY D+LP +N +T RVHT Y+ Sbjct: 609 TKTGQYQT-GEDVLLALANKSDIVRDILDFRQLQKLKSTYVDALPLMVNPKTGRVHTSYN 667 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAK 763 A TGRL+S PNLQNIPI+T+ G+++R+AFI +I SADYSQIELRI+A I+K Sbjct: 668 QAVAATGRLSSNNPNLQNIPIRTERGREVRKAFIPRNDDHVIVSADYSQIELRIIAEISK 727 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 + F +DIH AA+++G +++V MRR+AK +NF IIYG S F L+ L I Sbjct: 728 DANMMDAFIQGIDIHTATAAKVYGKTLDEVDGTMRRNAKAVNFGIIYGQSAFGLSQNLNI 787 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 PR EAAD I +YF ++PGI Y+ T NF R+NG+V+T+ GRR + +INS +++R Sbjct: 788 PRKEAADIIDQYFAQYPGIKNYMSDTMNFARENGFVQTLMGRRRYLRDINSANATVRGYA 847 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER AINAPIQGSAAD+ + AMI++H+ + KL ++M +Q+HDELVF+V + EI I Sbjct: 848 ERNAINAPIQGSAADMIKIAMINIHREFKKQKLDSRMTMQVHDELVFDVHQSEIEIVKPI 907 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I+ +M+ A VP+ V I NW E Sbjct: 908 IMQNMQTA----FKTEVPIVVEIGTGANWLE 934 >gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens] gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens] Length = 896 Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust. Identities = 368/981 (37%), Positives = 555/981 (56%), Gaps = 104/981 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS+ +RAF+A P L+ GLP AI G NM+ K++++ + E IA V+FD Sbjct: 5 LILIDGSSYFFRAFHALPPLTNSK-GLPTGAIYGVANMIKKIIKDYQPEEIA----VVFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 TFR+E YP+YKA+RP +P+ L Q PL++L QA G+P + I G EADD+I T Sbjct: 60 AKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQL-LQAMGLPLLIIDGVEADDVIGTLA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A ++G V I + DKD+ QLV+ L +T+ +DI+ V K+G+ PE+++ L Sbjct: 119 KQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS+DNIPG+ G KTA L EY L+N+L +A+ I K I EY Sbjct: 179 IGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLDHANEIGGK-----IGEY--------- 224 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LR +P HL L +L++ L+ +N++ Sbjct: 225 ---LRASIP------HLPLSK----KLVTIKTDLDLPLNLNQL----------------- 254 Query: 306 INTTENKGIAIETEIDRDTTIKTS---QFSS-LSDQTSKINSEQTPQKLFLERLQKLSQY 361 + DR+ IK + +F S L + + ++++P+++ Sbjct: 255 ----------MPKPADREQLIKLTRELEFKSWLKELLQEEENQKSPKEMGAS-------- 296 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLDQKDD 419 NN SY I + + W+ LE S F I T+T +D ++ + I+++ ++++ Sbjct: 297 --NNKSYEIITTHQQLNHWLNMLEQ--SQQFCIDTETTNLDVMQAELVGISLAV--EEEN 350 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 S+ I L+ HT G L KE +L+ LK EN KIG NIKYD VL Sbjct: 351 ASY------IPLA-HTD----GSTQLVKEEVLTALKPILENPAIGKIGQNIKYDYSVLKN 399 Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534 YGI+++G D ML SYVL+SG HD+ S+A K+L Y + +++ + D+I Sbjct: 400 YGITLKGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGAKQLRFDQIP 459 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + +A E++++ L+L L P ++ + L +V ++ P++ V++ ME+ G+ ID + Sbjct: 460 VEKAGIYAAEDADITLRLHHKLYP-MLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVI 518 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L++ + + + + SLE+ L+G+ FNL+SPKQL +ILF + K P AKT TGQ +TA Sbjct: 519 LEKHGSRLKEQMKSLEQEAIQLAGKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQ-PSTA 577 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 + + Q D + ILE+R LSK+ STY D+LP IN +T RVHT Y+ A TGRL+ Sbjct: 578 ESVLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLS 637 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIPI+++ G+ IR AFI+P +++ADYSQIELRI+AH+++ L + F N Sbjct: 638 SSDPNLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANG 697 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH A+EIF N++ VS + RR AK +NF +IYG+S F LA Q+ + R +A YI Sbjct: 698 WDIHAATASEIFQTNLDAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHYIDT 757 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF R+P + EY+E+T+ Q GYVET+FGRR++ EINS + ER AIN P+QG Sbjct: 758 YFRRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGPMQG 817 Query: 895 SAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 +AADI ++ M++V K + KM++Q+HDELVFEV +E + II ME+ Sbjct: 818 TAADIIKKTMLAVSNWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECRAIIHKLMEQT-- 875 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 + L VPL V+I +NW + Sbjct: 876 --VKLSVPLVVSIGTGSNWDD 894 >gi|332991521|gb|AEF01576.1| DNA polymerase I [Alteromonas sp. SN2] Length = 935 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 353/982 (35%), Positives = 531/982 (54%), Gaps = 71/982 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGSS+++RAF+ P L+ G AI G NML L++ +H AVIFD Sbjct: 9 FILVDGSSYLFRAFHGLPPLTNSK-GQDTGAIYGVVNMLKSLIRQYNP----THMAVIFD 63 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++IY +YKANRP +PE L Q+ + +A G+P I G EADD+I T Sbjct: 64 AKGKTFRDDIYEEYKANRPPMPEELRSQIEPLHTIIKAMGLPLIVESGVEADDVIGTLAC 123 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + G I + DKD+ QLV+ L +T+ ++ +DIE V K+GIPPE ++ AL Sbjct: 124 RATEHGIDTLISTGDKDMAQLVNENVTLINTMTDQIMDIEGVNTKFGIPPELVIDFLALK 183 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAETA 240 GD +DNIPG+PG+G K+A LL G + I N +I K + EY E A Sbjct: 184 GDKVDNIPGVPGVGDKSAQALLNGIGGISAIYDNLDKIADLSFRGSKTMATKMQEYEEQA 243 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 RLS L + D+ + ++ L + L S EF + ++ D E Sbjct: 244 RLSYTLATIAIDLDLQYKIDELCPTLPDNETLQSMFAEFEFKRWHTEISALLASDGN--E 301 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 P + EN S SD S P+ Sbjct: 302 P-----SKAENG----------------KSTSDASDSESNDTDVAQPES----------- 329 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 I+ Y +++ + W+++L+ + T +++ ++ + ++ ++ Sbjct: 330 -NIDKSGYDVVLDEATFEAWIEELKAAPLIAVDTETTSVNYMEAELVGVSF-CIEPGAAA 387 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 V + D S+D +LS LK E+E +K+G +IKYDK VL Y Sbjct: 388 YVPVAHDYPDAPTQLSRDY---------VLSALKPILESETIIKVGQHIKYDKNVLAHYD 438 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536 I++ G D ML SYVL+S HD+ S+A +L + +EI + ++I Sbjct: 439 ITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLGHKTIHFEEIAGKGAKQLTFNQIGLE 498 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + +A E++++ ++L + KL E KL + ++ P+ V+S+ME G+ I+ L Sbjct: 499 EAGPYAAEDADITMRLHQAIWAKLENEPKLKALLVDVEVPVACVLSRMEQQGVLIESQRL 558 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 +Q S +++ + LE+ +++ +GE FNL SPKQL ILF K+ P KT G T+ + Sbjct: 559 RQQSQDLATRIAELEKEVHEEAGEVFNLGSPKQLQHILFEKMSLPVIKKTPKGAPSTSEE 618 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 L+++ + P+ K ++E+R L+K+K+TY D LP IN RT RVHT Y A T TGRL+S Sbjct: 619 VLQELAL-EFPLPKKLMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQAITATGRLSS 677 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIPI+ + G+K+R+AF+ K+++ADYSQIELRI+AH++ L F + Sbjct: 678 TDPNLQNIPIRNEEGRKVRQAFVPREGYKIVAADYSQIELRIMAHLSGDEGLLDAFAHGR 737 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH+ AAE+FGV +++V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Y Sbjct: 738 DIHKATAAEVFGVTLDEVTTEQRRSAKAINFGLIYGMSAFGLAKQLNIPRHEAQKYMDLY 797 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PG+ EY++ T+ ++ GYVET+FGRR++ +I + + R ERAAINAP+QG+ Sbjct: 798 FERYPGVLEYMDSTREGAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINAPMQGT 857 Query: 896 AADITRRAMISVHK---SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 AADI + AMI V SLE + M++Q+HDELVFE+ EE + + IV ME+A Sbjct: 858 AADIIKMAMIKVDDWITSLESDDVL--MMMQVHDELVFEIREEHLEEQVKNIVSLMEQAA 915 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + L VPL V+ V +NW E Sbjct: 916 V----LNVPLVVDAGVGDNWDE 933 >gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] Length = 920 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 352/986 (35%), Positives = 549/986 (55%), Gaps = 89/986 (9%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA +P ++ K GL +A+ GFCN L ++L + +H V Sbjct: 4 LFLLDAYALIYRSYYAFLKSPRINSK--GLNTSAVMGFCNTLNEVLTKEK----PTHIGV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD+ TFR+E +PDYKA R + PE + +P+++ +A IP ++ GFEADD+I T Sbjct: 58 AFDH-GKTFRHEAFPDYKAQREETPEDIRQSVPIIKQILEAMHIPILQADGFEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--------DTVKEEKIDIEHVIKKWGIP 175 +G +++ DKD QL+ P +Y +T+ E++++ K+GI Sbjct: 117 VATRFGADGIDTFMLTPDKDYGQLIRPNVHMYRPRHGGGYETLGEKEVE-----AKYGIS 171 Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 P +++ L AL GDS DN PG PG+G KTAA L+ ++G+++N+L + IK K RE + Sbjct: 172 TPAQVIDLLALMGDSADNFPGCPGVGEKTAAKLINQFGSIDNMLQHTDEIK-GKLREKVE 230 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 + R+S+ L +RTDVPI I LE L +E + RL + LEF LIN+ Sbjct: 231 HAKDDIRMSKYLATIRTDVPIKIELEELKVEKADENRLRELFEELEFKTLINKF------ 284 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 +N +E K E ++D ++ TS +TP+K + Sbjct: 285 -----------LNKSEAKQKNTEKQLDL-----------FAENTS--GRAETPEKANYKT 320 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 L+ Y I N ++Q+ T G S T + DA ++ + ++ S Sbjct: 321 LKTTPH------EYKLIGNEDEMQRICDFFMTKGFVSLDTETTSTDAISAELVGLSFSV- 373 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 +++ +F V I D Q++T I+ K +ENE LKIG NIKYD Sbjct: 374 --EENRAFYV-AIPAD-----RQEAT-------RIVGIFKPLYENEQILKIGQNIKYDYE 418 Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIP 529 VL YG++++G D M+ Y++ H++ +A+ L Y +E+L + K Sbjct: 419 VLSHYGVTLQGKMFDTMIAHYLIQP-ELHHNMDYMAETLLGYRTIHIEELLGPKGKKQRN 477 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 + +S + + E+A E++++ L+L +L P L L ++ ++ P++ V++ ME+ G+ Sbjct: 478 MRDLSPTDIYEYAAEDADITLRLKHVLEPHLKELGLEELFWNIEMPLVRVLADMELNGVC 537 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTG 648 +D + L++ S + + E+ IY +GE FN+ SPKQ+GDILF KL+ KTKTG Sbjct: 538 LDTEALQETSRIFTDRMKQYEQEIYKEAGETFNIGSPKQVGDILFGKLQIMDKPKKTKTG 597 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q+ T+ + L+ + +P+++NIL +R + K+ STY D+LP IN RT +HT ++ A T Sbjct: 598 QYVTSEEVLQSLEA-KHPVVRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQAQT 656 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++TD G++IR+ FI SADYSQIELRI+AH++ + Sbjct: 657 STGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMM 716 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F DIHR AA+I+ +IEKV+ R+ AK NF IIYGI+ + LA ++ IP SEA Sbjct: 717 EAFREGHDIHRATAAKIWHEDIEKVTDAQRKKAKQANFGIIYGITTYGLAQRMGIPNSEA 776 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 + I+ YFH FP + Y+E+ K R GY ET+F RR + +INS +++R ER AI Sbjct: 777 RELIQDYFHTFPKVKAYMEQAKETARAKGYAETLFHRRRYLPDINSRNATVRGFAERNAI 836 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+ ADI + AM+ + K ++ + +KM+LQ+HDEL F V EE +I++ M Sbjct: 837 NAPIQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEEREQVERIVIEEM 896 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 + AC L VPL + +NW E Sbjct: 897 QHAC----QLNVPLTADAGWGSNWLE 918 >gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38] gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38] Length = 950 Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust. Identities = 354/999 (35%), Positives = 555/999 (55%), Gaps = 81/999 (8%) Query: 4 ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + LFL+D + I+R +YA P ++ K G+ +AI GF N L +++ + + H Sbjct: 3 QKRLFLLDAYALIFRGYYAFIKNPRINSK--GMDTSAIMGFMNSLMDVIKREKPD----H 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV FD +R E+Y +YKA+R + PE + +P ++ +A IP IE GFEADD+ Sbjct: 57 LAVAFDKGGSDYRFEMYQEYKAHRVETPEAIKIAVPYIQELLRAMHIPIIEKAGFEADDL 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP----- 175 I T AEKEGF V +++ DKD QLVS +Y + + + I+ WG+P Sbjct: 117 IGTLAKQAEKEGFKVFMVTPDKDFAQLVSENIFMYKPAR-----MGNDIEIWGVPEVLAK 171 Query: 176 -----PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 P++++ + GDS DNIPG+PG+G KTA L EYG LEN+L N ++K + Sbjct: 172 FEIERPDQVIDFLGMMGDSADNIPGLPGVGEKTAKKFLAEYGTLENLLANTHQLK-GAMK 230 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 + I E LS+KL + D P+T + L + + + + LEF ++ + Sbjct: 231 DKIEANKELGILSKKLATILLDCPVTFDADDYELSKPDVEKTDALFQELEFRQMKAQFDK 290 Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS--QFS--SLSDQTSKINSEQT 346 + + + + NT+E I I + K++ QF SD++ E T Sbjct: 291 LFGS-GKEYDEIDANGNTSE-----IPQPIKKAPAKKSNEDQFDLFGFSDESD----EPT 340 Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406 + L+ + + Y I ++ +Q L S F T +DA +++ Sbjct: 341 ANHSYYATLENTTHF------YQIIQGDLPVKLLMQNLLNQTSVCFDTETTGIDALNAEL 394 Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466 + ++ S K V +D TL ++ + FFENE+ KIG Sbjct: 395 VGMSFSFEKGKG------------FYVPFPEDQEEAQTLIEK----FRPFFENENIEKIG 438 Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----L 521 N+KYD +L Y + ++G D M+ Y+++ H++ +++ +L Y K I Sbjct: 439 QNMKYDLKILSNYNMQVKGKLFDTMIAHYLINPDMR-HNMDVLSETYLKYAPKSIETLIG 497 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL--LHVYERLDKPMIDV 579 K K+ + + + ++E+A E++++ QL +P I+EK+ +++ ++ P++ V Sbjct: 498 KKGKNQLSMRDVPLEDIKEYATEDADITFQLKEHFQP--ILEKVGTKKLFDEIEIPLVPV 555 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 ++ ME GI++D + LK +S ++ K + + E+ IY+ +GEKFNL+SPKQLGDILF KLK Sbjct: 556 LADMEKEGIRLDVEFLKNMSVDMQKEIDAFEQQIYETAGEKFNLASPKQLGDILFDKLKI 615 Query: 640 PSGAK---TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 GAK TKTGQ+ T + L + ++ I+++ILEWRQ+ K++STY D+LPN ++K+T Sbjct: 616 -GGAKQKKTKTGQYATGEEVLSYL-ANEHQIVRDILEWRQMVKLQSTYIDALPNQVDKKT 673 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIEL 755 RVHT Y TGRL+S PNLQNIPI+T+ G+ IR+AFI+ L+SADYSQIEL Sbjct: 674 GRVHTDYMQTVAATGRLSSTNPNLQNIPIRTEKGRLIRKAFIARDENYTLLSADYSQIEL 733 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+A + + + F+N DIH+ AA++F + +++V+ + R HAKT+NF IIYG+S F Sbjct: 734 RIIAALCGEENMIKAFQNHEDIHKSTAAKVFNIPLDEVTKEQRSHAKTVNFGIIYGVSAF 793 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 L+ Q + R E+A+ I+ Y+ +P + ++ +F R+NGYVETI GRR + +INS Sbjct: 794 GLSNQTNLSRKESAELIEAYYQTYPKLKSFMTSQVDFARENGYVETISGRRRYLKDINSA 853 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + +R ER A+NAPIQGSAADI + AMI++HK L +KMLLQ+HDELVF+V Sbjct: 854 NAIVRGGAERNAVNAPIQGSAADIIKIAMINIHKKLTSENWKSKMLLQVHDELVFDVHNS 913 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+ +I H ME A + VPL V I + NW E Sbjct: 914 ELEKIQPMIKHEMENA----FKMAVPLDVEIGLGKNWLE 948 >gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223] gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223] Length = 890 Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust. Identities = 345/941 (36%), Positives = 533/941 (56%), Gaps = 67/941 (7%) Query: 48 LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107 ++++ ++ + AVIFD TFR+E+Y YKANRP +P+ L Q+ + +A G+ Sbjct: 1 MIRSMMRQFASDRMAVIFDAKGKTFRDEMYDQYKANRPPMPDDLRCQVEPLHQVIRAMGL 60 Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167 P + I+G EADD+I T A + G V I + DKD+ QLV L +T+ +D E Sbjct: 61 PLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQLVDENITLINTMTNVVLDREG 120 Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-- 225 VI+K+GIPPE ++ AL GD +DNIPG+PG+G KTA LLQ G LE++ N +I Sbjct: 121 VIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEDLYANLDKIAAL 180 Query: 226 ----QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 K + + E + A LS +L ++ DV + + L+ + + L+++ L F Sbjct: 181 GFRGSKTMAQKLEENRDNANLSYQLATIKCDVELEESPQTLLKQTPDRDALMTWYGKLAF 240 Query: 282 TKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341 + + LD T GI T + ++ SS++ + Sbjct: 241 KSWLTEL---------------LDGGT----GIV--------TADEQAKASSVTASNAVS 273 Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401 N+ P+ + I+ Y I+N +D QW++KL+ +F TD++D Sbjct: 274 NAAAIPESPAAQ---------IDRSQYQTILNEQDFNQWLEKLQQAELFAFDTETDSLDY 324 Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461 + + ++ + + E +I ++ H D+ + +++ LK E+E Sbjct: 325 MVANLVGMSFAVAEG--------EAAYIPVA-HDYLDAP-QQLDRAWVIAQLKPLLEDES 374 Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517 K+G N+KYD V+ RYG+ +RG D ML SYV +S HD+ S+A ++L ++ Sbjct: 375 KAKVGQNLKYDASVIARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISF 434 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE---KLLHVYERLDK 574 ++I K+ + ++I + ++A E+++V L+L + P ++E KL VY ++ Sbjct: 435 EQIAGKGKNQLTFNQIDLQEAAQYAAEDADVTLRLHQRISP--LIEQDSKLAQVYSEIEM 492 Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P++ V+S++E TG+ ID LL S EI+ L LE+ Y+L+G+ FNLSSPKQL ILF Sbjct: 493 PLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEQKAYELAGQSFNLSSPKQLQTILF 552 Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 ++K P KT +G T + L+++ D P+ K ++E+R L+K+KSTY D LP IN Sbjct: 553 EQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTDKLPKMINP 611 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754 T RVHT Y A T TGRL+S +PNLQNIP++ + G++IR+AF++P K+++ DYSQIE Sbjct: 612 NTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIMAVDYSQIE 671 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LRI+AH++ L F DIH AAEI GV IE+VS + RR AK +NF +IYG+S Sbjct: 672 LRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSA 731 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++ + GYVETIFGRR+H EI S Sbjct: 732 FGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITS 791 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVP 933 + R ERAAINAP+QG+AADI ++AM+ V + ++ + K+L+Q+HDELVFEV Sbjct: 792 RNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVE 851 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E ++ + ME A L VPL +NW++ Sbjct: 852 ESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQ 888 >gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8] gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8] Length = 942 Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust. Identities = 355/981 (36%), Positives = 542/981 (55%), Gaps = 59/981 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R PV AI G NML +L K+ A + A +FD Sbjct: 4 LLLVDGSSYLYRAFHAMPDL-RNSANEPVGAIQGVLNMLRRL----HKDYPAEYSACVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++IYP+YKANR +P+ L Q+ + +A G P I G EADD+I Sbjct: 59 AKGKTFRDDIYPEYKANRASMPDDLRSQIEPLFETIRAMGWPLIIEDGVEADDVIGALAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE------EKIDIEHVIKKWGIPPEKMV 180 AE++G I + DKD+ QLV+ + +T+++ + +D+ V K+GIPP ++ Sbjct: 119 QAEQQGIKTIISTGDKDISQLVNEQITVVNTMRDAFRKTDDVLDVAGVENKFGIPPSLII 178 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L GD+ DN+PG+ +G KTA L+EYG L+NI+ NA IK EN+ + Sbjct: 179 DYLVLIGDTSDNVPGVEKVGPKTAVKWLKEYGTLDNIVANADSIK-GVVGENLRKALPWL 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF---TKLINRVATTYDCDAA 297 +R+L+ +R DV I + L+ + + +L + EF + ++ + + Sbjct: 238 PTARELITIRCDVGIREHFDELVQQAPDKAKLAALFDHFEFRSWKRELDNMPDAVSQPSV 297 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + P + + A +T +T K ++ T I+ + Sbjct: 298 ELAPAGTSGDLFGSPATAPQTNAGAVSTPKAEPKTTNHHYTPNISRQ------------- 344 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I++ + W+ KL F T ++D ++ + ++ S Sbjct: 345 ----------YETILSEAVLDTWLAKLNQAELICFDTETTSLDPLTAQIVGMSFSVAAGT 394 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 ++ L+ H D+ + L E+L+ K EN K+G N+KYDK VL Sbjct: 395 G--------AYLPLT-HDYFDAPSQLPLA-EVLAKFKPLLENPTIKKVGQNLKYDKHVLA 444 Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 +GI++ G D +L SYVL+S R H + ++ + L + +++ + +++ Sbjct: 445 NHGIALNGIAHDTLLQSYVLESHRG-HGMDELSARHLGIEPISFEQVAGKGAKQVGFNQV 503 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + E+A E++++ LQL L P+++ + KL +Y +++ P ++ + +E G+ ID Sbjct: 504 TIEVAAEYAAEDADITLQLHEALSPQVLQDDKLNFIYSQVEMPSMECLFTIERNGVLIDA 563 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 ++L + S EI L+ LE ++L+G+ FNL SPKQL +ILF KL KT +G + Sbjct: 564 NMLNRQSNEIGMKLMELEAKAFELAGQPFNLGSPKQLQEILFGKLGIKPIKKTPSGA-PS 622 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 T +D+ Q D P+ K +LE+R L+K+KSTY D LP IN T RVHT Y+ A +TGR Sbjct: 623 TDEDVLQELALDYPLPKVLLEYRGLAKLKSTYTDKLPKMINAHTGRVHTNYNQAVAITGR 682 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 LAS +PNLQNIP++T G++IR AFI+PP ++SADYSQIELRI+AH++K + Q F Sbjct: 683 LASSDPNLQNIPVRTAEGRRIREAFIAPPGSHIVSADYSQIELRIMAHLSKDAGMLQAFA 742 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 N+ DIHR AAEIFGV V + RR+AK INF +IYG+S F LA L I RS A +YI Sbjct: 743 NNEDIHRATAAEIFGVERSAVDNEQRRYAKVINFGLIYGMSAFGLAQNLNIERSAAQNYI 802 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 +RYF R+PG+ +Y++ T+ ++ GYVET FGRR+ EINS R ERAAINAP+ Sbjct: 803 ERYFARYPGVRQYMQDTRELAKEKGYVETYFGRRLWVPEINSANGMRRAGAERAAINAPM 862 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AAD+ + AMI+V K L+D +L TK+++Q+HDELV EV + E+ Q + M+ Sbjct: 863 QGTAADLIKLAMIAVDKWLKDEQLNTKLIMQVHDELVLEVADSELELVKQKLPELMQSVA 922 Query: 953 LPKINLRVPLKVNIKVSNNWQ 973 L VPL + V +NW+ Sbjct: 923 ----KLDVPLLAEVGVGSNWE 939 >gi|330957163|gb|EGH57423.1| DNA polymerase I [Pseudomonas syringae pv. maculicola str. ES4326] Length = 921 Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust. Identities = 345/989 (34%), Positives = 536/989 (54%), Gaps = 96/989 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L R++ S AV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPESPLAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA + + Y NL+ + R K + E+ E Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLDKVATLPIR-GAKTLAAKLEEHRE 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ I L+ L + + L+ LEF I Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDALMELYAELEFKSWIE------------ 287 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 ++ RD + Q ++ + T + +++ ++ LE+ Q Sbjct: 288 --------------------DLQRDAK-RAGQELTVEEPT--VEAKEAAYEVILEQTQ-- 322 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 W++KL+ +F ++ DA ++ + ++ + + + Sbjct: 323 ------------------FDAWLKKLQATPLFAFVTQSNGTDAQRAQLVGLSFA-IQTHE 363 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-- 476 + ++ + +DS +L LK E+ +K+G + K+ +L Sbjct: 364 AAYIPLTHSYMGVPQQLDRDS---------VLKTLKPLLEDPGKIKVGQHAKFAINLLAN 414 Query: 477 ------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526 GI ++G D +L SYVLDS + HD S+ K+L++T ++I Sbjct: 415 CAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAK 474 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585 + D+I+ Q +A E +++ L+L + +L + L V ++ P++ V++++E Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLARIER 534 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P +KT Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Y Sbjct: 595 ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+AK Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDE 714 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F N LD+HR AAE+FGV +E V+ MRR AK INF +IYG+S F LA Q+ + R Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELEGVTQDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 ++ Y+ RYF R+PG+ +Y+E+T+ + G+VETIFGRR++ +IN+ S+R ER Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPSLRKGAER 834 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAP+QG+AADI ++AM++V+ L+ L +++LQ+HDELV EV E+ + S+ I Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLDASGLDARVILQVHDELVLEVREDLVDQISEQIR 894 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A L VPL V + + NNW E Sbjct: 895 PHMSGAA----ELAVPLLVEVGIGNNWDE 919 >gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212] gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212] Length = 916 Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust. Identities = 353/976 (36%), Positives = 538/976 (55%), Gaps = 73/976 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS++YRA++A P L R + P AI G NML +L K+ A + A +FD Sbjct: 4 VLLVDGSSYLYRAYHALPDL-RNRNNEPTGAIHGVLNMLRRL----HKDYHADYSACVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EIYP+YKA+RP +P L Q+ + +A G P + I G EADD+I T Sbjct: 59 AKGKTFRDEIYPEYKAHRPSMPMELAVQIEPLHACIRAMGWPMLIIDGVEADDVIGTLAR 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + I + DKD+ QLV L +T+ E +D V+ K+G+PPE+M+ L Sbjct: 119 QAVEADMRCIISTGDKDIAQLVDSHISLVNTMSNEILDEASVLAKFGVPPERMLDYLMLV 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--KRRENILEYAETARLSR 244 GD+ DN+PG+ +G KTA L +YG+L+NI+ +A IK L++ +TAR Sbjct: 179 GDTSDNVPGVHKVGPKTAVKWLTQYGSLDNIIAHADEIKGAIGDNLRTALDWFDTAR--- 235 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 +L+ ++ DV + I + L L+ + +L + L+ + + Sbjct: 236 QLITIKCDVDLPIKITDLALQPQDTEQLARLYEQLDMRMSLREL---------------- 279 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 + +G A + T+ +Q ++ K Q+ Sbjct: 280 ----RQQRG-ASDPSQPGSATVSENQLAAGDGGNDKAVMGQSV----------------- 317 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 +Y I ++ W+ +L+T S T +++ +K + I SF V Sbjct: 318 --TYQTIFTDAELDDWLTRLDTAQLVSIDSETTSLNPMQAKLVGI-----------SFCV 364 Query: 425 ETIFID-LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 E+ L + + L LK + E+ K+G N+KYDK V + I + Sbjct: 365 ESHHAAYLPLMHRYPGVPQQLSFDRALKKLKPWLESATKPKLGQNLKYDKHVFANHDIQL 424 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQ 539 G D +L SYVL+S R H++ S+A + L + + ++ I D+++ Sbjct: 425 NGIAHDTLLQSYVLESHRP-HNMDSLALRHLDVKTISYDDVTGKGVKRIGFDEVAIDTAT 483 Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++A E++++ +L L P + +L H+Y ++ P++ V+ ++E G+ +D LL++ Sbjct: 484 QYAAEDADITFRLHQALYPDIQSNAQLSHIYREIEMPILSVLFEIERNGVLLDYKLLQKQ 543 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S E+ + L +LE+ YD+SG+ FNL+SPKQ+ +ILF +LK P KT TG T L+ Sbjct: 544 SHELGEKLHALEQQAYDISGQPFNLNSPKQIQEILFHQLKLPIVKKTPTGVPSTDEDVLQ 603 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 Q+ D P+ K +L +R LSK+KSTY D LP +++ T RVHT YS A +TGRLAS +P Sbjct: 604 QLAL-DYPLPKLLLNYRSLSKLKSTYTDKLPLMMDRNTGRVHTNYSQAVAVTGRLASSDP 662 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIP++T G++IR AFI+P ++ISADYSQIELRI+AHI++ L + F DIH Sbjct: 663 NLQNIPVRTSEGRRIREAFIAPAGYRIISADYSQIELRIMAHISQDEGLLKAFAAGEDIH 722 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 AAEI G+ + +V + RRHAK INF +IYG+S F LATQL I RS A Y++RYF R Sbjct: 723 SATAAEILGIPLNQVDQEQRRHAKVINFGLIYGMSEFGLATQLGIERSAARAYMERYFAR 782 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +P + Y+++T+ R+ GYVET+ GRR+ EIN+ + R ERAAINAP+QG+AAD Sbjct: 783 YPKVESYMQQTREKARRLGYVETVLGRRLWLPEINNANGNRRQGAERAAINAPMQGTAAD 842 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I + AMI+VH L KL +K+++Q+HDELV EVPE E+ +I S+ K + L Sbjct: 843 IIKLAMIAVHSWLHKEKLHSKLIMQVHDELVLEVPENEVA----LIKSSLPKYMGDVLQL 898 Query: 959 RVPLKVNIKVSNNWQE 974 VPL + I V +NW++ Sbjct: 899 DVPLVIEIGVGDNWEQ 914 >gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] Length = 932 Score = 575 bits (1482), Expect = e-161, Method: Compositional matrix adjust. Identities = 360/994 (36%), Positives = 532/994 (53%), Gaps = 98/994 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A L+ DG+P A+ G NML +L R + + + AV+FD Sbjct: 9 LLLVDGSSYLYRAYHAMAQLTAP-DGVPTGALYGVLNMLRRL----RADYVHDYCAVVFD 63 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122 FR+E++ DYKA RP +P+ L PQ LP LVRL G P + + EADD+I Sbjct: 64 AKGKNFRHEMFADYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVVPQVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T + G+ V I + DKD+ QLV+ L +T+ E +D + V K+G+ P+++ Sbjct: 120 TLAVQGGEAGWDVVISTGDKDMAQLVNERVTLVNTMSGETLDTDGVKAKFGVRPDQIRDY 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD +DN+PG+ G KTA L+ Y L ++ +A IK K EN+ L Sbjct: 180 LALMGDKVDNVPGVEKCGPKTAVKWLEAYETLAGVMEHAGEIK-GKVGENLQAALSQLPL 238 Query: 243 SRKLVMLRTDV----PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY------ 292 S LV ++TDV ++ LE L +L + K F + + Sbjct: 239 SYDLVTIKTDVDLHAELSDGLESLRRTPPKWAQLAADFKRWGFKSWLKEAESRMHEAAES 298 Query: 293 ----DCDAANIEPVVLDINTTENKGIAIETE-IDRDTTIKTSQFSSLSDQTSKINSEQTP 347 D I + L++ + + A E +D +QF++L D+ SK Sbjct: 299 DLFGSADVGEIAALALEMPSEKQPEKAAAPEKLDYQAVTTETQFAALLDKLSKA------ 352 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 E IG T ++DA +++ + Sbjct: 353 -------------------------------------ERIG---IDTETTSLDAMNAQLV 372 Query: 408 AIAISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466 I+I+ F+ E +I L S + + ++ L LK EN KIG Sbjct: 373 GISIA---------FEAGEAAYIPLG--HSMTAAPQQLDLQDTLGRLKPHLENGSLKKIG 421 Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILK 522 N+KYD+ V YGI++RG D ML SY+++S H + ++++WL T + + Sbjct: 422 QNLKYDQHVFANYGIALRGIAGDAMLASYIVES-HLGHGLDELSERWLGLPTITYESLCG 480 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 I ++ Q E+A ++++ L+L LR ++ EK L +Y L+ P+ V+ + Sbjct: 481 KGAKQISFADVAVEQAAEYAAQDADFALRLEAHLRAQMD-EKQLEMYLNLELPVAQVLFE 539 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME G+ ID+ L S+E+ LL LEE + +G+ FNL+SPKQL +ILF K+ P+ Sbjct: 540 MERNGVHIDRAELAAQSSELGAALLKLEEQAFQTAGQPFNLNSPKQLQEILFDKMGIPTK 599 Query: 643 A--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 KT +G T LEQ+ D P+ K ILE R L+K+KSTY D LP IN RT RVH Sbjct: 600 GLKKTASGGISTNEAVLEQL-APDYPLPKIILENRSLAKLKSTYTDKLPEMINPRTGRVH 658 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T YS A +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH Sbjct: 659 TTYSQAVAITGRLASSNPNLQNIPIRTAEGRRVRRAFTAPAGSLIVSADYSQIELRIMAH 718 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F+N D+HR AAE+FG+ E VSP+ RR+AKTINF +IYG+ + LA Sbjct: 719 LSGDKTLMAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKS 778 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I A ++I RYF R+PG+ EYI++TK GYVET+FGRR++ +I + ++ R Sbjct: 779 LGIDNLSAKNFIDRYFARYPGVAEYIQRTKEEAAAQGYVETLFGRRLYLPDIRAKNANAR 838 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ERAAINAP+QG+A+D+ +RAMI+V L L +K+++Q+HDELV EV E E+ T Sbjct: 839 AGAERAAINAPMQGTASDLIKRAMIAVSSRLHSDGLESKLIMQVHDELVLEVVENELETV 898 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ M + ++N VPL + V NW + Sbjct: 899 KEMLPQVMAEVAQGRLN--VPLLAEVGVGGNWDD 930 >gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] Length = 956 Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust. Identities = 344/1000 (34%), Positives = 557/1000 (55%), Gaps = 83/1000 (8%) Query: 4 ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + LFL+D + I+R +YA P ++ K G+ +AI GF N L+ +++ + + H Sbjct: 9 QKRLFLLDAYALIFRGYYALIKNPRVNSK--GMDTSAIMGFMNSLFDVIKREKPD----H 62 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV FD + R E+Y DYKANR + P+ + +P ++ +A +P IEI+G EADD+ Sbjct: 63 LAVAFDKGGSSDRVEMYEDYKANRDETPDAIKIAVPYIQSILKAMHVPCIEIEGVEADDL 122 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP----- 175 I T + AEKEG+ V +++ DKD QLVS +Y + + + I+ WGIP Sbjct: 123 IGTLSKQAEKEGYQVFMVTPDKDYAQLVSENIFMYKPAR-----MGNGIEIWGIPEVQKK 177 Query: 176 -----PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 PE+++ + GD+ DNIPG+PG+G KTA +++YG LE +L N ++K K + Sbjct: 178 FEVERPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIKQYGGLEGLLENTDKLK-GKMK 236 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 E ++ AE RLSRKL + D +T E+ L + + + LEF +L ++ Sbjct: 237 EKVIANAELGRLSRKLATIMLDCDVTFNAENYELSEPDAEAVAEIFDDLEFRRLKDQFVK 296 Query: 291 TYDCDA-ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQF------SSLSDQTSKINS 343 + +A A++ V + T + IET + Q+ S+++D + +S Sbjct: 297 IFSGEAEASVGAAVSNTETAKK----IETASKKAAQAGAGQYNLFDANSTIADDVEEASS 352 Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTK-DIQQWVQKLETIGSASFKIITDTMDAF 402 QT + Y + + ++ ++Q L S F T ++ Sbjct: 353 RQTIKS--------------KEHHYQSVATSGMGLKLFLQNLNKQTSVCFDTETTGLNPL 398 Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462 ++ + IA S K ++ S + + ++++ L+ FFENE Sbjct: 399 TAELVGIAFSWDAGK--------GFYLPFSDNKEE--------AQQLIEELRPFFENEDI 442 Query: 463 LKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----R 517 K+G N+KYD VLH+Y I +RG D ML Y+++ H++ +A+ +L+Y+ Sbjct: 443 QKVGQNLKYDIKVLHKYDIEVRGPLFDTMLAHYLINPDMR-HNMDVLAETYLNYSPVSIE 501 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 I K K+ + + E+A+E++++ LQL +L +++ ++ P++ Sbjct: 502 TLIGKKGKNQKSMRDVPLEDQTEYAVEDADITLQLKEHFEKELGDANTQKLFDDIEIPLL 561 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 V++ ME+ GI +D+ L ++ +++ ++ +LE +IY +GE+FN+ SPKQLG+ILF KL Sbjct: 562 RVLAAMELEGINLDKAFLNNLAEDLNNDIATLEASIYKEAGEEFNIGSPKQLGEILFDKL 621 Query: 638 KF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 K KT+TGQ+ +TA+D+ D+ II+N+L++R L+K+KSTY D+LP + + Sbjct: 622 KLVEKPKKTRTGQY-STAEDVLSYLAADHTIIQNVLDYRGLAKLKSTYVDALPEQV-EED 679 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIE 754 RVHT Y TGRL+S PNLQNIPI+T+ G+++R+AF+ P + L++ADYSQIE Sbjct: 680 GRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFV-PKNEDYVLLAADYSQIE 738 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LRI+A +++ + + F+N DIH AA++F V I +V+ + R +AKT+NF IIYG+S Sbjct: 739 LRIIAALSEEDTMIEAFKNGEDIHASTAAKVFNVPINEVTREQRSNAKTVNFGIIYGVSA 798 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 F L+ Q + RSE+ D I Y+ +P + Y+ + R++GYV T+ GRR + +INS Sbjct: 799 FGLSNQTDLTRSESKDLIDTYYKTYPKLRNYMSNLVDDAREDGYVSTVLGRRRYLKDINS 858 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 +R ER A+NAPIQGSAADI + AMI++HK L + TKMLLQ+HDELVF+VP+ Sbjct: 859 SNGVVRGAAERNAVNAPIQGSAADIIKVAMINIHKKLAEGNFKTKMLLQVHDELVFDVPK 918 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+ ++ ME A L VPL V + V N+W E Sbjct: 919 NELEDIKTLVKTEMESAY----TLSVPLDVEVGVGNDWLE 954 >gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256] gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256] Length = 952 Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust. Identities = 356/983 (36%), Positives = 540/983 (54%), Gaps = 76/983 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A LS DG P A+ G NML +L R + + + AV+FD Sbjct: 29 LLLVDGSSYLYRAYHAMAQLSAP-DGAPTGALYGVLNMLRRL----RADYVHDYCAVVFD 83 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122 FR+E++PDYKA RP +P+ L PQ LP LVRL G P + I EADD+I Sbjct: 84 AKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVEADDVIG 139 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T +A + G+ V + + DKD+ QLV+ L +T+ E +DIE V +K+G+ P+++ Sbjct: 140 TLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDY 199 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD +DN+PG+ G KTA L+ YG+L ++ +A +K K EN+ L Sbjct: 200 LALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAGEVK-GKVGENLQAALPQLPL 258 Query: 243 SRKLVMLRTDV----PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 S LV ++TDV ++ LE L +L+ K F + A + +A N Sbjct: 259 SYDLVTIKTDVDLHAELSDGLESLRRTSPKWAQLVVDFKRWGFRTWLKE-AESRMHEAQN 317 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 + + + E +A+ET+ ++ + + P+KL Sbjct: 318 TD-LFGSEHIGEQAALAMETQPEKQPELAPA-----------------PEKL-------- 351 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 Y + + KL + T ++DA ++ + I+I+ Sbjct: 352 --------DYQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNAALVGISIA------ 397 Query: 419 DTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 F+ E ++I V S + + +++L LK EN KIG N+KYD+ V Sbjct: 398 ---FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFA 452 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI++ G D ML SY+++S H + ++++WL T + + I + Sbjct: 453 NYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGFADV 511 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 + Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G+QID+ Sbjct: 512 AIEQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDRA 570 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWK 651 L + SAE+ L+ LE+ Y ++G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 571 ELARQSAELGAELMKLEQEAYAVAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIS 630 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A +TG Sbjct: 631 TNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVAITG 689 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L F Sbjct: 690 RLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAF 749 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 +N D+HR AAE+FG+ E VS + RR+AKTINF +IYG+ + LA L I A + Sbjct: 750 QNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTF 809 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I RYF R+PG+ EY+++TK G+VET+FGRR++ +I + ++ R ERAAINAP Sbjct: 810 IDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAP 869 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG+A+D+ +RAMI V + L L +K+++Q+HDELV EVPE E+ + + M K Sbjct: 870 MQGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVPEAELDLVKEKLPQIMAKV 929 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 +N VPL + V NW+E Sbjct: 930 DEGMLN--VPLVAEVGVGMNWEE 950 >gi|330890984|gb|EGH23645.1| DNA polymerase I [Pseudomonas syringae pv. mori str. 301020] Length = 921 Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust. Identities = 351/989 (35%), Positives = 532/989 (53%), Gaps = 96/989 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P L+ GLP A+ G NML L R++ S FAV+FD Sbjct: 6 LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA LL Y LE + R K + E+ Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKKLYERLETVATLPIR-GAKTLAAKLEEHRA 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ I L+ L + + +L+ LEF I + D A Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E + ++ T E K A E ++ SQF + Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 W++KL +F ++ DA ++ + ++ + + + Sbjct: 326 ---------------------WLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQTHE 363 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-- 476 + ++ + +D+ +L LK E+ K+G + K+ +L Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414 Query: 477 ------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526 GI ++G D +L SYVLDS + HD S+ K+L++T +EI Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585 + D+I+ Q +A E +++ L+L + +L + L V ++ P++ V++ +E Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLHDIEMPLVPVLAGIER 534 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P +KT Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Y Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A+ Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F N LD+HR AAE+FGV +E V+ MRR AK INF +IYG+S F LA Q+ + R Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 ++ Y+ RYF R+PG+ +Y+E+T+ + G+VETIFGRR++ +IN+ S+R ER Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKTQSLRKGAER 834 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAP+QG+AADI ++AM++V+ LE+ L +++LQ+HDELV EV E+ + S+ I Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A L VPL V + V NNW E Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDE 919 >gi|289627990|ref|ZP_06460944.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646458|ref|ZP_06477801.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 2250] gi|330866583|gb|EGH01292.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 921 Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust. Identities = 349/989 (35%), Positives = 532/989 (53%), Gaps = 96/989 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P L+ GLP A+ G NML L R++ S FAV+FD Sbjct: 6 LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA + + Y LE + R K + E+ Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ I L+ L + + +L+ LEF I + D A Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E + ++ T E K A E ++ SQF + Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 W++KL +F ++ DA ++ + ++ + + + Sbjct: 326 ---------------------WLKKLNAAPLFTFVTQSNGTDAQRAQLVGLSFA-IQTHE 363 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-- 476 + ++ + +D+ +L LK E+ K+G + K+ +L Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPGKTKVGQHAKFAINLLAN 414 Query: 477 ------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526 GI ++G D +L SYVLDS + HD S+ K+L++T +EI Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585 + D+I+ Q +A E +++ L+L + +L + L V ++ P++ V++ +E Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIER 534 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P +KT Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Y Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A+ Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F N LD+HR AAE+FGV +E V+ MRR AK INF +IYG+S F LA Q+ + R Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 ++ Y+ RYF R+PG+ +Y+E+T+ + G+VETIFGRR++ +IN+ S+R ER Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAP+QG+AADI ++AM++V+ LE+ L +++LQ+HDELV EV E+ + S+ I Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A L VPL V + V NNW E Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDE 919 >gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145] gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145] Length = 924 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 340/987 (34%), Positives = 551/987 (55%), Gaps = 87/987 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN LVDGSS+++RAF+A P L+ G P A+ G NML LL+ + SH AV Sbjct: 7 ENPFILVDGSSYLFRAFHAPPHLTNSA-GEPTGAVYGVVNMLRSLLKRYKP----SHMAV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR++IY +YKA+RP +P+ L Q+ + +A G+P + ++G EADD+I T Sbjct: 62 VFDAKGKTFRSDIYDEYKAHRPPMPDDLRTQIEPLHAIVKAMGLPLLCVEGVEADDVIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +G I + DKD+ QLV+ L +T+ + +D VI+K+G+ P +++ Sbjct: 122 LAKQAGDKGRFTLISTGDKDMAQLVNDHVMLINTMTDTLLDESGVIEKFGVKPNQIIDYL 181 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GDS DNIPG+P +G KTA +LQ +++ I + + + + K + + E+ Sbjct: 182 ALMGDSSDNIPGLPKVGEKTAQAMLQGIPSIDKIYEDINAVTELGFRGAKSMPKKLEEFK 241 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +SR+L ++ DV + + L +E + +L + +EF + +N + T Sbjct: 242 DQLLMSRELATIKCDVELECAPDALTIEPADTDQLQTLYGKMEFRRWLNELLET------ 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 G A T + E +P + ++ Sbjct: 296 ---------------GAA----------------------TDQALGEASPAE------EQ 312 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Q+ +N D+Y + N +++ ++++L++ +F T +++ ++ + ++ S + Sbjct: 313 SEQFSVNRDAYKTLFNEEEVSDYIEQLKSAEVIAFDTETTSLNYMEAQLVGVSFSIAEG- 371 Query: 418 DDTSFKVETIFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 E ++I ++ D G K +L LK E+ K+G N+KYD + Sbjct: 372 -------EAVYIPVA----HDYVGVEKQVDRDWLLKVLKPLLEDSSIAKVGQNLKYDAHI 420 Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 L RYGI +RG + D ML SYV +S S HD+ +++ ++L++ +EI + + Sbjct: 421 LRRYGIKLRGIKNDTMLASYVFNSVGSRHDMDTLSLQYLNHKPIKFEEIAGKGAKQLTFN 480 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 +I +Q +A E++++ L+L +L K+ E+L V ++ P++ +++ ME G++ Sbjct: 481 QIELAQAAPYAAEDADITLRLHHILWDKVHQTGEQLASVLTDIEVPLVSILTDMEEYGVK 540 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 +D ++L + S EI+ L LE+ ++++GE+FNL SPKQL ILF KL+ P KT G Sbjct: 541 VDAEMLGKQSEEIANKLDELEQKAFEIAGEEFNLGSPKQLQQILFEKLELPVIKKTPKGA 600 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 +TA+++ Q D P+ IL+ R L+K+KSTY D LP IN T RVHT Y A Sbjct: 601 -PSTAEEVLQELAHDYPLPDVILQHRSLAKLKSTYTDKLPRMINPDTGRVHTSYQQAVAA 659 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S EPNLQNIPI+T G+++R+AF++ +++ DYSQIELRI+AH+++ L + Sbjct: 660 TGRLSSTEPNLQNIPIRTPEGRRVRQAFVAEEGFTVVAIDYSQIELRIMAHLSQDASLLR 719 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIHR A+E+FG ++E+V+ + RR AK +NF +IYG+S F L+ QL IPR EA Sbjct: 720 AFAQGQDIHRATASEVFGCSLEEVTDEQRRRAKAVNFGLIYGMSAFGLSRQLDIPRHEAQ 779 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 Y+ +YF RFPG+ EY+E T+ ++ GYV T+FGRR+ EI + + R ERAAIN Sbjct: 780 AYMDKYFERFPGVLEYMENTRETAKKQGYVSTLFGRRLPLPEIKASNGARRKAAERAAIN 839 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLAT--KMLLQIHDELVFEVPEEEITTASQIIVHS 947 AP+QG+AADI +RAMI V +++ + +ML+Q+HDELVFE+ E + ++ + Sbjct: 840 APMQGTAADIIKRAMIKVGDWIDEKGCQSDVRMLMQVHDELVFEIRTEHAESYAKALADV 899 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M +A +L VPL NW E Sbjct: 900 MGEAA----DLDVPLLAEYGFGANWDE 922 >gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3] gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3] Length = 922 Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust. Identities = 363/988 (36%), Positives = 535/988 (54%), Gaps = 92/988 (9%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRA+YA P L+ G A+ G NML LL SR + SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYQP--SHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRN++Y +YKA+RP +P+ L Q+ PL R+ +A G+P I I G EADD+I T Sbjct: 62 FDAKGKTFRNDLYEEYKAHRPPMPDDLRSQIEPLHRI-IRALGLPLISIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +E AV I + DKD+ QLV L +T+ + + E V K+G+ P++++ Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GD DNIPG+PG+G KTA +L G++ N+L ++ + K I++ A Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVTELGFRGAKTMAAKIIDNA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +LS +L ++TDV + L + + LI +EF + + V D Sbjct: 241 DMLKLSYELATIKTDVELEQDWHELTAKPADRDELIKCYGEMEFKRWLAEV-----LDNK 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 V TTE + E TI+T Sbjct: 296 APATVAAKAETTET-----QEESAPSVTIETQ---------------------------- 322 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I+ + +W+ KL+ + T ++D ++ + + Sbjct: 323 ----------YDTILTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAELVGL-------- 364 Query: 418 DDTSFKVET---IFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKYD 472 SF VE ++ L+ D G L K+ L L+ E+ K+G N+KYD Sbjct: 365 ---SFAVEAGKAAYLPLA----HDYVGAPQQLDKQTALEKLRPLLEDAKIKKVGQNLKYD 417 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 VL GI ++G D ML SYV +S S HD+ +A K+L + ++I + Sbjct: 418 ISVLANAGIKLQGVVFDTMLESYVFNSIASRHDMDGLALKYLGHKNIAFEDIAGKGAKQL 477 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587 ++I +A E++++ L+L L P+L E +L V+ ++ P+I ++S +E G Sbjct: 478 TFNQIPLETAAPYAAEDADITLRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQG 537 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + ID LL Q S E+++ + LE YD++GEKFNLSSPKQL + F KL +P KT Sbjct: 538 VFIDSMLLGQQSDELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPK 597 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + L ++ D P+ K ILE R L+K+KSTY D LP +N +T RVHT Y A+ Sbjct: 598 GAPSTAEEVLVELAL-DFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQAN 656 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 TGRL+S EPNLQNIPI+T+ G++IR+AFI+P +K+++ADYSQIELRI+AH+++ L Sbjct: 657 AATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGL 716 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F DIHR AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL IPR+E Sbjct: 717 LKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNE 776 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A YI YF R+PG+ Y+E+T+ + GYV T+FGRR++ EI + R ERAA Sbjct: 777 AQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAA 836 Query: 888 INAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 INAP+QG+AADI ++AMIS+ ++ D + M++Q+HDELVFEV ++ T + Sbjct: 837 INAPMQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKLKVCE 896 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 M KA NL V L + +NW + Sbjct: 897 LMAKAA----NLDVELLAEAGIGDNWDQ 920 >gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8] gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8] Length = 905 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 347/973 (35%), Positives = 540/973 (55%), Gaps = 79/973 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R G P A+ G NML KL+ + + E + A IFD Sbjct: 5 LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVSDHKAE----YAACIFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++YP+YK++RP +PE L Q+ + A +A G P + I+G EADD+I T Sbjct: 60 ARGKTFRDDLYPEYKSHRPPMPEDLAAQIEPIHSAVRALGWPVLAIEGVEADDVIGTLAK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + + + DKDL QLV+ L +T+ E +D V+ K+G+PP+++V L Sbjct: 120 RAAEHDVYTIVSTGDKDLAQLVNSHVTLVNTMTGEVLDEAGVVNKFGVPPDRIVDYLMLV 179 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ +G KTA L E+G+++ ++ A IK N+ E L+R+L Sbjct: 180 GDAVDNVPGVTKVGPKTAVKWLTEFGSIDKLVEGAEDIKGVAG-SNLREAIPNFPLTRQL 238 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + ++ YDCD A V D+ Sbjct: 239 LTVK-----------------------------------------YDCDLAGHVDAVDDL 257 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 T + A TE+ +T L D T ++E+ P + P+ D Sbjct: 258 -TPRPRDEATLTELYERYGFRTW----LRDLTG--DAERVPAG-DARVAHEAPAAPVELD 309 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y + + W++KL+ + T ++D ++ + ++++ S V Sbjct: 310 -YQILSDWAAFDAWMEKLKDAPLVAVDTETTSLDEMQARMVGMSLAV-------SPGV-A 360 Query: 427 IFIDLSVHTSQDSTGKNTLTK-EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 +I ++ H D+ + L K E+L+ LK + E+ K+ H+ KYD V GI + G Sbjct: 361 CYIPVA-HRGPDNAPQ--LPKAEVLARLKPWLEDATRAKLLHHAKYDAHVFANEGIKLAG 417 Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEH 541 ED ML +YVL+S R + +AQ++L + +++ I D+++ + + Sbjct: 418 ITEDTMLQAYVLESHRGV-GLNDLAQRYLGRSGVSYEDLCGKGAKQIGFDEVAVDKAGHY 476 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 A E+S+ LQL +LRP + ++ L+ L+ + +V++ +E G+++D L + S + Sbjct: 477 AAEDSDFTLQLHQVLRPMVAADEGLNRIYLLEMQVSEVLTTVERNGVKVDAAELGRQSHK 536 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + + +L LE+ Y+L+G+ FNL+SPKQLG+ILF +++ P KT +G T + L ++ Sbjct: 537 LGQEMLQLEQKAYELAGQPFNLNSPKQLGEILFGRMQLPVVRKTASGAPSTDEEVLSKL- 595 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ + +LE+R LSK+KSTY D LP IN T RVHT YS A+ +TGRLAS +PNLQ Sbjct: 596 AQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPNTGRVHTHYSQAAVITGRLASSDPNLQ 655 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T+ G+++R AFI+ L+SADYSQIELRI+AH++ L + FE DIHR Sbjct: 656 NIPVRTEAGRRVREAFIAE-QGMLLSADYSQIELRIMAHVSDDANLQRAFEAGEDIHRAT 714 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A+E+FGV++E VS + RR AK INF +IYG+ F LA+ L I R A YI RYF R+PG Sbjct: 715 ASEVFGVSLEDVSTEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFARYPG 774 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y++ T+ R+ GYVET+FGRR+ EI R ERAAINAP+QG+AAD+ + Sbjct: 775 VAMYMDDTRRRAREQGYVETVFGRRLQLPEIRGASGPRRQGAERAAINAPMQGTAADLIK 834 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI+V LE KL T+M++Q+HDELV E P+ E+ +++ ++ + LRVP Sbjct: 835 MAMIAVQDWLEAEKLQTRMIMQVHDELVLEAPDAEL----ELVKEALPRLMCNVATLRVP 890 Query: 962 LKVNIKVSNNWQE 974 L + + NW++ Sbjct: 891 LVAEVGMGKNWEQ 903 >gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] Length = 930 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 358/986 (36%), Positives = 543/986 (55%), Gaps = 82/986 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A L+ DG P A+ G NML +L R + + + V+FD Sbjct: 7 LLLVDGSSYLYRAYHAMAQLTAP-DGAPTGALYGVLNMLRRL----RSDYVHDYCVVVFD 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122 FR+E++PDYKA RP +P+ L PQ LP LVRL G P + I EADD+I Sbjct: 62 AKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVEADDVIG 117 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T +A + G+ V + + DKD+ QLV+ L +T+ E +DIE V +K+G+ P+++ Sbjct: 118 TLAKMASEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDY 177 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD +DN+PG+ G KTA L+ YG+L ++ +A+ IK K EN+ L Sbjct: 178 LALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIK-GKVGENLQAALPQLPL 236 Query: 243 SRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLINRVATTYDCDA 296 S LV ++TDV + H L D P+ A++F + R T+ +A Sbjct: 237 SYDLVTIKTDVDL-----HTELSDGLESLRRTSPKWSQL--AVDFKRWGFR---TWLKEA 286 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL-ERL 355 + D + + I + +D +T+ SE+ P+K E+L Sbjct: 287 ESRMHEAADGDLFGSDTIGEQAALDMETS-----------------SERLPEKAVAPEKL 329 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 Y + + KL + T ++DA + + I+I+ Sbjct: 330 -----------DYQAVTTEAQFAALLDKLSQADTIGIDTETTSLDAMDASLVGISIA--- 375 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK EN KIG N+KYD+ Sbjct: 376 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPVLKKIGQNLKYDQH 427 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 428 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 486 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G+QI Sbjct: 487 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 545 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y + + FNL+SPKQL +ILF K+ P+ KT G Sbjct: 546 DRAELARQSAELGAELMKLEQEAYAAASQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 605 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 606 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 664 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 665 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 724 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG+ E VSP+ RR+AKTINF +IYG+ + LA L I A Sbjct: 725 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 784 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK G+VET+FGRR++ +I + ++ R ERAAI Sbjct: 785 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAI 844 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI V + L L +K+++Q+HDELV EVPE E+ + + M Sbjct: 845 NAPMQGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVPEAELDLVKEKLPQIM 904 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 K + + L+VPL + V NW+E Sbjct: 905 AK--VDEGMLKVPLVAEVGVGENWEE 928 >gi|330986810|gb|EGH84913.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M301315] Length = 921 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 348/989 (35%), Positives = 532/989 (53%), Gaps = 96/989 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P L+ GLP A+ G NML L R++ S FAV+FD Sbjct: 6 LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA + + Y LE + R K + E+ Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ I L+ L + + +L+ LEF I + D A Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E + ++ T E K A E ++ SQF + Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 W++KL +F ++ DA ++ + ++ + + + Sbjct: 326 ---------------------WLKKLNAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQTHE 363 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-- 476 + ++ + +D+ +L LK E+ K+G + K+ +L Sbjct: 364 AAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINLLAN 414 Query: 477 ------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526 GI ++G D +L SYVLDS + HD S+ K+L++T +EI Sbjct: 415 CALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAK 474 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585 + D+I+ Q +A E +++ L+L + +L + L V ++ P++ V++ +E Sbjct: 475 QLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLAGIER 534 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P +KT Sbjct: 535 QGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKT 594 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Y Sbjct: 595 ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 654 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A+ Sbjct: 655 AVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDE 714 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F N LD+HR AAE+FGV ++ V+ MRR AK INF +IYG+S F LA Q+ + R Sbjct: 715 GLLHAFRNDLDVHRATAAEVFGVELDNVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDR 774 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 ++ Y+ RYF R+PG+ +Y+E+T+ + G+VETIFGRR++ +IN+ S+R ER Sbjct: 775 KQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAER 834 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAP+QG+AADI ++AM++V+ LE+ L +++LQ+HDELV EV E+ + S+ I Sbjct: 835 MAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIR 894 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A L VPL V + V NNW E Sbjct: 895 PHMSGAA----ELAVPLLVEVGVGNNWDE 919 >gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666] gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666] Length = 944 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 351/977 (35%), Positives = 536/977 (54%), Gaps = 55/977 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R + G P + G + ++Q RK+ A + A +FD Sbjct: 8 LLLVDGSSYLYRAFHAMPDL-RANPGDPTSPATGAIRGMINMMQKLRKDVRADYAACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +YP YKA R +P+ L Q+ + + G +++ G EADD+I T Sbjct: 67 AKGPTFRDALYPQYKAQRSPMPDDLRSQVEPIHEVVRLLGWKVLDVPGVEADDVIGTLAC 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +A K+G V I S DKDL QLV + DT+ + + D+ V ++G+PP MV QAL Sbjct: 127 LASKQGIEVIISSGDKDLSQLVDENITVIDTMNDRRRDLAGVEAEFGVPPRLMVDYQALV 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+P +G KTA L EYG+L+ ++ A IK +N+ + R+L Sbjct: 187 GDAVDNVPGVPKVGPKTAVKWLLEYGSLDALVARAGEIKGVVG-DNLRLSLDWLPKGREL 245 Query: 247 VMLRTDVPI-----TIP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 + ++ D + +P LE + + L +F + F L+ ++ D ++A E Sbjct: 246 LTIKKDCDLIGYIDGLPALESIAIGGQQTDALKAFYEKYGFKGLVRQI----DTESAPPE 301 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 I E + + + +S L D+ S P R L Sbjct: 302 L----IGGPEGRHAKSPGSV---GSAGSSASPGLFDEPS------LPDAPLAGRASNLK- 347 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 Y I + + W+ K+E + T ++D ++ + I+ S Sbjct: 348 -------YDTIFTWELLDSWLAKIEAAELVAVDTETTSLDEMLAQIVGISFSVTPG---- 396 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 E +I L+ H D+ + E+L+ LK + EN K+G ++KYD+ V +G Sbjct: 397 ----EAAYIPLT-HDYPDAPAQ-LPRDEVLARLKPWLENPAIAKLGQHVKYDRHVFANHG 450 Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536 I ++G+ D ML SYVL+ H +AS+A++ + + +++ I +++ + Sbjct: 451 IEVQGYAHDTMLQSYVLEV-HKPHGLASLAERHVGRSGINYEDLCGKGVHQIKFNQVDIA 509 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + E++ E+S+ L + +L P++ +KL VYE L+ + + ++E G+ ID L Sbjct: 510 KAAEYSCEDSDQTLDVHRVLWPQIEANDKLRFVYE-LEMKSSETLYRIERNGVLIDAPTL 568 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 + S E+ ++ LE ++L+G+ FNL SPKQ+G+I FTKL P KT +G T + Sbjct: 569 AKQSGELGARIVQLEAEAHELAGQPFNLGSPKQIGEIFFTKLGLPVVKKTPSGAPSTDEE 628 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ D P+ ILE R LSK+K TY D L + RT RVHT Y+ A +TGRL+S Sbjct: 629 VLEKL-AEDYPLPAKILEHRGLSKLKGTYTDKLAQLAHPRTGRVHTHYAQAVAVTGRLSS 687 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP+KT G+++R AF++P + SADYSQIELRI+AH+++ L + F L Sbjct: 688 NDPNLQNIPVKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHLSEDEALLRAFTEGL 747 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+HR AAE+FGV +++VS + RR+AK INF +IYG+S F LA L I AA YI RY Sbjct: 748 DVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIETKAAAAYIDRY 807 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PG+ Y+++T+ + GYVET+FGRR++ EINSP R ERAAINAP+QG+ Sbjct: 808 FQRYPGVKHYMDETRLSAKSKGYVETVFGRRLYLPEINSPNGPRRGGAERAAINAPMQGT 867 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD+ + +M+ V + L+ K ATKM++Q+HDELVFEVPE E+ I M Sbjct: 868 AADLIKLSMVKVQEVLDAEKRATKMIMQVHDELVFEVPEAEVEWVRVEIPRIMAGVA--- 924 Query: 956 INLRVPLKVNIKVSNNW 972 +LRVPL I V NW Sbjct: 925 -DLRVPLLAEIGVGPNW 940 >gi|325108005|ref|YP_004269073.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305] gi|324968273|gb|ADY59051.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305] Length = 932 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 338/981 (34%), Positives = 548/981 (55%), Gaps = 72/981 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+D S +++ ++A P ++ G P NA+ GF + +L+ + + + D Sbjct: 5 LYLIDTFSLLFQVYHAIPPMTGPS-GQPTNAVFGFTRDILMILKQKKPD----YLLCALD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 R++ YP+YK R ++PE ++PQLP++ +AFGIPA++ G+EADD+IAT Sbjct: 60 SEGPGLRSDWYPEYKIQRTEMPEDMVPQLPMLTEVIEAFGIPAVKHAGWEADDVIATLAR 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE G V I+S+DKD QL+S T +++ K E + K WG+ P++++ Q+L Sbjct: 120 QAEAAGLQVNIVSSDKDCRQLLSETVRMFNCRKGEYFGPPELEKTWGVRPDQVIDFQSLV 179 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DN+PG+P +G K AA LL+++G+L+++L NA + KK REN++E+A+ AR+S++L Sbjct: 180 GDSVDNVPGVPLVGPKKAAALLEQFGDLDSVLANADKAPGKKLRENLVEFADQARVSKRL 239 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 V L TD+P+ LE A + D ++ + LD Sbjct: 240 VTLNTDLPLNFDLES---------------------------ARVGNIDVGKLQQLFLDY 272 Query: 307 NTTENKGIAIETEIDRDTTI----KTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + + E+D D T+ ++ Q S TS S+ Q +++ + P Sbjct: 273 GFRKFRDDL--HELDGDLTVNIPMRSGQRSLFDSPTSNTGSKAGNQT-DTPAVEESTPAP 329 Query: 363 INNDSYTKIVNTKD-----IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 D I+ D + W++ E I + T ++ A + + A++ K Sbjct: 330 FQTDRDWSIIRETDELQALVDGWMKDCEEI---YIDLETTSVTAMEADIVGWAVAA---K 383 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 +F + + G+ T+ +E+L + EN NIKYD LV Sbjct: 384 PGEAFYIPV----------RGPAGQQTMDNQEVLDIFRPLLENPRIAISNQNIKYDLLVW 433 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 R+GI ++ D M+ Y+LD+G SH ++S+A ++L + E++ + K+ +D+ Sbjct: 434 KRHGIELQKIGMDPMVGHYLLDAGARSHGLSSLADEFLKHRMIPISELIGTGKNQKRMDE 493 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 I QV E+A E+++ LQ+ ++R KL ++L ++Y+ +++P+I V+++ME GI++D Sbjct: 494 IDIDQVAEYASEDADAALQIADIIRDKLHEQELWNLYQDVERPLIGVLAEMEFAGIRVDD 553 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 + L + S + + + L E + ++ FN SPKQL ++LF ++ P +TKTG + Sbjct: 554 EELFRQSELVGRRVEELLEELEGMADRPFNPDSPKQLREVLFDEIGLPVQKRTKTG--PS 611 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 T Q + + +P+ I+E+RQL+K+K TY DSLP IN++T R+H ++ TGR Sbjct: 612 TDQSVLEKLAPLHPLPAKIIEYRQLAKLKGTYLDSLPKLINQQTGRIHASFNQVVAATGR 671 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 L+S +PNLQNIPI+T G+++R+AFI P +L+ DYSQIELR+LAH + L + F Sbjct: 672 LSSSDPNLQNIPIRTPEGRQVRKAFIPGEPGWELLCCDYSQIELRVLAHFSGDAALQEAF 731 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ DIH VAAE+F V+ V MRR AK +NF +IYG SP+ LA L IP+ +AA++ Sbjct: 732 QSGKDIHTAVAAEVFEVDEANVDSDMRRVAKAVNFGVIYGQSPYGLAAALNIPQEQAAEF 791 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I YF R+PG+ ++IE+T ++GY T+ GRR I + RN+ ER AIN Sbjct: 792 IDDYFMRYPGVSQFIEETLEQCARSGYAYTMLGRRRPITGIKNTGGRNRNMPERTAINTV 851 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGSAAD+ + AM++VH+ L L+ +MLLQIHDELVFE P EE+ +++ M A Sbjct: 852 IQGSAADLIKLAMLNVHRELATSGLSARMLLQIHDELVFETPVEELEPLRELVHREMVNA 911 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 L VPL V++K NW Sbjct: 912 H----PLSVPLVVDMKHGENW 928 >gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] Length = 918 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 354/978 (36%), Positives = 540/978 (55%), Gaps = 76/978 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRA+YA P L+ G A+ G NML LL SR SH AV+ Sbjct: 7 NPLILVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYSP--SHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRN++Y +YKA RP +P+ L Q+ PL R+ A G+P I I G EADD+I T Sbjct: 62 FDAKGKTFRNDMYGEYKAQRPPMPDDLRNQIEPLHRI-IHAMGLPLISISGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A KEG A I + DKD+ QLV+ L +T+ + + E V K+G+ P++++ Sbjct: 121 IALQASKEGRATLISTGDKDMAQLVNEHVTLINTMTDTIMGPEEVKTKYGVGPDRIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD DNIPG+PG+G KTA +L G++ENIL + + + R + Sbjct: 181 ALMGDKSDNIPGLPGVGEKTALAMLLGMGSVENILADPQSVVEVGFRGSK---------- 230 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 T+P + I+E+ + +L + E + V D ++P Sbjct: 231 ------------TMPAK--IIENADMLKL-----SYELATIKTDVELAQDWHQMTVKPQ- 270 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK-LFLERLQKLSQYP 362 DRD IK+ +++ + P+ + + +++ P Sbjct: 271 -----------------DRDELIKSFGEMEFKRWLAEVLDNKQPRGTISQDSEEEVIVSP 313 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 Y I+ + + +W++KL + + T +++ ++ + ++ +T + Sbjct: 314 TIEAEYETILTMEALDKWIEKLNSAELIAIDTETTSLNYMEAELVGLSFAT-EAGKAAYL 372 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 + ++D + + S L L+ E + K+G N+KYD +L GIS Sbjct: 373 PLAHDYLDAPLQIDKASA---------LEKLRPILEGDTPQKVGQNLKYDMSILANAGIS 423 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 ++G D ML SYV +S S HD+ +A K+L + + +E+ + +++ Sbjct: 424 LKGIRFDTMLESYVFNSIASRHDMDGLALKYLGHKNISFEEVAGKGAKQLTFNQVHLDIA 483 Query: 539 QEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ L+L L P+L E +L V+ L+ P+I V+S +E G+ ID LL Q Sbjct: 484 GPYAAEDADITLRLHQHLWPRLEKEPELASVFNELELPLIKVLSDVERQGVLIDSMLLSQ 543 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E++K L LE Y+++ EKFNL+SPKQL + F KL +P KT G +TA+D+ Sbjct: 544 QSGELAKKLDDLENKAYEIAEEKFNLASPKQLQTLFFEKLGYPIKKKTPKGA-PSTAEDV 602 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 D P+ K ILE R L+K+KSTY D LP +N T RVHT Y A+ TGRL+S E Sbjct: 603 LIELALDYPLPKVILEHRSLAKLKSTYTDKLPLMVNATTGRVHTSYHQANAATGRLSSSE 662 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+T+ G++IR+AFI+P +K+++ADYSQIELRI+AH+++ L F DI Sbjct: 663 PNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLTAFAEGKDI 722 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H+ AAE+FGV+ E+V+ + RR AK +NF +IYG+S F LA QL IPR+EA YI YF Sbjct: 723 HKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRNEAQKYIDTYFA 782 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ +Y+E+T+ + GYV T+FGRR++ EIN + R ERAAINAP+QG+AA Sbjct: 783 RYPGVLKYMEETRAIAAELGYVSTLFGRRLYLPEINDRNAMRRQAAERAAINAPMQGTAA 842 Query: 898 DITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 DI ++AMI++H+ + +D + +++Q+HDELVFEV E + T + M +A Sbjct: 843 DIIKKAMIAIHQWINQDTQGEITLIMQVHDELVFEVDEAQAETLKTKVCDLMAQAA---- 898 Query: 957 NLRVPLKVNIKVSNNWQE 974 +L V L + +NW E Sbjct: 899 SLDVTLLAEAGIGDNWDE 916 >gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1] gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1] Length = 917 Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust. Identities = 359/977 (36%), Positives = 527/977 (53%), Gaps = 82/977 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVRAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++++ DYKANRP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLFVDYKANRPSMPPDLALQIEPIHEAVRALGWPLLMIEGVEADDVIGTLAR 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE G V I + DKDL QLV+ L +T+ E +D E VI K+G+PPE++V +L Sbjct: 127 AAEARGMKVVISTGDKDLAQLVTSHVTLVNTMTNELLDREGVIAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y L+ I+ +A+ IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYETLDGIVEHAAEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRTDVPITIPLEHLILEDCNGPR----LISFLKALEFTKLINRVATTYDCDAANIEPV 302 V + T + +E + G L+ + F + + AA P Sbjct: 246 VTVETACELKPQVESIEASLATGAESRAALLPIFETYGFKTWRRELDAMPEDGAAAAAPE 305 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 +D + EI+R+ E +Q +Q+ Sbjct: 306 GIDP-------VPAAAEIERN----------------------------YETVQTWAQF- 329 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 W+ K++ SF T ++D ++ + +++ T Sbjct: 330 ---------------DAWLAKIDAAALTSFDTETTSLDPMVAQIVGLSLCTEPGS----- 369 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 ++ ++ H D+ + E+L+ LK + EN K+G ++KYD VL Y I+ Sbjct: 370 ---AAYVPVA-HRGPDAP-EQLPRDEVLAKLKPWLENPARKKVGQHLKYDAQVLANYDIA 424 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538 + G E D +L SYVL+S R +HD+ S+A + L +++ I D+++ Sbjct: 425 LNGVEHDTLLESYVLESHR-THDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVALDVA 483 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ LQL ++ P++ E L VY ++ P+ V+ +ME TG+ ID L+ Sbjct: 484 AAYAAEDADITLQLHRVMYPQVEREAGLKRVYTEIELPVSFVLRKMERTGVLIDSGRLEA 543 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S EI+ L+ LE Y L+G +FNL SPKQ+G I F KL+ P KT +G T + L Sbjct: 544 QSREIAVRLVELEREAYALAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVL 603 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 +++ D P+ K +LE R LSK+KSTY D LP IN T RVHT Y+ A +TGRLAS + Sbjct: 604 QKL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMINASTGRVHTNYAQAVAVTGRLASND 662 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIP++T G++IR AFI+ P K++SADYSQIELRI+AHI+ L + F DI Sbjct: 663 PNLQNIPVRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISGDESLLRAFSQGEDI 722 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FGV +VS RR AK INF +IYG+S F LA+ L I R A YI RYF Sbjct: 723 HRATAAEVFGVTPLEVSTDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFA 782 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ Y+E T+ + GYVET+FGRR+ EIN R ERAAINAP+QG+AA Sbjct: 783 RYPGVANYMETTRASAKAQGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAA 842 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 D+ + +MI+V LE L ++M++Q+HDELV EVP+ E+ + + M Sbjct: 843 DLIKLSMIAVDGWLERDGLRSRMIMQVHDELVLEVPDAELALVREKLPEMMSGVA----K 898 Query: 958 LRVPLKVNIKVSNNWQE 974 L+VPL + NW+E Sbjct: 899 LKVPLVAEVGAGTNWEE 915 >gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B] gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B] Length = 921 Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust. Identities = 358/988 (36%), Positives = 558/988 (56%), Gaps = 91/988 (9%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA P ++ K G+ +AI GF N L +L K +H AV Sbjct: 3 LFLIDAYALIYRSYYAFIKNPRINSK--GVNTSAIFGFINSLEDVL----KRENPTHIAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E + YKA R + PE++ +P+++ +A+ IP +E+ +EADD+I T Sbjct: 57 AFDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGIPP-EKM 179 + AEKEGF V +++ DKD QLVS +Y E I + V+ K+G+ E++ Sbjct: 117 VSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIIGVPEVLNKYGLTSTEQV 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYA 237 + L L GD+ DNIPG PG+G KTA LL E+G++EN+L N ++K QKK+ E E A Sbjct: 177 IDLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGAQKKKVE---ENA 233 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E R S+ L ++TDVPI + E N RL LEF IN++++ AA Sbjct: 234 EQIRFSKFLATIKTDVPIEFDAARCVREKPNEERLTEIYTELEFRTFINKLSSE-PVKAA 292 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL----E 353 PV D+ AI T + + + S L+D S TP +L E Sbjct: 293 PKGPVQGDL-------FAIFT----PESTEEPEKSILTDLKS------TPHNYYLTDTEE 335 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 + L+++ + + + +F TD +D + + ++ + Sbjct: 336 KQADLARFLLGQEFF----------------------AFDTETDGIDPLKAGLVGMSFAV 373 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 + E ++ + ++ + + +++ +N LKIG NIK+D Sbjct: 374 KEN--------EAWYVPVPANSVEAA--------KVVERFSPALQNPKSLKIGQNIKFDI 417 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528 LVL +Y + + G D M+ Y+L+ H + +A+ +L Y +E++ + K+ + Sbjct: 418 LVLRKYNVKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQL 476 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + + Q+ E+A E++++ L+L P+L E L ++ ++ P+I V+++ME TG+ Sbjct: 477 SMRNVPVEQIAEYAAEDADITLKLKNYFAPELKKEGLESLFTTIEMPLIYVLAEMEATGV 536 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647 +D L+Q S E++ ++ LE+ +Y+L+G +FN++S KQ+G+ILF +LK AK TKT Sbjct: 537 TLDTVALRQSSGELTASMNKLEQEVYELAGTEFNINSTKQVGEILFDRLKLDEKAKKTKT 596 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G + T+ LE++ +PII +LE+R L K+ STY D+LP IN +T ++HT ++ A Sbjct: 597 GGYSTSEDVLEKLR-NKHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV 655 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITP 766 T TGRL+S PNLQNIP++ DLG++IR+AFI T L SADYSQIELRI+AH++ Sbjct: 656 TSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPH 715 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 + + F++ DIH AA+I+G+ +E+V+ MRR AKT NF IIYGIS F LA +L IPRS Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRS 775 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 E+ + I YF +P I EY+E++ ++ GYVETIF R+ +INS + +R ER Sbjct: 776 ESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAERN 835 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAPIQGSAADI + AM+ +++ E+ L +KM+LQ+HDEL F V +EE +I++ Sbjct: 836 AINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAEEVKKIVLE 895 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME + L+VPL + NW E Sbjct: 896 EMENV----MKLQVPLIADCGEGENWLE 919 >gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] Length = 935 Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust. Identities = 356/991 (35%), Positives = 542/991 (54%), Gaps = 86/991 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E+Y +YKANRP +P+ + Q+ + + A G P + ++G EADD+I T Sbjct: 61 AKGGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D++ V +K+G+ PE+++ AL Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMSGSSMDVDGVKEKFGVAPEQIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTA-ALLLQEYGNLENI-----LINASRIKQKKRRENILE-YAET 239 GDS DNIPG+PGIG KTA LL+ G L + ++ I+ K LE + E Sbjct: 181 GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLPIRGAKTLPAKLEEHKEM 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS +L ++ DVP+ I L+ L + + +L LEF +N Sbjct: 241 AFLSYQLATIKVDVPLDIGLDDLQMGPEDPAKLYELYTLLEFKSWLN------------- 287 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK-LFLERLQKL 358 ++DRD K + S+ +E P LF ++ Sbjct: 288 -------------------DLDRDA--KRQELSA--------AAEPVPAGDLFSAPAEEE 318 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 + +Y I++ W++KL+ +F T +DA ++ + ++ + Q + Sbjct: 319 APAAPAEAAYETILDQARFDVWLEKLKNAKLFAFDTETTGIDAQQAQLVGLSFAV--QAN 376 Query: 419 DTSF-KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL- 476 + ++ + +I + +D+ +L LK E+ + LK+G + K+D +L Sbjct: 377 EAAYIPLTHSYIGVPEQLDRDT---------VLRALKPILEDPNKLKVGQHAKFDMNILA 427 Query: 477 -------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525 GI++RG D ML SYVL+S + HD+ S+AQK+L +T ++I Sbjct: 428 NCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHDMDSLAQKYLDHTTVSFQDIAGKGA 487 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQME 584 + D+I+ Q +A E+++V L+L L KL + L V ++ P++ V++++E Sbjct: 488 KQLTFDQIALEQAGPYAAEDADVTLRLHQTLFDKLSAIPSLASVLTDIEIPLVPVLARIE 547 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 G +D +LL S E+ +++LE ++++GE+FNL SPKQLG IL+ KL P K Sbjct: 548 RQGAFVDAELLGIQSIELGNKMIALEREAFEIAGEEFNLGSPKQLGVILYEKLGLPVLKK 607 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 T GQ T + L ++ D+ + K ++E R +SK+KSTY D LP IN RT R+HT Y Sbjct: 608 TAKGQPSTAEEVLAKLAEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYH 667 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 A TGRL+S +PNLQNIP++T G++IR+AF++P KL++ADYSQIELRI+AH+++ Sbjct: 668 QAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSRD 727 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L F N+LD+H AAE+F V + +V+ RR AK INF +IYG+ +L + + Sbjct: 728 EGLMNAFRNNLDVHTATAAEVFKVELNEVTSDQRRGAKAINFGLIYGMGAQKLGKDIGVD 787 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 A YI YF R+PG+ EY+++T+ G+VETIFGRR++ +INS K R E Sbjct: 788 TKTAKAYIDTYFARYPGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNKPQERAAAE 847 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA-SQI 943 R AINAP+QG+AADI ++AM++V L L K++LQ+HDELV EV E+ + +I Sbjct: 848 RTAINAPMQGTAADIIKKAMVAVDNWLCASGLDAKVILQVHDELVLEVREDLVDQVREEI 907 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 VH E A L VPL V + V NNW E Sbjct: 908 RVHMSEAA-----KLDVPLLVEVGVGNNWDE 933 >gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489] gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489] Length = 946 Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust. Identities = 351/986 (35%), Positives = 550/986 (55%), Gaps = 58/986 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFL+D + I+R +YA P ++ K GL +AI GF N L +++ R + Sbjct: 1 MADQKRLFLLDAYALIFRGYYAFIKNPRINSK--GLDTSAILGFTNSLLDVIKRERPD-- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 H AV FD R E++ YKANR PE + +P + +A IP + +G+EA Sbjct: 57 --HLAVCFDRGGSVDRVEMFEAYKANRDATPEAIKLAIPYIENILKAMHIPVVVKEGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV---KEEKIDIEHVIKKWGI 174 DDII T AEKE + V +++ DKD QLVS +Y + E I V+KK+ I Sbjct: 115 DDIIGTLAKKAEKENYKVFMVTPDKDFAQLVSENIFMYRPMFGGGYETWGIPEVLKKFEI 174 Query: 175 P-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 PE+++ + GDS+DNIPG+PG+G KTA L YG++EN+L N +K K +E I Sbjct: 175 ERPEQVIDYLGMMGDSVDNIPGLPGVGEKTAKKFLATYGSMENLLDNTHELK-GKMKEKI 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E LS+KL + DVP+ + L+ + P++ + LEF +L + + T+ Sbjct: 234 EANKELGLLSKKLARIMLDVPVDFNEKEYELDQPDLPKVTEIFEELEFRRLADNLIKTF- 292 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 A +K A + +T QFS S ++ Q Q+L Sbjct: 293 --ATETTTNSETNTEKSSKKTA------KTSTAGAGQFSLFGGGGSA-SATQVQQELSSR 343 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 + K + Y + ++ ++Q L S F T ++ ++ + IA S Sbjct: 344 KTSKDIPH-----IYQSVAPGMAMKLFLQNLMKQTSVCFDTETTGLNPLTAELVGIAFSW 398 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 K +I Q +E++ L+ FFE+E KIG N+KYD Sbjct: 399 EASK--------GFYIPFPEDQDQ--------AQELIEQLRPFFEDEKIEKIGQNLKYDI 442 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSI 528 VL +Y + ++G + D ML Y+++ H++ +A+ +L+YT + I K K+ + Sbjct: 443 KVLRKYNLIIKGAYFDTMLAHYLINPDMR-HNMDVLAETYLNYTPISITELIGKKGKNQL 501 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + ++ + E+A+E++++ QL +P+L K ++ ++ P++ V++ ME+ GI Sbjct: 502 SMRQVPIEKQTEYAVEDADITYQLASHFKPELKDAKTEELFNDIEIPLLSVLADMELEGI 561 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT 647 +D D L +S E++ ++ +LE +IY+ +GE+FN++SPKQLG+ILF KLK KTKT Sbjct: 562 NLDVDFLNSLSEELNTDIKNLETSIYEAAGEEFNIASPKQLGEILFGKLKLVDKPKKTKT 621 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQ+ +TA+D+ D+ IIKNILE+R L+K+KSTY D+LP+ + + T RVHT Y Sbjct: 622 GQY-STAEDVLSYLAQDHEIIKNILEYRGLAKLKSTYIDALPDQVEESTGRVHTDYMQTV 680 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITP 766 TGRL+S PNLQNIPI+T+ G+++R+AF+ L++ADYSQIELRI+A ++ T Sbjct: 681 AATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENYTLLAADYSQIELRIIAALSDETT 740 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 + + F+N DIH A+++F V +++V+ + R +AKT+NF IIYG+S F L+ Q + R Sbjct: 741 MIEAFKNGEDIHASTASKVFNVPLDQVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRG 800 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 E+ + I Y+ +P + +Y+ + +F R NGYV+T+ GRR + +INS + +R+ ER Sbjct: 801 ESKELIDAYYETYPKLKKYMSELVDFARDNGYVQTVLGRRRYLKDINSRNAVVRSAAERN 860 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 A+NAPIQGSAADI + AMI++HK L TKMLLQ+HDELVF+ + E+ +I Sbjct: 861 AVNAPIQGSAADIIKIAMINIHKKLTGGNFKTKMLLQVHDELVFDAHKTELEEVRALIKT 920 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972 ME A +L VPL V I +NW Sbjct: 921 EMENAY----SLAVPLDVEIGTGDNW 942 >gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust. Identities = 352/973 (36%), Positives = 542/973 (55%), Gaps = 60/973 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS +++RAF+A P L+ G NAI G + L KL++ + +H AVIFD Sbjct: 4 FILVDGSYYLFRAFHALPPLTTSQ-GQTTNAIKGALSALQKLMRRMQP----THMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+ + P+YKA+RP +P L Q+P + + GIP + + G EADD+I T Sbjct: 59 TPEPTFRHMLSPEYKAHRPAMPSELSTQIPYLHAIIKGLGIPLLLLPGAEADDLIGTLAC 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A +EG V I + DKD+ QLV+ L D+ +++ +D + VI K+G+ P++++ L Sbjct: 119 RAVREGHHVLISTGDKDMAQLVNDHIKLEDSFRDQVLDHDGVIAKFGVRPDQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G TAA LL +Y + IL NA IK K E+I E A+ L+ +L Sbjct: 179 GDASDGIAGVPGVGKVTAAKLLNQYQTIGGILENAHLIK-GKVGESIRENADKIPLNHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + D+P+ + L L + P L LEF L+ + + D EP Sbjct: 238 ASIVCDLPLELDWHELKLGKPDVPALKKLYAELEFRALLQSLEHPNNPDNQQQEP----- 292 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 K + E + +D + + S++++Q + PI+ Sbjct: 293 ----QKSYSFE-DTKKDDIPELLETSAVAEQPVAL--------------------PISEV 327 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I++ + V++L+ + F + T+T + + +S Q E Sbjct: 328 QYHTILDKAEFLALVERLKA--APRFAVDTETTSVDYRLARIVGVSFALQAS------EA 379 Query: 427 IFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 +I + D G + K +L LK EN KIG ++KYD V + +GIS+ Sbjct: 380 FYIPIG----HDYMGAPEQLDAKFVLDTLKPILENPAIGKIGQHMKYDAHVFNNHGISLA 435 Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQE 540 G+ D ML SYVL+ + H + +AQ +L YT ++I + ++I + Sbjct: 436 GWAFDTMLASYVLNPTATRHGMDDLAQYYLDYTTTTFEQIAGKGAKQLTFNQIELEKAAP 495 Query: 541 HAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++++ +L+ L + KL + ++ P V+ +ME GI++D L ++ Sbjct: 496 YAAEDADITWRLYEYFAQALAKIPKLEKLLLEIEMPAAQVLYEMENNGIRLDIPFLAELG 555 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 +L+LE + +L+G+ FN+SSPKQLG+ILF KL G KT +GQ+ T LE+ Sbjct: 556 QRFGAQILTLESHAIELAGQPFNVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEK 615 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 I D+PII ILE+R LSK+KSTY DSL + TQRVHT Y A T TGRL+S +PN Sbjct: 616 I---DHPIIATILEYRSLSKLKSTYTDSLIAQSDSETQRVHTSYHQAITATGRLSSTDPN 672 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPI+ ++G++IR+AFI+P + +++ADYSQIELR++AH ++ L + F + DIH+ Sbjct: 673 LQNIPIRGEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRDGRDIHQ 732 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAE+ G+ +E V+ RR AK INF ++YG+S F LA QL++ R+EA +YI YF R+ Sbjct: 733 ATAAEVMGIALEDVTSDQRRQAKAINFGLLYGMSAFGLAKQLKLSRAEAQEYITLYFSRY 792 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 P +H+Y+E T+ + GYVET+ GRR++ + I + + +R ERAAINAP+QGSAADI Sbjct: 793 PSVHDYMENTRALAAEQGYVETVLGRRLYMENIRAGNAMVRQAAERAAINAPLQGSAADI 852 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + AMISV ++L K KMLLQ+HDELVFEV E++ + ++ M + ++ Sbjct: 853 IKLAMISVDQALP--KEHAKMLLQVHDELVFEVDEDKADEVTALLKKLMPAVLQGRADIA 910 Query: 960 VPLKVNIKVSNNW 972 VPL++ + NW Sbjct: 911 VPLEIEVGRGVNW 923 >gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685] gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685] Length = 930 Score = 572 bits (1473), Expect = e-160, Method: Compositional matrix adjust. Identities = 359/982 (36%), Positives = 539/982 (54%), Gaps = 74/982 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A L+ DG P A+ G NML +L R + + + AV+FD Sbjct: 7 LLLVDGSSYLYRAYHAMAQLTAP-DGAPTGAMYGVLNMLRRL----RADYVHDYCAVVFD 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122 FR+E++PDYKA RP +P+ L PQ LP LVRL G P + I EADD+I Sbjct: 62 AKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVEADDVIG 117 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T +A + G+ V + + DKD+ QLV+ L +T+ E +DIE V +K+G+ P+++ Sbjct: 118 TLAKMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRPDQIRDY 177 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD +DN+PG+ G KTA L+ YG+L ++ +A+ IK K EN+ E L Sbjct: 178 LALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIK-GKVGENLQAALEQLPL 236 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLINRVATTYDCDAANI 299 S LV ++TDV + L +D R S A++F + R T+ +A + Sbjct: 237 SYNLVTIKTDVDLHTELS----DDLESLRRTSPKWSQLAVDFKRWGFR---TWLKEAESR 289 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 D + + I + +D +T+ ERL + + Sbjct: 290 MHEAADGDLFGSDTIGEQAALDMETSS--------------------------ERLHEKA 323 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 P D Y + + KL G T ++DA ++ + I+I+ Sbjct: 324 VAPEKLD-YQAVTTEAQFAALLDKLSRAGKIGIDTETTSLDAMNAALVGISIA------- 375 Query: 420 TSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 F+ E ++I V S + + +++L LK EN KIG N+KYD+ V Sbjct: 376 --FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQHVFAN 431 Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534 Y I++ G D ML SY+++S H + ++++WL T + + I ++ Sbjct: 432 YDIALNGIAGDSMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQISFADVA 490 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 Q E+ ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G+QID+ Sbjct: 491 IGQATEYTAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQIDRAE 549 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKT 652 L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G T Sbjct: 550 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 LEQ+ D + K IL+ R L+K+KSTY D LP I + RVHT Y+ A +TGR Sbjct: 610 NEAVLEQL-APDYALPKIILQNRSLAKLKSTYTDKLPEMIFPKDGRVHTTYAQAVAITGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 LAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L F+ Sbjct: 669 LASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 N D+HR AAE+FG+ E VSP+ RR+AKTINF +IYG+ + LA L I A +I Sbjct: 729 NGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTFI 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAAINAP+ Sbjct: 789 DRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNTNARAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+A+D+ +RAMI V + L+ L TK+++Q+HDELV EVP+ E+ + + M K Sbjct: 849 QGTASDLIKRAMIDVSRWLDLDGLKTKLIMQVHDELVLEVPKAELDLVKEKLPQIMAKVD 908 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 +N VPL + V NW+E Sbjct: 909 EGMLN--VPLVAEVGVGMNWEE 928 >gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454] gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 927 Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust. Identities = 348/976 (35%), Positives = 542/976 (55%), Gaps = 73/976 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R DG P A+ G NM+ +L R++ A + A +FD Sbjct: 15 LLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGLINMMRRL----RRDIPAEYSACVFD 69 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ Y DYKA+RP +PE L Q+ + +A +A G P + I+ EADD+I T Sbjct: 70 AKGKTFRDDWYADYKAHRPPMPEDLARQIEPIHVAVRALGWPLLMIERVEADDVIGTLAV 129 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + G V + + DKDL QLV+ L +T+ E++D + VI K+G+PPE++V L Sbjct: 130 RAAQAGMNVVVSTGDKDLAQLVNERVTLINTMTNERLDRDGVIAKFGVPPERIVDYLTLI 189 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y L+ I+ +A+ IK A L R L Sbjct: 190 GDTVDNVPGVDKCGPKTALKWLAQYQTLDGIIEHANDIKG----------AVGDNLRRAL 239 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 L T RL++ + + + +AT+ A + + DI Sbjct: 240 AFLPT-----------------ARRLVTVHTECDLSPQVQSIATSLQA-RAEAKDELRDI 281 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS---EQTPQKLFLERLQKLSQYPI 363 + E+D + T F++ +D + E P +ER Sbjct: 282 YLRHGFKTWLR-ELDSEAGPDT--FTATADGGVALGPGAVEPAPAT-DIER--------- 328 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 Y + + ++W+ +E SF T ++D ++ + ++ +T + Sbjct: 329 ---QYETVNAWEQFERWLAVIEAAPLTSFDTETTSLDPMRARIVGVSFATEPGR------ 379 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 ++ L+ H D E+L+ LK + E+ K+G ++KYD VL +GI++ Sbjct: 380 --AAYVPLA-HRGPDHP-VQLPRDEVLARLKPWLESPAHKKVGQHLKYDAQVLASHGITL 435 Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 G E D +L SYVL+S R HD+ ++A + L +++ + I D++S Sbjct: 436 AGIEHDTLLESYVLESHRP-HDMDNLATRHLGVKTIKYEDVAGKGAAQIGFDEVSVDVAT 494 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 E++ E++++ L+L +L P++ VEK L +VY ++ P V+ +E G+ ID+D L Sbjct: 495 EYSAEDADITLRLHQVLYPQIQVEKGLDYVYRSIELPTARVLQIIERNGVLIDKDRLVAQ 554 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S E+ +L L+ Y L+G +FNL+SPKQ+G+I F +L+ P KT +G +T +D+ Sbjct: 555 SNELGIRMLELQAEAYALAGGEFNLNSPKQIGEIFFQQLQLPVVKKTPSGA-PSTDEDVL 613 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 Q D P+ K +L++R L+K+KSTY D LP IN T RVHT Y+ A +TGRLAS +P Sbjct: 614 QKLAEDYPLPKVLLDYRALTKLKSTYTDKLPKMINPDTGRVHTNYAQAVAVTGRLASNDP 673 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIP++T G++IR AFI+PP ++SADYSQIELRI+AHI+ L FE+ D+H Sbjct: 674 NLQNIPVRTPEGRRIREAFIAPPGSSIVSADYSQIELRIMAHISGDASLMAAFEHGEDVH 733 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R A+EIFGV ++V+ + RR AK INF +IYG+S F LA+ L I R A YI RYF R Sbjct: 734 RATASEIFGVTRQEVTSEQRRIAKVINFGLIYGMSAFGLASNLGIARDAAKLYIDRYFAR 793 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ Y+++T+ + G+V+T+FGRR+ EIN R ERAAINAP+QG+AAD Sbjct: 794 YPGVARYMDETRMEAKSCGFVQTVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAAD 853 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 + + +MI+V +E ++ +++++Q+HDELV EVP++E+ +II + + L Sbjct: 854 LIKLSMITVQDWIERARVKSRLIMQVHDELVLEVPDDEL----EIIRAKVPELMCSVAQL 909 Query: 959 RVPLKVNIKVSNNWQE 974 VPL + NW+E Sbjct: 910 NVPLVAELGTGANWEE 925 >gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13] gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13] Length = 925 Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust. Identities = 360/994 (36%), Positives = 559/994 (56%), Gaps = 91/994 (9%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M K LFL+D + IYR++YA P ++ K G+ +AI GF N L +L K Sbjct: 1 MLKVMKLFLIDAYALIYRSYYAFIKNPRINSK--GVNTSAIFGFINSLEDVL----KREN 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AV FD TFR+E + YKA R + PE++ +P+++ +A+ IP +E+ +EA Sbjct: 55 PTHIAVAFDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGI 174 DD+I T + AEKEGF V +++ DKD QLVS +Y E + + V+ K+G+ Sbjct: 115 DDVIGTVSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIMGVPEVLNKYGL 174 Query: 175 PP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRE 231 E+++ L L GD+ DNIPG PG+G KTA LL E+G++EN+L N ++K QKK+ E Sbjct: 175 TSTEQVIDLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGAQKKKVE 234 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 E E R S+ L ++TDVPI + E N RL LEF IN++++ Sbjct: 235 ---ENVEQIRFSKFLATIKTDVPIGFDAARCVREKPNEERLTEIYTELEFRTFINKLSSE 291 Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351 AA PV D+ AI T + + + S L+D S TP + Sbjct: 292 -PVKAAPKGPVQGDL-------FAIFT----PESTEEPKKSILTDLKS------TPHNYY 333 Query: 352 L----ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 L E+ L+++ + + + +F TD +D + + Sbjct: 334 LTDTEEKQADLARFLLGQEFF----------------------AFDTETDGIDPLKAGLV 371 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 ++ + + E ++ + ++ + + +++ +N LKIG Sbjct: 372 GMSFAVKEN--------EAWYVPVPANSVEAA--------KVVERFSPALQNPKSLKIGQ 415 Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 NIK+D LVL +Y + + G D M+ Y+L+ H + +A+ +L Y +E++ Sbjct: 416 NIKFDILVLRKYNVKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGP 474 Query: 524 R-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + K+ + + + Q+ E+A E+++V L+L P+L E L ++ ++ P+I V+++ Sbjct: 475 KGKNQLSMRNVPVEQIAEYAAEDADVTLKLKNYFAPELKKEGLESLFTTIEMPLIYVLAE 534 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME TG+ +D LKQ S E++ ++ LE+ +Y+L+G +FN++S KQ+G+ILF +LK Sbjct: 535 MEATGVTLDTVALKQSSGELTASMNKLEQEVYELAGAEFNINSTKQVGEILFDRLKLDEK 594 Query: 643 AK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 AK TKTG + T+ LE++ +PII +LE+R L K+ STY D+LP IN +T ++HT Sbjct: 595 AKKTKTGGYSTSEDVLEKLR-NKHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHT 653 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760 ++ A T TGRL+S PNLQNIP++ DLG++IR+AFI T L SADYSQIELRI+AH Sbjct: 654 SFNQAVTSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAH 713 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ + + F++ DIH AA+I+G+ +E+V+ MRR AKT NF IIYGIS F LA + Sbjct: 714 LSGDPHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAER 773 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L IPRSE+ + I YF +P I EY+E++ ++ GYVETIF R+ +INS + +R Sbjct: 774 LGIPRSESKELIDGYFSTYPRIKEYMEESVKVAKEKGYVETIFKRKRFLPDINSHNAVVR 833 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER AINAPIQGSAADI + AM+ +++ E+ L +KM+LQ+HDEL F V +EE Sbjct: 834 GYAERNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAEVV 893 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I++ ME + L+VPL + NW E Sbjct: 894 KKIVLEEMENV----MKLQVPLIADCGEGENWLE 923 >gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4] gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4] Length = 922 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 358/988 (36%), Positives = 532/988 (53%), Gaps = 92/988 (9%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRA+YA P L+ G A+ G NML LL SR + SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYQP--SHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRN++Y +YKA+RP +P+ L Q+ PL R+ +A G+P I I G EADD+I T Sbjct: 62 FDAKGKTFRNDLYEEYKAHRPPMPDDLRSQIEPLHRI-IRALGLPLISIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +E AV I + DKD+ QLV L +T+ + + E V K+G+ P++++ Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GD DNIPG+PG+G KTA +L G++ N+L ++ + K I++ A Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVTELGFRGAKTMAAKIIDNA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +LS +L ++TDV + L + + LI +EF + + V A Sbjct: 241 DMLKLSYELATIKTDVELEQDWHELEAKPADRDELIKCYGEMEFKRWLAEVLDNKAPTTA 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + + + IET+ D Sbjct: 301 AAKVETTETQEETAPSVTIETQYD------------------------------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ + +W+ KL+ + T ++D ++ + + Sbjct: 325 ------------TILTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAELVGL-------- 364 Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKYD 472 SF VE ++ L + D G L K+ L L+ E+ K+G N+KYD Sbjct: 365 ---SFAVEAGKAAYLPL----AHDYVGAPQQLDKQTALEKLRPILEDAKLKKVGQNLKYD 417 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 VL GI ++G D ML SYV +S S HD+ +A K+L + ++I + Sbjct: 418 ISVLANAGIQLQGVVFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAFEDIAGKGAKQL 477 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITG 587 ++I +A E++++ L+L L P+L E +L V+ ++ P+I ++S +E G Sbjct: 478 TFNQIQLETAAPYAAEDADITLRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQG 537 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + ID LL Q S E+++ + LE YD++GEKFNLSSPKQL + F KL +P KT Sbjct: 538 VFIDSMLLGQQSDELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPK 597 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + L ++ D P+ K ILE R L+K+KSTY D LP +N +T RVHT Y A+ Sbjct: 598 GAPSTAEEVLVELAL-DFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQAN 656 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 TGRL+S EPNLQNIPI+T+ G++IR+AFI+P +K+++ADYSQIELRI+AH+++ L Sbjct: 657 AATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGL 716 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F DIHR AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL IPR+E Sbjct: 717 LKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNE 776 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A YI YF R+PG+ Y+E+T+ + GYV T+FGRR++ EI + R ERAA Sbjct: 777 AQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAA 836 Query: 888 INAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 INAP+QG+AADI ++AMIS+ ++ D + M++Q+HDELVFEV ++ T + Sbjct: 837 INAPMQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKLKVCE 896 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 M KA NL V L + +NW + Sbjct: 897 LMAKAA----NLDVELLAEAGIGDNWDQ 920 >gi|66043540|ref|YP_233381.1| DNA polymerase I [Pseudomonas syringae pv. syringae B728a] gi|63254247|gb|AAY35343.1| DNA polymerase A [Pseudomonas syringae pv. syringae B728a] Length = 921 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 348/992 (35%), Positives = 536/992 (54%), Gaps = 102/992 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L R++ S AV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA LL Y NL+ + R K + E+ E Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVASLPIR-GAKTLAAKLEEHRE 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ I L+ L C P Sbjct: 240 MAFLSYELATIKIDVPLDIELDQL---HCGEP---------------------------- 268 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355 DRDT ++ +F S + + ++++ Q+L +E Sbjct: 269 ----------------------DRDTLMELYAELEFKSWIEDLQR-DAKRAGQELTIEEP 305 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 ++ +Y I+ W++KL+ +F ++ DA ++ + ++ + + Sbjct: 306 TAEAR----EAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 360 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + ++ + +D+ +L LK E+ +K+G + K+ + Sbjct: 361 THEAAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKIKVGQHAKFAINL 411 Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 L GI ++G D +L SYVLDS + HD S+ K+L++T +EI Sbjct: 412 LANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAGK 471 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582 + D+I+ Q +A E +++ L+L + +L + L V ++ P++ V+++ Sbjct: 472 GAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVLAR 531 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +E G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPIL 591 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 +KT TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Sbjct: 592 SKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 651 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L F N LD+HR AAE+FGV +E V+ MRR AK INF +IYG+S F LA Q+ Sbjct: 712 QDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 771 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R ++ Y+ RYF R+PG+ Y+E+T+ + G+VETIFGRR++ +IN+ S+R Sbjct: 772 VDRKQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKG 831 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAP+QG+AADI ++AM++V+ L++ L +++LQ+HDELV EV E+ + S+ Sbjct: 832 AERMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISE 891 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I M A L VPL V + V NNW E Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919 >gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] Length = 948 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 357/993 (35%), Positives = 546/993 (54%), Gaps = 90/993 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS +++R F+A P+ + GL N+I G N L KL++ R +H AV FD Sbjct: 19 FILVDGSYYMFRNFHALPVTMQTTQGLHTNSIRGTLNALKKLMEKYRP----THMAVAFD 74 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+++ P YK +RP++P L Q+P + QA GIP + I+G EADDII T + Sbjct: 75 TKAPTFRHKLSPIYKGDRPEMPAELAEQIPYIHKMIQAMGIPLLAIEGVEADDIIGTLAH 134 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A EG V I + DKD+ QLV+P + ++ +++ DI V +K+G+ P +++ L Sbjct: 135 RACLEGHHVIISTGDKDMCQLVNPCVIVENSFDDKRYDIAGVKEKFGVEPRQIIDYLTLM 194 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+ GIG KTA LL++Y +++NIL N ++K K+++ L+ ++ L ++L Sbjct: 195 GDASDGIKGVAGIGAKTAQKLLEQYDSIDNILANVDQLK-GKQQQTFLQSTDSIALDKRL 253 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + TD+ I E L L P SF NIE Sbjct: 254 ATIITDLDIVPDWETLRL-----PTDPSF----------------------NIE------ 280 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN-- 364 E + AI TE++ + I + + ++ Q +E + K SQ N Sbjct: 281 ---EKR--AIFTELEFKSEIASLNHPFHPSNNGNFKAAESAQNAVVEAI-KTSQDSKNTA 334 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF--HSKPIAIAISTLDQKDDTSF 422 N + + D +Q+L S F I T+T D H++ + ++ + Sbjct: 335 NKQWHTVTTQADFDTLIQRLG--ASKHFVIDTETTDVNWQHAELVGLSFALQSH------ 386 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 E ++ ++ H + LT+E +L+ LK +N KIG ++KYD +L Y I Sbjct: 387 --EAYYVPVA-HVDEMGNRIEQLTREDVLAQLKPILQNPQIGKIGQHLKYDAHILANYHI 443 Query: 482 SM-----RGFEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533 ++ D ML SYV+++ + H + +A+ +L + T +++ I DK+ Sbjct: 444 NLINEPSNWAMDTMLASYVINAVATRHGMDDLARHYLHTQTITFEDVAGKGAKQITFDKV 503 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQ 589 + ++A E++++ QL+ L KL E KLLH L+ P+ ++ QME GI Sbjct: 504 PLTVASDYACEDADITYQLFELFSEKLKAEPNNAKLLH---ELEIPVAQILCQMEHDGIL 560 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 +++ L ++SA + + +LE + +GE FNL+SPKQLG++LF +L G KTKTGQ Sbjct: 561 LNKAFLGELSARFDEKIQALETVAFAQAGETFNLASPKQLGEVLFDRLGITGGKKTKTGQ 620 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T+ L I D+P+I+ +LE R LSK+KSTY D+L N + RVHT Y A T Sbjct: 621 YSTSEAVLATI---DHPLIETVLEHRSLSKLKSTYTDALAN-VADSNDRVHTSYHQALTT 676 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S EPNLQNIPI+TD G+ IR AFI+P +K++SADYSQIELR++AH A L + Sbjct: 677 TGRLSSTEPNLQNIPIRTDTGRLIRGAFIAPKGRKVLSADYSQIELRLMAHFANDPVLIR 736 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F+ DIHR AAEI G + V+ + RR AK +NF ++YG+S F LA QL R +A Sbjct: 737 AFQEGHDIHRATAAEILGKAFDDVTSEERRQAKAVNFGLLYGMSEFGLAKQLGFTRQQAQ 796 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 DYIK YF R+P + Y++ T+ + GY+ TI GR++ ++ P +R ERAAIN Sbjct: 797 DYIKLYFARYPTVRAYMQATRTAAQNQGYITTILGRKLFTPDMQHPNRGVRQAAERAAIN 856 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QGSAADI + AMI+V++ L KMLLQ+HDELVFE E++ +++I ++M+ Sbjct: 857 APLQGSAADIIKLAMIAVNEVLPTEH--AKMLLQVHDELVFEADEDKAEAIAELIKNAMQ 914 Query: 950 KACLPK--------INLRVPLKVNIKVSNNWQE 974 + L K ++ VPL V + + +NW E Sbjct: 915 E-VLSKTAKDKGWDVDFAVPLVVEVGIGDNWDE 946 >gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7] Length = 921 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 359/988 (36%), Positives = 557/988 (56%), Gaps = 91/988 (9%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA P ++ K G+ +AI GF N L +L K +H AV Sbjct: 3 LFLIDAYALIYRSYYAFIKNPRINSK--GVNTSAIFGFINSLEDVL----KRENPTHIAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E + YKA R + PE++ +P+++ +A+ IP +E+ +EADD+I T Sbjct: 57 AFDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGIPP-EKM 179 + AEKEGF V +++ DKD QLVS +Y E + + V+ K+G+ E++ Sbjct: 117 VSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIMGVPEVLNKYGLTSTEQV 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYA 237 + L L GD+ DNIPG PG+G KTA LL E+G++EN+L N ++K QKK+ E E A Sbjct: 177 IDLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGAQKKKVE---ENA 233 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E R S+ L ++TDVPI + E N RL LEF IN++++ AA Sbjct: 234 EQIRFSKFLATIKTDVPIEFDAARCVREKPNEERLTEIYTELEFRTFINKLSSE-PVKAA 292 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL----E 353 PV D+ AI T + + + S L+D S TP +L E Sbjct: 293 PKGPVQGDL-------FAIFT----PESTEEPKKSILTDLKS------TPHNYYLTDTEE 335 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 + L+++ + + + +F TD +D + + ++ + Sbjct: 336 KQADLARFLLGQEFF----------------------AFDTETDGIDPLKAGLVGMSFAV 373 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 + E ++ + ++ + + +++ +N LKIG NIK+D Sbjct: 374 KEN--------EAWYVPVPANSVEAA--------KVVERFSPALQNPKSLKIGQNIKFDI 417 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528 LVL +Y + + G D M+ Y+L+ H + +A+ +L Y +E++ + K+ + Sbjct: 418 LVLRKYNVKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQL 476 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + + Q+ E+A E+++V L+L P+L E L ++ ++ P+I V+ +ME TG+ Sbjct: 477 SMRNVPVEQIAEYAAEDADVTLKLKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGV 536 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647 +D LKQ S E++ ++ LE+ +Y+L+G +FN++S KQ+G+ILF +LK AK TKT Sbjct: 537 TLDTVALKQSSGELTASMNKLEQEVYELAGTEFNINSTKQVGEILFDRLKLDEKAKKTKT 596 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G + T+ LE++ +PII +LE+R L K+ STY D+LP IN +T ++HT ++ A Sbjct: 597 GGYSTSEDVLEKLR-NKHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV 655 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITP 766 T TGRL+S PNLQNIP++ DLG++IR+AFI T L SADYSQIELRI+AH++ Sbjct: 656 TSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPH 715 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 + + F++ DIH AA+I+G+ +E+V+ MRR AKT NF IIYGIS F LA +L IPRS Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRS 775 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 E+ + I YF +P I EY+E++ ++ GYVETIF R+ +INS + +R ER Sbjct: 776 ESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAERN 835 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAPIQGSAADI + AM+ +++ E+ L +KM+LQ+HDEL F V +EE +I++ Sbjct: 836 AINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAEEVKKIVLE 895 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME + L+VPL + NW E Sbjct: 896 EMENV----MKLQVPLIADCGEGENWLE 919 >gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331] gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331] Length = 902 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 356/984 (36%), Positives = 551/984 (55%), Gaps = 115/984 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS+++RA+YA P L+ + G P A+ G NML KL+ + + + AV+FD Sbjct: 16 LILIDGSSYLFRAYYALPPLTNRK-GQPTGAMYGVINMLRKLMVEYQPD----YVAVVFD 70 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 TFR+++Y YKANR ++P L Q+ PL + +A G P I +G+EADD+IAT Sbjct: 71 PKGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEI-IRALGFPLIIKEGYEADDVIATLA 129 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A+++G V + + DKDL Q+V+ L +T+ + ++ + V++K+G+PPEK++ L Sbjct: 130 KKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTL 189 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 TGD+ DNIPG+P +G KTA L +Y ++EN++ +A+ IK K EN+ + L R+ Sbjct: 190 TGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHANEIK-GKVGENLRACIDDLPLMRR 248 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LVM V+ D Sbjct: 249 LVM-----------------------------------------------------VISD 255 Query: 306 INTTENKGIAIETEIDRDTTIK---TSQFSS-----LSDQTSKINSEQTPQKLFLERLQK 357 + EN I+TE +R+ I+ +F S L++Q K+ + Q Sbjct: 256 LPLEENPTDLIQTEKNREKLIELFTEYEFKSWLAELLANQDKKVAAFQ------------ 303 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I + K ++W++KL +F T +A +K + ++ + Sbjct: 304 ----------YATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPH- 352 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL--TKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 E ++ L D TG +E+L LK E+ + I N+KYD V Sbjct: 353 -------EAAYVPLG----HDYTGAPAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEV 401 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 L + G+++R D +L SYVL+S + HD+ ++A K+L +++ I + Sbjct: 402 LAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFN 461 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590 ++ + +A E+++V LQL L P + EK L V+E+++ P++ ++ QME+ G+ + Sbjct: 462 HVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLV 521 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D +L+ S E+ + LE+ Y L+G +FNLSSPKQL IL+ +LK P KT GQ Sbjct: 522 DTAMLQAQSLELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ- 580 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 +TA+++ Q D P+ K ILE R L+K+K+TY D LP ++ ++R+HT Y+ T T Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S PNLQNIPI+T+ G+KIRRAFI+PP ++++ADYSQ+ELRI+AHI+K L + Sbjct: 641 GRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHISKDPSLIKA 700 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+ DIHR AAE+FGVN+E+V+P+ RR AK INF ++YG+S F L QL I R A + Sbjct: 701 FDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAQE 760 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI YF R+P +HEY++K + GYVET+FGRR++ +I++ R ERAAINA Sbjct: 761 YIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINA 820 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AADI + AMI V L+ + + +++Q+HDELVFEV E+++ I +ME+ Sbjct: 821 PMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKVIPQIKKAMEE 880 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A + L VPL V++ V NW E Sbjct: 881 A----VALSVPLVVDVGVGGNWDE 900 >gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1] gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1] Length = 943 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 351/992 (35%), Positives = 544/992 (54%), Gaps = 69/992 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFL+D + I+R +YA P ++ K G +AI GF N L +++ R + Sbjct: 1 MAAQKRLFLLDAYALIFRGYYAFIKNPRINSK--GFDTSAILGFTNSLLDVIKRERPD-- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 H AV FD R E++P+YKANR + PE + +P + +A IP I +G+EA Sbjct: 57 --HLAVCFDRGGSVDRVEVFPEYKANRQETPEPITLAIPYIESILKAMKIPVIVKEGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGI 174 DDII T + AEKEG+ +++ DKD QLVS +Y E I V +K+G+ Sbjct: 115 DDIIGTLSKKAEKEGYQTFMVTPDKDFAQLVSENIFMYRPKFGGGYETWGITEVQEKFGV 174 Query: 175 P-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 PE+++ + GDS+DNIPG+PG+G KTA L YG++E +L + +K K +E + Sbjct: 175 ERPEQVIDFLGMMGDSVDNIPGLPGVGEKTAKKFLAAYGSMEGLLAHTHELK-GKMKEKV 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E LS++L + DVP+ E + D + + LEF +L++ + T+ Sbjct: 234 EANGELGMLSKQLATIMLDVPVEFNEEDFEMCDPDLEAVTEIFNELEFRRLLDNLTKTF- 292 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 + EN E + TT K +Q +S T + + TP Sbjct: 293 ------------AKSDENSA-----EANTKTTSKANQKAS---TTGQFDLFATPGGGNAT 332 Query: 354 RLQKLSQYPI--NNDSYTKIVNTK-DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 +S Y D + ++ NT + +QKL S F T + A + + IA Sbjct: 333 EATNISGYQTIKTTDHFYQLANTPLSRKMLLQKLLKQQSVCFDTETTGLKALEVELVGIA 392 Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 S K + ++ S+ T IL + FFE+ K+G N+K Sbjct: 393 FSWE--------KGKGYYVAFPEDQSE--------TTAILEEFRPFFESTTIEKVGQNLK 436 Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----KSRK 525 YD VL Y + ++G D M+ Y+++ H++ +++ +L+Y I+ K K Sbjct: 437 YDIKVLSNYDMPVKGQLFDTMIAHYLINPDMR-HNMDVLSETYLNYQPVSIVELIGKKGK 495 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 + + + ++ Q E+A+E++++ QL +L L ++ ++ P++ V+S MEI Sbjct: 496 NQLSMRQVPLEQQTEYAVEDADITYQLKEHFIKELESGHLTKLFSDVEVPLVSVLSAMEI 555 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAK 644 GI +D D L ++S ++ ++ LE++IY+ +GE+FN+ SPKQLG ILF KLK K Sbjct: 556 EGINLDPDFLGELSKALAVDIDRLEKDIYEQAGEEFNIGSPKQLGPILFDKLKLVDKPKK 615 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TKTGQ+ +TA+D+ D+ I+ +ILEWRQ K++STY D+LPN IN +T R+HT Y+ Sbjct: 616 TKTGQY-STAEDVLSYLAKDHQIVADILEWRQYRKLQSTYVDALPNEINPKTNRIHTVYA 674 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIA 762 A TGRL+S PNLQNIPI+T+ G+++R+AF+ P + L++ADYSQIELRI+A ++ Sbjct: 675 QAVAATGRLSSNNPNLQNIPIRTERGRQVRKAFV-PRDENYVLLAADYSQIELRIIAALS 733 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 K + Q F++ DIH A+ +F V +E+V+ + R +AKT+NF IIYG+S F L+ Q Sbjct: 734 KEDTMMQAFKDGADIHASTASRVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTD 793 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + RSE+ + I Y+ +P + Y+ F R+NGYVET+ GRR + +INS + +R Sbjct: 794 LTRSESKELIDTYYETYPKLKAYMSNQVAFARENGYVETVLGRRRYLKDINSRNAIVRGA 853 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER A+NAPIQGSAADI + AMI+++ E+ +KMLLQ+HDELVF+ ++E+ Sbjct: 854 AERNAVNAPIQGSAADIIKLAMINIYNRFEEEGFKSKMLLQVHDELVFDAHKDELEIIKP 913 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 II ME A + VPL V I V NW E Sbjct: 914 IIKEEMENA----FKMEVPLDVEIGVGQNWLE 941 >gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710] gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579] gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149] gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33] Length = 929 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 360/986 (36%), Positives = 541/986 (54%), Gaps = 71/986 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A L+ DG P A+ G NML +L R + + + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMAQLTAP-DGAPTGAMYGVLNMLRRL----RADYVHDY 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR+E++PDYKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 56 CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----IGWPVLVIPQVE 111 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T +A + G+ V + + DKD+ QLV+ L +T+ E +DIE V K+G+ P Sbjct: 112 ADDVIGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKAKFGVRP 171 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L ++ +A+ IK K EN+ Sbjct: 172 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIK-GKVGENLRAA 230 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + LS LV ++TDV + H L D + + R A + Sbjct: 231 LQRLPLSYDLVTIKTDVDL-----HTELSDG--------------IESLRRTAPKW---- 267 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E F S S + + +N+E P E+ Sbjct: 268 ---AQLVVDFKRWGFRTWLKEAESRMHEAADGDLFGSDSIGEQAALNAE-VPS----EKQ 319 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +L+ P D Y + + + KL + T ++DA ++ + I+I+ Sbjct: 320 PELAPTPEKLD-YQAVTTEAQLAALLDKLSQADTIGIDTETTSLDAMNASLVGISIA--- 375 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E I+I V S + + +++L LK EN KIG N+KYD+ Sbjct: 376 ------FQAGEAIYI--PVGHSLTAAPEQIDLQDVLGRLKPHLENPALKKIGQNLKYDQH 427 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 428 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQISF 486 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G+QI Sbjct: 487 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 545 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y ++G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 546 DRAELSRQSAELGAELMKLEQEAYAVAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 605 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 606 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 664 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 665 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 724 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG+ E VS + RR+AKTINF +IYG+ + LA L I A Sbjct: 725 TAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISA 784 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +I RYF R+PG+ EY+++TK G+VET+FGRR++ +I + ++ R ERAAI Sbjct: 785 KTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAI 844 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI V L D + +K+++Q+HDELV EV E E+ + + M Sbjct: 845 NAPMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 903 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 K + L VPL + V NW+E Sbjct: 904 AK--VDGGLLDVPLVAEVGVGENWEE 927 >gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] Length = 950 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 361/986 (36%), Positives = 549/986 (55%), Gaps = 82/986 (8%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +K+ L+L+DG + +YRAFYA R DG+P A+ GF + L ++++ + E + Sbjct: 32 KKKPGLYLLDGMAMVYRAFYALQQARMRTRDGVPTGAVFGFASSLLRIIEEYQPE----Y 87 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV FD P TFR+E Y YKANRP P+ L+ QL +R +AFGIP + + GFEADD+ Sbjct: 88 LAVAFDSPEKTFRHEKYEAYKANRPAPPDDLITQLADIRELIKAFGIPLVIMPGFEADDL 147 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T E + V I++ DKD+ QLV L K+ E + V +++G PP Sbjct: 148 IGTAARKFEDD-CQVFIVTPDKDMSQLVHDGVRLLKPGKKQNEFELVGSREVAEQFGAPP 206 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E+ + L LTGD+ DNIPG GIG KTA+ LL+EYG+L+NI + +K + R+ ++ E+ Sbjct: 207 EQFIDLLTLTGDTSDNIPGAKGIGPKTASSLLEEYGSLDNIYAHLDDLKPRARK-SLEEF 265 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E L R+LV +RTD+ + + L+ L + L + L+ LE + RV Sbjct: 266 REIMPLVRELVTIRTDLDVPLTLDDLHSGKPDADALFALLRRLELKAIAARV-------- 317 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 P L I D T+ + S++++E T Sbjct: 318 ----PAALGI----------------DPPAATATDGESDPEASEVSAEPT---------- 347 Query: 357 KLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 P S +++T++ + ++KLE S S T ++D F ++ I+ S Sbjct: 348 ---LIPAGEGSEYHLIDTEEAFGKLLEKLEQADSFSVDTETTSLDTFEAELAGISFSLEP 404 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 E F+ T D+ K T+ K LK EN K G N+KYD LV Sbjct: 405 G--------EAFFVYFG-ETGLDA--KTTVAK-----LKPLLENPEIGKTGQNLKYDILV 448 Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 L YG+ ++ E D ML SYVLD S H++ +A LS E++ + KS+I I Sbjct: 449 LKNYGVELQPVEFDTMLASYVLDP-ESRHNLDDMAALHLSRQTVKYDELVGTGKSAIGIF 507 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ ++ ++A +++++ L+L L KL +LL V L+ P++ V++ ME G+ I Sbjct: 508 EVEPQKLSDYACQDADITLKLRGELAAKLEATPELLEVCRTLEFPLVRVLADMEHQGVSI 567 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D + L +++ ++++ L+ L E I++ +GE FN+ SPKQLG ILF LK P+ TKTG + Sbjct: 568 DTEHLAKLAVKVNEELVGLTERIHEAAGETFNIDSPKQLGHILFDVLKLPTKKATKTG-Y 626 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T Q LE++ NPI +LE+R L K+K TY ++LP ++ T R+HT ++ + T T Sbjct: 627 STNVQVLEELALL-NPIAAEVLEYRSLQKLKGTYIEALPKLLHAATGRLHTSFNQSITAT 685 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769 GRL+S PNLQNIPI+TDLG++IRRAFI S P L+SADYSQIELR+ A ++ L + Sbjct: 686 GRLSSSNPNLQNIPIRTDLGKEIRRAFIPSNPENLLLSADYSQIELRVAAELSGDPMLIE 745 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F N DIH A IF + ++V+ MRR AK +NF ++YGI PF L+ +L IP+ EA Sbjct: 746 AFRNHEDIHAATARVIF--DTDEVTSDMRRKAKEVNFGVLYGIQPFGLSQRLGIPQKEAK 803 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 + I Y ++PG+ ++ T R+ GYV T+ GRR + ++NSP +IR ER +N Sbjct: 804 EIIDTYMAKYPGMFSALQTTVEEARKLGYVTTLMGRRRYVPDLNSPNGNIRKAAERVTMN 863 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 PIQG+AADI + AM ++ + L++ +L + MLLQ+HDEL+FE P +E + ++++ M Sbjct: 864 TPIQGTAADIIKYAMCTISRRLKEERLNSVMLLQVHDELLFETPADEQSRLTELVEKCMV 923 Query: 950 KACLPKINLR-VPLKVNIKVSNNWQE 974 A K +R VP++V V NW E Sbjct: 924 DAA-SKCGVRNVPVEVETGVGKNWLE 948 >gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] Length = 921 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 358/988 (36%), Positives = 556/988 (56%), Gaps = 91/988 (9%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA P ++ K G+ +AI GF N L +L K +H AV Sbjct: 3 LFLIDAYALIYRSYYAFIKNPRINSK--GVNTSAIFGFINSLEDVL----KRENPTHIAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E + YKA R + PE++ +P+++ +A+ IP +E+ +EADD+I T Sbjct: 57 AFDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGIPP-EKM 179 + AEKEGF V +++ DKD QLVS +Y E + + V+ K+G+ E++ Sbjct: 117 VSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIMGVPEVLNKYGLTSTEQV 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYA 237 + L L GD+ DNIPG PG+G KTA LL E+G++EN+L N ++K QKK+ E E A Sbjct: 177 IDLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGAQKKKVE---ENA 233 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E R S+ L ++TDVPI + E N RL LEF IN++++ AA Sbjct: 234 EQIRFSKFLATIKTDVPIEFDAARCVREKPNEERLTEIYTELEFRTFINKLSSE-PVKAA 292 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL----E 353 PV D+ AI T + + + S L+D S TP +L E Sbjct: 293 PKGPVQGDL-------FAIFT----PESTEEPKKSILTDLKS------TPHNYYLTDTEE 335 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 + L+++ + + + +F TD +D + + ++ + Sbjct: 336 KQADLARFLLGQEFF----------------------AFDTETDGIDPLKAGLVGMSFAV 373 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 + E ++ + ++ + + +++ +N LKIG NIK+D Sbjct: 374 KEN--------EAWYVPVPANSVEAA--------KVVERFSPALQNPKSLKIGQNIKFDI 417 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528 LVL +Y + + G D M+ Y+L+ H + +A+ +L Y +E++ + K+ + Sbjct: 418 LVLRKYNVKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQL 476 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + + Q+ E+A E++++ L+L P+L E L ++ ++ P+I V+ +ME TG+ Sbjct: 477 SMRNVPVEQIAEYAAEDADITLKLKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGV 536 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647 +D LKQ S E++ ++ LE+ +Y+L+G +FN++S KQ+G+ILF +LK AK TKT Sbjct: 537 TLDTVALKQSSGELTASMNKLEQEVYELAGTEFNINSTKQVGEILFDRLKLDEKAKKTKT 596 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G + T+ LE++ +PII +LE+R L K+ STY D+LP IN +T ++HT ++ A Sbjct: 597 GGYSTSEDVLEKLRS-KHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV 655 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITP 766 T TGRL+S PNLQNIP++ DLG++IR+AFI L SADYSQIELRI+AH++ Sbjct: 656 TSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPH 715 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 + + F++ DIH AA+I+G+ +EKV+ MRR AKT NF IIYGIS F LA +L IPRS Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRS 775 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 E+ + I YF +P I EY+E++ ++ GYVETIF R+ +INS + +R ER Sbjct: 776 ESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLSDINSHNAVVRGYAERN 835 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAPIQGSAADI + AM+ +++ E+ L +KM+LQ+HDEL F V +EE +I++ Sbjct: 836 AINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAEEVKKIVLE 895 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME + L+VPL + NW E Sbjct: 896 EMENV----MKLQVPLIADCGEGENWLE 919 >gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3] gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3] Length = 921 Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust. Identities = 358/988 (36%), Positives = 556/988 (56%), Gaps = 91/988 (9%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA P ++ K G+ +AI GF N L +L K +H AV Sbjct: 3 LFLIDAYALIYRSYYAFIKNPRINSK--GVNTSAIFGFINSLEDVL----KRENPTHIAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E + YKA R + PE++ +P+++ +A+ IP +E+ +EADD+I T Sbjct: 57 AFDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGIPP-EKM 179 + AEKEGF V +++ DKD QLVS +Y E + + V+ K+G+ E++ Sbjct: 117 VSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIMGVPEVLNKYGLTSTEQV 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYA 237 + L L GD+ DNIPG PG+G KTA LL E+G++EN+L N ++K QKK+ E E A Sbjct: 177 IDLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGAQKKKVE---ENA 233 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E R S+ L ++TDVPI + E N RL LEF IN++++ AA Sbjct: 234 EQIRFSKFLATIKTDVPIEFDAARCVREKPNEERLTEIYTELEFRTFINKLSSE-PVKAA 292 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL----E 353 PV D+ AI T + + + S L+D S TP +L E Sbjct: 293 PKGPVQGDL-------FAIFT----PESTEEPKKSILTDLKS------TPHNYYLTDTEE 335 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 + L+++ + + + +F TD +D + + ++ + Sbjct: 336 KQADLARFLLGQEFF----------------------AFDTETDGIDPLKAGLVGMSFAV 373 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 + E ++ + ++ + +++ +N LKIG NIK+D Sbjct: 374 KEN--------EAWYVPVPANSVE--------VAKVVERFSPALQNPKSLKIGQNIKFDI 417 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528 LVL +Y + + G D M+ Y+L+ H + +A+ +L Y +E++ + K+ + Sbjct: 418 LVLRKYNVKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQL 476 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + + Q+ E+A E++++ L+L P+L E L ++ ++ P+I V+ +ME TG+ Sbjct: 477 SMRNVPVEQIAEYAAEDADITLKLKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGV 536 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647 +D LKQ S E++ ++ LE+ +Y+L+G +FN++S KQ+G+ILF +LK AK TKT Sbjct: 537 TLDTVALKQSSGELTASMNKLEQEVYELAGTEFNINSTKQVGEILFDRLKLDEKAKKTKT 596 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G + T+ LE++ +PII +LE+R L K+ STY D+LP IN +T ++HT ++ A Sbjct: 597 GGYSTSEDVLEKLR-NKHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV 655 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITP 766 T TGRL+S PNLQNIP++ DLG++IR+AFI T L SADYSQIELRI+AH++ Sbjct: 656 TSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPH 715 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 + + F++ DIH AA+I+G+ +E+V+ MRR AKT NF IIYGIS F LA +L IPRS Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRS 775 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 E+ + I YF +P I EY+E++ ++ GYVETIF R+ +INS + +R ER Sbjct: 776 ESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAERN 835 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAPIQGSAADI + AM+ +++ E+ L +KM+LQ+HDEL F V +EE +I++ Sbjct: 836 AINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAEVVKKIVLE 895 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME + L+VPL + NW E Sbjct: 896 EMENV----MKLQVPLIADCGEGENWLE 919 >gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2] gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2] Length = 941 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 352/983 (35%), Positives = 529/983 (53%), Gaps = 66/983 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLP----VNAIAGFCNMLWKLLQNSRKESIASHFA 62 L LVDGSS++YRAF+A P L R G P AI G NM+ KL RK+ A + Sbjct: 8 LLLVDGSSYLYRAFHAMPDL-RVTPGDPQSPATGAIRGMVNMMQKL----RKDVRADYAV 62 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFR+ +YP+YKA R +P+ L Q+ + Q G + + G EADD+I Sbjct: 63 CVFDAKGPTFRDALYPEYKAQRSAMPDDLRSQVEPIHEVVQLLGWKVLAVPGVEADDVIG 122 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T +A + V I S DKDL QLV + DT+ + + D+ V ++G+PP MV Sbjct: 123 TLACMASSQQIEVIISSGDKDLSQLVDEHITVIDTMNDRRRDLAGVEAEFGVPPRLMVDY 182 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 Q L GD++DN+PG+P +G KTA L EYG+L+ ++ A IK EN+ + + Sbjct: 183 QTLVGDTVDNVPGVPKVGPKTAVKWLLEYGSLDALVARAGEIK-GIVGENLRKSLDWLPK 241 Query: 243 SRKLVMLRTDVPITIPLEHLILED--CNGPRLISFLKAL----EFTKLINRVATTYDCDA 296 R+L+ ++ D + ++ L D G + S L+ F L+ ++ DA Sbjct: 242 GRELLTIKKDCELADYIDGLPAMDSIAIGAQQTSALRTFYLKYGFKGLVGQI------DA 295 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 N P E+ + + + S + + + P L Sbjct: 296 ENTPP-----------------ELVGGPERRKPRAPTASPDSPGLFDDDEPSLLDTPLAG 338 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 + S N Y I+ + + +W+ K+E + T ++D ++ + ++ S Sbjct: 339 RAS-----NLLYETILTWEALDRWLAKIEAAELVAVDTETTSLDEMRAQIVGVSFSVTPG 393 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 E +I L+ S + E+L+ LK + EN K+G NIKYD+ V Sbjct: 394 --------EAAYIPLT--HDYPSAPEQLPLDEVLARLKPWLENPARPKLGQNIKYDRHVF 443 Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 +GI ++G+ D ML SYVL+ + H +AS+A++ + + +++ I ++ Sbjct: 444 ANHGIEVQGYAHDTMLQSYVLEVTKP-HGLASLAERHVGRSGINYEDLCGKGVHQIKFNQ 502 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQID 591 + ++ E++ E+S+ L + +L P+L EKLL +Y+ L+ + + ++E G+ ID Sbjct: 503 VDIARAAEYSCEDSDQTLDVHRVLWPQLQANEKLLFIYQ-LEMQSSETLYRIERNGVLID 561 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +L + S E+ + LL LE Y+++G+ FNL SPKQL +I F KL KT +G Sbjct: 562 APMLARQSHELGQRLLQLETEAYEMAGQPFNLGSPKQLAEIFFDKLGMKVVKKTPSGARS 621 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T LE++ D+P+ +LE R LSK+K TY D L N RT RVHT Y+ A +TG Sbjct: 622 TDEDVLEKL-AEDHPLPAKLLEHRSLSKLKGTYTDKLAQLANPRTGRVHTHYAQAVAVTG 680 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP+KT G+++R AF++P + SADYSQIELRI+AHI+ L F Sbjct: 681 RLSSNDPNLQNIPVKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGDESLLHAF 740 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 LD+HR AAE+FGV +E+VS + RR+AK INF +IYG+S F LA L I AA Y Sbjct: 741 TAGLDVHRATAAEVFGVALEQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAY 800 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I RYF R+PG+ Y++ T+ ++ GYVET+FGRR+ EINSP R ERAAINAP Sbjct: 801 IDRYFQRYPGVKHYMDSTRQLAKEQGYVETVFGRRLLLPEINSPNGPRRAGAERAAINAP 860 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG+AAD+ + +M+ V + L+ K TKM++Q+HDELVFEVPE E+ I M Sbjct: 861 MQGTAADLIKLSMVKVQQVLDAEKRGTKMIMQVHDELVFEVPEAEVEWVRTEIPRLMAGV 920 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L+VPL I NW++ Sbjct: 921 A----ELKVPLLAEIGFGPNWEQ 939 >gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR] gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR] Length = 921 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 346/987 (35%), Positives = 536/987 (54%), Gaps = 90/987 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN LVDGSS+++RAF+A P L+ G P AI G NML LL+ + SH AV Sbjct: 7 ENPFILVDGSSYLFRAFHAPPHLTNSK-GEPTGAIYGVVNMLRSLLKRYK----PSHMAV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR++IY DYKANRP +P+ L Q+ + QA G+P + I EADD+I T Sbjct: 62 VFDAKGKTFRSDIYQDYKANRPPMPDDLRSQIKPLHDIVQAMGLPLLCIDDVEADDVIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +G I + DKD+ QLV+ L +T+ + +D E V KK+G+ P +++ Sbjct: 122 LARQAGDKGRFTLISTGDKDMAQLVNEHVMLINTMTDTLMDPEGVEKKFGVKPNQIIDYL 181 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GDS DNIPG+P +G KTA LLQ +++ I N + + K + EY Sbjct: 182 ALMGDSSDNIPGLPKVGEKTAQALLQSIPSIDAIYENVDAVTELSFRGAKSMPAKLNEYK 241 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E +SR+L ++ DV + + E L ++ + +L EF + ++ + Sbjct: 242 EQLLMSRELATIKLDVAMDLQPEELKIQTADSEKLQELYSRCEFRRWLDEL--------- 292 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 ++ N+ + ET+ ++ T+ Sbjct: 293 ------METGAATNQVLG-ETDGEKPTS-------------------------------- 313 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 IN D+Y ++ K++ ++ +L +F T +++ ++ + ++++ Sbjct: 314 ----DINRDAYGVLMTEKEVSDYITQLNKFDYFAFDTETTSLNYMEAELVGVSLAMAPG- 368 Query: 418 DDTSFKVETIFIDLS--VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 E ++I + + D G++ L L LK E E K+G N+KYD + Sbjct: 369 -------EAVYIPVGHDYMEAPDQVGRDWL----LEQLKPLLEAEKPQKVGQNLKYDSHI 417 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531 L RY I + G D ML SYV +S S HD+ +++ +L++ + ++I + + Sbjct: 418 LRRYKIRLAGILNDTMLASYVFNSVGSRHDMDTLSLHYLNHKTISFEDIAGKGAKQLTFN 477 Query: 532 KISDSQVQEHAIENSNVILQLWLLL--RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 +I+ Q +A E++++ +L +L + K +L V ++ P++ ++ ME G++ Sbjct: 478 QIALEQAGPYAAEDADITYRLHDVLWNKVKETGSELQSVLTDIEVPLVPILCDMEQYGVR 537 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID +LL + S EI++ L +LE+ ++++GE+FNL SPKQL I F KL+ P KT G Sbjct: 538 IDANLLGKQSQEIAEKLDALEKKAFEIAGEEFNLGSPKQLQRIFFEKLELPIVKKTPKGA 597 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + L ++ D P+ IL+ R LSK+KSTY D LP IN T RVHT Y A T Sbjct: 598 PSTAEEVLHEL-AHDYPLPDVILQHRGLSKLKSTYTDKLPKMINPDTGRVHTSYQQAVTA 656 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIPI+T G+++R+AFI K+++ DYSQIELRI+AH+++ L + Sbjct: 657 TGRLSSTDPNLQNIPIRTAEGRRVRQAFIPEQGYKIVAIDYSQIELRIMAHLSQDESLLK 716 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F LDIHR AAE+FG ++VS RR AK +NF +IYG+S F LA QL I R EA Sbjct: 717 AFAEGLDIHRATAAEVFGCKADEVSNDQRRQAKAVNFGLIYGMSAFGLARQLGIARHEAQ 776 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 Y+ +YF RFPG+ Y+E T+ ++ GYV+T+FGRR+ +I + + R ERAAIN Sbjct: 777 HYMDKYFERFPGVLRYMEDTRKQAKEQGYVKTLFGRRLPLPDIKASNGARRKGAERAAIN 836 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLA--TKMLLQIHDELVFEVPEEEITTASQIIVHS 947 AP+QG+AADI ++AM+ V ++ + +ML+Q+HDELVFE+ E ++T + + Sbjct: 837 APMQGTAADIIKKAMLKVADWIDSNNCQDDVRMLMQVHDELVFEIKESKLTDYIEQLTEV 896 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 MEKA +L VPL NNW E Sbjct: 897 MEKAA----SLDVPLIAEAGKGNNWDE 919 >gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799] gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799] Length = 922 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 350/980 (35%), Positives = 527/980 (53%), Gaps = 85/980 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L+ G P A+ G NML LL K+ SH AV+FD Sbjct: 14 LILVDGSSYLYRAYHAPPHLTNSR-GEPTGAVYGVVNMLRSLL----KQYGPSHMAVVFD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EIY +YKA+RP +P+ L Q+ + +A G+P I I G EADD+I T Sbjct: 69 AKGKTFRDEIYAEYKAHRPPMPDDLRCQIEPLHAIIRALGLPLICISGVEADDVIGTLAQ 128 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE EG V I + DKD+ QLV+ L +T+ + +D+E V K+G+ PE ++ L A+ Sbjct: 129 QAEAEGHDVLISTGDKDMAQLVTDKITLINTMTDTVMDVEGVHNKFGVGPELIIDLLAMM 188 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETA 240 GD +DNIPG+PG+G KTA +LQ G+LE I + + K + + E+ E A Sbjct: 189 GDKVDNIPGLPGVGEKTALAMLQGIGSLEAIYQDVDAVAALGFRGAKTMPKKLAEHKEAA 248 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS L ++TDV + L++ + + L LEF + +N V D I Sbjct: 249 FLSYTLATIKTDVELDQKPSELLIGEADRDALAKLYGDLEFRRWLNEV-----LDGGAIL 303 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 P +N S + P + Sbjct: 304 PA----GNGDNGA-----------------------------SAKAPAQ----------- 319 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N + I+ + W++KL + T ++D ++ + ++ + ++ Sbjct: 320 ---NGTEHELILTESQLDTWIEKLSQAELFAIDTETTSIDYMAAELVGLSFA-VEAGKGA 375 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 V + V +D+ +L+ LK E+ K+G N+KYD VL +YG Sbjct: 376 YLPVAHDYEGAPVQLDRDT---------VLAKLKPLLEDTAPRKVGQNLKYDMSVLAKYG 426 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536 I++ G D ML SY +S H++ +A K+L + ++I ++I Sbjct: 427 IALNGIAFDTMLESYCFNSTAGRHNMDDMALKYLGHKTIHFEDIAGKGAKQKTFNQIPLE 486 Query: 537 QVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + +A E++++ L+L L P+L + V+E+L++P++ ++S ME G+ ID D L Sbjct: 487 EAAPYAAEDADITLRLHQHLWPRLQELAGPTRVFEQLERPLVPIMSAMERHGVLIDTDQL 546 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 Q S+EI+ L SLE+ ++++GE FNL S KQL I F KL +P KT G T + Sbjct: 547 HQQSSEIATTLDSLEQQAHEIAGEVFNLGSTKQLQAIFFDKLGYPVLKKTPKGAPSTAEE 606 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 L+++ D P+ K ILE R L+K+K+TY D LP + K + RVHT Y A T TGRL+S Sbjct: 607 VLQELAL-DYPLPKIILEHRSLAKLKNTYTDKLPQLV-KPSGRVHTSYHQAVTATGRLSS 664 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIPI+T G++IR+AFI+P KL++ DYSQIELRI+AH+++ L + F Sbjct: 665 SDPNLQNIPIRTAEGRRIRQAFIAPEGYKLLAIDYSQIELRIMAHLSQDKGLLEAFAAGK 724 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH+ AAE+FGV+ + V+ + RR AK +NF +IYG+S F LA QL I R+EA +YI RY Sbjct: 725 DIHKATAAEVFGVDFDSVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIGRAEAQEYIDRY 784 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 FHR+PG+ EY+++T+ YVET+ GRR+H EIN+ + ER AINAP+QG+ Sbjct: 785 FHRYPGVLEYMDRTRAQAHDKEYVETLMGRRLHLPEINARNKMRQQAAERTAINAPMQGT 844 Query: 896 AADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 AADI ++AM+ V L + + +++Q+HDELVFEV E + M +A Sbjct: 845 AADIIKKAMLLVADYLSQQAEDEIHLIMQVHDELVFEVREGVAEQHKDALCELMSQAA-- 902 Query: 955 KINLRVPLKVNIKVSNNWQE 974 L VPL + +NW + Sbjct: 903 --ELDVPLLAEGGLGDNWDQ 920 >gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217] gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217] Length = 921 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 358/987 (36%), Positives = 536/987 (54%), Gaps = 89/987 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA+YA P L+ G A+ G NML L+ SH AV Sbjct: 6 ENPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLMSRYHP----SHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFRN++Y +YKA RP +P+ L Q+ PL R+ A G+P I I+G EADD+I Sbjct: 61 VFDAKGKTFRNDMYSEYKAQRPPMPDDLRSQIAPLHRI-IHALGLPLISIEGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A EG A I + DKD+ QLV+ L +T+ + + E V K+G+ PE ++ Sbjct: 120 TIAKRASAEGRATLISTGDKDMAQLVNEHVTLINTMTDTIMGPEEVATKFGVGPELIIDF 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GD DNIPG+PG+G KTA +L G++E +L + + + K I++ Sbjct: 180 LALMGDKSDNIPGLPGVGEKTALAMLNGVGSVEKLLADPQSVLEVGFRGAKTMPAKIIDN 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A+ +LS +L ++TDV + + L ++ N LI+ +EF + + V Sbjct: 240 ADMLKLSYQLATIKTDVELDPDWDLLAVKPHNKDELIACYGEMEFKRWLAEV-------- 291 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 +NK T +KTS N+E +E + Sbjct: 292 ------------LDNKA---------PTQVKTSS-----------NAESDEVMAPVEAIS 319 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 Y I+ D+ W+ KL + T +++ +K + I Sbjct: 320 A---------KYHTILTLDDLDTWIAKLSQAKLIAIDTETTSLNYMDAKLVGI------- 363 Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 SF +E ++ L+ H D+ + + L L+ E+++ K+G N+KYD Sbjct: 364 ----SFAIEAGEAAYLPLA-HDYLDAPSQIDMATA-LEKLRPLLESDNPAKVGQNLKYDI 417 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 + GI ++G D ML SYV +S S HD+ +A K+L + + +++ + Sbjct: 418 SIFANVGIKLKGVHFDTMLESYVFNSVASRHDMDGLALKYLGHKNISFEDVAGKGAKQLT 477 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGI 588 ++I +A E++++ L+L L P+L E +L V+ L+ P+I V+S +E G+ Sbjct: 478 FNQIDLDTAAPYAAEDADITLRLHQHLWPRLEKEPELAQVFTELELPLIQVLSDIERQGV 537 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ID LL Q S E+++ + LE Y+++GEKFNL SPKQL + F KL +P KT G Sbjct: 538 LIDPMLLSQQSDELAQKIDKLELEAYEIAGEKFNLGSPKQLQVLFFEKLAYPIIKKTPKG 597 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K IL R L+K+KSTY D LP +N T RVHT Y A+ Sbjct: 598 APSTAEEVLVELAL-DYPLPKIILAHRSLAKLKSTYTDKLPLMVNGTTGRVHTSYHQANA 656 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIPI+T+ G++IR+AFI+P +K+++ADYSQIELRI+AH+++ L Sbjct: 657 ATGRLSSSDPNLQNIPIRTEEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDKGLL 716 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+FG + E+V+ + RR AK +NF +IYG+S F LA QL IPR+EA Sbjct: 717 TAFAEGKDIHRATAAEVFGAHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRNEA 776 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI YF R+PG+ +Y+E+T+ + GYV T+FGRR++ EI + R ERAAI Sbjct: 777 QTYIDTYFARYPGVLQYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAI 836 Query: 889 NAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI ++AMI++ ++ + + M++Q+HDELVFEV E + T I Sbjct: 837 NAPMQGTAADIIKKAMINIANWIKTETQGEITMIMQVHDELVFEVDEAQAETLKAKICLL 896 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M +A +L V L + NNW E Sbjct: 897 MAQAA----DLDVTLLAEAGIGNNWDE 919 >gi|149919860|ref|ZP_01908336.1| DNA polymerase I [Plesiocystis pacifica SIR-1] gi|149819307|gb|EDM78740.1| DNA polymerase I [Plesiocystis pacifica SIR-1] Length = 933 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 346/986 (35%), Positives = 536/986 (54%), Gaps = 74/986 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 +FLVD ++F++RA++A P+L+ DG PVNA+ G+ M+ Q RKE H +FD Sbjct: 1 MFLVDANNFLFRAYHALPMLT-APDGRPVNAVHGYVRMV----QAIRKEFAPQHLLAVFD 55 Query: 67 YPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 +R E+Y +YKANRP PE L PQ+PLVR AT A IP +E +EADD+IA Y Sbjct: 56 ASGSKGWRRELYAEYKANRPPPPEDLQPQIPLVREATDALSIPWLEDPRYEADDLIARYV 115 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-------TTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 + V I+S+DKDLMQLV+ + L+DT+K ++ V+ K+G+ PEK Sbjct: 116 QAGVEAKLEVVIVSSDKDLMQLVAGPDDVREGSVRLWDTMKNRRVGPAEVVAKFGVGPEK 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + L AL GDS DNIPG+ GIG KTA LL+ YG+LE IL N +IKQKKRREN+ YAE Sbjct: 176 LGDLLALAGDSSDNIPGVKGIGPKTATSLLETYGDLEGILSNTDKIKQKKRRENLETYAE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 AR+SRKLV LRTD + P+E + + + +F L F + A + Sbjct: 236 DARMSRKLVALRTDYDLPRPIEDVADKGPKRATMEAFFTPLGFKATLTG-AVRAGGGSRR 294 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 + P L + K E E+DR+ +N+++ Sbjct: 295 VAPRTLVETIAKIK----ELEVDREAV-------------EVLNADEA------------ 325 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 + ++ + +F++ D + PI +A++ K Sbjct: 326 --------------GVATLDAFLAQARAAEGLAFELELSGDDPLRADPIGLALAIPKAKA 371 Query: 419 DTSFKVE--TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + +E I++ ++ + D + E+L+ + + K H +K ++VL Sbjct: 372 EAPGALERAPIYLPMAHRSLSDGAVQQWKPSEVLAKVGPLLSDAKLPKYTHALKDQQVVL 431 Query: 477 HRYGISMRG---FEDIMLMSYVLDSGRSSHDIASIAQ---KWLSYTRKEILKSRKSSIPI 530 R +++ D +L SY LD RS H++ +A+ L R+ I+ K + Sbjct: 432 SRADLNVEVRNVVGDTLLASYTLDPARSDHNLEGLAKDIGGRLVGDRESIVGKGKKRVGF 491 Query: 531 DKISDSQVQEHAIENSNVILQLW--LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D+++ + A E + + L ++ K E+ +Y ++ P+ V++++E G+ Sbjct: 492 DQVAVAVAGPWAGERAGLAATLGPHMVAAAKAAGEQTQKLYAEVELPLARVLARLERRGV 551 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D+ L++ + E+ + +L+ + + +G + +SPKQLG +LF + P+ KTKTG Sbjct: 552 LLDEAELQRQNDELGGQIDALKSTLQEEAGYAVDPNSPKQLGKLLFEERGLPAKKKTKTG 611 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T AQ LE+++ D PI+K IL++R L+K+K+TY D+LP +N T R+HT + A Sbjct: 612 -YSTDAQTLEELSLLD-PIVKVILDYRSLAKLKNTYLDTLPKLVNPNTGRLHTHFRQAVA 669 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S EPNLQNIPI+T+ G++IRR F++P +L++ DYSQIELR+LAH++K L Sbjct: 670 ATGRLSSREPNLQNIPIRTEQGRRIRRGFVAPEGMQLVTLDYSQIELRVLAHLSKDPNLV 729 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F + D+HR AAE+F V +V+ + RR AK +NF +IYG S F LA QL IP+ A Sbjct: 730 KAFTDGADVHRRTAAEVFEVPEAEVTSEQRRVAKAVNFGVIYGQSAFGLARQLGIPQGRA 789 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YIK YF + PG+ Y+ + + G+ ETIFGRR E+ + R+ ER A Sbjct: 790 GKYIKAYFKKIPGVSSYMNALIDTAKDTGFAETIFGRRRRIPELRRRGAVARSYGERIAR 849 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 N PIQGSAADI + AM+ V + L+D A +MLL +HDEL+FE +++ ++ +M Sbjct: 850 NTPIQGSAADILKIAMVEVERLLDDKPWA-RMLLTVHDELIFECETDKVQELIGLVKPAM 908 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 EK+ +L VPL V NW++ Sbjct: 909 EKSA----SLDVPLLVEGGAGANWED 930 >gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] Length = 905 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 347/980 (35%), Positives = 535/980 (54%), Gaps = 93/980 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R G P A+ G NML KL+ + + E + A IFD Sbjct: 5 LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVSDHKAE----YAACIFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++YP+YK++RP +PE L Q+ + A +A G P + I+G EADD+I T Sbjct: 60 ARGKTFRDDLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLAK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + + + DKDL QLV+ L +T+ E +D V+ K+G+PP+++V L Sbjct: 120 RAAEHDVHTIVSTGDKDLAQLVNSHVTLVNTMTGEVLDEPGVVNKFGVPPDRIVDYLMLV 179 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ +G KTA L E+G+++ ++ A IK N+ E L+R+L Sbjct: 180 GDTVDNVPGVTKVGPKTAVKWLTEFGSIDKLIEGAETIKGVAG-NNLREAIPNFPLTRQL 238 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD-AANIEPVVLD 305 + ++ YDCD ++E V D Sbjct: 239 LTVK-----------------------------------------YDCDLTGHVESV--D 255 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP---QKLFLERLQKLSQYP 362 + A TE+ +T L D T ++E+ P ++ ++ + Q P Sbjct: 256 DLIPRERDTATLTELYERYGFRTW----LRDLTG--DAERVPTGDARIAVD----VPQAP 305 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 D Y I + + W ++L+ + T ++D ++ + + S Sbjct: 306 TELD-YRIISDWAEFDAWFERLQNASLVALDTETTSLDQMQARLVGL-----------SL 353 Query: 423 KVE---TIFIDLSVHTSQDSTGKNTLTK-EILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 VE +I ++ H D G L K E+L+ LK + E+ K+ H+ KYD V Sbjct: 354 AVEPGVACYIPVA-HRGPD--GATQLPKAEVLARLKPWLEDASRAKLLHHAKYDAHVFAN 410 Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 GI++ G +D ML +YVL+S R + +AQ++L + +++ I D+++ Sbjct: 411 EGIALAGITDDTMLQAYVLESHRGV-GLNDLAQRYLGRSGISYEDLCGKGAKQIGFDEVA 469 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + +A E+++ LQL +LRP + + L +L+ + V++ +E G+++D + Sbjct: 470 VDKAGHYAAEDADFTLQLHHVLRPMVAANEGLDRIYQLEIKVSAVLTTIERNGVKVDAEE 529 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L + S ++ + +L LE+ Y+L+G+ FNL+SPKQLG+ILF +++ P KT +G T Sbjct: 530 LGRQSHKLGQEMLRLEQKAYELAGQPFNLNSPKQLGEILFDRMQLPVVRKTASGAPSTDE 589 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L ++ D P+ + +LE+R LSK+KSTY D LP IN T RVHT YS A+ +TGRLA Sbjct: 590 DVLTKLAL-DYPLPQVLLEYRGLSKLKSTYTDKLPRMINPATGRVHTRYSQAAVITGRLA 648 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIP++T+ G+++R AFI+ L+SADYSQIELRI+AH++ L F Sbjct: 649 SSDPNLQNIPVRTEAGRRVREAFIAE-QGMLLSADYSQIELRIMAHVSDDANLQSAFAAG 707 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIHR AAE+FGV + VS RR AK INF +IYG+ F LA+ L I R A YI R Sbjct: 708 EDIHRATAAEVFGVALADVSTDQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDR 767 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF R+PG+ Y+E T+ R+ GYVET+FGRR+ EI R ERAAINAP+QG Sbjct: 768 YFARYPGVAMYMENTRRLAREQGYVETVFGRRLQLPEIRGASGPRRQGAERAAINAPMQG 827 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AAD+ + AM++V LE KL T+M++Q+HDELV E P+ EI +++ ++ + Sbjct: 828 TAADLIKLAMVAVQDWLEAEKLQTRMIMQVHDELVLEAPDNEI----EVVKEALPRLMCS 883 Query: 955 KINLRVPLKVNIKVSNNWQE 974 LRVPL + + NW++ Sbjct: 884 VAELRVPLVAEVGMGKNWEQ 903 >gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518'] Length = 924 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 346/981 (35%), Positives = 537/981 (54%), Gaps = 75/981 (7%) Query: 5 NHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L+L+D + YRA Y + PL++ K G +A GF L KL++ E + Sbjct: 2 QRLYLIDAMALAYRAHYVFISRPLVNSK--GQNTSAAYGFTTSLLKLIE----EHGMDYM 55 Query: 62 AVIFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 AV+FD TFR IY +YKA+R PE LL LP ++ +A IP IE G EADD Sbjct: 56 AVVFDAGGEEGTFREAIYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADD 115 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIP 175 +I T AE G V I+S DKD +QL+SP +Y + + I IE + +G+ Sbjct: 116 VIGTLARRAEAHGIDVVIVSPDKDFLQLLSPRISIYKPARRGETFDLITIETFRETYGLE 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P + + + AL GD DN+PG+PGIG KTA L+Q+YG++EN+L +A +K K+ RE +L Sbjct: 176 PHQFIDVLALMGDPSDNVPGVPGIGEKTAVQLIQQYGSVENLLAHAEEVKGKRAREGLLN 235 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 + E A LS++LV +RTDVP+ I E + PRL+ + LEF L+ R+ + Sbjct: 236 HREEALLSKRLVTIRTDVPLRIRWEAFHRARPDLPRLLQIFQELEFDSLVRRIR---EGG 292 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 A I + R+ + + + +E P+ F Sbjct: 293 LAGI--------------------VRREAALDEA-----------LEAEGEPEFDFGP-Y 320 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + L Y Y + N + + + V +L+ + + T + +A + + IA S Sbjct: 321 EPLQVYDPEKADYRIVRNRQQLDELVARLDGLERLAIDTETTSTEAMWASLVGIAFS--- 377 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + V T D T T+ +L L K+G N+KYD +V Sbjct: 378 WEKGQGYYVPTPLPD------------GTPTETVLERLAPILRRAQ-RKVGQNLKYDLVV 424 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 L ++G+ + + D M+ Y++ + H++ +A+++L Y E++ S + + Sbjct: 425 LAQHGVEVPPPYFDTMVAHYLI-APEEPHNLDVLARQYLRYQMVAITELIGSGRDQKSMR 483 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 +S +V +A E++++ LQL +L +L L H+ E ++ P+I+V++ ME TGI ID Sbjct: 484 DVSIDEVGPYACEDTDIALQLADVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGICID 543 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 + +L+++ ++ L LE IY+++G +FN+ SP+QL D+LF KL A+T TG+ Sbjct: 544 RTVLREIGKQLEAELHELEAKIYEVAGVEFNIGSPQQLADVLFKKLGLKPRARTSTGRPS 603 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T L+++ +P+ IL+WR L+K+KSTY D L I+ T R+HT ++ T TG Sbjct: 604 TKESVLQELAT-QHPLPGLILDWRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTATG 662 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S PNLQNIP++T++G++IRRAF+ P KL+SADY QIELRILA ++ L + F Sbjct: 663 RLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIH AA +F V E+V+P+ RR AK +N+ I YGIS + LA +LR EA + Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQEL 782 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I+ Y FPG+ Y+ + RQ GYVET+ GRR + INS + R++ ER A+N P Sbjct: 783 IEEYQRAFPGVTRYLHRVVEKARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVNMP 842 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+ AD+ + AM+ ++ L+ KMLLQ+HDELVFE+P EE+ Q++ M++A Sbjct: 843 IQGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDELVFEMPPEEVEPVRQLVEQEMKQA 902 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 LP+ VP++V+I V +NW Sbjct: 903 -LPREG--VPIEVDIGVGDNW 920 >gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200] Length = 897 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 356/976 (36%), Positives = 540/976 (55%), Gaps = 92/976 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RA++A P L+ G P AI G NML KL E + AV+FD Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+++YP YKA+R I + L Q+ + + G I G EADD+I T Sbjct: 59 AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQ 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +K+ + + I + DKD+ QLV+ LYD++K D+ V++K+ I P +M+ AL Sbjct: 119 KLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPGIP +G KTA LQ+Y N++ I+ N +IK K EN+ + +LS +L Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 ++ D+ + + +E L + + LI EF L+ D D ++I+ V Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIKIVT--- 288 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + + +AIE Sbjct: 289 SQAQAADVAIE------------------------------------------------- 299 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I + + +LE S +F TD+++A+ + + ++ K+ +F + Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFAFDTETDSLNAYEANLVGLSFCA---KEGRAFYIPL 355 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 L V Q G +L LK F + +K+ HN K+D+ VL +Y I + G Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540 +D M+M+YVL S HD+ S++++ L +YT I + K +D++ V + Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTA--IAGTGKQQQTLDQVDIEIVAK 465 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++++ +L+ + L +K+L +Y L+ P+ +++QME TG++ID L Q S Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 A + ++ LE Y+L+G++FNLSSP QL +ILF KL P KT GQ T+ + L Q Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + D I I+++R LSK+K+TY D LP ++ RVHT Y+ T+TGRL+S +PN Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPIK+ G+KIR AFI+ +++ADYSQIELRI+AH++K L +VF +LDIH Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHS 703 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI YF+R+ Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 P + EY+ K F +QNGYVETI GRR++ EINS RN ERAAINAP+QG+AADI Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823 Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 ++AMI+V+ + +++ KM++Q+HDELVFEV + ++ I ME A + L Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879 Query: 959 RVPLKVNIKVSNNWQE 974 VPL+VN+ +W + Sbjct: 880 NVPLEVNVDSGKSWDQ 895 >gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] Length = 930 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 348/981 (35%), Positives = 538/981 (54%), Gaps = 74/981 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGSS+++RAF+ P L+ G AI G NML L+ K+ +H AVIFD Sbjct: 9 FILVDGSSYLFRAFHGLPPLTNSK-GQDTGAIYGVVNMLKSLI----KQYNPTHMAVIFD 63 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++IY +YKANRP +PE L Q+ + +A G+P I G EADD+I T Sbjct: 64 AKGKTFRDDIYKEYKANRPPMPEELRSQIEPLHTIIKAMGLPVIVESGVEADDVIGTLAK 123 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G I + DKD+ QLV+ L +T+ + +D+E V K+GIPPE ++ AL Sbjct: 124 HATEKGIDTLISTGDKDMAQLVNKHVTLINTMTNQLMDVEGVNTKFGIPPELVIDFLALK 183 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAETA 240 GD +DNIPG+PG+G K+A LL G ++ I N +I K + EY E A Sbjct: 184 GDKVDNIPGVPGVGDKSAQALLNGIGGIDEIYKNLDKIADLSFRGSKSMAAKMEEYEEQA 243 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 RLS L + D+ + +E L+ + +L EF + A + Sbjct: 244 RLSYTLATISIDLELDYDVETLMPCQADNEQLRDLFAEYEFKRW-----------HAEVS 292 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 ++ +T+ T TS SS S QTS + + Sbjct: 293 ALLAGGDTSS-------------ATESTSAESSDSTQTS----------------ESATS 323 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 I+ Y +++ + W+ KL+ +F T +++ ++ + ++ + Sbjct: 324 GDIDKSKYETVLDEETFNTWLGKLQKAQLIAFDTETTSLNYMDAELVGVSFCIEEG---- 379 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 E ++ ++ H D+ + L++E +L LK E+ + +K+G +IKYDK VL Y Sbjct: 380 ----EAAYVPVA-HDYPDAPTQ--LSREFVLDALKPILESSNIIKVGQHIKYDKNVLANY 432 Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535 I++ G D ML SYVL+S HD+ S+A +L + ++I + ++I+ Sbjct: 433 DITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLGHKTIHFEDIAGKGAKQLTFNQIAL 492 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + +A E++++ L+L + KL + +L ++ ++ P+ V+S+ME G+ ID Sbjct: 493 EEAGPYAAEDADITLRLHNTIWAKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLIDSQR 552 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L Q S +++ + LE+ +++ +GE FNL S KQL ILF K+ P KT G +T+ Sbjct: 553 LSQQSQDLAARIAELEKEVHEEAGEPFNLGSTKQLQHILFEKMSLPIIKKTPKGA-PSTS 611 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 +D+ Q + P+ K I+E+R L+K+K+TY D LP IN RT RVHT Y A T TGRL+ Sbjct: 612 EDVLQELALEYPLPKKIMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQAITATGRLS 671 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIPI+ + G+++R+AF+ K ++ADYSQIELRI+AH++ L F + Sbjct: 672 STDPNLQNIPIRNEEGRRVRQAFVPRKGNKFVAADYSQIELRIMAHLSGDKGLLDAFAHG 731 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH+ A+E+FGV +++V+ + RR AK INF +IYG+S F LA QL IPR+EA Y+ Sbjct: 732 KDIHKATASEVFGVPLDEVTTEQRRSAKAINFGLIYGMSAFGLAKQLNIPRNEAQKYMDL 791 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF R+PG+ EY++ T+ ++ GYVET+FGRR++ +I + + R ERAAINAP+QG Sbjct: 792 YFERYPGVLEYMDSTRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINAPMQG 851 Query: 895 SAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 +AADI + AMI V + + M++Q+HDELVFE+ E+++ + + I ME A Sbjct: 852 TAADIIKMAMIKVDDWISKNAADDVTMMMQVHDELVFEIKEDKVDSYVKTINTLMESAA- 910 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 L VPL V V NW E Sbjct: 911 ---TLNVPLVVEAGVGENWDE 928 >gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275] Length = 931 Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust. Identities = 356/986 (36%), Positives = 535/986 (54%), Gaps = 69/986 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L+ ++ +AS IK K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLQAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R + Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E + E+ Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK EN KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQISF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP+ I+ R RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPDMISPRDNRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +PP ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG E VSP+ RR+AKTINF +IYG+ + LA L I A Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK G+VET+FGRR++ +I + ++ R ERAAI Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI V + L L +K+++Q+HDELV EV E E+ + + M Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVVETELDFVKEKLPQIM 905 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 K ++ VPL + V NW+E Sbjct: 906 AKVGGGLLD--VPLVAEVGVGENWEE 929 >gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18] gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] Length = 897 Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust. Identities = 356/976 (36%), Positives = 539/976 (55%), Gaps = 92/976 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RA++A P L+ G P AI G NML KL E + AV+FD Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+++YP YKA+R I + L Q+ + + G I G EADD+I T Sbjct: 59 AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQ 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +K+ + + I + DKD+ QLV+ LYD++K D+ V++K+ I P +M+ AL Sbjct: 119 KLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPGIP +G KTA LQ+Y N++ I+ N +IK K EN+ + +LS +L Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 ++ D+ + + +E L + + LI EF L+ D D ++I+ V Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIKIVT--- 288 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + + +AIE Sbjct: 289 SQAQAADVAIE------------------------------------------------- 299 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I + + +LE S +F TD+++ + + + ++ K+ +F + Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 L V Q G +L LK F + +K+ HN K+D+ VL +Y I + G Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540 +D M+M+YVL S HDI S++++ L +YT I + K +D++ V + Sbjct: 409 VDDTMIMAYVLKSS-GKHDIDSLSKEHLGIEPIAYTA--IAGTGKQQQTLDQVDIEIVAK 465 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++++ +L+ + L +K+L +Y L+ P+ +++QME TG++ID L Q S Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 A + ++ LE Y+L+G++FNLSSP QL +ILF KL P KT GQ T+ + L Q Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + D I I+++R LSK+K+TY D LP ++ RVHT Y+ T+TGRL+S +PN Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPIK+ G+KIR AFI+ +++ADYSQIELRI+AH++K L +VF +LDIH Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHS 703 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI YF+R+ Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 P + EY+ K F +QNGYVETI GRR++ EINS RN ERAAINAP+QG+AADI Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823 Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 ++AMI+V+ + +++ KM++Q+HDELVFEV + ++ I ME A + L Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879 Query: 959 RVPLKVNIKVSNNWQE 974 VPL+VN+ +W + Sbjct: 880 NVPLEVNVDSGKSWDQ 895 >gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996] gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996] Length = 933 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 361/989 (36%), Positives = 537/989 (54%), Gaps = 84/989 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A LS DG P A+ G NML +L R + + + AV+FD Sbjct: 6 LLLVDGSSYLYRAYHAMAQLSAP-DGAPTGALYGVLNMLRRL----RADYVHDYCAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIA 122 FR+E++PDYKA RP +P+ L PQ LP LVRL G P + I EADD+I Sbjct: 61 AKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVEADDVIG 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T +A + G+ V + + DKD+ QLV+ L +T+ E +DIE V K+G+ P+++ Sbjct: 117 TLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDY 176 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD +DN+PG+ G KTA L+ YG+L ++ +A+ IK K EN+ L Sbjct: 177 LALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIK-GKVGENLQAALPQLPL 235 Query: 243 SRKLVMLRTDV----PITIPLEHLILEDCNGPRLISFLKALEFTKLINRV------ATTY 292 S LV ++TDV ++ LE L +L K F + A Sbjct: 236 SYDLVTIKTDVDLHAELSDGLESLRRTSPKWSQLAVDFKRWGFRTWLKEAESRMHEAAEG 295 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 D ++ + EN G + E I+ + + ++ T + F Sbjct: 296 DLFGSDTIGEQAALGLPENGGTSSEKIIEHAPAPEKLDYQAV-----------TTEAQFA 344 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 L +LSQ +TIG T ++DA ++ + I+I+ Sbjct: 345 ALLDRLSQ-----------------------ADTIG---IDTETTSLDAMNASLVGISIA 378 Query: 413 TLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471 F+ E ++I V S + + +++L LK EN KIG N+KY Sbjct: 379 ---------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPVLKKIGQNLKY 427 Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527 D+ V YGI++ G D ML SY+++S H + ++++WL T + + Sbjct: 428 DQHVFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQ 486 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 I ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G Sbjct: 487 IGFADVAIEQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNG 545 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KT 645 +QID+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT Sbjct: 546 VQIDRAELARQSAELGAELMKLEQEAYAAAGQLFNLNSPKQLQEILFDKMGIPTKGLKKT 605 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 G T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ Sbjct: 606 AKGGISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQ 664 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ Sbjct: 665 AVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDK 724 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F+N D+H AAE+FG+ E VS + RR+AKTINF +IYG+ + LA L I Sbjct: 725 TLIAAFQNGEDVHCRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDN 784 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 A +I RYF R+PG+ EY+++TK G+VET+FGRR++ +I + ++ R ER Sbjct: 785 LSAKTFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAER 844 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AAINAP+QG+A+D+ +RAMI V + L D L +K+++Q+HDELV EVPE E+ + Sbjct: 845 AAINAPMQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPESELDLVKTNLP 904 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A + K L VPL + V NW+E Sbjct: 905 ELM--ADVGKGLLNVPLVAEVGVGENWEE 931 >gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126] Length = 930 Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust. Identities = 350/987 (35%), Positives = 533/987 (54%), Gaps = 86/987 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGSS+++RAF+ P L+ G AI G NML L+ K+ +H AVIFD Sbjct: 9 FILVDGSSYLFRAFHGLPPLTNSK-GQDTGAIYGVVNMLKSLI----KQYNPTHMAVIFD 63 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++IY +YKANRP +P+ L Q+ + +A G+P I G EADD+I T Sbjct: 64 AKGKTFRDDIYKEYKANRPPMPDELRSQIEPLHAIIKAMGLPVIVESGVEADDVIGTLAK 123 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G I + DKD+ QLV+ L +T+ + +D+E V K+GIPPE ++ AL Sbjct: 124 HATEKGIDTLISTGDKDMAQLVNEHVTLINTMTNQLMDVEGVNTKFGIPPELVIDFLALK 183 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETA 240 GD +DNIPG+PG+G K+A LL G +++I N +I K + EY E A Sbjct: 184 GDKVDNIPGVPGVGDKSAQALLNGIGGIDDIYKNLDKIADLSFRGSKSMAAKMQEYEEQA 243 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL---INRVATTYDCDAA 297 RLS L + D+ + +E L+ + +L EF + ++ + D A Sbjct: 244 RLSYTLATISIDLDLDYDVEALMPCQADNEQLRDLFAEYEFKRWHAEVSALIAGGDTSGA 303 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N NT E K E ++ Sbjct: 304 NA-------NTNEEK------------------------------------SDSAEESEQ 320 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y ++ + WV KLE +F T +++ ++ + ++ + Sbjct: 321 SESVEIDKSKYETVLEEEHFNAWVAKLEKAELIAFDTETTSLNYMDAELVGVSFCIEEG- 379 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476 E ++ ++ H D+ + L++E +L LK E++ +K+G +IKYDK VL Sbjct: 380 -------EAAYVPVA-HDYPDAPAQ--LSREFVLDALKPILESDTVIKVGQHIKYDKNVL 429 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 Y I++ G D ML SYVL+S HD+ S+A +L + +EI + ++ Sbjct: 430 ANYDITLNGIGFDTMLESYVLNSTAQRHDMDSLALAYLGHKTIHFEEIAGKGAKQLTFNQ 489 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQID 591 IS + +A E++++ L+L + KL + +L ++ ++ P+ V+S+ME G+ ID Sbjct: 490 ISLEEAGPYAAEDADITLRLHNAIWTKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLID 549 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L+Q S +++ + LE +++ +GE FNL S KQL +LF K+ P KT G Sbjct: 550 SQRLRQQSQDLATRIAELESEVHEEAGEPFNLGSTKQLQHVLFEKMSLPIIKKTPKGA-P 608 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 +T++D+ Q + P+ K I+E+R L+K+K+TY D LP IN RT RVHT Y A T TG Sbjct: 609 STSEDVLQELALEYPLPKKIMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSYHQAVTATG 668 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+ + G+++R+AF+ K ++ADYSQIELRI+AH++ L F Sbjct: 669 RLSSTDPNLQNIPIRNEEGRRVRQAFVPREGNKFVAADYSQIELRIMAHLSGDKGLLDAF 728 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DIH+ AAE+FGV +++V+ + RR AK INF +IYG+S F L+ QL IPR+EA Y Sbjct: 729 AHGKDIHKATAAEVFGVPLDEVTTEQRRSAKAINFGLIYGMSAFGLSKQLNIPRNEAQKY 788 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF R+PG+ EY++ T+ ++ GYVET+FGRR++ +I + + R ERAAINAP Sbjct: 789 MDLYFERYPGVLEYMDSTRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAINAP 848 Query: 892 IQGSAADITRRAMISV----HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +QG+AADI + AMI V K+ D M++Q+HDELVFE+ E+++ T I Sbjct: 849 MQGTAADIIKMAMIKVDDWIRKNASDD---VTMMMQVHDELVFEIREDKVETYVSTITAL 905 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A L VPL V V NW E Sbjct: 906 MESAA----TLNVPLVVEAGVGENWDE 928 >gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus] Length = 924 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 348/979 (35%), Positives = 533/979 (54%), Gaps = 75/979 (7%) Query: 7 LFLVDGSSFIYRA---FYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L+L+D + YRA F + PL++ K G +A GF L KL++ E + AV Sbjct: 4 LYLIDAMALAYRAQYVFISRPLVNSK--GQNTSAAYGFTTSLLKLIE----EHGMDYMAV 57 Query: 64 IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 +FD TFR IY +YKA+R PE LL LP ++ +A IP IE G EADD+I Sbjct: 58 VFDAGGEEGTFREAIYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADDVI 117 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPE 177 T AE G V I+S DKD +QL+SP +Y + + I IE + +G+ P Sbjct: 118 GTLARRAEAHGIDVVIVSPDKDFLQLLSPHVSIYKPARRGETFDLITIETFRETYGLEPH 177 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 + + + AL GD DN+PG+PGIG KTA L+Q+YG++EN+L +A +K K+ RE +L + Sbjct: 178 QFIDVLALMGDPSDNVPGVPGIGEKTAVQLIQQYGSVENLLAHAEEVKGKRAREGLLNHR 237 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS++LV +RTDVP+ I E + PRL+ + LEF L+ R+ Sbjct: 238 EEALLSKRLVTIRTDVPLRIRWEAFHRARPDLPRLLQIFQELEFDSLVRRIREGGLAGIV 297 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N E + ++ + ETE + D F + Sbjct: 298 NGEAAL-------DEALEAETEPEFD-------FGPY---------------------EP 322 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 L Y Y + N + + + V L+ + T + +A + + IA S + Sbjct: 323 LQVYDPEKADYRIVRNRQQLDELVAHLDGFERLAIDTETTSTEAMWASLVGIAFS---WE 379 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V T D T T+ +L L K+G N+KYD +VL Sbjct: 380 KGQGYYVPTPLPD------------GTPTETVLERLAPILRRAQ-RKVGQNLKYDLVVLA 426 Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 R+G+ + + D M+ Y++ + H++ +A+++L Y + E++ S + + + Sbjct: 427 RHGVQVPPPYFDTMVAHYLI-APEEPHNLDVLARQYLRYQMVSITELIGSGRDQKSMRDV 485 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 S +V +A E++++ LQL +L +L L H+ E ++ P+I+V++ ME TGI ID+ Sbjct: 486 SIDEVGPYACEDTDIALQLADVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGICIDRA 545 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 +L+++ ++ L LE IY+++G +FN+ SP+QL D+LF KL A+T TG+ T Sbjct: 546 VLREIGKQLEAELHELEVKIYEVAGVEFNIGSPQQLADVLFKKLGLKPRARTSTGRPSTK 605 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 L+++ +P+ IL+WR L+K+KSTY D L I+ T R+HT ++ T TGRL Sbjct: 606 ESVLQELAT-QHPLPGLILDWRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTATGRL 664 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S PNLQNIP++T++G++IRRAF+ P KL+SADY QIELRILA ++ L + F Sbjct: 665 SSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAFLE 724 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIH AA +F V E+V+P+ RR AK +N+ I YGIS + LA +LR EA + I+ Sbjct: 725 GQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQELIE 784 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 Y FPG+ Y+ + RQ GYVET+ GRR + INS + R++ ER A+N PIQ Sbjct: 785 EYQRAFPGVTRYLHRVVEEARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVNMPIQ 844 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+ AD+ + AM+ ++ L+ KMLLQ+HDELVFE+P EE+ Q++ M++A L Sbjct: 845 GTQADMIKLAMVHIYHRLKREGYRAKMLLQVHDELVFEMPPEEVEPVRQLVEQEMKQA-L 903 Query: 954 PKINLRVPLKVNIKVSNNW 972 P VP++V+I V +NW Sbjct: 904 PLEG--VPIEVDIGVGDNW 920 >gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252] gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252] Length = 924 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 350/981 (35%), Positives = 533/981 (54%), Gaps = 75/981 (7%) Query: 5 NHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L+L+D + YRA Y + PL++ K G +A GF L KL++ E + Sbjct: 2 QRLYLIDAMALAYRAHYVFISRPLVNSK--GQNTSAAYGFTTSLLKLIE----EHGMDYM 55 Query: 62 AVIFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 AV+FD TFR IY +YKA+R PE LL LP ++ +A IP IE G EADD Sbjct: 56 AVVFDAGGEEGTFREAIYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADD 115 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIP 175 +I T AE G V I+S DKD +QL+SP +Y + + I IE + +G+ Sbjct: 116 VIGTLARRAEAHGIDVVIVSPDKDFLQLLSPRISIYKPARRGETFDLITIETFRETYGLE 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P + + + AL GD DN+PG+PGIG KTA L+Q+YG++EN+L +A +K K+ RE +L Sbjct: 176 PHQFIDVLALMGDPSDNVPGVPGIGEKTAVQLIQQYGSVENLLAHAEEVKGKRAREGLLN 235 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 + E A LS++LV +RTDVP+ I E + PRL+ + LEF L+ R+ Sbjct: 236 HREEALLSKRLVTIRTDVPLRIRWEAFHRARPDLPRLLQIFQELEFDSLVRRIREGGLAG 295 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 N E LD E +G E E D F Sbjct: 296 IVNGE-AALD-EALEAEG---EPEFD---------FGPY--------------------- 320 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + L Y Y + N + + + V +L+ + + T + +A + + IA S Sbjct: 321 EPLQVYDPEKADYRIVRNRQQLDELVARLDGLERLAIDTETTSTEAMWASLVGIAFS--- 377 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + V T D T T+ +L L K+G N+KYD +V Sbjct: 378 WEKGQGYYVPTPLPD------------GTPTETVLERLAPILRRAQ-RKVGQNLKYDLVV 424 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 L ++G+ + + D M+ Y++ + H++ +A+++L Y E++ S + + Sbjct: 425 LAQHGVEVPPPYFDTMVAHYLI-APEEPHNLDVLARQYLRYQMVAITELIGSGRDQKSMR 483 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 +S +V +A E++++ LQL +L +L L H+ E ++ P+I+V++ ME TGI ID Sbjct: 484 DVSIDEVGPYACEDTDIALQLADVLAAELDRHGLRHIAEEMEFPLIEVLADMERTGICID 543 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 + +L+++ ++ L LE IY+++G +FN+ SP+QL D+LF KL A+T TG+ Sbjct: 544 RTVLREIGKQLEAELHELEAKIYEVAGVEFNIGSPQQLADVLFKKLGLKPRARTSTGRPS 603 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T L+++ +P+ IL+WR L+K+KSTY D L I+ T R+HT ++ T TG Sbjct: 604 TKESVLQELAT-QHPLPGLILDWRHLAKLKSTYVDGLEPLIHPETGRIHTTFNQTVTATG 662 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S PNLQNIP++T++G++IRRAF+ P KL+SADY QIELRILA ++ L + F Sbjct: 663 RLSSSNPNLQNIPVRTEMGREIRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIH AA +F V E+V+P+ RR AK +N+ I YGIS + LA +LR EA + Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQEL 782 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I+ Y FPG+ Y+ + RQ GYVET+ GRR + INS + R++ ER A+N P Sbjct: 783 IEEYQRAFPGVTRYLHRVVEEARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVNMP 842 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+ AD+ + AM+ ++ L+ KMLLQ+HDELVFE+P EE+ Q++ M++A Sbjct: 843 IQGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDELVFEMPPEEVEPVRQLVEQEMKQA 902 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 LP VP++V+I V +NW Sbjct: 903 -LPLEG--VPIEVDIGVGDNW 920 >gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] Length = 902 Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust. Identities = 356/984 (36%), Positives = 551/984 (55%), Gaps = 115/984 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS+++RA+YA P L+ + G P A+ G NML KL+ + + + AV+FD Sbjct: 16 LILIDGSSYLFRAYYALPPLTNRK-GQPTGAMYGVINMLRKLMVEYQPD----YVAVVFD 70 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 TFR+++Y YKANR ++P L Q+ PL + +A G P I +G+EADD+IAT Sbjct: 71 PKGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEI-IRALGFPLIIKEGYEADDVIATLA 129 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A+++G V + + DKDL Q+V+ L +T+ + ++ + V++K+G+PPEK++ L Sbjct: 130 KKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTL 189 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 TGD+ DNIPG+P +G KTA L +Y ++EN++ +A IK K + Sbjct: 190 TGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHAHEIKGK--------------VGEN 235 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 L D+P L+ R+ T V+ D Sbjct: 236 LRACIDDLP-----------------------------LMRRLVT-----------VISD 255 Query: 306 INTTENKGIAIETEIDRDTTIK---TSQFSS-----LSDQTSKINSEQTPQKLFLERLQK 357 + EN I+TE +R+ I+ +F S L++Q K+ + Q Sbjct: 256 LPLEENPTDLIQTEKNREKLIELFTEYEFKSWLAELLANQDKKVAAFQ------------ 303 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I + K ++W++KL +F T +A +K + ++ + Sbjct: 304 ----------YATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPH- 352 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL--TKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 E ++ L D TG +E+L LK E+ + I N+KYD V Sbjct: 353 -------EAAYVPLG----HDYTGAPAQLDKEEVLRKLKPLLEDPNKTIICQNLKYDAEV 401 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 L + G+++R D +L SYVL+S + HD+ ++A K+L +++ I + Sbjct: 402 LAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFN 461 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590 ++ + +A E+++V LQL L P + EK L V+E+++ P++ ++ QME+ G+ + Sbjct: 462 HVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLV 521 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D +L+ S E+S + LE+ Y L+G +FNLSSPKQL IL+ +LK P KT GQ Sbjct: 522 DTAMLQAQSIELSGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ- 580 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 +TA+++ Q D P+ K ILE R L+K+K+TY D LP ++ ++R+HT Y+ T T Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S PNLQNIPI+T+ G+KIRRAFI+PP ++++ADYSQ+ELRI+AHI+K L + Sbjct: 641 GRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHISKDPSLIKA 700 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+ DIHR AAE+FGVN+E+V+P+ RR AK INF ++YG+S F L QL I R A + Sbjct: 701 FDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAQE 760 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI YF R+P +HEY++K + GYVET+FGRR++ +I++ R ERAAINA Sbjct: 761 YIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINA 820 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AADI + AMI V L+ + + +++Q+HDELVFEV E+++ I +ME+ Sbjct: 821 PMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKVIPQIKKAMEE 880 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A + L VPL V++ V NW E Sbjct: 881 A----VALSVPLVVDVGVGGNWDE 900 >gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] Length = 897 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 355/976 (36%), Positives = 539/976 (55%), Gaps = 92/976 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RA++A P L+ G P AI G NML KL E + AV+FD Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNNQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +FR+++YP YKA+R I + L Q+ + + G I G EADD+I T Sbjct: 59 AKGKSFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQ 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +K+ + + I + DKD+ QLV+ LYD++K D+ V++K+ I P +M+ AL Sbjct: 119 KLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPGIP +G KTA LQ+Y N++ I+ N +IK K EN+ + +LS +L Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 ++ D+ + + +E L + + LI EF L+ D D ++I+ V Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIKIVT--- 288 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + + +AIE Sbjct: 289 SQAQAADVAIE------------------------------------------------- 299 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I + + +LE S F TD+++ + + + ++ K+ +F + Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFVFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 L V Q G +L LK F + +K+ HN K+D+ VL +Y I + G Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540 +D M+M+YVL S HD+ S++++ L +YT I + K +D++ V + Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTA--IAGTGKQQQTLDQVDIEIVAK 465 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++++ +L+ + L +K+L +Y L+ P+ +++QME TG++ID L Q S Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTTILNQMEKTGVKIDATKLIQQS 525 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 A + ++ LE Y+L+G++FNLSSP QL +ILF KL P KT GQ T+ + L Q Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + D I I+++R LSK+K+TY D LP ++ RVHT Y+ T+TGRL+S +PN Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPIK+ G+KIR AFI+ +++ADYSQIELRI+AH++K L +VF +LDIH Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHS 703 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI YF+R+ Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 P + EY+ K F +QNGYVETI GRR++ EINS RN ERAAINAP+QG+AADI Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823 Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 ++AMI+V+ + +++ KM++Q+HDELVFEV + ++ I ME A + L Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879 Query: 959 RVPLKVNIKVSNNWQE 974 VPL+VN+ +W + Sbjct: 880 NVPLEVNVDSGKSWDQ 895 >gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304] Length = 937 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 361/993 (36%), Positives = 542/993 (54%), Gaps = 77/993 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A L+ DG P A+ G NML +L R + + + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMAQLTAP-DGAPTGAMYGVLNMLRRL----RADYVHDY 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR+E++PDYKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 56 CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----IGWPVLVIPQVE 111 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T +A + G+ V + + DKD+ QLV+ L +T+ E +DIE V K+G+ P Sbjct: 112 ADDVIGTLAAMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKAKFGVRP 171 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L ++ +A+ IK K EN+ Sbjct: 172 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAAEIK-GKVGENLRAA 230 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + LS LV ++TDV + H L D + + R A + Sbjct: 231 LQRLPLSYDLVTIKTDVDL-----HTELSDG--------------IESLRRTAPKW---- 267 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E F S S + + +N+E P E+ Sbjct: 268 ---AQLVVDFKRWGFRTWLKEAESRMHEAADGDLFGSDSIGEQAALNAE-VPS----EKQ 319 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +L+ P D Y + + + KL + T ++DA ++ + I+I+ Sbjct: 320 PELAPTPEKLD-YQAVTTEAQLAALLDKLSQADTIGIDTETTSLDAMNASLVGISIA--- 375 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E I+I V S + + +++L LK EN KIG N+KYD+ Sbjct: 376 ------FQAGEAIYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 427 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 428 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 486 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G+QI Sbjct: 487 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 545 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 546 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 605 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 606 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 664 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 665 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 724 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG+ E VS + RR+AKTINF +IYG+ + LA L I A Sbjct: 725 AAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISA 784 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK G+VET+FGRR++ +I + ++ R ERAAI Sbjct: 785 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNTNARAGAERAAI 844 Query: 889 NAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTAS 941 NAP+QG+A+D+ +RAMI V + L D L +K+++Q+HDELV EV E E+ Sbjct: 845 NAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVK 904 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M K + L VPL + V NW+E Sbjct: 905 EKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 935 >gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] Length = 897 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 355/976 (36%), Positives = 539/976 (55%), Gaps = 92/976 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RA++A P L+ G P AI G NML KL E + AV+FD Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+++YP YKA+R I + L Q+ + + G I G EADD+I T Sbjct: 59 AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQ 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +K+ + + I + DKD+ QLV+ LYD++K D+ V++K+ I P +M+ AL Sbjct: 119 KLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPGIP +G KTA LQ+Y N++ I+ N +IK K EN+ + +LS +L Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 ++ D+ + + +E L + + LI EF L+ D D ++I+ V Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIKIVT--- 288 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + + +AIE Sbjct: 289 SQAQAADVAIE------------------------------------------------- 299 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I + + +LE S +F TD+++ + + + ++ K+ +F + Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 L V Q G +L LK F + +K+ HN K+D+ VL +Y I + G Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540 +D M+M+YVL S HD+ S++++ L +YT I + K +D++ V + Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTA--IAGTGKQQQTLDQVDIEIVAK 465 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++++ +L+ + L +K+L +Y L+ P+ +++QME TG++ID L Q S Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 A + ++ LE Y+L+G++FNLSSP QL +ILF KL P KT GQ T+ + L Q Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + D I I+++R LSK+K+TY D LP ++ RVHT Y+ T+TGRL+S +PN Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPIK+ G+KIR AFI+ +++ADYSQIELRI+AH++K L +VF +LDIH Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHS 703 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI YF+R+ Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 P + EY+ K F +QNGYVETI GRR++ EINS RN ERAAINAP+QG+AADI Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823 Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 ++AMI+V+ + +++ KM++Q+HDELVFEV + ++ I ME A + L Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879 Query: 959 RVPLKVNIKVSNNWQE 974 VPL+VN+ +W + Sbjct: 880 NVPLEVNVDSGKSWDQ 895 >gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19] gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19] Length = 921 Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust. Identities = 357/988 (36%), Positives = 555/988 (56%), Gaps = 91/988 (9%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA P ++ K G+ +AI GF N L +L K +H AV Sbjct: 3 LFLIDAYALIYRSYYAFIKNPRINSK--GVNTSAIFGFINSLEDVL----KRENPTHIAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E + YKA R + PE++ +P+++ +A+ IP +E+ +EADD+I T Sbjct: 57 AFDPKGPTFRHEAFEQYKAQREETPEVIRQSVPIIKEIIEAYNIPILEVPRYEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGIPP-EKM 179 + AEKEGF V +++ DKD QLVS +Y E + + V+ K+G+ E++ Sbjct: 117 VSKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPKFGGDYEIMGVPEVLNKYGLTSTEQV 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYA 237 + L L GD+ DNIPG PG+G KTA LL E+G++EN+L N ++K QKK+ E E A Sbjct: 177 IDLLGLMGDASDNIPGCPGVGEKTAQKLLTEFGSIENLLANTDKLKGAQKKKVE---ENA 233 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E S+ L ++TDVPI + E N RL LEF IN++++ AA Sbjct: 234 EQIHFSKFLATIKTDVPIEFDAARCVREKPNEERLTEIYTELEFRTFINKLSSE-PVKAA 292 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL----E 353 PV D+ AI T + + + S L+D S TP +L E Sbjct: 293 PKGPVQGDL-------FAIFT----PESTEEPKKSILTDLKS------TPHNYYLTDTEE 335 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 + L+++ + + + +F TD +D + + ++ + Sbjct: 336 KQADLARFLLGQEFF----------------------AFDTETDGIDPLKAGLVGMSFAV 373 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 + E ++ + ++ + + +++ +N LKIG NIK+D Sbjct: 374 KEN--------EAWYVPVPANSVEAA--------KVVERFSPALQNPKSLKIGQNIKFDI 417 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528 LVL +Y + + G D M+ Y+L+ H + +A+ +L Y +E++ + K+ + Sbjct: 418 LVLRKYNVKVAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYQTVHIEELIGPKGKNQL 476 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + + Q+ E+A E+++V L+L P+L E L ++ ++ P+I V+ +ME TG+ Sbjct: 477 SMRNVPVEQIAEYAAEDADVTLKLKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGV 536 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647 +D LKQ S E++ ++ LE+ +Y+L+G +FN++S KQ+G+ILF +LK AK TKT Sbjct: 537 TLDTVALKQSSGELTASMNKLEQEVYELAGTEFNINSTKQVGEILFDRLKLDEKAKKTKT 596 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G + T+ LE++ +PII +LE+R L K+ STY D+LP IN +T ++HT ++ A Sbjct: 597 GGYSTSEDVLEKLRS-KHPIIGKLLEYRGLKKLLSTYIDALPELINPQTGKIHTSFNQAV 655 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITP 766 T TGRL+S PNLQNIP++ DLG++IR+AFI L SADYSQIELRI+AH++ Sbjct: 656 TSTGRLSSTNPNLQNIPVRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPH 715 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 + + F++ DIH AA+I+G+ +EKV+ MRR AKT NF IIYGIS F LA +L IPRS Sbjct: 716 MIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIYGISVFGLAERLGIPRS 775 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 E+ + I YF +P I EY+E++ ++ GYVETIF R+ +INS + +R ER Sbjct: 776 ESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAERN 835 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAPIQGSAADI + AM+ +++ E+ L +KM+LQ+HDEL F + +EE +I++ Sbjct: 836 AINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNIYKEEAEEVKKIVLE 895 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME + L+VPL + NW E Sbjct: 896 EMENV----MKLQVPLIADCGEGENWLE 919 >gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1] gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1] Length = 947 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 342/985 (34%), Positives = 532/985 (54%), Gaps = 55/985 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L L+DGSS++YRA++A P L R G P + G + +LQ RKE A + Sbjct: 1 MSNSKTLVLIDGSSYLYRAYHAMPDL-RAEPGNPESPATGAIRGMINMLQAIRKEVAADY 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 +FD TFR+ +YP+YKA+R +P+ L Q+ + + G P + IQG EADD+ Sbjct: 60 AVCVFDTSGPTFRDTLYPEYKAHRSPMPDDLRSQIEPIHEVVRLLGWPVLAIQGVEADDV 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T A +G V I S DKDL QLV + DT+ ++ D+ V ++G+PP +M+ Sbjct: 120 IGTLAKTAAAQGVNVVISSGDKDLSQLVDSHIMVMDTMSGKRRDVAGVTAEFGVPPTQMI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 QAL GD++DN+PG+ +G KTA L E+G+L+ ++ A IK +N+ + + Sbjct: 180 DYQALVGDAVDNVPGVSKVGPKTAVKWLAEHGSLDGLIAAADGIKGVAG-QNLRDAIASG 238 Query: 241 RL--SRKLVMLRTDVPITIPLEHLILEDCNGPR------LISFLKALEFTKLINRVATTY 292 +L SR+LV ++TD ++ + L + D PR L F + F L + Sbjct: 239 QLALSRQLVTMKTDCDLSAEVPTLPVLDALAPREPDTAPLRDFYERYGFKGLARMLG--- 295 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 A EP L+ K A + D+ T +Q + SD + Sbjct: 296 ---GAAPEPDALEAVKAGRK-PAAKPRADQSTGDMFAQEQAESDDATT------------ 339 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 + + Q P++ Y ++ + QW+ K+ + T ++D ++ + I++S Sbjct: 340 -EAEAVQQRPLD---YDVVLTWEAFDQWLAKINAAELTALDTETTSLDEMRAEIVGISLS 395 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 +I L H D+ + E+L LK + E+ K+G ++KYD Sbjct: 396 VEPGA--------AAYIPLR-HAGPDAP-EQLPADEVLQRLKPWLEDAARPKLGQHVKYD 445 Query: 473 KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSI 528 + V GI + G+ D ML SYVL+ R H +AS+A + + T +++ I Sbjct: 446 RHVFANAGIEVHGYVHDTMLQSYVLEVHRP-HGLASLALRHTNRTGISYEDLCGKGAHQI 504 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITG 587 P ++ + +A E+++ L + +L P+L + L VYE L+ + + ++E G Sbjct: 505 PFAQVPVDKAAAYACEDADQTLDVHRVLWPQLQANDGLRGVYE-LEIATSEALFRIERNG 563 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + ID L + S ++ + ++ LE+ YD++G+ FNL+SPKQLG+I F KL P KT T Sbjct: 564 VLIDAATLARQSNDLGQRIVQLEQEAYDIAGQPFNLASPKQLGEIFFDKLGMPVVKKTAT 623 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + LE++ D P+ +LE R LSK+K TY D L RT RVHT Y+ A Sbjct: 624 GARSTDEEVLEKL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQLALPRTGRVHTHYAQAV 682 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 +TGRL+S +PNLQNIPI+T G+++R AFI+ P + SADYSQIELRI+AH++ L Sbjct: 683 AVTGRLSSNDPNLQNIPIRTPEGRRVREAFIAAPGHVIASADYSQIELRIMAHLSGDESL 742 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F D+HR A+E+F V +E+VS + RR+AK INF +IYG+S F LA L I Sbjct: 743 LRAFHEGRDVHRATASEVFNVELEQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKA 802 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 AA YI RYF R+PG+ Y+++T F R +GYVET+FGRR++ +IN + ER A Sbjct: 803 AAAYIDRYFQRYPGVKRYMDETVEFARDHGYVETVFGRRLYLVDINGGSGPRKKAAERQA 862 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AAD+ ++AM++V L+ + ++++Q+HDELVFE+PE E S + Sbjct: 863 INAPMQGTAADLIKKAMVAVQAELDARQSEVRVIMQVHDELVFELPEGE----SDWVRTE 918 Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972 + + +L+VPL + + NW Sbjct: 919 IPRLMAGVADLKVPLLAEVGLGPNW 943 >gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG] gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG] Length = 897 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 352/976 (36%), Positives = 539/976 (55%), Gaps = 92/976 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RA++A P L+ G P AI G NML KL E + AV+FD Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+++YP YKA+R I + L Q+ + + G I G EADD+I T Sbjct: 59 AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +K+G+ + I + DKD+ QLV+ LYD++K D+ V++K+ I P +M+ AL Sbjct: 119 NLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPGIP +G KTA LQ+Y N++ I+ N +IK K EN+ + +LS +L Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 ++ D+ + + +E L + + LI EF L+ D D ++I+ V Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIKIVT--- 288 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + + +AIE Sbjct: 289 SQAQAADVAIE------------------------------------------------- 299 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I + + +LE S +F TD+++ + + + ++ K+ +F + Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 L V + + +L LK F + +K+ HN K+D+ VL +Y I + G Sbjct: 356 QHRYLGVPQQLE-------LEFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540 +D M+M+YVL S HD+ S++++ L +YT I + K +D++ V + Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTA--IAGTGKQQQTLDQVDIEIVAK 465 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++++ +L+ + L +K+L+ +Y L+ P+ +++QME TG++ID L Q S Sbjct: 466 YAAEDADITFRLFNYFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQS 525 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 A + ++ LE Y+L+G++F LSSP QL +ILF KL P KT GQ T+ + L Q Sbjct: 526 ASLETSIKELESKCYNLAGQEFKLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + D I I+++R LSK+K+TY D LP ++ RVHT Y+ T+TGRL+S +PN Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPIK+ G+KIR AFI+ +++ADYSQIELRI+AH++K L + F +LDIH Sbjct: 644 LQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHS 703 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI YF+R+ Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 P + EY+ K F +QNGYVETI GRR++ EINS RN ERAAINAP+QG+AADI Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823 Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 ++AMI+V+ + +++ KM++Q+HDELVFEV + ++ I ME A + L Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879 Query: 959 RVPLKVNIKVSNNWQE 974 VPL+VN+ +W + Sbjct: 880 NVPLEVNVDSGKSWDQ 895 >gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 929 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 349/984 (35%), Positives = 544/984 (55%), Gaps = 76/984 (7%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + I+R +YA P ++ K G+ +AI GF N L +++ RKE AV Sbjct: 4 LFLLDAYALIFRGYYAFIKNPRINSK--GMNTSAIVGFMNSLLEVI---RKEQ-PHLLAV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD R I+ YKANR + PE + +P + +A IP IE +G+EADDII T Sbjct: 58 CFDKGGSQQRLAIFDQYKANREETPEAIRFAIPYIHQILKAMQIPIIEKEGYEADDIIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGI-PPEK 178 AEK+G+ V +++ DKD QLVSP +Y + K +E V + +G+ PE+ Sbjct: 118 LAKQAEKQGYTVYMVTPDKDYGQLVSPNIFMYKPARGGKDTEIWGVEEVKENFGVDTPEQ 177 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ L + GD++DNIPG+PG+G KTA LL+E+G++EN+L N ++K K RENI + Sbjct: 178 VIDLLGMMGDAVDNIPGLPGVGEKTAQKLLKEFGSMENLLANTDKLK-GKLRENIQANKD 236 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 LS+ L + DVP++ + L +I LEF ++ + + + Sbjct: 237 KGILSKTLARIILDVPVSFDEKDFELSSPKMEEIIPLFDQLEFRTMLTTLQKAFTKEETQ 296 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 + T + I T D ++ ++RL+ + Sbjct: 297 PNLFSIGQKATNSSMITNPTLFDMES---------------------------IKRLKTI 329 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 + P Y + +++ + +L F T +++ ++ + +A+S K Sbjct: 330 KEVP---HEYQLLTTQTEVEALLPELLAQKEICFDTETTSLNEMEAQIVGLALSYEIHKG 386 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 E +L K+ LK FFENE LKIG N+KYD +L Sbjct: 387 YYILFPEDF----------------SLAKQWFLLLKPFFENESILKIGQNLKYDFKILAN 430 Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPIDKI 533 YGI ++G F D M+ Y+L+ H++ +++ +L Y+ I K K + + + Sbjct: 431 YGIEVKGEFFDTMIAHYLLNPDMR-HNMDLLSEAYLGYSPISIETLIGKKGKGQLTMRAV 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 +E+A+E+++V LQL + P L +++L ++ +++ P+++V++QME GI++D Sbjct: 490 PAELQKEYAVEDTDVTLQLKHVFLPLLEKDQMLSLFRKVEAPLVEVLAQMEYEGIRVDTH 549 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF-TKLKFPSGAKTKTGQWKT 652 L Q+S EI+ +L+ LE+ I+ + E FNLSSPKQLGDILF KTKTGQ+ T Sbjct: 550 FLAQLSKEIAADLIGLEKTIFSQAEESFNLSSPKQLGDILFEKLKLLSKPKKTKTGQYAT 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + L ++ + I+ N+LE+R L K++STY ++LP +N T R+HT + A T TGR Sbjct: 610 SEEVLSEL-ASKHEIVANVLEFRALQKLQSTYIEALPREVNPHTGRIHTTFMQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQV 770 L+S +PNLQNIPI+T G +IR+AF+ P + L+SADYSQIELRI+A +++ + + Sbjct: 669 LSSNQPNLQNIPIRTPRGSQIRKAFV-PRNEDYTLLSADYSQIELRIIAALSEEDHMIEA 727 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F DIHR AA++FGV +E V+ + R HAKT+NF IIYG+S L+ Q + RS++ + Sbjct: 728 FLEGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVSAIGLSQQTSLSRSQSKE 787 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 I Y+ +P + YIEK F R++GYV+TI GRR + ++ S +R ER A+NA Sbjct: 788 LIDTYYQTYPKLKTYIEKQIFFAREHGYVQTILGRRRYLPDVYSRNQVVRGAAERNAVNA 847 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI + AM+ + + ++ LAT+MLLQ+HDEL+F+VP++E+ A +I ME Sbjct: 848 PIQGSAADIIKIAMVRIAQRIQKEGLATRMLLQVHDELLFDVPKKELEVAKALIREEMEN 907 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL V I NNW E Sbjct: 908 AY----TLIVPLIVEIGTGNNWLE 927 >gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112] gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112] gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] Length = 897 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 352/976 (36%), Positives = 540/976 (55%), Gaps = 92/976 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RA++A P L+ G P AI G NML KL E + AV+FD Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+++YP YKA+R I + L Q+ + + G I G EADD+I T Sbjct: 59 AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQ 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +K+G+ + I + DKD+ QLV+ LYD++K D+ V++K+ I P +++ AL Sbjct: 119 KLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQIIDYLALV 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPGIP +G KTA LQ+Y N++ I+ N +IK K EN+ + +LS +L Sbjct: 179 GDTSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 ++ D+ + + +E L + + LI EF L+ D D ++I+ V Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIKIVT--- 288 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + + +AIE Sbjct: 289 SQAQAADVAIE------------------------------------------------- 299 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I + + +LE S +F TD+++ + + + ++ K+ +F + Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 L V Q G +L LK+ F + +K+ HN K+D+ VL +Y I + G Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540 +D M+M+YVL S HD+ S++++ L +YT I + K +D++ V + Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYT--AIAGTGKQQQTLDQVDIEIVAK 465 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++++ +L+ + L +K+L+ +Y L+ P+ +++QME TG++ID L Q S Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQS 525 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 + ++ LE Y+L+G++FNLSSP QL +ILF KL P KT GQ T+ + L Q Sbjct: 526 VSLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + D I I+++R LSK+K+TY D LP ++ RVHT Y+ T+TGRL+S +PN Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPIK+ G+KIR AFI+ +++ADYSQIELRI+AH++K L + F +LDIH Sbjct: 644 LQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHS 703 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI YF+R+ Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 P + EY+ K F +QNGYVETI GRR++ EINS RN ERAAINAP+QG+AADI Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823 Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 ++AMI+V+ + +++ KM++Q+HDELVFEV + ++ I ME A + L Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879 Query: 959 RVPLKVNIKVSNNWQE 974 VPL+VN+ +W + Sbjct: 880 NVPLEVNVDSGKSWDQ 895 >gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] Length = 926 Score = 566 bits (1460), Expect = e-159, Method: Compositional matrix adjust. Identities = 354/979 (36%), Positives = 547/979 (55%), Gaps = 79/979 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAFYA LS DG P NA+ G ML L R E A + AV+FD Sbjct: 14 LLLVDGSSYLYRAFYALTHLSAP-DGTPTNAVYGVLKMLKSL----RAEQPADYCAVVFD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+ ++PDYKA RP +P+ L PQ ++ + G ++I EADD+I T Sbjct: 69 AKGKNFRHALFPDYKATRPPMPDDLRPQAEMLPELVELMGWKVLKINDVEADDVIGTLAV 128 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + V I + DKD+ QLV+ L +T+K E +D V++K+G+ PE++ AL Sbjct: 129 QAAAQNMNVIISTGDKDMAQLVNTQITLVNTMKNETLDSAGVMQKFGVKPEQIRDFLALM 188 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD +DN+PG+ G KTAA L E+G+L+ I+ A K K EN+ LS +L Sbjct: 189 GDKVDNVPGVEKCGEKTAAKWLAEFGSLDEIMRRADEFK-GKIGENLRAALPQLPLSYEL 247 Query: 247 VMLRTDVPI--TIP--LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 V ++TDV + ++P L+ L ++ N +L+ + L F + Sbjct: 248 VTIKTDVDLHESLPNGLDDLARQNPNWQQLVPRFRELGFKTWLKE--------------- 292 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 EN+ +AI D T F Q I K+F E ++L+ Sbjct: 293 ------AENQ-LAIGETGDLFATPAAPVFR----QPENI-------KIFDELPKELN--- 331 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 Y + ++ + V +L++ T+++D +K + I+++ F Sbjct: 332 -----YQVVTTSEQLANLVVRLQSCRQIGLDTETNSLDPMTAKLVGISMA---------F 377 Query: 423 KV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 + ++I ++ HT + +EI LK F E+++ KIG N+KYD+ + +GI Sbjct: 378 AAGDAVYIPVA-HTLAEQLD----WQEISGSLKPFLEDKNLAKIGQNLKYDQHIFKNHGI 432 Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQ 537 ++G D ML SY+++S SH++ +A +WL + + + + I ++ +Q Sbjct: 433 DLQGIAGDAMLASYIVES-HLSHNLDDLAMRWLGLETISYESLCGKGAKQISFADVNVAQ 491 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E+A ++++ L++ LR ++ +++ +YE ++ P+ V+ QME G+ +D L Q Sbjct: 492 ATEYACQDADFALRIEQHLRTQMDAQQI-EIYENMELPVAQVLFQMERAGVHLDCAELAQ 550 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQ 655 S E+ LL LE+ YDL+G+ FNL+SPKQL +ILF +L P+ KT G + T Sbjct: 551 QSTELGTELLQLEQQAYDLAGQPFNLNSPKQLQEILFNQLGIPTKGVKKTAKGGYSTDES 610 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ D P+ K IL+ R L+K+KSTY D LP IN +T RVHT Y+ A +TGRLAS Sbjct: 611 VLEKL-ADDYPLPKLILQNRSLAKLKSTYTDKLPEMINPQTGRVHTNYAQAVAITGRLAS 669 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L F+N+ Sbjct: 670 NNPNLQNIPIRTKQGRRVRRAFNAPDGYLIVSADYSQIELRIMAHLSGDATLQAAFQNNE 729 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+HR AAE+FGV EK++ + RR+AKTINF +IYG+ + LA L I AA +IKRY Sbjct: 730 DVHRRTAAEVFGVAPEKITLEQRRYAKTINFGLIYGMGEYGLAKSLGIDNVSAAMFIKRY 789 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+ G+ EY+++TK +Q G+VET+FGR+++ +I+S + R ERAAINAP+QG+ Sbjct: 790 FARYTGVAEYMQRTKEHAQQFGFVETLFGRKLYLPDIHSNHAMKRAGAERAAINAPMQGT 849 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 A+D+ ++AMI V K L + K +++++Q+HDELV EV E E+ + M + Sbjct: 850 ASDLIKKAMIDVSKFLMNQK--SRLVMQVHDELVLEVHESELDWIQIKLPEIMSQVGAEV 907 Query: 956 INLRVPLKVNIKVSNNWQE 974 +N VPL + V NW + Sbjct: 908 LN--VPLLAEVGVGKNWDD 924 >gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 884 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 336/927 (36%), Positives = 521/927 (56%), Gaps = 67/927 (7%) Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H AV+FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EAD Sbjct: 12 THAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEAD 71 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+I T AEK G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE Sbjct: 72 DVIGTLAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPDEVVNKYGVPPEL 131 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRREN 232 ++ AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K Sbjct: 132 IIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGK 191 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 + + + A LS KL ++TDV + + E L ++ L+ K EF + V Sbjct: 192 LAQNKDVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGK 251 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 A +P T + I+ S S+ + ++ E Sbjct: 252 WLQAKGAKPAAKPQET-----VVID--------------ESPSEPAAALSYE-------- 284 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 +Y I++ ++ W++KL+ +F TD++D + + ++ + Sbjct: 285 --------------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA 330 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 ++ V ++D S+ + L LK E+E K+G N+KYD Sbjct: 331 -IEPGVAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYD 380 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528 + VL YGI +RG D ML SY+L+S HD+ S++ +WL + T ++I K+ + Sbjct: 381 RGVLQNYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQL 440 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITG 587 ++I+ + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G Sbjct: 441 TFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNG 500 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 ++ID +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K KT Sbjct: 501 VKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPG 560 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T+ + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A Sbjct: 561 GAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV 619 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L Sbjct: 620 TATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGL 679 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR E Sbjct: 680 LTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKE 739 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A Y+ YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAA Sbjct: 740 AQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAA 799 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAP+QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H Sbjct: 800 INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRI-HQ 858 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 + + C + VPL V + NW + Sbjct: 859 LMENC---TRIDVPLLVEVGSGENWDQ 882 >gi|332531416|ref|ZP_08407320.1| DNA polymerase I [Hylemonella gracilis ATCC 19624] gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624] Length = 924 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 347/981 (35%), Positives = 531/981 (54%), Gaps = 70/981 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M ++ L LVDGSS++YRAF+A P L R G P + G + +LQ+ RKE A + Sbjct: 1 MSEKKTLLLVDGSSYLYRAFHAMPDL-RAVPGDPASPPTGAIRGMINMLQSLRKEVTADY 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A +FD TFR+ +YP+YKA R +P+ L Q+ + + G +++ G EADD+ Sbjct: 60 AACVFDAKGPTFRDALYPEYKAQRAPMPDDLRAQIEPIHQVVRLMGWAVLDVPGVEADDV 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T A +G V I S DKDL QLV+ + DT+ ++ D+ V ++G+PP MV Sbjct: 120 IGTLAVAAAAQGVEVFISSGDKDLSQLVNEHIVIVDTMNGKRRDVAGVTAEFGVPPALMV 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 Q L GD++DN+PG+ +G KTAA L EYG+L+ ++ ++ IK EN+ + + Sbjct: 180 DYQTLVGDAVDNVPGVDKVGPKTAAKWLTEYGSLDALVARSAEIKGAAG-ENLRKALDWL 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 R+L+ ++TD D NG + L AL+ ++ + D A ++ Sbjct: 239 PTGRQLLTIKTDC------------DLNG--WVPGLPALDAVRV-------GEPDNAALK 277 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 KG+A ++ L D+ + + TP Sbjct: 278 TFYEQYGF---KGLAKALADKASAAASAAEAPGLFDEPAPV----TPS------------ 318 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 I +Y I++ + W+ +++ + T ++D ++ + I+ S Sbjct: 319 --ITQVAYDTILDWEAFNTWLARIDAAELVALDTETTSLDEMVAEIVGISFSVTPG---- 372 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 E +I L +H D+ + E+L+ LK + EN K+G ++KYD+ V +G Sbjct: 373 ----EAAYIPL-MHDYPDAPAQ-LPRDEVLAKLKGWLENPAKKKLGQHVKYDRHVFANHG 426 Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDS 536 I ++G+ D ML SYVL+ H +AS+A++ L +++ IP ++S Sbjct: 427 IEVQGYVHDTMLQSYVLEV-HKPHGLASLAERHLGRKGINYEDLCGKGAKQIPFSQVSID 485 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-----KLLHVYERLDKPMIDVVSQMEITGIQID 591 + E++ E+S+ L + L P+L + KL +YE L+ + + ++E G+ ID Sbjct: 486 KAAEYSCEDSDQTLDVHRTLWPRLEKDAQEGGKLRFIYE-LEIASSETLYRIERNGVLID 544 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L Q S E+ + +L LE+ Y+L+G+ FNL SPKQ+G+I F KL P KT TG Sbjct: 545 APTLAQQSHELGQRILQLEQEAYELAGQPFNLGSPKQIGEIFFGKLGLPIVKKTATGAPS 604 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + LE++ D P+ ILE R LSK+K TY D L T RVHT Y+ A +TG Sbjct: 605 TDEEVLEKL-ADDYPLPAKILEHRGLSKLKGTYTDKLAQMALPGTGRVHTHYAQAVAVTG 663 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+T G+++R AFI+PP + SADYSQIELRI+AH++ L F Sbjct: 664 RLSSNDPNLQNIPIRTPEGRRVREAFIAPPGCLIASADYSQIELRIMAHLSGDAALLLAF 723 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + +D+HR A+E+FGV V+ + RR+AKTINF +IYG+S + LA L I + A +Y Sbjct: 724 HDGMDVHRATASEVFGVPTSAVTSEQRRYAKTINFGLIYGMSSYGLAKSLGIDNTAAKNY 783 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I+RYF RF G+ Y+++T+ + GYVET+FGRR++ EINSP R ERAAINAP Sbjct: 784 IERYFDRFAGVKRYMDETRASAKAKGYVETVFGRRLYLPEINSPNGPRRGGAERAAINAP 843 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG+AAD+ + +M +V + L+ TKM++Q+HDELVFEVPE E+ + + M Sbjct: 844 MQGTAADLIKLSMNAVQRVLDAEGRKTKMIMQVHDELVFEVPENEVDWLKREVPKLMAGV 903 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 LRVPL + V NW Sbjct: 904 A----QLRVPLLAEVGVGVNW 920 >gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54] Length = 948 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 344/973 (35%), Positives = 529/973 (54%), Gaps = 79/973 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R G P A+ G NML KL+ + + E + A IFD Sbjct: 48 LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVSDYKAE----YAACIFD 102 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++YP+YK++RP +PE L Q+ + A +A G P + I+G EADD+I T Sbjct: 103 ARGKTFRDDLYPEYKSHRPPMPEDLAAQIEPIHRAVRALGWPVLAIEGVEADDVIGTLAC 162 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + G + + DKDL QLV+ L +T+ E +D V+ K+G+ P+++V L Sbjct: 163 RAAERGVHTVVSTGDKDLAQLVNSHVTLVNTMSGEVLDEAGVLNKFGVAPDRIVDYLMLV 222 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ +G KTAA + E+G+++ ++ A IK N+ E L+R+L Sbjct: 223 GDTVDNVPGVTKVGPKTAAKWISEFGSIDKLVEGAEGIKGVAG-NNLREAIPNFPLTRQL 281 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + ++ C DCD V D+ Sbjct: 282 LTVK----------------C-------------------------DCDLTGHVDSVDDL 300 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 T ++ A TE+ +T L D T ++E+ P ++ P D Sbjct: 301 -TPRDRDDATLTELYERYGFRTW----LRDLTG--DAERVPTG-DARVAAEVPAAPTELD 352 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I + W+++++ + T ++D +K + ++++ Sbjct: 353 -YRIIADWPAFDAWMEQVDKAALVAVDTETTSLDEMQAKLVGLSMAVAPGV--------A 403 Query: 427 IFIDLSVHTSQDSTGKNTLTK-EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 +I ++ H D G L K E+L+ L+ + E+ K+ H+ KYD V GI + G Sbjct: 404 CYIPVA-HRGPD--GATQLPKDEVLARLRPWLEDASRAKLLHHAKYDTHVFANEGIRLAG 460 Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEH 541 ED ML +YVL+S R + +AQ++L + +++ I D+++ + + Sbjct: 461 IAEDTMLQAYVLESHRGV-GLNDLAQRYLGRSGVSYEDLCGKGAKQIGFDEVAVDKAGHY 519 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 A E+++ LQL +LRP++ + L L+ + V++ +E G+++D L + S + Sbjct: 520 AAEDADFTLQLHQVLRPQVAADAGLERIYLLEMQVSAVLTTIERNGVKVDAAELGRQSHK 579 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + + +L LE+ Y+L+G+ FNL+SPKQLG+ILF +++ P KT G T + L ++ Sbjct: 580 LGQEMLQLEQKAYELAGQPFNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLSKL- 638 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ + +LE+R LSK+KSTY D LP IN T RVHT YS A+ +TGRLAS +PNLQ Sbjct: 639 AQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPDTGRVHTHYSQAAVITGRLASSDPNLQ 698 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T+ G+++R AFI+ L+SADYSQIELRI+AH++ L + F DIHR Sbjct: 699 NIPVRTEAGRRVREAFIAE-QGLLLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRAT 757 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A+E+FGV + VS + RR AK INF +IYG+ F LA+ L I R A YI RYF R+PG Sbjct: 758 ASEVFGVALADVSSEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFARYPG 817 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E T+ R+ GYVET+FGRR+ EI R ERAAINAP+QG+AAD+ + Sbjct: 818 VAMYMENTRRVAREQGYVETVFGRRLQLPEIRGASGPRRQGAERAAINAPMQGTAADLIK 877 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AM++V LE KL T+M++Q+HDELV E P+ E+ Q + M LRVP Sbjct: 878 MAMVAVQDWLEAEKLQTRMIMQVHDELVLEAPDAELELVKQTLPRLMCNVA----ELRVP 933 Query: 962 LKVNIKVSNNWQE 974 L + V NW++ Sbjct: 934 LVAEVGVGKNWEQ 946 >gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640] gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06] Length = 932 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 360/990 (36%), Positives = 540/990 (54%), Gaps = 76/990 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKES 56 M L LVDGSS++YRA++A + R++ DG P A+ G NML +L R E Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHA---MLRQNLTAPDGAPTGALYGVLNMLRRL----RLEY 53 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEI 112 + AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + + Sbjct: 54 PHDYCAVVFDAKGKNFRHQMFSEYKATRPPMPDDLRPQAEALPELVRLT----GWPVLVV 109 Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172 EADD+I T G V + + DKD+ QLV+ L +T+ E +DIE V +K+ Sbjct: 110 GQVEADDVIGTLAKQGVGHGLQVIVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKF 169 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 G+ P+++ ALTGD +DN+PG+ G KTA L+ YG+L+ ++ +A+ IK K EN Sbjct: 170 GVRPDQIRDYLALTGDKVDNVPGVEKCGPKTAEKWLEAYGSLQGVMEHAAEIK-GKVGEN 228 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 + LS LV ++TDV + H L D L++L T Sbjct: 229 LRAALPRLPLSYDLVTIKTDVDL-----HAELSDG--------LESLRRT---------- 265 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ-KLF 351 A +V+D + E E + + + LS + I + TP ++ Sbjct: 266 ---APKWAQLVVDFKRWGFRTWLKEAE----SRMHEAADGGLSG-SDAIGGQATPAAEMP 317 Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411 ERL + + P D Y + + KL T ++DA ++ P+ I+I Sbjct: 318 SERLPEKAVAPEKLD-YQAVTTEAQFAALLDKLSQAEKIGIDTETTSLDAMNAAPVGISI 376 Query: 412 STLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 + F+ E ++I V S + + + +L LK EN KIG N+K Sbjct: 377 A---------FQAGEAVYI--PVGHSLTAAPEQLDLQYVLDRLKPHLENPALKKIGQNLK 425 Query: 471 YDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526 YD+ V GI++ G D ML SY+++S H + ++ +WL T + + Sbjct: 426 YDQHVFANCGIALNGIVGDAMLASYIIES-HLGHGLDELSGRWLGLETITYESLCGKGAK 484 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 I ++ E+A ++++ L+L LR ++ +K L +YE+++ P+ V+ +ME Sbjct: 485 QIGFADVAIGPATEYAAQDADFALRLEAHLRAQMD-DKQLEMYEKMELPVAQVLFEMERV 543 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--K 644 G+QID+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ K Sbjct: 544 GVQIDRAELARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKK 603 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 T G T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ R +RVHT Y+ Sbjct: 604 TAKGGISTNEDVLEQL-APDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKRVHTTYA 662 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 A +TGRLA PNLQNIPI+T+ G+K+RRAF +PP ++SADYSQIELRI+AH++ Sbjct: 663 QAVAITGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGD 722 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L F+N D+HR AAE+FG+ E VS + RR+AKTINF +IYG+ + LA L I Sbjct: 723 KTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGID 782 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 A ++I RYF R+PG+ EY+++ + GYVET+FGRR++ +I ++IR E Sbjct: 783 NLSAKNFIDRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLSDIRHTNANIRARAE 842 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 RAAINAP+QG+A+D+ +RAMI V + L D L +K+++Q+HDELV EVPE E+ + + Sbjct: 843 RAAINAPMQGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPEAELDLVKEKL 902 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A + L VPL + NW+E Sbjct: 903 PQMM--AAVDDGMLDVPLVAEVGAGMNWEE 930 >gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp. novicida GA99-3549] gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549] gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] Length = 897 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 354/976 (36%), Positives = 542/976 (55%), Gaps = 92/976 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RA++A P L+ G P AI G NML KL E + AV+FD Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+++YP YKA+R I + L Q+ + + G I G EADD+I T Sbjct: 59 AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +K+G+ + I + DKD+ QLV+ LYD++K D+ V++K+ I P +++ AL Sbjct: 119 NLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQIIDYLALM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPGIP +G KTA LQ+Y N++ I+ N +IK K EN+ + +LS +L Sbjct: 179 GDASDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 ++ D+ + + +E L + + LI EF L+ D D ++I+ Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIK------ 285 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 I TSQ Q + + E Sbjct: 286 -------------------IATSQA-----QAADVAIE---------------------- 299 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I + + +LE S +F TD+++ + + + ++ K+ +F + Sbjct: 300 -YITITTQTQLDDLIAELEKSDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 L V Q G +L LK+ F + +K+ HN K+D+ VL +Y I + G Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKRLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540 +D M+M+YVL S HD+ S++++ L +YT I + K +D++ V + Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYT--AIAGTGKQQQTLDQVDIEIVAK 465 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++++ +L+ + L +K+L+ +Y L+ P+ +++QME TG++ID L Q S Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQS 525 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 A + ++ LE Y+L+G++FNLSSP QL +ILF K+ P KT GQ T+ + L Q Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKMGLPPVKKTAKGQVSTSEEVLVQ 585 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + D I I+++R LSK+K+TY D LP ++ RVHT Y+ T+TGRL+S +PN Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPIK+ G+KIR AFI+ +++ADYSQIELRI+AH++K L + F +LDIH Sbjct: 644 LQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHS 703 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI YF+R+ Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 P + EY+ K F +QNGYVETI GRR++ EINS RN ERAAINAP+QG+AADI Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823 Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 ++AMI+V+ + +++ KM++Q+HDELVFEV + ++ I ME A + L Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879 Query: 959 RVPLKVNIKVSNNWQE 974 VPL+VN+ +W + Sbjct: 880 NVPLEVNVDSGKSWDQ 895 >gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493] gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493] Length = 902 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 354/984 (35%), Positives = 551/984 (55%), Gaps = 115/984 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS+++RA+YA P L+ + G P A+ G NML KL+ + + + AV+FD Sbjct: 16 LILIDGSSYLFRAYYALPPLTNRK-GQPTGAMYGVINMLRKLMVEYQPD----YVAVVFD 70 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 TFR+++Y YKANR ++P L Q+ PL + +A G P I +G+EADD+IAT Sbjct: 71 PKGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEI-IRALGFPLIIKEGYEADDVIATLA 129 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A+++G V + + DKDL Q+V+ L +T+ + ++ + V++K+G+PPEK++ L Sbjct: 130 KKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTL 189 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 TGD+ DNIPG+P +G KTA L +Y ++EN++ +A+ IK K + Sbjct: 190 TGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHANEIKGK--------------VGEN 235 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 L D+P L+ R+ T V+ D Sbjct: 236 LRACIDDLP-----------------------------LMRRLVT-----------VISD 255 Query: 306 INTTENKGIAIETEIDRDTTIK---TSQFSS-----LSDQTSKINSEQTPQKLFLERLQK 357 + EN I+TE +R+ I+ +F S L++Q K+ + Q Sbjct: 256 LPLEENPTDLIQTEKNREKLIELFTEYEFKSWLAELLANQDKKVAAFQ------------ 303 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I + K ++W++KL +F T +A +K + ++ + Sbjct: 304 ----------YATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPH- 352 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL--TKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 E ++ L D TG +E+L LK E+ + I N+KYD V Sbjct: 353 -------EAAYVPLG----HDYTGAPAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEV 401 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 L + G+++R D +L SYVL+S + HD+ ++A K+L +++ I + Sbjct: 402 LAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFN 461 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590 ++ + +A E+++V LQL L P + EK L V+E+++ P++ ++ +ME+ G+ + Sbjct: 462 HVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMKMEMRGVLV 521 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D +L+ S E+ + LE+ Y L+G +FNLSSPKQL IL+ +LK P KT GQ Sbjct: 522 DTAMLQAQSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ- 580 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 +TA+++ Q D P+ K ILE R L+K+K+TY D LP ++ ++R+HT Y+ T T Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S PNLQNIPI+T+ G+KIRRAFI+PP ++++ADYSQ+ELRI+AHI+K L + Sbjct: 641 GRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHISKDPSLIKA 700 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+ DIHR AAE+FGVN+E+V+P+ RR AK INF ++YG+S F L QL I R A + Sbjct: 701 FDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAKE 760 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI YF R+P +HEY++K + GYVET+FGRR++ +I++ R ERAAINA Sbjct: 761 YIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINA 820 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AADI + AMI V L+ + + +++Q+HDELVFEV E+++ I +ME+ Sbjct: 821 PMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKVIPQIKKAMEE 880 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A + L VPL V++ V NW E Sbjct: 881 A----VALSVPLVVDVGVGGNWDE 900 >gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 919 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 347/963 (36%), Positives = 533/963 (55%), Gaps = 76/963 (7%) Query: 40 GFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVR 99 G NML L+ SH AV+FD TFR+E++ YK++RP +P+ L Q+ + Sbjct: 3 GVLNMLKSLVAQVE----PSHIAVVFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLH 58 Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159 +A GIP I I+G EADD+I T A G V I + DKD+ QLV+ L +T+ Sbjct: 59 TIIKALGIPLISIEGVEADDVIGTLAVQAANAGKNVLISTGDKDMAQLVNDHIMLINTMN 118 Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219 +D E VI K+GIPPE ++ AL GD+ DNIPG+ G+G KTA LLQ G+L+ I Sbjct: 119 NTLLDREGVIDKYGIPPELIIDYLALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYA 178 Query: 220 NASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI 273 N ++ K + + A LS L ++TDV + + E L+++ L+ Sbjct: 179 NLDQVATLSFRGAKTLAPKLEAEKDAAALSYLLATIKTDVELEVTHEQLVVQPQKRDELV 238 Query: 274 SFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333 EF + +N V + AN PV T+N E +I + + + Sbjct: 239 ELFGRYEFKRWLNEV-----MNDAN--PV------TQNS----EEKI-------PNNYQA 274 Query: 334 LSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFK 393 + + +EQT ++ IN Y + + +Q W++K+ + + Sbjct: 275 TASVPQAVETEQT-----------FAKVEINRSRYETVTTMEQLQSWIEKINQVKLVAVD 323 Query: 394 IITDTMDAFHSKPIAIAIST---------LDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444 TD +D+ + + ++ L K+ + + + + ++ +T Sbjct: 324 TETDNLDSMSANLVGVSFGLANGDACYIPLTHKEQVTLEPQQSDLFAEQAEAETTTSFEL 383 Query: 445 LTKEI-----LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS 498 K++ L+ LK EN KIG NIKYD + +G+ + G D ML SY L+S Sbjct: 384 AKKQLNLTACLTELKPLLENADVKKIGQNIKYDLTIFANHGVQVEGVAFDTMLESYTLNS 443 Query: 499 -GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554 GR H++ +A ++L + +EI K+ + +DKI+ ++A E+++V ++L Sbjct: 444 TGR--HNMDELADRYLGHKTIEFEEIAGKGKNQLTLDKIAIDVASQYAAEDADVTMKLHQ 501 Query: 555 LLRPKLIVEK---LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611 +L P+L EK L+ ++ ++ P+++V+S++E G+ ID + L SAEI + L LE+ Sbjct: 502 VLAPEL--EKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQ 559 Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671 ++ +GE FNL+S KQL +ILFTKL P KT G T + L+++ + + K + Sbjct: 560 LVHSEAGEVFNLASTKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLL 619 Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731 +E R LSK+KSTY D LP IN++T RVHT Y A T TGRL+S +PNLQNIPI+ + G+ Sbjct: 620 MEHRGLSKLKSTYTDKLPLMINQKTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGR 679 Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791 +IR+AFI+ K+++ADYSQIELRI+AH+A + F DIHR AAEIFG+ ++ Sbjct: 680 RIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALD 739 Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851 +V+ + RR AK INF +IYG+S F L+ QL I R++A Y++RYF R+P + +++ + Sbjct: 740 QVTSEQRRSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRE 799 Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911 + GYVET+FGRR++ EI S + R ER AINAP+QG+AADI + AMI + K++ Sbjct: 800 SASEKGYVETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADIIKVAMIGIDKAI 859 Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 KM++Q+HDELVFEV EE + SQ+I MEKA I L+VPL + V +N Sbjct: 860 RGDD-NIKMIMQVHDELVFEVKEELVEHYSQLIKAEMEKA----IQLKVPLIAEVGVGDN 914 Query: 972 WQE 974 W E Sbjct: 915 WDE 917 >gi|330977284|gb|EGH77239.1| DNA polymerase I [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 921 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 348/995 (34%), Positives = 534/995 (53%), Gaps = 108/995 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++Y AF+A P L+ GLP A+ G NML L R++ S AV+FD Sbjct: 6 LVLVDGSSYLYPAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA LL Y NL+ + R K + E+ E Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVASLPIR-GAKTLAAKLEEHRE 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ I L+ L C P Sbjct: 240 MAFLSYELATIKIDVPLDIELDQL---HCGEP---------------------------- 268 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355 DRDT ++ +F S + + ++++ Q+L +E Sbjct: 269 ----------------------DRDTLMELYAELEFKSWIEDLQR-DAKRAGQELTVEE- 304 Query: 356 QKLSQYPINND---SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 P D +Y I+ W++KL+ +F ++ DA ++ + ++ + Sbjct: 305 ------PTVEDREAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA 358 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 + + + ++ + +D+ +L LK E+ K+G + K+ Sbjct: 359 -IQTHEAAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFA 408 Query: 473 KLVL--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEI 520 +L GI ++G D +L SYVLDS + HD S+ K+L++T +EI Sbjct: 409 INLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEI 468 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDV 579 + D+I+ Q +A E +++ L+L + +L + L V ++ P++ V Sbjct: 469 AGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPV 528 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 ++++E G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL Sbjct: 529 LARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGM 588 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 P +KT TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+ Sbjct: 589 PILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 HT Y A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+A Sbjct: 649 HTSYHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMA 708 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+A+ L F N LD+HR AAE+FGV +E V+ MRR AK INF +IYG+S F LA Sbjct: 709 HLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAK 768 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 Q+ + R ++ Y+ RYF R+PG+ Y+E+T+ + G+VETIFGRR++ +IN+ S+ Sbjct: 769 QIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSL 828 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AINAP+QG+AADI ++AM++V+ L++ L +++LQ+HDELV EV E+ + Sbjct: 829 RKGAERMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQ 888 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 S+ I M A L VPL V + V +NW E Sbjct: 889 VSEQIRPHMSGAA----ELAVPLLVEVGVGHNWDE 919 >gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] Length = 902 Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust. Identities = 354/984 (35%), Positives = 550/984 (55%), Gaps = 115/984 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS+++RA+YA P L+ + G P A+ G NML KL+ + + + AV+FD Sbjct: 16 LILIDGSSYLFRAYYALPPLTNRK-GQPTGAMYGVINMLRKLMVEYQPD----YVAVVFD 70 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 TFR+++Y YKANR ++P L Q+ PL + +A G P I +G+EADD+IAT Sbjct: 71 PKGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEI-IRALGFPLIIKEGYEADDVIATLA 129 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A+++G V + + DKDL Q+V+ L +T+ + ++ + V++K+G+PPEK++ L Sbjct: 130 KKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTL 189 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 TGD+ DNIPG+P +G KTA L +Y ++EN++ +A IK K + Sbjct: 190 TGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHAHEIKGK--------------VGEN 235 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 L D+P L+ R+ T V+ D Sbjct: 236 LRACIDDLP-----------------------------LMRRLVT-----------VISD 255 Query: 306 INTTENKGIAIETEIDRDTTIK---TSQFSS-----LSDQTSKINSEQTPQKLFLERLQK 357 + EN I+TE +R+ I+ +F S L++Q K+ + Q Sbjct: 256 LPLEENPTDLIQTEKNREKLIELFTEYEFKSWLAELLANQDKKVAAFQ------------ 303 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I + K ++W++KL +F T +A +K + ++ + Sbjct: 304 ----------YATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPH- 352 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL--TKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 E ++ L D TG +E+L LK E+ + I N+KYD V Sbjct: 353 -------EAAYVPLG----HDYTGAPAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEV 401 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 L + G+++R D +L SYVL+S + HD+ ++A K+L +++ I + Sbjct: 402 LAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFN 461 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590 ++ + +A E+++V LQL L P + EK L V+E+++ P++ ++ QME+ G+ + Sbjct: 462 HVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLV 521 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D +L+ S E+ + LE+ Y L+G +FNLSSPKQL IL+ +LK P KT GQ Sbjct: 522 DTAMLQAQSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ- 580 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 +TA+++ Q D P+ K ILE R L+K+K+TY D LP ++ ++R+HT Y+ T T Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S PNLQNIPI+T+ G+KIRRAFI+PP ++++ADYSQ+ELRI+AHI+K L + Sbjct: 641 GRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHISKDPSLIKA 700 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+ DIHR AAE+FGVN+E+V+P+ RR AK INF ++YG+S F L QL I R A + Sbjct: 701 FDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAQE 760 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI YF R+P +HEY++K + GYVET+FGRR++ +I++ R ERAAINA Sbjct: 761 YIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINA 820 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AADI + AMI V L+ + + +++Q+HDELVFE+ E+++ I +ME+ Sbjct: 821 PMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEMAEKDLEKVIPQIKKAMEE 880 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A + L VPL V++ V NW E Sbjct: 881 A----VALSVPLVVDVGVGGNWDE 900 >gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] Length = 897 Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust. Identities = 354/976 (36%), Positives = 538/976 (55%), Gaps = 92/976 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RA++A P L+ G P AI G NML KL E + AV+FD Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+++YP YKA+R I + L Q+ + + G I G EADD+I T Sbjct: 59 AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQ 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +K+ + + I + DKD+ QLV+ LYD++K D+ V++K+ I P +M+ AL Sbjct: 119 KLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPGIP +G KTA LQ+Y N++ I+ N +IK K EN+ + +LS +L Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 ++ D+ + + +E L + + LI EF L+ D D ++I+ V Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIKIVT--- 288 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 + + +AIE Sbjct: 289 SQAQAADVAIE------------------------------------------------- 299 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I + + +LE S +F TD+++ + + + ++ K+ +F + Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 L V Q G +L LK F + +K+ HN K+D+ VL +Y I + G Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540 +D M+M+YVL S HD+ S++++ L +YT I + K +D++ V + Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTV--IAGTGKQQQTLDQVDIEIVAK 465 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++++ +L+ + L +K+L +Y L+ P+ +++QME TG++ID L Q S Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 A + ++ LE Y+L+G++FNLSSP QL +ILF KL P KT GQ T+ + L Q Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + D I I+++R LSK+K+TY D LP ++ RVHT Y+ T+TGRL+S +PN Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPIK+ G+KIR AFI+ +++ADYSQIELRI+AH++K L + F +LDIH Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHS 703 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI YF+R+ Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 P + EY+ K F +QNGYVETI GRR++ EINS RN ERAAINAP+QG+AADI Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823 Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 ++AMI+V+ + +++ KM++Q+HDELVFEV + ++ I ME A + L Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879 Query: 959 RVPLKVNIKVSNNWQE 974 VPL+VN+ +W + Sbjct: 880 NVPLEVNVDSGKSWDQ 895 >gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25] gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25] Length = 929 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 349/989 (35%), Positives = 533/989 (53%), Gaps = 92/989 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L RK+ S FAV+FD Sbjct: 10 LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 64 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y +YKANRP +P+ + Q+ + + A G P + ++G EADD+I T Sbjct: 65 AKGGTFRDDMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR 124 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +DIE V +K+G+ PE+++ AL Sbjct: 125 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDIEGVKEKFGVAPEQIIDYLALM 184 Query: 187 GDSIDNIPGIPGIGYKTA-ALLLQEYGNLENI-----LINASRIKQKKRRENIL-EYAET 239 GDS DNIPG+PGIG KTA LL+ G L+ + ++ I+ K L E+ E Sbjct: 185 GDSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEEHKEM 244 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS +L ++ DVP+ + L+ L L + + +L+ LEF + + Sbjct: 245 AFLSYQLATIKIDVPLDVGLDDLHLIEPDREKLLELYTLLEFKSWFDEIQR--------- 295 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 D E K + ++ + ++++ DQ Sbjct: 296 -----DAKRVELKAAPVVEDVAEVAAPAEATYTTILDQA--------------------- 329 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 T DI W++KL +F T +DA ++ + ++ + Q + Sbjct: 330 --------------TFDI--WLKKLNDAKLFAFDTETTGIDAQQAQLVGVSFAV--QPHE 371 Query: 420 TSF-KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 ++ + +I +D+ +L LK E+ LK+G + K+D +L Sbjct: 372 AAYIPLTHAYIGAPEQLDRDT---------VLLALKPLLEDPTKLKVGQHAKFDMNILAN 422 Query: 479 --------YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526 +GI++RG D ML SYVL++ + HD+ S+A+K+L Y ++I Sbjct: 423 CAIGGDPAHGITVRGIAFDTMLESYVLNATATRHDMDSLAKKYLDYDTVAFQDIAGKGAK 482 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585 + D+I+ Q +A E+++V L+L L +L + L V ++ P++ V++++E Sbjct: 483 QLTFDQIALEQAGPYAAEDADVTLRLHQALFAQLSAIPSLASVLTDIEIPLVPVLARIER 542 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 G +D+DLL S E+ ++ LE ++++GE+FNL SPKQLG IL+ KL P KT Sbjct: 543 QGALVDKDLLGIQSIELGNKMVELERQAFEIAGEEFNLGSPKQLGAILYEKLGLPVLKKT 602 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 GQ T + L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Y Sbjct: 603 GKGQASTAEEVLAKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 662 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A TGRL+S +PNLQNIP++T G++IR+AFI+P K+++ADYSQIELRI+AH++K Sbjct: 663 AVAATGRLSSSDPNLQNIPVRTAEGRRIRQAFIAPKGYKMLAADYSQIELRIMAHLSKDE 722 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F ++LD+H AAE+F V + V+ RR AK INF +IYG+ +L + + Sbjct: 723 GLMNAFRHNLDVHTATAAEVFKVELGDVTSDQRRSAKAINFGLIYGMGAQKLGKDIGVDT 782 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 A YI YF R+PG+ EY+E+T+ GYVET FGRR++ +I+S K R ER Sbjct: 783 KTAKAYIDVYFARYPGVREYMERTRAQASDQGYVETFFGRRLYLPDIHSNKPQERAAAER 842 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAP+QG+AADI ++AM+ V L D L K++LQ+HDELV EV E+ + S+ I Sbjct: 843 TAINAPMQGTAADIIKKAMVLVDNWLTDSGLDAKVILQVHDELVLEVREDLVAEVSEKIR 902 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A L VPL V + V +NW + Sbjct: 903 EYMSAAA----QLDVPLLVEVGVGDNWDQ 927 >gi|148653845|ref|YP_001280938.1| DNA polymerase I [Psychrobacter sp. PRwf-1] gi|148572929|gb|ABQ94988.1| DNA polymerase I [Psychrobacter sp. PRwf-1] Length = 1022 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 359/999 (35%), Positives = 559/999 (55%), Gaps = 63/999 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS +++R ++A P GL NAI G N L K+++ +H AV FD Sbjct: 54 FVLVDGSYYLFRTYHALPKTMMTTQGLTTNAIRGTLNALLKVMRRYHP----THMAVCFD 109 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFR+ + +YKANRPK+ L Q+P + +A GIP + I+G EADDII T T+ Sbjct: 110 TKSPTFRHTMSEEYKANRPKMDPELAEQIPYIHRLVRALGIPLLRIEGAEADDIIGTLTH 169 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A +EG V I + DKD+MQLV+ L D+ + +D+ V +K+GI P +++ L L Sbjct: 170 RAIEEGHHVVISTGDKDMMQLVNDCVILEDSFAGKVVDVPAVEEKFGIKPNQIIDLLTLM 229 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I GIP +G KTA L +Y ++NIL NA IK K E ++E+ + R+L Sbjct: 230 GDASDGIKGIPSVGQKTAVKWLNQYQTVDNILANAHNIK-GKVGEKLVEFVDNIPRDRQL 288 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLK----ALEFTKLINRVATTYDCDAANIEPV 302 + T++ I E L + + + ++ L+ LEF N +A+ D N P Sbjct: 289 ATIVTNLDIGQDWEDLRI-NTDSSTFVAELRDLYSELEFK---NELAS---LDHPN-HPA 340 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER------LQ 356 +++ + E++ T++ + SS+ + N+ L+ L Sbjct: 341 NSSVHSVADSKADAESQAQVAKTLQHQKQSSIIEHIKNSNTHDKAWHTILDESAFDNLLN 400 Query: 357 KLSQYP-INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 KL P D+ T +N ++ Q I SF + +A++ P+A Sbjct: 401 KLQAAPYFAVDTETTSINWREAQ--------IVGLSFSV--QAHEAYY-LPLAHVDYNEP 449 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474 QK + K E L + + D L ++ +L+ LK EN + KIG ++KYD Sbjct: 450 QKKAKNKKEEAEQAKLLANATVDPLIAKQLDRDTVLAKLKPILENPNIGKIGQHLKYDAH 509 Query: 475 VLHRYGISM----RGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKS 526 VL +YGI + + +E D ML SYVL++ + H + +A+ +L + + +++ Sbjct: 510 VLSKYGIELNMSPKNWEMDTMLASYVLNAAATRHSMDDLARHYLHTQTISFEDVAGKGAK 569 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL----IVEKLLHVYERLDKPMIDVVSQ 582 + DK++ + ++A E++++ QL+ L + KL + ++LLH L+ P+ ++ Q Sbjct: 570 QVTFDKVAINIASDYACEDADITYQLFELFQDKLKDDAVNQRLLH---ELEIPVAQILCQ 626 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI I + L ++S + +++LE+ Y +GE FNL SPKQLG++LF KL G Sbjct: 627 MESEGIMIKRSFLNELSERFDEEIVALEKQAYIEAGEAFNLGSPKQLGEMLFDKLGVIGG 686 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTK+GQ+ T L +I ++P+ + LE+R L+K+K+TY D+L + T RVHT Sbjct: 687 KKTKSGQYSTGEAVLSKI---EHPLAEIALEYRSLAKLKNTYTDALDAVADNDTDRVHTS 743 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A T TGRL+S +PNLQNIPI+T G+ IR+AFI+P + L++ADYSQIELR++AH + Sbjct: 744 YHQALTSTGRLSSTDPNLQNIPIRTKTGRLIRQAFIAPKGRVLLAADYSQIELRLMAHFS 803 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 L + F LDIH AAE+ G +++ V+P RR+AK INF ++YG+S F LA Q++ Sbjct: 804 GDDNLTRAFNEGLDIHSATAAEVLGKSVDDVTPTERRNAKAINFGLLYGMSAFGLAKQIQ 863 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + RSEA DYI +YF R+PG+ Y+++T+N NGY+ETI GR+++ +I +R Sbjct: 864 MGRSEAQDYINQYFARYPGVQRYMQETRNSAVDNGYIETILGRKLYTPDIQHSNQMVRRG 923 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ERAAINAP+QGSAAD+ + AMI+V L K KMLLQ+HDELVFEV +++ ++ Sbjct: 924 AERAAINAPLQGSAADLIKLAMIAVDNVLP--KQNAKMLLQVHDELVFEVDADKVDHIAK 981 Query: 943 IIVHSME-------KACLPKINLRVPLKVNIKVSNNWQE 974 +I ++M+ K ++ VPL V V +NW E Sbjct: 982 LIKNAMQNVLSDTAKQMGWDVDFAVPLLVETGVGDNWDE 1020 >gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379] gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379] Length = 893 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 355/986 (36%), Positives = 531/986 (53%), Gaps = 107/986 (10%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M ++ L+LVDGSS+IYRA+YA LS G P N I GF ML KLL KE H Sbjct: 1 MSHDDTLYLVDGSSYIYRAYYAIRHLSSP-TGHPTNTIYGFTQMLLKLL----KEHQPRH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+FD TFR E+YPDYKANR +P+ L Q+ +R +AF IPA+E+ GFEADDI Sbjct: 56 VAVVFDVGRETFRTELYPDYKANRAALPDDLRVQMGPIRDLVRAFNIPALELAGFEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I G V I++ DKDLMQ+V+ L DT+KE++ I VI+++G+ P + Sbjct: 116 IGCLAARFSATGGRVVIVTGDKDLMQIVTERVTLLDTMKEKRSAITDVIERFGVEPRLVT 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + L GD+ DNIPG+PGIG KTA L++EYG+L+ +L AS +K K Sbjct: 176 DILGLAGDASDNIPGVPGIGEKTAMKLIREYGSLDQLLERASEVKGK------------- 222 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 NG +L F L++R T CD Sbjct: 223 ---------------------------NGEKLREFRD----QALLSRRLATIRCDV---- 247 Query: 301 PVVLDINTTENKGIAIETEIDRD---TTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 P+ +++ ++ E DR+ T + F++L + + Sbjct: 248 PIQVELEELASQ------EPDREALNTLFRLYGFTTLIKELT------------------ 283 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + ++++ Y + +++++ V LE + + T ++D ++ + ++ S D Sbjct: 284 -GRSTLSSEGYCTVTAQEELEELVHALERSEEFAIDLETTSLDPRDAEIVGLSFSFRDH- 341 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + +I + HTS L ++ +L L+ E+ KIG NIK+D VL Sbjct: 342 -------QAWYIPVG-HTSDAGLQPGQLPRDLVLERLRPQLESPSPTKIGQNIKFDMQVL 393 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 G+S+ G D ML SYVL+ R H + ++A + L + + E+ S K+ + Sbjct: 394 ATNGVSLSGIRFDTMLASYVLNPSRQGHGLDALALEHLGHRMISYAEVTGSGKTQKNFSQ 453 Query: 533 ISDSQVQEHAIENSNVILQLWLLLR---PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 + +A E+++ WLL R P L + ++ R++ P++ +++ ME G+ Sbjct: 454 VEIETASRYACEDADAT---WLLHRKFSPLLAENGVEELFHRIEMPLVPILAGMENHGVL 510 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 +D LL +S + S + +LE I+ L+G FNL+SPKQLG++LF +L+ +G KTK Sbjct: 511 LDIRLLADLSRDFSSRMATLEGRIFQLAGTTFNLNSPKQLGEVLFERLQLKTGKKTKGKT 570 Query: 650 -WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 W T + L + ++ I + IL++R LSK+KSTY+D+LP ++ RT RVHT Y+ T Sbjct: 571 GWSTDNEVLSSL-AEEHEIARLILDYRGLSKLKSTYSDALPRLVHPRTGRVHTSYNQTVT 629 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIPI++D G+ IR AFI+PP +ISADYSQIELR+LAH++ Sbjct: 630 STGRLSSSDPNLQNIPIRSDEGRMIRHAFIAPPGHVIISADYSQIELRVLAHLSGDPVFC 689 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q FE+ DIH A+E+FG+ E V+ +MRR AKTINF IIYG F LA QL I R A Sbjct: 690 QAFEHDEDIHTRTASEVFGLFPEMVTAEMRRQAKTINFGIIYGQGSFSLARQLGIARKTA 749 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I Y R +++ + G+V TI GRR+ +I S +IR +R AI Sbjct: 750 EEFISAYKERHAKAVGFLDDCIRQAEEQGFVTTILGRRLPIADITSTNGNIRAFAQRNAI 809 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 N PIQGSAADI + AMI V + L +++++Q+HDELVFEV E+E+ ++ M Sbjct: 810 NYPIQGSAADIIKSAMIRVDGRIRSEGLKSRLIMQVHDELVFEVREDELLAMELLVEEEM 869 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 +A + LR+PLKV+I NW E Sbjct: 870 SRA----VELRIPLKVDISHGVNWSE 891 >gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] Length = 932 Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust. Identities = 361/989 (36%), Positives = 547/989 (55%), Gaps = 88/989 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + I+R +YA P ++ K GL +AI GF N L ++++ + + H AV Sbjct: 5 LFLLDAYALIFRGYYAFIKNPRINSK--GLNTSAILGFMNSLLEVIKKEKPD----HLAV 58 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD R E++ DYKANR + PE + +P + +A IP IE +G+EADDII T Sbjct: 59 AFDKGGSVERTELFADYKANREETPEAIRLAIPYIHEILKALHIPIIEKEGYEADDIIGT 118 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178 + AEK+ + V +++ DKD QLVS +Y + E ++ V +K+ + P + Sbjct: 119 LSKQAEKQNYLVYMVTPDKDYAQLVSDNIFIYRPSRGGNDVEIWGVKEVQEKFEVQNPLQ 178 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ + GD++DNIPG+PG+G KTA LL ++G++EN+L + ++K K RENI E Sbjct: 179 VIDFLGMMGDAVDNIPGLPGVGEKTAKKLLADFGSMENLLAHTDQLK-GKLRENIESNKE 237 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 LS++L + DVP+T E + + + + + LEF +L+ TY Sbjct: 238 KGILSKQLATIMLDVPVTFDEEDFAMSEPDFEAVGRIFEELEFRQLLQNFLRTYQPQMTT 297 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL-ERLQK 357 P + TE + +++ T+ D F+ + K NS TP L + L Sbjct: 298 TPPPLTGNKPTEGQ-LSLFTQGDL--------FAQPQVMSEKKNSTNTPHFYQLADTLMA 348 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 N T++ F T +++A ++ + I+ K Sbjct: 349 QQLLLQNLLQQTEVC-------------------FDTETTSVNALEAELVGISFCWSAHK 389 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + T K TK +L + FFENEH K+G N+KYD VL Sbjct: 390 G---------------YYVPFPTDKAATTK-LLETFRPFFENEHIGKVGQNLKYDLKVLQ 433 Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI------LKSRKS--SI 528 Y I +RG D M+ Y+L+ H++ +++ +L+YT I K+++S ++ Sbjct: 434 NYNIEVRGALFDTMIAHYLLNPDM-RHNMDILSETYLNYTPIAIESLIGKGKAQRSMRTV 492 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLR---PKLIVEKLLHVYERLDKPMIDVVSQMEI 585 P+D QV+E+A+E+++V QL + + PK+ EK +Y L+ P+I V++ ME Sbjct: 493 PLD-----QVKEYAVEDADVTWQLKNVFKEEMPKVNAEK---IYTDLEAPLIKVLAAMER 544 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA-K 644 G+ +D LK+ + + ++ LE I + +GE FNL+SPKQLGDILF KLK S K Sbjct: 545 EGVNLDVPFLKEYAKTLDADIAQLEATIAEQAGENFNLASPKQLGDILFEKLKIDSKPKK 604 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TKTGQ+ T+ + L + I+ +ILEWRQ+ K+KSTY D+LP +NK T RVHT Y Sbjct: 605 TKTGQYATSEEVLAPF-ASKHKIVADILEWRQVQKLKSTYVDALPLEVNKLTGRVHTTYM 663 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAK 763 TGRL+S PNLQNIPI+T GQ++R+AFI+ P L+SADYSQIELRI+A +++ Sbjct: 664 QTVAATGRLSSNNPNLQNIPIRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSE 723 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 + F + DIHR AA++F V +E+V+ + R HAKT+NF IIYG+S F L+ Q + Sbjct: 724 EHNMIDSFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGIIYGVSAFGLSAQTNL 783 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 RSE+ + I Y+ +P + YI K F +++GYVET+ GRR + +I+S +R Sbjct: 784 SRSESKELIDTYYATYPNLRNYISKQIQFAQEHGYVETVLGRRRYLPDIHSRNQVVRGAA 843 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER A+NAPIQGSAADI + AMI + L +L T+MLLQ+HDELVF+VP+ E+ T + Sbjct: 844 ERNAVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVFDVPKTELNTVKPL 903 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972 I +ME A L VPL ++ V +NW Sbjct: 904 IKEAMESA----FTLAVPLVADLGVGDNW 928 >gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803] gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803] Length = 942 Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust. Identities = 338/995 (33%), Positives = 555/995 (55%), Gaps = 76/995 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFL+D + I+R +YA P ++ K G +AI GF N L+ +++ + + Sbjct: 1 MADQKRLFLLDAYALIFRGYYAFIKNPRINSK--GFNTSAIMGFTNSLFDVIRREKPD-- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 H AV FD R E++ +YKANR + PE + +P+++ +A IP +E G EA Sbjct: 57 --HLAVCFDKDGSKERTEMFAEYKANRDETPEPIREAIPIIQDILKAMHIPVVECAGMEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175 DDII T AEKE + V +++ DKD QLVS +Y + + + I+ WGIP Sbjct: 115 DDIIGTLAKQAEKENYKVYMVTPDKDFAQLVSENIFMYRPAR-----MGNGIEIWGIPEV 169 Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 PE+++ + GDS+DNIPG+PG+G KTA L++YG++E +L N +K Sbjct: 170 QKKFEVERPEQVIDFLGMMGDSVDNIPGLPGVGEKTAKKFLKKYGSMEALLENTDDLK-G 228 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 K +E ++E AE RLS+KL + D + E L +G ++ + LEF +L ++ Sbjct: 229 KMKEKVIENAELGRLSKKLATIFIDCDVKFHAEDYELSMPDGDKVQEIFEELEFRRLKDQ 288 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347 + + + V + + + A T QFS +I E+T Sbjct: 289 FIKLFSGEEETKQTQVSNSPSAKKNAQA---------TAGAGQFSLFGGDGEEI--ERTS 337 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 + L Q +N + KI +++KL S F T +++ ++ + Sbjct: 338 SRTNLSDTPHFYQ-SLNTEMARKI--------FIEKLLKQKSVCFDTETTSLNTLDAELV 388 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 IA S K ++ + ++++ L+ FFEN+ KIG Sbjct: 389 GIAFSWEAGK--------GFYLPFPEEKKE--------AQKLIEELRNFFENDKIEKIGQ 432 Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----K 522 N+KYD VL +Y I ++G D M+ Y+++ H++ +A+ +L+YT + I K Sbjct: 433 NLKYDIKVLDKYKIDVKGALFDTMIAHYLINPDMR-HNMDVLAETYLNYTPQPISELIGK 491 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K+ + ++ + E+A+E++++ QL L +L + ++ ++ P+++V++ Sbjct: 492 KGKNQGSMRDVALDKQTEYAVEDADITFQLKNLFEKELEEAETRKLFNEIEIPLVEVLAD 551 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME+ GI++D++ LK +S ++ ++ LE IY+ +GE+F +SSPKQLG ILF K++ Sbjct: 552 MELEGIKLDEEYLKSLSEALASDIKDLETKIYEAAGEEFLISSPKQLGIILFEKMELSKK 611 Query: 643 -AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTGQ+ +T++D+ +N I++++L++R L K+++TY D+LPN + + T RVHT Sbjct: 612 PKKTKTGQY-STSEDVLSSLAEENDIVQHVLDYRGLVKLQNTYVDALPNQVERTTGRVHT 670 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILA 759 Y + TGRL+S PNLQNIPI+T+ G+++R+AF+ P + L++ADYSQIELRI+A Sbjct: 671 DYVQTTAATGRLSSNNPNLQNIPIRTERGKQVRKAFV-PRDENYVLLAADYSQIELRIIA 729 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 ++ + Q F++ DIH AA++F V +E+V+ + R +AKT+NF IIYG+S F L+ Sbjct: 730 ALSNEENMIQAFKDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSN 789 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 Q + RSE+ + I Y+ +P + +I F R+NG+V T+ GRR + +INS + + Sbjct: 790 QTSLSRSESKELIDTYYKTYPKLSNFIADQVEFARENGHVSTVLGRRRYLKDINSRNAIV 849 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER A+NAPIQGSAADI + AMI++HK L++ TKMLLQ+HDELVF+ ++E+ Sbjct: 850 RGAAERNAVNAPIQGSAADIIKLAMINIHKKLKEENYKTKMLLQVHDELVFDAHKDELEK 909 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++I ME A L VPL V++ V NW E Sbjct: 910 VQKMIKSEMENA----YKLEVPLDVDLGVGKNWLE 940 >gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] Length = 920 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 343/989 (34%), Positives = 550/989 (55%), Gaps = 95/989 (9%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA TP ++ K GL +AI GFCN L ++L +H V Sbjct: 4 LFLLDAYALIYRSYYAFLRTPRINSK--GLNTSAIMGFCNTLNEVLTKEH----PTHIGV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD+ TFR+E++P YKA R + PE + +P+++ +A IP +++ GFEADD+I T Sbjct: 58 AFDH-GKTFRHEVFPAYKAQREETPEDIRQSVPIIKQILEAMRIPILQVDGFEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL--------YDTVKEEKIDIEHVIKKWGIP 175 +G +++ DKD QL+ P + Y+T+ E++++ K+GIP Sbjct: 117 VATRFGTDGIDTFMLTPDKDYGQLIGPRVFIFRPRHGGGYETLGEKEVE-----SKYGIP 171 Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 P +++ L AL GDS DN PG PG+G KTAA L+ ++G+++N+L + IK K R+ I Sbjct: 172 TPAQVIDLLALMGDSADNFPGCPGVGEKTAAKLINQFGSIDNLLQHTDEIK-GKLRDKIE 230 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 E ++S+ L +RTDVP+ + L+ L +E + +L + LEF L N++ Sbjct: 231 NAVEDIKMSKLLATIRTDVPLQLSLDELKVEQPDEVKLRRIFEELEFKTLANKL------ 284 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 +N +E K +ET++D FS + N ++ P+K E Sbjct: 285 -----------LNKSELKPKNVETQLDL--------FS-----VNTPNGQEEPEKTNYET 320 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 + + Y I N +++ + T S T + DA ++ + ++ S Sbjct: 321 HKTVPH------EYKLIDNEEEMDRLCDFFMTKEFVSIDTETTSTDAIRAELVGLSFSVE 374 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKY 471 + K ++ L + +E L Y++ F +EN+ LKIG NIKY Sbjct: 375 ENK--------AFYVPLPANR-----------EEALKYIRIFKPLYENDKILKIGQNIKY 415 Query: 472 DKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KS 526 D VL+ YG++++G D M+ Y++ H++ +A+ L Y +E++ + K Sbjct: 416 DYKVLNNYGVTLQGEMFDTMIAHYLIQP-ELHHNMDYMAETLLGYRTIHIEELIGPKGKK 474 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 + +S + + E+A E++++ L+L LL P+L L ++ ++ P++ V++ ME+ Sbjct: 475 QKNMRDLSPTDICEYAAEDADITLRLKHLLEPRLKELGLEELFWNIEMPLVRVLADMELN 534 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKT 645 G+ +D + L++ S + + E+ IY +GE FN+ SPKQ+GDILF KL+ KT Sbjct: 535 GVCLDTEALQETSRIFTDRMKQYEQEIYKEAGETFNIGSPKQVGDILFGKLQIMDKPKKT 594 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTGQ+ T+ + L+ + +P+++NIL +R + K+ STY D+LP IN RT +HT ++ Sbjct: 595 KTGQYVTSEEVLQSLEA-KHPVVRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQ 653 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A T TGRL+S +PNLQNIP++TD G++IR+ FI SADYSQIELRI+AH++ Sbjct: 654 AQTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDE 713 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 + + F DIHR AA+I+ +I+KV+ R+ AK NF IIYGI+ + LA ++ IP Sbjct: 714 NMMEAFREGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMGIPN 773 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA + I+ YFH FP + Y+E+ K R GY ET+F RR + +INS +++R ER Sbjct: 774 GEARELIQDYFHTFPKVKAYMEQAKETARAKGYAETLFHRRRYLPDINSRNATVRGFAER 833 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAPIQG+ ADI + AM+ + K ++ + +KM+LQ+HDEL F V EE +I++ Sbjct: 834 NAINAPIQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEEREQVERIVI 893 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ AC L VPL + +NW E Sbjct: 894 EEMQNAC----QLNVPLTADAGWGSNWLE 918 >gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6] gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6] Length = 931 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 349/989 (35%), Positives = 537/989 (54%), Gaps = 86/989 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y +YKANRP +P+ + Q+ + + A G P + ++G EADD+I T Sbjct: 61 AKGGTFRDDMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D++ V +K+G+ PE+++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDVDGVKEKFGVAPEQIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTA-ALLLQEYGNLENI-----LINASRIKQKKRRENILE-YAET 239 GDS DNIPG+PGIG KTA LL+ G L+ + ++ I+ K LE + E Sbjct: 181 GDSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEEHKEM 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS +L ++ DVP+ + L+ L L + + +L+ LEF + YD Sbjct: 241 AFLSYQLATIKIDVPLDVGLDDLHLIEPDREKLLELYTLLEFK-------SWYD------ 287 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 EI RDT K + + ++ ++ ++ + Sbjct: 288 -------------------EIQRDT--KRVELKTANEVAPVVDVS----------VEAVI 316 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 P+ YT I++ W++KL +F T +DA ++ + ++ + Q + Sbjct: 317 SVPVEA-IYTTILDQATFDLWLKKLNDAKLFAFDTETTGIDAHQAQLVGVSFAV--QPHE 373 Query: 420 TSF-KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 ++ + +I + +D+ +L LK E+ LKIG + K+D +L Sbjct: 374 AAYIPLTHAYIGVPDQLDRDT---------VLRALKPLLEDPTKLKIGQHAKFDMNILAN 424 Query: 479 Y--------GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526 GI+++G D ML SYVL++ + HD+ S+A+K+L Y + ++I Sbjct: 425 CAIDGDPAQGITVQGIAFDTMLESYVLNATATRHDMDSLAKKYLDYDTVSFQDIAGKGAK 484 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEI 585 + D+I+ Q +A E+++V L+L L +L + L V ++ P++ V++++E Sbjct: 485 QLTFDQIALEQAGPYAAEDADVTLRLHQELHAQLAAIPSLASVLTDIEMPLVPVLARIER 544 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 G +D LL S E+ ++ LE ++++GE FNL SPKQLG IL+ KL P KT Sbjct: 545 QGALVDAQLLGVQSIELGNKMVELERQAFEIAGEAFNLGSPKQLGAILYEKLGMPVLKKT 604 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 GQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Y Sbjct: 605 GKGQASTAEDVLAKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQ 664 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A TGRL+S +PNLQNIP++T G++IR+AF++P KL++ADYSQIELRI+AH++K Sbjct: 665 AVAATGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSKDE 724 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F ++LD+H AAE+F V + +V+ RR AK INF +IYG+ +L + + Sbjct: 725 GLMNAFRHNLDVHTATAAEVFKVELGEVTSDQRRSAKAINFGLIYGMGAQKLGKDIGVDT 784 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 A YI YF R+PG+ EY+E+T+ GYVET FGRR++ +I+S K R ER Sbjct: 785 KTAKAYIDVYFARYPGVREYMERTRAQASDQGYVETFFGRRLYLPDIHSNKPQERAAAER 844 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAP+QG+AADI ++AM+ V L L K++LQ+HDELV EV E+ + S+ + Sbjct: 845 TAINAPMQGTAADIIKKAMVRVDNWLTASGLDAKVILQVHDELVLEVREDLVAEVSEKVR 904 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A L VPL V + V +NW E Sbjct: 905 EHMSAAA----QLDVPLLVEVGVGDNWDE 929 >gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] Length = 902 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 354/984 (35%), Positives = 550/984 (55%), Gaps = 115/984 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS+++RA+YA P L+ + G P A+ G NML KL+ + + + AV+FD Sbjct: 16 LILIDGSSYLFRAYYALPPLTNRK-GQPTGAMYGVINMLRKLMVEYQPD----YVAVVFD 70 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 TFR+++Y YKANR ++P L Q+ PL + +A G P I +G+EADD+IAT Sbjct: 71 PKGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEI-IRALGFPLIIKEGYEADDVIATLA 129 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A+++G V + + DKDL Q+V+ L +T+ + ++ + V++K+G+PPEK++ L Sbjct: 130 KKAKEKGMPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGVLEKFGVPPEKIIDYLTL 189 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 TGD+ DNIPG+P +G KTA L +Y ++EN++ +A IK K + Sbjct: 190 TGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHAHEIKGK--------------VGEN 235 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 L D+P L+ R+ T V+ D Sbjct: 236 LRACIDDLP-----------------------------LMRRLVT-----------VISD 255 Query: 306 INTTENKGIAIETEIDRDTTIK---TSQFSS-----LSDQTSKINSEQTPQKLFLERLQK 357 + EN I+TE +R+ I+ +F S L++Q K+ + Q Sbjct: 256 LPLEENPTDLIQTEKNREKLIELFTEYEFKSWLAELLANQDKKVAAFQ------------ 303 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I + K ++W++KL +F T +A +K + ++ + Sbjct: 304 ----------YATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPH- 352 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTL--TKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 E ++ L D TG +E+L LK E+ + I N+KYD V Sbjct: 353 -------EAAYVPLW----HDYTGAPAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEV 401 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 L + G+++R D +L SYVL+S + HD+ ++A K+L +++ I + Sbjct: 402 LAKEGLTIRAKTYDTLLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFN 461 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590 ++ + +A E+++V LQL L P + EK L V+E+++ P++ ++ QME+ G+ + Sbjct: 462 HVTLDKATAYAAEDADVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLV 521 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D +L+ S E+ + LE+ Y L+G +FNLSSPKQL IL+ +LK P KT GQ Sbjct: 522 DTAMLQAQSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ- 580 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 +TA+++ Q D P+ K ILE R L+K+K+TY D LP ++ ++R+HT Y+ T T Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S PNLQNIPI+T+ G+KIRRAFI+PP ++++ADYSQ+ELRI+AH++K L + Sbjct: 641 GRLSSNNPNLQNIPIRTEEGRKIRRAFIAPPGFQMVAADYSQVELRIIAHVSKDPSLIKA 700 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+ DIHR AAE+FGVN+E+V+P+ RR AK INF ++YG+S F L QL I R A + Sbjct: 701 FDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAQE 760 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI YF R+P +HEY++K + GYVET+FGRR++ +I++ R ERAAINA Sbjct: 761 YIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINA 820 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AADI + AMI V L+ + + +++Q+HDELVFEV E+++ I +ME+ Sbjct: 821 PMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKVIPQIKKAMEE 880 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A + L VPL V++ V NW E Sbjct: 881 A----VALSVPLVVDVGVGGNWDE 900 >gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908] gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908] Length = 945 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 351/986 (35%), Positives = 529/986 (53%), Gaps = 89/986 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA+YA P L+ G A+ G NML LL + S AV Sbjct: 32 ENPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYKP----SQMAV 86 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFRN++Y +YKA RP +P+ L Q+ + +A G+P + I G EADD+I T Sbjct: 87 VFDAKGKTFRNDMYEEYKAQRPPMPDDLRTQIEPLHNIIRALGLPLVCIPGVEADDVIGT 146 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A KEG AV I + DKD+ QLV L +T+ + E V +K+G+ PE ++ L Sbjct: 147 IATQASKEGRAVLISTGDKDMAQLVDDNVTLINTMTNTIMGPEEVTEKFGVGPELIIDLL 206 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237 AL GD DNIPG+PG+G KTA +L G++E IL +I K + E+ Sbjct: 207 ALQGDKADNIPGLPGVGEKTAVAMLTGAGSVEQILAAPEKIPALGFRGSKTMPAKLAEHG 266 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E +LS +L ++ DV + + L++ N L+ + +EF + + V Sbjct: 267 EMLKLSYELATIKLDVEMEQDWKELVIAPANKDDLVKYYGEMEFKRWLAEV--------- 317 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +NKG S+ S S E PQ + E Sbjct: 318 -----------LDNKG-----------------SSAQSSDNSADEEEVVPQAIDAE---- 345 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I+ + + +W+++L + T ++D +K + I Sbjct: 346 ----------YETILTHEALDKWIEQLTKADLIAIDTETTSLDYMTAKLVGI-------- 387 Query: 418 DDTSFKVE---TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 SF VE ++ L+ H D+ + E ++ LK E+ K+G N+KYD Sbjct: 388 ---SFAVEVGKAAYLPLA-HDYLDAPEQLDF-DEAIAKLKPLLEDPKLKKVGQNLKYDIS 442 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 + GI ++G D ML SYV +S S H++ +A K+L + + +EI + Sbjct: 443 IFANVGIKLQGVAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGAKQLTF 502 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQ 589 ++I +A E++++ L+L L +L E KL V+ ++ P++ V+S++E G+ Sbjct: 503 NQIDLETAAPYAAEDADITLRLHQHLWARLEKEPKLASVFTDIELPLVQVLSKIERQGVL 562 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID +L Q S EI+ ++ LE++ ++++GE FNLSSPKQL + F KL +P KT G Sbjct: 563 IDSMMLGQQSQEIAISIDKLEQDAFEIAGETFNLSSPKQLQALFFEKLGYPVIKKTPKGA 622 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + L ++ D P+ K IL+ R L+K+KSTY D LP +N ++ RVHT Y A+ Sbjct: 623 PSTAEEVLVELAL-DYPLPKIILQHRSLAKLKSTYTDKLPLMVNAQSGRVHTSYHQANAA 681 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S EPNLQNIPI+T+ G++IR AFI+ KK+++ADYSQIELRI+AH+++ L Sbjct: 682 TGRLSSSEPNLQNIPIRTEEGRRIRHAFIAQEGKKVLAADYSQIELRIMAHLSQDKGLLT 741 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIH+ AAE+FGV+ +V+ + RR AK +NF +IYG+S F LA QL IPR EA Sbjct: 742 AFAEGKDIHKATAAEVFGVDFSEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRGEAQ 801 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 YI YF R+PG+ +Y+E T+ GYV T++GRR++ I + R ERAAIN Sbjct: 802 KYIDTYFDRYPGVLKYMEDTRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAIN 861 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSM 948 AP+QG+AADI ++AMI++ +E M++Q+HDELVFEV ++ + I M Sbjct: 862 APMQGTAADIIKKAMINIASWIESETHGEITMIMQVHDELVFEVDSDKAEALKEQICKMM 921 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 A ++L V L + +NW++ Sbjct: 922 ADA----VSLDVELLAEGGIGDNWEQ 943 >gi|332678896|gb|AEE88025.1| DNA polymerase I [Francisella cf. novicida Fx1] Length = 897 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 355/976 (36%), Positives = 540/976 (55%), Gaps = 92/976 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RA++A P L+ G P AI G NML KL E + AV+FD Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+++YP YKA+R I + L Q+ + + G I G EADD+I T Sbjct: 59 AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +K+G+ + I + DKD+ QLV+ LYD++K D+ V++K+ I P +++ AL Sbjct: 119 NLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQIIDYLALM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPGIP +G KTA LQ+Y N++ I+ N +IK K EN+ + +LS +L Sbjct: 179 GDASDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 ++ D+ + + +E L + + LI EF L+ D D ++I+ Sbjct: 238 ATIKCDLELDLTVEDLKCKAADKAYLIEAYTRYEFKSLLK------DLDNSDIK------ 285 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 I TSQ Q + + E Sbjct: 286 -------------------IATSQA-----QAADVAIE---------------------- 299 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I + + +LE S +F TD+++ + + + ++ K+ +F + Sbjct: 300 -YITITTQTQLDDLIAELEKSDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 L V Q G +L LK F + +K+ HN K+D+ VL +Y I + G Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540 +D M+M+YVL S HD+ S++++ L +YT I + K +D++ V + Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTA--IAGTGKQQQTLDQVDIEIVAK 465 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++++ +L+ + L +K+L +Y L+ P+ +++QME TG++ID L Q S Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 A + ++ LE Y+L+G++FNLSSP QL +ILF KL P KT GQ T+ + L Q Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + D I I+++R LSK+K+TY D LP ++ RVHT Y+ T+TGRL+S +PN Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPIK+ G+KIR AFI+ +++ADYSQIELRI+AH++K L + F +LDIH Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQNLDIHS 703 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI YF+R+ Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 P + EY+ K F +QNGYVETI GRR++ EINS RN ERAAINAP+QG+AADI Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823 Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 ++AMI+V+ + +++ KM++Q+HDELVFEV + ++ I ME A + L Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879 Query: 959 RVPLKVNIKVSNNWQE 974 VPL+VN+ +W + Sbjct: 880 NVPLEVNVDSGKSWDQ 895 >gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703] gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703] Length = 938 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 360/997 (36%), Positives = 539/997 (54%), Gaps = 84/997 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDGSS++YRA++A DG P A+ G NML +L R + + + Sbjct: 1 MSNKPTLLLVDGSSYLYRAYHAMGQNLSAPDGAPTGAMYGVLNMLRRL----RADYVHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR+E++PDYKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T +A + G+ V + + DKD+ QLV+ L +T+ E +DIE V +K+G+ P Sbjct: 113 ADDVIGTLAKMASEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L ++ +A +K K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAGEVK-GKVGENLQAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E LS LV ++TDV + H L D L++L T Sbjct: 232 LEQLPLSYDLVTIKTDVDL-----HTELSDG--------LESLRRT-------------T 265 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS--LSDQTS---KINSEQTPQKLF 351 +V+D + E E T F S + +Q + +I E+ P+ Sbjct: 266 PKWAQLVVDFKRWGFRTWLKEAESRMHEAQNTDLFGSEHIGEQAALAMEIQPEKQPE--- 322 Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411 L+ P D Y + + KL T ++DA ++ + I+I Sbjct: 323 ------LAPVPEKLD-YQAVTTEAQFAALLDKLAQADKIGIDTETTSLDAMNAALVGISI 375 Query: 412 STLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 + F+ E ++I V S + + +++L LK EN KIG N+K Sbjct: 376 A---------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLK 424 Query: 471 YDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKS 526 YD+ V Y I++ G D ML SY+++S H + ++++WL T + + Sbjct: 425 YDQHVFANYDIALNGIAGDSMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAK 483 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 I ++ Q E+A ++++ L+L LR ++ +K L +YE+++ P+ V+ +ME Sbjct: 484 QISFADVAIVQATEYAAQDADFALRLEAHLRAQMD-DKQLEMYEKMELPVAQVLFEMERN 542 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--K 644 G+QID+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ K Sbjct: 543 GVQIDRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKK 602 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 T G T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ Sbjct: 603 TAKGGISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA 661 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 A +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ Sbjct: 662 QAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGD 721 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L F+N D+HR AAE+FG E VS + RR+AKTINF +IYG+ + LA L I Sbjct: 722 KTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLSID 781 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 A ++I RYF R+PG+ EY+++TK G+VET+FGRR++ +I++ ++ R E Sbjct: 782 NISAKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAE 841 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEI 937 RAAINAP+QG+A+D+ +RAMI V L D L +K+++Q+HDELV EVPE E+ Sbjct: 842 RAAINAPMQGTASDLIKRAMIDVSCWLSECEASPWDDLLQSKLIMQVHDELVLEVPEAEL 901 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M K +N VPL + V NW+E Sbjct: 902 DLVKEKLPQIMAKVDEGMLN--VPLVAEVGVGMNWEE 936 >gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust. Identities = 350/973 (35%), Positives = 540/973 (55%), Gaps = 60/973 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS +++RAF+A P L+ G NAI G + L KL++ + +H AVIFD Sbjct: 4 FILVDGSYYLFRAFHALPPLTTSQ-GQTTNAIKGALSALQKLMRRMQP----THMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+ + P+YKA+RP +P L Q+P + + GIP + + G EADD+I T Sbjct: 59 TPEPTFRHMLSPEYKAHRPAMPSELSTQIPYLHAIIKGLGIPLLLLPGAEADDLIGTLAC 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A +EG V I + DKD+ QLV+ L D+ +++ +D + VI K+G+ P++++ L Sbjct: 119 RAVREGHHVLISTGDKDMAQLVNDHIKLEDSFRDQVLDHDGVIAKFGVRPDQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G TAA LL +Y + IL NA IK K E+I E A+ L+ +L Sbjct: 179 GDASDGIAGVPGVGKVTAAKLLNQYQTIGGILENAHLIK-GKVGESIRENADKIPLNHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + D+P+ + L L + P L LEF L+ + + D EP Sbjct: 238 ASIVCDLPLELDWHELKLGRPDVPALKKLYAELEFRALLQSLEHPNNPDNQPQEP----- 292 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 K + E + +D K + S+++Q + PI+ Sbjct: 293 ----QKSYSFE-DTKKDDIPKLLETLSITEQPVAL--------------------PISEA 327 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y +++ + V++L+ + F + T+T + + +S Q E Sbjct: 328 KYHTVLDKTEFLALVERLKA--APRFAVDTETTSLDYRLARIVGVSFALQAG------EA 379 Query: 427 IFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 +I + D G + + +L LK EN KIG ++KYD V + +GIS+ Sbjct: 380 FYIPIG----HDYMGAPEQLDAQFVLDILKPILENPAIGKIGQHMKYDAHVFNNHGISLA 435 Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQE 540 G+ D ML SYVL+ + H + +AQ +L+YT ++I + ++I + Sbjct: 436 GWAFDTMLASYVLNPTATRHGMDDLAQYYLNYTTTTFEQIAGKGAKQLTFNQIELEKAAP 495 Query: 541 HAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++++ +L+ +L + +L + + P V+ +ME GI++D L ++ Sbjct: 496 YAAEDADITWRLYEHFSKELAKIPRLERLLLDAEMPAAQVLYEMENNGIRLDIPFLAELG 555 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 +L+LE + +L+G+ FN+SSPKQLG+ILF KL G KT +GQ+ T LE+ Sbjct: 556 QRFGAQILTLESHAIELAGQPFNVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEK 615 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 I D+PII ILE+R LSK+KSTY DSL + TQRVHT Y A TGRL+S +PN Sbjct: 616 I---DHPIIATILEYRSLSKLKSTYTDSLIAQSDPATQRVHTSYHQAIAATGRLSSTDPN 672 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPI+ ++G++IR+AFI+P + +++ADYSQIELR++AH ++ L + F + DIH+ Sbjct: 673 LQNIPIRGEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRDGRDIHQ 732 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAE+ G+ +E V+ RR AK INF ++YG+S F LA QL + R+EA +YI YF R+ Sbjct: 733 ATAAEVMGIALEDVTSDQRRQAKAINFGLLYGMSAFGLAKQLNLSRAEAQEYITLYFSRY 792 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 P +H+Y+E T+ + GYVET+ GRR++ + I + + +R ERAAINAP+QGSAADI Sbjct: 793 PSVHDYMENTRALAAEQGYVETVLGRRLYMENIRAGNAMVRQAAERAAINAPLQGSAADI 852 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + AMISV +SL K KMLLQ+HDELVFEV E++ + ++ M + ++ Sbjct: 853 IKLAMISVDQSLP--KEHAKMLLQVHDELVFEVDEDKADEVTALLKKLMPAVLQGRADIA 910 Query: 960 VPLKVNIKVSNNW 972 VPL++ + NW Sbjct: 911 VPLEIEVGRGVNW 923 >gi|68171574|ref|ZP_00544948.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa] gi|88658019|ref|YP_506910.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas] gi|67999000|gb|EAM85677.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa] gi|88599476|gb|ABD44945.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas] Length = 944 Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust. Identities = 354/991 (35%), Positives = 546/991 (55%), Gaps = 84/991 (8%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D ++RA+YA P L R GLP+ + GF N+ K ++ + + + V+FD Sbjct: 6 IIDAYGLLFRAYYALPNL-RTSYGLPIGGVYGFINIFLKYIE----KHVTDYLVVVFDTG 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY-I 127 + FR+ IYP+YK NRPK+P+ L+PQ L+R A AF I + E+ G+EADD+IAT + Sbjct: 61 SKNFRHNIYPEYKGNRPKLPDDLIPQFSLLREAVNAFNIASEEVVGYEADDVIATLSKKY 120 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 + +G VT++++DKDL+QL+ C++D +K + I+ E V K+GI +++ +LTG Sbjct: 121 CKLQGVKVTVVTSDKDLLQLLKYNICIFDPIKNKYIEEEDVQSKFGISSNQLLDFLSLTG 180 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247 D+ DN+PGIPGIG KTAA LL ++G+L+N+L++ +K K RE+I +Y++ A LSR+LV Sbjct: 181 DASDNVPGIPGIGVKTAAKLLNDFGSLDNLLLHVHEVKTNKCRESITQYSDQAILSRQLV 240 Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC----DAANIEPVV 303 L +V I +E + L+ FLK E L+N+V + A N Sbjct: 241 TLCDEVDICGDIEKYSFQISGIQELVEFLKKYELQSLMNKVDKFFKVGNASSAVNQNTSS 300 Query: 304 LDINTTENKGIAIE-----TEIDR-----DTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 D +K I E E+D+ + + +Q +S SD+T + ++ Sbjct: 301 SDKTMGGDKVIHHEPQSSMNEVDKFFKVGNASSAVNQNASSSDKT--MGGDKVIHHELQS 358 Query: 354 RLQKLSQY-PINNDSYTKIVNTKDIQQWVQKLETI--GSASFKIITDTMD-----AFHSK 405 + K+ ++ + N S T N + + E I + S K+ + AF+ + Sbjct: 359 SMNKVDKFFEVGNTSSTVNQNASSSDKTMGGSEVIHYSTESLKVFLENCKGEGIMAFYME 418 Query: 406 PIAIAIST--LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463 I + L KDD ++ID K+ +T + L +K + L Sbjct: 419 MADNVIDSVSLSYKDDI-----LLYID-----------KDHVT-DALELIKPVLGLNYVL 461 Query: 464 KIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523 K+ +++K L+ + + F+DIM+MSY+L H + Q+ ++Y K+ + + Sbjct: 462 KVIYDVK--TLLKVIPDVEIVAFDDIMIMSYILSPSVHDHSL----QEIINYNVKQDVVN 515 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 K++I + + + L V +L +YER++KP+I V+ M Sbjct: 516 VKTAITLLLLHKLLKK-------------------NLFVNQLYTIYERVEKPLIRVLDSM 556 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E G+ ID D+LK +S+ S+ + LE IY L+G +FN++S KQLG +LF K+ Sbjct: 557 EKVGMLIDIDILKTLSSTFSEKVSVLENEIYRLAGTEFNIASSKQLGTVLFDKMGIKKSK 616 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 K +G + T A+ L + + I IL+WR +K+KSTY D+L IN + R+HTFY Sbjct: 617 KLSSGSYSTDAEVLNDLVFNEIEIADKILQWRHFTKLKSTYTDALGKQINSNSGRIHTFY 676 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 S+ ST TGRL+S PNLQNIPI+++ G IRRAF++ KL+SADYSQIELRI+AHIA Sbjct: 677 SMISTATGRLSSSNPNLQNIPIRSEEGNAIRRAFVARKGYKLVSADYSQIELRIMAHIAG 736 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 + F DIH + A +IF + + +RR AK+INF IIYG+S F LA QL I Sbjct: 737 VQAFKDAFFLDQDIHSITAEQIFCT--QSLDKNLRRKAKSINFGIIYGMSAFGLAKQLGI 794 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 RSEA YI YF +P I Y+ K + + GY TIFGR+ +INS ++ RN + Sbjct: 795 SRSEANAYIDNYFKSYPEIQSYMNNIKIYAKTYGYTRTIFGRKCFIRDINSSNAAARNFS 854 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ERAAINAP+QG++ADI + +MI L D ++LQ+HDEL+FE+ EE + A ++ Sbjct: 855 ERAAINAPLQGTSADIIKMSMI----HLFDKITHGSLILQVHDELLFEILEEYVDYAVEV 910 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I ME + L VPLKV+I++ NW + Sbjct: 911 ITKVMEGI----VKLSVPLKVDIRIGTNWAD 937 >gi|237797957|ref|ZP_04586418.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020808|gb|EGI00865.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6] Length = 921 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 347/992 (34%), Positives = 535/992 (53%), Gaps = 102/992 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L R++ S AV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPESPLAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAAL--------LLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA + + Y NLE + R K + E+ E Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEKVATLPIR-GAKTLAAKLEEHRE 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ D +PL+ +E +L C Sbjct: 240 MAFLSYELATIKID----VPLD------------------IELDQL--------HC---- 265 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355 E DRDT ++ +F S + + ++ + Q+L +E Sbjct: 266 -------------------GEPDRDTLMELYAELEFKSWIEDLQR-DAMRAGQELVVEE- 304 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +Y I+ W++KL+ +F ++ DA ++ + ++ + + Sbjct: 305 ---PTVAAKEAAYEVILEQDRFDAWLKKLQAAPLFAFVTQSNGNDAQRAQLVGLSFA-IQ 360 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + ++ + +D+ +L LK E+ K+G + K+ + Sbjct: 361 THEAAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKTKVGQHAKFAINL 411 Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 L +GI ++G D +L SYVLDS + HD S+ K+L++T ++I Sbjct: 412 LANCAIGGDQAHGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPVNFQDIAGK 471 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582 + D+I+ Q +A E +++ L+L + +L + L V ++ P++ V+++ Sbjct: 472 GAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFETRLAAIPTLQPVLSDIEMPLVPVLAR 531 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +E G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALECEAFAIAGEEFNLGSPKQLGVILYEKLGMPIL 591 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 +KT TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT RVHT Sbjct: 592 SKTATGQPSTAEAVLSELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRVHTS 651 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L F N LD+HR AAE+FGV +E V+ MRR AK INF +IYG+S F LA Q+ Sbjct: 712 RDEGLLHAFRNDLDVHRATAAEVFGVELEGVTNDMRRSAKAINFGLIYGMSAFGLAKQIG 771 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R ++ Y+ RYF R+PG+ +Y+E+T+ + G+VETIFGRR++ +IN+ S+R Sbjct: 772 VDRKQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPSLRKG 831 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAP+QG+AADI ++AM++V+ LE+ L +++LQ+HDELV EV E+ + S+ Sbjct: 832 AERMAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDLVEQISE 891 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I M A L VPL V + V NNW E Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919 >gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153] Length = 930 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 358/986 (36%), Positives = 533/986 (54%), Gaps = 70/986 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L+ ++ +AS IK K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIK-GKVGENLRAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R A + Sbjct: 232 LPRLPLSYDLVTIKTDVDL-----HTELSDG--------------IESLRRTAPKW---- 268 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E ERL Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAEMPS-----ERL 320 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 321 PEKAVAPEKLD-YQAVTTEAQFSALLDKLSQADTIGIDTETTSLDAMNAALVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK EN KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIEQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG E VS + RR+AKTINF +IYG+ + LA L I A Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAAI Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI V L D + +K+++Q+HDELV EV E E+ + + M Sbjct: 846 NAPMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 K + L VPL + V NW+E Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928 >gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000] gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000] Length = 925 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 343/992 (34%), Positives = 537/992 (54%), Gaps = 102/992 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L R++ S AV+FD Sbjct: 10 LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVFD 64 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 65 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 124 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 125 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 184 Query: 187 GDSIDNIPGIPGIGYKTAAL--------LLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA + + Y NLE + R K + E+ Sbjct: 185 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIR-GAKTLAAKLEEHRA 243 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ D +PL+ +E +L C Sbjct: 244 MAFLSYELATIKID----VPLD------------------IELEQL--------HC---- 269 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355 +E DRD ++ +F S + + ++++ Q+L +E Sbjct: 270 -------------------SEPDRDKLMELYAELEFKSWIEDLQR-DAKRAGQELVVEE- 308 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +Y I+ W++KL+ +F ++ DA ++ + ++ + + Sbjct: 309 ---PTVAAKEAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 364 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + ++ + +D+ +L LK E+ + +K+G + K+ + Sbjct: 365 PHEAAYIPLTHSYMGVPQQLDRDT---------VLKTLKPLLEDPNKIKVGQHAKFAINL 415 Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 L GI ++G D +L SYVLDS + HD S+ K+L++T ++I Sbjct: 416 LANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGK 475 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582 + D+I+ Q +A E +++ L+L + +L + L V ++ P++ V+++ Sbjct: 476 GAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEMPLVPVLAR 535 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +E G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P Sbjct: 536 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPIL 595 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 +KT TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Sbjct: 596 SKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 655 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A Sbjct: 656 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 715 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 K L F N LD+HR A+E+FGV +E V+ MRR AK INF +IYG+S F LA Q+ Sbjct: 716 KDEGLLHAFRNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 775 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R ++ Y+ RYF R+PG+ +Y+E+T+ + G+VETIFGRR++ +IN+ S+RN Sbjct: 776 VDRKQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNG 835 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 +R AINAP+QG+AADI ++AM++V+ L++ L +++LQ+HDELV EV E+ + S+ Sbjct: 836 AQRMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISE 895 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I M A L VPL V + V NNW E Sbjct: 896 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 923 >gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14] gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14] Length = 937 Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust. Identities = 358/992 (36%), Positives = 535/992 (53%), Gaps = 75/992 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L+ ++ +AS IK K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLRAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D I L+ C Sbjct: 232 LPRLPLSYDLVTIKTDVDL-----HAELSDG-----IESLR----------------CTT 265 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E + E+ Sbjct: 266 PKWAQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 321 AEKATAPERLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK N KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQISF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ R RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG E VSP+ RR+AKTINF +IYG+ + LA L I A Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK G+VET+FGRR++ +I + ++ R ERAAI Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHK------LATKMLLQIHDELVFEVPEEEITTASQ 942 NAP+QG+A+D+ +RAMI V + L + + L +K+++Q+HDELV EVPE E+ + Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLSECEASLWDCLKSKLIMQVHDELVLEVPEAELDFVKE 905 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + M K + L VPL + V NW+E Sbjct: 906 KLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 935 >gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 870 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 339/920 (36%), Positives = 516/920 (56%), Gaps = 68/920 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+ L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P T + I+ S S+ + ++ E Sbjct: 301 GAKPAAKPQET-----VVID--------------ESPSEPAAALSYE------------- 328 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +Y I++ ++ W++KL+ +F TD++D + + ++ + ++ Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+ + L LK E+E K+G N+KYD+ VL Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S++ +WL + T ++I K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K KT G T Sbjct: 550 AVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGR Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGR 668 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 669 LSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFA 728 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL IPR EA Y+ Sbjct: 729 EGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYM 788 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R ERAAINAP+ Sbjct: 789 DLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPM 848 Query: 893 QGSAADITRRAMISVHKSLE 912 QG+AADI +RAMI+V L+ Sbjct: 849 QGTAADIIKRAMIAVDAWLQ 868 >gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013] Length = 983 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 359/994 (36%), Positives = 538/994 (54%), Gaps = 78/994 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 46 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 101 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 102 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 157 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 158 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 217 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L+ ++ +AS IK K EN+ Sbjct: 218 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLRAA 276 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILE-DCNGPRLISFLKALEFTKLINRVATTYDCD 295 LS LV ++TDV + L I C P+ + ++F + R T+ + Sbjct: 277 LPRLPLSYDLVTIKTDVDLHAELSDGIESLRCTTPKWAQLV--VDFKRWGFR---TWLKE 331 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL-ER 354 A + D + + I + +D +T+ SE+ P+K E+ Sbjct: 332 AESRMHEAADGDLFGSDTIGEQAALDMETS-----------------SERLPEKAVAPEK 374 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 L Y + + KL T ++DA ++ + I+I+ Sbjct: 375 L-----------DYQAVTTEAQFATLLDKLSQAEKIGIDTETTSLDAMNAALVGISIA-- 421 Query: 415 DQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 F+ E ++I V S + + +++L +LK + EN KIG N+KYD+ Sbjct: 422 -------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGHLKPYLENPALKKIGQNLKYDQ 472 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 473 HVFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIG 531 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 ++ Q E+A ++++ L+L LR ++ EK L +YE+++ P+ V+ +ME G+Q Sbjct: 532 FADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQ 590 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKT 647 ID+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT Sbjct: 591 IDRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAK 650 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 651 GGISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAV 709 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 +TGRLAS PNLQNIPI+T+ G+K+RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 710 AITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTL 769 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F+N D+HR AAE+FG E VS + RR+AKTINF +IYG+ + LA L I Sbjct: 770 IAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLS 829 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A ++I RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAA Sbjct: 830 AKNFIDRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAA 889 Query: 888 INAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTA 940 INAP+QG+A+D+ +RAMI V + L D L +K+++Q+HDELV EV E E+ Sbjct: 890 INAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFV 949 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M K + L VPL + V NW+E Sbjct: 950 KEKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 981 >gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170] gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170] Length = 944 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 340/994 (34%), Positives = 550/994 (55%), Gaps = 72/994 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M ++ LFL+D + I+R +YA P ++ K G+ +AI GF N L+ +++ + + Sbjct: 1 MAEQKRLFLLDAFALIFRGYYALIKNPRINSK--GMDTSAIMGFTNSLFDVIKREKPD-- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 H AV FD R E++P+YKANR + P+ + +P ++ +A IP + +G+EA Sbjct: 57 --HLAVCFDKGGSVERTEMFPEYKANRLETPDAIKIAVPFIQEILKAMHIPVVVQEGWEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175 DDII T AEKE + V +++ DKD QLVS +Y + + + I+ WGIP Sbjct: 115 DDIIGTLAKQAEKEDYKVYMVTPDKDFGQLVSENIFMYRPAR-----MGNGIEIWGIPEI 169 Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 PE+++ + GD+ DNIPG+PG+G KTA + EYG++E +L N ++K Sbjct: 170 QKRFGVERPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFINEYGSMEGLLANTDKLK-G 228 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 K +E + E E LS+KL + T V + + + + ++ LEF +L ++ Sbjct: 229 KMKEKVEENGELGILSKKLATICTTVDVQFDAKDYEMSVPDNEKVQEIFNELEFRRLKDQ 288 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347 + D EN + ET +K + Q S S+ Sbjct: 289 FVKIFSED------------KNENNAQSNET-----PAVKKVVAEAGGGQFSLFGSDGNA 331 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 F E + + I + Y + + ++ ++Q L S F T ++ ++ + Sbjct: 332 PATFKESSGRKTIQDIPH-VYQSVASGMAMKLFMQNLMKQNSVCFDTETTGLNPLTAELV 390 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 IA S K +I +Q +EI+ L+ FFE+E KIG Sbjct: 391 GIAFSWEAGK--------GFYIPFPEDKNQ--------AQEIIETLRPFFESEMIEKIGQ 434 Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----K 522 N+KYD VLH+Y I ++G F D ML Y+++ H++ +++ +L+YT I K Sbjct: 435 NLKYDIKVLHKYNIQVKGKFFDSMLAHYLINPDMR-HNMDVLSETYLNYTPVSITELIGK 493 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K+ + + + + E+A+E++++ QL RP+L ++ ++ P++ V++ Sbjct: 494 KGKNQLSMRDVPLEKQTEYAVEDADITYQLAQHFRPELAEASTEELFNTIEIPLLHVLAD 553 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641 ME+ GI +D++ L +S +++ ++ L+ IY + ++FN++SPKQLG+ILF KLK Sbjct: 554 MELEGINLDKEFLGSLSEDLNNDIKELQSKIYKEADQEFNIASPKQLGEILFDKLKLVDK 613 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTGQ+ +TA+D+ D+ II+N+LE+R LSK+KSTY D+LP + +RT RVHT Sbjct: 614 PKKTKTGQY-STAEDVLSYLAKDHEIIRNVLEYRGLSKLKSTYVDALPLQVEERTGRVHT 672 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAH 760 Y TGRL+S PNLQNIPI+T+ G+++R+AF+ L++ADYSQIELRI+A Sbjct: 673 DYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDEDYTLLAADYSQIELRIIAA 732 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ + + F+N DIH A+++F V +++V+ + R +AKT+NF IIYG+S F L+ Q Sbjct: 733 LSEEDTMIEAFKNGEDIHASTASKVFDVPLDEVTREQRSNAKTVNFGIIYGVSAFGLSNQ 792 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 + R+EA + I+ Y+ +P + Y+ + +F R NGYV+T+ GRR + +IN + +R Sbjct: 793 TDLSRTEAKELIETYYKTYPKLRNYMSEQIDFARDNGYVQTVLGRRRYLKDINGSNAIVR 852 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQGSAADI + AMI++HK L + TKMLLQ+HDELVF+V + E+ Sbjct: 853 GAAERNAVNAPIQGSAADIIKIAMINIHKKLSEGNYKTKMLLQVHDELVFDVHKAELEEL 912 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I ME A L VPL V + + +NW E Sbjct: 913 KSLIQSEMENAY----KLAVPLDVELGLGDNWLE 942 >gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] Length = 975 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 356/986 (36%), Positives = 535/986 (54%), Gaps = 70/986 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 46 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 101 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 102 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 157 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 158 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 217 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L+ ++ +AS IK K EN+ Sbjct: 218 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLQAA 276 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R A + Sbjct: 277 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTAPKW---- 313 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E + E+ Sbjct: 314 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 365 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 366 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 421 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L +LK + EN KIG N+KYD+ Sbjct: 422 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGHLKPYLENPALKKIGQNLKYDQH 473 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 474 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 532 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ EK L +YE+++ P+ V+ +ME G+QI Sbjct: 533 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 591 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y + + FNL+SPKQL +ILF K+ P+ KT G Sbjct: 592 DRAELARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 651 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 652 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 710 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 711 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 770 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG E VS + RR+AKTINF +IYG+ + LA L I A Sbjct: 771 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 830 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAAI Sbjct: 831 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNTNARAGAERAAI 890 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI V L D + +K+++Q+HDELV EV E E+ + + M Sbjct: 891 NAPMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 949 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 K + L VPL + V NW+E Sbjct: 950 AK--VGGGLLDVPLVAEVGVGENWEE 973 >gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523] Length = 897 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 358/981 (36%), Positives = 540/981 (55%), Gaps = 102/981 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RA++A P L+ G P AI G NML KL E + AV+FD Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPTMYDTE----YVAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+++YP+YKA+R + + L Q+ + + G P I G EADD+I T Sbjct: 59 AKGKNFRHQLYPEYKAHRKDMDDELRVQIEPLHQIIKKMGFPVIIEDGVEADDVIGTLAQ 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +K+G+ + I + DKD+ QLV+ LYD++K D+ V+KK+ I P++++ AL Sbjct: 119 NLQKQGYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLKKYQISPQQIIDYLALM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPGIP +G KTA LQ+Y N++ I+ N +IK K EN+ + +LS +L Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 ++ D+ + L +ED C AA+ Sbjct: 238 ATIKCDLEL-----DLTVEDLK-------------------------CRAAD-------- 259 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSL-----SDQTSKINSEQTPQKLFLERLQKLSQY 361 K IE +F SL +D T ++S+ + +E Sbjct: 260 -----KAYLIEA-------YTRYEFKSLLKDFDNDNTKMLSSQVQAASIAIE-------- 299 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 Y I + + +LE S +F TD+++ + + + ++ K+ + Sbjct: 300 ------YIAITTQSQLDDLIAELEKSDSFAFDTETDSLNTYEANLVGLSFCA---KEGRA 350 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 F + L V Q G +L LK F + K+ HN K+D+ VL +Y I Sbjct: 351 FYIPLQHRYLGV-PQQLELGF------VLDKLKPLFADVKKAKVAHNFKFDEKVLSKYAI 403 Query: 482 SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISD 535 + G +D M+M+YVL S HD+ S++++ L +YT I + K +D+I Sbjct: 404 EINGKVDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTA--IAGTGKHQQTLDQIDI 460 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDL 594 V ++A E++++ +L+ + L ++ L+ +Y ++ P+ +++QME TG++ID Sbjct: 461 EIVAKYAAEDADITFRLFNHFKALLEQDETLYKLYCEIEMPLTIILNQMEKTGVKIDATK 520 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L Q SA + ++ LE Y+L+G++FNLSSP QL +ILF KL P KT GQ T+ Sbjct: 521 LIQQSASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSE 580 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 + L Q+ D I I+++R LSK+K+TY D LP ++ + RVHT Y+ T+TGRL+ Sbjct: 581 EVLVQL-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDVNS-RVHTSYNQTGTVTGRLS 638 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIPIK+ G+KIR AFI+ +++ADYSQIELRI+AH++K L + F S Sbjct: 639 SSDPNLQNIPIKSPEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQS 698 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 LDIH AAE+ G+ I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI Sbjct: 699 LDIHSATAAEVLGIGIDEVSSEQRRKAKAINFGLIYGMSAFGLAKQLEIPRAEAQEYIDI 758 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF+R+P + EY+ K F +QNGYVETI GRR++ EINS RN ERAAINAP+QG Sbjct: 759 YFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQG 818 Query: 895 SAADITRRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 +AADI ++AMI V+ L+++ KM++Q+HDELVFEV + ++ I ME A Sbjct: 819 TAADIIKKAMIDVNTMILQEYNSEVKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA-- 876 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 + L VPL+VN+ +W + Sbjct: 877 --VKLSVPLEVNVDAGESWDQ 895 >gi|330965636|gb|EGH65896.1| DNA polymerase I [Pseudomonas syringae pv. actinidiae str. M302091] Length = 921 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 343/992 (34%), Positives = 538/992 (54%), Gaps = 102/992 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L R++ S AV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPESPLAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAAL--------LLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA + + Y NLE + R K + E+ Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIR-GAKTLAAKLEEHRA 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ D +PL+ +E +L C Sbjct: 240 MAFLSYELATIKID----VPLD------------------IELDQL--------HC---- 265 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355 +E DRD ++ +F S + + ++++ Q+L +E Sbjct: 266 -------------------SEPDRDKLMELYAELEFKSWIEDLQR-DAKRAGQELVVEE- 304 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +Y I+ + W++KL+ +F ++ DA ++ + ++ + + Sbjct: 305 ---PTVAAKEAAYEVILEQEQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 360 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + ++ + +D+ +L LK E+ + +K+G + K+ + Sbjct: 361 THEAAYIPLTHSYMGVPQQLDRDT---------VLKTLKPLLEDPNKIKVGQHAKFAINL 411 Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 L GI ++G D +L SYVLDS + HD S+ K+L++T ++I Sbjct: 412 LANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGK 471 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582 + D+I+ Q +A E +++ L+L + +L + L V ++ P++ V+++ Sbjct: 472 GAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPSLQPVLNDIEMPLVPVLAR 531 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +E G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPIL 591 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 +KT TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Sbjct: 592 SKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 651 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 K L F N LD+HR A+E+FGV +E V+ MRR AK INF +IYG+S F LA Q+ Sbjct: 712 KDEGLLHAFRNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 771 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R ++ Y+ RYF R+PG+ +Y+E+T+ + G+VETIFGRR++ +IN+ S+RN Sbjct: 772 VDRKQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNG 831 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 +R AINAP+QG+AADI ++AM++V+ L++ L +++LQ+HDELV EV E+ + S+ Sbjct: 832 AQRMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISE 891 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I M A L VPL V + V NNW E Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919 >gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568] Length = 937 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 356/993 (35%), Positives = 539/993 (54%), Gaps = 77/993 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A L+ DG P A+ G NML +L R + + + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMAQLTAP-DGAPTGAMYGVLNMLRRL----RADYVHDY 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR+E++ DYKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 56 CAVVFDAKGKNFRHEMFSDYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 111 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 112 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 171 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L+ ++ +A+ IK K EN+ Sbjct: 172 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHAAEIK-GKVGENLQAA 230 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R + Sbjct: 231 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 267 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E + E+ Sbjct: 268 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 319 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 320 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 375 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK EN KIG N+KYD+ Sbjct: 376 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 427 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 428 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 486 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G+QI Sbjct: 487 ADVAIEQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 545 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 546 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 605 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 606 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 664 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 665 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 724 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG+ E VSP+ RR+AKTINF +IYG+ + LA L I A Sbjct: 725 AAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISA 784 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK G+VET+FGRR++ +I++ ++ R ERAAI Sbjct: 785 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAERAAI 844 Query: 889 NAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTAS 941 NAP+QG+A+D+ +RAMI V + L D L +K+++Q+HDELV EV E E+ Sbjct: 845 NAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVK 904 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M K ++ VPL + V NW+E Sbjct: 905 EKLPQIMAKVGGGLLD--VPLVAEVGVGENWEE 935 >gi|330874574|gb|EGH08723.1| DNA polymerase I [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 921 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 343/992 (34%), Positives = 538/992 (54%), Gaps = 102/992 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L R++ S AV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAAL--------LLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA + + Y NLE + R K + E+ Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIR-GAKTLAAKLEEHRA 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ D +PL+ +E +L C Sbjct: 240 MAFLSYELATIKID----VPLD------------------IELDQL--------HC---- 265 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355 +E DRD ++ +F S + + ++++ Q+L +E Sbjct: 266 -------------------SEPDRDKLMELYAELEFKSWIEDLQR-DAKRAGQELVVEE- 304 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +Y I+ + W++KL+ +F ++ DA ++ + ++ + + Sbjct: 305 ---PTVAAKEAAYEVILEQEQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 360 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + ++ + +D+ +L LK E+ + +K+G + K+ + Sbjct: 361 THEAAYIPLTHSYMGVPQQLDRDT---------VLKTLKPLLEDPNKIKVGQHAKFAINL 411 Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 L GI ++G D +L SYVLDS + HD S+ K+L++T ++I Sbjct: 412 LANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGK 471 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582 + D+I+ Q +A E +++ L+L + +L + L V ++ P++ V+++ Sbjct: 472 GAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPSLQPVLNDIEMPLVPVLAR 531 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +E G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPIL 591 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 +KT TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Sbjct: 592 SKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 651 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 K L F N LD+HR A+E+FGV +E V+ MRR AK INF +IYG+S F LA Q+ Sbjct: 712 KDEGLLHAFRNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 771 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R ++ Y+ RYF R+PG+ +Y+E+T+ + G+VETIFGRR++ +IN+ S+RN Sbjct: 772 VDRKQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNG 831 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 +R AINAP+QG+AADI ++AM++V+ L++ L +++LQ+HDELV EV E+ + S+ Sbjct: 832 AQRMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISE 891 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I M A L VPL V + V NNW E Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919 >gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] Length = 918 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 355/990 (35%), Positives = 538/990 (54%), Gaps = 98/990 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA+YA P L+ G A+ G NML LL + + AV Sbjct: 6 DNPLILVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYKP----TQMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFRNE+Y +YKA RP +P+ L Q+ PL R+ +A G+P + I G EADD+I Sbjct: 61 VFDAKGKTFRNEMYSEYKAQRPPMPDDLRNQIEPLHRI-IKALGLPLVCISGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A KEG AV I + DKD+ QLV L +T+ + V +K+G+ PE+++ L Sbjct: 120 TIATQASKEGRAVLISTGDKDMAQLVDDNITLINTMTNTIMGPAEVTEKFGVGPERIIDL 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GD DNIPG+PG+G KTA +L G++ NIL ++ + K I+E+ Sbjct: 180 LALQGDKADNIPGLPGVGEKTALAMLTGVGSVANILAAPEKMPELGFRGSKTMPAKIIEH 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A+ +LS +L ++ DV + L +E N LI +EF + + V Sbjct: 240 ADMLKLSYELATIKLDVELEQDWHQLSIEPANKDELIKCYGEMEFKRWLAEV-------- 291 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 ++ +K A E+E D KL +E Sbjct: 292 ---------LDNKGDKATAAESEDDAPAA-----------------------KLDIEV-- 317 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 Y I+ + + +W++KL++ + T +++ +K + I Sbjct: 318 ----------EYDIILTLEQLDRWIEKLKSAELIAIDTETTSLNYMEAKLVGI------- 360 Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNTLTKEIL-SYLKKFFENEHFLKIGHNIKYD 472 SF VE ++ L+ H D+ L K ++ L+ E+E+ K+G N+KYD Sbjct: 361 ----SFAVEAGKAAYLPLA-HDYIDAP--EQLDKAVVFEKLQPLLEDENLKKVGQNLKYD 413 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSI 528 + GI + G + D ML SYV +S S H++ +A K+L + + +EI + Sbjct: 414 ISIFANAGICLLGVQFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGVKQL 473 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITG 587 ++IS +A E++++ L+L L +L + +L V+ ++ P+++ +S +E G Sbjct: 474 TFNQISLETAAPYAAEDADITLRLHQHLWSRLEKLPELASVFTDIEMPLVNTLSTIERQG 533 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 + ID LL Q S E+++ + LE ++++G+ FNLSSPKQL ++ F KL +P KT Sbjct: 534 VLIDSMLLGQQSEELARKIDELEHKAHEIAGQAFNLSSPKQLQELFFEKLGYPVIKKTPK 593 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G T + L ++ D P+ K ILE R L+K+KSTY D LP +N +T RVHT Y A+ Sbjct: 594 GAPSTAEEVLVELAL-DYPLPKIILEHRSLAKLKSTYTDKLPLMVNAQTGRVHTSYHQAN 652 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 TGRL+S EPNLQNIPI+T+ G++IR AFI+P KK+++ADYSQIELRI+AH+++ L Sbjct: 653 AATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLSQDKGL 712 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F DIH+ AAE+F V+ +V+ RR AK +NF +IYG+S F LA QL IPRSE Sbjct: 713 LTAFAEGKDIHKATAAEVFDVDFSEVTTDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRSE 772 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A YI YF R+PG+ +Y+E+T+ GYV T+FGRR++ I + R ERAA Sbjct: 773 AQSYIDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAMRRQAAERAA 832 Query: 888 INAPIQGSAADITRRAMISVHKSLE---DHKLATKMLLQIHDELVFEVPEEEITTASQII 944 INAP+QG+AADI ++AMI++ +E D ++ M++Q+HDELVFEV E + + + Sbjct: 833 INAPMQGTAADIIKKAMINIANWIETETDGEII--MIMQVHDELVFEVDEAKADSLQAKV 890 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A L V L + +NW++ Sbjct: 891 CELMAAAA----KLDVELLAEAGIGDNWEQ 916 >gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289] gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289] Length = 920 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 340/989 (34%), Positives = 550/989 (55%), Gaps = 95/989 (9%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA TP ++ K GL +AI GFCN L ++L +H V Sbjct: 4 LFLLDAYALIYRSYYAFLRTPRINSK--GLNTSAIMGFCNTLNEVLTKEH----PTHIGV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD+ TFR+E++P YKA R + PE + +P+++ +A IP +++ GFEADD+I T Sbjct: 58 AFDH-GKTFRHEVFPAYKAQREETPEDIRQSVPIIKQILEAMRIPILQVDGFEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL--------YDTVKEEKIDIEHVIKKWGIP 175 +G +++ DKD QL+ P + Y+T+ E++++ K+GIP Sbjct: 117 VATRFGTDGIDTFMLTPDKDYGQLIGPRVFIFRPRHGGGYETLGEKEVE-----SKYGIP 171 Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 P +++ L AL GDS DN PG PG+G KTAA L+ ++G+++N+L + IK K R+ I Sbjct: 172 TPAQVIDLLALMGDSADNFPGCPGVGEKTAAKLINQFGSIDNLLRHTDEIK-GKLRDKIE 230 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 E ++S+ L +RTDVP+ + L+ L +E + +L + LEF L N++ Sbjct: 231 NAVEDIKMSKLLATIRTDVPLQLSLDELKVEQPDEVKLRRIFEELEFKTLANKL------ 284 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 +N +E K +ET++D ++ T + ++T+ + P + Sbjct: 285 -----------LNKSELKPKNVETQLDL-FSVNTPRGQEELEKTNYETHKTVPHE----- 327 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 Y I N +++ + T S T + DA ++ + ++ S Sbjct: 328 -------------YKLIDNEEEMDRLCDFFMTKEFVSIDTETTSTDAIRAELVGLSFSVE 374 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKY 471 + K ++ L + +E L Y++ F +EN++ LKIG NIKY Sbjct: 375 ENK--------AFYVPLPANR-----------EEALKYVRIFKPLYENDNILKIGQNIKY 415 Query: 472 DKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KS 526 D VL+ YG++++G D M+ Y++ H++ +A+ L Y +E++ + K Sbjct: 416 DYEVLNNYGVTLQGKMFDTMIAHYLIQP-ELHHNMDYMAETLLGYRTIHIEELIGPKGKK 474 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 + +S + + E+A E++++ L+L LL P+L L ++ ++ P++ V++ ME+ Sbjct: 475 QKNMRDLSPTDICEYAAEDADITLRLKHLLEPRLKELGLEELFWNIEMPLVRVLADMELN 534 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKT 645 G+ +D + L++ S + + E+ IY +GE FN+ SPKQ+GDILF KL+ KT Sbjct: 535 GVCLDTEALQETSRIFTDRMKQYEQEIYKEAGETFNIGSPKQVGDILFGKLQIMDKPKKT 594 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTGQ+ T+ + L+ + +P+++NIL +R + K+ STY D+LP IN RT +HT ++ Sbjct: 595 KTGQYVTSEEVLQSLEA-KHPVVRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQ 653 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A T TGRL+S +PNLQNIP++TD G++IR+ FI SADYSQIELRI+AH++ Sbjct: 654 AQTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDE 713 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 + + F DIHR AA+I+ +I+KV+ R+ AK NF IIYGI+ + LA ++ IP Sbjct: 714 NMMEAFREGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMGIPN 773 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA + I+ YFH FP + Y+E+ K R GY ET+F RR + +INS +++R ER Sbjct: 774 GEARELIQDYFHTFPKVKAYMEQAKETARAKGYAETLFHRRRYLPDINSRNATVRGFAER 833 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAPIQG+ ADI + AM+ + K ++ + +KM+LQ+HDEL F V EE +I++ Sbjct: 834 NAINAPIQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEEREQVERIVI 893 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ AC L VPL + +NW E Sbjct: 894 EEMQNAC----QLNVPLTADAGWGSNWLE 918 >gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Alteromonadales bacterium TW-7] gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Alteromonadales bacterium TW-7] Length = 911 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 355/978 (36%), Positives = 547/978 (55%), Gaps = 81/978 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS+++RA+++ P L+ G AI G NML L+ ++ SH V Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSK-GEATGAIYGVINMLKSLI----RQYDPSHMVV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFRN++Y +YKANRP +P+ L Q+ + +A G P I I+G EADD+I T Sbjct: 61 VFDAKGKTFRNDMYSEYKANRPPMPDDLRTQIAPIHSIIKAMGFPLISIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + IA ++ V + + DKD+ QLV+ L +T+ + D + V++K+G+ P+ ++ Sbjct: 121 FARIASEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDTISDPDTVVEKFGVGPDLIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--KRRENILEYAETAR 241 AL GD +DNIPG+ G G KTA LQ+YG+L+ ++ NA IK K ++ N L++ Sbjct: 181 ALMGDKVDNIPGVEGCGPKTAVKWLQKYGSLQGVMDNAGEIKGKIGEKLANALDHLP--- 237 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LS +L ++ DV + L+ L++ N LI+ EF + + + DA Sbjct: 238 LSYELATIKCDVEVESDLDTFKLQEPNKDELIALYGECEFRRWLAELLEN-PSDAQ---- 292 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 L + + E + +E E +T + +QF +L +E+L + Sbjct: 293 THLAVPSQETELPKVE-EAHYETILTEAQFDTL-----------------IEQLNGADLF 334 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 + ++ + + ++ +A + D DA P +++ + Q Sbjct: 335 AFDTETTSLDYMQAQLVGMSFSVKAGEAAYLPVAHDYPDA----PEQLSLEFVMQ----- 385 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-- 479 K+ I D ++ G+N L Y K N + G IK+D + L Y Sbjct: 386 -KLGPILAD----ANKAKVGQN------LKYDKSVLANAGYELNG--IKFDTM-LESYVF 431 Query: 480 -GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538 + R D + + Y+ S DIA +K L++ + E+ K+ Sbjct: 432 NSVGTRHDMDSLALKYLGHKNISFEDIAGKGKKQLTFNQIELDKAAP------------- 478 Query: 539 QEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ L+L +L PK+ EKL V+E ++ P++ V+S +E TG+ ID +L Sbjct: 479 --YAAEDADITLRLHEVLWPKIEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSSMLGA 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S + + L+ LE+ ++++GE FNLSSPKQL +LF KL+ P KT G +TA+++ Sbjct: 537 HSQRLGERLIELEKEAFEIAGEPFNLSSPKQLQVLLFEKLELPIIKKTPKGA-PSTAEEV 595 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 Q D P+ K I+E R LSK+KSTY D LP +N++TQRVHT Y A T TGRL+S + Sbjct: 596 LQELAHDYPLPKVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAVTATGRLSSTD 655 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+++ G++IR AFI+ K+++ADYSQIELRI+AH+++ L F N LD+ Sbjct: 656 PNLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLNAFANGLDV 715 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H AAE+FGV+++ V+ MRR AK +NF +IYG+S F LA QL +PR EA YI +YF Sbjct: 716 HSATAAEVFGVDLDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDKYFE 775 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 RFPG+ EY+E T+ +NGYVETIFGRR+H EIN+ + R ERAAINAP+QG+AA Sbjct: 776 RFPGVLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQGTAA 835 Query: 898 DITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 DI ++AM+SV++ + + T K+L+Q+HDELVFE+ + ++ I M +A Sbjct: 836 DIIKKAMLSVNQWVYEQAPNTVKLLMQVHDELVFEIKTDCAEAYTKQICELMSQAA---- 891 Query: 957 NLRVPLKVNIKVSNNWQE 974 +L VPL V NW++ Sbjct: 892 SLDVPLIVEADEGENWEQ 909 >gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] Length = 949 Score = 562 bits (1449), Expect = e-158, Method: Compositional matrix adjust. Identities = 347/992 (34%), Positives = 555/992 (55%), Gaps = 75/992 (7%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + +FL+D + IYR++YA P ++ K G+ +AI GF N+L +L++N + E IA Sbjct: 9 DKVFLLDAYAIIYRSYYAFLKNPRINSK--GVNTSAIFGFVNILDELIRNEKPEYIA--- 63 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 ++FD TFR+E Y +YKA R K PE + +P ++ +A+GI E++G+EADD+I Sbjct: 64 -IVFDPGGKTFRHETYEEYKAQRQKTPEDIKNAIPYIKRIIEAYGIGIFEMEGYEADDVI 122 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC----LYDTVKEEKIDIEHVIKKWGI-PP 176 T + EGF V +++ DKD QLV Y + + + +E + K+G+ P Sbjct: 123 GTMAKRLQGEGFGVYMMTPDKDYAQLVDTNIFQYKPRYGSAGFDVLGVEEIKAKYGLDSP 182 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +M+ L L GD+ DNIPG PG+G KTA L++++G+++N+L N ++ + +++ Sbjct: 183 AQMIDLLGLMGDASDNIPGCPGVGEKTATKLIKDFGSIDNLLHNTDKLT-GALKTKVVQN 241 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E LSR L ++TD+PI + +E + + + ++ LEF L++R Sbjct: 242 REQIVLSRFLATIKTDIPIDLSIEEIKRKPSDTGKMRELFTELEFRTLLHRHQLG----- 296 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTT-IKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 + +V T+ +G +T+ T+ I+ + S D T I + +T Sbjct: 297 ---DIIVKQETTSHTQGSLFDTQAKEQTSAIQKATNESPQDTTDIIPTLKT--------- 344 Query: 356 QKLSQYPINN--DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 IN+ Y I +I + ++ L + + F T ++D F ++ + ++ + Sbjct: 345 -------INDTRHEYILIQTDDEIDRLIEILGSHSAFCFDTETTSLDTFEAQIVGLSFAV 397 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 QK ++ L D K T+EIL E+ K G N+KYD Sbjct: 398 EPQK--------AYYVALP-----DDKQK---TEEILRRFAPLLEDASIEKTGQNMKYDI 441 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL---KSRKS 526 VL YGI + G D M+ Y+L H++ +A+ +L Y E+ K++KS Sbjct: 442 SVLGNYGIGVGGRMFDTMIAHYLLQP-ELRHNMDYMAEVFLGYRTIHFGELFDDDKTKKS 500 Query: 527 SIPID---KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 PI+ K+ +++++A E++++ LQL + KL L +++ ++ P++ ++++M Sbjct: 501 GKPIEDIRKVELGKLKDYACEDADITLQLKNIFGQKLCESSLKNLFFDIEMPLVPILAKM 560 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSG 642 E G+ ID L + + + L +E +I N+SSPKQ+G++LF +L+ Sbjct: 561 ESNGVLIDDFALASYAETLKRELQKIERDILAYVDLPINISSPKQIGELLFERLRIVEKP 620 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTGQ++T + L+++ +PIIK ILE R L K+ STY ++LP IN +T ++HT Sbjct: 621 TKTKTGQYRTDEETLQKLR-NRHPIIKLILEHRGLKKLLSTYVEALPKLINPKTNKIHTS 679 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 ++ TGRL+S PNLQNIP++ D G++IR+AFI+ P L+SADYSQ+ELRI+AH++ Sbjct: 680 FNQTVVSTGRLSSSNPNLQNIPVRDDYGREIRKAFIAEPGCVLLSADYSQVELRIMAHLS 739 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + F + DIH AA IF V IE+V+ MRR AKT NF IIYGIS F L+ +L Sbjct: 740 GDRNMLSAFASGQDIHAATAARIFKVPIEEVTSDMRRKAKTANFGIIYGISAFGLSERLD 799 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IPR EAA I YF FP + Y+E+ R+NG V+T+FGR+++ +INS + +R Sbjct: 800 IPRKEAAALIDGYFESFPDVKRYMEQAIEEARRNGSVQTLFGRKLYLPDINSQNAGVRGF 859 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAPIQG+AADI + AMI V +++ H ++M+LQ+HDELVF VP EE+ Q Sbjct: 860 AERIAINAPIQGTAADIIKIAMIKVDEAIRHHNYRSQMMLQVHDELVFNVPTEEVDEFRQ 919 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + H+ME A +LRVPL V+I + +NW E Sbjct: 920 SVKHAMETAA----SLRVPLIVDIGIGHNWLE 947 >gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102] gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102] Length = 930 Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust. Identities = 353/989 (35%), Positives = 540/989 (54%), Gaps = 76/989 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDGSS++YRA++A +G P A+ G NML +L R + + + Sbjct: 1 MSNKPTLLLVDGSSYLYRAYHAMGQNLSAPNGAPTGAMYGVLNMLRRL----RADYVHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR+E++PDYKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHEMFPDYKATRPPMPDDLRPQAEALPDLVRL----MGWPVLVIPQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T +A + G+ V + + DKD+ QLV+ L +T+ E +DIE V +K+G+ P Sbjct: 113 ADDVIGTLAKMAGEAGWNVVVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L ++ +A +K K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHAGEVK-GKVGENLQAA 231 Query: 237 AETARLSRKLVMLRTDV----PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 LS LV ++TDV ++ LE L +L+ K F + + A + Sbjct: 232 LPQLPLSYDLVTIKTDVDLHTELSDGLESLRRTTPKWAQLVVDFKRWGFRTWL-KEAESR 290 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 +A N + + + E +A+ET+ ++ + + P+KL Sbjct: 291 MHEAQNTD-LFGSEHIGEQAALAMETQPEKQPELAPA-----------------PEKL-- 330 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 Y I + K+ + T ++DA ++ + I+I+ Sbjct: 331 --------------DYQAITTEAQFAALLDKMSQADTIGIDTETTSLDAMNAALVGISIA 376 Query: 413 TLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471 F+ E ++I V S + + +++L LK EN KIG N+KY Sbjct: 377 ---------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKY 425 Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSS 527 D+ V Y I++ G D ML SY+++S H + ++++WL T + + Sbjct: 426 DQHVFANYDIALNGIAGDSMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQ 484 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 I ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G Sbjct: 485 ISFADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNG 543 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KT 645 +QID+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +IL K+ P+ KT Sbjct: 544 VQIDRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILVDKMGIPTKGLKKT 603 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 G T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ Sbjct: 604 AKGGISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQ 662 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ Sbjct: 663 AVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSIIVSADYSQIELRIMAHLSGDK 722 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F+N D+HR AAE+FG+ E VS + RR+AKTINF +IYG+ + LA L I Sbjct: 723 TLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDN 782 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 A ++I RYF R+PGI EY+++TK G+VET+FGRR++ +I + ++ R ER Sbjct: 783 ISAKNFIDRYFARYPGIAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAER 842 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AAINAP+QG+A+D+ +RAMI V + L + L +K+++Q+HDELV EVPE E+ + + Sbjct: 843 AAINAPMQGTASDLIKRAMIDVSRWL-SYDLKSKLIMQVHDELVLEVPEAELDLVKEKLP 901 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M K +N VPL + V NW+E Sbjct: 902 QIMAKVDEGMLN--VPLVAEVGVGMNWEE 928 >gi|330952067|gb|EGH52327.1| DNA polymerase I [Pseudomonas syringae Cit 7] Length = 921 Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust. Identities = 347/992 (34%), Positives = 534/992 (53%), Gaps = 102/992 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L R++ S AV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPESPLAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA LL Y NL+ + R K + E+ E Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVASLPIR-GAKTLAAKLEEHRE 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ D +PL+ +E +L C Sbjct: 240 MAFLSYELATIKID----VPLD------------------IELDQL--------HC---- 265 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355 E DRDT ++ +F S + + ++++ Q+L +E Sbjct: 266 -------------------GEPDRDTLMELYAELEFKSWIEDLQR-DAKRAGQELTVEE- 304 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +Y I+ W++KL+ +F ++ DA ++ + ++ + + Sbjct: 305 ---PTVEAREAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 360 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + ++ + +D+ +L LK E+ +K+G + K+ + Sbjct: 361 THEAAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPEKIKVGQHAKFAINL 411 Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 L GI ++G D +L SYVLDS HD S+ K+L++T +EI Sbjct: 412 LANCAIDGDQAQGIDLQGVRFDTILESYVLDSTAPRHDRDSLVAKYLTHTPINFQEIAGK 471 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582 + D+I+ Q +A E +++ L+L + +L + L V ++ P++ V+++ Sbjct: 472 GAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVLAR 531 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +E G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPVL 591 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 +KT TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Sbjct: 592 SKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 651 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L F N LD+HR AAE+FGV +E V+ MRR AK INF +IYG+S F LA Q+ Sbjct: 712 QDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 771 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R ++ Y+ RYF R+PG+ Y+E+T+ + G+VETIFGRR++ +IN+ S+R Sbjct: 772 VDRKQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKG 831 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAP+QG+AADI ++AM++V+ L++ L +++LQ+HDELV EV E+ + S+ Sbjct: 832 AERMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISE 891 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I M A L VPL V + V NNW E Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919 >gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18] gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18] Length = 892 Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust. Identities = 335/977 (34%), Positives = 539/977 (55%), Gaps = 103/977 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+DGSS+IYRA++A LS +G P NA+ GF ML K++ K+ +H AV+FD Sbjct: 8 LYLLDGSSYIYRAYFAIRHLSSP-NGFPTNALYGFTQMLLKVM----KDRAPAHVAVVFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +TFRNE++P YKA R +PE L Q+ ++ +AF IPA+E+ G+EADDII T Sbjct: 63 AGKITFRNELFPAYKATRSAMPEDLAQQIEPIKQMVRAFSIPALELPGWEADDIIGTIAR 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE G +++ DKDLMQ+VS L DT+K++ I V +K+G+ P ++V + AL Sbjct: 123 KAEAAGMDCVVVTGDKDLMQIVSEHVTLLDTMKDKSFGIPDVHEKFGVGPGRVVDVLALW 182 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPG+PGIG TA L+QE+G L+ +L A +K K E ++E+A+ ARL Sbjct: 183 GDTSDNIPGVPGIGEVTAKKLMQEFGTLDELLARACEVKGKTG-ERLIEFADQARLC--- 238 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 R T DCDA IE + D Sbjct: 239 ----------------------------------------RTLATIDCDAP-IEYNIDDF 257 Query: 307 NTT--ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP-I 363 T +N+ +A + F++L L+ L+ P + Sbjct: 258 AVTPPDNRRLA--------ALFREYGFATL--------------------LKDLTSSPTL 289 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 + D Y ++ ++++ V+KL+ + + + T +++ + + A+S L Sbjct: 290 SCDHYALVLTEAELRELVEKLKKAPAFAIDLETTSLNPLDASIVGYAVSCLAH------- 342 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 E +I + H + + + + + KIG N+KYD VL + G+ + Sbjct: 343 -EAYYIPIG-HRYLGAPEQLPEALVLELLGPLLTDPDR-KKIGQNLKYDYQVLQQSGVEL 399 Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQ 539 G + D ML +Y+++ R+S + ++A ++L + + E+ + K + ++ + Sbjct: 400 AGIWCDTMLAAYLVNPSRNSQGLDALALEYLDHRMISYAEVAGTGKCELNFSEVDLDRAG 459 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 ++ E+++ L +L PK+ + + + ++ P++ +++ ME+ G+++D +L+K++S Sbjct: 460 PYSCEDADATYLLHEILLPKVREQGMEGLLFDVEMPLMKILADMELCGVKLDVELMKELS 519 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK--TGQWKTTAQDL 657 + L+ LE I++ G FN++SPKQLG++LF ++ G KTK TG W T ++L Sbjct: 520 TGFGRQLIELEAKIHEHCGGSFNINSPKQLGEMLFERMGLAVGKKTKGKTG-WSTNVEEL 578 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E++ ++ + + +L++R +SK+KSTY D+LP ++ +T RVHT Y+ A T TGRL+S + Sbjct: 579 ERL-AEEHEVARLLLQYRSISKLKSTYTDALPRLVDPKTGRVHTSYNQAITNTGRLSSSD 637 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIP++ + G+ IRRAFI+ P ++SADYSQIELR+LAH++ L + F DI Sbjct: 638 PNLQNIPVRGEEGRGIRRAFIAEPGSLILSADYSQIELRVLAHLSGDRVLCEAFAAGEDI 697 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG+ E V+ +MRR AK INF +IYG F LA +L + +A +I+ YF Sbjct: 698 HRRTAAEVFGMFPELVTAEMRRQAKVINFGVIYGQGAFSLAKELGVAPKQAKAFIENYFE 757 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R G ++++ G+V TI GRR+ EI S + R +R A N PIQGSAA Sbjct: 758 RHSGARSFLDRCIAEAETCGFVTTILGRRLQIPEIASKNGNARAFAQRNATNYPIQGSAA 817 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AMI V + + + K+A+++++Q+HDELVFEVP E ++ ME A LP Sbjct: 818 DIIKAAMIRVTRRMLEEKVASRLIMQVHDELVFEVPRNERELMEDLVRAEMEGA-LP--- 873 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPLKV++ NW E Sbjct: 874 LSVPLKVDLNFGLNWAE 890 >gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090] gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2] gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090] gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] Length = 930 Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust. Identities = 357/986 (36%), Positives = 535/986 (54%), Gaps = 70/986 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L+ ++ +A IK K EN+ Sbjct: 173 DQIRDYLALIGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHAPEIK-GKVGENLQAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R A + Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HTELSDG--------------IESLRRTAPKW---- 268 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 + +D + E E + +T F S S + + +N+E +K R Sbjct: 269 ---AQLAVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAEIPSEK----RA 321 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +K + P D Y + + KL + T ++DA +++ + I+I+ Sbjct: 322 EKATA-PEKLD-YQAVTTEAQFAALLDKLAKADTIGIDTETTSLDAMNAELVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK EN KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ D ML SY+++S H + ++ +WL T + + I Sbjct: 429 VFANYGIALNNIAGDAMLASYIIES-HLGHGLDELSGRWLGLETITYESLCGKGAKQISF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ +K L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIGQATEYAAQDADFALRLEARLRAQMD-DKQLEMYEKMELPVAQVLFEMECNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ R RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +PP ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F++ D+HR AAE+FG E VSP+ RR+AKTINF +IYG+ + LA L I A Sbjct: 726 AAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAAI Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI+V L D + +K+++Q+HDELV EV E E+ + + M Sbjct: 846 NAPMQGTASDLIKRAMINVRNWLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 K + L VPL + V NW+E Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928 >gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] Length = 942 Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust. Identities = 340/994 (34%), Positives = 550/994 (55%), Gaps = 74/994 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M ++ LFL+D + I+R +YA P ++ K G+ +AI GF N L+ +++ + + Sbjct: 1 MSEKKRLFLLDAYALIFRGYYALIKNPRINSK--GMDTSAIMGFMNSLFDVIRREQPD-- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 H AV FD R E++P+YKANR + P+ + +P ++ +A IP IE G EA Sbjct: 57 --HLAVCFDKDGSAERTELFPEYKANRDETPDAIRVAVPWIQDILKAMHIPCIERSGLEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175 DDII T AE +G+ V +++ DKD QLV+ T +Y + + + I+ WGIP Sbjct: 115 DDIIGTLARQAEAQGYQVYMVTPDKDFGQLVTENTFMYRPAR-----MGNGIEIWGIPEV 169 Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 PE+++ + GD+ DNIPG PG+G KTA + ++G+LE +L N ++K Sbjct: 170 QKRFGVERPEQVIDYLGMMGDASDNIPGFPGVGDKTAKKFIDQFGSLEGLLENTEQLK-G 228 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 K +E I+E AE +LS+KL + D +T + L + ++ + LEF +L ++ Sbjct: 229 KMKERIIENAELGKLSKKLATICVDCDVTFDEKDFELSMPDSQKVQELFEELEFRRLRDQ 288 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347 + + + P V TTE T ++ + QFS + EQ Sbjct: 289 FLKLFSGETES-GPAV---GTTE-------TAKKQNREAGSGQFSLFE---ADAKGEQVE 334 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 + ++ +S Y + + + + +++ L F T ++D ++ + Sbjct: 335 AYSGRKTIKDVSHL------YQAVGDGMERKLFLKSLMAQNRVCFDTETTSLDPLEAELV 388 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 IA S K L V +++ G E+L L+ FFE++ K+G Sbjct: 389 GIAFSWEAHKG----------FYLPVPEGREAAG------EVLEELRPFFESDTIEKVGQ 432 Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILK 522 N+KYD VL YGI +RG D ML Y+++ H++ +A+ +L+YT I K Sbjct: 433 NLKYDIKVLSTYGIPVRGPLFDTMLAHYLINPD-MRHNMDVLAETYLNYTPVPISDLIGK 491 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K+ + + + E+A+E++++ LQL L P+L + +++ ++ P++ V++ Sbjct: 492 KGKNQLSMRDVPLEDQTEYAVEDADITLQLAQLFGPELREAQTEELFKEIEIPLLRVLAD 551 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641 ME+ GI +D L+++S E+ K++ L IY+ +GE+FN+ SPKQLG+ILF K+K Sbjct: 552 MELEGINLDTGFLEKLSGELEKDIEGLVGKIYEAAGEEFNIGSPKQLGEILFDKMKLVDK 611 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT+TGQ+ +TA+D+ ++ I++ +L++R L+K+KSTY D+LP + T RVHT Sbjct: 612 PKKTRTGQY-STAEDVLSGLAKEHEIVQMVLDYRGLTKLKSTYVDALPQQVAPSTGRVHT 670 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y TGRL+S PNLQNIPI+T+ G++IR+AFI P +L++ADYSQIELRI+A Sbjct: 671 DYMQTVAATGRLSSNNPNLQNIPIRTERGRQIRKAFIPRSPEYQLLAADYSQIELRIIAA 730 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ + + F+ DIH AA++F V +E+V+ + R +AKT+NF IIYG+S F L+ Q Sbjct: 731 LSEEDTMIESFKRGEDIHAATAAQVFQVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQ 790 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 + R+EA + I Y+ +P + YI +F R++GYV+T+ GRR + +IN + +R Sbjct: 791 TNLSRTEAKELIDTYYKTYPKLRNYISDQIDFAREHGYVQTVLGRRRYLKDINGSNAVVR 850 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQGSAADI + AMI +++ L + T+MLLQ+HDELVF+ E T Sbjct: 851 GAAERNAVNAPIQGSAADIIKIAMIRIYQKLREGNFKTRMLLQVHDELVFDCYRGEADTV 910 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 S +I ME A L VPL V++ W E Sbjct: 911 SALIKSEMESA----YELAVPLVVDMGFGETWLE 940 >gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945] Length = 930 Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust. Identities = 356/986 (36%), Positives = 533/986 (54%), Gaps = 70/986 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L ++ +AS IK K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIK-GKVGENLQAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R + Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E + E+ Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK N KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ EK L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP+ I+ + RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPDMISPQDNRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +PP ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG E VSP+ RR+AKTINF +IYG+ + LA L I A Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++ K GYVET+FGRR++ +I + ++ R ERAAI Sbjct: 786 KNFIDRYFARYPGVAEYMQRAKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI V L D + +K+++Q+HDELV EV E E+ + + M Sbjct: 846 NAPMQGTASDLIKRAMIDVRNWLSD-GIDSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 K + L VPL + V NW+E Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928 >gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17] gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17] Length = 926 Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust. Identities = 356/978 (36%), Positives = 534/978 (54%), Gaps = 72/978 (7%) Query: 7 LFLVDGSSFIYRAFYATPLL--SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + LVDGSS+++RA++A P L S+ H P AI G M+ +L + S V+ Sbjct: 9 VVLVDGSSYLFRAYHALPPLMTSKNH---PTGAIKGVIAMIRRL----DLDFPGSKIVVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFRN++YPDYKANRP +PE L Q+ + + G+P + + G EADD+I T Sbjct: 62 FDAKGKTFRNDLYPDYKANRPPMPEDLAVQIEPIHQIVRHMGLPLLIVDGVEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 + A +G V + + DKD+ QLVS L +T+ +D V +K+G+ P +++ A Sbjct: 122 AHEATSKGIDVVVSTGDKDMAQLVSAHVTLINTMTNTYMDNAGVEEKFGVTPAQIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD +DNIPG+ G KTA LQEY N++N++ NA IK K E + + ET LSR Sbjct: 182 LVGDKVDNIPGVNKCGPKTAVKWLQEYQNIDNLMANADDIK-GKVGEYLRDARETLPLSR 240 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 L ++ DV + LE L + N L+ + E +N + + D P V Sbjct: 241 TLATIKLDVELEFGLEDLQEREQNNSALLELFREYELRSWVNELES---LDPQTTGPAVA 297 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 K A + D +T + Q+S S Q K Sbjct: 298 -------KSGADHSTSDHNT----------AHQSSPAESAQPRDK--------------- 325 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 Y+ I N ++ +WV++L+ +F T ++ ++ + + SF V Sbjct: 326 --HYSIITNQAELDEWVERLKASELFAFDTETTSLRYMAAEVVGV-----------SFAV 372 Query: 425 ETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 + F V D G L ++ +L+ LK E+ K+G N+KYDK VL + I Sbjct: 373 QP-FEAAYVPFCHDYMGAPEQLDRDTVLAQLKPLLESPDHKKVGQNLKYDKNVLANHDIC 431 Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQV 538 + G ED M+ SYVL+S S H++ ++A +L + T + + + +++ + Sbjct: 432 LEGIAEDTMVQSYVLNSVSSRHNMDALALHYLGEETTTFESLAGKGAKQLTFNQLELDKA 491 Query: 539 QEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ L+L LRP+L KL VYE +D P++ V+S+ME G I L+Q Sbjct: 492 GPYAAEDADITLRLHQALRPQLAATGKLQSVYEDIDLPLVPVLSRMEQRGTLISASTLRQ 551 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E+++ + LE Y+ +GE FNL SPKQL I + KL P KT G +TA+ + Sbjct: 552 HSQELAERMAELETAAYEAAGETFNLGSPKQLQVIFYEKLGLPVLKKTPKGA-PSTAEPV 610 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 Q + + + +LE R LSK+KSTY D+LP I+ RT RVHT Y A T TGRL+S E Sbjct: 611 LQELAHRHELPRLLLEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGRLSSSE 670 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+++ G++IR+AF++ KL++ADYSQIELRI+AH+++ L F DI Sbjct: 671 PNLQNIPIRSEQGRRIRQAFVAEKGYKLLAADYSQIELRIMAHLSEDKGLLTAFAKGEDI 730 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H+ AAE+FGV +E+V+ RR AK INF +IYG+S F LA QL + R A YI RYF Sbjct: 731 HKATAAEVFGVTLEEVNTDQRRSAKAINFGLIYGMSAFGLARQLDVERKVAQQYIDRYFE 790 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ Y++ + ++GYVET+FGRR++ EIN+ ++ ER AINAP+QG+AA Sbjct: 791 RYPGVLTYMDNIRKQAHEDGYVETLFGRRLYLPEINTRNKQLQQAAERTAINAPMQGTAA 850 Query: 898 DITRRAMISVHK-SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 DI + AMI V + L ++ + +M +Q+HDEL+ EV EE + + ++ M A Sbjct: 851 DIIKLAMIEVERWLLAEYPDSARMTMQVHDELIIEVKEEAVEVVREGLIKRMSGAA---- 906 Query: 957 NLRVPLKVNIKVSNNWQE 974 L VPL V V +NW + Sbjct: 907 ELAVPLLVEAGVGDNWDQ 924 >gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002] gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002] Length = 887 Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust. Identities = 330/943 (34%), Positives = 510/943 (54%), Gaps = 69/943 (7%) Query: 41 FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL 100 NML +L KE + A +FD TFR+E+YPDYKANRP +PE L Q+ V Sbjct: 1 MVNMLRRL----EKEVRFDYSACVFDAKGKTFRDELYPDYKANRPSMPEELASQITAVHD 56 Query: 101 ATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE 160 QA G P + + G EADD+I T AE G V + + DKD+ QLVSP L +T+ Sbjct: 57 VVQASGWPILVVDGVEADDVIGTLARQAEAAGMQVIVSTGDKDIAQLVSPVVTLVNTMTN 116 Query: 161 EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220 E +D V +K+G+PP ++ L GD +DN+PG+ G KTA L++YG+LE ++ N Sbjct: 117 ETLDEGGVKEKFGVPPGLIIDYLTLIGDKVDNVPGVDKCGPKTAVKWLEQYGSLEAVMAN 176 Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPL----EHLILEDCNGPRLISFL 276 A+ I K +N+ + R+L+ ++ DVP+ L E L+ + + P+LI Sbjct: 177 AAAISGKVG-DNLRAALDWLPKGRELITIKCDVPLDAELPQGMETLLHRERDKPKLIELF 235 Query: 277 KALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336 F + E+ + ++ + Sbjct: 236 TRFGFRSWLR--------------------------------EVSDANGSAAADAAAPAS 263 Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIIT 396 +N E LF + Y ++ + W+ KLE S T Sbjct: 264 ANPGVNGE-----LFGAAEDDEAPAAAVERRYETLLTAAQLDAWLAKLEAAPVVSLDTET 318 Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456 ++D ++ + I+ S + E ++ L+ H + + L+ LK + Sbjct: 319 TSLDQMEARLVGISFSVTEG--------EAAYLPLAHHYA--GVPEQLDLAATLARLKPW 368 Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL-- 513 EN K+G N+KYD+ VL +GI++ G +D +L SYV++S +H++ +A++ L Sbjct: 369 LENPARKKLGQNLKYDRHVLANHGIALAGVADDTLLASYVIES-HLTHNMDDLARRHLGE 427 Query: 514 -SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572 + + +EI I ++ + +A E++++ L+L L KL +L VY + Sbjct: 428 STVSYEEICGKGAKQIGFAEVDIAVASNYAAEDADITLRLNRALAGKL-EGRLASVYRDI 486 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 + P+ +V+ ME G+ ID+ L + S ++ +L LE+ Y +G+ FNL+SPKQL +I Sbjct: 487 ELPVAEVLFAMERNGVLIDRQRLAEQSHQLGSQMLQLEQEAYQQAGQPFNLNSPKQLQEI 546 Query: 633 LFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 LF KL + KT +G + T LEQ+ D+P+ K IL++R L+K+KSTY D LP+ Sbjct: 547 LFGKLGIDTKGVKKTPSGGFSTDESVLEQLAL-DHPLPKLILQYRGLAKLKSTYTDKLPS 605 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750 I T RVHT Y+ A +TGRL+S +PNLQNIP++T G+++R AFI+PP +++SADY Sbjct: 606 LIRPDTGRVHTNYAQAVAITGRLSSSDPNLQNIPVRTAEGRRVREAFIAPPGHRIVSADY 665 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELRI+AH++ + F + DIH+ AAE+FGV E+V+ + RR AK INF +IY Sbjct: 666 SQIELRIMAHLSDDANMLAAFASGEDIHKTTAAEVFGVTREQVTSEQRRAAKAINFGLIY 725 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 G+S F LA QL I R+ A YI RYF RFPG+ +Y+++T+ R+ GYVET+FGRR++ Sbjct: 726 GMSAFGLAAQLDIERNAAQQYIDRYFMRFPGVADYMQRTREMAREQGYVETVFGRRLYLP 785 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 EI + R+ ERAAINAP+QG+AAD+ + AMI+V + L L +K+++Q+HDELV Sbjct: 786 EIRASNPGRRSGAERAAINAPMQGTAADLIKLAMIAVQRWLVAEGLGSKLIMQVHDELVL 845 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 EVPE E+ + + M L+VPL + +W+ Sbjct: 846 EVPEAELARVKERLPQIMAGVA----ELKVPLLAEVGAGESWE 884 >gi|331014880|gb|EGH94936.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 921 Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust. Identities = 343/992 (34%), Positives = 537/992 (54%), Gaps = 102/992 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L R++ S AV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAAL--------LLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA + + Y NLE + R K + E+ Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIR-GAKTLAAKLEEHRA 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ D +PL+ +E +L C Sbjct: 240 MAFLSYELATIKID----VPLD------------------IELEQL--------HC---- 265 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355 +E DRD ++ +F S + + ++++ Q+L +E Sbjct: 266 -------------------SEPDRDKLMELYAELEFKSWIEDLQR-DAKRAGQELVVEE- 304 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +Y I+ W++KL+ +F ++ DA ++ + ++ + + Sbjct: 305 ---PTVAAKEAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 360 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + ++ + +D+ +L LK E+ + +K+G + K+ + Sbjct: 361 PHEAAYIPLTHSYMGVPQQLDRDT---------VLKTLKPLLEDPNKIKVGQHAKFAINL 411 Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 L GI ++G D +L SYVLDS + HD S+ K+L++T ++I Sbjct: 412 LANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGK 471 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582 + D+I+ Q +A E +++ L+L + +L + L V ++ P++ V+++ Sbjct: 472 GAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEMPLVPVLAR 531 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +E G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPIL 591 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 +KT TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Sbjct: 592 SKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 651 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 K L F N LD+HR A+E+FGV +E V+ MRR AK INF +IYG+S F LA Q+ Sbjct: 712 KDEGLLHAFRNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 771 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R ++ Y+ RYF R+PG+ +Y+E+T+ + G+VETIFGRR++ +IN+ S+RN Sbjct: 772 VDRKQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNG 831 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 +R AINAP+QG+AADI ++AM++V+ L++ L +++LQ+HDELV EV E+ + S+ Sbjct: 832 AQRMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISE 891 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I M A L VPL V + V NNW E Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919 >gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62] gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62] Length = 930 Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust. Identities = 357/986 (36%), Positives = 535/986 (54%), Gaps = 70/986 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L+ ++ +A IK K EN+ Sbjct: 173 DQIRDYLALIGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHAPEIK-GKVGENLQAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R A + Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HTELSDG--------------IESLRRTAPKW---- 268 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 + +D + E E + +T F S S + + +N+E +K R Sbjct: 269 ---AQLAVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAEIPSEK----RA 321 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +K + P D Y + + KL + T ++DA +++ + I+I+ Sbjct: 322 EKATA-PEKLD-YQAVTTEAQFAALLDKLAKADTIGIDTETTSLDAMNAELVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK EN KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSLTAVPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ D ML SY+++S H + ++ +WL T + + I Sbjct: 429 VFANYGIALNNIAGDAMLASYIIES-HLGHGLDELSGRWLGLETITYESLCGKGAKQISF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ +K L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIGQATEYAAQDADFALRLEARLRAQMD-DKQLEMYEKMELPVAQVLFEMECNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ R RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPRDNRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +PP ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F++ D+HR AAE+FG E VSP+ RR+AKTINF +IYG+ + LA L I A Sbjct: 726 AAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAAI Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI+V L D + +K+++Q+HDELV EV E E+ + + M Sbjct: 846 NAPMQGTASDLIKRAMINVRNWLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 K + L VPL + V NW+E Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928 >gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries] gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries] Length = 864 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 330/969 (34%), Positives = 529/969 (54%), Gaps = 138/969 (14%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 +VD F++RA+YA P L G P+ + GF N+L K L A + AV+FD Sbjct: 20 VVDAYGFLFRAYYALPQLHTSQ-GAPIGGVYGFINILLKHLLTHN----ADYIAVVFDTG 74 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 + FR+ +YP YK NRP++PE LL Q +R A A GI + E+ FEADD+IAT + Sbjct: 75 SKNFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDVIATLSTKY 134 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 E V +I+ DKDL+QL+ ++D +K + + E+V+ K+G+ P+K++ + ALTGD Sbjct: 135 ASEDVQVRVITADKDLLQLMGEHVQIFDPIKNKYLTDEYVVDKFGVTPDKLLDVLALTGD 194 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248 + DNIPG+P IG KTAA L+ ++G+L+N+L A +++QKK R++++ Sbjct: 195 ASDNIPGVPSIGVKTAARLINQFGSLDNVLSCAEKVEQKK--------------CREMLI 240 Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV--LDI 306 D + L+ D L+S +A+EF +N+ A D+ + + ++ Sbjct: 241 QHAD-------QALLSRD-----LVSLQRAVEFDGDLNKYAKKLP-DSEQLLAFLEKYEL 287 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 N+ K I+ SL + + + P+ Sbjct: 288 NSLRGK-------------IEQCYQISLESPDRQGGAGEMPES----------------- 317 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +T+D +++K E +G + AFH+K IA T+++ Sbjct: 318 ------HTEDPVAFLRKCENVG----------LLAFHAK---IADGTINE---------- 348 Query: 427 IFIDLSVHTSQDS--TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 LSV ++ T + + + ++ ++ LKI H+ K ++ R+ + Sbjct: 349 ----LSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVHDAK----LIMRHFPDLG 400 Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544 F+D+MLMSY LD+G H +A +A ++L Q+ Sbjct: 401 AFDDVMLMSYSLDAGSHDHSLAGMAYRYLH------------------------QKFPAR 436 Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 + ++QL ++R KL++++L VY +L++P++ V+ +M+ G+++D ++LKQ+S + Sbjct: 437 MACTLVQLHGVMRNKLLLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDFHG 496 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCG 663 ++ SLE+ IYDL+G FN++S +QLG +LF ++ S AK +G + T A+ L ++ Sbjct: 497 SIRSLEKEIYDLAGCTFNVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELAAE 556 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 I +L+WR SK+KSTY D+L + T+RVHT YS+ ST TGR++S PNLQNI Sbjct: 557 GVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQNI 616 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 PI++ G +IR+AF++ KL+SADYSQ+EL+I+AHIA + F DIH + A Sbjct: 617 PIRSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQ 676 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 +IFG + P++RR AK+INF IIYG+SPF LA + I R EA+ Y+ +YF +P I Sbjct: 677 QIFGDGV--TDPELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQYFRSYPEIK 734 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 Y+E K + R+ GY T FGR+ + INS + ++R ERAAINAPIQG+AAD+ ++A Sbjct: 735 NYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVKKA 794 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 MI++ LE ++LQ+HDEL+ EVPE + ++++ ME N VPLK Sbjct: 795 MINLRNKLE----VGAIILQVHDELLVEVPESHVDRVAKLMKEVMEGVA----NFSVPLK 846 Query: 964 VNIKVSNNW 972 V+I V ++W Sbjct: 847 VDIGVGSSW 855 >gi|213971016|ref|ZP_03399137.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1] gi|301385579|ref|ZP_07233997.1| DNA polymerase I [Pseudomonas syringae pv. tomato Max13] gi|302058837|ref|ZP_07250378.1| DNA polymerase I [Pseudomonas syringae pv. tomato K40] gi|302132134|ref|ZP_07258124.1| DNA polymerase I [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924252|gb|EEB57826.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1] Length = 921 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 343/992 (34%), Positives = 536/992 (54%), Gaps = 102/992 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L R++ S AV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPESPLAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAAL--------LLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA + + Y NLE + R K + E+ Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIR-GAKTLAAKLEEHRA 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ D +PL+ +E +L C Sbjct: 240 MAFLSYELATIKID----VPLD------------------IELEQL--------HC---- 265 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355 +E DRD ++ +F S + + ++++ Q+L +E Sbjct: 266 -------------------SEPDRDKLMELYAELEFKSWIEDLQR-DAKRAGQELVVEE- 304 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +Y I+ W++KL+ +F ++ DA ++ + ++ + + Sbjct: 305 ---PTVAAKEAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 360 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + ++ + +D+ +L LK E+ + +K+G + K+ + Sbjct: 361 PHEAAYIPLTHSYMGVPQQLDRDT---------VLKTLKPLLEDPNKIKVGQHAKFAINL 411 Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 L GI ++G D +L SYVLDS + HD S+ K+L++T ++I Sbjct: 412 LANCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGK 471 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582 + D+I+ Q +A E +++ L+L + +L + L V ++ P++ V+++ Sbjct: 472 GAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEMPLVPVLAR 531 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +E G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPIL 591 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 +KT TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Sbjct: 592 SKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 651 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 K L F N LD+HR A+E+FGV +E V+ MRR AK INF +IYG+S F LA Q+ Sbjct: 712 KDEGLLHAFRNDLDVHRATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 771 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R ++ Y+ RYF R+PG+ +Y+E+T+ + G+VETIFGRR++ +IN+ S+RN Sbjct: 772 VDRKQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNG 831 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 +R AINAP+QG+AADI ++AM++V+ L++ L +++LQ+HDELV EV E+ + S Sbjct: 832 AQRMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISG 891 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I M A L VPL V + V NNW E Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919 >gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] Length = 932 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 357/988 (36%), Positives = 547/988 (55%), Gaps = 86/988 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + I+R +YA P ++ K GL +AI GF N L ++++ + + H AV Sbjct: 5 LFLLDAYALIFRGYYAFIKNPRINSK--GLNTSAILGFMNSLLEVIKKEKPD----HLAV 58 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD R +++ DYKANR + PE + +P + +A IP IE +G+EADDII T Sbjct: 59 AFDKGGSVERTKLFADYKANREETPEAIRLAIPYIHEILKALHIPIIEKEGYEADDIIGT 118 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178 + AEK+ + V +++ DKD QLVS +Y + E ++ V +K+ + P + Sbjct: 119 LSKQAEKQNYQVYMVTPDKDYAQLVSDNIFIYRPSRGGNDVEIWGVKEVQEKFEVQNPLQ 178 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ + GD++DNIPG+PG+G KTA LL ++G++EN+L + ++K K RENI E Sbjct: 179 VIDFLGMMGDAVDNIPGLPGVGEKTAKKLLADFGSMENLLAHTDQLK-GKLRENIESNKE 237 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 LS++L + DVP+ E + + + + + LEF +L+ TY + Sbjct: 238 KGILSKQLATIMLDVPVRFDEEDFAMSEPDFEAVGRIFEELEFRQLLQNFLRTYQPEMPT 297 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 P V TE + +++ T+ D F+ + K NS TP +L Sbjct: 298 APPPVTGNKPTEGQ-LSLFTQGDL--------FAQPQVMSEKKNSTNTPH------FYQL 342 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 + P+ + + + F T +++A ++ + I+ K Sbjct: 343 ADTPMAQQLLLQNLLQQT------------EVCFDTETTSVNALEAELVGISFCWSAHKG 390 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 + T K TK +L + FFENE K+G N+KYD VL Sbjct: 391 ---------------YYVPFPTDKVEATK-LLETFRPFFENERIGKVGQNLKYDLKVLQN 434 Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI------LKSRKS--SIP 529 Y I +RG D M+ Y+L+ H++ +++ +L+YT I K+++S ++P Sbjct: 435 YNIEVRGALFDTMIAHYLLNPDMR-HNMDILSETYLNYTPIAIESLIGKGKAQRSMRTVP 493 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLR---PKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 +D QV+E+A+E+++V QL + + PK+ EK +Y L+ P+I V++ ME Sbjct: 494 LD-----QVKEYAVEDADVTWQLKNVFKEEMPKVNAEK---IYTDLEAPLIKVLAAMERE 545 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-T 645 G+ +D LK+ + + ++ LE I + +GE FNL+SPKQLGDILF KLK S K T Sbjct: 546 GVNLDVPFLKEYAKTLDADIAQLEATIAEQAGESFNLASPKQLGDILFEKLKIDSKPKKT 605 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTGQ+ T+ + L + I+ +ILEWRQ+ K+KSTY D+LP +NK T RVHT Y Sbjct: 606 KTGQYATSEEVLAPF-ASKHKIVADILEWRQVQKLKSTYVDALPLEVNKLTGRVHTTYMQ 664 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKI 764 TGRL+S PNLQNIPI+T GQ++R+AFI+ P L+SADYSQIELRI+A +++ Sbjct: 665 TVAATGRLSSNNPNLQNIPIRTPRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEE 724 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 + F + DIHR AA++F V +E+V+ + R HAKT+NF IIYG+S F L+ Q + Sbjct: 725 HNMIDSFLRNEDIHRSTAAKVFHVPLEEVTREQRSHAKTVNFGIIYGVSAFGLSAQTNLS 784 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 RSE+ + I Y+ +P + YI K F +++GYVET+ GRR + +I+S +R E Sbjct: 785 RSESKELIDTYYATYPNLRNYISKQIQFAQEHGYVETVLGRRRYLPDIHSRNQVVRGAAE 844 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R A+NAPIQGSAADI + AMI + L +L T+MLLQ+HDELVF+VP+ E+ +I Sbjct: 845 RNAVNAPIQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVFDVPKTELNIVKPLI 904 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972 +ME A NL VPL ++ V +NW Sbjct: 905 KEAMESA----FNLAVPLVADLGVGDNW 928 >gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] Length = 920 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 345/985 (35%), Positives = 550/985 (55%), Gaps = 87/985 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA +P ++ K GL +AI GFCN L ++L + +H AV Sbjct: 4 LFLLDAYALIYRSYYAFINSPRINSK--GLNTSAIMGFCNTLNEVLTKEQ----PTHIAV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD+ +TFRNE +P YKA R PE + +P+++ A+ IP ++++GFEADDII T Sbjct: 58 AFDH-GLTFRNEAFPAYKAQREATPEDIKKSVPIIKQILGAYHIPCLQVKGFEADDIIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--------DTVKEEKIDIEHVIKKWGIP 175 + K+G +++ DKD QLV +Y +T+ E++I ++ I Sbjct: 117 LAMKSGKKGIDTYMLTPDKDYGQLVGEHVWMYRPRHGGGYETLGEKEICAKYSIDS---- 172 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ + AL GD+ DN PG PG+G KTA L+ ++G++ +L IK K RE + Sbjct: 173 PLQVIDILALMGDTADNFPGCPGVGEKTAIKLINQFGSINEMLQRTQEIK-GKLREKVEN 231 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E ++S+ L +RTDVPI + L+ L +E+ N L L LEF L NR+ Sbjct: 232 AIEDIKMSQFLATIRTDVPIDLKLDDLQVEEPNETELAKILHELEFKTLANRM------- 284 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 +N ++N +T T++ +L +++S NS+ P+ E L Sbjct: 285 ----------LNKSKN------------STKNTNKQLNLFEESSP-NSQVDPKNKSFESL 321 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + +S Y I N +++++ T S T + +A ++ + ++ S Sbjct: 322 KTVSH------EYKLIDNEEEMRKLCDFFLTNKILSLDTETTSTNAMEAELVGLSFSVAP 375 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + ++ + + Q T +I++ K +ENE LK+G NIKYD V Sbjct: 376 H--------QAFYVPIPANREQ--------TIKIVNLFKPAYENEAILKVGQNIKYDMEV 419 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPI 530 L RYGI ++G D M+ Y+L H++ +A+ +L Y +E++ R K + Sbjct: 420 LSRYGIELKGNLFDTMIAHYLLQP-ELRHNMDYMAEVYLRYQTVHIEELIGPRGKGQKNM 478 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ + + E+A E++++ LQL +L PKL ++ ++ +++ P++ V++QME+ G++I Sbjct: 479 RDLAPNDIYEYACEDADITLQLKNILEPKLKEREVDQLFYQMEMPLVRVLTQMEMNGVRI 538 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQ 649 D L++VS +K + LE I+ L+GE FN+SSPKQ+GDILF KL+ KTKTGQ Sbjct: 539 DTKALQEVSESFTKRMNDLEAQIHQLAGESFNVSSPKQVGDILFEKLQIAEKPKKTKTGQ 598 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T+ ++L++ G N I+ IL++R L K+ TY D+LP IN +T +HT ++ T Sbjct: 599 FVTSEEELQKYATG-NEIVTLILDYRGLKKLLGTYVDALPKLINPQTGHIHTSFNQTVTA 657 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIP++ + G++IR+ FI SADYSQIELR++AH++ + + Sbjct: 658 TGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHMIE 717 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F+ DIH AA+++G ++ V+ R AK NF IIYGI+ F LA +L I R EA Sbjct: 718 AFQEGYDIHAATAAKMYGKEMKDVTRDERTKAKRANFGIIYGITVFGLAERLGIDRGEAK 777 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 I YF FP + Y+E+ K+ R+ GYVET F RR + +INS +++R ER AIN Sbjct: 778 QLIDGYFTTFPQVQSYMEQAKDMAREKGYVETFFHRRRYLPDINSQNATVRGFAERNAIN 837 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 APIQGSAADI + AMI +++ + + +KM+LQ+HDEL F V E +I++ M+ Sbjct: 838 APIQGSAADIIKVAMIRIYERFKRENIQSKMILQVHDELNFSVLPSEKEQVERIVLEEMQ 897 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L+VPL + +NW E Sbjct: 898 NA----YQLKVPLVADAGWGHNWLE 918 >gi|302188971|ref|ZP_07265644.1| DNA polymerase I [Pseudomonas syringae pv. syringae 642] Length = 921 Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust. Identities = 346/992 (34%), Positives = 535/992 (53%), Gaps = 102/992 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L R++ S AV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVPGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA LL Y NL+ + R K + E+ E Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVATLPIR-GAKTLAAKLEEHRE 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ D +PL+ +E +L C Sbjct: 240 MAFLSYELATIKID----VPLD------------------IELDQL--------HC---- 265 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355 E DRDT ++ +F S + + ++++ Q+L +E Sbjct: 266 -------------------GEPDRDTLMELYAELEFKSWIEDLQR-DAKRAGQELTVEE- 304 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +Y I+ W++KL+ +F ++ DA ++ + ++ + + Sbjct: 305 ---PTVEAREAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGLSFA-IQ 360 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + + ++ + +D+ +L LK E+ +K+G + K+ + Sbjct: 361 THEAAYIPLTHSYMGVPQQLDRDT---------VLKALKPLLEDPDKIKVGQHAKFAINL 411 Query: 476 L--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 L GI ++G D +L SYVLDS + HD S+ K+L++T ++I Sbjct: 412 LANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGK 471 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582 + D+I+ Q +A E +++ L+L + +L + L V ++ P++ V+++ Sbjct: 472 GAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVLAR 531 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +E G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPVL 591 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 +KT TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT R+HT Sbjct: 592 SKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTS 651 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+A Sbjct: 652 YHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLA 711 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L F N LD+HR AAE+FGV +E V+ MRR AK INF +IYG+S F LA Q+ Sbjct: 712 QDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG 771 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R ++ Y+ RYF R+PG+ Y+E+T+ + G+VETIFGRR++ +IN+ S+R Sbjct: 772 VDRKQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKG 831 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAP+QG+AADI ++AM++V+ L++ L +++LQ+HDELV EV E+ + S+ Sbjct: 832 AERMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQISE 891 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I M A L VPL V + V NNW E Sbjct: 892 QIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919 >gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87] gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87] Length = 941 Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust. Identities = 344/996 (34%), Positives = 552/996 (55%), Gaps = 79/996 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFLVD + I+R +YA P ++ K G +AI GF N L+ +++ + + Sbjct: 1 MAAQKRLFLVDAYALIFRGYYAFIKNPRINSK--GFDTSAIMGFMNSLFDVIRREKPD-- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 H AV FD R E++ DYKANR PE ++ +P ++ +A IP +E+ G EA Sbjct: 57 --HLAVCFDKEGSEVRTELFSDYKANRDATPEPIMQGIPYIQSILKAMHIPVVELPGCEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175 DDII T AEKE + V +++ DKD QLVS +Y + + + I+ WGIP Sbjct: 115 DDIIGTLAKQAEKENYQVYMVTPDKDFAQLVSENIFMYRPAR-----MGNGIEIWGIPEV 169 Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 PE+++ + GD++DNIPG+PG+G KTA L+++G++E +L N ++K Sbjct: 170 QKKFEVERPEQVIDFLGMMGDAVDNIPGLPGVGEKTAKKFLKQFGSMEELLANTDQLK-G 228 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 K RE + AE LS+KL + D + E L + ++ LEF +L ++ Sbjct: 229 KMREKVETNAEQGILSKKLARIIIDCDVKFHAEDYELSMPDSEKVQELFDELEFRRLKDQ 288 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL-SDQTSKINSEQT 346 ++ + N V + +N + T QFS D + KI S + Sbjct: 289 FIKLFNGEEDNQTQVSNSPSAKKN-----------EQTAGAGQFSLFGGDSSEKIESTNS 337 Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406 + L P Y K+ ++ ++QKL S F T +++ ++ Sbjct: 338 --------RKTLKDTP---HVYQKVDTGLGLRLFIQKLMKQKSVCFDTETTSLNPLEAQL 386 Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466 + IA S K ++ +D+ K T++++ L+ FFE+ KIG Sbjct: 387 VGIAFSWEGGK--------GYYLPF-----EDNIEK---TQQLIELLRPFFESPEIEKIG 430 Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL---- 521 N+KYD VL +YGI + G D M+ Y+++ H++ +A+ +L+YT + I Sbjct: 431 QNLKYDIKVLDKYGIKVEGPTFDTMIAHYLINPDM-RHNMDILAETYLNYTPQPISELIG 489 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K+ + + ++ E+A E++++ QL +L K ++ ++ P+++V++ Sbjct: 490 KKGKNQKSMRDVPLAEQTEYAAEDADITFQLKEFFEKELDEAKTRKLFNEIEMPLVEVLA 549 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-P 640 MEI GI +D D LK++S + +++ LE IY+ +GE+F +SSPKQLG ILF KL Sbjct: 550 DMEIEGINLDLDFLKKLSEALDRDIKELEAKIYEAAGEEFKISSPKQLGIILFEKLALVK 609 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 KTKTGQ+ +T++D+ ++ I++++L++R L K+++TY D+LP + K + RVH Sbjct: 610 KPKKTKTGQY-STSEDVLSYLAPEHEIVQHVLDYRGLVKLQNTYVDALPGQVEKSSGRVH 668 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRIL 758 T Y TGRL+S PNLQNIPI+T+ G+++R+AFI P + L++ADYSQIELRI+ Sbjct: 669 TDYVQTIAATGRLSSNNPNLQNIPIRTERGRQVRKAFI-PRSDDYVLLAADYSQIELRII 727 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 A +++ + + F++ DIH A+++F V +E+V+ + R +AKT+NF IIYG+S F L+ Sbjct: 728 AALSEEETMIKAFKDGEDIHASTASQVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLS 787 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 Q + RSE+ + I Y+ +P + YI + R++GYV TI GRR + +INS + Sbjct: 788 NQTSLSRSESKELIDTYYKTYPKLSNYIADQVAYAREHGYVSTILGRRRYLKDINSQNAV 847 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 +R ER A+NAPIQGSAADI + AMI++HK L + KL TKMLLQ+HDELVF+V + E+ Sbjct: 848 VRGAAERNAVNAPIQGSAADIIKIAMINIHKKLGEEKLQTKMLLQVHDELVFDVYKPELD 907 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++I ME A L VPL V++ V +W E Sbjct: 908 QVKKLIKSEMENAY----QLNVPLDVDLGVGQDWLE 939 >gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 933 Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust. Identities = 350/987 (35%), Positives = 529/987 (53%), Gaps = 91/987 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA+YA P L+ G A+ G NML LL + S AV Sbjct: 20 ENPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYKP----SQMAV 74 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFRN++Y +YKA+RP +P+ L Q+ PL R+ +A G+P + I G EADD+I Sbjct: 75 VFDAKGKTFRNDMYEEYKAHRPAMPDDLRSQIEPLHRI-IRALGLPLVCIPGVEADDVIG 133 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T + A KEG AV I + DKD+ QLV L +T+ + V +K+G+ PE ++ L Sbjct: 134 TISTQASKEGRAVLISTGDKDMAQLVDENVTLINTMTNTIMGPSEVTEKFGVGPELIIDL 193 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GD DNIPG+PG+G KTA +L G+++ IL ++ + K + E+ Sbjct: 194 LALQGDKADNIPGLPGVGEKTALAMLTGAGSIDKILAAPEKMPELGFRGSKTMPAKLAEH 253 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + +LS +L ++ DV + + L + + LI +EF + + V Sbjct: 254 GDMLKLSYELATIKLDVELEQDWKDLTIAPADKDELIKCYGEMEFKRWLAEV-------- 305 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 + SS S QTS E Q + E Sbjct: 306 -----------------------------LDNRSGSSASTQTSTEEDELPKQDIKTE--- 333 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 Y+ I+ ++ +W+ KL + T +++ +K + + Sbjct: 334 -----------YSTILTHDELDEWIDKLSKAELFAVDTETTSLNYMEAKLVGL------- 375 Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 SF VE ++ L+ H D+ + E L+ LK EN K+G N+KYD Sbjct: 376 ----SFAVEAGKAAYLPLA-HDYLDAP-QQLNQAEALAKLKPLLENPEIKKVGQNLKYDM 429 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 +L GI ++G D ML SYV +S S H++ +A K+L + +EI + Sbjct: 430 SILANVGIKLQGIAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGAKQLT 489 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGI 588 ++IS +A E++++ L+L L P+L E +L ++ ++ P++ V+S ME G+ Sbjct: 490 FNQISLEVAAPYAAEDADITLRLHQHLWPRLQKEPELASIFTEIELPLVQVLSDMERQGV 549 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ID LL Q S E+++ + LE+ Y+++GE FNLSSPKQL + F KL +P KT G Sbjct: 550 LIDSMLLGQQSEELARTIDELEQKAYEIAGESFNLSSPKQLQVLFFEKLGYPIIKKTPKG 609 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K IL+ R L+K+KSTY D LP +N +T RVHT Y A+ Sbjct: 610 APSTAEEVLVELAL-DYPLPKIILQHRSLAKLKSTYTDKLPLMVNAQTGRVHTSYHQANA 668 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S EPNLQNIPI+T+ G++IR AFI+ +K+++ADYSQIELRI+AH+++ L Sbjct: 669 ATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAREGRKVLAADYSQIELRIMAHLSQDKGLL 728 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIH+ AAE+F V+ +V+ + RR AK +NF +IYG+S F LA QL IPR EA Sbjct: 729 TAFAEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRGEA 788 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI YF R+PG+ Y+E+T+ GYV T++GRR++ I + R ERAAI Sbjct: 789 QKYIDTYFKRYPGVLNYMEETRAIAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAI 848 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI ++AMI+V + + +++Q+HDELVFEV ++ + + Sbjct: 849 NAPMQGTAADIIKKAMINVADWIANETDGEITLIMQVHDELVFEVDSDKAEALQEKVCQL 908 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M +A +L V L + +NW++ Sbjct: 909 MAEAA----DLDVELLAEAGLGDNWEQ 931 >gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14] gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14] Length = 920 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 351/981 (35%), Positives = 540/981 (55%), Gaps = 79/981 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA P ++ K GL +AI GFCN L ++L KE+ ++ V Sbjct: 4 LFLLDAYALIYRSYYALLRAPRINSK--GLNTSAIMGFCNTLNEVLT---KEN-PTYIGV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD+ TFR++ +P YKA R + PE + +P+++ +A+ IP ++ GFEADDII T Sbjct: 58 AFDH-GKTFRHDAFPAYKAQREETPEDIKASVPIIKDILRAYKIPILQADGFEADDIIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPE-KM 179 A ++G +++ DKD QL+ +Y +I + + +K+GI ++ Sbjct: 117 IAIQAGEKGIDTYMLTPDKDYGQLIRKNVKMYRPQHGGGYEILGEKEIAQKYGISSSTQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L AL GDS DN PG PG+G KTAA L+ ++G++EN+L N S++K K +E + E Sbjct: 177 IDLLALMGDSADNFPGCPGVGEKTAAKLINQFGSVENLLNNTSQLK-GKLKEKVENAVED 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 ++S L +RTDVP I +E L L++ + +L LEF N++ Sbjct: 236 IKMSYFLATIRTDVPTDIKMEDLKLQEPDADKLDEIFTELEFKSFKNKI----------- 284 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 +N +ENK E+D ++ + ++S S E ++ S Sbjct: 285 ------LNKSENKKKNAIQELDL-FAVEQTDGQTISKNAS------------FETIKTHS 325 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 Y I N +D + L T + S T + +A ++ + ++ + + K Sbjct: 326 H------EYKLIDNEEDSKILCDFLLTFKNLSLDTETTSTNAIDAELVGLSFAVEENK-- 377 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 ++ + + I++ K +EN+ LKIG NIKYD VL Y Sbjct: 378 ------AFYVAIPAEREK--------ALRIVNIFKPLYENKKILKIGQNIKYDYEVLLNY 423 Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPIDKIS 534 I ++G D M+ Y++ H++ +A+ +L+Y +E++ + K+ + ++ Sbjct: 424 DIEIKGKMFDTMIAHYLIQP-ELHHNMDYLAEVFLNYQTIHIEELIGPKGKNQKNMRDLN 482 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V E+A E++++ L+L +L PKL K H++ ++ P+I V++ ME GI +D + Sbjct: 483 PKDVYEYAAEDADITLRLKNVLEPKLGEVKAEHLFWEIEMPLIPVLADMERNGICLDTNA 542 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTT 653 L++ S ++ + EE IY+ + EKFN+SSPKQ+GDILF K+ KTKTGQ+ T+ Sbjct: 543 LQETSKVFTERMRKYEEKIYEEAAEKFNISSPKQVGDILFGKMHIMEKPKKTKTGQYVTS 602 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + L+ I NPI++NIL +R + K+ STY D+LP INKRT +HT ++ A T TGRL Sbjct: 603 EEVLQSIRA-KNPIVENILNYRGMKKLLSTYVDNLPTLINKRTGHIHTSFNQALTATGRL 661 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIP++TD G++IR+ FI P SADYSQIELRI+AH++ + + F Sbjct: 662 SSSDPNLQNIPVRTDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSGDENMIEAFRE 721 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIHR AA+I+ I+KV+ R+ AK NF IIYGI+ + LA ++ I SEA D I Sbjct: 722 GFDIHRATAAKIWHEEIDKVTDSQRKKAKQANFGIIYGITTYGLAQRMNISNSEAKDLIT 781 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF FP + Y+EK K R+NGY ETIFGRR + +INS ++R ER AINAPIQ Sbjct: 782 DYFKTFPKVQAYMEKAKEAARKNGYAETIFGRRRYLADINSHNGTVRGFAERNAINAPIQ 841 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 GS ADI + AMI + + +KM+LQ+HDEL F V EE QI++ M+ A Sbjct: 842 GSEADIIKVAMIKIWNRFRQEGIKSKMILQVHDELNFSVYPEEKEKVEQIVIQEMQNA-- 899 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 +L VPL + NNW E Sbjct: 900 --FHLDVPLTADAGWGNNWLE 918 >gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013] Length = 930 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 356/986 (36%), Positives = 534/986 (54%), Gaps = 70/986 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNLSAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV+ L +T+ E +DIE V +K+G+ P Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L+ ++ +AS IK K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLQAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R + Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E + E+ Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNAALVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK EN KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++ +WL T + + I Sbjct: 429 VFANYGIALNGIAGDSMLASYIIES-HLGHGLDELSGRWLGLETITYESLCGKGAKQIGF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ EK L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG E VS + RR+AKTINF +IYG+ + LA L I A Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAAI Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNTNARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI V L D + +K+++Q+HDELV EV E E+ + + M Sbjct: 846 NAPMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 K + L VPL + V NW+E Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928 >gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345] gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345] Length = 918 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 347/984 (35%), Positives = 530/984 (53%), Gaps = 86/984 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA+YA P L+ G A+ G NML LL + S AV Sbjct: 6 DNPLILVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYKP----SQMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFRN++Y +YKA RP +P+ L Q+ PL R+ +A G+P + I G EADD+I Sbjct: 61 VFDAKGKTFRNDMYSEYKAQRPPMPDDLRTQIEPLHRI-IKALGLPLVSISGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A KEG AV I + DKD+ QLV L +T+ + V +K+G+ PE ++ L Sbjct: 120 TIATQASKEGRAVLISTGDKDMAQLVDENVTLINTMTNTIMGPAEVTEKFGVGPELIIDL 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GD DNIPG+PG+G KTA +L G ++ IL ++ + K I+E+ Sbjct: 180 LALQGDKADNIPGLPGVGEKTALAMLTGVGGVDKILAAPEKMPELGFRGSKTMPAKIIEH 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A+ +LS +L ++ DV + L + + LI +EF + + V Sbjct: 240 ADMLKLSYELATIKLDVELEQDWHQLSITPADKDELIKCYGEMEFKRWLAEV-------- 291 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 +NKG DTT T + KL +E Sbjct: 292 ------------LDNKG---------DTTAATES-----------EDDAPAAKLDIEV-- 317 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 Y I++ + + W++KL + T +++ +K + I+ + ++ Sbjct: 318 ----------EYDTILSLEQLDCWIEKLTAAELIAIDTETTSLNYMEAKLVGISFA-VEA 366 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 +E ++D + + L+ E+E+ K+G N+KYD + Sbjct: 367 GKAAYLPLEHDYVDAPEQLDR---------ALVFEKLQPLLEDENLKKVGQNLKYDISIF 417 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 GI++RG + D ML SYV +S S H++ +A K+L + + +EI + ++ Sbjct: 418 ANIGITLRGVQFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQ 477 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 I +A E++++ L+L L +L + +L V+ ++ P+++ +S +E G+ ID Sbjct: 478 IPLETAAPYAAEDADITLRLHQHLWSRLEKLPELASVFTDIELPLVNTLSNIERQGVLID 537 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 LL Q S E+++ + LE ++++GE FNLSSPKQL + F KL +P KT G Sbjct: 538 SMLLGQQSEELARKIDELEHKAHEIAGEPFNLSSPKQLQALFFEKLGYPVIKKTPKGAPS 597 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L ++ D P+ K ILE R L+K+KSTY D LP +N +T RVHT Y A+ TG Sbjct: 598 TAEEVLVELAL-DYPLPKIILEHRSLAKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATG 656 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S EPNLQNIPI+T+ G++IR AFI+P KK+++ADYSQIELRI+AH+++ T L F Sbjct: 657 RLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLSQDTGLLTAF 716 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIH+ AAE+F V+ +V+ RR AK +NF +IYG+S F LA QL IPR+EA Y Sbjct: 717 AEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRAEAQSY 776 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I YF R+PG+ +Y+E+T+ GYV T+FGRR++ I + R ERAAINAP Sbjct: 777 IDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAMRRQAAERAAINAP 836 Query: 892 IQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 +QG+AADI ++AMI++ + +E + + M++Q+HDELVFEV E + + + M Sbjct: 837 MQGTAADIIKKAMINIAQWIETETQGEIIMIMQVHDELVFEVDEAKADSLQAKVCELMAA 896 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A L V L + +NW++ Sbjct: 897 AA----KLDVELLAEAGIGDNWEQ 916 >gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399] Length = 931 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 354/986 (35%), Positives = 531/986 (53%), Gaps = 69/986 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L ++ +AS IK K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIK-GKVGENLQAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R + Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E + E+ Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK EN KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++ +WL T + + I Sbjct: 429 VFANYGIALNGIAGDSMLASYIIES-HLGHGLDELSGRWLGLETITYESLCGKGAKQISF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG E VSP+ RR+AKTINF +IYG+ + LA L I A Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK G+VET+FGRR++ +I + ++ R ERAAI Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI V + L L +K+++Q+HDELV EV E E+ + + M Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVVETELDFVKEKLPQIM 905 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 K ++ VPL + V NW+E Sbjct: 906 AKVGGGLLD--VPLVAEVGVGENWEE 929 >gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] Length = 940 Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust. Identities = 358/998 (35%), Positives = 552/998 (55%), Gaps = 92/998 (9%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA P ++ K G+ +AI GF N L +L K +H AV Sbjct: 3 LFLIDAYALIYRSYYAFIKNPRINSK--GMNTSAIFGFINSLEDVL----KRENPTHIAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E Y YKA R + PE + +P ++ +A+ IP +E+ +EADD+I T Sbjct: 57 GFDPKGPTFRHEAYEQYKAQRQETPEDIRKSVPFIKDIIEAYNIPILEVPRYEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGIPP-EKM 179 AEKEGF V +++ DKD QLVS +Y E + + V+ K+G+ +++ Sbjct: 117 VAKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPRFGGDYEIMGVPEVLDKYGLTSVDQV 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEY 236 + L L GDS DNIPG PG+G KTA LL E+G +EN+L N ++K QKK EN+ Sbjct: 177 IDLLGLMGDSSDNIPGCPGVGEKTAQKLLAEFGTIENLLENTDKLKGSLQKKVMENM--- 233 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC-- 294 E R S+ L ++TDVPI I E N RL+ LEF INR++ + Sbjct: 234 -EQIRFSKFLATIKTDVPIRFDAAKCIREKMNEERLVEIYTELEFRTFINRMSGEPEKVK 292 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI-------NSEQTP 347 + P +T + A I+ S F + + + + N + TP Sbjct: 293 TESKTAPAPAKADTRKKAAPA--------GPIQGSLFEEFATEPTAVPKYSTLANLKSTP 344 Query: 348 QKLFL----ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH 403 +L E+ +L ++ +N +D +F TD +D Sbjct: 345 HTYYLVDTEEKRIELGRF----------LNEQDF------------FAFDTETDGIDPLK 382 Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463 + + ++ + K++ ++ V V +++ K IL++ +N L Sbjct: 383 AGLVGMSFAV---KENEAWYV-------PVPAAREEADK------ILAHFSPALQNPKSL 426 Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KE 519 KIG NIK+D LV+ +YGI + G D M+ Y+L+ H + +A+ +L Y +E Sbjct: 427 KIGQNIKFDILVVRKYGIRIAGPLFDTMIAHYLLNP-ELRHGMDYLAETYLKYKTVRIEE 485 Query: 520 ILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 ++ R + + + + QV E+A E++++ L+L P L E L ++ ++ P+I Sbjct: 486 LIGPRERKQLTMRDVPVVQVAEYAAEDADITLKLKNYFTPCLEKEGLESLFYDIEMPLIY 545 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V+++ME TG+ +D LKQ S E++ L LE+ IY+L+G KFN++S +Q+G++LF LK Sbjct: 546 VLAEMEYTGVTLDTVALKQSSEELTTALKKLEKEIYELAGMKFNINSARQVGEVLFDHLK 605 Query: 639 FPSGA-KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 A KTKTG + T+ + LE++ +P++ +LE+R L K+ STY D+LP IN T Sbjct: 606 IEEKARKTKTGSYSTSEEILEKMRS-KHPVVGKLLEYRGLKKLLSTYIDALPELINPETG 664 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELR 756 ++HT Y+ A T TGRL+S PNLQNIP++ +LG++IR+AF + + SADYSQIELR Sbjct: 665 KIHTSYNQAVTSTGRLSSTNPNLQNIPVRDELGREIRKAFTAENEDCIFFSADYSQIELR 724 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 I+AH+++ + + F + DIH AA+I+G+ +E+V+ MRR AKT NF IIYGIS F Sbjct: 725 IMAHLSQDAHMIEAFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFG 784 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 LA +L IPR+E+ + I+ YF +P I Y++++ ++ GYVETI+ R+ +INS Sbjct: 785 LAERLSIPRAESKELIEGYFKTYPDIRAYMDESIEVAKEKGYVETIYKRKRFLPDINSHN 844 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 + +R ER AINAPIQGSAADI + AM+ + E L +KM+LQ+HDEL F V ++E Sbjct: 845 AIVRGYAERNAINAPIQGSAADIIKVAMVRIFNRFETEGLKSKMILQVHDELNFNVYKDE 904 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + QI++ ME A I L+VPL + NW E Sbjct: 905 LEKVKQIVLDEMENA----IKLQVPLIADCGEGVNWLE 938 >gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z] gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z] Length = 956 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 363/1011 (35%), Positives = 547/1011 (54%), Gaps = 104/1011 (10%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ R SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNSQ-GEPTGAMFGVLNMLKSLISQVR----PSHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR++++ YK++RP +P+ L Q+ + ++ GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRDKLFEQYKSHRPPMPDDLRRQIQPLHDIIRSLGIPLLSVEGVEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A +G V I + DKD+ QLV L +T+ +D + VI+K+GIPPE ++ A Sbjct: 122 AVQASSQGKKVLISTGDKDMAQLVDENIMLINTMSNTLLDRQGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ + N ++ KK E +L Sbjct: 182 LMGDSSDNIPGVAGVGEKTALGLLQGIGSMSEVYANLDKVADLPIRGAKKLGEKLLAAKA 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + E LI+ N L + EF + ++ V + + N Sbjct: 242 DADLSYVLATIKTDVKLDVIPEKLIIGTPNNDELAAQFGRYEFKRWLSEVLSGNNS-MVN 300 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 V+ +N + +TE ++K Sbjct: 301 PPEQVVRVNRYQAAAAVPKTESAVKNSVK------------------------------- 329 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 I+ Y + +Q W++K++ + TD++DA ++ + I+ + Sbjct: 330 ----IDRTLYETVTTPAQLQSWIEKIQQANLIAVDTETDSLDAMTAELVGISFGLENG-- 383 Query: 419 DTSFKVETIFIDLS-VHTSQDS--------------TGKNT-------LTKE-ILSYLKK 455 E +I L+ VH ++ TGK + L +E L+ LK Sbjct: 384 ------EACYIPLAHVHEVAEAEEQAQADLFAEPKATGKTSWHRLPDQLNREDCLARLKP 437 Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWL 513 EN KIG N+KYD + +GI ++G D ML SYVL+S GR H++ +A+++L Sbjct: 438 VLENADIRKIGQNLKYDLTIFANHGIQVQGVAFDTMLESYVLNSTGR--HNMDDLAERYL 495 Query: 514 SY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLH 567 + + + + K+ + DKI +Q E+A E+++V ++L L +L EK L Sbjct: 496 GHQTISFETLAGKGKNQLTFDKIPLAQAAEYAAEDADVTMKLHQTLWAEL--EKTPTLTT 553 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ ++ P++ V+S++E G+ ID L++ S E + L +LE ++++GE FNL+SPK Sbjct: 554 LFKDIELPLVSVLSRIERNGVLIDAQALRKQSQEFGERLTALEAKAHEIAGEAFNLASPK 613 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QL +ILF KL P KT G T + LE++ D+ + K ++E R L+K+KSTY D Sbjct: 614 QLQEILFNKLHLPVLQKTPKGDPSTKEEVLEEL-AFDHELPKLLVEHRGLAKLKSTYTDK 672 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747 LP IN T RVHT Y A T TGRL+S +PNLQNIPI+ + G++IR+AF++ ++I+ Sbjct: 673 LPQMINPHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVARDGYRIIA 732 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIELRI+AH++ L F DIHR A+EIFG+ +E VS + RR AK INF Sbjct: 733 ADYSQIELRIMAHLSGDKGLTTAFVEGRDIHRSTASEIFGIPLEDVSAEQRRSAKAINFG 792 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 +IYG+S F L+ QL I R EA Y+ YF R+P + ++ + + G+VET+FGRR+ Sbjct: 793 LIYGMSAFGLSRQLAISRMEAKKYMDLYFQRYPNVQTFMHDIQEKAKAQGFVETLFGRRL 852 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK----MLLQ 923 + +I S +S R ER AINAP+QG+AADI +RAMI + DH +A M++Q Sbjct: 853 YLPDIKSGNASRRKGAERVAINAPMQGTAADIIKRAMIDI-----DHVIAGDEDILMIMQ 907 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDELVFEV E++ S++I ME A L VPL V V NW E Sbjct: 908 VHDELVFEVRSEKVEFYSELIKQKMETAA----QLDVPLIVEAGVGANWDE 954 >gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3] gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3] Length = 936 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 360/985 (36%), Positives = 549/985 (55%), Gaps = 70/985 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN LVDGSS++YRAF++ P L+ G A+ G NML L+Q SH V Sbjct: 6 ENPFVLVDGSSYLYRAFFSPPHLTNSA-GDATGAVYGVVNMLKSLMQQFS----PSHIVV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+++Y YKANRP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDDMYSQYKANRPSMPDDLRIQIEPLHAVIKAMGLPILIVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + A +G I + DKD+ QLV T L +T+ +DI+ V +K+G+P E ++ Sbjct: 121 LSKQASAKGIKTLISTGDKDMAQLVDEHTLLINTMTNSVLDIDGVTEKFGVPAELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+PG+G KTA +LQ G+++ I N ++ K + + + Sbjct: 181 ALMGDTADNIPGVPGVGSKTALAMLQGIGSMDLIYENLDKLAPLGFRGSKTIAKKMADNE 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + ARLS KL ++ DV + + + + LI LEF + ++ V Sbjct: 241 DMARLSYKLATIKLDVELEVAYDDFKTIKQDTDSLIKLFGKLEFRRWLSAV--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +D + ++ +S++ S ++E L LE Sbjct: 292 ----------------------LDGEQILQGGASTSMTSTPSTSDTE-----LSLE---- 320 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + + PI +D I ++Q +QKLE S I T D +K + + + L Sbjct: 321 IKKTPIRHDQC--IYTQGQLKQLIQKLEKAELFSISIETTCADYMQAKIVGFSFA-LQVA 377 Query: 418 DDTS--FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 D+ S +E ++ L+ H D+ + L LK E K+ N+K+ + V Sbjct: 378 DENSAEITIEAFYLPLA-HDYIDAPAQLEYLA-TLDKLKPLLEKIAPQKVVFNLKFMRSV 435 Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531 L GI+++G D ML SY+LDS HD AS+ K+L + + I K +P + Sbjct: 436 LRLEGINLQGVAFDPMLESYLLDS-TGKHDKASLTLKYLQIEIASYEAIAGKGKKQLPFN 494 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++S + + E+ + L+L LLL PKL KL+ +YE ++ P+ V+S +E+ G++I Sbjct: 495 QVSIKDITPYVGEHVELSLRLHLLLWPKLEKFPKLVALYEDIELPLAIVLSDVELGGVEI 554 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D +L S EI K LL +E+ Y +G++FNLSSPKQL ILF L+ P KT G Sbjct: 555 DATMLGAQSVEIGKRLLEIEKEAYIEAGKEFNLSSPKQLQSILFEDLELPILKKTPKGAP 614 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L ++ + K ++E R LSK+KSTY D LP IN +T RVHT Y A T+T Sbjct: 615 STGEEVLVEL-AETYKLPKLVIEHRGLSKLKSTYTDKLPKMINAQTGRVHTSYHQAVTVT 673 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIPI+++ G++IR+AFI+P K+++ADYSQIELRI+AH+++ L + Sbjct: 674 GRLSSSDPNLQNIPIRSEQGRRIRQAFIAPQGYKIVAADYSQIELRIMAHLSQDKGLLEA 733 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F LDIH+ A+E+F V++++V+ RR AK INF +IYG+S F LA QL+I RS+A Sbjct: 734 FSTGLDIHKATASEVFSVSVDEVTTNQRRSAKAINFGLIYGMSAFGLAKQLKISRSDAKL 793 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 Y+ +YFHR+PG+ Y++ T++ R+ G+VETI GRR+ INS ++ +ERAAINA Sbjct: 794 YMDKYFHRYPGVLTYMQTTRDKAREQGFVETILGRRLQLPHINSRNGILKKASERAAINA 853 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLA-TKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 P+QG+AADI ++AM+ V +E + ++L+Q+HDELVF + E+++ + II M Sbjct: 854 PMQGTAADIIKKAMLDVAAWVEKQAPSQVQLLMQVHDELVFCIKEDQVENYTCIIQEIMA 913 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 KA + L VPL + V NNW E Sbjct: 914 KAVI----LDVPLLAEVGVGNNWDE 934 >gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491] gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491] Length = 938 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 357/993 (35%), Positives = 534/993 (53%), Gaps = 76/993 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L+ ++ +AS IK K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLQAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D I L+ C Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG-----IESLR----------------CTT 265 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E + E+ Sbjct: 266 PKWAQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK EN KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQISF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ K L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMDA-KQLEMYEKMELPVAQVLFEMERNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG+ E VS + RR+AKTINF +IYG+ + LA L I A Sbjct: 726 AAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK G+VET+FGRR++ +I + ++ R ERAAI Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNTNARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTAS 941 NAP+QG+A+D+ +RAMI V + L D L +K+++Q+HDELV EV E E+ Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVK 905 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M K + L VPL + V NW+E Sbjct: 906 EKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 936 >gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H] gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H] Length = 936 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 343/979 (35%), Positives = 546/979 (55%), Gaps = 72/979 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L LVDGSS+++RA++ L + DG P AI G NM L +K+ + IF Sbjct: 17 LILVDGSSYLFRAYHVPYLQALSTADGQPTGAITGVLNMFRSL----KKDYPNGNIIAIF 72 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRN+++P+YKANRP +P+ L Q+ + A G+P + I G EADD+I T Sbjct: 73 DAKGKTFRNDMFPEYKANRPPMPDDLRTQIAPIHEIITAMGLPLLVIPGVEADDVIGTLA 132 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A++ G I + DKD+ QLV+ L +T+ + ++D+ V +K+G+ P++++ AL Sbjct: 133 KQADELGIETVISTGDKDMAQLVTKHVRLINTMTDVEMDVAGVSEKFGVRPDQIIDYLAL 192 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GD +DNIPG+ G KTA L E+G ++ ++ NA ++K K EN+ + E LS + Sbjct: 193 MGDKVDNIPGVVKCGPKTAVKWLAEHGTMQEVIANADKVK-GKIGENLRDALEQLPLSYQ 251 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 L ++ DV + L + + L + E +L+ A++ D Sbjct: 252 LATIKCDVELEQTAGELAASEPDVDALAELYQKFELKRLL-----------ADLGKGGSD 300 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 + + +A +T+ D +S+ +Q +I + + +E+ Q Sbjct: 301 VGAS-TSSVAKKTKADST--------ASVGEQAVEIKA------VDVEKTQ--------- 336 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 Y I++ + +QW++KL+ S +F T+T + K + +S F +E Sbjct: 337 --YDIILDKELFEQWLKKLQACESFAFD--TETTSVHYMKAELVGVS---------FAIE 383 Query: 426 ---TIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 ++ L+ H +D+ L KE +L+ LK E++ KIG N+KYD VL Y I Sbjct: 384 VGKAAYVPLT-HDYEDA--PEQLDKEWVLAQLKPLLESKTIKKIGQNLKYDANVLSHYDI 440 Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537 +++G E D M+ SY +S + H++ ++A K+L Y +++ + ++I + Sbjct: 441 ALQGIEFDTMIESYCYNSVATRHNMDALALKYLDYQTVHFEDVAGKGAKQLTFNQIDIEK 500 Query: 538 VQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +A E++++ L+L + P L +L V+ ++ P++ V+++ME TG+ ID D+L Sbjct: 501 AGHYAAEDADITLRLHHAIFPALAETASMLSVFNEIEMPLLPVLARMEQTGVLIDSDILA 560 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 + S + + L LE ++L+G+ FNL+SPKQL ILF LK P KT G T + Sbjct: 561 EQSFTLGQRLDELEIEAHNLAGKSFNLASPKQLQQILFEDLKIPVIKKTPKGAPSTAEEV 620 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 L+++ D P+ K ILE R LSK+KSTY D LP ++ +T R+HT Y A T TGRL+S Sbjct: 621 LQELAL-DYPLPKVILENRGLSKLKSTYTDKLPLMVSDKTNRLHTSYHQAVTATGRLSST 679 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIPI+++ G+KIR+AFI+P K+++ DYSQIELRI+AH++ L F D Sbjct: 680 DPNLQNIPIRSEQGRKIRQAFIAPKDHKIVAIDYSQIELRIMAHLSNDKGLVTAFSEGKD 739 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IHR AAEIF V + +V+ RR AK INF +IYG+S F LA QL I R +A +Y +YF Sbjct: 740 IHRATAAEIFAVELGEVTTDQRRSAKAINFGLIYGMSAFGLAKQLHIGRQQAQEYQDKYF 799 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+PG+ Y+E T+ + GYVET++GRR++ +IN+ + ERAAINAP+QG+A Sbjct: 800 QRYPGVLTYMEDTRQQASEQGYVETLYGRRLYLPDINAKNGMRKKAAERAAINAPMQGTA 859 Query: 897 ADITRRAMISVHK-SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 ADI ++AM++V LE + KM +Q+HDEL+FE+ ++ + + +V M A Sbjct: 860 ADIIKKAMLAVDSWLLEQNDDRIKMTMQVHDELIFEIHQDIVEETTAKLVTLMNDA---- 915 Query: 956 INLRVPLKVNIKVSNNWQE 974 + L VPL + +NW E Sbjct: 916 VELSVPLIAEAGIGDNWDE 934 >gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] Length = 927 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 341/986 (34%), Positives = 540/986 (54%), Gaps = 78/986 (7%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYR++YA P ++ K GL +A+ GFCN L ++L R SH Sbjct: 2 DKLFLIDAYALIYRSYYAFINNPRINSK--GLNTSAVMGFCNTLNEVLTKER----PSHI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD+ +TFRNE +P YKA R + PE + +P+++ A+ IP +++ GFEADD+I Sbjct: 56 GVAFDH-GLTFRNEAFPQYKAQREETPEDIKRSVPIIKDILTAYHIPVLQVDGFEADDVI 114 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGIP-PE 177 T A ++G +++ DKD QLV +Y E + + V +K+ I P Sbjct: 115 GTLALKAGQQGVDTYMLTPDKDYAQLVRSNVYMYRPRHGGGYETMGPDEVNQKYNISSPL 174 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ L AL GDS DN PG PG+G KTA+ L+ E+G +E +L N +++K K RE + Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTASKLINEFGTVEQLLENTAQLK-GKMREKVEAAV 233 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E ++S+ L +RTDVP+ + LE L L++ + +L LEF R+ Sbjct: 234 EDIKMSKFLATIRTDVPVELDLEQLQLKEPDAAKLQEIFTELEFKSFATRL--------- 284 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT---PQKLFLER 354 +N E + ++ Q S L D+ + ++ + PQ Sbjct: 285 --------LNKAE-----------KPKKVENRQLS-LFDEPAMAEADNSLFEPQSAASAN 324 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 Q + P Y + D+Q V L T S T + +A ++ + ++ + Sbjct: 325 RQTIETTP---HEYHLVQTEADMQALVTLLSTADVISLDTETTSTNAIEAQLVGLSFAIE 381 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 ++K ++ + + + I++ K +EN LK+G NIKYD Sbjct: 382 EKK--------AYYVPVPEQADE--------AQNIVNRFKAIYENPKTLKVGQNIKYDLE 425 Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIP 529 VL YGI+++G D M+ Y+L H++ +A+ +L+Y I K+ Sbjct: 426 VLRNYGIALQGPLFDTMVAHYLLQP-ELRHNMDFMAEVYLNYETVHIDALIGPKGKAQKN 484 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 + +++ S+V +A E++++ LQL +L+PKL+ + ++ ++ P+I V+++ME G++ Sbjct: 485 MRELAPSEVYNYACEDADITLQLKNVLQPKLVEAGVERLFNEVEMPLIPVLAEMECNGVR 544 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648 ID LK+ S ++ +L LE+ IY +G+ FN++SPKQ+GDILF ++K KTKTG Sbjct: 545 IDTAALKETSQVFTERMLQLEQEIYQAAGKTFNVASPKQVGDILFGEMKIIDKPKKTKTG 604 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q+ T+ + L+ + +PI+ +IL++R L K+ TY D+LP IN RT +HT ++ A T Sbjct: 605 QYVTSEEVLQTLRS-KHPIVAHILDYRALKKLLGTYVDALPKLINPRTGHIHTSFNQAVT 663 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++ + G++IR+ FI + SADYSQIELR++AH+++ + Sbjct: 664 ATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANML 723 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIH AA+I+ + +V+ R AK NF IIYGI+ F LA +L I R+EA Sbjct: 724 DAFREGYDIHAATAAKIYNKPVSEVTRDERTKAKRANFGIIYGITVFGLADRLNIERAEA 783 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 I YF FP + +Y+E+ K R NGYVET F RR + +INS +++R I ER AI Sbjct: 784 KQLIDGYFKMFPQVQQYMEQAKETARANGYVETFFHRRRYLPDINSGNATVRAIAERNAI 843 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQGSAADI + AM+ + + + + +KM+LQ+HDEL F V E +I++ M Sbjct: 844 NAPIQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNFSVLPTEKEQVERIVMEEM 903 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 + A L L VPL + NNW E Sbjct: 904 QAAYL----LDVPLVADSGWGNNWLE 925 >gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132] gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132] Length = 933 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 351/982 (35%), Positives = 536/982 (54%), Gaps = 70/982 (7%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYRA +A P ++ K GL I GF N L ++++ + +H V Sbjct: 6 LFLLDAYALIYRAHFAFAKNPRITSK--GLNTGPIFGFTNTLLEVIKKEK----PTHLVV 59 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+ + DYKANR + PE + +P ++ QA IP +E G+EADD+I T Sbjct: 60 CFDTKTPTFRHTEFVDYKANREEQPEDITLAVPYIKRLIQAMNIPCLEKDGYEADDVIGT 119 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIPP-EK 178 A K+ F V + + DKD QLV LY E + + V+ +WGI ++ Sbjct: 120 LAKKASKDEFEVFMYTPDKDYGQLVDEHIFLYKPAFLGNGVEVMGVPEVLDRWGIKRIDQ 179 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 +V + L GD +DNIPGIPG+G KTA LL++Y LE IL NA +I K E + E Sbjct: 180 VVDVLGLMGDKVDNIPGIPGVGEKTAVKLLEQYDTLEGILENADKI-SGKLGEKVRAGKE 238 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 +A +S+ L + T+VPI E +L + GP L LEF L +R+ Sbjct: 239 SALMSKWLAKIDTEVPIEFEEERFLLNEEYGPELAELFDELEFRTLKSRI---------- 288 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 T G ETE + +++Q + D + PQ L + + Sbjct: 289 -------FKPTTETGTPNETEKPKPKAPESNQMNLFGD----LEEVSEPQDTTLHTAKDV 337 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 Y I ++ + ++ L F T +DA ++ + ++ + + Sbjct: 338 LH------DYYLISTPEERAELLEYLLAQEEICFDTETTDIDALDAQIVGLSFAYRPR-- 389 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 E +I S + K +L K FENE+ K+ NIKYD +L Sbjct: 390 ------EAFYIPFSPKFEE--------AKAVLIEFKPLFENENIRKVAQNIKYDLTILAT 435 Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 YG+ ++G D ML Y+L+ + H + +A+ +LSY +++ K + + + Sbjct: 436 YGVEVKGEIYDTMLAHYILEPDQR-HGMDYLAETYLSYKPIPISDLIGKGKKQLNMRDVP 494 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 Q++E+A E++++ LQL +L ++ + + ++ P++ V+S ME TG++ID + Sbjct: 495 LEQIKEYAAEDADITLQLKHVLDAQIKKTDQGRLLQEVELPLVHVLSDMERTGVKIDVEA 554 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTT 653 L +S + K+L +E+I+ L+G +FN+ SPKQLG+ILF +K K T TGQ+ T Sbjct: 555 LHDLSNTLQKDLAKTQEDIFQLAGMEFNVGSPKQLGEILFEHMKIDEKPKKTPTGQY-AT 613 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 +D+ D+ I++ IL++R+LSK+KSTY D+LP I+KRT R+HT Y+ A TGRL Sbjct: 614 GEDILVNYEADHEIVRKILDFRELSKLKSTYVDALPTLISKRTGRIHTTYNQAVAATGRL 673 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFE 772 +S PNLQNIPI+T+ G++IR+AFI + ++SADYSQIELRI+A + + + F+ Sbjct: 674 SSTNPNLQNIPIRTERGREIRKAFIPGGEEFTILSADYSQIELRIMADFSGDESMLEAFD 733 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 N +DIH A+++FGV++E+V+ MRR AK +NF IIYGIS F LA +L IPR EA + I Sbjct: 734 NGMDIHAATASKVFGVSLEEVNSDMRRKAKMVNFGIIYGISAFGLAQRLGIPRGEAKNII 793 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF +FP + Y+++T R+ YVETI GRR + +INS + R ER AINAPI Sbjct: 794 DAYFTQFPKVKSYMDQTIEKARELEYVETILGRRRYLRDINSRNQTNRGFAERNAINAPI 853 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAAD+ + AMI +H ++ L +KM+LQ+HDELVF+ E+ + I + M A Sbjct: 854 QGSAADMIKVAMIQIHDFMKKENLKSKMILQVHDELVFDAHHSEVEFLKEKIDYYMVNA- 912 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 LP L+V ++ I + NW E Sbjct: 913 LP---LKVKIETGIGIGKNWLE 931 >gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594] Length = 938 Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust. Identities = 357/993 (35%), Positives = 536/993 (53%), Gaps = 76/993 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L+ ++ +AS IK K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLQAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R A + Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTAPKW---- 268 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E + E+ Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK EN KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ EK L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG+ E VS + RR+AKTINF +IYG+ + LA L I A Sbjct: 726 AAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK G+VET+FGRR++ +I + ++ R ERAAI Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNTNARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTAS 941 NAP+QG+A+D+ +RAMI V + L D L +K+++Q+HDELV EV E E+ Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVK 905 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M K + L VPL + V NW+E Sbjct: 906 EKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 936 >gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis NE061598] Length = 897 Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust. Identities = 356/976 (36%), Positives = 539/976 (55%), Gaps = 92/976 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RA++A P L+ G P AI G NML KL E + AV+FD Sbjct: 4 IVLVDGSSYLFRAYHALPHLTNSQ-GEPTGAIIGVINMLKKLPIMYDTE----YVAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+++YP YKA+R I + L Q+ + + G I G EADD+I T Sbjct: 59 AKGKNFRHQLYPQYKAHRKDIDDELRVQIQPLHQIIEKMGFAVIIEDGVEADDVIGTLAQ 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +K+ + + I + DKD+ QLV+ LYD++K D+ V++K+ I P +M+ AL Sbjct: 119 KLQKQDYQIIISTGDKDMAQLVTDNIVLYDSMKNVTTDVAGVLEKYQISPHQMIDYLALM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPGIP +G KTA LQ+Y N++ I+ N +IK K EN+ + +LS +L Sbjct: 179 GDSSDNIPGIPKVGPKTAVKWLQDYQNIDGIIANQQQIK-GKVGENLRNNIDLLKLSYQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 ++ D+ + L +ED C AA+ ++ Sbjct: 238 ATIKCDLEL-----DLTVEDLK-------------------------CKAADKAYLIEAY 267 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 E K + ++ + D I TSQ Q + + E Sbjct: 268 TRYEFKSL-LKDLYNSDIKIVTSQA-----QAADVAIE---------------------- 299 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I + + +LE S +F TD+++ + + + ++ K+ +F + Sbjct: 300 -YITITTQTQLDDLIAELEKYDSFAFDTETDSLNTYEANLVGLSFCA---KEGRAFYIPL 355 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG- 485 L V Q G +L LK F + +K+ HN K+D+ VL +Y I + G Sbjct: 356 QHRYLGV-PQQLELGF------VLDKLKPLFADSKKVKVAHNFKFDEKVLSKYAIEINGK 408 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQE 540 +D M+M+YVL S HD+ S++++ L +YT I + K +D++ V + Sbjct: 409 VDDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTA--IAGTGKQQQTLDQVDIEIVAK 465 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++++ +L+ + L +K+L +Y L+ P+ +++QME TG++ID L Q S Sbjct: 466 YAAEDADITFRLFNHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQS 525 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 A + ++ LE Y+L+G++FNLSSP QL +ILF KL P KT GQ T+ + L Q Sbjct: 526 ASLETSIKELESKCYNLAGQEFNLSSPVQLREILFEKLGLPPVKKTAKGQVSTSEEVLVQ 585 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + D I I+++R LSK+K+TY D LP ++ RVHT Y+ T+TGRL+S +PN Sbjct: 586 L-AEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANG-RVHTSYNQTGTVTGRLSSSDPN 643 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPIK+ G+KIR AFI+ +++ADYSQIELRI+AH++K L +VF +LDIH Sbjct: 644 LQNIPIKSPEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNLLKVFNQNLDIHS 703 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAE+ G++I++VS + RR AK INF +IYG+S F LA QL IPR+EA +YI YF+R+ Sbjct: 704 ATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYIDIYFNRY 763 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 P + EY+ K F +QNGYVETI GRR++ EINS RN ERAAINAP+QG+AADI Sbjct: 764 PSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPMQGTAADI 823 Query: 900 TRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 ++AMI+V+ + +++ KM++Q+HDELVFEV + ++ I ME A + L Sbjct: 824 IKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEIVAKIKSIMEAA----VKL 879 Query: 959 RVPLKVNIKVSNNWQE 974 VPL+VN+ +W + Sbjct: 880 NVPLEVNVDSGKSWDQ 895 >gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 939 Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust. Identities = 358/1003 (35%), Positives = 542/1003 (54%), Gaps = 95/1003 (9%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKES 56 M L LVDGSS++YRA++A + R++ DG P A+ G NML +L R E Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHA---MLRQNLTAPDGAPTGALYGVLNMLRRL----RSEY 53 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEI 112 + AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I Sbjct: 54 PHDYCAVVFDAKGKNFRHQMFSEYKATRPPMPDDLRPQAEALPELVRLT----GWPVLVI 109 Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172 EADD+I T G V + + DKD+ QLV+ L +T+ E +DIE V +K+ Sbjct: 110 GQVEADDVIGTLAKQGVGHGLQVIVSTGDKDMAQLVNERVTLVNTMSGETLDIEGVKEKF 169 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 G+ P+++ ALTGD +DN+PG+ G KTA L+ YG+L+ ++ +AS IK K EN Sbjct: 170 GVRPDQIRDYLALTGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIK-GKVGEN 228 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLIN 286 + LS LV ++TDV + H L D P+ A++F + Sbjct: 229 LRAALPRLPLSYDLVTIKTDVDL-----HAELSDGLESLRRTTPKWAQL--AVDFKRWGF 281 Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346 R T+ +A + ++ + G++ + + +++ SE+ Sbjct: 282 R---TWLKEAES------RMHEAADGGLS-----------GSDAIGGKAAPAAEMPSERL 321 Query: 347 PQKLFL-ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405 P+K E+L Y + + KL T ++DA ++ Sbjct: 322 PEKAVAPEKL-----------DYQAVTTEAQFAALLDKLSQAEKIGIDTETTSLDAMNAS 370 Query: 406 PIAIAISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464 + I+I+ F+ E ++I V S + + + +L LK EN K Sbjct: 371 LVGISIA---------FQAGEAVYI--PVGHSLTAAPEQLDLQYVLDRLKPHLENPALKK 419 Query: 465 IGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEI 520 IG N+KYD+ V YGI++ G D ML SY+++S H + ++ +WL T + + Sbjct: 420 IGQNLKYDQHVFANYGIALNGIVGDAMLASYIIES-HLGHGLDELSGRWLGLETITYESL 478 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 I ++ E+A ++++ L+L LR ++ +K L +YE+++ P+ V+ Sbjct: 479 CGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHLRAQMD-DKQLEMYEKMELPVAQVL 537 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 +ME G+QID+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P Sbjct: 538 FEMERVGVQIDRAELARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIP 597 Query: 641 SGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 + KT G T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ R +R Sbjct: 598 TKGLKKTAKGGISTNEDVLEQL-APDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKR 656 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT Y+ A +TGRLA PNLQNIPI+T+ G+K+RRAF +PP ++SADYSQIELRI+ Sbjct: 657 VHTTYAQAVAITGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIM 716 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH++ L F+N D+HR AAE+FG+ E VSP+ RR+AKTINF +IYG+ + LA Sbjct: 717 AHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLA 776 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 L I A ++I RYF R+PG+ EY+++ + GYVET+FGRR++ +I ++ Sbjct: 777 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLPDIRHTNAN 836 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFE 931 IR ERAAINAP+QG+A+D+ +RAMI V + L D L +K+++Q+HDELV E Sbjct: 837 IRARAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDDLLQSKLIMQVHDELVLE 896 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 VPE E+ + + M A + L VPL + NW+E Sbjct: 897 VPEAELDLVKEKLPQMM--AAVDDGMLDVPLVAEVGAGMNWEE 937 >gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237] gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237] Length = 945 Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust. Identities = 340/995 (34%), Positives = 551/995 (55%), Gaps = 73/995 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M ++ LFL+D + I+R +YA P ++ K G+ +AI GF N L +++ + + Sbjct: 1 MAEQKRLFLLDAYALIFRGYYALIKNPRINSK--GMDTSAIMGFMNSLLDVIRREKPD-- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 H AV FD R E++P+YKANR P+ + +P ++ +A IP + ++G+EA Sbjct: 57 --HLAVCFDKGGSAERTELFPEYKANRDATPDAIRIAVPYIQDILKAMHIPVVVLEGWEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175 DDII T AEKE + V +++ DKD QLVS +Y + + + I+ WGIP Sbjct: 115 DDIIGTLAKQAEKEDYKVFMVTPDKDFGQLVSENIFMYKPAR-----MGNGIEIWGIPEI 169 Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 PE+++ + GD+ DNIPG+PG+G KTA ++E+G++EN+L N ++K Sbjct: 170 QKRFGVERPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIEEFGSMENLLANTDKLK-G 228 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 K +E + + A LS+KL + D +T L + ++ + LEF +L ++ Sbjct: 229 KMKEKVRDNAALGLLSKKLATICIDCDVTFNANDYELTMPDAEKVQVLFEELEFRRLKDQ 288 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347 + + + T+ K A E + + ++ S+ S+ +S +T Sbjct: 289 FLKLFSTEDDTT--ATDTSSNTKTKPQAKEAGVGQ-FSLFGGDPSTASETVMDFSSRKT- 344 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 ++ +S Y + ++ ++Q L S F T ++ ++ + Sbjct: 345 -------IKDISHV------YQSVAPGMAMKLFLQNLLKQTSVCFDTETTGLNPLTAELV 391 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 IA S K +I ++ +EI+ L+ FFE+E KIG Sbjct: 392 GIAFSWEASK--------GFYIPFPADKTE--------AQEIIEQLRPFFEDEAIEKIGQ 435 Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----K 522 N+KYD VL +Y + ++G D ML Y+++ H++ +A+ +L+YT I K Sbjct: 436 NLKYDIKVLDKYNVKVKGKCFDTMLAHYLINPDMR-HNMEVLAETYLNYTPVSITELIGK 494 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K+ + + + E+A E++++ QL +P+L K ++ ++ P++ V++ Sbjct: 495 KGKNQLNMRDVPLPNQTEYAAEDADITYQLAQQFKPELEEAKTQELFTDIEIPLLHVLAD 554 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641 ME+ GI +D L ++ ++ ++ LE +IY+ +GE+FN++SPKQLGDILF KL Sbjct: 555 MELEGINLDTKFLNSLAEDLDNDIKKLEADIYEEAGEEFNIASPKQLGDILFDKLALVKK 614 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTGQ+ +TA+D+ D+ II+N+L +R L+K+KSTY D+LP + + T RVHT Sbjct: 615 PKKTKTGQY-STAEDVLSYLAKDHKIIENVLSYRGLAKLKSTYVDALPAQVEESTGRVHT 673 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILA 759 Y TGRL+S PNLQNIPI+T+ G+++R+AF+ P K+ L++ADYSQIELRI+A Sbjct: 674 DYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFV-PRNKEYVLVAADYSQIELRIIA 732 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 +++ T + + F+N DIH A+++F V +E+V+ + R +AKT+NF IIYG+S F L+ Sbjct: 733 ALSEETTMIEAFKNGEDIHASTASKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSN 792 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 Q + R+EA + I Y+ +P + Y+ +F R NGYV+T+ GRR + +IN + + Sbjct: 793 QTDLSRAEAKELIDTYYKTYPKLKSYMGGLVDFARDNGYVQTVLGRRRYLKDINGSNAIV 852 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER A+NAPIQGSAADI + AMI++HK LE+ K TKMLLQ+HDELVF+V + E+ Sbjct: 853 RGAAERNAVNAPIQGSAADIIKIAMINIHKKLEEGKYKTKMLLQVHDELVFDVYKPELEE 912 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I ME A L VPL V + V NW E Sbjct: 913 MKTLIKSEMENA----YKLEVPLDVEVGVGENWLE 943 >gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2] gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2] Length = 931 Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust. Identities = 342/982 (34%), Positives = 535/982 (54%), Gaps = 61/982 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A P L R G P + G + ++Q RK+ A + Sbjct: 1 MSNSKTLVLVDGSSYLYRAYHAMPDL-RAIPGDPASPATGAIRGMVNMMQALRKDVQADY 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 +FD TFR+E+Y +YKA R +P+ L Q+ + Q G + + G EADD+ Sbjct: 60 AVCVFDASGPTFRDEMYTEYKATRSPMPDDLRSQIEPIHEVVQLLGWKVVAVPGVEADDV 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IAT A +G V + S DKDL QLV + DT+ +K D+ V ++G+PP M+ Sbjct: 120 IATLAQTAAAQGIQVIVSSGDKDLSQLVGEHVTIIDTMNGKKRDVAGVTAEFGVPPALMI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 QAL GD++DN+PG+ +G KTAA L+E+G+L+N++ A+ IK +N+ + + Sbjct: 180 DYQALVGDTVDNVPGVTKVGPKTAAKWLEEHGSLDNLIARAADIKGVAG-QNLRDAIASG 238 Query: 241 RL--SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 +L SR+LV ++TD C+ IS L L+ L + D+A Sbjct: 239 QLALSRQLVTMKTD--------------CDLSSYISGLPQLDAITLA-------EPDSAA 277 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 + P E G + + S Q +++ Q+ Sbjct: 278 LAPFY------EKYGFKGLVRTLGAAAAEAKAAKTDSAQGGLFDADDAAATEVAVTAQQ- 330 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 + YT I+N + +W+ K+ + TD++D ++ + I+ S Sbjct: 331 -----RDVLYTTILNEAQLDEWLAKISAAELTALDTETDSLDEMVARIVGISFSVA---- 381 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 E +I L H D + + +L+ LK + E+ K+G ++KYD+ V Sbjct: 382 ----VGEAAYIPLR-HEGMDVPEQLNMDM-VLARLKPWLEDAGKKKLGQHVKYDQHVFAN 435 Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 +GI++RG+ D ML SYVL++ R H++ S+A + +S + +++ K+ IP ++S Sbjct: 436 HGITVRGYAHDTMLQSYVLEADRP-HNLTSLALRHVSRSGISYEDLCGKGKNQIPFAQVS 494 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593 + ++ E+S+ L + L P++ LLH+YE L+ + + ++E G+ ID Sbjct: 495 VDKAAAYSCEDSDQTLDVHNTLWPRIQAHAGLLHIYE-LEMQTSEALFRIERNGVSIDAG 553 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L + S ++ +L LEE Y+++G+ FNLSSPKQLG+I F KL P KT TG T Sbjct: 554 ELARQSNDLGARILKLEEEAYEIAGQPFNLSSPKQLGEIFFDKLGMPVVKKTATGARSTD 613 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + LE++ D P+ +LE R LSK+K TY D L RVHT Y+ A +TGRL Sbjct: 614 EEVLEKL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVAVTGRL 672 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIP++T G+++R AF++P K + SADYSQIELRI+AH++ L F+N Sbjct: 673 SSNDPNLQNIPVRTPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKN 732 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 LD+HR AAE+FGV++++VS + RR+AK INF +IYG+S F LA L I AA YI Sbjct: 733 GLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYID 792 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 +YF R+PG+ Y+++T GYVET+FGRR+ EIN + ERAAINAP+Q Sbjct: 793 KYFQRYPGVKRYMDQTVELAHAQGYVETVFGRRLVLPEINGGNGPRKKAAERAAINAPMQ 852 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AAD+ ++AM++V L+ K +++Q+HDELVFE+PE A++ V + + + Sbjct: 853 GTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDELVFELPE-----AARDWVQAEIPSIM 907 Query: 954 PKI-NLRVPLKVNIKVSNNWQE 974 + +L VPL I ++W++ Sbjct: 908 AGVADLSVPLLAEIGFGSSWEK 929 >gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196] Length = 938 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 358/993 (36%), Positives = 533/993 (53%), Gaps = 76/993 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L ++ +AS IK K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIK-GKVGENLQAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R + Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E + E+ Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK EN KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPALKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++ +WL T + + I Sbjct: 429 VFANYGIALNGIAGDSMLASYIIES-HLGHGLDELSGRWLGLETITYESLCGKGAKQIGF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ EK L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T+ G+K+RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG E VS + RR+AKTINF +IYG+ + LA L I A Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAAI Sbjct: 786 KNFIDRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTAS 941 NAP+QG+A+D+ +RAMI V + L D L +K+++Q+HDELV EV E E+ Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVK 905 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M K + L VPL + V NW+E Sbjct: 906 EKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 936 >gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056] gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056] Length = 952 Score = 558 bits (1437), Expect = e-156, Method: Compositional matrix adjust. Identities = 358/1002 (35%), Positives = 556/1002 (55%), Gaps = 80/1002 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFL+D + IYRA+YA P ++ K G +AI GF N L ++L K+ Sbjct: 1 MNSTDKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E Y YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A K+G +++ DKD QLVS +Y + E + IE + K+ I Sbjct: 115 DDVIGTLATEAGKQGITTYMMTPDKDYGQLVSDNVFMYRPKHSGGFEVMGIEEIKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 E+++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 QSTEQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVAEFGSIENLLAHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E S+ L ++ DVPI + + L+ E+ N L + LEF LINRV D Sbjct: 234 EANREMITFSKFLATIKVDVPIKLDMNTLVREEPNEEELRKIFEELEFRTLINRVLKKTD 293 Query: 294 C------DAANIEPVVLDI-------NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340 ++A +P + T EN G ++ F++ + Sbjct: 294 APLPSSSNSAAPDPYAGTLFAQPTGSATPENNG-----------PVQGDLFANFAG---- 338 Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDI-QQWVQKLETIGSASFKIITDTM 399 + +K L RL+ L D ++++T++ ++ +QKL T S T Sbjct: 339 -DGTDGAKKSNLTRLEML-------DVDYQLIDTEEKRKEIIQKLLTTEILSIDTETTGT 390 Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459 + ++ + ++ S + + ++ V V ++D K I++ L+ +EN Sbjct: 391 EPMEAELVGMSFSDAENR---AYYV-------PVPANRDEALK------IVNELRPLYEN 434 Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR- 517 E+ +K+G NIKYD +VL YG+ ++G D ML YVL H++ +A+ +L Y Sbjct: 435 ENSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLQYQTI 493 Query: 518 --KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574 E++ +R K+ + + V +A E+++V L+L +L +L + H++ ++ Sbjct: 494 HIDELIGARGKNQKNMRDLPAEDVYRYACEDADVTLKLKNVLEKELKEQSAEHLFYEIEM 553 Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG-EKFNLSSPKQLGDIL 633 P++ V+ +E G++ID + L+Q S + L +E+ IY L+G E FN++SPKQ+G++L Sbjct: 554 PLVPVLVNIESNGVRIDTEALRQSSEHFTLRLQEIEKEIYALAGGETFNIASPKQVGEVL 613 Query: 634 FTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 F +LK AK TKTGQ+ T+ + LE + + II ILE+R L K+ STY D+LP I Sbjct: 614 FDRLKIVDKAKKTKTGQYVTSEEVLESLRS-KHAIIGKILEYRGLKKLLSTYIDALPQLI 672 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752 N RT R+HT ++ A T TGRL+S PNLQNIPI+ + G++IR+AFI + SADYSQ Sbjct: 673 NPRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQ 732 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELRI+AH+++ + F + DIH AA+I+ V+I V+ MRR AKT NF IIYGI Sbjct: 733 IELRIMAHLSQDKNMIDAFLSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGI 792 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S F LA ++ +PR EA + I YF +P + EY++++ R+NGYVETIF R+ +I Sbjct: 793 SVFGLAERMNVPRQEAKELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHRKRFLPDI 852 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 NS + +R ER AINAPIQGSAADI + AM + + L+ + L KM+LQ+HDEL F V Sbjct: 853 NSRNAVVRGYAERNAINAPIQGSAADIIKVAMSLICQRLQSNNLKAKMILQVHDELNFSV 912 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 PE E +I++ ME+A + VPLK + NW E Sbjct: 913 PEAEKEIIQKIVIEEMERA----YRMLVPLKADCGWGKNWLE 950 >gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] Length = 948 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 345/999 (34%), Positives = 542/999 (54%), Gaps = 78/999 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFLVD + I+R +YA P ++ K G +AI GF N L +++ R + Sbjct: 1 MSNQKRLFLVDAYALIFRGYYAFIKNPRINSK--GEDTSAIMGFMNSLLDVIKRERPD-- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 H AV FD R E+Y +YKANR + PE + +P + +A IP + +G+EA Sbjct: 57 --HLAVCFDKGGSVDRVEMYQEYKANRDETPEGIKTAVPYIYEILKAMHIPIMVKKGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175 DD+I T AEKEG+ +++ DKD QLVS +Y V + WGIP Sbjct: 115 DDVIGTLAKKAEKEGYKTFMVTPDKDFAQLVSENIFMYRPV------FGGGYETWGIPEV 168 Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 P +++ + GD+ DNIPG+PG+G KTA L YG++E +L N +K Sbjct: 169 QQKFEVTDPLQVIDYLGMMGDASDNIPGLPGVGPKTAKKFLAAYGSMEGLLANTHELK-G 227 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 K +E + E LS+KL + DVP+ + L+ + ++ + LEF +L + Sbjct: 228 KMKEKVEANGELGLLSKKLATIMLDVPVEFDAKDFELDHPDIEKVKQIFQDLEFRRLTDN 287 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347 T+ + N K +A + + QFS + SE T Sbjct: 288 FLKTFSAE------TTAPTNEIPEKKVAPKVTTKEQKSAGAGQFSLFGGDDTSNTSEAT- 340 Query: 348 QKLFLERLQKLSQYPINNDS-----YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402 S+Y N Y + + +V+ L S F T ++ Sbjct: 341 -----------SEYTRNTAETSSHFYQSVAPGMATKLFVKNLMNQTSVCFDTETTGLNPL 389 Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462 ++ + IA S K V +D KN +E++ L+ FFEN++ Sbjct: 390 TAELVGIAFSWETGKG------------FYVPFPED---KNE-AQELIEVLRPFFENDNI 433 Query: 463 LKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----R 517 KIG N+KYD VL +Y + ++G D ML Y+++ H++ +A+ +L+YT Sbjct: 434 EKIGQNLKYDIKVLAKYNVEVKGKLFDTMLAHYLINPDMR-HNMDVLAETYLNYTPISIT 492 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 + I K K+ + + ++ + E+A+E++++ LQL +L ++ ++ P++ Sbjct: 493 ELIGKKGKNQLSMREVPLDKQTEYAVEDADITLQLKEHFEKELGEANTQKLFNDIELPLL 552 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 V++ ME+ GI +D+D L +S E++ ++ +LE++IY+ +GE+FN++SPKQLG ILF K+ Sbjct: 553 RVLAAMELEGINLDKDFLNSLSEELNTDIANLEKSIYEAAGEEFNIASPKQLGVILFEKM 612 Query: 638 KF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 K KTKTGQ+ +TA+D+ D+ II+ +L++R LSK+KSTY D+LP +++ T Sbjct: 613 KLVDKPKKTKTGQY-STAEDVLSYLAKDHKIIQQVLDFRGLSKLKSTYVDALPLQVDEST 671 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIEL 755 RVHT Y TGRL+S PNLQNIPI+T+ G+++R+AF+ L++ADYSQIEL Sbjct: 672 GRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENHILLAADYSQIEL 731 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+A ++K + + F+N DIH A+++F V I +V+ + R +AKT+NF IIYG+S F Sbjct: 732 RIIAALSKEETMIEAFKNGEDIHASTASKVFNVPITEVTREQRSNAKTVNFGIIYGVSAF 791 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 L+ Q + RSEA + I+ Y+ +P + Y+ + +F R NGYV+T+ GRR + +INS Sbjct: 792 GLSNQTDLSRSEAKELIETYYATYPKLRAYMSEQVDFARDNGYVQTVLGRRRYLKDINSR 851 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + +R ER A+NAPIQGSAADI + AMI+++K L+ TKMLLQ+HDELVF+V + Sbjct: 852 NAVVRGAAERNAVNAPIQGSAADIIKIAMINIYKKLQTGAYKTKMLLQVHDELVFDVYKP 911 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+ +I ME A L VPL V++ + NW E Sbjct: 912 ELEGLKNLIKTEMENAY----ELSVPLDVDLDIGANWLE 946 >gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152] gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152] Length = 945 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 343/995 (34%), Positives = 540/995 (54%), Gaps = 73/995 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFLVD + I+R +YA P ++ K GL +AI GF N L +++ R + Sbjct: 1 MADQKRLFLVDAYALIFRGYYAFIKNPRINSK--GLDTSAIMGFMNSLLDVIKRERPD-- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 H AV FD T R E++ +YKANR PE + +P + +A IP + +GFEA Sbjct: 57 --HLAVCFDKGGSTDRVEMFQEYKANRDATPEPITQAIPYICNILEAMHIPIMVKEGFEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175 DD+I T + AEKEGF +++ DKD QLVS +Y DI WG+P Sbjct: 115 DDVIGTLSKQAEKEGFKTFMVTPDKDFAQLVSENIFMYKPRFGGGYDI------WGVPEV 168 Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 P +++ + GDS DNIPG+PG+G KTA L ++G++E +L N ++K Sbjct: 169 LEKFQVTDPLQVIDFLGMMGDSADNIPGLPGVGEKTAKKFLAQFGSMEGLLANTDQLK-G 227 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 K +E + E LS+KL + DVP++ + L+ + ++ LEF L+ Sbjct: 228 KMKEKVEANGELGLLSKKLATIMLDVPVSFNAKDFTLDQPDVEKVKEIFNELEFRNLLTN 287 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347 T+ + + + K +A E QF + S +++ Sbjct: 288 FLKTFATETTTKTAETDTKSESNTKKLATNAE---------GQFDLFAAPGSGSITQE-- 336 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 E L N Y I +T + ++KL S F T + A + I Sbjct: 337 -----ESLSGFKNINNTNHFYQHIDSTLSRKLLIKKLLQQPSVCFDTETTGLKALEVELI 391 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 IA S +++ + +S +Q+ T K IL + FFE+E K+GH Sbjct: 392 GIAFS---------YEIGKGYY-VSFPENQEET------KAILEEFRPFFESEMIEKVGH 435 Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILK 522 N+KYD VL Y + ++G D M+ Y+++ H++ +A+ +L+Y + I K Sbjct: 436 NLKYDIKVLSNYNMPVKGKLFDTMIAHYLINPDMR-HNMDVLAETYLNYHPVSITELIGK 494 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K+ + + + E+A+E++++ QL +L + ++ +++ P++ V++ Sbjct: 495 KGKNQLSMRVVPIKDQTEYAVEDADITYQLKQHFTKELDSGNVTELFNKVELPLVSVLTA 554 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641 MEI GI +D + LKQ+S ++ ++ LE+ IY+ +GE+FN++SPKQLG +LF +K Sbjct: 555 MEIEGINVDTNFLKQLSTALTDDINRLEKEIYEQAGEEFNIASPKQLGIVLFENMKLVDK 614 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTGQ+KT +D+ ++ II++I E+RQ K++STY D+LPN INK+T R+HT Sbjct: 615 PKKTKTGQYKT-GEDILSFLAKEHKIIRDIQEYRQYKKLQSTYVDALPNEINKKTGRIHT 673 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILA 759 Y A TGRL+S PNLQNIPI+T+ G+++R+AF+ P + L++ADYSQIELRI+A Sbjct: 674 QYMQAVAATGRLSSNNPNLQNIPIRTERGREVRKAFV-PKDENYVLLAADYSQIELRIIA 732 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 +++ + F+N DIH AA++FGV+I V+ + R +AKT+NF I+YG+S F L+ Sbjct: 733 ALSEEETMINAFKNGEDIHASTAAKVFGVDINDVTREQRSNAKTVNFGIVYGVSAFGLSN 792 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 Q + R EA + I Y+ +P + Y+ +F R++GYVET+ RR + +INS + + Sbjct: 793 QTDLSRGEAKELIDTYYETYPKLKAYMSAQVDFAREHGYVETVLNRRRYLKDINSRNAMV 852 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER A+NAPIQGSAADI + AMI++H +KMLLQ+HDELVF+ ++E+ T Sbjct: 853 RSGAERNAVNAPIQGSAADIIKLAMINIHNRFIQEGFKSKMLLQVHDELVFDAHKDELET 912 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 II + ME A + VPL V + + NW E Sbjct: 913 IKPIIKNEMENA----FKMTVPLDVEMGIGQNWLE 943 >gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902] Length = 930 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 356/986 (36%), Positives = 533/986 (54%), Gaps = 70/986 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L+ ++ +AS IK K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIK-GKVGENLRAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R A + Sbjct: 232 LPRLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTAPKW---- 268 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E +K + Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDVFGSDSIGEQAALNAEMPSEK----QA 321 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +K + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 322 EKATA-PERLD-YQAVTTEAQFAALLDKLSRANTIGIDTETTSLDAMNASLVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK N KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ EK L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y + + FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG E VS + RR+AKTINF +IYG+ + LA L I A Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAAI Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI V L D + +K+++Q+HDELV EV E E+ + + M Sbjct: 846 NAPMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 K + L VPL + V NW+E Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928 >gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 879 Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust. Identities = 335/922 (36%), Positives = 520/922 (56%), Gaps = 57/922 (6%) Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H AVIFD P TFR+++ P YK +RP +PE L Q+P + +A GIP + G EAD Sbjct: 7 THMAVIFDTPEPTFRHKLSPIYKGDRPTMPEELSQQIPYLHALIKAQGIPLYSLPGAEAD 66 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 DII T A KEG V I + DKD+ QLV+ L D+ K+ +D + V +K+G+ P + Sbjct: 67 DIIGTLAKRAVKEGHHVLISTGDKDMAQLVNDYVKLEDSFKDRVLDTDGVFEKFGVWPNQ 126 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ L GD+ D I G+PG+G KTAA LL EYG L+NI+ N ++K K +NI + + Sbjct: 127 IIDYLTLMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANVDQLK-GKLSQNIKDNLD 185 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 +L +L + D+P+ + L L D N L + LEF + + + ++++ Sbjct: 186 NIKLDHQLASIVCDLPLELDWHELKLTDPNVDALRNLYTELEFRNQLQSLDHPNNPNSSS 245 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 + + ++ E+ TI+T +SL+ Q ++ + L E +L Sbjct: 246 YK--------QQASQTIVQNEVKPAQTIETEDQASLTSQDDQLGTANYHTVLTQEAWDQL 297 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 Q N D + ++T+ + E +G F I D DA++ P+A Sbjct: 298 WQRMQNADHFA--IDTETTSLDYRIAEMVG---FSIAFDAKDAYYI-PLA---------- 341 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 H +++ + L +E +L+ +K ENE KIGH++KYD + Sbjct: 342 ---------------HNYENAPQQ--LNREQVLAQIKPVLENEAVKKIGHHLKYDAHIFA 384 Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 +GI ++G + D ML SYVL++ + H + +A+ +LS+ T ++I ++I Sbjct: 385 NHGIELKGWYFDSMLASYVLNAAATRHGMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQI 444 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 +A E+++V +L+ +L KL +L ++ ++ P+ ++S ME GI++D Sbjct: 445 EIEVAAHYAAEDAHVTYRLYEVLSNKLKAHPELENILYNIEMPVARILSGMEEDGIRLDH 504 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L ++S E +K + LE +++GE FN++SPKQ+G+ILF KL G KT TGQ+ T Sbjct: 505 AFLDKLSVEFAKTMEDLENQAMEIAGETFNIASPKQVGEILFDKLGIKGGKKTATGQYST 564 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE+I ++P+ + ILE R L+K+KSTY D L + T RVHT Y A T TGR Sbjct: 565 SESVLEKI---EHPLTEIILEHRGLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGR 621 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIPI+ +G++IR+AFI+P + L++ADYSQIELR++AH ++ L F+ Sbjct: 622 LSSSDPNLQNIPIRRQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQ 681 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + D+HR AAE+ G+ IE V+ RR AK +NF ++YG+S F L QL R E+ +YI Sbjct: 682 HGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNYI 741 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 K+YF R+PGI+EY+++T+ + G+VETI GRR++ +I++ +R ERAAINAP+ Sbjct: 742 KQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAPL 801 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAADI + AMI V K L K K+LLQ+HDELVFEV S+ I M+ Sbjct: 802 QGSAADIIKLAMIEVDKILP--KDQAKLLLQVHDELVFEVDSNIADELSKQIADVMQSV- 858 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + + VPL V + NW + Sbjct: 859 ---LEISVPLVVEVGQGKNWDD 877 >gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47] gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47] Length = 891 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 358/940 (38%), Positives = 534/940 (56%), Gaps = 73/940 (7%) Query: 54 KESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQ 113 K+ + A + D TFR++IYPDYKANRP +PE L Q+PL+ Q GIP ++I Sbjct: 2 KDVPTDYVACVVDPKGKTFRSDIYPDYKANRPPMPEDLSVQIPLIFEGVQKEGIPFLQIP 61 Query: 114 GFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK--IDIEHVIKK 171 G EADD I T T A EGF V I + DKD QLV+ L +T+ ++ ++ E V KK Sbjct: 62 GIEADDTIGTLTKKAVAEGFNVVIATGDKDFAQLVNDNVLLVNTMGKDNSWLNSEGVEKK 121 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 +G+PPEK++ AL GD IDN+PG+P G KTAA + E+G+++ ++ NA ++K K E Sbjct: 122 FGVPPEKIIDFLALMGDKIDNVPGVPKCGEKTAAKWITEFGSVDGVIENAEKVKGK-IGE 180 Query: 232 NILEYAETARLSRKLVMLRTDVPIT--IP-LEHLILEDCNGPRLISFLKALEFTKLINRV 288 N+ ++R+LV ++TD ++ +P LE L L+ N L+ + LEF + Sbjct: 181 NLRSALGFLPIARQLVTIKTDADLSAEVPSLESLKLKTPNRTELLDYYNKLEFRSWAKEL 240 Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETE-IDRDTTIKTSQFSSLSDQTSKINSEQTP 347 T D ++P L+ +TT K A+ ++ DT L Q + +E+T Sbjct: 241 KKT-DV-PGEVKP--LETSTTAQKRAAVGAAPVEGDTL-------DLFSQEQESETERTL 289 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 + + T K++ ++ L T F ++ D P+ Sbjct: 290 EII------------------TDKAKAKELAAHLEDLVTKDGFEFYVLADGSSQQEYMPV 331 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 +A T D K TS+ + ID V +Q T KEI + E++ +K G+ Sbjct: 332 GVAFGTTDGK--TSY----VPIDNDVLLAQGLTLGTF--KEIFG---RVLEHKKPIKCGY 380 Query: 468 NIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS 523 + KY K V GI++ G +D+ML SYVL++ RS H I +A WL Y +E+L Sbjct: 381 DTKYMKHVFANVGINLAGVSDDVMLESYVLEAHRS-HTIEKLAANWLKYELRGEEELLGK 439 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQ 582 + ++S + E A E ++ +L L + L + KL +Y ++ P+ DV+ + Sbjct: 440 GAKKLSFSQVSVEKAAEFASERVFIVSRLNRLFKKALSDDAKLEKIYRDIEMPLSDVLFK 499 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-S 641 ME G+ ID LL Q +A+++ LEE ++++GE F LSSPKQLG+ILF K+ Sbjct: 500 MEQNGVLIDTKLLDQQTAQLNTKARELEEQAFEVAGENFKLSSPKQLGEILFDKMGVVLE 559 Query: 642 GAKTK---TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 GAK K +G + T+ + L ++ + P+ K LE+R ++K+ +TY + LP ++ + R Sbjct: 560 GAKPKKTISGNYSTSEEVLSEL-AENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGR 618 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT + A +TGRL+S PNLQNIPI+T+ G+K+R AFIS KLISADYSQIELRI+ Sbjct: 619 VHTTFEQAVAVTGRLSSTNPNLQNIPIRTEEGRKVREAFISASGCKLISADYSQIELRIM 678 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH++ L + F+N+ DIHR AAE+FG +KV+P RR AK INF ++YG+SPF LA Sbjct: 679 AHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGLMYGMSPFGLA 738 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 L I R EA +YI ++F RFPG+H+Y+E+T+ + GYVET FGRR+ EI++ + Sbjct: 739 KNLGIGRDEAKNYINKFFARFPGVHDYMERTRALADRQGYVETTFGRRLWLPEIHA-GGA 797 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 R ERAAINAP+QG+AAD+ + +MI+V K +E+ L +K++LQIHDEL+ EVPE E+ Sbjct: 798 RRAAAERAAINAPMQGTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEV- 856 Query: 939 TASQIIVHSMEKACLPKI-----NLRVPLKVNIKVSNNWQ 973 + K LPKI L VPL + V +NW+ Sbjct: 857 --------DLVKENLPKIMDSVTELHVPLIAEVGVGDNWE 888 >gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442] gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442] Length = 930 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 355/986 (36%), Positives = 533/986 (54%), Gaps = 70/986 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L+ ++ +AS IK K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENLQAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R + Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E + E+ Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 321 AEKAIAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK EN KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLENPTLKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V Y I++ G D ML SY+++S H + ++++WL T + + I Sbjct: 429 VFANYDIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ EK L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQQAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG+ E VS + RR+AKTINF +IYG+ + LA L I A Sbjct: 726 AAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAAI Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI V L D + +K+++Q+HDELV EV E E+ + + M Sbjct: 846 NAPMQGTASDLIKRAMIDVRNWLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 K + L VPL + V NW+E Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928 >gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76] gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385] Length = 983 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 357/993 (35%), Positives = 533/993 (53%), Gaps = 76/993 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 46 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 101 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 102 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 157 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 158 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 217 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L ++ +AS IK K EN+ Sbjct: 218 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIK-GKVGENLQAA 276 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R + Sbjct: 277 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 313 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E + E+ Sbjct: 314 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 365 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 366 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 421 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK N KIG N+KYD+ Sbjct: 422 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQH 473 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 474 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 532 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ EK L +YE+++ P+ V+ +ME G+QI Sbjct: 533 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 591 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 592 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 651 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 652 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 710 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T+ G+K+RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 711 ITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 770 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG E VS + RR+AKTINF +IYG+ + LA L I A Sbjct: 771 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 830 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAAI Sbjct: 831 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 890 Query: 889 NAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTAS 941 NAP+QG+A+D+ +RAMI V + L D L +K+++Q+HDELV EV E E+ Sbjct: 891 NAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVK 950 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M K + L VPL + V NW+E Sbjct: 951 EKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 981 >gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] Length = 920 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 341/981 (34%), Positives = 548/981 (55%), Gaps = 79/981 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA +P ++ K GL +A+ GFCN L ++L + +H V Sbjct: 4 LFLIDAYALIYRSYYAFIKSPRINSK--GLNTSAVMGFCNTLNEVLTKEK----PTHIGV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD+ TFR++ +P+YKA R + PE + +PL++ +A IP +++ GFEADDII T Sbjct: 58 AFDH-GKTFRHDAFPEYKAQREETPEDIKLSVPLIKQVLEAMHIPILQVDGFEADDIIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIP-PEKM 179 +G +++ DKD QL+ P +Y +I + V +K+GIP P ++ Sbjct: 117 IATRFGADGIDTFMLTPDKDYGQLIGPNVFMYRPRHGGGYEILGEKEVGEKYGIPTPAQV 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L AL GDS DN PG PG+G KTAA L+ ++G+++N+L + IK K RE + E Sbjct: 177 IDLLALMGDSADNFPGCPGVGEKTAAKLINQFGSIDNMLQHTDEIK-GKLREKVENAVED 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 ++S+ L +RTDVP+ + L+ L +E + +L + + LEF LIN+ Sbjct: 236 IKMSKFLATIRTDVPMQLDLDELKVEQPDETKLRAIFEELEFKTLINKF----------- 284 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 +N E+K +Q ++ T+ N P+ E + K + Sbjct: 285 ------LNKAESK-----------PKTDNNQLDLFAENTT--NESDEPKNAKFESI-KTT 324 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 Q+ Y + N ++++Q T S S T + DA ++ + ++ S ++K Sbjct: 325 QH-----EYKLVENEEELRQLCDFFITKESVSIDTETTSTDAISAELVGLSFSVEEKK-- 377 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 +F V +V + + K I+ K +E++ +KIG NIKYD VL RY Sbjct: 378 -AFYV-------AVPANYEEALK------IVQIFKPLYESDKIMKIGQNIKYDYEVLTRY 423 Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPIDKIS 534 G++++G D M+ Y++ H++ +A+ L Y +E+L + K + +S Sbjct: 424 GVTLQGKMFDTMIAHYLIQP-ELHHNMDYMAETLLGYQTIHIEELLGPKGKKQKNMRDLS 482 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + + E+A E++++ L+L +L P+L + ++ ++ P++ V++ ME+ G+ +D + Sbjct: 483 PTDIYEYAAEDADITLRLKNVLEPRLKELGVEELFWNIEMPLVRVLADMELNGVCLDTEA 542 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTT 653 L+ S ++ + E+ IY +GE+FN+SSPKQ+GDILF KL+ KTKTGQ+ T+ Sbjct: 543 LQDTSKIFTERMKQYEQEIYKEAGEEFNISSPKQVGDILFGKLQIMDKPKKTKTGQYVTS 602 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + L+ + +PI++NIL +R + K+ STY D+LP IN RT +HT ++ A T TGRL Sbjct: 603 EEVLQSLES-KSPIVRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQALTATGRL 661 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIP++TD G++IR+ FI SADYSQIELRI+AH+++ + + F Sbjct: 662 SSSDPNLQNIPVRTDDGKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSEDENMMEAFRE 721 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIHR AA+I+ V+I+KV+ R+ AK NF IIYGI+ + LA ++ IP EA + I+ Sbjct: 722 GHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMDIPNGEAKELIE 781 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF FP + Y+E K R GY ET+F RR + +INS +++R ER AINAPIQ Sbjct: 782 GYFRTFPKVQVYMEHAKEVARAKGYAETLFHRRRYLADINSRNATVRGFAERNAINAPIQ 841 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+ ADI + AM+ + + + + +KM+LQ+HDEL F V EE +I++ M+ A Sbjct: 842 GTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSVFPEEREQVERIVIEEMQNA-- 899 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 L VPL + NW E Sbjct: 900 --YPLNVPLIADAGWGKNWLE 918 >gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] Length = 920 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 341/988 (34%), Positives = 545/988 (55%), Gaps = 93/988 (9%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA P ++ K GL +AI GFCN L ++L + ++ V Sbjct: 4 LFLLDAYALIYRSYYAFIKNPRINSK--GLNTSAIMGFCNTLNEVLTKEK----PTYIGV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD+ +TFRNE +P YKA R + PE + +PL++ +A+ IP +++ GFEADD+I T Sbjct: 58 AFDH-GLTFRNEAFPQYKAQREETPEDIRKSVPLIKDILKAYHIPILQVDGFEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL--------YDTVKEEKIDIEHVIKKWGIP 175 A+ G +++ DKD QLVS + Y+T+ E + V++K+GI Sbjct: 117 LATQAQDAGVETFMLTPDKDYGQLVSDNVFIFRPRHGGGYETMGERE-----VMEKYGIS 171 Query: 176 PEKMVC-LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 K+V L AL GD+ DN PG PG+G KTA L+ E+G +E+++ S +K + + Sbjct: 172 SPKLVIDLLALMGDASDNFPGCPGVGEKTAVKLINEFGTVEDLMARTSELK-GALKTKVE 230 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 + + ++S+ L +RTDVPI + L+ L L + + RL LEF +R+ + Sbjct: 231 THLDDIKMSKFLATIRTDVPIDLQLDELKLVEPDHTRLTEIFTELEFKSFADRILNKSEK 290 Query: 295 DAANIEPVV--LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 N + +NTTE+ + +T D TIKT Q Sbjct: 291 KPINTNQQLDLFAVNTTEHADVTEKTNYD---TIKTVQHD-------------------- 327 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 Y I N +++Q+ T + S T ++ A ++ + ++ + Sbjct: 328 ---------------YKLIENEEEMQRVCDLFLTKQTVSIDTETTSLYAMDAELVGLSFA 372 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 ++ + ++ + + ++I++ K +E+E +K+G N+KYD Sbjct: 373 VEER--------QAFYVPVPADRKE--------AEKIVNIFKPLYESEAIMKVGQNMKYD 416 Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSS 527 VL YG+ +RG D M+ Y++ H++ +A+ +L+Y I K Sbjct: 417 LEVLRNYGVCLRGALFDTMIAHYLIQP-ELRHNMDYMAEVYLNYQTIHIDTLIGAKGKHQ 475 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 + ++S +QV E+A E++++ LQL +L PKL + ++ +++ P++ V+++ME+ G Sbjct: 476 KSMRELSPAQVYEYAAEDADITLQLKNVLEPKLREVEAEELFYQIEMPLVPVLAEMEMNG 535 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTK 646 ++ID LK+ S +++ + LE IY+L+G +FN++SPKQ+GD+LF ++K KTK Sbjct: 536 VRIDTQSLKETSDILTRRMHDLEARIYELAGGEFNIASPKQVGDMLFGRMKIIDKPKKTK 595 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 TGQ+ T+ + L+Q+ G + I+ +IL++R L K+ TY D+LP IN RT R+HT ++ Sbjct: 596 TGQYVTSEEVLQQLR-GKHEIVGDILDYRGLKKLLGTYVDALPKLINTRTGRIHTSFNQT 654 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 T TGRL+S EPNLQNIP++ + G++IR+AFI SADYSQIELR++AH++ Sbjct: 655 VTATGRLSSSEPNLQNIPVRGEDGKEIRKAFIPEEGCLFFSADYSQIELRVMAHLSGDAH 714 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 + + F DIH AA+I+G +E V+ R AK NF IIYGI+ F LA +L I R+ Sbjct: 715 MIEAFREGYDIHAATAAKIYGRAVEDVTRDERTKAKRANFGIIYGITVFGLAERLDIDRN 774 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA I YF FP + +Y+E +K R +GYVETIF RR + +INS +++R ER Sbjct: 775 EAKQLIDGYFMMFPQVKDYMEHSKEVARTHGYVETIFHRRRYLPDINSHNATVRGFAERN 834 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAPIQGSAADI + AMI +++ + +KM+LQ+HDEL F V EE +I++ Sbjct: 835 AINAPIQGSAADIIKVAMIRIYRRFMKEGIRSKMILQVHDELNFSVFPEEKERVERIVME 894 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 M++A LRVPL + NW E Sbjct: 895 EMQQA----YPLRVPLVADSGWGTNWLE 918 >gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3] gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3] Length = 907 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 355/992 (35%), Positives = 528/992 (53%), Gaps = 105/992 (10%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDGSS++YRA++A P L+ G+ A+ G NML +L +K+ S Sbjct: 1 MSDKTPLILVDGSSYLYRAYHALPPLTNSK-GVATGAVKGVINMLRRL----QKDYPDST 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+FD TFR++IY +YKANRP +P+ L Q+ + + G+P + G EADD+ Sbjct: 56 IAVVFDAKGKTFRDDIYKEYKANRPPMPDDLREQVQPIHDIVRGMGLPLLCEPGVEADDV 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T A + V + + DKD+ QLV+ L +T+ + +D + V+ K+GIPPE ++ Sbjct: 116 IGTLARQASEADCHVIVSTGDKDMAQLVNERVTLVNTMNDTVMDPQGVVDKFGIPPELII 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLL-------QEYGNLENI----LINASRIKQKKR 229 L AL GD +DNIPG+PG+G KTA LL Q Y +L+ I A + K Sbjct: 176 DLLALMGDKVDNIPGVPGVGEKTALGLLQGLGGLNQIYASLDQIEGLPFRGAKTMAAKLE 235 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKALEFTKLINR 287 +E + A LS L + TD + +PL + LE+ + L+ K LEF I+ Sbjct: 236 KER-----DNAYLSYTLATIATD--LELPLVYADLENAPPDNVALLDLFKELEFKGWID- 287 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347 E +G A+ + + + + ++ DQ S Sbjct: 288 ----------------------ELEGAALADDAPAEVDTREQHYVTVLDQNS-------- 317 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 F E L +LS P+ F T+T + + Sbjct: 318 ---FDEWLARLSAAPL----------------------------FAFDTETTSLNYMEAE 346 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 + +S ++ + ++ + + S T +L+ LK E+ K+G Sbjct: 347 IVGLSFAVERGEAAY--------VPLAHSYPGTPAQLDRDAVLAALKPLLEDPDKAKLGQ 398 Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 N+KYD VL RY I+M+G D ML SYVLDS + HD+ S+A K+L + +++ Sbjct: 399 NLKYDASVLARYDIAMQGIAFDTMLESYVLDSTGTRHDMDSLALKYLGRSTTHFEDVAGK 458 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQ 582 I DK+ + +A E++ V L L L PKL L V ++ P++ V+S+ Sbjct: 459 GAKQITFDKVGIEEAAAYAAEDAEVTLALHETLWPKLQETPSLASVLTDIELPLVPVLSR 518 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME G +D++ L + S E+ + L +LEE ++++G+ FNL SPKQLG ILF KL+ P Sbjct: 519 MERCGALLDEERLWEHSRELGQRLQALEEEAHNVAGQVFNLGSPKQLGQILFEKLELPVL 578 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KT G T + L+++ D P+ K ++E R LSK+KSTY D LP IN T R+HT Sbjct: 579 KKTPKGAPSTAEEVLQELAL-DYPLPKLLIEHRGLSKLKSTYTDKLPGMINSHTGRIHTS 637 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A T TGRL+S +PNLQNIPI+T+ G++IR+AFI+ ++++ADYSQIELRI+AH++ Sbjct: 638 YHQAVTATGRLSSSDPNLQNIPIRTEEGRRIRQAFIAAEGYQIVAADYSQIELRIMAHLS 697 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L F +LD+H AAE+FGV ++ VS + RR AK INF +IYG+S F LA QL Sbjct: 698 EDPGLLAAFRENLDVHSATAAEVFGVPLDSVSGEQRRKAKAINFGLIYGMSAFGLARQLH 757 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R EA YI YF R+PG+ +Y+ +T+ + GYVET+FGRR++ EIN + Sbjct: 758 LDRGEAQRYIDVYFERYPGVRQYMVRTRALAHEQGYVETLFGRRLYLPEINVRNKMRQQA 817 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAP+QG+AADI + AM++V + D + KM++Q+HDELV EV E ++ Sbjct: 818 AERTAINAPMQGTAADIIKMAMLAVDGWIADDGVDAKMIMQVHDELVLEVAESQLDPVCD 877 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + M A +L VPL V NW E Sbjct: 878 ELCRLMSAAA----DLAVPLLVEAGRGANWDE 905 >gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457] gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457] Length = 851 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 332/902 (36%), Positives = 507/902 (56%), Gaps = 67/902 (7%) Query: 87 IPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146 +P+ L Q+ + +A G+P + I+G EADD+I T A + G V I + DKD+ Q Sbjct: 1 MPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLARQASQAGMPVLISTGDKDMAQ 60 Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206 LV L +T+ +D E VI+K+GIPPE ++ AL GD +DNIPG+PG+G KTA Sbjct: 61 LVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYLALMGDKVDNIPGVPGVGEKTATA 120 Query: 207 LLQEYGNLENILINASRIK------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260 LLQ G LE + N +I K + + E A+LS +L ++ DV + + Sbjct: 121 LLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENRGNAKLSYQLATIKCDVELEESPQ 180 Query: 261 HLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEI 320 L+ + + L+S L F + + LD T GI + Sbjct: 181 TLLKQTPDRDALMSLYGKLAFKSWLTEL---------------LDGGT----GI-----V 216 Query: 321 DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQW 380 D KTS S++ T+ ++ P+ I+ Y I+N +D Q W Sbjct: 217 TADEQTKTS---SVTVSTAATHAAAIPES---------PAAHIDRSQYQTILNEQDFQLW 264 Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440 ++KL+ +F TD +D + + ++ + + + + V ++D +D Sbjct: 265 LEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEGEAAYLPVAHDYLDAPQQLERDW- 322 Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG 499 +++ LK E+E K+G N+KYD V+ RYG+ +RG D ML SYV +S Sbjct: 323 --------VIAQLKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSV 374 Query: 500 RSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556 HD+ S+A ++L ++ +++ K+ + ++I+ + ++A E+++V L+L + Sbjct: 375 GGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRI 434 Query: 557 RPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613 P ++E KL VY ++ P++ V+S++E TG+ ID LL S EI+ L LE+N Sbjct: 435 HP--LIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 492 Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673 Y+L+G+ FNLSSPKQL ILF ++K P KT +G T + L+++ D P+ K ++E Sbjct: 493 YELAGQPFNLSSPKQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIE 551 Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733 +R L+K+KSTY D LP IN T RVHT Y A T TGRL+S +PNLQNIP++ + G++I Sbjct: 552 YRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRI 611 Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 R+AF++P K+++ DYSQIELRI+AH++ L F + DIH AAEI GV I++V Sbjct: 612 RQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQV 671 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 S + RR AK +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++ Sbjct: 672 SSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRA 731 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE- 912 Q GYVETIFGRR+H EI S + R ERAAINAP+QG+AADI ++AM+ V + +E Sbjct: 732 AQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIER 791 Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + K+L+Q+HDELVFEV E ++ + ME A L VPL +NW Sbjct: 792 EGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNW 847 Query: 973 QE 974 ++ Sbjct: 848 EQ 849 >gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136] Length = 971 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 342/996 (34%), Positives = 546/996 (54%), Gaps = 63/996 (6%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + +YRA +A P+ + DG+ +A+ G+ N L +LQN + +H Sbjct: 9 LFLLDSMALLYRAHFALIRKPIFTS--DGVNTSALFGYANALLDILQNQKP----THLGA 62 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A T R+ ++P YKA R ++PE L +P + +A IP +E+ G+EADDII T Sbjct: 63 AFDTSAPTPRHTMFPAYKAQREEMPEDLSVAIPAAKRLLKAMRIPVLEVDGWEADDIIGT 122 Query: 124 YTYIAE-KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PE 177 + AE + GF +++ DKD QLV+ T +Y ++ E + ++ V ++WG+ P Sbjct: 123 LAHHAEARGGFETYMVTPDKDFGQLVTENTLIYKPGRQGADTEILGVKEVCERWGVSNPG 182 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ L L GD+ DNIPGI G+G KTAA L+Q++G++E +L I + K ++ + A Sbjct: 183 QVIDLLGLMGDASDNIPGIAGVGEKTAAKLIQQFGSVEAMLDRVDEI-EGKLKDKVKAGA 241 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-------AT 290 E AR+S++L + D P+T+ L+ L L + L S L EF L R+ Sbjct: 242 EMARISKQLATIMVDAPLTVQLDDLALLGFDEEALKSILVEFEFNALGRRLFGDDFKAGR 301 Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350 ++KG ++ ++ +T ++ D+ S Sbjct: 302 GRQLGGGVAPVSAPAPPAKKSKGGDLQGDL-FGAGAETIPVAAAGDEGSAEAMADAAAAP 360 Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 L L+ + P Y + + + W++KL + + F TD +D ++ + IA Sbjct: 361 HLPGLKTIRDIP---HRYELVKTADERRAWLEKLAGVDAFCFDTETDGLDPLSARMLGIA 417 Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 S + H ++ + KE+ K F KIGHN+K Sbjct: 418 FSIAPHE------------GCYFHIPEERDEHLAVLKEV----KTFLSTSKAEKIGHNLK 461 Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKS 526 +D V +GI + G F D ML+ +++ + H + +++++L Y+ I + +K Sbjct: 462 FDLRVFLAHGIEVAGPFFDTMLVHALVEPDQ-RHGMDYLSERYLGYSPVSITTLIGEKKG 520 Query: 527 SIPIDKISDSQVQ---EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 + P +++ ++ E+A E+++V LQL LRP+L L+ V+ ++ P++ V++ M Sbjct: 521 ATPQKSMAEVPLEPLAEYAAEDADVTLQLSQKLRPELERLGLMKVFYEIEAPLLPVLAHM 580 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSG 642 E G+++D L++ E+ L E I FNL+SPKQLG++LF LK Sbjct: 581 EHEGVKVDVPTLEEFGQELLSQANVLRERIQGYVDWPFNLNSPKQLGEVLFDHLKLMEKP 640 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KT TGQ++T Q L + G +PII +IL +R+ +K+KSTY D+LP +N T RVHT Sbjct: 641 KKTATGQYQTNEQTLLTLQ-GRHPIIDDILAYRECTKLKSTYVDALPAAVNPLTHRVHTT 699 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILA 759 + TGR+AS +PNLQNIPI+TD G++IR+AF+ P K+ L+SADYSQIELR++A Sbjct: 700 FHQLMAATGRMASTDPNLQNIPIRTDQGREIRKAFV--PEKEGWVLMSADYSQIELRVMA 757 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 ++ + + F+ DIH+ AA+++GV +++V P+MRR AK +NF IIYGIS F L+ Sbjct: 758 ELSADPAMMEAFQEGHDIHQATAAKVYGVALDEVLPEMRRTAKMVNFGIIYGISAFGLSQ 817 Query: 820 QL-RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 +L R+EAA I+ YF ++PG+ Y+E R GYVET+ GRR + +INS + Sbjct: 818 RLGNTSRTEAAQIIENYFKQYPGVKRYMEDIVTQARTQGYVETLTGRRRYLRDINSSNMT 877 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 +R+ ER A+NAPIQG+AAD+ + AM++V +SL + T+MLLQ+HDEL+FEVP EE+ Sbjct: 878 VRSATERVAMNAPIQGTAADMIKLAMVNVARSLREGGFKTRMLLQVHDELLFEVPLEEVD 937 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I M +A LP L+VP+ V W E Sbjct: 938 KVKPVIEQGMREA-LP---LKVPVLVEAGTGKTWLE 969 >gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58] gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58] Length = 938 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 356/993 (35%), Positives = 533/993 (53%), Gaps = 76/993 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L ++ +AS IK K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIK-GKVGENLQAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R + Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E + E+ Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK N KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ EK L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T+ G+K+RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG E VS + RR+AK+INF +IYG+ + LA L I A Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKSINFGLIYGMGQYGLAKSLGIDNLSA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAAI Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFEVPEEEITTAS 941 NAP+QG+A+D+ +RAMI V + L D L +K+++Q+HDELV EV E E+ Sbjct: 846 NAPMQGTASDLIKRAMIDVSRWLSECEASPWDELLQSKLIMQVHDELVLEVVETELDFVK 905 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M K + L VPL + V NW+E Sbjct: 906 EKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 936 >gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] Length = 927 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 341/984 (34%), Positives = 541/984 (54%), Gaps = 74/984 (7%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYR++YA P ++ K GL +A+ GFCN L ++L + SH Sbjct: 2 DKLFLIDAYALIYRSYYAFINNPRINSK--GLNTSAVMGFCNTLNEVLNKEQ----PSHI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD+ +TFRNE +P YKA R PE + +P+++ A+ IP +++ GFEADD+I Sbjct: 56 GVAFDH-GLTFRNEAFPQYKAQREATPEDIKRSVPIIKDILTAYHIPVLQVDGFEADDVI 114 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGIP-PE 177 T A ++G +++ DKD QLV P +Y E + + V +K+ I P Sbjct: 115 GTLALKAGEQGIDTYMLTPDKDYAQLVRPNVYMYRPRHGGGYETMGPDEVNQKYNISSPL 174 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ L AL GDS DN PG PG+G KTA+ L+ E+G +E +L N +++K K RE + Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTASKLINEFGTVEKLLENTAQLK-GKMREKVEGAV 233 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E ++S+ L +RTDVP+ + LE L L++ + +L LEF NR+ + Sbjct: 234 EDIKMSKFLATIRTDVPLELDLEQLRLKEPDTAKLQEIFTELEFKSFANRLLNKAE---- 289 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS-EQTPQKLFLERLQ 356 +P +N+ +++ E S+F LS + + E TP + Sbjct: 290 --KP-----KKADNRQLSLFDEPAM-AEADNSRFEPLSAPVANRQTIETTPHE------- 334 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 Y + DIQ V L S T + +A ++ + ++ + ++ Sbjct: 335 -----------YHLVQTEADIQALVNLLSAADVISLDTETTSTNAIDAQLVGLSFAVEEK 383 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 K ++ + ++ + I+ K +EN + LK+G NIKYD VL Sbjct: 384 K--------AYYVPVPEQANE--------AQNIVDKFKAIYENPNTLKVGQNIKYDLEVL 427 Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPID 531 YGI ++G D M+ Y+L H++ +A+ +L+Y I K+ + Sbjct: 428 RNYGIMLQGPLFDTMIAHYLLQP-ELRHNMDFMAEVYLNYETVHIDALIGAKGKTQKNMR 486 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 +++ S+V +A E++++ LQL +L+PKL+ + ++ ++ P+I V+++ME G++ID Sbjct: 487 ELAPSEVYAYACEDADITLQLKNVLQPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRID 546 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQW 650 LK+ S ++ +L LE+ IY +G+ FN++SPKQ+GDILF ++K KTKTGQ+ Sbjct: 547 TAALKETSQVFTERMLQLEQEIYQAAGKTFNVASPKQVGDILFGEMKIIDKPKKTKTGQY 606 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T+ + L+ + +PI+ +IL++R L K+ TY D+LP IN RT +HT ++ A T T Sbjct: 607 VTSEEVLQTLRS-KHPIVAHILDYRALKKLLGTYVDALPKLINPRTGHIHTSFNQAVTAT 665 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP++ + G++IR+ FI + SADYSQIELR++AH+++ + Sbjct: 666 GRLSSSDPNLQNIPVRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLDA 725 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F DIH AA+I+ + +V+ R AK NF IIYGI+ F LA +L I R+EA Sbjct: 726 FREGYDIHSATAAKIYDKPVSEVTRDERTKAKRANFGIIYGITVFGLADRLNIERAEAKQ 785 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 I YF FP + +Y+E+ K + NGYVET F RR + +INS +++R I ER AINA Sbjct: 786 LIDGYFKMFPQVRDYMEQAKETAKANGYVETFFHRRRYLPDINSSNATVRGIAERNAINA 845 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI + AM+ + + + + +KM+LQ+HDEL F V E +I++ M+ Sbjct: 846 PIQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNFSVLPTEKELVERIVMEEMQ- 904 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A P L VPL + NNW E Sbjct: 905 AAYP---LDVPLVADGGWGNNWLE 925 >gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190] Length = 975 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 356/986 (36%), Positives = 533/986 (54%), Gaps = 70/986 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 46 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 101 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 102 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 157 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 158 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSGETLDIEGVKAKFGVRP 217 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L+ ++ +AS IK K EN+ Sbjct: 218 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVMEHASEIK-GKVGENLRAA 276 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R A + Sbjct: 277 LPRLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTAPKW---- 313 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E +K + Sbjct: 314 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDVFGSDSIGEQAALNAEMPSEK----QA 366 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +K + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 367 EKATA-PERLD-YQAVTTEAQFAALLDKLSRANTIGIDTETTSLDAMNASLVGISIA--- 421 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK N KIG N+KYD+ Sbjct: 422 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQH 473 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 474 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 532 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ EK L +YE+++ P+ V+ +ME G+QI Sbjct: 533 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 591 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y + + FNL+SPKQL +ILF K+ P+ KT G Sbjct: 592 DRAELARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 651 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 652 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 710 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 711 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 770 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG E VS + RR+AKTINF +IYG+ + LA L I A Sbjct: 771 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 830 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAAI Sbjct: 831 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 890 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI V L D + +K+++Q+HDELV EV E E+ + + M Sbjct: 891 NAPMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 949 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 K + L VPL + V NW+E Sbjct: 950 AK--VDGGLLDVPLVAEVGVGENWEE 973 >gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC 43183] gi|167698145|gb|EDS14724.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC 43183] Length = 952 Score = 556 bits (1432), Expect = e-156, Method: Compositional matrix adjust. Identities = 353/995 (35%), Positives = 552/995 (55%), Gaps = 66/995 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFL+D + IYRA+YA P ++ K G +AI GF N L ++L K+ Sbjct: 1 MNSTDKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E Y YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPSGPTFRHEAYKQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y + E + IE + K+ I Sbjct: 115 DDVIGTLATEAGRQGIVTYMMTPDKDYGQLVSENVFMYRPKHSGGFEVMGIEEIKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 E+++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + R+K + + + Sbjct: 175 QSTEQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVTEFGSIENLLAHTDRLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY- 292 E S+ L ++ DVPI + + L+ E+ N L + LEF LI+RV Sbjct: 234 EANREMIAFSKFLATIKVDVPIKLDMNTLVREEPNEEELRKIFEELEFRTLIDRVLKKTG 293 Query: 293 -----DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347 ++A+ +P + G T + ++ F++ +D N Sbjct: 294 SPLPSSSNSASPDPYAGTLFAQPTDG----TTSGNNAPVQGDLFANFAD-----NGTGDA 344 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDI-QQWVQKLETIGSASFKIITDTMDAFHSKP 406 + L RL+ D ++++T++ ++ +QKL T S T + ++ Sbjct: 345 KNSILTRLEMF-------DVDYQLIDTEEKRKKIIQKLLTKEILSIDTETTGTEPMEAEL 397 Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466 + ++ S D ++ + + V ++D K I++ + +ENE+ +K+G Sbjct: 398 VGMSFS--DAENQAYY--------VPVPANRDEALK------IVNEFRPLYENENSMKVG 441 Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK 522 NIKYD +VL YG+ ++G D ML YVL H++ +A+ +L Y E++ Sbjct: 442 QNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIG 500 Query: 523 SR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 ++ K+ + + V +A E+++V L+L +L +L H++ ++ P++ V+ Sbjct: 501 AKGKNQKNMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEHAAEHLFYEIEMPLVPVLV 560 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFP 640 +E G++ID + LKQ S + L +E+ IY L+G E FN+ SPKQ+G++LF +LK Sbjct: 561 NIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALAGGETFNIGSPKQVGEVLFDRLKIV 620 Query: 641 SGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 AK TKTGQ+ T+ + LE + + II ILE+R L K+ STY D+LP IN RT R+ Sbjct: 621 EKAKKTKTGQYVTSEEVLESLR-NKHAIIGKILEYRGLKKLLSTYIDALPQLINPRTGRI 679 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 HT ++ A T TGRL+S PNLQNIPI+ + G++IR+AFI + SADYSQIELRI+A Sbjct: 680 HTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMA 739 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+++ + F + DIH AA+I+ V+I V+ MRR AKT NF IIYGIS F LA Sbjct: 740 HLSQDKNMIDAFLSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGISVFGLAE 799 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 ++ +PR EA + I YF +P + EY++++ R+NGYVETIF R+ +INS + + Sbjct: 800 RMNVPRQEAKELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHRKRFLPDINSRNAVV 859 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AINAPIQGSAADI + AM +++ L+ + L KM+LQ+HDEL F VPE E Sbjct: 860 RGYAERNAINAPIQGSAADIIKVAMSLIYQRLQSNNLKAKMILQVHDELNFSVPEAEKEI 919 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I++ ME+A + VPLK + NW E Sbjct: 920 IQKIVIEEMERAY----RMLVPLKADFGWGKNWLE 950 >gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM 14838] gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM 14838] Length = 941 Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust. Identities = 354/992 (35%), Positives = 553/992 (55%), Gaps = 71/992 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M ++ LFL+D + IYRA+YA +P ++ K G +AI GF N L ++L K+ Sbjct: 1 MNSDDKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E Y YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPAGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + IE V K+ I Sbjct: 115 DDVIGTLATEAGQQGITTYMMTPDKDYGQLVSENVFMYRPKHTGGFEVMGIEQVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRE 231 ++++ + L GD+ DNIPG PG+G KTA L+ E+G++EN+L + ++K K + E Sbjct: 175 QSTQQVIDMLGLMGDASDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDKLKGALKTKVE 234 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-AT 290 N E S+ L ++ DVPI + ++ L+ E+ N L + LEF LI+RV Sbjct: 235 N---NREMIIFSKFLATIKIDVPIKLDMKALVREEPNEEELRKIFEELEFRTLIDRVLKK 291 Query: 291 TYDCDAANIEPVVLDINT--TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348 + ++I P + T+N G ++ + F + N + + Sbjct: 292 SSSPSPSSIAPDLFSPGPLFTQNNG-----------PVQGNLFEEFAS-----NGPEDSK 335 Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408 L RL+ + N Y I + + ++KL T S T + + ++ + Sbjct: 336 NSNLARLETI------NADYQLIDTEEKRSKIIKKLLTTKILSIDTETTSAEPMEAELVG 389 Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468 ++ S D ++ + + V ++ K I++ + +ENE +K+G N Sbjct: 390 MSFS--DTENQAYY--------VPVPAEREEALK------IVNEFRPLYENETSMKVGQN 433 Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524 IKYD LVL YG+ ++G D M+ YVL H++ +A+ +L Y E++ R Sbjct: 434 IKYDILVLQNYGMEVKGELFDTMIAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIGPR 492 Query: 525 -KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 K+ + + +V ++A E+++V L+L +L +L + + H++ ++ P++ V++ + Sbjct: 493 GKNQKNMRDLPPEEVYKYACEDADVTLKLKNVLEEELKKQGVEHLFYEIEMPLVRVLANL 552 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E G++ID + LKQ S + L +E+ IY+L+ E FN++SPKQ+G+ILF KLK A Sbjct: 553 ESNGVRIDTEALKQTSEHFTVRLQEIEKEIYELAEETFNIASPKQVGEILFDKLKITDKA 612 Query: 644 K-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 K TKTGQ+ T+ + LE + + II ILE+R L K+ TY D+LP IN RT R+HT Sbjct: 613 KKTKTGQYVTSEEVLESLR-NKHEIIGKILEYRGLKKLLGTYIDALPLLINPRTGRIHTS 671 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 ++ A T TGRL+S PNLQNIPI+ + G++IR+AFI + SADYSQIELRI+AH++ Sbjct: 672 FNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLS 731 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + + F + DIH AA+I+ V+I+ V+ MRR AKT NF IIYGIS F LA ++ Sbjct: 732 EDKNMIDAFLSGYDIHAATAAKIYKVDIKDVTSDMRRKAKTANFGIIYGISIFGLAERMN 791 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R EA + I YF +P + EY++K+ R+ GYVETIF R+ +INS +++R Sbjct: 792 VDRKEAKELIDGYFETYPQVREYMDKSIQIAREQGYVETIFHRKRFLPDINSRNATVRGY 851 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAPIQGSAADI + AM ++K + + L KM+LQ+HDEL F VPE E Q Sbjct: 852 AERNAINAPIQGSAADIIKVAMARIYKRFQSNNLKAKMILQVHDELNFSVPEAEKEFVQQ 911 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I++ ME+A + VPL+ + NW E Sbjct: 912 IVIEEMERAY----RMHVPLRADCGWGKNWLE 939 >gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136] Length = 930 Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust. Identities = 354/986 (35%), Positives = 530/986 (53%), Gaps = 70/986 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A DG P A+ G NML +L R E + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNLTAPDGAPTGALYGVLNMLRRL----RSEYPHDY 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEIQGFE 116 AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I E Sbjct: 57 CAVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLT----GWPVLVIGQVE 112 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 ADD+I T + G V + + DKD+ QLV L +T+ E +DIE V K+G+ P Sbjct: 113 ADDVIGTLAKQGAEHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEGVKAKFGVRP 172 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ AL GD +DN+PG+ G KTA L+ YG+L ++ +AS IK K EN+ Sbjct: 173 DQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIK-GKVGENLQAA 231 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 LS LV ++TDV + H L D + + R + Sbjct: 232 LPQLPLSYDLVTIKTDVDL-----HAELSDG--------------IESLRRTTPKW---- 268 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTPQKLFLERL 355 +V+D + E E + +T F S S + + +N+E + E+ Sbjct: 269 ---AQLVVDFKRWGFRTWLKEAESNMNTGSTDDLFGSDSIGEQAALNAE-----MPFEKQ 320 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + P D Y + + KL + T ++DA ++ + I+I+ Sbjct: 321 AEKATAPEKLD-YQAVTTEAQFAALLDKLSRADTIGIDTETTSLDAMNASLVGISIA--- 376 Query: 416 QKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 F+ E ++I V S + + +++L LK N KIG N+KYD+ Sbjct: 377 ------FQAGEAVYI--PVGHSLTAAPEQLDLQDVLGRLKPHLGNPALKKIGQNLKYDQH 428 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPI 530 V YGI++ G D ML SY+++S H + ++++WL T + + I Sbjct: 429 VFANYGIALNGIAGDAMLASYIIES-HLGHGLDELSERWLGLETITYESLCGKGAKQIGF 487 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ Q E+A ++++ L+L LR ++ EK L +YE+++ P+ V+ +ME G+QI Sbjct: 488 ADVAIGQATEYAAQDADFALRLEAHLRAQMD-EKQLEMYEKMELPVAQVLFEMERNGVQI 546 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTG 648 D+ L + SAE+ L+ LE+ Y + + FNL+SPKQL +ILF K+ P+ KT G Sbjct: 547 DRAELARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ + RVHT Y+ A Sbjct: 607 GISTNEAVLEQL-APDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYAQAVA 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +TGRLAS PNLQNIPI+T G+++RRAF +P ++SADYSQIELRI+AH++ L Sbjct: 666 ITGRLASNNPNLQNIPIRTAEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLI 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+N D+HR AAE+FG E VS + RR+AKTINF +IYG+ + LA L I A Sbjct: 726 AAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSA 785 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++I RYF R+PG+ EY+++TK GYVET+FGRR++ +I + ++ R ERAAI Sbjct: 786 KNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAI 845 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAP+QG+A+D+ +RAMI V L D + +K+++Q+HDELV EV E E+ + + M Sbjct: 846 NAPMQGTASDLIKRAMIDVRNCLSD-GIGSKLVMQVHDELVLEVVETELDFVKEKLPQIM 904 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 K + L VPL + V NW+E Sbjct: 905 AK--VDGGLLDVPLVAEVGVGENWEE 928 >gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108] gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108] Length = 952 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 357/992 (35%), Positives = 545/992 (54%), Gaps = 60/992 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFL+D + IYRA+YA P ++ K G +AI GF N L ++L K+ Sbjct: 1 MNSTDKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 SH V FD TFR+E Y YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PSHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A K G +++ DKD QLV+ +Y T E + +E V K+ I Sbjct: 115 DDVIGTLATEAGKRGITTYMMTPDKDYGQLVADNVFMYRPKHTGGFEVMGVEEVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRE 231 +++ + L GD+ DNIPG PG+G KTA L+ E+G++EN+L + R+K K + E Sbjct: 175 RSTAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDRLKGALKIKVE 234 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 N E S+ L ++ DVPIT+ ++ L+ E+ N L + LEF L++RV Sbjct: 235 N---NREMITFSKFLATIKVDVPITLDMKALVREEANEDELRKIFEELEFRTLLDRVLKK 291 Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTT---IKTSQFSSLSDQTSKINSEQTPQ 348 + + + A + + + D ++ + F++ +D + + + Sbjct: 292 GNSPLPSSSTPSASPDLYAGTLFAAQPKTNADEKSGPVQGNLFANFAD-----DGADSSK 346 Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408 L RL+ L + Y I K + ++QKL I S I T+T + Sbjct: 347 NSNLTRLELL------DTDYQLIDTEKKRKDFIQKL--ITSEILSIDTETTGTEPMEAEL 398 Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468 + +S D ++ + + V ++ K I++ L+ +ENE LK+G N Sbjct: 399 VGMSFSDAENQAYY--------VPVPPIREEALK------IVNELRPLYENEKSLKVGQN 444 Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524 IKYD +VL Y I ++G D ML YVL H++ +A+ +L Y E++ R Sbjct: 445 IKYDMIVLQNYEIQVKGPLFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIGPR 503 Query: 525 -KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 K+ + +S +V +A E+++V L+L +L +L + H++ ++ P++ V+ + Sbjct: 504 GKNQKNMRDLSPEEVYRYACEDADVTLKLKNILEKELKEQGGEHLFHEIEMPLVPVLVNI 563 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E G+++D + LKQ S + L +E+ IY L+ E FN++SPKQ+G+ILF KL+ A Sbjct: 564 ESNGVRLDTEALKQSSEHFTIRLQEIEKEIYALADETFNIASPKQVGEILFDKLRIVEKA 623 Query: 644 K-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 K TKTGQ+ T+ + LE + G + II ILE+R L K+ STY DSLP IN RT +HT Sbjct: 624 KKTKTGQYVTSEEVLESLR-GKHGIIGKILEYRGLKKLLSTYIDSLPQLINPRTGHIHTS 682 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 ++ A T TGRL+S PNLQNIPI+ + G++IR+AFI + SADYSQIELRI+AH++ Sbjct: 683 FNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLS 742 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + + F + DIH AA+I+ +I V+ MRR AKT NF IIYGIS F LA ++ Sbjct: 743 EDRNMIDAFRSGYDIHAATAAKIYKTDISDVTADMRRKAKTANFGIIYGISVFGLAERMN 802 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R EA + I YF +P + EY++++ R+NGYVETIF R+ +INS + +R Sbjct: 803 VSRQEAKELIDGYFETYPQVKEYMDRSIRIARENGYVETIFHRKRFLPDINSRNAVVRGY 862 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAPIQGSAADI + AM +H+ + L KM+LQ+HDEL F VP E + Sbjct: 863 AERNAINAPIQGSAADIIKVAMAHIHRRFVSNNLKAKMILQVHDELNFSVPASEKEIVQK 922 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I++ ME A ++ VPLK + NW E Sbjct: 923 IVIEEMEHAY----SMHVPLKADCGWGKNWLE 950 >gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3] gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3] Length = 916 Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust. Identities = 346/987 (35%), Positives = 524/987 (53%), Gaps = 94/987 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA+YA P L+ G A+ G NML LL + S AV Sbjct: 6 DNPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYKP----SQMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFRN++Y +YKA RP +P+ L Q+ + +A G+P + I G EADD+I T Sbjct: 61 VFDAKGKTFRNDMYSEYKAQRPPMPDDLRGQIAPLHQIIKALGLPLVCIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A KEG AV I + DKD+ QLV L +T+ + V +K+G+ PE ++ L Sbjct: 121 IATQASKEGRAVLISTGDKDMAQLVDDNVTLINTMTNTVMGPAEVTEKFGVGPELIIDLL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GD DNIPG+PG+G KTA +L G ++NIL ++ + K I E+ Sbjct: 181 ALQGDKADNIPGLPGVGEKTALAMLLGVGGVDNILAAPEKMPELGFRGSKTMPAKIAEHG 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +LS +L ++ DV + + +E N L+ +EF + + V Sbjct: 241 DMLKLSYELATIKLDVELEQDWRTMDIEPANKDELVKCYGEMEFKRWLAEV--------- 291 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +NK A E + + +K D +K Sbjct: 292 -----------LDNKSTATADEDNDEAVVK-------QDIEAK----------------- 316 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I++ + + W+ L + T +++ ++ + I Sbjct: 317 ----------YDTILSVEQLDSWIATLSKADLIAIDTETTSLNYMEAELVGI-------- 358 Query: 418 DDTSFKVET---IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDK 473 SF VE ++ LS H D+ L K + L ENE K+G N+KYD Sbjct: 359 ---SFAVEAGKAAYLPLS-HDYVDAP--EQLDKALVFEKLTPLLENEAIKKVGQNLKYDI 412 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 + GI ++G + D ML SYV +S S H++ +A K+L + + +EI + Sbjct: 413 SIFANAGIKLKGVQFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGAKQLT 472 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGI 588 ++I +A E++++ L+L L P+L + +L V+ ++ P+ID++S +E G+ Sbjct: 473 FNQIPLETAAPYAAEDADITLRLHQHLWPRLEKLPQLASVFTDIELPLIDILSTIERQGV 532 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ID LL Q S E+++ + L+ ++++G+ FNL+SPKQL ++ F KL +P KT G Sbjct: 533 LIDSMLLGQQSEELARKIDDLQTKAHEIAGQPFNLASPKQLQELFFEKLGYPIIKKTPKG 592 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T + L ++ D P+ K ILE R L+K+KSTY D LP +N ++ RVHT Y A+ Sbjct: 593 APSTAEEVLVELAL-DYPLPKIILEHRSLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANA 651 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S EPNLQNIPI+T+ G++IR AFI+P +K+++ADYSQIELRI+AH+++ L Sbjct: 652 ATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGRKILAADYSQIELRIMAHLSQDKGLL 711 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIH+ AAE+F V+ +V+ RR AK +NF +IYG+S F LA QL IPR+EA Sbjct: 712 TAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRAEA 771 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI YF R+PG+ Y+E+T+ GYV T+FGRR++ I + R ERAAI Sbjct: 772 QRYIDTYFKRYPGVLNYMEETRAIATDLGYVSTLFGRRLYLPAIKDRNAMRRQAAERAAI 831 Query: 889 NAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI ++AMI+V K +E + M++Q+HDELVFEV ++ + I Sbjct: 832 NAPMQGTAADIIKKAMINVAKWIETETNGEITMIMQVHDELVFEVDADKADSLQVKICEL 891 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M A L V L + +NW++ Sbjct: 892 MAAAA----TLDVELLAEAGIGDNWEQ 914 >gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA] gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA] Length = 952 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 355/1001 (35%), Positives = 553/1001 (55%), Gaps = 78/1001 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFL+D + IYR++YA P ++ K G +AI GF N L ++L K+ Sbjct: 1 MNSTDKLFLLDAYALIYRSYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E Y YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y + E + IE + K+ I Sbjct: 115 DDVIGTLATEAGRQGIITYMMTPDKDYGQLVSDNVFMYRPKHSGGFEVMGIEEIKNKFNI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 E+++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 RSTEQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVAEFGSIENLLAHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288 E S+ L ++ DVPI + + L+ E+ + +L + LEF LI+RV Sbjct: 234 EANREMITFSKFLATIKVDVPIKLDMTTLVREEPDEEKLRKIFEELEFRTLIDRVLKKSG 293 Query: 289 --------ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340 + + D A + +D T EN G ++ F++ +D + Sbjct: 294 APLSSSSNSVSPDLYAGTLFARPVDSPTPENNG-----------PVQGDLFANFADNGTG 342 Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400 N+E + L+ + + Y I + + +QKL T S T + Sbjct: 343 -NAENS----------NLTHLEMLDVDYQLIDTEEKRSEIIQKLLTTEILSIDTETTGTE 391 Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460 ++ + ++ S + + ++ V V ++D K I++ + +ENE Sbjct: 392 PMEAELVGMSFSNAENR---AYYV-------PVPANRDEALK------IVNEFRPLYENE 435 Query: 461 HFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR-- 517 + +K+G NIKYD +VL YG+ ++G D ML YVL H++ +A+ +L Y Sbjct: 436 NSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLRYRTIH 494 Query: 518 -KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 E++ SR K+ + + V +A E+++V L+L +L +L + H++ ++ P Sbjct: 495 IDELIGSRGKNQKSMRDLPPEDVYRYACEDADVTLKLKNVLEKELKKQSAEHLFYEIEMP 554 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS-GEKFNLSSPKQLGDILF 634 ++ V+ +E G++ID + LKQ S + L +E+ IY L+ GE FN++SPKQ+G++LF Sbjct: 555 LVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALANGETFNIASPKQVGEVLF 614 Query: 635 TKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 KLK AK TKTGQ+ T+ + LE + + II ILE+R L K+ STY D+LP IN Sbjct: 615 DKLKIVEKAKKTKTGQYVTSEEVLESLR-NKHAIIGKILEYRGLKKLLSTYIDALPQLIN 673 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753 RT R+HT ++ A T TGRL+S PNLQNIPI+ + G++IR+AFI + SADYSQI Sbjct: 674 PRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQI 733 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELRI+AH+++ + F + DIH AA+I+ V+I +V+ MRR AKT NF IIYGIS Sbjct: 734 ELRIMAHLSQDRNMIDAFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGIS 793 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 F LA ++ + R EA + I YF +P I EY++K+ R+NGYVETIF R+ +IN Sbjct: 794 VFGLAERMNVSRQEAKELIDGYFETYPQIKEYMDKSIQVARENGYVETIFHRKRFLPDIN 853 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S + +R ER AINAPIQGSAADI + AM +++ ++ + L KM+LQ+HDEL F VP Sbjct: 854 SRNAVVRGYAERNAINAPIQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHDELNFSVP 913 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E E +I++ ME+A + VPLK + NW E Sbjct: 914 EAEKEIIQKIVIEEMERAY----RMLVPLKADFGWGKNWLE 950 >gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 951 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 347/988 (35%), Positives = 551/988 (55%), Gaps = 57/988 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MNSIDKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E Y YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + E V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDRVFMYRPKHTGGFEVMGTEEVKTKFNI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 E+++ + L GD+ DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 QTTEQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E S+ L ++TDVPI + ++ L+ E+ N L + LEF LI+RV Sbjct: 234 ETNREMITFSKFLATIKTDVPIQLDMDSLVREEPNEEELRKIFEELEFRTLIDRVLKKGS 293 Query: 294 CDAANIEPV--VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351 ++++ P V D+ + + I+ F++ + + + ++ Sbjct: 294 GNSSSPTPTSPVPDLFAGTLFAQPQTSTPENSAPIQGDLFANFAGEGTGVSENSN----- 348 Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQ-QWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 L RL+ L D ++++T+D + + +QKL T S T + ++ + ++ Sbjct: 349 LTRLEML-------DVDYQLIDTEDKRAEIIQKLLTSEILSIDTETTGTEPMDAELVGMS 401 Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 S + + ++ + + +I++ + FENE +K+G NIK Sbjct: 402 FSDAENR--------AYYVPVPAEREE--------VLKIVNEFRPLFENEKSMKVGQNIK 445 Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-K 525 YD ++L YG+ ++G D ML YVL H++ +A+ +L Y E++ +R K Sbjct: 446 YDMIILQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIGARGK 504 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 + + + V +A E+++V L+L +L +L + H++ ++ P++ V+ +E Sbjct: 505 NQKNMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEQGAEHLFYEIEMPLVPVLVNIES 564 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK- 644 G+ +D + LKQ S + L +E+ IY+++GE FN+SS KQ+G++LF KLK AK Sbjct: 565 NGVLLDTEALKQSSQHFTVRLQEIEKEIYEMAGETFNISSAKQVGEVLFDKLKIVEKAKK 624 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TKTGQ+ T+ + L+ + II ILE+R L K+ STY D+LP IN RT R+HT ++ Sbjct: 625 TKTGQYVTSEEVLQSYRSKHD-IIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTSFN 683 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 A T TGRL+S PNLQNIPI+ + G++IR+AFI + SADYSQIELRI+AH+++ Sbjct: 684 QAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSED 743 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 + F + DIH AA+I+ ++I V+ MRR AKT NF IIYGIS F LA ++ + Sbjct: 744 KNMIDAFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVFGLAERMGVS 803 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R EA + I YF +P + EY++K+ R+NGYVETIF R+ +INS +R E Sbjct: 804 RQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNGVVRGYAE 863 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R AINAPIQGSAADI + AM +++ + + L KM+LQ+HDEL F VPE E +I+ Sbjct: 864 RNAINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKELVQKIV 923 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972 + ME+A ++ VPLK + NNW Sbjct: 924 IEEMEQAY----HMHVPLKADCGWGNNW 947 >gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44] gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44] Length = 937 Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust. Identities = 341/984 (34%), Positives = 534/984 (54%), Gaps = 59/984 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A P L R G P + G + ++Q RK+ A + Sbjct: 1 MSNSKTLVLVDGSSYLYRAYHAMPDL-RAIPGDPASPATGAIRGMVNMMQALRKDVQADY 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 +FD TFR+E+Y +YKA R +P+ L Q+ + Q G + + G EADD+ Sbjct: 60 AVCVFDASGPTFRDEMYTEYKATRSPMPDDLRSQIEPIHEVVQLLGWKVVAVPGVEADDV 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IAT A +G V + S DKDL QLV+ + DT+ +K D+ V ++G+PP M+ Sbjct: 120 IATLAQTAAAQGIQVIVSSGDKDLSQLVNEHVTIIDTMNGKKRDVAGVTAEFGVPPALMI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 QAL GD++DN+PG+ +G KTAA L+E+G+L+N++ A+ IK +N+ + + Sbjct: 180 DYQALVGDTVDNVPGVTKVGPKTAAKWLEEHGSLDNLIARAADIKGVAG-QNLRDAIASG 238 Query: 241 RL--SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 +L SR+LV ++T DC+ IS L L+ L + D+A Sbjct: 239 QLALSRQLVTMKT--------------DCDLSSYISGLPQLDAITLA-------EPDSAA 277 Query: 299 IEPVVLDINTTENKGIA---IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 + P KG+A + + S Q +++ Sbjct: 278 LAPFYEKYGF---KGLARTLGAAAAEAKAAKPGKAAKTDSAQGGLFDADDAAATEVAVTA 334 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 Q+ + YT I++ + +W+ K+ + TD++D ++ + I+ S Sbjct: 335 QQ------RDVLYTTILSEAQLDEWLAKISAAELTALDTETDSLDEMVARIVGISFSVA- 387 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 E +I L H D + + +L+ LK + E+ K+G ++KYD+ V Sbjct: 388 -------VGEAAYIPLR-HEGMDVPEQLDMDM-VLARLKPWLEDAGKKKLGQHVKYDQHV 438 Query: 476 LHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 +GI++RG+ D ML SYVL++ R H++ S+A + +S + +++ K+ IP Sbjct: 439 FANHGITVRGYAHDTMLQSYVLEADRP-HNLTSLALRHVSRSGISYEDLCGKGKNQIPFA 497 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590 ++S + ++ E+S+ L + L P++ LLH+YE L+ + + ++E G+ I Sbjct: 498 QVSVDKAAAYSCEDSDQTLDVHNTLWPRIQAHAGLLHIYE-LEMQTSEALFRIERNGVSI 556 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D L + S ++ +L LEE Y+++G+ FNLSSPKQLG+I F KL P KT TG Sbjct: 557 DAGELARQSNDLGARILKLEEEAYEIAGQPFNLSSPKQLGEIFFDKLGMPVVKKTATGAR 616 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + LE++ D P+ +LE R LSK+K TY D L RVHT Y+ A +T Sbjct: 617 STDEEVLEKL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVAVT 675 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIP++T G+++R AF++P K + SADYSQIELRI+AH++ L Sbjct: 676 GRLSSNDPNLQNIPVRTPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSA 735 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+N LD+HR AAE+FGV++++VS + RR+AK INF +IYG+S F LA L I AA Sbjct: 736 FKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAA 795 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI +YF R+PG+ Y+++T GYVET+FGRR+ EIN + ERAAINA Sbjct: 796 YIDKYFQRYPGVKRYMDQTVELAHAQGYVETVFGRRLVLPEINGGNGPRKKAAERAAINA 855 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QG+AAD+ ++AM++V L+ K +++Q+HDELVFE+PE +A + + Sbjct: 856 PMQGTAADLIKKAMVAVQARLDTEKPEVLVIMQVHDELVFELPE----SARDWVQAEIPA 911 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 +L VPL I ++W++ Sbjct: 912 IMAGVADLSVPLLAEIGFGSSWEK 935 >gi|333029493|ref|ZP_08457554.1| DNA polymerase I [Bacteroides coprosuis DSM 18011] gi|332740090|gb|EGJ70572.1| DNA polymerase I [Bacteroides coprosuis DSM 18011] Length = 928 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 350/992 (35%), Positives = 548/992 (55%), Gaps = 84/992 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M++ LFL+D + IYRA+YA P ++ K GL +AI GF N L ++L Sbjct: 1 MEQAKKLFLLDAYALIYRAYYAFIKNPRVNSK--GLNTSAILGFVNTLEEVLNKEN---- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H + FD TFR+E + DYKA R PE + +P+++ +A+ IP +E+QG+EA Sbjct: 55 PTHIGIAFDPAGPTFRHEAFEDYKAQREATPEDIKIAVPIIKDIIRAYKIPILEVQGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG 173 DD+I T A ++ + +++ DKD QLV +Y +K + + VI+K+ Sbjct: 115 DDVIGTLAKQANEKEISTYMMTPDKDYAQLVDKYVYMYRPKYGDKEFEILGPQEVIEKYD 174 Query: 174 IPPE-KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKR 229 + + +++ L L GDS DNIPG PG+G KTA LL+E+G++EN++ N ++K +KK Sbjct: 175 LENQSQIIDLLGLMGDSADNIPGCPGVGIKTAQKLLKEFGSIENLIENTDKLKGALKKKV 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 NI E + S+ L ++ DVPI + L+ L+ E+ + ++ + LEF L+ RV Sbjct: 235 EANI----EQIKFSKFLATIKVDVPIKLELDKLVREEMDKDKVREIFEELEFRTLLERV- 289 Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349 I T++ + I+T I+ FS + T E T + Sbjct: 290 ----------------IKETDSPTLQIQT-----GPIQGDLFSEFATNTQDTQKEST--E 326 Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409 + LE N Y I N DI++ +KL + T ++A ++ + I Sbjct: 327 IALEN---------NKKEYHLIDNEDDIEELSKKLMPFKEIALDTETTGLEAMEAEIVGI 377 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 + S K E +I + TK+ L+ +K EN+ LKIG NI Sbjct: 378 SFSVK--------KNEAYYIPFPKDQEE--------TKKRLNIIKPLLENKKSLKIGQNI 421 Query: 470 KYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSR 524 KYD L+L YGI + G D M+ YV+ H++ +A+ +L++ I Sbjct: 422 KYDLLILKNYGIEVVGKLFDTMIAHYVVQP-ELRHNMDYLAEIYLNHITIPIEDLIGPKG 480 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 K+ + ++S V +A E++++ QL + L + ++ ++ P++ V++ ME Sbjct: 481 KNQKSMRELSPEDVYIYACEDADITFQLKNAIEKDLKENQAEELFYTIEMPLVPVLTDME 540 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 TG+ +D+ LK +S + + L+++EE I+ L+ FN+SSPKQ+G+ILF KLK AK Sbjct: 541 YTGVLLDKKALKSLSKDFTDRLITIEEEIHKLADNDFNVSSPKQVGEILFDKLKIDEKAK 600 Query: 645 -TKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 TKTGQ+ T+ + L ++ D +PI++ IL++R L K+ STY D+LP INK+T ++HT Sbjct: 601 KTKTGQYVTSEEVL--LSYKDKHPIVEKILDYRGLKKLLSTYVDALPKLINKKTGKIHTS 658 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 ++ T TGRL+S PNLQNIPI+ G++IR+AFI SADYSQIELRI+AH++ Sbjct: 659 FNQTVTATGRLSSSNPNLQNIPIRDSDGKEIRKAFIPDQDSLFFSADYSQIELRIMAHLS 718 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + + F + DIH AA+++ +I ++ RR AKT NF IIYGIS F LA +++ Sbjct: 719 HDNNMMEAFLHGDDIHAATAAKVYKQDINTITSDQRRKAKTANFGIIYGISVFGLAERMQ 778 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R EA + I+ YF +P + EY++++ R+ GYVETIF R+ + +INS + +R Sbjct: 779 VERKEAKELIEGYFETYPQVKEYMDQSIVEAREKGYVETIFNRKRYLPDINSRNAVVRGF 838 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 +ER AINAPIQGSAADI + AM+++HK ++ KL +KM+LQ+HDEL F V E Q Sbjct: 839 SERNAINAPIQGSAADIIKVAMVNIHKRFKEEKLLSKMILQVHDELNFTVIPSEKEKVQQ 898 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I++ ME A L VPLK + NW E Sbjct: 899 IVIQEMENAY----KLSVPLKADFGWGENWLE 926 >gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] Length = 885 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 340/989 (34%), Positives = 524/989 (52%), Gaps = 134/989 (13%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K L LVDG+S I+RAF+A P L + +G+ NA+ GF ML Q +R+ + Sbjct: 4 KTARLLLVDGNSVIHRAFHALPPLQTR-EGIRTNAVYGFATML----QKAREMFKPDYII 58 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD+ VTFRNE+Y +YK RP+ L PQ LV+ A+ + + E++G+EADD+I Sbjct: 59 VAFDHSKVTFRNELYDEYKGTRPETDPELRPQFALVKRLLAAWNLASCEVEGYEADDLIG 118 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEK 178 T + G V I++ D+D +QLV + + E ID E + K +G+ PE+ Sbjct: 119 TLSRQGAATGLEVLILTGDRDALQLVGERVKVLLMRRGLSQVEVIDREAIKKNYGLEPEQ 178 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++AL GD+ DNIPG+PG+G KTA L+++YG+LE +L ++ IK ++ EN++ +A+ Sbjct: 179 LIDVKALMGDASDNIPGVPGVGEKTAVQLVRQYGDLEGVLAHSGEIKGRRVAENLVTFAD 238 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 ARL+R+L + P+T+ L + + +++ K LEF L+ V Sbjct: 239 QARLARRLATIDCQAPVTLDLAGCCNQSPDYEAVLALYKELEFHSLVKDV---------- 288 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 + E +G S +T+ + P L L+ L++L Sbjct: 289 -------LRAMEQEG------------------KKASQETTAVRGLSLPDPLTLDSLEEL 323 Query: 359 SQYP--------------INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404 ++ +NN SY + W + +G+A + Sbjct: 324 AELVARLVGKTDVALELILNNPSYLEAAAVAVGLAWEDGVAVLGTAGIE----------- 372 Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464 P A+A TL+ +V IF D K L +F N Sbjct: 373 -PAALA-GTLE----PLLRVNPIFHD----------AKRALV---------WFSNAG--- 404 Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524 G++ G D M+ Y+L+ S HD+ + + L+ E Sbjct: 405 --------------AGVADPG-GDTMVAGYLLNPSASRHDLPELCLEHLNLALVE----- 444 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 DS Q A + VI L L KL V + ++Y R++ P+ V+ ME Sbjct: 445 ---------GDSP-QLAAARRAAVIRLLHRELASKLQVAGMENLYRRVELPLTRVLGAME 494 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 G+ ++ + L + E+ L +L E IY+L+GE+FNL+SPKQL ILF KL P + Sbjct: 495 SYGVAVNMETLDLMGIELEGGLAALTEAIYELAGEEFNLNSPKQLAVILFEKLGLPPVKR 554 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TKTG + T A LE++ C +PI ++E+RQL+K+KSTY D L +N RT +HT ++ Sbjct: 555 TKTG-FSTDAAVLEELAC-RHPIAAKLVEYRQLAKLKSTYVDGLKPLVNPRTGSLHTSFN 612 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAK 763 T TGRL+S EPNLQNIP++ +LG+++R+AF+ P + L++ADYSQIELRILAHI+ Sbjct: 613 QTVTATGRLSSSEPNLQNIPVRLELGRRLRKAFVPHGPGRLLLAADYSQIELRILAHISG 672 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 + F DIH AAE+FGV + +V+P MRR AK +NF I+YGIS + L+ L I Sbjct: 673 DEAMIAAFRRGEDIHARTAAEVFGVPLGEVTPAMRRSAKAVNFGIVYGISDYGLSRDLGI 732 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 RSEA DYI+RYF R+ G+ Y+E+ RQ GYV T+ GRR + ++ S ++R+ Sbjct: 733 SRSEAHDYIERYFRRYRGVKAYLEEIVARARQEGYVTTLLGRRRYLPDLFSSNRNVRSFG 792 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER A+N PIQG+AADI + AM+ + + LE A +M+LQ+HDEL+F+VP++++ + + Sbjct: 793 ERTAMNTPIQGTAADIIKMAMVKIFRLLEAQYPAARMILQVHDELIFDVPDDDLPAVAGL 852 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + +ME + L+VPL+V++K NW Sbjct: 853 VKDTMEHT----LELQVPLQVDLKAGPNW 877 >gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] Length = 949 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 339/985 (34%), Positives = 540/985 (54%), Gaps = 66/985 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 ++ LFL+D + I+R +YA R DG +AI GF N L +L++ R SH Sbjct: 16 QDKRLFLIDAYAMIFRGYYALIRAPRMTSDGRDTSAIFGFTNSLIELIRRER----PSHL 71 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 AV+FD + R + +YKANR + PE + +P + +A +P + ++G+EADD+I Sbjct: 72 AVVFDVGQASVRTVDFAEYKANRNETPEAIQLAIPYIHRILKAMHVPILGVEGYEADDVI 131 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEK---IDIEHVIKKWGIP-P 176 T AEKEG+ +++ DKD QLV+ +Y +K + + ++ V +K+ I P Sbjct: 132 GTIACKAEKEGYTTFMVTPDKDFAQLVTDKIKIYKPGLKGAEFTILGVDEVKEKYEIEDP 191 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 ++++ A+ GDS+DNIPG+ G+G KTA L+EYGN+EN+L N IK K RE + Sbjct: 192 KQVIDFLAMMGDSVDNIPGLDGVGEKTAKKFLKEYGNIENLLANTHEIK-GKLREKVEAS 250 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 AE LS+KL + D PI E LE ++ +EF +L + + Sbjct: 251 AERGILSKKLATIICDAPIEFHQEQYDLETPEWEKVKEVFDEIEFRRLYENLYRAFAPAT 310 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 +PV + N ++++ F++ + ++ T + Sbjct: 311 ELSQPVQQKSAASANP-----------SSMQLDLFANFEELDHATRTKSTFE-------- 351 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +ND + ++T Q+ + L + + +F T T++ ++ + ++ S Sbjct: 352 -------DNDVLYQYIDTPKAQKMLAWNLMSQKAVAFDTETTTLNEMDAELVGLSFSYR- 403 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 K +I LS S+ + L ++FFE E K+ HN+K+D + Sbjct: 404 -------KGLAYYIPLSEDRSE--------AIQTLEIFREFFEKEDVSKVAHNLKFDYKI 448 Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPI 530 L +YG S++G D M+ Y+L+ H I +++ +L+Y I K K+ + Sbjct: 449 LQQYGFSLKGLLFDTMIAHYLLNPD-GKHVIDYLSEIYLNYKPVALESLIGKKGKNQLTF 507 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ + +A E++++ QL+ + P+L E L ++ +++ P++ V+++ME+ G+ + Sbjct: 508 RSLTVEEQTNYAAEDADITWQLYEVFAPQLKKENLEDLFYKVEMPLLRVLAKMELEGVAL 567 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649 D+ L Q S ++ +L LE I++L+ +FN++SP+QLG+ILF KLK P KTKTGQ Sbjct: 568 DEKWLAQESIDLENDLRGLEAKIFELADVEFNVNSPRQLGEILFEKLKLDPKAKKTKTGQ 627 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T++D+ Q + IIK ILE+R K+KSTY D+LP I+K RVHT +S + Sbjct: 628 Y-ATSEDVLQKLSAKHDIIKYILEYRTYQKLKSTYVDALPLQIDKDDNRVHTSFSQTTAA 686 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRLAS+ PNLQNIPI+T GQ+IR AF++ KK+ISADYSQIELR++A I+ + Sbjct: 687 TGRLASVNPNLQNIPIRTLRGQQIRGAFVAAEGKKIISADYSQIELRLIAEISNEENMIL 746 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F+N DIH AA +F + +E+V+ R AKT+NF IIYG F LA Q + R+EA Sbjct: 747 AFQNGEDIHVSTAARLFDIPLEEVTKTQRGQAKTVNFGIIYGQGAFALAEQTGLSRTEAK 806 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 I+ YF +P + +Y+ + ++ GYVETI R+ H +INS ++ ER A+N Sbjct: 807 QMIESYFENYPRLKKYMGEQVQKAQELGYVETILNRKRHLKDINSANFVVKAHAERNAVN 866 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 APIQGSAAD+ + AMI + + L + L TKMLLQ+HDEL+FE P+EE+ ++I ME Sbjct: 867 APIQGSAADVIKLAMIKIDQKLSELNLKTKMLLQVHDELLFEAPQEEVEMVMKLIKTEME 926 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A +VPL V + V +NW E Sbjct: 927 SA----FETKVPLLVEVGVGDNWLE 947 >gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] Length = 946 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 353/992 (35%), Positives = 550/992 (55%), Gaps = 75/992 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LFL+D + IYRA +A R G+ A+ GF N L ++L + +H V F Sbjct: 4 LFLLDAMALIYRAHFAFSKNPRVTSTGISTGAVFGFTNSLLEILLKEK----PTHIGVAF 59 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR++ + +YKANR + PE + +P + + IP + + G+EADDI+ T++ Sbjct: 60 DLQGPTFRHDNFTEYKANRQEQPEDISVAIPYIYRLLEGMNIPILGVPGYEADDIVGTFS 119 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIPP-EKMV 180 IA GF V +++ DKD MQLV+ LY E DI V+ K+ I +++ Sbjct: 120 KIAPPLGFDVYMMTMDKDYMQLVNEHVFLYRPAYMGNDVEIYDINKVLAKFNIKEVDQVR 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + L GD++DNIPGIPGIG KTA L+ ++G++EN++ NA ++K K++EN++ +A Sbjct: 180 DILGLQGDTVDNIPGIPGIGEKTAQKLIADFGSVENLIKNADQLK-GKQKENVINFAAQG 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS++L + +VPI E L +++ N L LEF L R+ Sbjct: 239 LLSKELATIHCEVPIEFDEEALRVKEYNIEALDQLFDELEFRTLKKRLFG---------- 288 Query: 301 PVVLDINTTENKGIAIETEIDRDT--TIKTSQFSSLSDQT-SKINSEQTPQKLFLERLQK 357 N A ETE +T T K++ SS + + +T + F E+ + Sbjct: 289 ----------NSSSASETEKKMETKATKKSAAVSSTGQMGLFGMEAAETITEEFDEKGE- 337 Query: 358 LSQYPINNDSYTKIVN---TKDIQQWVQKLETI----GSASFKIITDTMDAFHSKPIAIA 410 S+ I D+ +++ D + + +L + S F T +++A ++ + +A Sbjct: 338 -SKETIVRDTIDTVLHDYYVVDTEAEIVRLTNLLLLQESFCFDTETTSLNALEAELVGLA 396 Query: 411 ISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 IS F+ E +I + Q T+ IL L+ FE K+G N+ Sbjct: 397 IS---------FRAKEAYYIPFTSDQIQ--------TQRILDLLQPAFEKSSITKVGQNL 439 Query: 470 KYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSR 524 KYD LVL +Y ++ G D ML Y+L+ H + ++A+ +L+YT + I K Sbjct: 440 KYDLLVLKKYNFAIAGPLFDTMLAHYLLEP-EMRHGMDTLAEVYLNYTPVSIEQLIGKKG 498 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 + + ++E+A E++++ QL+ P + + L ++ ++ P+ +V++ ME Sbjct: 499 AKQGTMRDVEIEAIKEYAAEDADITFQLYKFFSPLVKDQNLNPLFNEVEMPLSEVLADME 558 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGA 643 + G++ID L + S+ + + ++E+ IY+ +G +FN+SSPKQLG+ILF KLK P+ Sbjct: 559 LEGVKIDTQALSEFSSLLQTEITAVEKEIYEHAGVQFNISSPKQLGEILFDKLKLDPNAK 618 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KTKTGQ+ T L +++ D+PI+ NIL++R+ K+KSTY D+LP + K RVHT + Sbjct: 619 KTKTGQYATGEDVLTKLDS-DHPILANILDYREFQKLKSTYVDALPLLLGK-DGRVHTSF 676 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIA 762 + A TGRL+S PNLQNIPI+TD G++IRRAF++ +I SADYSQIELRI+A + Sbjct: 677 NQAVAATGRLSSTNPNLQNIPIRTDRGKEIRRAFVARDNDHVILSADYSQIELRIMAAFS 736 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 K + F +DIH A+++F V IE V+ MRR AK +NF IIYGIS F L+ +L Sbjct: 737 KDESMLNAFRKGVDIHSTTASKVFKVPIEDVTADMRRKAKMVNFGIIYGISAFGLSQRLS 796 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IPR EAA+ I YF FP + Y++ N R+ YVETI GRR +INS ++R Sbjct: 797 IPRKEAAEIITAYFTEFPAVKAYMDACVNSAREVEYVETILGRRRFLRDINSRNMTMRGF 856 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAPIQGSAAD+ + AMI +H ++ L +KM+LQ+HDEL+F+ ++EI Sbjct: 857 AERNAINAPIQGSAADMIKVAMIRIHDWMKKENLKSKMVLQVHDELLFDAHKDEIDLLKT 916 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + M++A I L VP++V + + NW E Sbjct: 917 QVEIFMKEA----IALDVPMEVGMGIGENWLE 944 >gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99] gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99] Length = 917 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 351/987 (35%), Positives = 531/987 (53%), Gaps = 93/987 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA+Y+ P L+ G A+ G NML LL+ + + AV Sbjct: 6 ENPLVLVDGSSYLYRAYYSPPHLTNSK-GEATGAVYGVINMLRSLLKQYK----PTQMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 IFD TFRN++Y DYKA RP +P+ L Q+ PL R+ +A G+P + I G EADD+I Sbjct: 61 IFDAKGKTFRNDMYADYKAQRPPMPDDLRTQIEPLHRI-IRAMGLPLVCISGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T + A KEG +V I + DKD+ QLV L +T+ + + V +K+G+ PE ++ L Sbjct: 120 TISTQASKEGRSVLISTGDKDMAQLVDDNVTLINTMTNTIMGPDEVTEKFGVGPELIIDL 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GD DNIPG+PG+G KTA +L G ++ IL ++ + K + E+ Sbjct: 180 LALQGDKADNIPGLPGVGEKTAVAMLTGAGGIDKILAAPEKMPELGFRGSKTMPAKLAEH 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + LS L ++ DV + + L +E N LI +EF + + V Sbjct: 240 RDILELSYALATIKLDVELEQDWQDLTIEPANRDELIKCFAEMEFKRWLAEV-------- 291 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 LD T K D TT + E Q + E Sbjct: 292 -------LDNKTGSGK--------DEKTT----------------DEEVIKQDIKTE--- 317 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 YT I +++ W+ KL + T +++ +K + I Sbjct: 318 -----------YTTIYTHEELDLWIDKLTNADLIAIDTETTSLNYMEAKLVGI------- 359 Query: 417 KDDTSFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 SF +E ++ L H D+ K E L+ LK EN K+G N+KYD Sbjct: 360 ----SFAIEAGKAAYLPLG-HDYLDAP-KQLDQAEALAKLKPLLENPELKKVGQNLKYDI 413 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 + GI ++G D ML SYV +S + H++ +A K+L + +EI + Sbjct: 414 SIFANVGIKLQGIAFDTMLESYVFNSVATKHNMDDLALKYLGHKNISFEEIAGKGVKQLT 473 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGI 588 ++I +A E++++ L+L L P+L E +L V+ ++ P+I ++S +E G+ Sbjct: 474 FNQIDLEIAAPYAAEDADITLRLHQHLWPRLEKEPQLAAVFTDIELPLIQILSDIERGGV 533 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ID +L Q S E+++ + LE+ ++++GEKFNLSSPKQL + F KL +P KT G Sbjct: 534 LIDGMMLGQQSEELARTIDELEQKAFEIAGEKFNLSSPKQLQALFFEKLGYPIIKKTPKG 593 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 +TA+D+ D P+ K IL+ R L+K+KSTY D LP +N ++ R+HT Y A+ Sbjct: 594 A-PSTAEDVLVELALDYPLPKIILQHRSLAKLKSTYTDKLPLMVNAQSGRIHTSYHQANA 652 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S EPNLQNIPI+T+ G++IR+AFI+ KK+++ADYSQIELRI+AH+++ L Sbjct: 653 ATGRLSSSEPNLQNIPIRTEEGRRIRQAFIAREGKKVLAADYSQIELRIMAHLSQDKGLL 712 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIHR AAE+F V+ ++V+ + RR AK +NF +IYG+S F LA QL I R EA Sbjct: 713 TAFAAGKDIHRATAAEVFDVDFDEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDISRPEA 772 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 YI YF R+PG+ +Y+E+T+ GYV T++GRR++ I + R ERAAI Sbjct: 773 QKYIDTYFKRYPGVLKYMEETRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAI 832 Query: 889 NAPIQGSAADITRRAMISV-HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAP+QG+AADI ++AMI++ H + + +M++Q+HDELVFEV ++ + + Sbjct: 833 NAPMQGTAADIIKKAMINIAHWIATETRGEIEMIMQVHDELVFEVDSDKAEEMREKVCQL 892 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M A ++L V L + +NW++ Sbjct: 893 MADA----VSLDVELLAEAGIGDNWEQ 915 >gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970] gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970] Length = 939 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 355/1003 (35%), Positives = 541/1003 (53%), Gaps = 95/1003 (9%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKES 56 M L LVDGSS++YRA++A + R++ DG P A+ G NML +L R + Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHA---MLRQNLTAPDGAPTGALYGVLNMLRRL----RADY 53 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ---LP-LVRLATQAFGIPAIEI 112 + AV+FD FR++++ +YKA RP +P+ L PQ LP LVRL G P + I Sbjct: 54 PHDYCAVVFDAKGKNFRHQMFSEYKATRPPMPDDLRPQAEALPELVRLT----GWPVLVI 109 Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW 172 EADD+I T G V + + DKD+ QLV+ + L +T+ E +DIE V +K+ Sbjct: 110 GQVEADDVIGTLAKQGVGHGLQVIVSTGDKDMAQLVNESVTLVNTMSGETLDIEGVKEKF 169 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 G+ P+++ ALTGD +DN+PG+ G KTA L+ YG+L+ ++ +A IK K EN Sbjct: 170 GVRPDQIRDYLALTGDKVDNVPGVEKCGPKTAEKWLEAYGSLQGVMEHALEIK-GKVGEN 228 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC------NGPRLISFLKALEFTKLIN 286 + LS LV ++TDV + H L D P+ A++F + Sbjct: 229 LRAALPRLPLSYDLVTIKTDVDL-----HAELSDGLESLRRTTPKWAQL--AVDFKRWGF 281 Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346 R T+ +A + ++ + G++ + + +++ SE+ Sbjct: 282 R---TWLKEAES------RMHEAADGGLS-----------GSDAIGGKAAPAAEMPSERL 321 Query: 347 PQKLFL-ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405 P+K E+L Y + + KL T ++DA ++ Sbjct: 322 PEKAVAPEKL-----------DYQAVTTEAQFAALLDKLSQAEKIGIDTETTSLDAMNAS 370 Query: 406 PIAIAISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464 + I+I+ F+ E ++I V S + + + +L LK EN K Sbjct: 371 LVGISIA---------FQAGEAVYI--PVGHSLTAAPEQLDLQYVLDRLKPHLENSALKK 419 Query: 465 IGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEI 520 IG N+KYD+ V YGI++ G D ML SY+++S H + ++ +WL T + + Sbjct: 420 IGQNLKYDQHVFANYGIALNGIVGDAMLASYIIES-HLGHGLDELSGRWLGLETITYESL 478 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 I ++ E+A ++++ L+L LR ++ +K L +YE+++ P+ V+ Sbjct: 479 CGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHLRAQMD-DKQLEMYEKMELPVAQVL 537 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 +ME G+QID+ L + SAE+ L+ LE+ Y +G+ FNL+SPKQL +ILF K+ P Sbjct: 538 FEMERVGVQIDRAELARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIP 597 Query: 641 SGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 + KT G T LEQ+ D P+ K IL+ R L+K+KSTY D LP I+ R +R Sbjct: 598 TKGLKKTAKGGISTNEDVLEQL-APDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKR 656 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT Y+ A +TGRLA PNLQNIPI+T+ G+K+RRAF +PP ++SADYSQIELRI+ Sbjct: 657 VHTTYAQAVAITGRLAGNNPNLQNIPIRTEEGRKVRRAFTAPPGSVIVSADYSQIELRIM 716 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH++ L F+N D+HR AAE+FG+ E VS + RR+AKTINF +IYG+ + LA Sbjct: 717 AHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLA 776 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 L I A ++I RYF R+PG+ EY+++ + GYVET+FGRR++ +I ++ Sbjct: 777 KSLGIDNLSAKNFIDRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLPDIRHTNAN 836 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLE-------DHKLATKMLLQIHDELVFE 931 IR ERAAINAP+QG+A+D+ +RAMI V + L D L +K+++Q+HDELV E Sbjct: 837 IRARAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDDLLQSKLIMQVHDELVLE 896 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 VPE E+ + + M A + L VPL + NW+E Sbjct: 897 VPEAELDLVKEKLPQMM--AAVDDGMLDVPLAAEVGAGMNWEE 937 >gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492] gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492] Length = 958 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 346/988 (35%), Positives = 548/988 (55%), Gaps = 57/988 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFL+D + IYRA+YA P ++ K G +AI GF N L ++L K+ Sbjct: 8 MNSIDKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 61 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E Y YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 62 PTHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEA 121 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + E V K+ I Sbjct: 122 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDRVFMYRPKHTGGFEVMGTEEVKTKFNI 181 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 E+++ + L GD+ DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 182 QTTEQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK-V 240 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E S+ L ++TDVPI + ++ L+ E+ N L + LEF LI+RV Sbjct: 241 ETNREMITFSKFLATIKTDVPIQLDMDSLVREEPNEEELRKIFEELEFRTLIDRVLKKGS 300 Query: 294 CDAANIEPV--VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351 ++++ P V D+ + + I+ F++ + + + ++ Sbjct: 301 GNSSSPTPTSPVPDLFAGTLFAQPQTSTPENSAPIQGDLFANFAGEGTGVSENSN----- 355 Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQ-QWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 L RL+ L D ++++T+D + + +QKL T S T + ++ + ++ Sbjct: 356 LTRLEML-------DIDYQLIDTEDKRAEIIQKLLTSEILSIDTETTGTEPMDAELVGMS 408 Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 S + + ++ + + +I++ + FENE +K+G NIK Sbjct: 409 FSDAENR--------AYYVPVPAEREE--------VLKIVNEFRPLFENEKSMKVGQNIK 452 Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-K 525 YD ++L YG+ ++G D ML YVL H++ +A+ +L Y E++ +R K Sbjct: 453 YDMIILQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDELIGARGK 511 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 + + + V +A E+++V L+L +L +L + H++ ++ P++ V+ +E Sbjct: 512 NQKNMRDLPPEDVYRYACEDADVTLKLKNVLEKELKEQGAEHLFYEIEMPLVPVLVNIES 571 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK- 644 G+ +D + LKQ S + L +E+ IY+++GE FN+SS KQ+G++LF KLK AK Sbjct: 572 NGVLLDTEALKQSSQHFTVRLQEIEKEIYEMAGETFNISSAKQVGEVLFDKLKIVEKAKK 631 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TKTGQ+ T+ + L+ + II ILE+R L K+ STY D+LP IN RT R+HT ++ Sbjct: 632 TKTGQYVTSEEVLQSYRSKHD-IIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTSFN 690 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 A T TGRL+S PNLQNIPI+ + G++IR+AFI + SADYSQIELRI+AH+++ Sbjct: 691 QAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSED 750 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 + F + DIH AA+I+ ++I V+ MRR AKT NF IIYGIS F LA ++ + Sbjct: 751 KNMIDAFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVFGLAERMGVS 810 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R EA + I YF +P + EY++K+ R+NGYVETIF R+ +INS +R E Sbjct: 811 RQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNGVVRGYAE 870 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R AINAPIQGSAADI + AM +++ + + L KM+LQ+HDEL F VPE E +I+ Sbjct: 871 RNAINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKELVQKIV 930 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972 + ME+A + VPLK + NNW Sbjct: 931 IEEMEQA----YRMYVPLKADCGWGNNW 954 >gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697] gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697] Length = 952 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 354/1001 (35%), Positives = 553/1001 (55%), Gaps = 78/1001 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFL+D + IYR++YA P ++ K G +AI GF N L ++L K+ Sbjct: 1 MNSTDKLFLLDAYALIYRSYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E Y YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y + E + I+ + K+ I Sbjct: 115 DDVIGTLATEAGRQGIITYMMTPDKDYGQLVSDNVFMYRPKHSGGFEVMGIDEIKAKFNI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 E+++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 RSTEQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVAEFGSIENLLAHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288 E S+ L ++ DVPI + + L+ E+ + +L + LEF LI+RV Sbjct: 234 EANREMITFSKFLATIKVDVPIKLDMTTLVREEPDEEKLRKIFEELEFRTLIDRVLKKSG 293 Query: 289 --------ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340 + + D A + +D T EN G ++ F++ +D + Sbjct: 294 APLSSSSNSVSPDLYAGTLFARPVDSPTPENNG-----------PVQGDLFANFADNGTD 342 Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400 N+E + L+ + + Y I + + +QKL T S T + Sbjct: 343 -NAENS----------NLTHLEMLDVDYQLIDTEEKRSEIIQKLLTTEILSIDTETTGTE 391 Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460 ++ + ++ S + + ++ V V ++D K I++ + +ENE Sbjct: 392 PMEAELVGMSFSNAENR---AYYV-------PVPANRDEALK------IVNEFRPLYENE 435 Query: 461 HFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR-- 517 + +K+G NIKYD +VL YG+ ++G D ML YVL H++ +A+ +L Y Sbjct: 436 NSMKVGQNIKYDMIVLQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLRYRTIH 494 Query: 518 -KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 E++ SR K+ + + V +A E+++V L+L +L +L + H++ ++ P Sbjct: 495 IDELIGSRGKNQKSMRDLPPEDVYRYACEDADVTLKLKNVLEKELKKQSAEHLFYEIEMP 554 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS-GEKFNLSSPKQLGDILF 634 ++ V+ +E G++ID + LKQ S + L +E+ IY L+ GE FN++SPKQ+G++LF Sbjct: 555 LVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYALANGETFNIASPKQVGEVLF 614 Query: 635 TKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 KLK AK TKTGQ+ T+ + LE + + II ILE+R L K+ STY D+LP IN Sbjct: 615 DKLKIVEKAKKTKTGQYVTSEEVLESLR-NKHAIIGKILEYRGLKKLLSTYIDALPQLIN 673 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753 RT R+HT ++ A T TGRL+S PNLQNIPI+ + G++IR+AFI + SADYSQI Sbjct: 674 PRTGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCEFFSADYSQI 733 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELRI+AH+++ + F + DIH AA+I+ V+I +V+ MRR AKT NF IIYGIS Sbjct: 734 ELRIMAHLSQDRNMIDAFLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGIS 793 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 F LA ++ + R EA + I YF +P I EY++K+ R+NGYVETIF R+ +IN Sbjct: 794 VFGLAERMNVSRQEAKELIDGYFETYPQIKEYMDKSIQVARENGYVETIFHRKRFLPDIN 853 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S + +R ER AINAPIQGSAADI + AM +++ ++ + L KM+LQ+HDEL F VP Sbjct: 854 SRNAVVRGYAERNAINAPIQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHDELNFSVP 913 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E E +I++ ME+A + VPLK + NW E Sbjct: 914 EAEKEIIQKIVIEEMERAY----RMLVPLKADFGWGKNWLE 950 >gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319] gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319] Length = 920 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 339/986 (34%), Positives = 548/986 (55%), Gaps = 89/986 (9%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + I+R++YA +P ++ K GL +AI GFCN L ++L + +H AV Sbjct: 4 LFLLDAYALIFRSYYALIRSPRINSK--GLNTSAIMGFCNTLNEVLTKEK----PTHIAV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD+ TFR++ YP YKA R + PE + +PL++ +A IP +++ GFEADDII T Sbjct: 58 AFDH-GKTFRHDAYPQYKAQREETPEDIKLSVPLIKQILEALHIPILQVDGFEADDIIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL--------YDTVKEEKIDIEHVIKKWGIP 175 +G +++ DKD QL+ P + Y+T+ E++++ K+GIP Sbjct: 117 VATRFGADGIETFMLTPDKDYGQLIGPNVYMYRPKHGGGYETLGEKEVE-----SKYGIP 171 Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 P +++ + AL GD+ DN PG PG+G KTAA L+ ++G+++N+L + IK K RE + Sbjct: 172 TPAQVIDILALMGDTADNFPGCPGVGEKTAAKLISQFGSIDNMLAHTDEIK-GKLREKVE 230 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 E ++S+ L +RTDVPI + L+ + ++ + +L + + LEF LIN+ Sbjct: 231 AAVEDIKISKFLATIRTDVPIQLELDDMKVQQPDEEKLRAIFEELEFKTLINKF------ 284 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 +N + K +E ++D F+ + T +K E Sbjct: 285 -----------LNKDKEKSKVVENQLDL--------FAEFTPDTP-----SEAKKASFES 320 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 L K +Q+ +Y I N D+ + + T + S T + DA ++ + ++ S Sbjct: 321 L-KTTQH-----NYQLIDNEADLHRLCELFLTKKTLSLDTETTSTDAISAELVGLSFSVE 374 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 ++ E ++ + + + L + ++ K +ENE LK+G NIKYD Sbjct: 375 EK--------EAYYVPIPENREE------ALKR--VAIFKPVYENESILKVGQNIKYDYE 418 Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIP 529 VL YG+ ++G D M+ Y++ H++ +A+ L Y +E+L S+ K Sbjct: 419 VLSNYGVKLKGAMFDTMIAHYLIQP-ELRHNMDYMAETLLGYQTIHIEELLGSKGKKQKN 477 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 + +S + + E+A E++++ L+L +L PKL + ++ ++ P++ V++ ME+TG++ Sbjct: 478 MRDLSPTDIYEYAAEDADITLRLKNVLAPKLKELNVEELFWSIEMPLVRVLADMELTGVR 537 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTG 648 ID + LK+ S ++ + E I+ +GE+FN+SSPKQ+GDILF K++ KTKTG Sbjct: 538 IDTEALKETSKIFTERMRQYEVKIFKEAGEEFNISSPKQVGDILFGKMQILDKPKKTKTG 597 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q+ T+ + L+ I +PI++NIL +R + K+ STY ++LP IN RT +HT ++ A T Sbjct: 598 QYVTSEEVLQSIES-KHPIVRNILNYRGMKKLLSTYVEALPKLINSRTGHIHTSFNQALT 656 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++TD G++IR+ FI SADYSQIELRI+AH+++ + Sbjct: 657 ATGRLSSSDPNLQNIPVRTDDGKEIRKCFIPEEGCMFFSADYSQIELRIMAHLSEDDNMM 716 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F DIHR AA+I+ ++ V+ R+ AK NF IIYGI+ F LA ++ IP +EA Sbjct: 717 EAFREGYDIHRATAAKIWHEALDDVTDAQRKKAKQANFGIIYGITTFGLAQRMEIPNNEA 776 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 I+ YF FP + Y+E K R GY ET+F RR + INS +IR +ER AI Sbjct: 777 RALIQDYFRTFPKVQAYMEHAKELARSKGYAETLFHRRRYLPNINSRNGTIRGFDERNAI 836 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+ ADI + AM+ + ++ + +KM+LQ+HDEL F V +E +I++ M Sbjct: 837 NAPIQGTEADIIKVAMVRIWNRFKEEGIRSKMILQVHDELNFSVYPDEREKVEKIVLEEM 896 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 + A L VPL + NW E Sbjct: 897 QNA----YPLNVPLIADAGWGKNWLE 918 >gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18] gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18] Length = 920 Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust. Identities = 340/981 (34%), Positives = 547/981 (55%), Gaps = 79/981 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA +P ++ K GL +A+ GFCN L ++L + +H V Sbjct: 4 LFLIDAYALIYRSYYAFIKSPRINSK--GLNTSAVMGFCNTLNEVLTKEK----PTHIGV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD+ TFR++ +P+YKA R + PE + +PL++ +A IP +++ GFEADDII T Sbjct: 58 AFDH-GKTFRHDAFPEYKAQREETPEDIKLSVPLIKQVLEAMHIPILQVYGFEADDIIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIP-PEKM 179 +G +++ DKD QL+ P +Y +I + V +K+GI P ++ Sbjct: 117 IATRFGADGIDTFMLTPDKDYGQLIGPNVFMYRPRHGGGYEILGEKEVGEKYGISTPAQV 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L AL GDS DN PG PG+G KTAA L+ ++G+++N+L + IK K RE + E Sbjct: 177 IDLLALMGDSADNFPGCPGVGEKTAAKLINQFGSIDNMLQHTDEIK-GKLREKVENAVED 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 ++S+ L +RTDVP+ + L+ L +E + +L + + LEF LIN+ Sbjct: 236 IKMSKFLATIRTDVPMELDLDELKVEQPDETKLRAIFEELEFKTLINKF----------- 284 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 +N E+K +Q ++ T+ N P+ E + K + Sbjct: 285 ------LNKDESK-----------PKTDNNQLDLFAENTT--NESDEPKNAKFESI-KTT 324 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 Q+ Y + N ++++Q T S T + DA ++ + ++ S ++K Sbjct: 325 QH-----EYKLVENEEELRQLCDFFITKEFVSIDTETTSTDAISAELVGLSFSVEEKK-- 377 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 +F V +V + + K I+ K +E++ +KIG NIKYD VL RY Sbjct: 378 -AFYV-------AVPANYEEALK------IVQIFKPLYESDKIMKIGQNIKYDYEVLTRY 423 Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPIDKIS 534 G++++G D M+ Y++ H++ +A+ LSY +E+L + K + +S Sbjct: 424 GVTLQGKMFDTMIAHYLIQP-ELHHNMDYMAETLLSYQTIHIEELLGPKGKKQKNMRDLS 482 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + + E+A E++++ L+L +L P+L + ++ ++ P++ V++ ME+ G+ +D + Sbjct: 483 PTDIYEYAAEDADITLRLKNVLEPRLKELGVEELFWNIEMPLVRVLADMELNGVCLDTEA 542 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTT 653 L+ S ++ + E+ IY +GE+FN+SSPKQ+GDILF KL+ KTKTGQ+ T+ Sbjct: 543 LQDTSKIFTERMKQYEQEIYKEAGEEFNISSPKQVGDILFGKLQIMDKPKKTKTGQYVTS 602 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + L+ + +PI++NIL +R + K+ STY D+LP IN RT +HT ++ A T TGRL Sbjct: 603 EEVLQSLES-KSPIVRNILNYRGMKKLLSTYIDALPKLINPRTGHIHTSFNQALTATGRL 661 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIP++TD G++IR+ FI SADYSQIELRI+AH+++ + + F Sbjct: 662 SSSDPNLQNIPVRTDDGKEIRKCFIPEEGCLFFSADYSQIELRIMAHLSEDENMMEAFRE 721 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIHR AA+I+ V+I+KV+ R+ AK NF IIYGI+ + LA ++ IP EA + I+ Sbjct: 722 GHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMDIPNGEAKELIE 781 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF FP + Y+E K R GY ET+F RR + +INS +++R ER AINAPIQ Sbjct: 782 GYFRTFPKVQAYMEHAKEVARAKGYAETLFHRRRYLADINSRNATVRGFAERNAINAPIQ 841 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+ ADI + AM+ + + + + +KM+LQ+HDEL F V EE +I++ M+ A Sbjct: 842 GTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSVFPEEREQVERIVIEEMQNA-- 899 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 L VPL + NW E Sbjct: 900 --YPLNVPLIADAGWGKNWLE 918 >gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205] gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205] Length = 923 Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust. Identities = 344/983 (34%), Positives = 541/983 (55%), Gaps = 79/983 (8%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYR++YA P ++ K GL + + GFCN L ++L + +H Sbjct: 5 DKLFLLDAYALIYRSYYAFMKAPRINSK--GLNTSCVMGFCNTLNEILTKEK----PTHI 58 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 AV FD+ TFR+E +P YKA R + PE + +P+++ +A+ IP +++ GFEADDII Sbjct: 59 AVAFDH-GKTFRHEAFPAYKAQREETPEDIKLSVPIIKNILEAYHIPILQVDGFEADDII 117 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177 T A ++G +++ DKD QLV ++ EK+ ++ + +K+ I P Sbjct: 118 GTVALKAGEKGMETYMLTPDKDYAQLVRNNVFMFRPRHGGGYEKLGVQEIEEKYSITSPL 177 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ L AL GDS DN PG PG+G KTA L+ E+G++E ++ N+S++K K RE + Sbjct: 178 QVIDLLALMGDSADNFPGCPGVGEKTAIKLINEFGSVEGLIENSSQVK-GKLREKVEGAV 236 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E R+S+ L +RTDVP+ I +E L + + +L LEF NRV Sbjct: 237 EDIRMSKFLATIRTDVPVEIRMEDLKRVEPDNTKLDEIFTELEFKSFANRVL-------- 288 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 NK ++T+ + + Q + +S++ P+ E ++ Sbjct: 289 -------------NKPKKVQTKAIGELDLFGVQLA---------DSKEEPKNASFETIKT 326 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 S SY I D ++ L T S T + A ++ + ++ + K Sbjct: 327 TSH------SYKLIDTEVDAKKLYDYLLTFNILSLDTETTSTTAIDAELVGLSFAV---K 377 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + +F V ++ +++ K I++ K +EN LK+G NIKYD VL Sbjct: 378 EKEAFYV-------AIPANREEALK------IVNIFKPLYENPEILKVGQNIKYDYEVLI 424 Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPIDK 532 YGI ++G D ML Y++ H++ +A+ +L+Y +E++ + K+ + Sbjct: 425 NYGIEIQGKMFDTMLAHYLIQP-ELYHNMDYLAEVFLNYQTIHIEELIGPKGKNQKSMRD 483 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 ++ S + E+A E++++ L+L +L KL ++ ++ P++ V++ ME+TG+ ID Sbjct: 484 LAPSDIYEYAAEDADITLRLKNVLESKLKEIDCEDLFWNVEMPLVPVLAHMEMTGVCIDT 543 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651 D LK+ S ++ L +E +IY+L+GE FN++SP+Q+G+ILF K+K KTKTGQ+ Sbjct: 544 DTLKETSENLTNRLNEIEHHIYELAGESFNIASPRQVGEILFGKMKIVEKPKKTKTGQYV 603 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+ + L+Q+ +PII IL +R L K+ TY D+LP IN RT +H ++ A T TG Sbjct: 604 TSEEVLQQLRS-KSPIIDEILNYRGLKKLLGTYIDALPKLINSRTGHIHASFNQAITATG 662 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP++ D G++IRR FI P SADYSQIELRI+AH+++ + + F Sbjct: 663 RLSSSDPNLQNIPVRDDDGKEIRRCFIPEPGCLFFSADYSQIELRIMAHLSQDPNMVEAF 722 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIH AA+I+ +I++V+ R+ AKT NF IIYGI+ F LA ++ I EA Sbjct: 723 REGSDIHAATAAKIWHEDIKEVTDAQRKKAKTANFGIIYGITTFGLAQRMNIENREAKQI 782 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I+ YF FPG+ Y+EK K R+ GY ET+F RR + +INS ++R ER AINAP Sbjct: 783 IEDYFRTFPGVQAYMEKAKEMAREKGYAETLFHRRRYLPDINSKNGTVRGFAERNAINAP 842 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGS ADI + AMI + + +KM++Q+HDEL F V EE +I+V M+ A Sbjct: 843 IQGSEADIIKVAMIRIFNRFRAEGIRSKMIIQVHDELNFSVYPEEKEKVEKIVVEEMQNA 902 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL + NNW E Sbjct: 903 ----YQLSVPLVADAGWGNNWLE 921 >gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] Length = 939 Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust. Identities = 361/992 (36%), Positives = 535/992 (53%), Gaps = 77/992 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 MQK+ LFL+D + IYRA+YA P L+ G NA GF + L L+ + Sbjct: 1 MQKK--LFLLDAMALIYRAYYALIRNPRLTST--GRNTNAQFGFTSTLLDLINKEK---- 52 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AV FD A T R+ + DYKANR PE +L L ++ + F IP +E+ G+EA Sbjct: 53 PTHMAVAFDTHAPTERHTTFVDYKANRMDAPEDILDSLDDIKRIIKGFNIPVVELDGYEA 112 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWG 173 DD+I T + A G+ V +++ DKD QLV +Y KEE + + V +KW Sbjct: 113 DDVIGTLAWQAADAGYDVYMVTPDKDYGQLVRNNVFIYKPPYMGNKEEILGPKEVCEKWQ 172 Query: 174 IPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 I +++ + L GD++DNIPGIPG+G KTA LL +Y ++E ++ NA +I K E Sbjct: 173 ITDVHQVIDILGLMGDAVDNIPGIPGVGEKTAMKLLSQYHSVEEVIANADKIG-GKMGEK 231 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA--- 289 I AE+A LS++L + TDVP+T E ++D N +LI LEF L R+ Sbjct: 232 IKAGAESAVLSKQLATIITDVPVTFHEEDFCIKDPNREQLIEVFTELEFKTLGKRILGDG 291 Query: 290 -TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348 T + A V LD+ E +G A + +Q LS + N TP Sbjct: 292 FATPAAEPATPPKVQLDLFGNEIQGAAPPVS-------EEAQDVPLSIMVADKNINNTPH 344 Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408 L D+ K ++ Q++ SF T DA + Sbjct: 345 NYILA------------DTPEKRAELLELLLKQQEI------SFDTETTGTDANAVDLVG 386 Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468 ++ S E +I + +Q + I+ F H IG N Sbjct: 387 MSFSIK--------AGEGWYIPVPADKAQ--------AQAIVDSFLPLFNTTHITLIGQN 430 Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLD-SGRSSHDIASIAQKWLSYT----RKEILK 522 IKYD +V+ YG+ G D ML Y+++ GR D+ ++ ++L Y I K Sbjct: 431 IKYDMIVMKWYGVEFNGPVFDTMLAHYLIEPEGRRGMDL--LSAQYLQYEPVSIETLIGK 488 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K + + +++E+A+E++++ LQL P L ++ + V+ ++ P++ V++ Sbjct: 489 KGKGQGNMRDVEIDKIKEYAVEDADITLQLKEKFAPLLPLKAVDKVFYDVENPLVRVLTD 548 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641 ME GI +D L S E+ + EE++Y +G +FNL+SPKQLG++LF KL P Sbjct: 549 MEYEGIALDIQALSDYSRELETEIKRAEESVYTQAGVRFNLASPKQLGEVLFEKLLLDPK 608 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTGQ+ T L ++ + I+++IL +R+LSK+KSTY D+LP +NKRT RVHT Sbjct: 609 AKKTKTGQYATGEDVLAKL-ANKHQIVEDILVFRELSKLKSTYVDALPLMLNKRTNRVHT 667 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAH 760 Y+ A +TGRL+S PNLQNIPI+TD G+++R+AF++ L+SADYSQIELRI+A Sbjct: 668 SYNQAVAVTGRLSSNNPNLQNIPIRTDRGREVRKAFVAKNEDYVLMSADYSQIELRIIAA 727 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 I+ + F LDIH AA+++GV + V+ MRR+AK++NF IIYG+S F L+ Sbjct: 728 ISGDVHMIDAFRQGLDIHAATAAKVYGVELADVTADMRRNAKSVNFGIIYGVSAFGLSEN 787 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I R EA I YF ++P I +Y++ +QNGYVET+ GR+ +INS + +R Sbjct: 788 LGIARGEAKTLIDNYFAQYPSIKKYMDDQIKSAQQNGYVETLLGRKRWLKDINSSNAVVR 847 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER AIN PIQG+AAD+ + AMIS+HK+L+ L ++M+LQ+HDELVF+V ++EI Sbjct: 848 GYAERNAINMPIQGTAADMIKLAMISIHKTLKKENLRSRMILQVHDELVFDVHKDEIEQI 907 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I M A LP L VP+ V I + NW Sbjct: 908 KPLIQDGMRNA-LP---LAVPVDVEIGIGVNW 935 >gi|222475578|ref|YP_002563995.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida] gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida] Length = 864 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 329/971 (33%), Positives = 526/971 (54%), Gaps = 142/971 (14%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 +VD F++RA+YA P L G P+ + GF N+L K L A + AV+FD Sbjct: 20 VVDAYGFLFRAYYALPQLHTSQ-GAPIGGVYGFINILLKHLLTHN----ADYIAVVFDTG 74 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 + FR+ +YP YK NRP++PE LL Q +R A A GI + E+ FEADD+IAT + Sbjct: 75 SKNFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDVIATLSTKY 134 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 E V +I+ DKDL+QL+ ++D +K + + E+V+ K+G+ P+K++ + ALTGD Sbjct: 135 ASEDVQVRVITADKDLLQLMGEHVQIFDPIKNKYLTDEYVVDKFGVTPDKLLDVLALTGD 194 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA--RLSRKL 246 + DNIPG+P IG KTAA L+ ++G+L+ N+L AE + R++ Sbjct: 195 ASDNIPGVPSIGVKTAARLINQFGSLD----------------NVLSCAEKVEQKKCREM 238 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV--L 304 ++ D + L+ D L+S +A+EF +N+ A D+ + + Sbjct: 239 LIQHAD-------QALLSRD-----LVSLQRAVEFDGDLNKYAKKLP-DSEQLLAFLEKY 285 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 ++N+ K I+ SL + + + P+ Sbjct: 286 ELNSLRGK-------------IEQCYQISLESPDRQGGAGEMPES--------------- 317 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 +T+D +++K E +G + AFH+K IA T+++ Sbjct: 318 --------HTEDPVAFLRKCENVG----------LLAFHAK---IADGTINE-------- 348 Query: 425 ETIFIDLSVHTSQDS--TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 LSV ++ T + + + ++ ++ LKI H+ K ++ R+ Sbjct: 349 ------LSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVHDAK----LIMRHFPD 398 Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542 + F+D+MLMSY LD+G H +A +A ++L Q+ Sbjct: 399 LGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLH------------------------QKFP 434 Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 + ++QL ++R KL++++L VY +L++P++ V+ +M+ G+++D ++LKQ+S + Sbjct: 435 ARLACTLVQLHGVMRNKLLLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDF 494 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQIN 661 ++ SLE+ IYDL+G KFN++S +QLG +LF ++ S AK +G + T A+ L ++ Sbjct: 495 HGSIRSLEKEIYDLAGCKFNVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELA 554 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 I +L+WR SK+KSTY D+L + T+RVHT YS+ ST TGR++S PNLQ Sbjct: 555 AEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQ 614 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI++ G +IR+AF++ KL+SADYSQ+EL+I+AHIA + F DIH + Sbjct: 615 NIPIRSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVT 674 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A +IFG + P++RR AK+INF IIYG+SPF LA + I R EA+ Y+ +YF +P Sbjct: 675 AQQIFGDGV--TDPELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQYFRSYPE 732 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I Y+E K + R+ GY T FGR+ + INS + ++R ERAAINAPIQG+AAD+ + Sbjct: 733 IKNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVK 792 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +AMI++ LE ++LQ+HDEL+ EVPE + ++++ ME N VP Sbjct: 793 KAMINLRNKLE----VGAIILQVHDELLVEVPESHVDRVAKLMKEVMEGVA----NFSVP 844 Query: 962 LKVNIKVSNNW 972 LKV+I V ++W Sbjct: 845 LKVDIGVGSSW 855 >gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico] gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia] Length = 853 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 329/971 (33%), Positives = 526/971 (54%), Gaps = 142/971 (14%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 +VD F++RA+YA P L G P+ + GF N+L K L A + AV+FD Sbjct: 9 VVDAYGFLFRAYYALPQLHTSQ-GAPIGGVYGFINILLKHLLTHN----ADYIAVVFDTG 63 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 + FR+ +YP YK NRP++PE LL Q +R A A GI + E+ FEADD+IAT + Sbjct: 64 SKNFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDVIATLSTKY 123 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 E V +I+ DKDL+QL+ ++D +K + + E+V+ K+G+ P+K++ + ALTGD Sbjct: 124 ASEDVQVRVITADKDLLQLMGEHVQIFDPIKNKYLTDEYVVDKFGVTPDKLLDVLALTGD 183 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA--RLSRKL 246 + DNIPG+P IG KTAA L+ ++G+L+ N+L AE + R++ Sbjct: 184 ASDNIPGVPSIGVKTAARLINQFGSLD----------------NVLSCAEKVEQKKCREM 227 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV--L 304 ++ D + L+ D L+S +A+EF +N+ A D+ + + Sbjct: 228 LIQHAD-------QALLSRD-----LVSLQRAVEFDGDLNKYAKKLP-DSEQLLAFLEKY 274 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 ++N+ K I+ SL + + + P+ Sbjct: 275 ELNSLRGK-------------IEQCYQISLESPDRQGGAGEMPES--------------- 306 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 +T+D +++K E +G + AFH+K IA T+++ Sbjct: 307 --------HTEDPVAFLRKCENVG----------LLAFHAK---IADGTINE-------- 337 Query: 425 ETIFIDLSVHTSQDS--TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 LSV ++ T + + + ++ ++ LKI H+ K ++ R+ Sbjct: 338 ------LSVAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVHDAK----LIMRHFPD 387 Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542 + F+D+MLMSY LD+G H +A +A ++L Q+ Sbjct: 388 LGAFDDVMLMSYSLDAGSHDHSLAGMAYRYLH------------------------QKFP 423 Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 + ++QL ++R KL++++L VY +L++P++ V+ +M+ G+++D ++LKQ+S + Sbjct: 424 ARLACTLVQLHGVMRNKLLLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDF 483 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQIN 661 ++ SLE+ IYDL+G KFN++S +QLG +LF ++ S AK +G + T A+ L ++ Sbjct: 484 HGSIRSLEKEIYDLAGCKFNVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELA 543 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 I +L+WR SK+KSTY D+L + T+RVHT YS+ ST TGR++S PNLQ Sbjct: 544 AEGVEIADKVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQ 603 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI++ G +IR+AF++ KL+SADYSQ+EL+I+AHIA + F DIH + Sbjct: 604 NIPIRSKEGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVT 663 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A +IFG + P++RR AK+INF IIYG+SPF LA + I R EA+ Y+ +YF +P Sbjct: 664 AQQIFGDGV--TDPELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQYFRSYPE 721 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I Y+E K + R+ GY T FGR+ + INS + ++R ERAAINAPIQG+AAD+ + Sbjct: 722 IKNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVK 781 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +AMI++ LE ++LQ+HDEL+ EVPE + ++++ ME N VP Sbjct: 782 KAMINLRNKLE----VGAIILQVHDELLVEVPESHVDRVAKLMKEVMEGVA----NFSVP 833 Query: 962 LKVNIKVSNNW 972 LKV+I V ++W Sbjct: 834 LKVDIGVGSSW 844 >gi|332878784|ref|ZP_08446499.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683135|gb|EGJ56017.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 929 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 345/985 (35%), Positives = 530/985 (53%), Gaps = 83/985 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + I+R +YA P ++ K GL +AI GF N L+ +++ R H AV Sbjct: 5 LFLLDAYALIFRGYYAFIKNPRINSK--GLNTSAILGFMNSLFDVMKKERPH----HLAV 58 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD R E++ DYKANR + PE + +P + A IP IE +G+EADDII T Sbjct: 59 AFDKGGSVARTELFADYKANREETPEAIRIAIPYIHQILNALHIPIIEKEGYEADDIIGT 118 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-------- 175 AEK+ + V +++ DKD QLVS +Y + DIE WG+ Sbjct: 119 LAKQAEKQDYQVYMVTPDKDYAQLVSDNIFMYRPPRGGN-DIE----IWGVKEVQEKFEV 173 Query: 176 --PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + GD++DNIPG+PG+G KTA LL ++G+LEN+L N ++K K RENI Sbjct: 174 QNPLQVIDFLGMMGDAVDNIPGLPGVGEKTAKKLLADFGSLENLLANTDQLK-GKLRENI 232 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E LS++L + DVP+ + + + + + LEF +L+ Y Sbjct: 233 ENNKEKGILSKQLATIMLDVPVVFDEKDCEVSTPDFEAVGKLFEELEFRQLLVNFQKVYQ 292 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 +A ++ A ++D ++ F+ K + TP Sbjct: 293 PEA-----------VVQSNQKAPSAQLDM-FAVQGDLFAQPQVAVEKKTAANTPH----- 335 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 +L+ P+ + + + F T +DA ++ + I+ Sbjct: 336 -YYQLADTPMAQQLLLQSLLQQT------------EVCFDTETTAIDALEAELVGISFCW 382 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 K ++ V + + NTL + FFENE K+G N+KYD Sbjct: 383 TAHKG--------YYVPFPVDKEEATALLNTL--------RPFFENEKITKVGQNLKYDL 426 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 VL YGI ++G D M+ Y+++ H++ +++ +L YT + ++ K+ Sbjct: 427 KVLQNYGIKVQGALFDTMIAHYLINPDM-RHNMDLLSETYLGYTPIAIESLIGKGKAQRS 485 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 + ++ +V+E+A+E+++V QL + + +L VY L+ P++ V++ ME G+ Sbjct: 486 MRTVALEEVKEYAVEDADVTWQLKDVFKAELPKVNAQKVYADLEMPLLKVLAVMEREGVT 545 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA-KTKTG 648 +D LK+ S + + LE I + +G FNL+SPKQLGDILF KLK S KTKTG Sbjct: 546 LDVAYLKEYSKTLDAEIAQLEATIAEQAGTPFNLASPKQLGDILFEKLKIDSKPKKTKTG 605 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q+ T+ + L + I+ +ILEWRQ+ K+KSTY D+LP +N RT RVHT Y Sbjct: 606 QYATSEEVLAPF-AAKHKIVADILEWRQVQKLKSTYVDALPLEVNPRTGRVHTTYMQTVA 664 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPL 767 TGRL+S PNLQNIPI+T+ GQ++R+AFI+ L+SADYSQIELRI+A +++ + Sbjct: 665 ATGRLSSNNPNLQNIPIRTERGQRVRKAFIARNDDYILLSADYSQIELRIIAALSEEHNM 724 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F + DIHR AA++F V +E V+ + R HAKT+NF IIYG+S F L+ Q + RS+ Sbjct: 725 IESFLHGEDIHRATAAKVFNVPLEAVTREQRSHAKTVNFGIIYGVSAFGLSAQTDLSRSQ 784 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 + + I Y+ +P + YI+K +F +++GYVET+ GRR + +I+S +R ER A Sbjct: 785 SKELIDTYYATYPNLRNYIQKQIHFAQEHGYVETVLGRRRYLPDIHSRNQVVRGAAERNA 844 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +NAPIQGSAADI + AMI ++ L+ +L T+MLLQ+HDELVF+VP+ E+ +I Sbjct: 845 VNAPIQGSAADIIKIAMIRIYDLLQAQQLQTRMLLQVHDELVFDVPKTELEIVKPLIKEV 904 Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972 ME A L VPL ++ V NNW Sbjct: 905 MESA----FTLAVPLVADLGVGNNW 925 >gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49] gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49] Length = 949 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 338/995 (33%), Positives = 535/995 (53%), Gaps = 80/995 (8%) Query: 6 HLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 LFL+D + I+R +YA P ++ K G+ +AI GF N +++ R + H A Sbjct: 7 RLFLIDAFALIFRGYYALIKNPRINSK--GMDTSAIMGFMNSFLDVIKKERPD----HLA 60 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD RNE++ YKANR + P+ + +P + +A +P + +G+EADD+I Sbjct: 61 VCFDKGGSAARNEMFEAYKANRDETPDGIKIAIPYIYKILEAMQVPIMVKEGYEADDVIG 120 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP------- 175 T + AEK G+ +++ DKD QLVS +Y + + WGIP Sbjct: 121 TLSKQAEKAGYTTFMVTPDKDFAQLVSENIFMYRPM------FGGGYETWGIPQVQKRFE 174 Query: 176 ---PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 P +++ + GD+ DNIPG+PG+G KTA ++++G++E +L N ++K K +E Sbjct: 175 VENPLQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIKQFGSMEGLLENTDQLK-GKMKEK 233 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 ++ AE LS+KL + DVP+ E + + + + LEF +L + Sbjct: 234 VIANAELGLLSKKLATIMLDVPVAFNAEDFEMSTPDVAAVTEIFEELEFRRLTTNFTKAF 293 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQK 349 +A + T A +TE + I + QFS T++ + +K Sbjct: 294 SVEA------MASKGTNHQDTPAKKTETKKAAPITNAGEGQFSLFGGDTTETATTSNSRK 347 Query: 350 LF--LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 E +L Q + + +Q L S F T ++ ++ + Sbjct: 348 TIKDTEHFYQLVQPGMGTTLF------------IQNLMKQPSVCFDTETTGLNPLTAELV 395 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 IA S K +I +EI+ L+ FFE KIG Sbjct: 396 GIAFSWEAGKG--------FYIAFPKEKEA--------AQEIIELLRPFFEATEIEKIGQ 439 Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----K 522 N+KYD VL +Y I ++G D ML Y+++ H++ +A+ +L+YT I K Sbjct: 440 NLKYDLKVLRKYDIVVKGQLFDTMLAHYLINPDMR-HNMDILAETYLNYTPVSITELIGK 498 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K+ + + + E+A+E++++ LQL +L ++ ++ P++ V++ Sbjct: 499 KGKNQKSMRDVPVADQTEYAVEDADITLQLKEHFSKELGEANTQKLFTDIEVPLLRVLAA 558 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641 ME GI +D+ L +S ++ ++ SLE+NIY +GE+FN++SPKQLG+ILF K+K Sbjct: 559 MEAEGINLDKTFLNSLSDDLESDIASLEKNIYAEAGEEFNIASPKQLGEILFGKMKLVEK 618 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTGQ+ +TA+D+ D+ II ++LE+R L+K+KSTY D+LP + TQRVHT Sbjct: 619 PKKTKTGQF-STAEDVLSALAKDHKIIADVLEYRGLAKLKSTYVDALPLQVEPATQRVHT 677 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILA 759 Y TGRL+S PNLQNIPI+T+ G+++R+AF+ P + L++ADYSQIELRI+A Sbjct: 678 DYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFV-PRDENYVLLAADYSQIELRIIA 736 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 +++ + + F+N DIH A+++F V +E+V+ + R +AKT+NF IIYG+S F L+ Sbjct: 737 ALSQEETMMEAFKNGEDIHASTASKVFDVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSN 796 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 Q + R EA + I Y+ +P + Y+ + NF R NGYVETI GRR + + IN + + Sbjct: 797 QTSLSRGEAKELIDAYYETYPKLKHYMSEQVNFARDNGYVETIMGRRRYLNAINGSNAIV 856 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER A+NAPIQGSAADI + AMI++++ LE+ TKMLLQ+HDELVF+V ++E+ Sbjct: 857 RGAAERNAVNAPIQGSAADIIKIAMINIYRKLEEGNYKTKMLLQVHDELVFDVHKDELDE 916 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I H ME A L + VPL V + + NW E Sbjct: 917 MKTMIKHEMENAYL----MDVPLDVEVGIGQNWLE 947 >gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36] gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36] Length = 951 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 345/988 (34%), Positives = 547/988 (55%), Gaps = 57/988 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MNSIDKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E Y YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + E V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDNVFMYRPKHTGGFEIMGTEEVKTKFSI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 +++ + L GD+ DNIPG PG+G KTA L+ ++G++EN+L + ++K + + Sbjct: 175 QSTAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLVAQFGSIENLLEHTDQLK-GALKTKV 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E S+ L ++TDVPI + ++ L+ E+ N L + LEF LI+RV Sbjct: 234 ETNREMIAFSKFLATIKTDVPIRLKMDSLVREEPNEEELRKIFEELEFRTLIDRVLKKGS 293 Query: 294 CDAANIEPV--VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351 ++++ P V D+ + + I+ F++ + + + ++ Sbjct: 294 GNSSSPTPTSPVPDLFAGTLFAQPQTSTPENSAPIQGDLFANFAGEGTGVSENSN----- 348 Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQ-QWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 L RL+ L D ++++T+D + + +QKL T S T + ++ + ++ Sbjct: 349 LTRLEML-------DVDYQLIDTEDKRAEIIQKLLTSEILSIDTETTGTEPMDAELVGMS 401 Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 S + + ++ + + +I++ + FENE +K+G NIK Sbjct: 402 FSDAENR--------AYYVPVPAEREE--------VLKIVNEFRPLFENEKSMKVGQNIK 445 Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR----KEILKSRK 525 YD ++L YG+ ++G D ML YVL H++ +A+ +L Y K I K Sbjct: 446 YDMIILQNYGVQVKGKLFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHIDKLIGARGK 504 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 + + +S V +A E+++V L+L +L +L + H++ ++ P++ V+ +E Sbjct: 505 NQKNMRDLSPEDVYRYACEDADVTLKLKNVLEKELKEQGAEHLFYEIEMPLVPVLVNIES 564 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK- 644 G+ +D + LKQ S + L +E+ IY+++GE FN+SS KQ+G++LF KLK AK Sbjct: 565 NGVLLDTEALKQSSQHFTVRLQEIEKEIYEMAGETFNISSAKQVGEVLFDKLKIVEKAKK 624 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TKTGQ+ T+ + L+ + II ILE+R L K+ STY D+LP IN RT R+HT ++ Sbjct: 625 TKTGQYVTSEEVLQSYRSKHD-IIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTSFN 683 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 A T TGRL+S PNLQNIPI+ + G++IR+AFI + SADYSQIELRI+AH+++ Sbjct: 684 QAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSED 743 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 + + F + DIH AA+I+ ++I V+ MRR AKT NF IIYGIS F LA ++ + Sbjct: 744 KNMIEAFLSGHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVFGLAERMGVS 803 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R EA + I YF +P + EY++K+ R+ GYVETIF R+ +INS +R E Sbjct: 804 RQEAKELIDGYFETYPQVKEYMDKSIQVAREQGYVETIFHRKRFLPDINSRNGVVRGYAE 863 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R AINAPIQGSAADI + AM +++ + + L KM+LQ+HDEL F VPE E +I+ Sbjct: 864 RNAINAPIQGSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKELVQKIV 923 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972 + ME+A ++VPLK + NNW Sbjct: 924 IEEMEQAY----RMQVPLKADCGWGNNW 947 >gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P] gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P] Length = 980 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 343/994 (34%), Positives = 532/994 (53%), Gaps = 68/994 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + +FLVD + I+R +YA P ++ K GL +AI GF N L +++ + + Sbjct: 33 MSDQKRVFLVDAFALIFRGYYAFIKNPQINSK--GLDTSAIMGFMNSLLDVIKREKPD-- 88 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 H AV FD R E++ YKANR + PE + +P ++ +A IP + GFEA Sbjct: 89 --HLAVCFDKGGSVDRVEMFEAYKANRDETPEAIKIAVPYIQEILKAMHIPIMVKAGFEA 146 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175 DD+I T + AEKEG+ +++ DKD QLVS +Y DI WG+P Sbjct: 147 DDVIGTLSKQAEKEGYKTFMVTPDKDFAQLVSDNIFMYKPRFGGGYDI------WGVPEV 200 Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 P +++ + GDS DNIPG+PG+G KTA L YG +EN+L N +K Sbjct: 201 QEKFGVTDPLQVIDFLGMMGDSADNIPGLPGVGEKTAKKFLTTYGTMENLLANTHELK-G 259 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 K RE + + LS+KL + DVP+T + L+ + P++ LEF L+ Sbjct: 260 KMREKVEAAKDLGLLSKKLATIMLDVPVTFNAKDFELDQPDMPKVTELFNELEFRNLLKN 319 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347 T+ D A E N +E K I+ ++T I QF + + SE+ Sbjct: 320 FTKTFAIDTA--EETGASKNGSEEK---IKATPKKETLIPEGQFDLFAAPGTGSVSEE-- 372 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 E N Y I + ++ L + F T + A + I Sbjct: 373 -----EIASGFKTISTTNHFYQHIDSPFARTLLLRNLMKQTAVCFDTETTGLKALEVELI 427 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 IA S K V +D T+ IL + FFE+E KIGH Sbjct: 428 GIAFSYETGKG------------YYVSFPEDQAE----TQRILEDFRPFFESE-IEKIGH 470 Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILK 522 N+KYD VL Y + ++G D M+ Y+++ H++ +A+ +L+Y + I K Sbjct: 471 NLKYDIKVLSTYKMPVKGKLFDTMIAHYLINPDMR-HNMDVLAETYLNYQPISIAELIGK 529 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K+ + + + + E+A+E++++ QL L +L + ++ ++ P++ V++ Sbjct: 530 KGKNQLSMRSVPLKEQTEYAVEDADITFQLKQLFTGELENGNVTKLFNDIELPLVSVLTA 589 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641 MEI GI ++ D LK++S ++ ++ LE++IY+ +GE+FN++SPKQLG +LF K++ Sbjct: 590 MEIEGINVNTDFLKELSVALTADIDRLEKSIYEQAGEEFNIASPKQLGIVLFEKMELVKK 649 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTGQ+ T +D+ ++ IIK+I E+RQ K++STY D+LPN +N +T R+HT Sbjct: 650 PKKTKTGQY-ATGEDILSYLAKEHDIIKDIQEYRQYKKLQSTYVDALPNEVNPKTGRIHT 708 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAH 760 Y A TGRL+S PNLQNIPI+T G+++R+AF+ L++ADYSQIELRI+A Sbjct: 709 QYMQAVAATGRLSSNNPNLQNIPIRTARGREVRKAFVPRDENHVLLAADYSQIELRIIAA 768 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ + F+N DIH AA++F V + +V+ R +AKT+NF I+YG+S F L+ Q Sbjct: 769 LSEEENMINAFKNGEDIHASTAAKVFNVPLNEVTRDQRSNAKTVNFGIVYGVSAFGLSNQ 828 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 + RSEA + I Y+ +P + Y+ +F R++GYVET+ RR + +INS + +R Sbjct: 829 TDLSRSEAKELIDTYYETYPKLKAYMSAQVDFAREHGYVETVLNRRRYLKDINSRNAVVR 888 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 N ER A+NAPIQGSAADI + AMI++ K E ++MLLQ+HDELVF+ ++E+ Sbjct: 889 NGAERNAVNAPIQGSAADIIKLAMINIQKRFEKEGFRSRMLLQVHDELVFDTHKDELEII 948 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 II + ME A + VPL V + + NW E Sbjct: 949 KPIIKYEMEHA----FKMSVPLDVEVGIGENWLE 978 >gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12] gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12] Length = 917 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 345/989 (34%), Positives = 528/989 (53%), Gaps = 97/989 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA+Y+ P L+ G A+ G NML LL K+ + AV Sbjct: 6 ENPLVLVDGSSYLYRAYYSPPHLTNSK-GEATGAVYGVINMLRSLL----KQYEPTQMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFRN++Y DYKA RP +P+ L Q+ PL R+ +A G+P + I G EADD+I Sbjct: 61 VFDAKGKTFRNDMYEDYKAQRPPMPDDLRTQIEPLHRI-IRAMGLPLVCISGVEADDVIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T + A K G AV I + DKD+ QLV L +T+ + V +K+G+ PE ++ L Sbjct: 120 TISTQASKSGRAVLISTGDKDMAQLVDENVTLINTMTNTIMGPAEVTEKFGVGPELIIDL 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GD DNIPG+PG+G KTA +L G ++ IL ++ + K + E+ Sbjct: 180 LALQGDKSDNIPGLPGVGEKTAVAMLTGAGGIDKILAAPEKMPELGFRGSKTMPAKLAEH 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 +E +LS L ++ DV + + L ++ + LI +EF + + V Sbjct: 240 SEILKLSYALATIKLDVELEQDWQDLTIKPADRDELIECFGEMEFKRWLADV-------- 291 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 LD T K + + T +++ + +Q Sbjct: 292 -------LDNKTDSGK-----------------------------SEKNTDEEVIKQDIQ 315 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 YT I +++ W+ KL + T +++ +K + I+ + ++ Sbjct: 316 T---------EYTTIYTHEELDLWIDKLANADLIAIDTETTSLNYMDAKLVGISFA-IEA 365 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + ++D Q E L+ LK EN K+G N+KYD + Sbjct: 366 GKAAYLPLGHDYLDAPEQLDQ---------AEALAKLKPLLENPELKKVGQNLKYDISIF 416 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 GI ++G D ML SYV +S + H++ +A K+L + + +EI + ++ Sbjct: 417 ANVGIKLQGIAFDTMLESYVFNSVATKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQ 476 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQID 591 I +A E++++ L+L L P+L E +L V+ ++ P+I V+S +E G+ ID Sbjct: 477 IDLETAAPYAAEDADITLRLHQHLWPRLEKEPELASVFTDIELPLIQVLSDIERGGVLID 536 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +L Q S E+++ + LE+ ++++GEKFNLSSPKQL + F KL +P KT G Sbjct: 537 SMMLGQQSGELARTIDELEQKAFEIAGEKFNLSSPKQLQVLFFEKLGYPIIKKTPKGAPS 596 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L ++ D P+ K IL+ R L+K+KSTY D LP +N ++ RVHT Y A+ TG Sbjct: 597 TAEEVLVELAL-DYPLPKIILQHRSLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANAATG 655 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S EPNLQNIPI+T+ G++IR AFI+ KK+++ADYSQIELRI+AH+++ L F Sbjct: 656 RLSSSEPNLQNIPIRTEEGRRIRHAFIAREGKKVLAADYSQIELRIMAHLSQDEGLLTAF 715 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIHR AAE+F V+ +V+ + RR AK +NF +IYG+S F LA QL IPR EA Y Sbjct: 716 AAGKDIHRATAAEVFDVDFGEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRPEAQKY 775 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I YF R+PG+ +Y+E+T+ GYV T++GRR++ I + R ERAAINAP Sbjct: 776 IDTYFKRYPGVLKYMEETRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAP 835 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATK------MLLQIHDELVFEVPEEEITTASQIIV 945 +QG+AADI ++AMI++ H +AT+ M++Q+HDELVFEV + + Sbjct: 836 MQGTAADIIKKAMINIA-----HWIATETHGEIDMIMQVHDELVFEVDSDRAEEMQAKVC 890 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A ++L V L + +NW++ Sbjct: 891 QLMADA----VSLDVELLAEAGIGDNWEQ 915 >gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] Length = 942 Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust. Identities = 338/1010 (33%), Positives = 545/1010 (53%), Gaps = 106/1010 (10%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFLVD + I+R +YA P ++ K G +AI GF N L+ +++ + Sbjct: 1 MASKKRLFLVDAYAMIFRGYYALIKNPRINSK--GQDTSAIMGFMNSLFDVIKRENPD-- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 H AV FD R E+Y +YKANR P ++ +P+++ A IP +EI G EA Sbjct: 57 --HLAVCFDKDGSKDRKEMYVEYKANRDATPTVIKDSIPIIQDILHAMEIPVVEISGMEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175 DDII T AEK+ + V +++ DKD QLV+ + + + + ++KWGIP Sbjct: 115 DDIIGTLAIQAEKQNYEVHMVTPDKDFAQLVTENIFMQRPAR-----MGNGVEKWGIPEV 169 Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 PE+++ + GD+ DNIPG+PG+G KTA LQ++G++E +L N ++K Sbjct: 170 QKKFGVERPEQVIDFLGMMGDAADNIPGLPGVGEKTAKKFLQQFGSMEVLLENTDQLK-G 228 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 K +E I + AE RLS++L + TD +T + N +++ K LEF +L + Sbjct: 229 KMKEKIEKNAELGRLSKRLATIITDCDVTFDEVKYEVSPPNVEKVLDIFKELEFRRLTEQ 288 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDT-----TIKTSQFSSLSDQTSKIN 342 Y NKG AI + ++T T QFS + T N Sbjct: 289 FVKMY------------------NKGEAIVEKPSQNTSSSPQTAGAGQFSLFGNDTDVSN 330 Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQK----------LETIGSASF 392 E P + D Y + +T Q+V+ L S F Sbjct: 331 IE-----------------PSHFDGYKTLKSTDHHYQYVKGGLSLKLFIEILMKQNSVCF 373 Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452 T ++ ++ + IA S K V +D +E++ Sbjct: 374 DTETTSLKTLDAELVGIAFSWESHKG------------FYVAFPEDQNE----AQELVEK 417 Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK 511 L+ FFE+ K+G N+KYD VL Y + ++G D ML Y+++ H++ +A+ Sbjct: 418 LRPFFESTEIEKVGQNLKYDIKVLANYKLKVKGPLFDTMLAHYIINPDMR-HNMNILAET 476 Query: 512 WLSYTRKEI----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 +L+Y+ + I K K + +S ++A+E++++ QL +L Sbjct: 477 YLNYSPQPIEDLIGKKGKRQKTMRTVSLEDQTQYAVEDADITFQLKTYFEKELKEASNEP 536 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ ++ P++ V++ MEI GI +D+ L+ +S ++ +++ LE+++Y + +FN+ SPK Sbjct: 537 LFKDMEIPLLRVLAAMEIEGINLDKSALENISEKLDEDIERLEKSVYVEAEGEFNIGSPK 596 Query: 628 QLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 QLG+ILF KL+ KTK+GQ+ T + L D+ I++ +LEWRQLSK+KSTY D Sbjct: 597 QLGEILFGKLEIAKKPKKTKSGQYSTGEEVLSNY-AKDHKIVREVLEWRQLSKLKSTYVD 655 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 +LP I+ RT+RVHT + TGRL+S PNLQNIPI+T+ G+++R+AF+ P + Sbjct: 656 ALPKQIHPRTKRVHTEFMQTVAATGRLSSNNPNLQNIPIRTERGREVRKAFV-PRDENYV 714 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L++ADYSQIELRI+A +++ + F+N DIH AA +FGV+IE+V+ R +AKT+ Sbjct: 715 LLAADYSQIELRIIAALSQEKTMMNAFKNGEDIHASTAARVFGVDIEEVTRAQRSNAKTV 774 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF IIYG+S F L+ Q + R+E+ + I+ Y+ +P + +Y+++ F +++GYV+T+ G Sbjct: 775 NFGIIYGVSAFGLSNQTDLTRNESKELIETYYKTYPKLRDYMDEQVEFAKEHGYVKTVMG 834 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +IN+ +R+ ER A+NAPIQGSAADI + AMI+++ +LE+ +KMLLQ+ Sbjct: 835 RRRYLKDINAKNHIVRSAAERNAVNAPIQGSAADIIKVAMINIYDALEEQNFKSKMLLQV 894 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL+F+ ++EI + ++ ME A L VPL V + NW E Sbjct: 895 HDELIFDAHKDEIDALTALVKDKMENA----FKLDVPLDVEMGTGQNWLE 940 >gi|332886111|gb|EGK06355.1| hypothetical protein HMPREF9456_00229 [Dysgonomonas mossii DSM 22836] Length = 933 Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust. Identities = 352/985 (35%), Positives = 547/985 (55%), Gaps = 73/985 (7%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA P ++ K G +A+ GF N L +LL RKE+ +H AV Sbjct: 3 LFLLDAYALIYRSYYAFIKNPRVNSK--GQNTSAVFGFVNTLEELL---RKEN-PTHIAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD P TFR++ Y YKA R + PE + +P+++ A+ I +E+ +EADD+I T Sbjct: 57 AFDPPGGTFRHDAYEKYKAQRQETPEDIRAAVPIIKEIIAAYNIKELEVPYYEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----TVKEEKIDIEHVIKKWGIP-PEK 178 AEKE V +++ DKD QL S +Y + +D + +++K+ + P++ Sbjct: 117 IAKKAEKENIDVYMMTPDKDYGQLTSDHVFMYKPKFAGSGFDVLDAKAIMEKYELSSPDQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEY 236 M+ L L GD+ DNIPG PG+G KTA LL+EYG +EN+L + S IK K+R E+ Sbjct: 177 MIDLLGLMGDASDNIPGCPGVGPKTAQKLLEEYGTIENLLEHTSEIKGALKQRLED---N 233 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E S+ L ++TDVPI + + N ++ + + LEF LINRV T D+ Sbjct: 234 KEQIIFSKFLATIKTDVPIDFNKDEFARREINAEKISAIFEELEFRTLINRVLKT---DS 290 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 PV NTT ++ I Q ++ ++S + LQ Sbjct: 291 IPSHPVR---NTTTHEAI---------------QGDLFAELLPPVDSSSDTTTVNYSALQ 332 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 +L P SY + K+I + + L S F T +D S+ + ++ + Sbjct: 333 ELKDIP---HSYHLVEEEKEILELISTLSNQESCCFDTETTGLDPIVSELVGMSFA---- 385 Query: 417 KDDTSFK-VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 FK E ++ + + K+++ + FFENE LKIG NIKYD +V Sbjct: 386 -----FKEGEAYYVPVPADFDE--------AKKLIDKFRPFFENEKILKIGQNIKYDIIV 432 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPI 530 L +Y I +RG D M+ Y+++ H++ +A+ +L Y E++ ++ K+ + + Sbjct: 433 LKKYDIHVRGKLFDTMIAHYLINP-ELRHNMDYMAETYLKYRTIHIDELIGAKGKNQLNM 491 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 + Q+ ++A E+++V L+L +L + + L ++ ++ P+I V++ ME TG+++ Sbjct: 492 RSLRPDQISDYACEDADVTLKLKRILEKAIEKQDLSKLFYEIELPLIYVLADMEFTGVRL 551 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649 D L + S ++ L ++E I+ L +FN++S KQ+G++LF KLK KTKTGQ Sbjct: 552 DTVALGEYSKTLTIELQNIESEIFKLGETEFNINSAKQVGEVLFDKLKIIDKPKKTKTGQ 611 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T+ + LE I +PI+ ILE+R L K+ STY D+LP + + ++HT ++ T Sbjct: 612 YVTSEETLESIK-NTHPIVNKILEYRGLKKLLSTYIDALPLLVEPKDGKIHTSFNQTVTA 670 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S PNLQNIPI+ G++IR++FI+ SADYSQIELRI+AH+++ + + Sbjct: 671 TGRLSSTNPNLQNIPIRDAQGREIRKSFIADEGCLFFSADYSQIELRIMAHLSQDPSMVE 730 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F + DIH AA+I+ + I++V+ MRR AKT NF IIYGIS F LA +L IPR EA Sbjct: 731 AFNSGEDIHAATAAKIYKLKIDEVTSDMRRKAKTANFGIIYGISVFGLAERLTIPRGEAK 790 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 + I YF +P + EY++K R+ YVET+FGR+ + +INS +++R ER AIN Sbjct: 791 ELIDGYFETYPKVKEYMDKCITDAREKTYVETVFGRKRYLPDINSRNATVRGYAERNAIN 850 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 APIQGSAADI + AM ++ K E + +KM+LQ+HDEL F V E EI +I++ ME Sbjct: 851 APIQGSAADIIKVAMNNIFKRFEKENIKSKMILQVHDELNFNVLENEIDKVQKIVIEEME 910 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A L VPL+ + NW E Sbjct: 911 NA----YKLAVPLRADCGKGKNWLE 931 >gi|332291323|ref|YP_004429932.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5] gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5] Length = 949 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 339/991 (34%), Positives = 542/991 (54%), Gaps = 72/991 (7%) Query: 4 ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + LFL+D + I+R +YA P ++ G+ V+AI GF N L+ +++ R + H Sbjct: 9 QKRLFLLDAYALIFRGYYALIKNPRITSS--GMDVSAIMGFTNSLFDVIKRERPD----H 62 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV FD + R E + DYKANR + PE + +P ++ +A IP IE QG EADD+ Sbjct: 63 LAVAFDKGGSSARVEAFEDYKANRDETPEAIRIAIPHIQEILRAMHIPIIERQGVEADDL 122 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP----- 175 I T + AEKEGF V +++ DKD QLVS +Y + + + I+ WGIP Sbjct: 123 IGTLSKQAEKEGFKVYMVTPDKDYAQLVSENIFMYKPAR-----MGNGIEIWGIPEVQKR 177 Query: 176 -----PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 PE+++ + GD+ DNIPG+PG+G KTA + YG++E +L N ++K K + Sbjct: 178 FEVERPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIAAYGSMEGLLANTDKLK-GKMK 236 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 E ++E AE LS+KL + D +T + L + + + + LEF ++ ++ Sbjct: 237 EKVIENAELGLLSKKLATIMLDCDVTFNAKDYELSEPDAEAVGKKFEELEFRRMKDQFIK 296 Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350 + +A + + T K +A + S F S T+ S+ + +K Sbjct: 297 IFSGEAD--QGTQVSSTPTAKKAVASNA-----GAGQFSLFGGDSGATAAAVSDASTRKT 349 Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 K +Q+ Y K+ + + ++Q L S F T +D ++ + IA Sbjct: 350 I-----KDTQH-----FYQKVDSPLARKLFIQNLNKQSSVCFDTETTGLDPLVAELVGIA 399 Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 S K +I + + ++ L+ FFEN KIG N+K Sbjct: 400 FSWEAGK--------GYYIPFPESKEE--------AQALIEELRPFFENTAIEKIGQNLK 443 Query: 471 YDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRK 525 YD VL +Y + ++G D ML Y+++ H++ +A+ +L+YT + I K K Sbjct: 444 YDIKVLAKYNVKVKGKLFDTMLAHYLINPDM-RHNMDVLAETYLNYTPVSITELIGKKGK 502 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 + + +S E+A+E++++ LQL +L +++ ++ P++ V++ ME+ Sbjct: 503 NQKSMRDVSVDDQTEYAVEDADITLQLKQHFEKELDEAGTRKLFDDIEIPLLRVLAAMEV 562 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAK 644 GI +D L+ +S +++ ++ L I+ +GE+FN+ SPKQLG+ILF K+K K Sbjct: 563 EGINLDVSFLQSLSGDLNADIERLTSEIFAEAGEEFNIGSPKQLGEILFDKMKLVDKPKK 622 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TKTGQ+ +TA+D+ D+ II+ +L++R LSK+KSTY D+LP + + RVHT Y Sbjct: 623 TKTGQY-STAEDVLSYLAKDHDIIQKVLDYRGLSKLKSTYVDALPEQV-AQDGRVHTDYM 680 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAK 763 TGRL+S PNLQNIPI+T+ G+++R+AF+ L++ADYSQIELRI+A +++ Sbjct: 681 QTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFVPRDENHTLLAADYSQIELRIIAALSE 740 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 + Q F + DIH AA++F V +E+V+ + R +AKT+NF IIYG+S F L+ Q + Sbjct: 741 EENMIQAFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDL 800 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 R EA + I Y+ +P + Y+ + F R+NGYV+T+ RR + + INS +R Sbjct: 801 SRGEAKELIDNYYKSYPKLRNYMSELVEFARENGYVKTVLDRRRYLNGINSSNGVVRGAA 860 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER A+NAPIQGSAADI + AMI++ + LE+ TKMLLQ+HDELVF+VP +E+ ++ Sbjct: 861 ERNAVNAPIQGSAADIIKIAMINIFEKLENSDYKTKMLLQVHDELVFDVPNDELDAIKEL 920 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I ME A + VPL V + + NW E Sbjct: 921 IKTEMESA----FKMAVPLDVEVGLGQNWLE 947 >gi|332881618|ref|ZP_08449266.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680257|gb|EGJ53206.1| DNA-directed DNA polymerase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 923 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 342/985 (34%), Positives = 541/985 (54%), Gaps = 80/985 (8%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYRA+YA +P ++ K GL +AI GF N L ++L SH Sbjct: 2 DRLFLLDAYALIYRAYYAFIKSPRINSK--GLNTSAILGFVNTLEEVLNKEH----PSHI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR+E YP+YKA R + PE + +P+++ +A+ IP +E+ GFEADD+I Sbjct: 56 GVAFDPAGPTFRHEAYPEYKAQREETPEAIRTAVPIIKDIIRAYRIPILEVAGFEADDVI 115 Query: 122 ATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIP- 175 T A G +++ DKD QLV+ +Y +K + ++ V +K+ I Sbjct: 116 GTLATQAAAHGNLETYMMTPDKDYGQLVNERVKMYRPKFGDKDFEIMGVKEVTEKFDISS 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ + L GDS DNIPG PG+G KTA+ L+ ++G++EN+L + +K + + Sbjct: 176 PMQVIDILGLMGDSSDNIPGCPGVGGKTASKLVNQFGSIENLLEHTDELK-GSLKTKVET 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 + +T S+ L ++TDVPIT+ LE L ++ + L + LEF L+ R + Sbjct: 235 HRDTIAFSKFLATIKTDVPITLDLEALTTKEPDAEALQRLFEDLEFRTLLER---KFSKK 291 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 EP + S F+ +D++ + + + Sbjct: 292 QPTAEPGFF----------------------QGSLFAEFADESPEAS-----------KY 318 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 LS+Y + Y I +D Q+ + T S T D +K + ++ S Sbjct: 319 SNLSKYKKEDFDYQLIETKEDRQRIIDLFVTKDFLSLDTETTGTDPISAKLVGLSFSV-- 376 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 +++ +F V I +Q +I++ K +E+E LKIG NIKYD +V Sbjct: 377 -EENQAFYVP---IPQDFEEAQ----------KIVNEFKSVYEDERILKIGQNIKYDLMV 422 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPI 530 L YGI+++G D M+ Y+L H + +A+ +L+Y +E++ + K+ + Sbjct: 423 LQNYGITLKGEIFDTMIAHYLLQP-ELRHGMDYLAEVYLNYQTIHIEELIGPKGKNQKNM 481 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 + SQV E+A E++++ L+L + PKL E ++ ++ P++ V++ ME G+ I Sbjct: 482 ADLPPSQVYEYACEDADITLKLKNVFEPKLKEEGCYDLFREVEMPLMPVLAWMERNGVCI 541 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQ 649 D + LK+ S +K + LEE I+ L+GE FN++SPKQ+G++LF KLK K TKTGQ Sbjct: 542 DTEALKETSTLYTKEMNRLEEEIHALAGEPFNIASPKQVGEVLFEKLKISEKPKKTKTGQ 601 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T+ + LE + +PI++ ILE R L K+ TY D+LP IN T +HT ++ T Sbjct: 602 YVTSEEVLETLRT-RHPIVEKILEHRGLKKLLGTYIDALPKLINPETGHIHTSFNQTITT 660 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S PNLQNIP++ + G++IR+AFI P + SADYSQIELRI+AH++ + + Sbjct: 661 TGRLSSSNPNLQNIPVRNEEGKEIRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHMIE 720 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIH AA+I+ +E+V+ + R AKT NF IIYGI+ F LA ++ + R+EA Sbjct: 721 AFREGHDIHAATAAKIYKKPLEEVTREERSKAKTANFGIIYGITVFGLAERMNVSRAEAK 780 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 + I YF +P + EY++K+ R+ GY ETI+ R+ + +INS + +R ER AIN Sbjct: 781 ELIDGYFTTYPKVKEYMQKSIETAREKGYTETIYHRKCYLRDINSHNAVVRGYAERNAIN 840 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 APIQGSAADI + AMI+++ + + +KM+LQ+HDEL F V EE QI++ ME Sbjct: 841 APIQGSAADIIKIAMIAIYHRFQKEHIRSKMILQVHDELNFSVYPEEKERVQQIVIEEME 900 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 +A ++VPL+ + NW E Sbjct: 901 RA----YTMQVPLEADYGWGRNWLE 921 >gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] Length = 920 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 341/983 (34%), Positives = 532/983 (54%), Gaps = 79/983 (8%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 N LFL+D + I+R++YA P ++ K GL +AI GF N L +++ E + Sbjct: 2 NKLFLLDAFALIFRSYYALIRAPRINSK--GLNTSAILGFVNTLHEIITKENPE----YL 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR+E +P YKA R + PE + +P+++ AF IP +E++GFEADD+I Sbjct: 56 GVAFD-AGKTFRHEAFPPYKAQRQEPPEDIALSVPIIKEILHAFHIPILEVEGFEADDVI 114 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGI-PPE 177 T A EG +++ DKD QL+ +Y DI + + +K+GI PE Sbjct: 115 GTLATKAGNEGVETYMLTPDKDYGQLIRKNVFMYRPRHGGGYDIVGEQEIAEKYGINKPE 174 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ L AL GDS DN PG PG+G KTA L+ E+G+++ +L + ++K K RE + Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTAVKLINEFGSIDGLLEHTDQLK-GKMREKVEGAV 233 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E ++S+ L +RTDVPI + LE L L+ + +L LEF L N++ Sbjct: 234 EDIKMSKFLATIRTDVPIELNLEALRLQQPDEQKLSEIFADLEFKTLANKI--------- 284 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +N TE K ++ E D I + NS+ + + E L+ Sbjct: 285 --------LNKTEQKQKSVNVERDLFADIPS-------------NSQVSSENASFESLKT 323 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + Y I N ++ Q+ +T S T + DA ++ + + + + K Sbjct: 324 IKH------EYKLIDNQEEAQRICDFFKTKQILSLDTETTSTDAIEAELVGLCFAVEEHK 377 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + + + + K L + ++ K +E+ LKIG NIKYD VL Sbjct: 378 --------------AFYVAIPNDRKQAL--QYVNIFKSVYEDPSILKIGQNIKYDYEVLK 421 Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS-RKSSIPIDK 532 YG++++G D ML YVL H++ +A+ L+Y +E++ + K + Sbjct: 422 NYGVTLQGKMFDTMLAHYVLQP-ELRHNMDYMAETLLNYKTIHIEELIGAPGKHQKSMRD 480 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 I+ E+ E++++ LQL +L PKL + ++ ++ P+I V++ ME+ G+++D Sbjct: 481 IAPEDAYEYGAEDADITLQLRNVLEPKLKEVAMEALFWDIETPLIPVLADMELNGVRVDT 540 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWK 651 L + ++ + LE +IY+ +GE FN++SPKQ+GDILF KL+ KTKTGQ+ Sbjct: 541 ATLHDTAEIFTERMNRLERHIYEEAGETFNIASPKQVGDILFGKLQIMEKPKKTKTGQYV 600 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L+ + NPI+++IL R L K+ TY ++LP I+KRTQ +HT ++ A T TG Sbjct: 601 TNEEVLQSLRA-KNPIVEDILAHRGLKKLLGTYVEALPKLIHKRTQHIHTSFNQALTATG 659 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP++++ G++IR+ F+ P SADYSQIELRI+AH++ + + F Sbjct: 660 RLSSSDPNLQNIPVRSEDGKEIRKCFVPEPGCLFFSADYSQIELRIMAHLSGDENMIEAF 719 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIH AA+I+ I V+P+ R+ AK NF IIYGI+ + LA ++ I EA Sbjct: 720 REGFDIHAATAAKIWHKQIADVTPEERKKAKQANFGIIYGITTYGLAQRMGIDNKEARML 779 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I+ YF FP + Y+E+ K RQ GY T+FGRR + +INS ++R ER AINAP Sbjct: 780 IEDYFTTFPKVKAYMEQAKEEARQKGYAVTLFGRRRYLPDINSKNGTVRGFAERNAINAP 839 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGS ADI + AMI + + + + +KM+LQ+HDEL F V EE +I++ M+ A Sbjct: 840 IQGSEADIIKIAMIRIWQRFKAENIRSKMILQVHDELNFSVYPEEKERVEKIVLEEMQGA 899 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 C L+VPL + NNW E Sbjct: 900 C----QLKVPLTADAGWGNNWLE 918 >gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] Length = 923 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 344/989 (34%), Positives = 542/989 (54%), Gaps = 88/989 (8%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYRA+YA +P ++ K GL +AI GF N L ++L SH Sbjct: 2 DRLFLLDAYALIYRAYYAFIKSPRINSK--GLNTSAILGFVNTLEEVLNKEH----PSHI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR+E YP+YKA R + PE + +P+++ +A+ IP +E+ GFEADD+I Sbjct: 56 GVAFDPAGPTFRHEAYPEYKAQREETPEAIRTAVPIIKDIIRAYRIPILEVAGFEADDVI 115 Query: 122 ATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIP- 175 T A G +++ DKD QLV+ +Y +K + ++ V +K+ I Sbjct: 116 GTLATQAAAHGNLETYMMTPDKDYGQLVNERVKMYRPKFGDKDFEIMGVKEVTEKFDISS 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ + L GDS DNIPG PG+G KTA+ L+ ++G++EN+L + +K +I Sbjct: 176 PTQVIDILGLMGDSSDNIPGCPGVGGKTASKLVNQFGSIENLLEHTDELKG-----SIKT 230 Query: 236 YAETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 ET R S+ L ++TDVPIT+ LE L ++ + L + LEF L+ R Sbjct: 231 KVETHRDMIAFSKFLATIKTDVPITLDLEALTTKEPDAEALQRLFEDLEFRTLLER---K 287 Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351 + + EP + S F+ +D++ + + Sbjct: 288 FSKKQPSAEPGFF----------------------QGSLFAEFADESPEAS--------- 316 Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411 + LS+Y + Y I +D + + T S T D +K + ++ Sbjct: 317 --KYSNLSKYKKEDFDYQLIETKEDRSRIIDLFVTKDFLSLDTETTGTDPISAKLVGLSF 374 Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471 S K++ +F V QD ++I++ K +E+E LKIG NIKY Sbjct: 375 SV---KENQAFYVPI---------PQDPEE----AQKIVNEFKSVYEDERILKIGQNIKY 418 Query: 472 DKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KS 526 D +VL YGI+++G D M+ Y+L H + +A+ +L+Y +E++ + K+ Sbjct: 419 DLMVLQNYGITLKGEIFDTMIAHYLLQP-ELRHGMDYLAEVYLNYQTIHIEELIGPKGKN 477 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 + + SQV E+A E++++ L+L + PKL E ++ ++ P++ V++ ME Sbjct: 478 QKNMADLPPSQVYEYACEDADITLKLKNVFEPKLKEEGCYDLFREVEMPLMPVLAWMERN 537 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-T 645 G+ ID + LK+ S +K + LEE I+ L+GE FN++SPKQ+G++LF KLK K T Sbjct: 538 GVCIDTEALKETSTLYTKEMNCLEEEIHALAGEPFNIASPKQVGEVLFEKLKISEKPKKT 597 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTGQ+ T+ + LE + +PI++ ILE R L K+ TY D+LP IN T +HT ++ Sbjct: 598 KTGQYVTSEEVLETLRT-RHPIVEKILEHRGLKKLLGTYIDALPKLINPETGHIHTSFNQ 656 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 T TGRL+S PNLQNIP++ + G++IR+AFI P + SADYSQIELRI+AH++ Sbjct: 657 TITTTGRLSSSNPNLQNIPVRNEEGKEIRKAFIPEPGCEFFSADYSQIELRIMAHLSGDP 716 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 + + F DIH AA+++ +E+V+ + R AKT NF IIYGI+ F LA ++ + R Sbjct: 717 HMIEAFREGHDIHAATAAKVYKKPLEEVTREERSKAKTANFGIIYGITVFGLAERMNVSR 776 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 +EA + I YF +P + EY++K+ R+ GY ETI+ R+ + +INS + +R ER Sbjct: 777 AEAKELIDGYFTTYPKVKEYMQKSIETAREKGYTETIYHRKCYLRDINSHNAVVRGYAER 836 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAPIQGSAADI + AMI++++ + + +KM+LQ+HDEL F V EE QI++ Sbjct: 837 NAINAPIQGSAADIIKIAMIAIYRRFQKEHIRSKMILQVHDELNFSVYPEEKERVQQIVI 896 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME+A ++VPL+ + NW E Sbjct: 897 EEMERA----YTMQVPLEADYGWGKNWLE 921 >gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS] gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS] Length = 950 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 358/986 (36%), Positives = 541/986 (54%), Gaps = 92/986 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LFL+DG + +YRAFYA DG+P A+ GF L ++++ R + + AV F Sbjct: 37 LFLLDGMALVYRAFYALQQARMSTRDGVPTGAVFGFATSLLRIIEEYRPD----YLAVAF 92 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D P TFR+E Y YKANRP P+ L+ QL +R +A GIP I + GFEADD+I T Sbjct: 93 DSPEKTFRHEKYKAYKANRPAPPDDLINQLDNIRELIRACGIPLIIMPGFEADDLIGTTA 152 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 E + V I++ DKD+ QLV + K+ E + V +++G PPE+ + Sbjct: 153 RKFEAD-CQVFIVTPDKDMSQLVHDGVRILKPGKKQNEFELLGSREVAEQFGAPPEQFID 211 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L LTGD+ DNIPG GIG KTA+ LL++YG+LE I N + K R +++ + E Sbjct: 212 LLTLTGDTSDNIPGAKGIGPKTASSLLKKYGSLEGIYANIDALTPKTR-QSLEAFREMMP 270 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 L R+LV +RTD+ + + LE L + L + L LE + R+ P Sbjct: 271 LVRELVTIRTDLDLPLTLEALHASKPDPEALFALLAKLELKSIAARL------------P 318 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS--EQTPQKLFLERLQKLS 359 VL I+T S SS + + NS PQ + Sbjct: 319 AVLQIDT--------------------SAASSSENAPAMANSVDPGDPQLI--------- 349 Query: 360 QYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 P S ++++K+ + + LE G + T ++D F ++ I+ S K Sbjct: 350 --PAGEGSEYHLIDSKEAFDKLLTLLENSGGFAVDTETTSLDTFTAELAGISCSV---KP 404 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 +F V L T+ ++ LK EN K G N+KYD LVL + Sbjct: 405 GEAFFVYFGTPGLDAKTT-------------VARLKPLLENPEIPKTGQNLKYDILVLKK 451 Query: 479 YGISMR--GFEDIMLMSYVLDSGRSSHDIASIAQKWLS-----YTRKEILKSRKSSIPID 531 YG+ + GF D ML SYVL+ + H++ +A +L YT E++ + K +I I Sbjct: 452 YGVELAPVGF-DTMLASYVLNP-EARHNLDDMAALYLGRQTTKYT--ELVGTGKQTIGIF 507 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ ++ ++A +++++ L+L L +L +LL V +L+ P++ V++ ME GI I Sbjct: 508 EVEPRKLSDYACQDADIALRLRYSLEEQLEKTPELLEVCRKLEFPLVRVLADMEHKGISI 567 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D L+Q+S +++ L +L E I++ +GE FN+ SPKQLG ILF LK P+ TKTG + Sbjct: 568 DTAHLEQLSIKVTGELATLTERIFEATGETFNIDSPKQLGHILFDVLKLPAKKATKTG-Y 626 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T Q LE++ +P+ ++LE+R L K+KSTY ++LP IN T RVHT ++ + T T Sbjct: 627 STNVQVLEELAM-LHPVASDLLEYRSLQKLKSTYIEALPKMINPLTGRVHTSFNQSITAT 685 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769 GRL+S PNLQNIPI+T+LG++IRRAFI S P L+SADYSQIELRI A ++ L + Sbjct: 686 GRLSSSNPNLQNIPIRTELGKEIRRAFIPSNPGNLLLSADYSQIELRIAAELSGDPMLIE 745 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F N DIH A IF + ++++P MRR AK +NF ++YGI PF L+ +L IP+ EA Sbjct: 746 AFRNHEDIHAATARVIF--DTKEITPDMRRKAKEVNFGVLYGIQPFGLSQRLGIPQKEAK 803 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 + I Y ++PG+ ++ ++ GYV T+ GRR + ++NS S+IR ER +N Sbjct: 804 EIIDTYMAKYPGMFSSLQTIIEEAKKKGYVTTLMGRRRYVPDLNSANSNIRKAAERVTMN 863 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 PIQG+AADI + AM S+ + L+ + + MLLQ+HDEL+FE+P +E +++ +M Sbjct: 864 TPIQGTAADIIKFAMCSISRELKKGEFRSAMLLQVHDELLFEMPPDEEARLREMVERNMI 923 Query: 950 KACLPKINLR-VPLKVNIKVSNNWQE 974 +A K L+ VP++V+ NW E Sbjct: 924 EAA-SKCGLKNVPVEVDTGSGKNWLE 948 >gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] Length = 963 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 347/996 (34%), Positives = 539/996 (54%), Gaps = 57/996 (5%) Query: 1 MQKENH-LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES 56 M+K H LFL+D + IYRA +A P ++ K GL +A+ GF N L ++LQ + Sbjct: 1 MEKPIHKLFLLDAMALIYRAHFAFIKAPRITSK--GLNTSAVFGFTNTLLEVLQKEK--- 55 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116 +H V FD A TFR+ + YKA R PE + +PLV+ + IP +E+ G+E Sbjct: 56 -PTHIGVAFDTAAPTFRHVQFEAYKAQREAQPEDITVAIPLVKRLLRGMCIPILELDGYE 114 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKW 172 ADDII T A +EGF V +++ DKD QLV +Y E + ++ ++ +W Sbjct: 115 ADDIIGTIAKEASREGFEVYMMTPDKDYGQLVEQYIHIYKPAFLGKGAEVLGVQQILDRW 174 Query: 173 GIPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 I ++++ + L GD++DNIPGIPG+G KTA L+QEY +EN++ +A IK K E Sbjct: 175 QIQRIDQVIDILGLMGDAVDNIPGIPGVGEKTAQKLIQEYDTIENLITHAGEIK-GKLGE 233 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-AT 290 I E + A LS++L + VP+ E L + N + LEF L R+ Sbjct: 234 KIRENFDKAVLSKQLATIDCKVPVPFDAEDLTICSPNAELIAELFDELEFKTLKTRILGG 293 Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350 A + P K + +I + T + Q Q + ++ + +L Sbjct: 294 QPGGSAGALSPRPASAQAPARKNAKGQLDIFGNPTEEIGQ------QPAAVSGDLADGEL 347 Query: 351 FLERLQ---KLSQYPINNDSYT-KIVNTKDIQQWVQKLETIGSA-SFKIITDTMDAFHSK 405 + + S+ I+N + V+T ++ + ++ A F T ++D ++ Sbjct: 348 TEDTSEIRIPTSKRTIDNTFHRYHTVDTPELMTSLAHYLSLQDAFCFDTETTSLDTTDAE 407 Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465 + ++ S L E +I + Q +EI+ Y + FENE+ KI Sbjct: 408 LVGLSFSYL--------AGEAFYIPVPADRQQ--------AEEIVGYFRAVFENENIEKI 451 Query: 466 GHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL--- 521 G NIKYD LVL YGI + G D ML Y+L+ + H + +A +L+Y I Sbjct: 452 GQNIKYDMLVLKNYGIEVHGKLSDTMLAHYLLEPDKR-HGMDILAASYLNYEPVSITSLI 510 Query: 522 -KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 K + ++ ++ ++A E++++ QL + +L ++ ++ P+ V+ Sbjct: 511 GKKGGKQGNMRDVAIPEITQYAGEDADITFQLHSIFSRELPKVNAAKLFNEVEMPLTKVL 570 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF- 639 + ME TG+++D + LK++SA + +L E IY+ +G+ FN+SSPKQLG++LF K+K Sbjct: 571 ASMENTGVRLDINALKEMSAVLESDLRQTESEIYEAAGQSFNISSPKQLGEVLFEKMKLI 630 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 KTKTGQ+ T + L + ++ I + IL++R+L K+KSTY D+LP ++ RT R+ Sbjct: 631 EKPKKTKTGQYATGEEILSDLEA-NHLIARKILDYRELQKLKSTYVDALPTMVSSRTGRI 689 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRIL 758 HT Y+ A TGRL+S PNLQNIPI+T G++IR+AF+ +++SADYSQIELRI+ Sbjct: 690 HTSYNQAVAATGRLSSTNPNLQNIPIRTPRGREIRKAFVPDSADFQILSADYSQIELRIM 749 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 A + + + F DIH A+++F V +E+V+ MRR +K +NF IIYGIS F LA Sbjct: 750 AAFSGDASMTEAFNQGRDIHATTASKVFQVPLEEVTSDMRRKSKMVNFGIIYGISAFGLA 809 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 +L IPR EA++ I+ YF FP + Y++K N R+ YVETI GRR + +INS + Sbjct: 810 QRLGIPRGEASEIIRAYFEEFPAVKGYMDKVVNDAREREYVETILGRRRYLPDINSRNQT 869 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 R ER AINAPIQGSAAD+ + AMI++H + KL ++M+LQ+HDELVF+ EI Sbjct: 870 NRGYAERNAINAPIQGSAADMIKVAMINIHDFMAKEKLKSRMILQVHDELVFDAHYSEID 929 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M A I + V ++ I V NW E Sbjct: 930 LLKERVDELMRNA----IPMAVRMETGIGVGANWLE 961 >gi|332519119|ref|ZP_08395586.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4] gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4] Length = 953 Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust. Identities = 349/1008 (34%), Positives = 544/1008 (53%), Gaps = 91/1008 (9%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M +FLVD + I+R +YA P ++ K G +AI GF N L +++ R Sbjct: 1 MSDNKRVFLVDAYALIFRGYYAFIKNPRINSK--GQDTSAIMGFMNSLLDVIKRER---- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 + AV FD T R E++ +YKANR + PE + +P + +A IP + +GFEA Sbjct: 55 PNLLAVCFDKGGSTDRVEMFEEYKANRDETPEGIKTAIPYICQILEAMHIPIMVKEGFEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-- 175 DD+I T AEKEG+ +++ DKD QLVS +Y V + WGIP Sbjct: 115 DDVIGTLAKQAEKEGYQTFMVTPDKDFAQLVSENIFMYRPV------FGGGYETWGIPEV 168 Query: 176 --------PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 P +++ + GD+ DNIPG+PG+G KTA L YG++EN+ N +K Sbjct: 169 QKKFEVTDPLQVIDYLGMMGDASDNIPGLPGVGDKTAKKFLAAYGSMENLFANTHELK-G 227 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 K +E I E LS+KL + DVP+ + L+ + ++ + LEF +L + Sbjct: 228 KMKEKIEANQELGLLSKKLATIMLDVPVEFHAKDFELDAPDIDKVKEIFQELEFRRLTDN 287 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS-----QFSSLS------- 335 T+ D+ I N+T N E + +T TS QF+ Sbjct: 288 FIKTFAEDSPAIG------NSTSNTS---EKPTSKTSTAPTSNAGAGQFNLFGGDPNETK 338 Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDS--YTKIVNTKDIQQWVQKLETIGSASFK 393 D TS I++ ++ + N S Y + + +++ L S F Sbjct: 339 DGTSNIDT-------------AFTRRTVANTSHFYQSVAPGMATKLFIKNLMNQTSVCFD 385 Query: 394 IITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453 T ++ ++ + IA S ++ F Q++ + I+ L Sbjct: 386 TETTGLNPLTAELVGIAFS---------WETGKGFYLPFPEDKQEA-------QAIIEAL 429 Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKW 512 + FFE E+ KIG N+KYD VL +Y + ++G D ML Y+++ H++ +A+ + Sbjct: 430 RCFFEAENIQKIGQNLKYDIKVLAKYNVEVKGPLFDTMLAHYLINPDMR-HNMDVLAETY 488 Query: 513 LSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 L+YT I K K+ + + + + E+A+E++++ LQL +L + Sbjct: 489 LNYTPVSITELIGKKGKNQLSMRDVPLDKQTEYAVEDADITLQLKEHFEKELGEANTQKL 548 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 ++ ++ P++ V++ ME+ GI +D+D L+ +S ++++++ +L IYD++GE+FN++SPKQ Sbjct: 549 FDDIEVPLLRVLAAMELEGINLDKDFLQSLSNDLNRDIEALVTKIYDVAGEEFNIASPKQ 608 Query: 629 LGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 LG ILF KLK KTKTGQ+KT +D+ + D+ II+NILE+R L+K+KSTY D+ Sbjct: 609 LGIILFEKLKLVDKPKKTKTGQYKT-GEDILSVLAKDHEIIRNILEYRGLAKLKSTYVDA 667 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLI 746 LP + + T RVHT Y TGRL+S PNLQNIPI+T+ G+++R+AFI L+ Sbjct: 668 LPLQVEESTGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFIPRNDDYTLL 727 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 +ADYSQIELRI+A ++K + + F+N DIH A+++FGV IE+V+ R +AKT+NF Sbjct: 728 AADYSQIELRIIAALSKEETMIEAFKNGEDIHASTASKVFGVPIEEVTRAQRSNAKTVNF 787 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 IIYG+S F L+ Q + R EA + I Y+ +P + +Y+ + +F R NGYV+TI RR Sbjct: 788 GIIYGVSAFGLSNQTDLSRGEAKELIDTYYETYPKLKKYMSEQVHFARDNGYVKTILDRR 847 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + +INS + +R ER A+NAPIQGSAADI + AMI+++ LE TKMLLQ+HD Sbjct: 848 RYLKDINSRNAVVRGAAERNAVNAPIQGSAADIIKIAMINIYNKLEAGNYKTKMLLQVHD 907 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ELVF+V + E+ + +I ME A + VPL V + NW E Sbjct: 908 ELVFDVYKPELEKMTTLIKTEMENA----FKMEVPLDVEVDTGLNWLE 951 >gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] Length = 930 Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust. Identities = 331/987 (33%), Positives = 532/987 (53%), Gaps = 81/987 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+DG + YRA +A +P+ + K G +AI GF L +L+++ SH A+ Sbjct: 4 LFLLDGMALAYRAHFALIRSPIYTSK--GFNTSAIFGFTGTLIELIKSGNP----SHLAI 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD A T R+ I+P+YKANR ++PE L +P + +AF IP +++ G+EADDII T Sbjct: 58 VFDTSAPTERHRIHPEYKANREEMPEDLRSAMPHLDRIAEAFDIPVLKLDGYEADDIIGT 117 Query: 124 YTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP-E 177 + AE EGF + +++ DKD QLV+ +Y ++ E + ++ V KWGI + Sbjct: 118 LAHRAEAEGFDEIYMVTPDKDFGQLVTERIKMYRPGRKGDGAEILGVDEVKAKWGIARVD 177 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ + L GDS+DNIPG+PGIG KTA LL +Y +E +L + +K K++E + + A Sbjct: 178 QVIDMLGLCGDSVDNIPGVPGIGPKTAEKLLAKYDTVEGLLDHVDELK-GKQQEKVRDNA 236 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDA 296 + AR+S+ L ++ DVPI + L L +++ EF L R+ + Sbjct: 237 DQARMSKLLATIQKDVPIAVEWSALELHAPEQSKIVPLFTEFEFRTLGKRIFGNDFSVQE 296 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 A + V++ S D+ + S +TP L+ + Sbjct: 297 AATDLVLM----------------------------SEDDEQAAAASSETPAGGQLDLIP 328 Query: 357 KLSQYPINNDSYTKIV--NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 ++ + + ++T + T+ +Q+ +L GS +F T ++ ++ Sbjct: 329 AITFKKLADVTHTYAIADTTEQLQRLCTELREAGSFAFDSETTALNPRQAE--------- 379 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 + LS T S + E L L+ F + KIGHN+K+D Sbjct: 380 -------------LVGLSFATKAHSGWWVPASSEALDALRPLFADNSITKIGHNLKFDLA 426 Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 +L + G ++++ L H++ ++A+ +L Y+ E++ K P+D Sbjct: 427 ILAAQSCPVDGPCYDTMLAHALIEPEQRHNLDTLAEDYLRYSTIRFSELMPDAKKGSPLD 486 Query: 532 --KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 + + ++A E+++V LQLW +PKL ++ ++ P++ V+ ME GI+ Sbjct: 487 YSSVDPQALADYATEDADVTLQLWECFKPKLEESGQASIFYEIETPLLPVLVAMESEGIR 546 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTG 648 + + L++ + + +L++ +Y +G +FNL+SPKQLG++LF +LK KTKTG Sbjct: 547 LCTETLEETGRVLEGQIATLKDAVYAAAGREFNLNSPKQLGEVLFNELKLVDKPKKTKTG 606 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q+ T Q L + +PI+ ++LE+RQLSK+KSTY D+LPN ++ + RVHT Y T Sbjct: 607 QFATNEQVLSSL-APKHPIVADLLEYRQLSKLKSTYIDALPNAVDPVSGRVHTHYGQVQT 665 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP+++ G++IR+AF+ L++ADYSQIELRILA + L Sbjct: 666 ATGRLSSNDPNLQNIPVRSAQGREIRKAFVPREGWTLLAADYSQIELRILAALTADEGLL 725 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSE 827 F DIH AA+IF V+ + VS R AK +NF I YGIS F LA +L + R+E Sbjct: 726 TAFREGRDIHTATAAKIFEVDADTVSRDQRSTAKMVNFGIPYGISAFGLAQRLGTVSRTE 785 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A + I YF +FPGI Y++ + R GYV T+ GRR + +INS +IR ER A Sbjct: 786 AQNIIDNYFAQFPGIPGYMQAQQESARAKGYVATVCGRRRYLRDINSGNGTIRAAAERNA 845 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 IN PIQG+AAD+ + AMI VH ++ D L ++MLLQ+HDEL+F++ E + Q++ Sbjct: 846 INMPIQGTAADMIKLAMIRVHHAIIDAGLKSRMLLQVHDELIFDLAPGEESALRQLVTGG 905 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ A + L P+++ I NW E Sbjct: 906 MQDA----LQLACPIEIEIGTGMNWLE 928 >gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] Length = 971 Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust. Identities = 348/1006 (34%), Positives = 554/1006 (55%), Gaps = 74/1006 (7%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYRA+YA +P ++ K G +A+ GF N L ++L K+ +H Sbjct: 2 DKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAVLGFVNTLEEVL----KKENPTHI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR+E Y YKA R + PE++ +P+++ +A+ IP +E+ G+EADD+I Sbjct: 56 GVAFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVI 115 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177 T A K G +++ DKD QLV +Y T E + IE V K+ I P Sbjct: 116 GTLATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPA 175 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ + L GDS DNIPG PG+G KTA L+ +YG++EN+L +++ +K + + Sbjct: 176 QVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGALKTK-----V 230 Query: 238 ETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288 ET R S+ L ++ DVPI + ++ L E+ N L + +EF LI+RV Sbjct: 231 ETNRKMIEFSKFLATIKIDVPIALNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRDK 290 Query: 289 ----ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344 A TY DA +P G + + + + S F + S Sbjct: 291 KSAFAGTY-PDATGNDPQ----GRNRTPGGSARQGNTPNGSGQLSLFGEPASNGESPASP 345 Query: 345 QTPQ-KLFLE------RLQKLSQYP-INNDSYT-KIVNTKDIQ-QWVQKLETIGSASFKI 394 +PQ LF E +K S ++N Y ++V+T++ + + +Q L T S Sbjct: 346 SSPQGNLFAEFTDGGTESEKYSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDT 405 Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454 T D ++ + ++ S + + ++ + ++ ++I++ + Sbjct: 406 ETTGTDPITAELVGMSFSYAEN--------QAFYVPVPADRAE--------AQKIVNEFR 449 Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL 513 FE E LK+G NIKYD LVL YG +RG D M+ YVL H++ +A+ +L Sbjct: 450 PAFEKEGVLKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYL 508 Query: 514 SYTR---KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569 Y +E++ + K + +S + ++A E+++V L+L +L +L ++ Sbjct: 509 HYQTIHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLF 568 Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629 ++ P++ V++ ME G+++D + LKQ S + + +EE ++ L+G FN++SPKQ+ Sbjct: 569 YEIEMPLVPVLTYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQV 628 Query: 630 GDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 G++LF KL+ AK TKTGQ+ T+ + LE + G + I+ ILE R L K+ TY D+L Sbjct: 629 GEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDAL 687 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748 P INK T ++HT ++ T TGRL+S PNLQNIPI+ + G++IR+AFI + SA Sbjct: 688 PLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSA 747 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELRI+AH++ T + + F+ DIH AA+++ ++I+KV+ + R AKT NF I Sbjct: 748 DYSQIELRIMAHLSGDTNMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGI 807 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 IYGIS F LA ++ + R EA + I YF +P I EY++K+ + R GY+ETIFGR+ + Sbjct: 808 IYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFGRKRY 867 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS S +R ER AINAPIQGSAADI + AM+ +++ + + +KM+LQ+HDEL Sbjct: 868 LPDINSRNSVVRGYAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDEL 927 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 F V EE +I++ ME A ++VPL+ + +NW E Sbjct: 928 NFSVLPEEKEKVQKIVIEEMENA----YRMQVPLRADCGCGSNWLE 969 >gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13] gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13] Length = 901 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 344/975 (35%), Positives = 529/975 (54%), Gaps = 86/975 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DGSS++YRA++A P L R + P I G NML K + E + +FD Sbjct: 4 ILLIDGSSYLYRAYHALPDL-RNQNNEPSGVIYGVLNMLKKTM----AEYTSDFVVCVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFRN+IY DYKANRP +PE L Q+ ++ A A GI + I+G EADD+I T Sbjct: 59 AKGKTFRNDIYSDYKANRPHMPEDLAVQIEPLKKAIHALGISMLSIEGVEADDVIGTLAE 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A K+ V I + DKDL QLV+ L +T+ E +D E V+KK+G+PPE++V L Sbjct: 119 DAVKQDMDVIISTGDKDLAQLVNDNITLVNTMTNEVLDAEGVLKKFGVPPEQIVDYLTLI 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--KRRENILEYAETARLSR 244 GD DNIPG+ +G KTA L E+G+L+NI+ N+ +I ++ +++ T + Sbjct: 179 GDKADNIPGVDKVGPKTAVKWLNEFGDLDNIVANSDQISGAVGAHLKSAIDWLPTGK--- 235 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 L+ ++ DV + + ++ + + + L+ + F+ + + D D N Sbjct: 236 SLITIKKDVEMNVLFDNFLKSEQDKKELLKIYQHYNFSSWLKKEFEDTDNDLTN------ 289 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 T N + E + D +I +N+E Sbjct: 290 ----TSNSEVQAEFNKNEDYSI--------------VNAES------------------- 312 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 D+ W+ ++E TD+++ ++ + ++++ K Sbjct: 313 -----------DLDYWITQIEQNNLCILDTETDSLNFMEARLVGVSLAYQAGK------- 354 Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 +I L QD + +L+ +K ENE+ K+G NIKYD VL Y ++ + Sbjct: 355 -ACYIPLQ---HQDMSIPQLPLNLVLNKIKSITENENITKVGQNIKYDMHVLKNYDVTFK 410 Query: 485 G-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540 G ED M+MSYV+DS SH + +A+K+L + + + ++ + D++S Sbjct: 411 GPIEDTMIMSYVIDS-TESHGMDKLAKKYLDHDCISFESVVGKGVKQLTFDQVSIDDAYL 469 Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E+++V LQL+ L K+I + KL ++Y+ ++ P + + +E G+ I + +L + Sbjct: 470 YASEDADVTLQLYEHLNKKIIADSKLNYIYKEIEIPSLLTLFCIERNGVLISEKILHDQN 529 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 ++ +L+LE Y ++ + FNLSSPKQL +ILF K+K KT TG T+ LE+ Sbjct: 530 QDLGLKILNLENEAYQIAEQPFNLSSPKQLREILFDKMKIIPTKKTPTGTPSTSEDVLEE 589 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + D+ + K ILE R LSK+K+TY D LP IN T+R+HT Y+ A +TGRLAS EPN Sbjct: 590 L-SHDHALPKVILEHRSLSKLKNTYTDKLPKMINLNTKRIHTSYNQAVAITGRLASSEPN 648 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPIKT G+K+R AFI+ +++S DYSQIELRI+AH++K L F + DIHR Sbjct: 649 LQNIPIKTKEGRKVREAFIANTDSQIVSCDYSQIELRIMAHLSKDPGLLDAFNQNEDIHR 708 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 A+ IF N VS + RR AK INF +IYG+S F L+ L I R+ A ++I +YF ++ Sbjct: 709 STASAIFNTNDASVSSEQRRFAKVINFGLIYGMSAFGLSQTLNIDRNSAKNFIDQYFEKY 768 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 PG+ Y+++ K ++ GYVET+FGRR+ INS R ERAAINAP+QG+AAD+ Sbjct: 769 PGVKNYMDQGKLVAKEQGYVETVFGRRLWVPLINSSNGIQRAAAERAAINAPMQGTAADL 828 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + AM +V + + D+KL T M++Q+HDELV EVP E+ II + K L Sbjct: 829 IKMAMNNVQQWIGDNKLETLMIMQVHDELVLEVPNAEL----DIIKTEIPKIMSNVATLD 884 Query: 960 VPLKVNIKVSNNWQE 974 VPL ++ NW+E Sbjct: 885 VPLIADLGSGINWEE 899 >gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] Length = 936 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 346/984 (35%), Positives = 548/984 (55%), Gaps = 74/984 (7%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYRA +A P ++ K GL +A GF N L +++ + SH V Sbjct: 9 LFLLDALALIYRAHFAFIKNPRITSK--GLNTSATLGFTNTLVEVITKEK----PSHIIV 62 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A T R+ +P YK +RP PE + +P V+ +AF IP + ++G+EADDII T Sbjct: 63 AFDTGAPTHRHTAFPAYKEHRPSQPEDITVAIPYVKKILKAFRIPVLLLEGYEADDIIGT 122 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPP-EK 178 A +GF V +++ DKD QLV +Y +D + V++KWGI ++ Sbjct: 123 LARQAAVQGFEVYMMTPDKDFAQLVDDHIYIYKPAFMGNGVAILDRQAVLEKWGISNVDQ 182 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + L AL GD++DNIPGIP IG KTA L+Q++G LEN+L NA ++ K +EN+++YA+ Sbjct: 183 IRDLLALQGDAVDNIPGIPSIGIKTAQKLIQQFGTLENLLANADQLT-GKLQENVVKYAQ 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 LS++L + T+VPI E + + L + LEF L R+ + Sbjct: 242 QGILSKELATIHTEVPIQFDAEESRYQGPDPVALKEIFQELEFNSLTRRLLGEDNY---- 297 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 NT G T F+ T++ S ++L+ Sbjct: 298 --------NTKRTPG----------TQANLFDFTPTDQPTAETAS------VYLDPAPFR 333 Query: 359 SQYPINNDSYTKIVNTKDIQQ-WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + Y + Y +++T ++Q + L+ + F T ++D + ++ + I+ + Sbjct: 334 NIYTTKHQYY--LIDTPSLRQNLINYLKLQDTFCFDTETTSLDPYQAQLVGISFA----- 386 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + E ++ + + + I+ + E+ K+G N+KYD L+L Sbjct: 387 ---YYPGEAYYVPIP--------AERKAAQAIIEEFRPLLESTTQCKVGQNLKYDNLILR 435 Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 YGI + D M+ Y++ + H++ +IA+ +L+Y + ++ SRKS+ ++ Sbjct: 436 TYGIEVAPPIFDTMVAHYLVAPDKP-HNMNAIAESYLNYAPIPIEALIGSRKSTQKSMRM 494 Query: 534 SDSQ-VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 D + V+E+A E++++ LQL LL + E L ++ ++ P++ V++ ME G+QID Sbjct: 495 VDVELVKEYACEDADITLQLKRLLELNIKQENLSKLFYEIEIPLVQVLTAMEYQGVQIDT 554 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWK 651 +L+++S + L +LE+ I+ L+G FN+SSPKQLG+ILF KLK KTK+GQ+ Sbjct: 555 QVLREISVTLGTELAALEKEIHRLAGHAFNISSPKQLGEILFDKLKIAGNNKKTKSGQYA 614 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T L + D+PI NIL++R+L K+KSTY D+L + I+ +VHT Y+ TG Sbjct: 615 TGELVLADL-TKDHPIAANILDYRELQKLKSTYVDALIDLISPFDGKVHTSYNQTVVTTG 673 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S PNLQNIPI+T+ G+ IR+AF+ S P L+SADYSQIELRI+A ++ + + Sbjct: 674 RLSSTNPNLQNIPIRTEKGRAIRKAFVPSKPDHVLLSADYSQIELRIMASFSQDEHMIEA 733 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+ DIH A+++F V +E+V MRR AKT NF IIYGIS F LA +L I RSEA Sbjct: 734 FKAGKDIHTATASKLFKVPLEQVDESMRRQAKTANFGIIYGISGFGLAQRLGISRSEAIA 793 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 I+ YF F I Y+++ R+ GYV T+ GR+ + +INS S++R +ER AIN Sbjct: 794 TIQAYFQEFHAIKAYMDRVIGQAREQGYVTTLMGRKRYLRDINSRNSTLRGFDERNAINT 853 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQG+AA++ + AM+ +++ L+ KL +K++LQ+HDELVF+VP+ EI + + + M K Sbjct: 854 PIQGTAAEMIKLAMVHIYEWLQKEKLQSKLILQVHDELVFDVPQHEIEIMREHVAYFM-K 912 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 LP VP++V I + NW+E Sbjct: 913 NSLPLAG--VPVEVQIGLGKNWEE 934 >gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] Length = 971 Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust. Identities = 343/1001 (34%), Positives = 552/1001 (55%), Gaps = 64/1001 (6%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYRA+YA +P ++ K G +A+ GF N L ++L K+ +H Sbjct: 2 DKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAVLGFVNTLEEVL----KKENPTHI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR+E Y YKA R + PE++ +P+++ +A+ IP +E+ G+EADD+I Sbjct: 56 GVAFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVI 115 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177 T A K G +++ DKD QLV +Y T E + IE + K+ I P Sbjct: 116 GTLATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEIKAKFDIQSPA 175 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILE 235 +++ + L GDS DNIPG PG+G KTA L+ +YG++EN+L +++ +K K + E E Sbjct: 176 QVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGALKAKVETNRE 235 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV------- 288 E S+ L ++ DVPIT+ ++ L E+ N L + +EF LI+RV Sbjct: 236 MIE---FSKFLATIKIDVPITLNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRNKKS 292 Query: 289 --ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346 A TY N L +G A + + D + + S F + S + Sbjct: 293 AFAGTYTDATGND----LQGRNRTPEGSARQGNMP-DGSEQLSLFGEPASNGKSPASPSS 347 Query: 347 PQ-KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405 PQ LF E + ++ ++ Y+ + +++ Q ++T + Sbjct: 348 PQGNLFAEFTDRGTE----SEKYSNLACLDNLKYDYQLIDT---------EEKRSELLQN 394 Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFFEN 459 + I +LD + + + + +S +++ T ++I++ + FE Sbjct: 395 LLTKEIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEK 454 Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR- 517 E LK+G NIKYD LVL YG +RG D M+ YVL H++ +A+ +L Y Sbjct: 455 EGALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTI 513 Query: 518 --KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574 +E++ + K + +S + ++A E+++V L+L +L +L ++ ++ Sbjct: 514 HIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEM 573 Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P++ V++ +E G+++D + LKQ S + + +EE ++ L+G FN++SPKQ+G++LF Sbjct: 574 PLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGEVLF 633 Query: 635 TKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 KL+ AK TKTGQ+ T+ + LE + G + I+ ILE R L K+ TY D+LP IN Sbjct: 634 DKLRIVEKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLIN 692 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753 K T ++HT ++ T TGRL+S PNLQNIPI+ + G++IR+AFI + SADYSQI Sbjct: 693 KETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQI 752 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELRI+AH++ + + F+ DIH AA+++ ++I+KV+ + R AKT NF IIYGIS Sbjct: 753 ELRIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGIS 812 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 F LA ++ + R EA + I YF +P I EY++K+ + R+ GY+ETIFGR+ + +IN Sbjct: 813 VFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDIN 872 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S S +R ER AINAPIQGSAADI + AM+ +++ + + +KM+LQ+HDEL F V Sbjct: 873 SRNSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVL 932 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EE +I++ ME A +++VPL+ + +NW E Sbjct: 933 PEEKEKVQKIVIEEMENA----YHMQVPLRADCGWGSNWLE 969 >gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] Length = 971 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 348/1006 (34%), Positives = 554/1006 (55%), Gaps = 74/1006 (7%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYRA+YA +P ++ K G +A+ GF N L ++L K+ +H Sbjct: 2 DKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAVLGFVNTLEEVL----KKENPTHI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR+E Y YKA R + PE++ +P+++ +A+ IP +E+ G+EADD+I Sbjct: 56 GVAFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVI 115 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177 T A K G +++ DKD QLV +Y T E + IE V K+ I P Sbjct: 116 GTLATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPA 175 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ + L GDS DNIPG PG+G KTA L+ +YG++EN+L +++ +K + + Sbjct: 176 QVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGALKTK-----V 230 Query: 238 ETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288 ET R S+ L ++ DVPI + ++ L E+ N L + +EF LI+RV Sbjct: 231 ETNRKMIEFSKFLATIKIDVPIALNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRDK 290 Query: 289 ----ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344 A TY DA +P G + + + + S F + S Sbjct: 291 KSAFAGTY-TDATGNDPQ----GRNRTPGGSARQGNTPNGSGQLSLFGEPASNGESPASP 345 Query: 345 QTPQ-KLFLE------RLQKLSQYP-INNDSYT-KIVNTKDIQ-QWVQKLETIGSASFKI 394 +PQ LF E +K S ++N Y ++V+T++ + + +Q L T S Sbjct: 346 SSPQGNLFAEFTDGGTESEKYSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDT 405 Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454 T D ++ + ++ S + + ++ + ++ ++I++ + Sbjct: 406 ETTGTDPITAELVGMSFSYAEN--------QAFYVPVPADRAE--------AQKIVNEFR 449 Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL 513 FE E LK+G NIKYD LVL YG +RG D M+ YVL H++ +A+ +L Sbjct: 450 PAFEKEGVLKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYL 508 Query: 514 SYTR---KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569 Y +E++ + K + +S + ++A E+++V L+L +L +L ++ Sbjct: 509 HYQTIHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLF 568 Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629 ++ P++ V++ ME G+++D + LKQ S + + +EE ++ L+G FN++SPKQ+ Sbjct: 569 YEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQV 628 Query: 630 GDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 G++LF KL+ AK TKTGQ+ T+ + LE + G + I+ ILE R L K+ TY D+L Sbjct: 629 GEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDAL 687 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748 P INK T ++HT ++ T TGRL+S PNLQNIPI+ + G++IR+AFI + SA Sbjct: 688 PLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSA 747 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELRI+AH++ T + + F+ DIH AA+++ ++I+KV+ + R AKT NF I Sbjct: 748 DYSQIELRIMAHLSGDTNMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGI 807 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 IYGIS F LA ++ + R EA + I YF +P I EY++K+ + R GY+ETIFGR+ + Sbjct: 808 IYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFGRKRY 867 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS S +R ER AINAPIQGSAADI + AM+ +++ + + +KM+LQ+HDEL Sbjct: 868 LPDINSRNSVVRGYAERNAINAPIQGSAADIIKVAMVRIYQRFQSESIKSKMILQVHDEL 927 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 F V EE +I++ ME A ++VPL+ + +NW E Sbjct: 928 NFSVLPEEKEKVQKIVIEEMENA----YRMQVPLRADCGWGSNWLE 969 >gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4] gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4] Length = 949 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 350/985 (35%), Positives = 548/985 (55%), Gaps = 58/985 (5%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFLVD + IYRA+YA P ++ K GL +AI GF N L +L+ + +H AV Sbjct: 4 LFLVDAYAIIYRAYYAFIRNPRVNSK--GLNTSAIFGFVNTLEDVLKREK----PTHIAV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E Y YKA R PE + +P+++ +A+ IPA+EI G+EADD+I T Sbjct: 58 AFDPKGKTFRHEAYEQYKAQREATPEDIRLAVPIIKNLIKAYNIPALEIPGYEADDVIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGIPP-EKM 179 AE+ GF V +++ DKD QLVS +Y T E + + V K+ + E++ Sbjct: 118 MAKKAEQAGFEVFMLTPDKDYGQLVSDHIFMYRPKHTGGFETMGPDEVKAKYDLDSHEQV 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L L GD+ DNIPG PG+G KTA LL+E+G+++ +L +K + I E E Sbjct: 178 IDLLGLMGDASDNIPGCPGVGEKTAVKLLKEFGSIDTLLSRTGELK-GALKTKIEENKEQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 SR L ++ DVPI + L + N L + LEF + ++AT + + Sbjct: 237 IIFSRFLATIKVDVPIDFDEKSLEIVPRNETELRALFDELEFRTMSAKLATPFSSFPPDQ 296 Query: 300 E-PVVLDINTTENKGIAIETEI---DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 P + + +++ E D T K S + +Q +++ ++ L Sbjct: 297 PLPSIRQVKPKPAGQMSLFDEAESNDVKPTEKQSDAAPADEQQVVVSTSG------MKGL 350 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + + + D+ K N Q ++QK S F T +D F S + ++ + Sbjct: 351 ENIPHKYVLIDTKVKRSNLIS-QLFIQK-----SVCFDTETTGLDMFTSDLVGMSFCFAE 404 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 E ++ L +D T +KE+L K FFEN+ KIG N+K+D L+ Sbjct: 405 G--------EAYYVSLP----EDKTE----SKEVLREFKAFFENDRIEKIGQNMKFDLLM 448 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPI 530 L +YGI ++G D M+ Y++ H + +A+ +L+Y ++++ ++ K+ I Sbjct: 449 LWQYGIELKGKLFDTMIAHYLVQP-ELRHGMDYLAEIYLNYRTIHFEDLVGAKGKNQADI 507 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 + +++ ++A E+++V +L +L +L + L +++ ++ P++ V++ ME TG++I Sbjct: 508 RTVDINKLCDYAAEDADVTFRLKQILEKELKADALENLFYEIEMPLMQVLATMEHTGVRI 567 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQ 649 D + L+Q S ++ +L LE+ I+ L+G +FN+SSP Q+G+ILF +LK AK TKTGQ Sbjct: 568 DSEALRQSSVILTDEMLKLEKEIHQLAGYEFNVSSPMQVGEILFDRLKLDDKAKKTKTGQ 627 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T+ LE++ +PII IL++R L K+ STY D+LP I+ T +VHT Y+ Sbjct: 628 YSTSEDILEKLQS-KHPIIGKILDYRGLKKLLSTYIDALPQLISPITGKVHTSYNQTVAA 686 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S PNLQNIPI+ G++IR+AFI SADYSQIELRI+AH++ + + Sbjct: 687 TGRLSSTNPNLQNIPIRDAQGKEIRKAFIPDADCLFFSADYSQIELRIMAHLSGDKNMLE 746 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F + DIH AA+I+ + +E+V+ MRR AKT NF IIYGIS F L+ +L IPR+EA Sbjct: 747 AFNSGHDIHTATAAKIYKIPLEEVTSDMRRKAKTANFGIIYGISVFGLSDRLSIPRAEAK 806 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 + I+ YF +P + +Y++ ++ GYVET+ GR+ +INS S +R ER AIN Sbjct: 807 ELIEGYFATYPDVKKYMDNAIQKAKEMGYVETLLGRKRFLPDINSQNSIVRGFAERNAIN 866 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 APIQG+AADI + AM+ + LE+ L KM +Q+HDEL F VP+ E+ + ++ ME Sbjct: 867 APIQGTAADIIKIAMVRIQNRLENESLQAKMTMQVHDELNFTVPKNELEALQKAVIEEME 926 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A I L+VPL + V NW E Sbjct: 927 NA----IKLQVPLIADCGVGANWLE 947 >gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12] Length = 964 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 353/990 (35%), Positives = 545/990 (55%), Gaps = 77/990 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + + LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 30 MNQNSKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 83 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 84 PTHIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEA 143 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG 173 DD+I T A K+G +++ DKD QLV+ +Y +K + IE V K+ Sbjct: 144 DDVIGTLATEAGKQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGIEQVKAKFD 203 Query: 174 I-PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 I P +++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + Sbjct: 204 IQSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK- 262 Query: 233 ILEYAETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 ET R S+ L ++ DVPI + + L+ E + L + LEF L+ R+ Sbjct: 263 ----VETNREMIIFSKFLATIKIDVPIQLDMNSLVREQADEEALRKIFEELEFRTLMERI 318 Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348 + +++ + + EN + I+ + F + T +E+ + Sbjct: 319 ---FKKESSPSPSPAGPLFSQEN------------SPIQGNLFEEFTPDTP---TEE--K 358 Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408 K LE L L+ Y I Q+ ++KL T + T D ++ + Sbjct: 359 KSNLESLNSLTY------DYQLIDTESKRQEIIKKLLTSEILALDTETTGTDPMDAELVG 412 Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468 ++ S + + +I + G+ TK I+ + F+N+ LK+G N Sbjct: 413 MSFSIAEN--------QAFYIPVPA-------GREEATK-IVREFESVFKNDKSLKVGQN 456 Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524 IKYD LVL YGI +RG D M+ YVL H++ +A+ +L Y +E++ R Sbjct: 457 IKYDMLVLQNYGIEIRGRLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELIGPR 515 Query: 525 -KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 K + +S V +A E+++V L+L +L +L ++ ++ P++ V+ + Sbjct: 516 GKGQKNMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEIEMPLVPVLVNI 575 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E G+++D + LKQ S + L S+E+ IY+L+GE+FN++SPKQ+G+ILF KLK A Sbjct: 576 ESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLAGEEFNIASPKQVGEILFDKLKIVEKA 635 Query: 644 K-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 K TKTGQ+ T+ + LE + + +I ILE+R L K+ STY D+LP IN RT R+HT Sbjct: 636 KKTKTGQYVTSEEVLESLR-NKHDVIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTS 694 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 ++ T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIELRI+AH++ Sbjct: 695 FNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLS 754 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 K + F + DIH AA+I+ V+I++V+ MRR AKT NF IIYGIS F LA ++ Sbjct: 755 KDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMN 814 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R EA + I YF +P + Y++K+ R++GYVETIF R+ +INS + +R Sbjct: 815 VDRKEAKELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGY 874 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAPIQGSAADI + AM +++ + L KM+LQ+HDEL F VP +E Q Sbjct: 875 AERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKEKEIVEQ 934 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ MEKA + VPLK + NW Sbjct: 935 VVIEEMEKAY----RMHVPLKADCGWGTNW 960 >gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1] gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1] Length = 938 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 334/986 (33%), Positives = 543/986 (55%), Gaps = 75/986 (7%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L+L+DG + YRAF+A + + G P + GF ++L +LL+ + E + AV Sbjct: 5 LYLIDGHALAYRAFFALTTSGMRLSTASGEPTAGVYGFASVLLRLLEQDKPE----YLAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD +FR++IY +YKA R K+P+ L Q+ +R FG P +E+ G+EADDIIA+ Sbjct: 61 AFDG-GYSFRDQIYSEYKATRAKMPDDLRMQMERIRELVDVFGFPRLELNGYEADDIIAS 119 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTC--LYDTVKEEKIDI---EHVIKKWGIPPEK 178 + A K+GF V II+ D+DL+QLV L + E D E V GI P++ Sbjct: 120 IAHQAVKQGFGVKIITGDRDLLQLVDERIAVNLAGSKLSEARDFVRQEDVQAYLGIRPDQ 179 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 +V +AL GD DNIPG+ GIG KTA LL++Y +LE+I + + K R + + E E Sbjct: 180 VVDFKALAGDPSDNIPGVRGIGEKTALALLKDYAHLEDIYAHLDDLPAKVR-QKLEEGRE 238 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A +SR+L ++ D+ IT+ L + +++ F + +EF LI R+ + AA+ Sbjct: 239 MAFMSRELATIKRDLHITLELAQARTDAIPVEKVLDFFRRMEFRSLITRMEKIFGISAAS 298 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 P + + E I Q S ++ ++ Sbjct: 299 A-PQQVPLIPPEPTSIG--------------QLSLFGEEIVRVG---------------- 327 Query: 359 SQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 P +D T IVNT + + + KL + T + D + + I+++ + Sbjct: 328 --LPPQHDLNTVIVNTPETLAELCAKLAQAEWIALDTETTSTDPLNGALVGISLAV---E 382 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476 T + + + TG+ L E I L F + K+G N+KYD L L Sbjct: 383 PGTGYYLPVGHL----------TGEPQLPLESIRDALAPFLGDPRKPKVGQNLKYDLLAL 432 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS--YTR-KEILKSRKSSIPIDK 532 G+ +G D +L +++D + + +A+++L TR +E++ + K+ + + Sbjct: 433 RLAGMEAQGLAFDTLLAEWLVDPASRALGLKEMAERYLGVQMTRIEELIGTGKNQRTMAQ 492 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 +S +QV +A ++ + L+L +L +++ + +++ ++ P++ V++ ME GI +D Sbjct: 493 VSVAQVAPYAAADAEITLRLKPILEERMLKAGVTRLFQDVEMPLVPVLADMEWNGILLDV 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKT--GQ 649 L+++ E+S+ L +E+ IY L G FN++S +QL +LF +L+ P + KT G Sbjct: 553 PFLQRMGVELSQRLAEIEKEIYALVGHPFNINSTQQLSRVLFEELRLEPPDRRKKTSAGL 612 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T+A+ LE++ G +P++ ILE R+LSK+KSTY D+LP +N RT RVHT ++ ++ Sbjct: 613 YSTSAEVLEELR-GRHPVLDLILENRELSKLKSTYVDALPQQVNPRTGRVHTRFNQTGSV 671 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRLAS +PNLQNIP +TDLG+++R AFI+ L+S DYSQIELRI+AH+A + Sbjct: 672 TGRLASSDPNLQNIPTRTDLGRQVRNAFIADEGWVLLSVDYSQIELRIVAHVANDEAMLA 731 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIH AA I+GV +E V+ +MRRHAK INF +IYG+S F L+ + +EA Sbjct: 732 AFRAGQDIHAATAAAIYGVPLEAVTREMRRHAKAINFGLIYGMSAFGLSRSADLTLAEAE 791 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS-SIRNINERAAI 888 +++K YF +FPG+ +++ + + GYVET+ GRR ++ + +P + +++ ER AI Sbjct: 792 NFVKAYFEQFPGVKRFLDDLRRRAAREGYVETLLGRRRYFPNLKNPANPALKAREEREAI 851 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI + AMI + ++L ++LLQ+HDELV EVP EE+ ++++ H M Sbjct: 852 NAPIQGTAADIIKLAMIRLPEALRAAGSRARLLLQVHDELVLEVPREEMPGTAKLVQHVM 911 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A L++PL + NW E Sbjct: 912 ETAY----PLQIPLTTEARWGKNWGE 933 >gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12] gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12] Length = 941 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 353/990 (35%), Positives = 545/990 (55%), Gaps = 77/990 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + + LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 7 MNQNSKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 61 PTHIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG 173 DD+I T A K+G +++ DKD QLV+ +Y +K + IE V K+ Sbjct: 121 DDVIGTLATEAGKQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGIEQVKAKFD 180 Query: 174 I-PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 I P +++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + Sbjct: 181 IQSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK- 239 Query: 233 ILEYAETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 ET R S+ L ++ DVPI + + L+ E + L + LEF L+ R+ Sbjct: 240 ----VETNREMIIFSKFLATIKIDVPIQLDMNSLVREQADEEALRKIFEELEFRTLMERI 295 Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348 + +++ + + EN + I+ + F + T +E+ + Sbjct: 296 ---FKKESSPSPSPAGPLFSQEN------------SPIQGNLFEEFTPDTP---TEE--K 335 Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408 K LE L L+ Y I Q+ ++KL T + T D ++ + Sbjct: 336 KSNLESLNSLTY------DYQLIDTESKRQEIIKKLLTSEILALDTETTGTDPMDAELVG 389 Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468 ++ S + + +I + G+ TK I+ + F+N+ LK+G N Sbjct: 390 MSFSIAEN--------QAFYIPVP-------AGREEATK-IVREFESVFKNDKSLKVGQN 433 Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524 IKYD LVL YGI +RG D M+ YVL H++ +A+ +L Y +E++ R Sbjct: 434 IKYDMLVLQNYGIEIRGRLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELIGPR 492 Query: 525 -KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 K + +S V +A E+++V L+L +L +L ++ ++ P++ V+ + Sbjct: 493 GKGQKNMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEIEMPLVPVLVNI 552 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E G+++D + LKQ S + L S+E+ IY+L+GE+FN++SPKQ+G+ILF KLK A Sbjct: 553 ESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLAGEEFNIASPKQVGEILFDKLKIVEKA 612 Query: 644 K-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 K TKTGQ+ T+ + LE + + +I ILE+R L K+ STY D+LP IN RT R+HT Sbjct: 613 KKTKTGQYVTSEEVLESLR-NKHDVIGKILEYRGLKKLLSTYIDALPQLINPRTGRIHTS 671 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 ++ T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIELRI+AH++ Sbjct: 672 FNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLS 731 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 K + F + DIH AA+I+ V+I++V+ MRR AKT NF IIYGIS F LA ++ Sbjct: 732 KDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMN 791 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + R EA + I YF +P + Y++K+ R++GYVETIF R+ +INS + +R Sbjct: 792 VDRKEAKELIDGYFETYPQVKAYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGY 851 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAPIQGSAADI + AM +++ + L KM+LQ+HDEL F VP +E Q Sbjct: 852 AERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKEKEIVEQ 911 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ MEKA + VPLK + NW Sbjct: 912 VVIEEMEKAY----RMHVPLKADCGWGTNW 937 >gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] Length = 971 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 341/999 (34%), Positives = 549/999 (54%), Gaps = 60/999 (6%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYRA+YA +P ++ K G +A+ GF N L ++L K+ +H Sbjct: 2 DKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAVLGFVNTLEEVL----KKENPTHI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR+E Y YKA R + PE++ +P+++ +A+ IP +EI G+EADD+I Sbjct: 56 GVAFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEIPGYEADDVI 115 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177 T A K G +++ DKD QLV +Y T E + IE V K+ I P Sbjct: 116 GTLATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPA 175 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ + L GDS DNIPG PG+G KTA L+ +YG++EN+L +++ +K + + + Sbjct: 176 QVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGALKTK-VEANR 234 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV--------- 288 + S+ L ++ DVPIT+ ++ L E+ N L + +EF LI+RV Sbjct: 235 KMIEFSKFLATIKIDVPITLNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRNKKSAF 294 Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348 A TY N L +G A + + D + + S F + S +PQ Sbjct: 295 AGTYTDATGND----LQGRNRTPEGSARQGNMP-DGSGQLSLFGEPASNGKSPASPSSPQ 349 Query: 349 -KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 LF E + ++ Y+ + +++ Q ++T + + Sbjct: 350 GNLFAE----FTDGGTESEKYSNLACLDNLKYDYQLIDT---------EEKRSELLQNLL 396 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFFENEH 461 I +LD + + + + +S +++ T ++I++ + FE E Sbjct: 397 TKEIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEKEG 456 Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517 LK+G NIKYD LVL YG +RG D M+ YVL H++ +A+ +L Y Sbjct: 457 ALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHI 515 Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 +E++ + K + +S + ++A E+++V L+L +L +L ++ ++ P+ Sbjct: 516 EELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEMPL 575 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 + V++ +E G+++D + LKQ S + + +EE ++ L+G FN++SPKQ+G++LF K Sbjct: 576 VPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGEVLFDK 635 Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 L+ AK TKTGQ+ T+ + LE + G + I+ ILE R L K+ TY D+LP INK Sbjct: 636 LRIVEKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINKE 694 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T ++HT ++ T TGRL+S PNLQNIPI+ + G++IR+AFI + SADYSQIEL Sbjct: 695 TGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIEL 754 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH++ + + F+ DIH AA+++ ++I+KV+ + R AKT NF IIYGIS F Sbjct: 755 RIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF 814 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA ++ + R EA + I YF +P I EY++K+ + R+ GY+ETIFGR+ + +INS Sbjct: 815 GLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSR 874 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 S +R ER AINAPIQGSAADI + AM+ +++ + + +KM+LQ+HDEL F V E Sbjct: 875 NSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPE 934 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E +I++ ME A +++VPL+ + +NW E Sbjct: 935 EKEKVQKIVIEEMENA----YHMQVPLRADCGWGSNWLE 969 >gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] Length = 971 Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust. Identities = 340/999 (34%), Positives = 549/999 (54%), Gaps = 60/999 (6%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYRA+YA +P ++ K G +A+ GF N L ++L K+ +H Sbjct: 2 DKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAVLGFVNTLEEVL----KKENPTHI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR+E Y YKA R + PE++ +P+++ +A+ IP +E+ G+EADD+I Sbjct: 56 GVAFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVI 115 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177 T A K G +++ DKD QLV +Y T E + IE V K+ I P Sbjct: 116 GTLATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPA 175 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ + L GDS DNIPG PG+G KTA L+ +YG++EN+L +++ +K + + + Sbjct: 176 QIIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGALKTK-VEANR 234 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV--------- 288 + S+ L ++ DVPIT+ ++ L E+ N L + +EF LI+RV Sbjct: 235 KMIEFSKFLATIKIDVPITLNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRNKKSAF 294 Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348 A TY N L +G A + + D + + S F + S +PQ Sbjct: 295 AGTYTDATGN----DLQGRNRTPEGSARQGNMP-DGSGQLSLFGEPASNGKSPASPSSPQ 349 Query: 349 -KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 LF E + ++ Y+ + +++ Q ++T + + Sbjct: 350 GNLFAE----FTNGGTESEKYSNLACLDNLKYDYQLIDT---------EEKRSELLQNLL 396 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFFENEH 461 I +LD + + + + +S +++ T ++I++ + FE E Sbjct: 397 TKEIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEKEG 456 Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517 LK+G NIKYD LVL YG +RG D M+ YVL H++ +A+ +L Y Sbjct: 457 ALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHI 515 Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 +E++ + K + +S + ++A E+++V L+L +L +L ++ ++ P+ Sbjct: 516 EELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLFYEIEMPL 575 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 + V++ +E G+++D + LKQ S + + +EE ++ L+G FN++SPKQ+G++LF K Sbjct: 576 VPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGEVLFDK 635 Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 L+ AK TKTGQ+ T+ + LE + G + I+ ILE R L K+ TY D+LP INK Sbjct: 636 LRIVEKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINKE 694 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T ++HT ++ T TGRL+S PNLQNIPI+ + G++IR+AFI + SADYSQIEL Sbjct: 695 TGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIEL 754 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH++ + + F+ DIH AA+++ ++I+KV+ + R AKT NF IIYGIS F Sbjct: 755 RIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF 814 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA ++ + R EA + I YF +P I EY++K+ + R+ GY+ETIFGR+ + +INS Sbjct: 815 GLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSR 874 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 S +R ER AINAPIQGSAADI + AM+ +++ + + +KM+LQ+HDEL F V E Sbjct: 875 NSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPE 934 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E +I++ ME A +++VPL+ + +NW E Sbjct: 935 EKEKVQKIVIEEMENA----YHMQVPLRADCGWGSNWLE 969 >gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] Length = 932 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 334/982 (34%), Positives = 533/982 (54%), Gaps = 78/982 (7%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYRA+YA +P ++ K G +AI GF N L +L K+ +H + Sbjct: 13 LFLLDAYALIYRAYYALIKSPRINSK--GFNTSAILGFVNTLEDVL----KKENPTHIGI 66 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E YP+YKA R + PE++ +P+++ +A+ IP +E+ G+EADD+I T Sbjct: 67 AFDPAGPTFRHEAYPEYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVIGT 126 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGI-PPEK 178 A K G +++ DKD QLV +Y +K + +E V K+ I P + Sbjct: 127 LATEAGKRGITTYMMTPDKDYGQLVGENVFMYRPRHNDKAFEVMGVEEVKNKYAIQSPLQ 186 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ L L GD+ DNIPG PG+G KTA L+ ++GN+EN+L + ++K R + E + Sbjct: 187 VIDLLGLMGDASDNIPGCPGVGEKTAQKLIAQFGNIENLLAHTDQLK-GALRTKVEENRK 245 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 SR L ++TDVP+ + ++ L E + L + LEF L+ R+ + Sbjct: 246 QIEFSRFLATIKTDVPLPLDMDALKRESPDEEELRKIFQELEFRTLLERIFKEKPKETPA 305 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 P D+ F + +T+ P+K L L L Sbjct: 306 ATPGQGDL------------------------FGFFTPETT-----SEPEKTNLATLHTL 336 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 N +Y + N + + Q +Q + T S T + D ++ + ++ S + Sbjct: 337 ------NCNYQLVDNEEKLSQLLQNIVTQSVLSLDTETTSTDPIRAELVGMSFSYAEN-- 388 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 + ++ + S+ ++I+ + FEN +K+G NIKYD LVL Sbjct: 389 ------QAFYVPVPADRSE--------AQKIVDRFRPVFENREIMKVGQNIKYDMLVLAN 434 Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPIDKI 533 YG+ ++G D M+ YVL H++ +A+ +L+Y +E++ + K+ + + Sbjct: 435 YGVQLQGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLNYQTIHIEELIGPKGKNQGNMRDL 493 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 + V E+A E+++V L+L L +L + ++E ++ P+I V++ ME G++ID + Sbjct: 494 PPASVYEYACEDADVTLKLKNKLEKELDENNVRKLFEEIEMPLIPVLAYMERNGVRIDTE 553 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKT 652 LK+ S + + +EE +Y L+G +FN++SPKQ+G++LF +LK AK TKTGQ+ T Sbjct: 554 ALKETSRHFTLRMKQIEEEVYQLAGTEFNIASPKQVGEVLFDRLKIVEKAKKTKTGQYVT 613 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + LE + G + ++ ILE R L K+ TY D+LP IN T R+HT ++ T TGR Sbjct: 614 SEEVLESLR-GKHEVVGKILEHRGLKKLLGTYIDALPQLINPETGRIHTSFNQTVTATGR 672 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S PNLQNIPI+ + G++IR+AFI SADYSQIELRI+AH++ + + F+ Sbjct: 673 LSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCIFFSADYSQIELRIMAHLSGDPHMIEAFQ 732 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH A++I+ V +E+V+ + R AKT NF IIYGIS F LA +L + R EA + I Sbjct: 733 KGQDIHAATASKIYKVPLEEVTREQRSKAKTANFGIIYGISVFGLAERLNVDRKEAKELI 792 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF +P + EY++++ R+ GY+ETIF R+ + +INS + +R ER AINAPI Sbjct: 793 DGYFENYPHVKEYMDESIRIARERGYIETIFKRKRYLPDINSRNAVVRGYAERNAINAPI 852 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAADI + AM+ +++ ++ +KM+LQ+HDEL F V EE QI++ ME A Sbjct: 853 QGSAADIIKVAMVRIYQRFLKERIQSKMILQVHDELNFSVLPEEQEKVKQIVIEEMESAY 912 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 ++ PL + NW E Sbjct: 913 ----KMKAPLLADSGWGQNWLE 930 >gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823] gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823] Length = 951 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 341/990 (34%), Positives = 541/990 (54%), Gaps = 83/990 (8%) Query: 2 QKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 + + LFL+D + IYRA++A P ++ K G +A GF N+L +L + Sbjct: 22 ESDKKLFLLDAFALIYRAYFAFAKNPRVNSK--GQNTSAAFGFTNVLIDILNKEK----P 75 Query: 59 SHFAVIFDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AV+FD P T RN + DYKA+R ++PE + + ++ +AF IP +G+EA Sbjct: 76 THIAVVFDPPGGATNRNVDFADYKAHREEMPEDIRSMIEPIKQVIKAFRIPIYMAEGYEA 135 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG 173 DD+I T +AEKEGF +++ DKD QLVS +Y + + ++ V +K+ Sbjct: 136 DDLIGTMAKMAEKEGFKTYMMTPDKDFGQLVSENIFIYKPGRGGDPAVIMGVKEVCEKFE 195 Query: 174 IP-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 + P +++ + L GD+ DNIPGIPG+G KTA L+ +YG++E + N +K K +EN Sbjct: 196 VENPLQVIDILGLWGDAADNIPGIPGVGEKTAKKLIADYGSMEGVFENVEDLK-GKMKEN 254 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 ++ + E +S+ L + D P+ E L E+ + ++ LEF L RV Sbjct: 255 VINFKEQGLMSKLLATIILDAPVEFSAEELKTEEVDRDAILEIFTDLEFRNLAKRVIGE- 313 Query: 293 DCDAANIEPVVLDINTTENKGI---AIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349 E VV EN + ++ +D TS +++ + + + P+ Sbjct: 314 -------EIVVTSAGVNENGQLDLFGTQSLVDVQQAQPTSGVKTIATEKASYHLVNLPE- 365 Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409 ER L TK++ K S F T ++A H+ + + Sbjct: 366 ---ERKALL----------TKLLKEK-------------SVCFDTETTDINALHADLVGM 399 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 + S ++ E ++ + + + I+ K FFE++ KI HN+ Sbjct: 400 SFSYKER--------EAYYVAVPKDKKE--------IQAIVDEFKPFFEHKSIEKIAHNM 443 Query: 470 KYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSR 524 KYD VLHRYG+ G D M+ Y++ S + +A+ +L+YT I K Sbjct: 444 KYDIQVLHRYGVQFAGPLFDTMIAHYLIQP-ESKQGMDFLAEYYLNYTPVSIETLIGKKG 502 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 K + + + ++A E++++ QL L P++ + L ++ ++ P++ V+++ME Sbjct: 503 KGQGNMGDLQPEAISDYACEDADITFQLKQLFAPQIEKDHLKSLFYDMEMPLVSVLAEME 562 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 G+ ID L+ S ++++ LE+ I +L+G FN+ SPKQLGD+LF +K S AK Sbjct: 563 EEGVAIDIPHLEAYSKQLAEETEGLEKRIKELAGMDFNVDSPKQLGDVLFEHMKISSKAK 622 Query: 645 -TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 TKTGQ+ T++D+ Q + D+ II IL++RQ+ K+KSTY D LP + RVHT Y Sbjct: 623 KTKTGQY-ATSEDILQQHKNDHEIIPCILDYRQMKKLKSTYVDPLPTMKDPVDGRVHTSY 681 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIA 762 T TGRL+S PNLQNIPI+++ G++IRRAFI+ +L+SADYSQIELRI+A +A Sbjct: 682 MQTVTATGRLSSNNPNLQNIPIRSERGKEIRRAFIARSKDFQLMSADYSQIELRIIAALA 741 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 T + Q F++ +DIHR AA++F V ++ V+ R AK +NF IIYG S F L+ L Sbjct: 742 DDTNMIQAFKDKVDIHRATAAKVFHVELDDVTKDQRSAAKAVNFGIIYGQSAFGLSQNLG 801 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 I R+EA I YF ++ I Y++ R+NGYVETI RR + +INS + +R Sbjct: 802 ISRTEAKQIIDSYFAQYSTIKTYMDNAVKDARENGYVETIMQRRRYLPDINSANAVVRGF 861 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER A+NAPIQGSAADI + AM++V K+++ K+ +KM+LQ+HDELVF+V +E + Sbjct: 862 AERNAVNAPIQGSAADIVKLAMVAVDKAMKKAKVKSKMILQVHDELVFDVHNDEQEVMKK 921 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ +ME A I L VP++V ++++NNW Sbjct: 922 LVKEAMENA----IQLVVPMEVEMELANNW 947 >gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] Length = 920 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 337/983 (34%), Positives = 541/983 (55%), Gaps = 79/983 (8%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYR++YA +P ++ K G +AI GFCN L +++ + +H Sbjct: 2 DKLFLIDAYALIYRSYYAFIRSPRINSK--GQNTSAILGFCNTLNEVITKEQ----PTHI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 AV FD+ +TFR+E +PDYKA R + PE + +P ++ +A IP ++ GFEADDII Sbjct: 56 AVAFDH-GLTFRHEAFPDYKAQREETPEDIKLAVPYIKQILEAMRIPILQTDGFEADDII 114 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGIP-PE 177 T A +G +++ DKD QL+ +Y E I + K+G+P Sbjct: 115 GTVALKAGNDGIETYMLTPDKDYGQLIRNNIFMYRPRHGGGYEIIGPNEIQDKYGVPEAA 174 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ L AL GDS DN PG PG+G KTAA + ++G++EN+L + +K K RE + Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTAAKFINQFGSVENLLNHTDELK-GKMREKVEGAV 233 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + ++S+ L +RTDVP + + L +E + +L + LEF L+N+ Sbjct: 234 DDIKMSKFLATIRTDVPFDMKWDELKVEAIDEEKLTEIFQELEFKTLLNKFIKK---GKE 290 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N + L +N E E +R + S SLSD P K Sbjct: 291 NPKTENLQLNLFE------EIPTERAVAPEKSPNLSLSD---------VPHK-------- 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I N ++ ++ + T S T ++DA ++ + ++ S ++ Sbjct: 328 ----------YKLIENEEEAKKICEYFFTKQILSLDTETTSVDAIDAELVGLSFSVEEK- 376 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E ++ +S + + +++ K +ENE LK+G NIKYD VL Sbjct: 377 -------EAFYVAISPNREE--------ALNMVNIFKPLYENEEILKVGQNIKYDYEVLK 421 Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPIDK 532 +YGI+++G D M+ Y++ H++ +A+ L+Y ++I+ + K + Sbjct: 422 KYGITLKGKLFDTMIAHYLIQP-ELHHNMDYMAETLLNYQTVHIEDIIGPKGKKQKNMRD 480 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 ++ ++V ++A E++++ L+L L PKL ++ ++ P++ V++ ME+ GI++D Sbjct: 481 LAPAEVSDYACEDADITLRLKNALEPKLKEVNAESLFWEIEMPLVRVLADMELHGIRLDT 540 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTGQWK 651 + L++ S ++ + E IY+L+GE FN+SSPKQ+G+ILF KL+ KTKTGQ+ Sbjct: 541 EALEETSRIFTERMNKYEAEIYELAGETFNISSPKQVGEILFGKLQIMEKPKKTKTGQFV 600 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+ + L + +PI++ ILE+R + K+ STY D+LP + +T +HT ++ A T TG Sbjct: 601 TSEEVLISLQS-KHPIVEKILEYRGIKKLLSTYIDALPKLVKPQTGHIHTSFNQALTATG 659 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP++TD G++IR+ FI P SADYSQIELRI+AH+++ + + F Sbjct: 660 RLSSSDPNLQNIPVRTDDGKEIRKCFIPEPDCLFFSADYSQIELRIMAHLSEDENMMEAF 719 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIHR AA+I+ ++E V+ R+ AK NF IIYGI+ + LA ++ IP EA + Sbjct: 720 RKGHDIHRATAAKIWHEDMENVTDAQRKKAKQANFGIIYGITTYGLAQRMDIPNGEAKEL 779 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I YF FP + Y+E+ K R+ GY ETIF RR + +INS +++R ER AINAP Sbjct: 780 IADYFKTFPKVQAYMEEAKEVARRKGYAETIFHRRRYLADINSRNATVRGFAERNAINAP 839 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGS ADI + AM+++H+ E ++ +KM+LQ+HDEL F V EE +I++ M+ A Sbjct: 840 IQGSEADIIKVAMVNIHQRFEREQIRSKMILQVHDELNFSVYPEEKELVERIVLEEMQNA 899 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 LRVPL + NW E Sbjct: 900 ----YQLRVPLIADAGWGKNWLE 918 >gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] Length = 921 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 338/987 (34%), Positives = 539/987 (54%), Gaps = 81/987 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 MQK LFL+D + IYR++YA P ++ K GL +AI GF N L ++L + Sbjct: 1 MQK---LFLLDAYALIYRSYYAFIKNPRINSK--GLNTSAIMGFLNTLNEVLTKEK---- 51 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E +P YKA R + PE + +P+++ +A+ IP +++ GFEA Sbjct: 52 PTHIGVAFDPHGPTFRSEAFPAYKAQREETPEDIRKAVPIIKDLLKAYRIPILQVDGFEA 111 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A G +++ DKD QLV +Y E + + + +K+ I Sbjct: 112 DDVIGTLAEKAGSIGVETYMLTPDKDYGQLVRDNVFIYRPRHGGGYETMGPKEICEKYNI 171 Query: 175 P-PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P P ++ L AL GDS DN PG PG+G KTAA L+ E+G++E +L +S IK K RE + Sbjct: 172 PSPMAVIDLLALMGDSADNFPGCPGVGEKTAAKLIDEFGSIEQLLARSSEIK-GKLREKV 230 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 ++ E ++S L ++TDVPI + +E+L L + N L L LE +RV Sbjct: 231 EQHVEDIKMSYFLATIKTDVPIELDMENLKLVEPNEDELGKLLTELEMKSFADRV----- 285 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 + ++ + ++D F+ + +N + Sbjct: 286 ------------LKKSQKPQKVVNQQLDL--------FAEFATDGQAVNENTS------- 318 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 + L P N Y + N +D+++ T S T + A ++ + ++ + Sbjct: 319 -FETLKTTPHN---YKLVENQEDLKKLCDYFLTNKILSLDTETTSTSAIDAELVGLSFAV 374 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 + E ++ + + + +I++ K +EN LK+G N+KYD Sbjct: 375 KE--------FEAFYVPVPANREE--------ALQIVNIFKPAYENPEILKVGQNLKYDL 418 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528 VL YGI ++G D M+ Y++ H++ +A+ +L+Y +E++ + K+ Sbjct: 419 EVLRNYGIELKGKMWDTMIAHYLIQP-ELHHNMDYMAEIYLNYQTIHIEELIGPKGKNQK 477 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + + SQV E+A E++++ L+L L P+L + ++ ++ P++ V+++ME+ G+ Sbjct: 478 SMRSLPPSQVYEYAAEDADITLRLKNKLEPELKKAECEDLFYNIEMPLMPVLAEMELNGV 537 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647 +D L + S + + + +E IY+L+GE+FN++SPKQ+G+ILF KLK AK TKT Sbjct: 538 CLDTASLAETSKQFTNRMNEIEARIYELAGEQFNIASPKQVGEILFDKLKIVEKAKKTKT 597 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQ+ T+ + L+Q+ + I+ +ILE R L K+ TY D+LP IN +T +HT ++ Sbjct: 598 GQYVTSEEVLQQLR-NKHEIVADILEHRGLKKLIGTYIDALPKLINPKTGHIHTSFNQTI 656 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S +PNLQNIPI+ + G++IR+AFI P SADYSQIELR++AH+++ + Sbjct: 657 TATGRLSSSDPNLQNIPIRGEDGKEIRKAFIPEPGCLFFSADYSQIELRVMAHLSQDAEM 716 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 +VF D+H AA I+ IE+V+ R +K NF IIYGI+ F LA +L IPR E Sbjct: 717 IKVFSEGKDLHAATAANIYKKPIEEVTRDERTKSKRANFGIIYGITVFGLAERLDIPRDE 776 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A I YF FP +H+Y+EK+K R+ GYV T+FGRR + +INS +++R ER A Sbjct: 777 AKMLIDGYFDTFPQVHDYMEKSKEVAREKGYVTTLFGRRRYLPDINSHNATVRGFAERNA 836 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQG+AADI + AMI ++ + + +KM+LQ+HDEL F V +E I++ Sbjct: 837 INAPIQGTAADIIKVAMIRIYNRFKAEGIRSKMILQVHDELNFSVYPDEKEKVEGIVLQE 896 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ A +NL VPL + NW E Sbjct: 897 MQNA----LNLSVPLVADSGFGKNWLE 919 >gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1] Length = 962 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 354/1009 (35%), Positives = 535/1009 (53%), Gaps = 88/1009 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 MQK+ LFL+D + ++RA+YA P ++ K G NA GF N L L+ N + Sbjct: 1 MQKK--LFLLDAFALVFRAYYALIRNPRITSK--GRNTNAQFGFTNTLVDLINNQK---- 52 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AV FD A+T R+ + DYKANR + PE +L +P ++ +A IP I I G+EA Sbjct: 53 PTHMAVCFDTHALTERHTDFADYKANRQETPEDILAAVPDIKKIIEALNIPVIAIDGYEA 112 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DD+I AE G+ V +++ DKD QLV+ +Y + E + + V +KWG Sbjct: 113 DDVIGALARQAELAGYDVYMVTPDKDYGQLVTEKIKIYKPPYQGGSIEIMGPKEVCEKWG 172 Query: 174 IPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 I +++ + L GD++DNIPGI G+G KTAA LL EY LENIL NA IK E Sbjct: 173 IKNVSQVIDILGLMGDAVDNIPGIRGVGEKTAAKLLAEYETLENILANADTIK-GSLGEK 231 Query: 233 ILEYAETARLSRKLVMLRTDVPITI-PLEHLILEDCNGPRLISFLKALEFTKLINRV--- 288 I E A +S+KL + TD+P I E +++ N L LEF R+ Sbjct: 232 IRAGKEDAIMSKKLATIITDIPAAIFHEEDFRIKEMNKEALKEVFDLLEFRSFTKRLLGE 291 Query: 289 -----------ATTYDCDAANIEPVVLDINTTE-----NKGIAIETEIDRDTTIKTSQFS 332 ++ D + + NT + N G + D + + Sbjct: 292 GAGALPDQWRPSSNTDTGQSTTGNFKVKANTNQLDLFGNNGAVVPVTADAEQI--QEEPD 349 Query: 333 SLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF 392 +L + N TP Y + ND IQQ++ + SF Sbjct: 350 ALPTGPAAANIHNTPH-----------NYILLNDEIA-------IQQFIDSVMGETEISF 391 Query: 393 KIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY 452 T +D ++ + ++ K E ++ ++ ++L+ Sbjct: 392 DTETTGLDPNEAELVGLSFCIT--------KGEAYYVPCPADRNE--------CIQLLNN 435 Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLD-SGRSSHDIASIAQ 510 + F N +G NIKYD L+L YG ++G D ML YV++ G+SS D+ ++ Sbjct: 436 FQPLFNNASITWVGQNIKYDLLMLKWYGFELQGNIFDTMLAHYVIEPDGKSSMDL--LSA 493 Query: 511 KWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 K+L Y I K K + I +++E+A E++++ LQL + P + E++ Sbjct: 494 KFLGYQPVSITELIGKKGKGQGNMRDIEIEKIKEYAAEDADITLQLKNVFLPLIKKEQVE 553 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 V+ ++ P++ V++ ME GI+ID+ LK S + K+ + E+++Y+ +G KFNL+SP Sbjct: 554 KVFAEVENPLVKVLTNMEFEGIRIDEQFLKDYSIVLQKDAMEFEQSVYEQAGVKFNLASP 613 Query: 627 KQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 KQLG++LF K+K P KTKTGQ+ T L ++ + I +IL +R+L+K+K+TY Sbjct: 614 KQLGEVLFDKMKLDPKAKKTKTGQYATGEDVLAKL-ANQHKICNDILSFRELTKLKNTYV 672 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK- 744 D+LP IN +T RVHT Y+ A +TGRL+S PNLQNIP++T+ G++IR+AFI Sbjct: 673 DALPQLINSKTGRVHTSYAQAVAVTGRLSSTNPNLQNIPVRTERGREIRKAFIPRDENHV 732 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L+SADYSQIELRI+A I+ + + F+ DIH AA++F V +V+ +MR AK++ Sbjct: 733 LVSADYSQIELRIVAAISADVNMCEAFKTGKDIHTATAAKVFNVEESEVTKEMRYKAKSV 792 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF IIYG F LA L I R+EA I Y +FP I +Y++ T NF ++ GYVET+ G Sbjct: 793 NFGIIYGQGAFGLADNLGISRTEAKAIIDNYKKQFPNIQQYMDNTINFAKETGYVETLMG 852 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 R+ +INS ++R ER AIN+PIQG+AAD+ + AMI + + + H +KMLLQ+ Sbjct: 853 RKRWLKDINSANFTVRGFAERNAINSPIQGTAADMIKLAMIKIDAAFKAHHFKSKMLLQV 912 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKA-CLPKINLRVPLKVNIKVSNNW 972 HDELVF+V +EE+ +I+ M+ A LP VP I NW Sbjct: 913 HDELVFDVLKEELEKVKPVILDCMQHALALPN---DVPTNAEIGDGENW 958 >gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4] gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4] Length = 971 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 339/999 (33%), Positives = 549/999 (54%), Gaps = 60/999 (6%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYRA+YA +P ++ K G +A+ GF N L ++L K+ +H Sbjct: 2 DKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAVLGFVNTLEEVL----KKENPTHI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR+E Y YKA R + PE++ +P+++ +A+ IP +E+ G+EADD+I Sbjct: 56 GVAFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVI 115 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177 T A K G +++ DKD QLV +Y T E + IE V K+ I P Sbjct: 116 GTLATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPA 175 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ + L GDS DNIPG PG+G KTA L+ +YG++EN+L +++ +K + + + Sbjct: 176 QVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGALKTK-VEANR 234 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV--------- 288 + S+ L ++ DVPIT+ ++ L E+ N L + +EF LI+RV Sbjct: 235 KMIEFSKFLATIKIDVPITLNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRNKKSAF 294 Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348 A TY N L +G A + + D + + S F + S +PQ Sbjct: 295 AGTYTDATGN----DLQGRNRTPEGSARQGNMP-DGSGQLSLFGEPASNGKSPASPSSPQ 349 Query: 349 -KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 LF E + ++ Y+ + +++ Q ++T + + Sbjct: 350 GNLFAE----FTNGGTESEKYSNLACLDNLKYDYQLIDT---------EEKRSELLQNLL 396 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFFENEH 461 I +LD + + + + +S +++ T ++I++ + FE E Sbjct: 397 TKEIFSLDTETTGTDPITAELVGMSFSYAENQAFYVPVPADRTEAQKIVNEFRPAFEKEG 456 Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517 LK+G NIKYD LVL YG +RG D M+ YVL H++ +A+ +L Y Sbjct: 457 ALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHI 515 Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 +E++ + K + +S + ++A E++++ L+L +L +L ++ ++ P+ Sbjct: 516 EELIGPKGKGQKNMRDLSPEAIYKYACEDADITLKLKNILEQELKTNDAEKLFYEIEMPL 575 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 + V++ +E G+++D + LKQ S + + +EE ++ L+G FN++SPKQ+G++LF K Sbjct: 576 VPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQVGEVLFDK 635 Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 L+ AK TKTGQ+ T+ + LE + G + I+ ILE R L K+ TY D+LP INK Sbjct: 636 LRIVEKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINKE 694 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T ++HT ++ T TGRL+S PNLQNIPI+ + G++IR+AFI + SADYSQIEL Sbjct: 695 TGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSADYSQIEL 754 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH++ + + F+ DIH AA+++ ++I+KV+ + R AKT NF IIYGIS F Sbjct: 755 RIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVF 814 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA ++ + R EA + I YF +P I EY++K+ + R+ GY+ETIFGR+ + +INS Sbjct: 815 GLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSR 874 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 S +R ER AINAPIQGSAADI + AM+ +++ + + +KM+LQ+HDEL F V E Sbjct: 875 NSVVRGYAERNAINAPIQGSAADIIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPE 934 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E +I++ ME A +++VPL+ + +NW E Sbjct: 935 EKEKVQKIVIEEMENA----YHMQVPLRADCGWGSNWLE 969 >gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134] gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134] Length = 955 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 349/1001 (34%), Positives = 545/1001 (54%), Gaps = 84/1001 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYRA +A P ++ K G+ A+ GF N L ++LQ +H + Sbjct: 4 LFLLDAMAMIYRAHFAFSKNPRINSK--GMNTGAVLGFTNSLVEVLQKEN----PTHIGI 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+ Y +YKANR + PE + +P + +AF IPA+ + G+EADDII T Sbjct: 58 AFDTAEPTFRHIEYKEYKANREEQPEDITNAIPYIYKMVEAFKIPALVLPGYEADDIIGT 117 Query: 124 YTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYD-TVKEEKIDI---EHVIKKWGIPP-E 177 A +EGF V +++ DKD QLV LY + IDI V++K+ I + Sbjct: 118 IAKRAAREGFDEVYMMTIDKDYAQLVEDKIFLYKPSYMGNGIDIWDVNKVLEKFDIERVD 177 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ + GD++DNIPGIPG+G KTA L+ YG++E +L N ++K K++E + Sbjct: 178 QVIDFLGMQGDAVDNIPGIPGVGPKTAVKFLKAYGSVEGLLENTDKLK-GKQKEKVEASR 236 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS+KL + +VPI E+L E + ++ + + LEF L R+ D A Sbjct: 237 DQALLSKKLATINIEVPIDFSEENLKYESFDKDKVKALFEELEFRTLTRRLFKE-DAPAG 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 A + + R + +Q D T +S+ T L + Sbjct: 296 -----------------ATKKKTKRSPKVAANQMGLFGDGTPADDSQATAPATSLANIGN 338 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + Y I + + L+ F T ++ A ++ + IA +T Sbjct: 339 TVHH------YYAIDTPGKRTELIAHLKQQDEFCFDTETTSLVAQDAELVGIAFAT---- 388 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + E ++ + + I+ K+ FE+E KI N+KYD +VL Sbjct: 389 ----YAGEAYYVPTPADQKE--------AQAIVDEFKEVFEDESIGKIAQNLKYDWVVLK 436 Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----KSRKSSIPIDK 532 YGI +G F D ML Y+L H++ +A+ +L+Y EI K K + Sbjct: 437 NYGIEPKGKFFDTMLAHYLLQPDMR-HNMDVLAKSYLNYEPVEITSLIGKKGKKQGSMRD 495 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH--------------VYERLDKPMID 578 + ++ E+A E++++ LQL + ++ + L H + + ++ P+I+ Sbjct: 496 VELDKITEYAGEDADITLQLKEIFDAQIKAQDLRHPAPEDGGEKVTLEKLLDEVETPLIE 555 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V++ +E G+++D + L ++S E++K ++ LEE IY ++GE+FN++SPKQLG+ILF KL+ Sbjct: 556 VLATVETNGVRLDSESLAKLSKELAKEVVVLEEKIYKIAGEQFNIASPKQLGEILFGKLQ 615 Query: 639 F-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 P KTK+GQ+ T + L ++ N I+++IL++R L K+K+TY D+LP +NK+T Sbjct: 616 LDPKAKKTKSGQYATGEEILVKL-ADKNEIVQHILDFRGLQKLKNTYVDALPELVNKKTG 674 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIEL 755 +HT Y+ A TGRL+S PNLQNIPI+T G+++RRAFI P + + L++ADYSQIEL Sbjct: 675 LIHTSYNQAVAATGRLSSTNPNLQNIPIRTAQGREVRRAFI-PRSDEFVLLAADYSQIEL 733 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+A ++ + + F+N DIH A++I+ V +++V MRR AKT NF IIYGIS Sbjct: 734 RIMAEFSQDATMIKAFQNGEDIHATTASKIYKVPLDQVDSDMRRKAKTANFGIIYGISAH 793 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 L+ +L IPR EA + IK YF FP + +Y++ N R+ YVETI GRR + INS Sbjct: 794 GLSERLNIPRKEAGEIIKAYFEEFPAVKQYMDDMINKAREQEYVETILGRRRYLRNINSR 853 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + R ER AINAPIQGSAAD+ + AMI +H+ L+ L +KM+LQ+HDELVF+ ++ Sbjct: 854 NAVERGNAERNAINAPIQGSAADMIKIAMIRLHEFLKKEHLKSKMILQVHDELVFDAHKD 913 Query: 936 EITTASQIIVHSMEKACLPKIN--LRVPLKVNIKVSNNWQE 974 E+ IV M K L IN ++VP++V + W E Sbjct: 914 ELGILKPAIVDLM-KNALSSINRTMQVPMEVEVGEGTTWLE 953 >gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] Length = 921 Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust. Identities = 332/982 (33%), Positives = 530/982 (53%), Gaps = 80/982 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYRA+YA +P ++ K G +AI GF N L ++ R++ A+ Sbjct: 4 LFLLDAYALIYRAYYALIRSPRINSK--GENTSAIYGFVNTL----EDIRRKEAPDMLAI 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E YPDYKA R PE + +P+++ +A+ IP IE++GFEADD+I T Sbjct: 58 AFDPSGPTFRHEAYPDYKAQREATPEDIKRSVPIIKDIIRAYNIPIIEVKGFEADDVIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL----YDTVKEEKIDIEHVIKKWGIP-PEK 178 A EG V +++ DKD QLV P + + E + +E V +K+G+ P++ Sbjct: 118 VAKRAAAEGIEVRMVTPDKDYAQLVGPNVLMQRPGHGNAPWEILGVEEVCQKYGLTDPKQ 177 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ AL GD+ DNIPG PG+G KTA L+Q +G++EN+L + +K +R + + + + Sbjct: 178 VIDYLALMGDAADNIPGCPGVGPKTATTLIQRFGSIENLLEHTDELKGAQR-QKVEDNVD 236 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 R S+ L ++TDVP+ + E L + + +L +ALEF ++R + + Sbjct: 237 KIRFSKFLTTIKTDVPLDVNWETWKLTEPDFDQLQPIFEALEFRTFLSRWQKSQN----- 291 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 + ++ I+ F+ L+D+ + E + + Sbjct: 292 ---------------------LQKNQAIQGDLFAMLADEDAGDAKESS-----------I 319 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 S Y + N +I+ + +L T + T +A +K + ++ ST + Sbjct: 320 STLENTEHEYHLLDNEDEIRDFCAQLLTFEKVALDTETTDKEAIKAKLVGMSFSTAPGR- 378 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 +I +S T K L L+ F+E L +G N+KYD VL Sbjct: 379 -------AWYIPVSRETDT--------VKARLELLRPFWEKADVLIVGQNLKYDLTVLAS 423 Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----RKEILKSRKSSIPIDKI 533 YG+ +G D ML YV+ +H++ +A +L+Y + I + + + Sbjct: 424 YGVKPKGRLFDTMLSHYVVQP-ELAHNMDYLASVYLNYRPIPIEQLIGPKGRGQRNMGDL 482 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 V E+A E+++V L+L L + + ++ ++ P++ V+++ME G+ +D + Sbjct: 483 DPKDVFEYACEDADVTLRLMAPLEKAMRENGVEQIFYDIEMPLMPVLARMERNGVCLDTN 542 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKT 652 L+++S+E + ++ LE IY L+G F ++SPKQ+G++LF +LK AK TK+GQ+ T Sbjct: 543 ALQEISSEFTARMVKLEAEIYQLAGHPFMITSPKQVGEVLFGELKIDEKAKKTKSGQYST 602 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + + L +++ + I+ IL R L K+ STY ++LP +N +T +HT ++ A T TGR Sbjct: 603 SEEVLVRLSH-KHEIVGKILAHRGLKKLLSTYVEALPKLVNPQTGHLHTTFNQAVTSTGR 661 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S PNLQNIP++ + G++IR+AFI SADYSQIELRI+AH++K L + F+ Sbjct: 662 LSSSNPNLQNIPVRGEDGREIRKAFIPEAGDVFFSADYSQIELRIMAHLSKDPHLIEAFK 721 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH AA IF ++ +VS RR AKT NF IIYGIS F LA ++ + R+EA + I Sbjct: 722 KGEDIHAATAARIFKKDLSEVSRDERRKAKTANFGIIYGISAFGLAERMDVSRTEARELI 781 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF +P + EY++ + R+ GY+ET FGRR + +INS + +R ER A+NAPI Sbjct: 782 DNYFSTYPKVKEYMDSSIEKARRRGYIETAFGRRQYLADINSHNAVVRGYAERVAVNAPI 841 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI + AMI + + L L TKM+LQ+HDEL F +P E+ A IIV ME A Sbjct: 842 QGTAADIIKLAMIRIDQRLRAEGLKTKMILQVHDELNFSIPPAELECAKAIIVSEMESA- 900 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VPL+ + NW E Sbjct: 901 ---YQMSVPLEADCGTGKNWLE 919 >gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A] gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A] Length = 971 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 346/1006 (34%), Positives = 552/1006 (54%), Gaps = 74/1006 (7%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYRA+YA +P ++ K G +A+ GF N L ++L K+ +H Sbjct: 2 DKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAVLGFVNTLEEVL----KKENPTHI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR+E Y YKA R + PE++ +P+++ +A+ IP +E+ G+EADD+I Sbjct: 56 GVAFDPAGPTFRHEAYEQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVPGYEADDVI 115 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177 T A K G +++ DKD QLV +Y T E + IE V K+ I P Sbjct: 116 GTLATEAGKRGITTYMMTPDKDYGQLVGGNVFMYRPKHTGGFEVMGIEEVKAKFDIQSPA 175 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ + L GDS DNIPG PG+G KTA L+ +YG++EN+L +++ +K + + Sbjct: 176 QVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAQYGSIENLLSHSAELKGALKTK-----V 230 Query: 238 ETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288 ET R S+ L ++ DVPI + ++ L E+ N L + +EF LI+RV Sbjct: 231 ETNRKMIEFSKFLATIKIDVPIALNMDELKREEPNEEELRKIFEEMEFRTLIDRVFNRDK 290 Query: 289 ----ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344 A TY DA +P G + + + + S F + S Sbjct: 291 KSAFAGTY-TDATGNDPQ----GRNRTPGGSARQGNTPNGSGQLSLFGEPASNGESPASP 345 Query: 345 QTPQ-KLFLE------RLQKLSQYP-INNDSYT-KIVNTKDIQ-QWVQKLETIGSASFKI 394 +PQ LF E +K S ++N Y ++V+T++ + + +Q L T S Sbjct: 346 SSPQGNLFAEFTDGGTESEKYSNLACLDNLKYDYQLVDTEEKRTELLQNLLTKEIFSLDT 405 Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454 T D ++ + ++ S + + ++ + ++ ++I++ + Sbjct: 406 ETTGTDPITAELVGMSFSYAEN--------QAFYVPVPADRAE--------AQKIVNEFR 449 Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL 513 FE E LK+G NIKYD LVL YG +RG D M+ YVL H++ +A+ +L Sbjct: 450 PAFEKEGVLKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQP-ELRHNMDYLAEIYL 508 Query: 514 SYTR---KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569 Y +E++ + K + +S + ++A E+++V L+L +L +L ++ Sbjct: 509 HYQTIHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAEKLF 568 Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629 ++ P++ V++ ME G+++D + LKQ S + + +EE ++ L+G FN++SPKQ+ Sbjct: 569 YEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIASPKQV 628 Query: 630 GDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 G++LF KL+ AK TKTGQ+ T+ + LE + G + I+ ILE R L K+ TY D+L Sbjct: 629 GEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDAL 687 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748 P INK T ++HT ++ T TGRL+S PNLQNIPI+ + G++IR+AFI + SA Sbjct: 688 PLLINKETGKIHTSFNQTVTATGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDDGCEFFSA 747 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELRI+AH++ + + F+ DIH AA+++ ++I+KV+ + R AKT NF I Sbjct: 748 DYSQIELRIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDKVTREQRSKAKTANFGI 807 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 IYGIS F LA ++ + R EA + I YF +P I EY++K+ + R GY+ETIFGR+ + Sbjct: 808 IYGISVFGLAERMNVDRKEAKELIDGYFETYPQIKEYMDKSIDLARGQGYIETIFGRKRY 867 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS S +R ER AINAPIQG AADI + AM+ +++ + + +KM+LQ+HDEL Sbjct: 868 LPDINSRNSVVRGYAERNAINAPIQGGAADIIKVAMVRIYQRFQSESIKSKMILQVHDEL 927 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 F V EE +I++ ME A ++VPL+ + +NW E Sbjct: 928 NFSVLPEEKEKVQKIVIEEMENA----YRMQVPLRADCGWGSNWLE 969 >gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02] gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18] gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140] gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19] gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11] gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18] gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1] gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1] gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332] gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679] gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035] gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae TCDC-NG08107] Length = 908 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 345/956 (36%), Positives = 519/956 (54%), Gaps = 70/956 (7%) Query: 31 DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEM 90 DG P A+ G NML +L R E + AV+FD FR++++ +YKA RP +P+ Sbjct: 9 DGAPTGALYGVLNMLRRL----RSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPMPDD 64 Query: 91 LLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146 L PQ LP LVRL G P + I EADD+I T + G V + + DKD+ Q Sbjct: 65 LRPQAEALPDLVRLT----GWPVLVIGQVEADDVIGTLAKQGAEHGLRVIVSTGDKDMAQ 120 Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206 LV L +T+ E +DIE V K+G+ P+++ AL GD +DN+PG+ G KTA Sbjct: 121 LVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALIGDKVDNVPGVEKCGPKTAVK 180 Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266 L+ YG+L+ ++ +A IK K EN+ LS LV ++TDV + H L D Sbjct: 181 WLEAYGSLQGVMEHAPEIK-GKVGENLQAALPQLPLSYDLVTIKTDVDL-----HTELSD 234 Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326 + + R A + + +D + E E + +T Sbjct: 235 G--------------IESLRRTAPKW-------AQLAVDFKRWGFRTWLKEAESNMNTGS 273 Query: 327 KTSQFSSLS-DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385 F S S + + +N+E +K R +K + P D Y + + KL Sbjct: 274 TDDLFGSDSIGEQAALNAEIPSEK----RAEKATA-PEKLD-YQAVTTEAQFAALLDKLA 327 Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNT 444 + T ++DA +++ + I+I+ F+ E ++I V S + + Sbjct: 328 KADTIGIDTETTSLDAMNAELVGISIA---------FQAGEAVYI--PVGHSLTAAPEQL 376 Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH 503 +++L LK EN KIG N+KYD+ V YGI++ D ML SY+++S H Sbjct: 377 DLQDVLGRLKPHLENPALKKIGQNLKYDQHVFANYGIALNNIAGDAMLASYIIES-HLGH 435 Query: 504 DIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 + ++ +WL T + + I ++ Q E+A ++++ L+L LR ++ Sbjct: 436 GLDELSGRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEARLRAQM 495 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 +K L +YE+++ P+ V+ +ME G+QID+ L + SAE+ L+ LE+ Y +G+ Sbjct: 496 D-DKQLEMYEKMELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 554 Query: 621 FNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 FNL+SPKQL +ILF K+ P+ KT G T LEQ+ D P+ K IL+ R L+ Sbjct: 555 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQL-APDYPLPKIILQNRSLA 613 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 K+KSTY D LP I+ R RVHT Y+ A +TGRLAS PNLQNIPI+T G+++RRAF Sbjct: 614 KLKSTYTDKLPEMISPRDNRVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFT 673 Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 +PP ++SADYSQIELRI+AH++ L F++ D+HR AAE+FG E VSP+ R Sbjct: 674 APPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPENVSPEQR 733 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 R+AKTINF +IYG+ + LA L I A ++I RYF R+PG+ EY+++TK GY Sbjct: 734 RYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGY 793 Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 VET+FGRR++ +I + ++ R ERAAINAP+QG+A+D+ +RAMI+V L D + + Sbjct: 794 VETLFGRRLYLPDIRNKNANARAGAERAAINAPMQGTASDLIKRAMINVRNWLSD-GIGS 852 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 K+++Q+HDELV EV E E+ + + M K + L VPL + V NW+E Sbjct: 853 KLVMQVHDELVLEVVETELDFVKEKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 906 >gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] Length = 946 Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust. Identities = 344/989 (34%), Positives = 541/989 (54%), Gaps = 87/989 (8%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +K+ LFL+DG + +YRA+YA K DGLP A+ GF + L K+ + + + + Sbjct: 27 EKKPALFLIDGMAMVYRAYYALQSARMKTRDGLPSGAVFGFTSALLKIFETYKPD----Y 82 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV FD TFR+++Y YKANRP PE L+ QL + GIP I+ GFEADD+ Sbjct: 83 LAVAFDSREKTFRHDLYDLYKANRPSPPEDLISQLDAIYQLVTLLGIPIIKTAGFEADDL 142 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176 I + EK A+ I++ DKDL QLV+ + K E + I+ + ++G+ P Sbjct: 143 IGSLARKFEK-SCAIYIVTPDKDLAQLVNDEVYILKPGKIQNELELLGIKEITIQFGVRP 201 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E+ AL GD+ DNIPG GIG KTAA L+ +YG++ +IL+N + I K R+++ E+ Sbjct: 202 EQFTDFLALAGDASDNIPGAKGIGPKTAASLIGKYGSIASILLNLNEI-SPKNRQSLEEF 260 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 +L R+LV +RTD+ + + L++L + +++ FLK E + R+ + Sbjct: 261 QPRLKLIRQLVTIRTDLDLHVSLQNLATTTPDVEKILPFLKQYELKSIAARLPAIFP--E 318 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 N++P L + N +++ + + + S D Sbjct: 319 MNLQPESLPADNENN---------EKNDSPELTAPGSAKDGAD----------------- 352 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 Y + +++Q V++L + + T ++D F ++ + I++S + Sbjct: 353 -----------YRIVTRKEELQALVEQLNHAAALAVDTETTSLDTFQAELVGISLSIKPK 401 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLV 475 + F+ GK + + + L LK EN K G N+KYD LV Sbjct: 402 --------QAWFVYF---------GKGGVDRRVALDMLKPVLENPSLRKTGQNLKYDLLV 444 Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531 L +YGI + D ML SYVLD + H++ +A + LS T E++ K + I Sbjct: 445 LKKYGIDINPVAFDTMLASYVLDP-EAKHNLDDLALRHLSIKTTTYDELVADGKKKMSIL 503 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQI 590 + ++ ++A +++++ L+L + + KL+ EK LL + E ++ P++ V++ ME GI I Sbjct: 504 DVPPGELSDYACQDADLALRLQEVFKEKLLQEKDLLWLCENIEFPLVPVLATMEYHGISI 563 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D D LK+ +SK + L E I++ SG FNL SPKQL ILF L PSG TKTG + Sbjct: 564 DTDHLKKTETTVSKQIGQLSEKIFEASGRVFNLDSPKQLAHILFDILGLPSGKATKTG-F 622 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T Q LE + +P+ +++LE+R L K+++TY ++LP IN T ++HT ++ T T Sbjct: 623 STNVQVLEDL-APIHPVAQDLLEYRSLQKLRNTYIEALPKMINPLTGKLHTSFNQHVTAT 681 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769 GRL+S PNLQNIPI+T +G++IRRAFI S P L+SADYSQIELR+ A I+ L + Sbjct: 682 GRLSSSHPNLQNIPIRTLIGKEIRRAFIPSNPENLLLSADYSQIELRVAAEISGDEKLME 741 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F N DIH A IF N +++P+MRR AK +NF ++YGI PF L+ +L I R+EA Sbjct: 742 AFRNREDIHSATARTIF--NTTEITPEMRRKAKEVNFGVLYGIMPFGLSRRLNISRNEAK 799 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 + I Y ++PGI +++ + ++ GYV T+ GRR + ++NS +++ ERAA+N Sbjct: 800 NIIDTYTEKYPGIFNALQQIISDGKERGYVSTLLGRRRYIPDLNSRNKNMQKAAERAAMN 859 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE----ITTASQIIV 945 PIQG+AADI + AM L HK+ + MLLQ+HDEL+FE PE E T ++++ Sbjct: 860 TPIQGTAADIIKCAMNLCSTQLRLHKMKSVMLLQVHDELLFETPENEKHRLKTLVEEVMI 919 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++ L VP++V+ + NW E Sbjct: 920 DAAKRCGLHN----VPVEVDTGIGKNWLE 944 >gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] Length = 984 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 344/1004 (34%), Positives = 526/1004 (52%), Gaps = 72/1004 (7%) Query: 6 HLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIA-GFCNMLWKLLQNSRKESIASHF 61 LFL+DG + IYRAF+A PL + + + +IA G + L +LL + E +A Sbjct: 11 RLFLIDGYALIYRAFFALLQRPLSTSRGEN---TSIAWGIASFLKRLLNTHQPELLAW-- 65 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQ----LPLVRLATQAFGIPAIEIQGFEA 117 + D A TFR+E+YPDYKA R K+ + L L V A+ IP + GFEA Sbjct: 66 --VHDSGA-TFRDELYPDYKATREKLTDDLQADFDQGLQRVLQLLAAYDIPVLSAPGFEA 122 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-------TVKEEKIDIEHVIK 170 DD+I T + G+ V ++S DKD QLV P L + +V E + +E+ Sbjct: 123 DDVIGTMAARGVEAGYNVVVVSGDKDFQQLVRPGVWLLNPGRGGPASVDESWVGVENGSD 182 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 + G+PPE+++ A+ GD+ DN+PG+ GIG K A L+ +YG LENIL N I +K+ R Sbjct: 183 RLGVPPERVIDYLAIVGDTSDNVPGVKGIGEKGAIELITQYGPLENILANVENITKKRPR 242 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA- 289 E + +YA++ARLS++LV + DVP+ E L + N L + LEFT L+ V Sbjct: 243 EALQQYADSARLSKQLVTIHCDVPVPFESEKLTVGQPNTDALRALYLELEFTSLLKDVGG 302 Query: 290 ---------TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340 T AA++ P + + T+ S L+D Sbjct: 303 AVPVATSSGTGATSTAADVAPALPVPGRPAAPAV----------TLGESGVPVLADARYV 352 Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMD 400 L R++++ I+ ++ + D+ +L I + Sbjct: 353 TVDTVEALATLLTRVREVPYIAIDTETVIEPGAPFDVDALRSRL-----VGLSIAVAPGE 407 Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH--------TSQDSTGKNTLTKEILSY 452 A++ P A ++DD S + + D + + + + Sbjct: 408 AYY-LPFA------HRRDDGSGNLALLAGDTGTGIVGRRINAGAPEPVNLPPFDSDACAP 460 Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L+ E+ KI N KYD LVL G+ + G D ML SYVLD GR SH + +A + Sbjct: 461 LRAMLEDPSVTKIAQNAKYDLLVLRSSGVRVAGVGFDTMLASYVLDPGRRSHGLDLLALE 520 Query: 512 WLSYTRKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 L +T ++ K+ +P D ++++ E+ ++ ++L L P L LL + Sbjct: 521 QLGHTMTAYDTLVGKGKTQLPFDVAPVDTARDYSCEDVDITMRLRAKLEPMLAEHALLSL 580 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 ++ ++ P++ V+++ME GI ID D + A + +E+ IY +GE+FN++S + Sbjct: 581 FQEIEVPLVSVLAEMEWEGIAIDLDWFASLKARFAAERGRVEQAIYAEAGEEFNINSNPK 640 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 L ILF KL P KT TG T A L+++ + + ++E+R++ K++ TY D+L Sbjct: 641 LRAILFEKLGLPVKKKTATGP-STDASVLQELAEEGHVLPTLLMEYREIFKLEGTYIDAL 699 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748 P ++ R +R+HT YS + TGRL+S +PNLQNIPI+ +LG+ IRR F+ +L+SA Sbjct: 700 PRLVHPRDRRLHTSYSQTVSATGRLSSHDPNLQNIPIRRELGRDIRRGFVPREGWRLLSA 759 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELR+LAH++ F+ DIHR AA IFGV +E V+ +MR AKTINF+ Sbjct: 760 DYSQIELRVLAHLSADPAFVSAFKAGGDIHRQTAAIIFGVPLEDVTSEMRARAKTINFAT 819 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 IYG L+ QLRI +EA +I+ YF RF G+ ++++ R GYVET+F RR + Sbjct: 820 IYGQGAHALSRQLRITNAEAKAFIETYFERFAGVRGFLDQCVVDARARGYVETLFKRRRY 879 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 E+ +IR ER A NAPIQGSAAD+ + AMI+V +++ LA++MLLQ+HDEL Sbjct: 880 IPELKERNFNIRAFGERVAQNAPIQGSAADLIKIAMINVRNAIDAEGLASRMLLQVHDEL 939 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 VFE+P EE T S ++ ME A + L VPL V + + +W Sbjct: 940 VFELPVEEADTLSALVKREMEGAAV----LNVPLLVEMGLGTDW 979 >gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] Length = 959 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 349/996 (35%), Positives = 552/996 (55%), Gaps = 70/996 (7%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFLVD + I++ +YA P+ R G+ + + GF K L++ +K V Sbjct: 4 LFLVDAYALIFKYYYAFMGRPM--RNRAGMNTSVVFGFT----KFLRDIQKREHPDLLGV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD +FR EI+P+YKANR + PE +L +P V+ +A IP +E+ G+EADD+I T Sbjct: 58 AFDPKGGSFRREIFPEYKANRAETPEDILLSVPYVKRIVEAMCIPVLEVPGYEADDVIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIP-PEKM 179 + + G+ V +++ DKD QLV +Y + I+I E + +K+GI P+ + Sbjct: 118 LAHKGVEAGYDVFMVTPDKDYGQLVCDNCKIYKQKGNDGIEIVGREAIREKYGIENPQLV 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GD+ DNIPG+PGIG KTA L+QE+G +ENIL NA RIK ++ E I E+ + Sbjct: 178 RDILALWGDASDNIPGVPGIGEKTACKLVQEWGTVENILQNADRIKSRQG-EKIAEWGDK 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 L+++L + DVPI E L + C PR I LKAL F +L R+ + A Sbjct: 237 LLLAKRLTTICLDVPIDFREEDLTV--C-APR-IDELKAL-FAELDFRMFLNDLTNLAPA 291 Query: 300 EPV--------------VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345 EP+ V + K A+ + D S S SD+ S + EQ Sbjct: 292 EPLPEGPRQAAQTQLAEVARAKSAAAKKAALAGQGDLFAPAADSGESPASDRESASSDEQ 351 Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405 T + ++ + +YT + N ++++ ++++ F T D F+ + Sbjct: 352 TAES------EEFATAQTTPHAYTIVRNAQELEAVLREVAACPEFCFDTETTGFDIFNDR 405 Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465 + ++++ E +I + + T E + ++ F + KI Sbjct: 406 IVGLSLAVR--------PYEAWYIPFN----------ESNTAEYAALIRPLFADGKIAKI 447 Query: 466 GHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL 521 G NIK+D +VL R G+ +RG D M++ Y+LD S H++ ++A ++L+Y + ++ Sbjct: 448 GQNIKFDLMVLARLGVEIRGRLYDTMILHYLLDP-ESRHNMDALAMRYLNYRPISITSLI 506 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + +D IS +V E+A E+++V L+L +L PK+ L +Y +++PMI V++ Sbjct: 507 GKGARQLTMDMISLERVAEYAAEDADVTLRLKQVLWPKVEELDLAGLYLEIEEPMIAVLA 566 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFP 640 ++E+ G++ID + L + + E++K L LE +I L+ E N++S +QLG++LF KL+ Sbjct: 567 EIEMAGVRIDSEALAEYAVELNKTLNDLEGDIRRLADEPSLNVNSARQLGEVLFGKLRIA 626 Query: 641 SGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 K TKT Q+ T + L Q I+ ILE+R + K+ STY ++LP +N T ++ Sbjct: 627 EKPKMTKTKQFSTEEEYL-QTFAHKYEIVDKILEYRGVKKLLSTYVEALPLLVNPVTGKI 685 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRIL 758 HT ++ A T TGRL+S PNLQNIP++ +LG++IR+AFI S L+SADYSQ+ELR++ Sbjct: 686 HTSFNQAVTATGRLSSTNPNLQNIPVRDELGRRIRKAFIPSDDEHLLLSADYSQVELRLM 745 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH++ L FE+ D+H AA +FG + +V RR AKT NF IIYGIS F L+ Sbjct: 746 AHLSGDESLIAAFEHGEDVHAATAARLFGKEVAEVDSDERRKAKTANFGIIYGISAFGLS 805 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 +L IPR EA + I+ YF +P + EY+++ +++GYV TIFGRR + ++I S + Sbjct: 806 QRLDIPRKEAKEIIEGYFASYPKVKEYMDRVVEEAKRDGYVSTIFGRRRYLNDIASRNAV 865 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 R + ER A+NAPIQGSAADI + AMI V + + + +K++LQ+HDELV ++ E Sbjct: 866 ARGLAERNAVNAPIQGSAADIMKIAMIRVSRRFREEGIRSKVILQVHDELVVDMLRSEQE 925 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I+ +ME A LRV L V+ V +NW E Sbjct: 926 RVIAIVTEAMESAA----ALRVRLVVDCGVGDNWLE 957 >gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47] Length = 975 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 339/979 (34%), Positives = 516/979 (52%), Gaps = 93/979 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + +VD S IY+ F+A P ++ GLPV+A+ GF + +LL SRK + FD Sbjct: 78 VVVVDAHSLIYQVFHALPPMTSTG-GLPVSAVYGFVGDMLELL--SRKNP--DYLIAAFD 132 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 VTFRNE+YP+YKANR +P+ L Q+PL+R A A GI IE GFEADD++AT Sbjct: 133 KSEVTFRNELYPEYKANRDSMPDELRQQIPLIRQAIDAMGIGIIEQSGFEADDLLATVAA 192 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 E+ G ++++DKD QL+S T +Y+ K+++ID + WGI P+++V QAL Sbjct: 193 KVEEAGGRCLVVTSDKDCRQLISEQTKIYNIRKDQEIDAAELFGLWGIRPDQVVDYQALV 252 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD +DN+PGI IG K A LL+ + LE IL NA I KKR+EN++ R+ Sbjct: 253 GDPVDNVPGISLIGPKIAQQLLETHETLEEILNNAESISGKKRKENLMN-------GREA 305 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 M+ + L+ + +E NR T AA++E V Sbjct: 306 AMMSRE-------------------LVELKRDVESPIPWNRCVRT----AADLERV---- 338 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINND 366 D ++ F L + +++ + P + P Sbjct: 339 ----------------DALLQEFGFRRLRSRAAELLGGEAPAE---------ESKPAWES 373 Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I N +++ +E I T+T + IS Q + ++ Sbjct: 374 RYQTITNESELKALA--VELAKQTVLAIDTETTSTHARGCDLVGISIAWQPGEAAY---- 427 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 + V N L ++ L+ E+ K+GHN+K+D +VL G+ + G Sbjct: 428 ----IPVRAPDGDPAINELI--VIETLRDVLESSAIEKVGHNLKFDVIVLRSAGVQLGGI 481 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 D M+ Y+L+SG +H + +AQ+ L +T K+++ + K I +D++ V +A Sbjct: 482 TMDTMVADYLLNSGGRNHGLDDLAQRRLDHTNLSIKDLIGTGKKQITMDQVPVDDVSPYA 541 Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E+ +V ++L LR +L L +++ ++ P+ +V+++ME GI ++ D L ++S Sbjct: 542 CEDVDVPIRLAPTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERF 601 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 K++ L ++ +G +FNL SPKQLG +LF +L P KTKTG T A L Q+ Sbjct: 602 DKDIADLRALVFSAAGHEFNLDSPKQLGVVLFEELGLPVIKKTKTG-VSTDADVLSQLAV 660 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 ++ I +++L++RQ +K+K+TY D+LP I +T RVHT + TGRL+S EPNLQN Sbjct: 661 -NHEIAEHVLQYRQATKLKNTYIDALPQLICDKTGRVHTSFRQDVAATGRLSSSEPNLQN 719 Query: 723 IPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 IPI+T+ G+ IR AF + L+ ADYSQIELR+LAH + L + + DIH V Sbjct: 720 IPIRTEQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSGDEALIGAYHDDADIHTRV 779 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G+ +V+ +RR AKTINF I+YG SPF LA L I EA DYI+ YF R+ G Sbjct: 780 AAEVNGIEESEVTSDLRRIAKTINFGIVYGQSPFGLAKTLGISNDEARDYIELYFQRYSG 839 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS----PKSSIRNIN--ERAAINAPIQGS 895 + ++ T R GYV T+ GRR + P+S R++ ER AIN PIQG+ Sbjct: 840 VEAFMMDTLARCRNEGYVATMLGRRREIKGVRDLAKLPESKRRSLTEPERIAINMPIQGT 899 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD+ + AM+ VH+ L+ L ++LLQIHDEL+ E P+EE+ S +I +M Sbjct: 900 AADLIKLAMLRVHEQLKQSDLQARLLLQIHDELLLESPDEELDALSDMIREAMTSV---- 955 Query: 956 INLRVPLKVNIKVSNNWQE 974 + L VPLKV++ W + Sbjct: 956 MELDVPLKVDVAHGRTWAD 974 >gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] Length = 957 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 335/977 (34%), Positives = 530/977 (54%), Gaps = 58/977 (5%) Query: 8 FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 +L+D +++ F+A P ++ G P NA+ GFC L L++ + + D Sbjct: 23 WLIDVFGVMFQVFHAIPPMTSPA-GQPTNAVFGFCRDLLWLIEKQKP----TWLICAMDS 77 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 P R YP+YKANR ++PE L PQ+PL++ +AFG+P I+ G+EADD++A+ Sbjct: 78 PGPGIRESWYPEYKANRTEMPEDLRPQIPLLKEVFEAFGLPIIQQDGWEADDVLASLAAQ 137 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 + G V I++ DKD QL++P +Y+ K + ++++WGI P+++V Q L G Sbjct: 138 FARHGTDVAIVTNDKDARQLLTPQIQIYNLRKMTWFNEASLLEEWGIRPDQVVDFQGLVG 197 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247 D++DN+PG+P +G K AA LLQ++ LE +L +A + K +EN+ +AE ARLS+KLV Sbjct: 198 DAVDNVPGVPLVGPKKAAALLQQFETLEGVLAHADQAPGAKLKENLKNFAEQARLSQKLV 257 Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN---RVATTYDCDAANIEPVVL 304 L T++ + E + +L + + L F KL++ RV AA+ Sbjct: 258 RLNTELQLDFDPEAGRHFRPDVEKLQALFRRLGFRKLVDEAARVLGQVPSSAAS------ 311 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 TT+N + ++ + S FS+ + T P K L+RL++ + Sbjct: 312 ---TTQNSATTTPS-LNDGNPAENSLFSAPENNTV------VPSKP-LQRLERTWE---- 356 Query: 365 NDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 +VNT + + ++L + + T +D + + AI+ Q Sbjct: 357 ------MVNTPEGLAALSRQLPLLTQICIDLETTGLDPLRDEIVGWAIAWAAQHGQPGRA 410 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI-- 481 V + D T ++ LK EN I N+K+D L + + GI Sbjct: 411 VYLPVLGPPGSVLLDGTA-------VVQTLKPILENPQCQLINQNVKFDLLAMRKVGIRP 463 Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538 + G D M+ Y+LD+G SH++ + QK+LS ++L S K+ +++I +V Sbjct: 464 ATIGL-DTMVGDYLLDAGARSHNLEVLGQKYLSAATIPISDLLGSGKNQKTMNQIEIERV 522 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 E+A E++ +++++ ++ +L L +Y+ ++KP+I V++ ME GI++D L++ Sbjct: 523 AEYATEDAELVVRMAPIIESQLQEAGLWKLYDEVEKPLIPVLADMEFKGIKVDVPELERQ 582 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S E+S L L I++L+G +FN+ SP QL ILF +LK P KTKTG +T Q++ Sbjct: 583 SQELSITLARLMSEIHELAGREFNIDSPMQLRKILFEELKLPVQKKTKTG--PSTDQEVL 640 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ +P+ I E R L+K+K TY D+LP ++ ++ R+HT ++ TGRL+S +P Sbjct: 641 ELLAPLHPLPAKITEHRHLTKLKGTYLDALPLLVHPQSGRIHTSFNQVVAATGRLSSSDP 700 Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 NLQNIPI+T G +IRRAF+S P +L+ ADYSQIELR+LAH ++ L FE+ DI Sbjct: 701 NLQNIPIRTPEGSRIRRAFVSCDPEWRLVCADYSQIELRMLAHFSQDPALVSAFEHGEDI 760 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR+VAA++ V +E V+ MRR AK +NF ++YG SP+ L+ L I R A +I YF Sbjct: 761 HRLVAAQVHQVALEDVTSDMRRIAKAVNFGVMYGQSPYGLSAALGISREAATTFIDEYFT 820 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN--ERAAINAPIQGS 895 R+ G+ ++E + GY TI GRR + + P+ RN N ER IN IQGS Sbjct: 821 RYAGVTTFMENVLDECLATGYARTILGRRRPIEGVRGPRERNRNRNMAERTGINTVIQGS 880 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD+ + AMI VH LE ++LLQIHDELV E P ++ M KA LP Sbjct: 881 AADLIKMAMIRVHHRLERENHPGQLLLQIHDELVLEAPAHLAEELGALVSEEMTKA-LP- 938 Query: 956 INLRVPLKVNIKVSNNW 972 L VPL+V++ + NW Sbjct: 939 --LDVPLEVDVAIGTNW 953 >gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63] gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08] gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07] gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08] gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07] Length = 882 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 339/980 (34%), Positives = 532/980 (54%), Gaps = 110/980 (11%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E L ++DG+S I RAFYA P ++ K +GL NAI GF ML+K++ + +H +V Sbjct: 2 EKKLIIIDGNSIINRAFYALPEMNNK-EGLKTNAIYGFTTMLFKMIDIYK----PTHISV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A TFR+ Y +YKA R +P+ L QL ++ F I +EI G+EADDII T Sbjct: 57 AFDRKAPTFRHLEYKEYKAGRKGMPDELAEQLQPLKDLLDKFKINRLEIDGYEADDIIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 + AE +G+ V I++ DKD +QL S T T K E+ + VI+K+ + P + Sbjct: 117 VSKKAEDDGYKVYIVTGDKDAIQLASDNTTTLITKKGVGEVEEYNFNSVIEKYEMTPTQF 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+ L GD DNIPG+PGIG KT L++E+ ++EN+L N ++K +++ I E E Sbjct: 177 IDLKGLMGDKSDNIPGVPGIGEKTGIKLIKEFSSIENLLENTDKLKGSVKKK-IEENKEI 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A S++L + DVPI + LE +I D + L+ + FT L Sbjct: 236 AIQSKRLATIIRDVPIEVDLESMIFGDYDKDELLDKFRYFGFTSL--------------- 280 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 S L D ++EQ +K+ Sbjct: 281 -------------------------------LSRLVDLVDSNDTEQVEEKI--------- 300 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 +I+ KDI++++ ++ G K + + I I IS +K Sbjct: 301 ----------EILKLKDIEKFIDEVNEKGQVILKTVRGQGNILEKNIIYIFISVDGEK-- 348 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 ++D N ++K L F N K G+N+K D + L Y Sbjct: 349 ------IYYVD-----------SNEVSK-----LDSIFSNNEIKKYGYNLKDDYISLKPY 386 Query: 480 GISMRG-FEDIMLMSYVLDSGRS-SHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534 I++ + DI + Y++DS S S+D ++IA K+LS +++E+L S + + Sbjct: 387 NINLENMYFDITISEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLE 446 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + E+ + + + ++ L+ + ++ ++ P+++V+ ME GI++D+ + Sbjct: 447 FEDLAEYMGQIICTVKETVPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSI 506 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L ++S E + + +LE+ IY+LSGE FN++SPKQLG ILF KL+ P KTKTG + T A Sbjct: 507 LDELSVEFKEIIATLEKEIYELSGEPFNINSPKQLGVILFEKLELPIIKKTKTG-YSTNA 565 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE++ +PII I E+RQ+ K+ STY + L N IN + R+H+ ++ T TGR++ Sbjct: 566 DVLEKLR-DKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQTITTTGRIS 624 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S EPNLQNIPIK ++G+KIR+ FI+ KL+ ADYSQ+ELR+LAH+++ + + F++ Sbjct: 625 STEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHH 684 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH A+++F V +E V+ ++R AK +NF IIYG S F LA L IP +A +YI+ Sbjct: 685 EDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIES 744 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF ++ I E+++ T ++GY TI RR + EI S RN +R A+NAPIQG Sbjct: 745 YFAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQG 804 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 SAADI + AMI+VHK LE++ L +K++LQ+HDEL+ E ++EI +I+ ME A Sbjct: 805 SAADIIKIAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENA--- 861 Query: 955 KINLRVPLKVNIKVSNNWQE 974 +N+ V L V++ V ++W E Sbjct: 862 -VNIDVHLDVDLNVGSSWYE 880 >gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] Length = 954 Score = 539 bits (1388), Expect = e-150, Method: Compositional matrix adjust. Identities = 341/984 (34%), Positives = 533/984 (54%), Gaps = 82/984 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYRA+YA P ++ K G +AI GF N L +L K+ +H + Sbjct: 35 LFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAIMGFVNTLEDVL----KKENPTHIGI 88 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EADD+I T Sbjct: 89 AFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVSGYEADDVIGT 148 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGI-PPEK 178 A K G +++ DKD QLVS +Y +K + + + K+ I P + Sbjct: 149 LATEAGKRGITTYMMTPDKDYGQLVSENVFMYRPKYGDKEFEVMGVNEIKAKFDIESPSQ 208 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEY 236 ++ + L GD+ DNIPG PG+G KTA L+ ++G++EN+L N ++K K + EN Sbjct: 209 VIDMLGLMGDTADNIPGCPGVGEKTAQKLIAQFGSIENLLANTDQLKGAIKTKVEN---N 265 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E S+ L ++TDVPI++ +E L E + L + LEF L++R+ T A Sbjct: 266 REQITFSKFLATIKTDVPISLDMEALKREQPDEEELRKIFEELEFRTLLDRILKTEKKTA 325 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 A PV D+ F S + + P+ L RL+ Sbjct: 326 APSAPVQSDL------------------------FGFFSGENT-----DEPKNSNLTRLE 356 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 L + Y + + + I ++Q + T S T D ++ + ++ S + Sbjct: 357 DL------DFDYQLLDSEEKIDDFLQIIVTKDFFSLDTETTGTDPITAELVGMSFSFAEN 410 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + ++ + + + I+ LK ENE LKIG NIKYD LVL Sbjct: 411 --------QAFYVPVPANREE--------ALAIVKKLKPIIENEKTLKIGQNIKYDMLVL 454 Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPID 531 YG+ +RG D M+ YVL H + +A+ +L Y +E++ + K+ + Sbjct: 455 GNYGVEVRGPMFDTMIAHYVLQP-ELHHGMDYLAEVYLKYETIKIEELIGPKGKNQKNMR 513 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 +S + V ++A E+++V L+L +L +LI + +++ ++ P++ V++ ME G++ID Sbjct: 514 DLSPTSVYKYACEDADVTLKLKKVLEKELIENNVNELFQTIEMPLVPVLAYMERNGVRID 573 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQW 650 + LK+ S + + LEE ++ L+G +FN++SPKQ+G++LF +LK AK TKTGQ+ Sbjct: 574 TEALKETSQHFTARMKQLEEEVHQLAGMEFNIASPKQVGEVLFDRLKITDKAKKTKTGQY 633 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T+ + LE + G + I+ ILE R L K+ TY D+LP IN +T +HT ++ T T Sbjct: 634 VTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPLLINPKTGHIHTSFNQTVTAT 692 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S PNLQNIPI+ + G++IRRAFI + SADYSQIELRI+AH++ + + Sbjct: 693 GRLSSSNPNLQNIPIRNEDGKEIRRAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEA 752 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+ DIH AA+I+ +E V+ + R AKT NF IIYGIS F LA +L I R EA + Sbjct: 753 FQKGQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIYGISVFGLAERLNIERKEAKE 812 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 I YF +P + EY++++ ++ GY+ETIF R+ + +INS + +R ER AINA Sbjct: 813 LIDGYFENYPHVKEYMDQSIRLAQEKGYIETIFKRKRYLPDINSRNAVVRGYAERNAINA 872 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI + AMI ++K + + +KM+LQ+HDEL F V EE I++ ME Sbjct: 873 PIQGSAADIIKVAMIRIYKRFMEEGIRSKMILQVHDELNFSVVPEEKEKVQHIVISEMEA 932 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A ++VPL+ + NW E Sbjct: 933 AY----KMKVPLQADCDWGKNWLE 952 >gi|325281339|ref|YP_004253881.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712] gi|324313148|gb|ADY33701.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712] Length = 896 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 349/989 (35%), Positives = 546/989 (55%), Gaps = 110/989 (11%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M LFL+D + IYR++YA P ++ G+ +A GFCN L +LL+ + Sbjct: 1 MSDPKTLFLLDAYALIYRSYYAFINNPRITTT--GINTSATFGFCNFLIELLELEK---- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AVIFD TFR+E+Y YKA RP +PE L +P ++ GI ++ G+EA Sbjct: 55 PTHIAVIFDPEGPTFRHEMYTPYKAQRPPMPEDLRKSIPYIKKIIAGLGISCLDAPGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWG 173 DD I T AEKEG+ V +I+ DKD QLVS +Y K E I V+ +G Sbjct: 115 DDFIGTLAKRAEKEGYTVYMITPDKDYAQLVSEKVFMYKPGRSGNKSEVWGIPEVLDHFG 174 Query: 174 IPP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 I ++++ + L GD+ DN+PG GIG K+AA L+ +YG+++ I + +K K+R+N Sbjct: 175 IERVDQVIDILGLMGDTADNVPGCSGIGPKSAAALVYKYGDIDGIYAHIDELK-GKQRQN 233 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 +L+ T LSR LV + T+VP I E L + + L K LE L+ RV Sbjct: 234 LLDCQPTVHLSRTLVTICTEVPTDITPEDLEKKHIDVKILDPIFKELELFSLVKRV---- 289 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 + T+I+ DT+ Sbjct: 290 -----------------------LNTDIEEDTS--------------------------- 299 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 +KLS + SYT +++D +QKLE + ++ ++S P + S Sbjct: 300 ---EKLSDIKV---SYTD--HSQDPASLLQKLEEADLYALYVVFKNGTLYNSWPTHLCFS 351 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 T E +I+L KN + IL + + FEN++ + I ++K D Sbjct: 352 TKLH--------EVSYINLP-------NDKNKALEIILQF-QAIFENKNKILISADVKND 395 Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSS 527 + L R GI ++ DI + YVL SHD+ +A ++L+Y ++KE ++ + Sbjct: 396 IIWLKRAGIKLKNDIFDIKIAHYVLHPD-ISHDLGRVALEYLNYKLSGSKKE---DQQLT 451 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 + D+ + ++ + A E ++VI QL L L LL +Y ++ P++ V++ ME G Sbjct: 452 LQFDEEAGTEDNDFA-EKTDVIFQLHEKLCDDLQQTGLLALYNNIEMPLVFVLADMEYEG 510 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTK 646 + ID + L+ +S+E+ + + +E+ IY+L+ ++FN+SSPKQLG++LF KLK S KTK Sbjct: 511 VSIDCNELQSISSELKERIDIIEKEIYELAHQEFNISSPKQLGEVLFDKLKIDSNHKKTK 570 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 +GQ+ T+ Q L ++ ++PII IL++R L K+ +TYA++LP+ I+ T ++HT ++ A Sbjct: 571 SGQYSTSEQVLVKLE-DEHPIINKILDYRGLKKLLTTYAEALPSFIDPGTGKIHTHFNQA 629 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKIT 765 TGRL+SL PNLQNIPI+T+ G+KIR+AF++ L SADYSQ+ELR++AH+++ Sbjct: 630 EAATGRLSSLNPNLQNIPIRTEEGRKIRKAFVTGNDDYLFFSADYSQVELRLMAHLSQDK 689 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F + +D+H A++I+ V +E+V+P+MRR AKT NF IIYGIS + LA +L I R Sbjct: 690 ELIHAFNHGIDVHTATASKIYHVTLEEVTPEMRRRAKTANFGIIYGISAWGLAERLHISR 749 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 E + I YF +PG+ +Y+E++ R+ +VETI GRR + +INS + +R + ER Sbjct: 750 KEGKELIDGYFDLYPGVKKYMEESVEKARKKEFVETIMGRRRYLRDINSRNAVVRGMAER 809 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AINAPIQGSAADI + AMI + K +++ L ++M++Q+HDEL F+ + E ++ Sbjct: 810 NAINAPIQGSAADIIKMAMICIQKRIQEEGLMSRMIIQVHDELNFKCHKSEQYLLKSLVT 869 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME I L VPL V+ NNW E Sbjct: 870 NCMEHV----IKLSVPLTVSTGFGNNWYE 894 >gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L] gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L] Length = 909 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 352/984 (35%), Positives = 540/984 (54%), Gaps = 114/984 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S I RAF+A P + DGL NAI GF M++K++ R +H +V FD Sbjct: 22 LLLIDGNSIINRAFFALPPMDN-GDGLHTNAIYGFLTMMFKMIDLYR----PTHISVAFD 76 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR + Y YKA R K+ L QL ++ + EI G+EADDI+ T + Sbjct: 77 VKAPTFRYKSYESYKAGRKKMMPELASQLGPMKEVLDVLNVDRKEIAGYEADDILGTVSL 136 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AEK G+ V +++ D+D +QL S T + T K E+ + E V +++ + P++ + L Sbjct: 137 DAEKAGYKVYVVTGDRDAIQLASDMTTVLITKKGVGEVEEYNREGVYERYQLSPDQFIDL 196 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYAETA 240 + L GD DNIPGIPGIG KT LL EYG++E +L N ++K QKK+ E E E+A Sbjct: 197 KGLMGDKSDNIPGIPGIGEKTGIKLLLEYGSVEGVLSNVDKLKGAQKKKVE---ENMESA 253 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 R+S+ L + DVPI LE ++ D R+I + L+F LI++V+ Sbjct: 254 RMSKDLATIMRDVPIDFDLESMVFGDFETSRVIEKFQELKFNSLISKVS----------- 302 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 D++ E+K E EID I+ Q +++D F+ R+++ S+ Sbjct: 303 ----DLSGIEDK----EREID---LIRLDQ-DNIAD--------------FIARVKEGSE 336 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 I K I + + I++ ++T D+ D Sbjct: 337 LYI-----------------------------KTIARSGNILEKNIISMYLATSDESDKA 367 Query: 421 S-FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 +K+ ++D + S + KEI+ E+E KIG NIK D + L Y Sbjct: 368 DPYKI--YYMDKELAES--------MPKEIVD----LIEDEDIEKIGCNIKSDYINLRPY 413 Query: 480 GISMR--GFEDIMLMSYVLDSGRS-SHDIASIAQKWL---SYTRKEILKSRKSSIPIDKI 533 GI + GF DI + Y++DS S S+D IA K++ + +++L + + I Sbjct: 414 GIRLGKIGF-DISIAEYIIDSKTSTSYDFDVIASKYIYKKMTSEEDLLGKGAKAKKYEDI 472 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLI---VEKLLHVYERLDKPMIDVVSQMEITGIQI 590 + + AI N + + +R + +EKLL+ E P+I+V+ ME GI + Sbjct: 473 EKEDLDKFAIGIMNTLSGVVPKMRQIIKDDDMEKLLYDVE---IPLIEVLGDMEYIGIHV 529 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D+ L ++ + + LE IYD+SGEKFN++SPKQLG ILF KL+ P KTKTG + Sbjct: 530 DKKTLDELGVLFNDRIKYLETKIYDISGEKFNINSPKQLGLILFEKLELPVIKKTKTG-Y 588 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T A+ LE++ +PII I ++R + K+KSTY + + N IN R+H+ ++ A T Sbjct: 589 STNAEVLEKLR-DKHPIIDMITDYRTVVKLKSTYVEGINNLINPLDGRIHSSFNQAIATT 647 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GR++S +PN+QNIP++TDLG+++RR F++ KL+ ADYSQ+ELR+LA ++ + + Sbjct: 648 GRISSTDPNMQNIPVRTDLGRQLRRVFVAGQGSKLVDADYSQVELRVLADMSGDEDMIEA 707 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+ +DIHR A+++FGV ++VS ++R AK +NF IIYG S F LA L I ++A + Sbjct: 708 FDRGVDIHRNTASQVFGVPFDEVSAELRSAAKAVNFGIIYGKSDFGLAKDLDISIAKAKE 767 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI+ YF RFP I +++ + + GY TIFGRR + EI S +N RAA+NA Sbjct: 768 YIENYFARFPKIKGFMDHIVSDAEEKGYSTTIFGRRRYIPEIKSSNFVEKNRGIRAAMNA 827 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI + AM++VH LE+ L + ++LQ+HDEL+ E P EE+ ++ ME Sbjct: 828 PIQGSAADIIKIAMVNVHNRLEEEGLKSNLILQVHDELIVESPIEEVERVRVLLKEEMEN 887 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A +NL+V L V++ V ++W E Sbjct: 888 A----VNLKVNLDVDLNVGDSWYE 907 >gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16] gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16] Length = 941 Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust. Identities = 348/995 (34%), Positives = 543/995 (54%), Gaps = 83/995 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + + LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 7 MNQNSKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD P TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 61 PTHIGVAFDPPGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIKAYRIPILEVAGYEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG 173 DD+I T A +G +++ DKD QLV+ +Y +K + +E V K+ Sbjct: 121 DDVIGTLATEAGNQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGVEQVKAKFD 180 Query: 174 I-PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 I P +++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + Sbjct: 181 IQSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK- 239 Query: 233 ILEYAETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 ET R S+ L ++ DVPI + + L+ E + L + LEF L+ R+ Sbjct: 240 ----VETNREMIIFSKFLATIKVDVPIRLDMNSLVREQADEDTLRKIFEELEFRTLMERI 295 Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348 + +++ P+ + EN + Q + + T +E+ + Sbjct: 296 ---FKKESSPASPIAGTLFNQENGPV---------------QGNLFEEFTPDYTNEE--K 335 Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408 K LE L LS Y I + + ++KL T + T D ++ + Sbjct: 336 KSNLESLNSLSY------DYQLIDTEEKRNEIIKKLLTSEILALDTETTGTDPMDAELVG 389 Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKI 465 ++ S + + ++ + KE + +++F F+NE LK+ Sbjct: 390 MSFSITEN--------QAFYVPVPAER-----------KEAIKIVREFEPVFKNEKSLKV 430 Query: 466 GHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL 521 G NIKYD LVL YGI +RG D M+ YVL H++ +A+ +L Y +E++ Sbjct: 431 GQNIKYDMLVLQNYGIEVRGKLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELI 489 Query: 522 KSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + K + +S +V +A E+++V L+L +L +L ++ ++ P++ V+ Sbjct: 490 GPKGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEIEMPLVPVL 549 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 +E G+++D + LKQ S + L S+E+ IY L+ +FN++SPKQ+G+ILF KLK Sbjct: 550 VNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEGEFNIASPKQVGEILFDKLKIV 609 Query: 641 SGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 AK TKTGQ+ T+ + LE + + II ILE+R L K+ STY D+LP IN +T R+ Sbjct: 610 EKAKKTKTGQYVTSEEVLESLR-NKHDIIGKILEYRGLKKLLSTYIDALPQLINPKTGRI 668 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 HT ++ T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIELRI+A Sbjct: 669 HTSFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMA 728 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+++ + F + DIH AA+I+ V+I++V+ MRR AKT NF IIYGIS F LA Sbjct: 729 HLSEDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAE 788 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 ++ + R EA + I YF +P + Y++K+ R++GYVETIF R+ +INS + + Sbjct: 789 RMNVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVV 848 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AINAPIQGSAADI + AM +++ + L KM+LQ+HDEL F VP +E Sbjct: 849 RGYAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEI 908 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q+++ MEKA + VPLK + NW E Sbjct: 909 VEQVVIEEMEKAY----RMHVPLKADCGWGTNWLE 939 >gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46] gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46] Length = 935 Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust. Identities = 350/993 (35%), Positives = 544/993 (54%), Gaps = 79/993 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + + LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MNQNSKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD P TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPPGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIKAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG 173 DD+I T A +G +++ DKD QLV+ +Y +K + +E V K+ Sbjct: 115 DDVIGTLATEAGNQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGVEQVKAKFD 174 Query: 174 I-PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 I P +++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + Sbjct: 175 IQSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK- 233 Query: 233 ILEYAETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 ET R S+ L ++ DVPI + + L+ E + L + LEF L+ R+ Sbjct: 234 ----VETNREMIIFSKFLATIKVDVPIRLDMNSLVREQADEDTLRKIFEELEFRTLMERI 289 Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTP 347 + +++ P+ + EN ++ + F + D T++ Sbjct: 290 ---FKKESSPASPIAGTLFNQEN------------GPVQGNLFEEFTPDHTNE------E 328 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 +K LE L LS Y I + + ++KL T + T D ++ + Sbjct: 329 KKSNLESLNSLSY------DYQLIDTEEKRNEIIKKLLTSEILALDTETTGTDPMDAELV 382 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 ++ S + + +F V V ++ K I+ + F+NE LK+G Sbjct: 383 GMSFSITENQ---AFYV-------PVPAEREEAIK------IVREFEPVFKNEKSLKVGQ 426 Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 NIKYD LVL YGI +RG D M+ YVL H++ +A+ +L Y +E++ Sbjct: 427 NIKYDMLVLQNYGIEVRGKLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELIGP 485 Query: 524 R-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + K + +S +V +A E+++V L+L +L +L ++ ++ P++ V+ Sbjct: 486 KGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEIEMPLVPVLVN 545 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +E G+++D + LKQ S + L S+E+ IY L+ +FN++SPKQ+G+ILF KLK Sbjct: 546 IESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEGEFNIASPKQVGEILFDKLKIVEK 605 Query: 643 AK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 AK TKTGQ+ T+ + LE + + II ILE+R L K+ STY D+LP IN +T R+HT Sbjct: 606 AKKTKTGQYVTSEEVLESLR-NKHDIIGKILEYRGLKKLLSTYIDALPQLINPKTGRIHT 664 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 ++ T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIELRI+AH+ Sbjct: 665 SFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHL 724 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 ++ + F + DIH AA+I+ V+I++V+ MRR AKT NF IIYGIS F LA ++ Sbjct: 725 SEDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERM 784 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 + R EA + I YF +P + Y++K+ R++GYVETIF R+ +INS + +R Sbjct: 785 NVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRG 844 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER AINAPIQGSAADI + AM +++ + L KM+LQ+HDEL F VP +E Sbjct: 845 YAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEIVE 904 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q+++ MEKA + VPLK + NW E Sbjct: 905 QVVIEEMEKAY----RMHVPLKADCGWGTNWLE 933 >gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343] gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5] gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343] gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5] gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R] Length = 941 Score = 537 bits (1384), Expect = e-150, Method: Compositional matrix adjust. Identities = 350/993 (35%), Positives = 544/993 (54%), Gaps = 79/993 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + + LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 7 MNQNSKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD P TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 61 PTHIGVAFDPPGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIKAYRIPILEVAGYEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWG 173 DD+I T A +G +++ DKD QLV+ +Y +K + +E V K+ Sbjct: 121 DDVIGTLATEAGNQGITTYMMTPDKDYGQLVTDHVFMYRPKYGDKEFEVMGVEQVKAKFD 180 Query: 174 I-PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 I P +++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + Sbjct: 181 IQSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK- 239 Query: 233 ILEYAETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 ET R S+ L ++ DVPI + + L+ E + L + LEF L+ R+ Sbjct: 240 ----VETNREMIIFSKFLATIKVDVPIRLDMNSLVREQADEDTLRKIFEELEFRTLMERI 295 Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS-DQTSKINSEQTP 347 + +++ P+ + EN ++ + F + D T++ Sbjct: 296 ---FKKESSPASPIAGTLFNQEN------------GPVQGNLFEEFTPDHTNE------E 334 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 +K LE L LS Y I + + ++KL T + T D ++ + Sbjct: 335 KKSNLESLNSLSY------DYQLIDTEEKRNEIIKKLLTSEILALDTETTGTDPMDAELV 388 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 ++ S + + +F V V ++ K I+ + F+NE LK+G Sbjct: 389 GMSFSITENQ---AFYV-------PVPAEREEAIK------IVREFEPVFKNEKSLKVGQ 432 Query: 468 NIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKS 523 NIKYD LVL YGI +RG D M+ YVL H++ +A+ +L Y +E++ Sbjct: 433 NIKYDMLVLQNYGIEVRGKLFDTMVAHYVLQP-ELRHNMDYLAEIYLHYQTIHIEELIGP 491 Query: 524 R-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + K + +S +V +A E+++V L+L +L +L ++ ++ P++ V+ Sbjct: 492 KGKGQKNMRDLSPQEVYLYACEDADVTLKLKNILEQELKKNDAEKLFYEIEMPLVPVLVN 551 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +E G+++D + LKQ S + L S+E+ IY L+ +FN++SPKQ+G+ILF KLK Sbjct: 552 IESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTLAEGEFNIASPKQVGEILFDKLKIVEK 611 Query: 643 AK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 AK TKTGQ+ T+ + LE + + II ILE+R L K+ STY D+LP IN +T R+HT Sbjct: 612 AKKTKTGQYVTSEEVLESLR-NKHDIIGKILEYRGLKKLLSTYIDALPQLINPKTGRIHT 670 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 ++ T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIELRI+AH+ Sbjct: 671 SFNQTVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHL 730 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 ++ + F + DIH AA+I+ V+I++V+ MRR AKT NF IIYGIS F LA ++ Sbjct: 731 SEDKNMIDAFLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERM 790 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 + R EA + I YF +P + Y++K+ R++GYVETIF R+ +INS + +R Sbjct: 791 NVDRKEAKELIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRG 850 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER AINAPIQGSAADI + AM +++ + L KM+LQ+HDEL F VP +E Sbjct: 851 YAERNAINAPIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKEIVE 910 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q+++ MEKA + VPLK + NW E Sbjct: 911 QVVIEEMEKAY----RMHVPLKADCGWGTNWLE 939 >gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76] Length = 916 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 345/963 (35%), Positives = 517/963 (53%), Gaps = 76/963 (7%) Query: 31 DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEM 90 DG P A+ G NML +L R E + AV+FD FR++++ +YKA RP +P+ Sbjct: 9 DGAPTGALYGVLNMLRRL----RSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPMPDD 64 Query: 91 LLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146 L PQ LP LVRL G P + I EADD+I T + G V + + DKD+ Q Sbjct: 65 LRPQAEALPDLVRLT----GWPVLVIGQVEADDVIGTLAKQGAEHGLRVIVSTGDKDMAQ 120 Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206 LV L +T+ E +DIE V K+G+ P+++ AL GD +DN+PG+ G KTA Sbjct: 121 LVDERVTLVNTMSSETLDIEGVKAKFGVRPDQIRDYLALMGDKVDNVPGVEKCGPKTAVK 180 Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266 L+ YG+L ++ +AS IK K EN+ LS LV ++TDV + H L D Sbjct: 181 WLEAYGSLAGVMEHASEIK-GKVGENLQAALPQLPLSYDLVTIKTDVDL-----HAELSD 234 Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326 + + R + +V+D + E E + +T Sbjct: 235 G--------------IESLRRTTPKW-------AQLVVDFKRWGFRTWLKEAESNMNTGS 273 Query: 327 KTSQFSSLS-DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385 F S S + + +N+E + E+ + + P D Y + + KL Sbjct: 274 TDDLFGSDSIGEQAALNAE-----MPFEKQAEKATAPEKLD-YQAVTTEAQFAALLDKLS 327 Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNT 444 + T ++DA ++ + I+I+ F+ E ++I V S + + Sbjct: 328 RADTIGIDTETTSLDAMNASLVGISIA---------FQAGEAVYI--PVGHSLTAAPEQL 376 Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH 503 +++L LK N KIG N+KYD+ V YGI++ G D ML SY+++S H Sbjct: 377 DLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANYGIALNGIAGDAMLASYIIES-HLGH 435 Query: 504 DIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 + ++++WL T + + I ++ Q E+A ++++ L+L LR ++ Sbjct: 436 GLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQM 495 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 EK L +YE+++ P+ V+ +ME G+QID+ L + SAE+ L+ LE+ Y +G+ Sbjct: 496 D-EKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 554 Query: 621 FNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 FNL+SPKQL +ILF K+ P+ KT G T LEQ+ D P+ K IL+ R L+ Sbjct: 555 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQL-APDYPLPKIILQNRSLA 613 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 K+KSTY D LP I+ + RVHT Y+ A +TGRLAS PNLQNIPI+T+ G+K+RRAF Sbjct: 614 KLKSTYTDKLPEMISPKDGRVHTTYAQAVAITGRLASNNPNLQNIPIRTEEGRKVRRAFT 673 Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 +P ++SADYSQIELRI+AH++ L F+N D+HR AAE+FG E VS + R Sbjct: 674 APQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQR 733 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 R+AKTINF +IYG+ + LA L I A ++I RYF R+PG+ EY+++TK GY Sbjct: 734 RYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGY 793 Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE------ 912 VET+FGRR++ +I + ++ R ERAAINAP+QG+A+D+ +RAMI V + L Sbjct: 794 VETLFGRRLYLPDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASP 853 Query: 913 -DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 D L +K+++Q+HDELV EV E E+ + + M K + L VPL + V N Sbjct: 854 WDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAK--VDGGLLDVPLVAEVGVGEN 911 Query: 972 WQE 974 W+E Sbjct: 912 WEE 914 >gi|332828281|gb|EGK00993.1| hypothetical protein HMPREF9455_02782 [Dysgonomonas gadei ATCC BAA-286] Length = 931 Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust. Identities = 348/984 (35%), Positives = 537/984 (54%), Gaps = 73/984 (7%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA +P ++ K G +A+ GF N L +LL RKE+ +H AV Sbjct: 3 LFLLDAYALIYRSYYAFIKSPRVNSK--GQNTSAVFGFVNTLEELL---RKEN-PTHIAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD P TFR++ Y YKA R + PE + +PL++ A+ I +E+ +EADD+I T Sbjct: 57 AFDPPGGTFRHDAYELYKAQRQETPEDIRAAVPLIKEIIAAYNIKELEVARYEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----TVKEEKIDIEHVIKKWGIP-PEK 178 AEKE F V +++ DKD QL S +Y + +D + +++K+ + P + Sbjct: 117 IAKKAEKENFDVYMMTPDKDYGQLTSDHIFMYKPKFAGTGFDTLDAKAIMEKYELSSPGQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEY 236 M+ L L GD+ DNIPG PG+G KTA LL+EYG +EN+L + + +K K R E E Sbjct: 177 MIDLLGLMGDASDNIPGCPGVGPKTAQKLLEEYGTIENLLEHTADLKGTLKLRLE---EN 233 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E S+ L ++TDVPI ++ N +L + + LEF LINRV D Sbjct: 234 KEQIIFSKFLATIKTDVPIEFNKNEFKRQEINAEKLSNLFEELEFRTLINRVLKK---DG 290 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 PV I TT I+ F+ L + ++ + LQ Sbjct: 291 TPANPV--RITTTHE-------------AIQGDLFAELLPPKA-----ESADTVNYSGLQ 330 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 +L P +Y + +I + + + S F T +D S+ + ++ + + Sbjct: 331 ELKDIP---HTYHLVEKDDEIANLAKTIASQQSCCFDTETTGLDPNVSELVGMSFAFREG 387 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 E ++ + + K I+ + FFEN KIG NIKYD +VL Sbjct: 388 --------EAYYVPVPADFEK--------AKAIVEQFRPFFENGETEKIGQNIKYDIIVL 431 Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPID 531 +YGI +RG D M+ Y+++ H++ +A+ +L Y E++ SR K+ + + Sbjct: 432 KKYGIHVRGRLFDTMIAHYLINP-ELRHNMDYMAETYLKYKTIHIDELIGSRGKNQLNMR 490 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 + Q++++A E++++ L+L +L + + L + ++ P+I V++ ME TG+++D Sbjct: 491 SLRPDQIKDYACEDADITLKLKAILEKAIEKQDLGKLLYDIELPLIYVLADMEYTGVRLD 550 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQW 650 + L + S ++ L +E IY + ++FN++S KQ+G++LF KLK KTKTGQ+ Sbjct: 551 KTALAEYSKTLTLELQGIESEIYKAAEQEFNINSAKQVGEVLFDKLKIVEKPKKTKTGQY 610 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T+ + LE + + I+ ILE+R L K+ STY D+LP ++ ++HT Y+ T T Sbjct: 611 VTSEETLESMKDA-HSIVGKILEYRGLKKLLSTYIDALPLLVSPLDDKLHTSYNQTVTAT 669 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S PNLQNIPI+ G++IR+AFI+ SADYSQIELRI+AH+++ + Sbjct: 670 GRLSSSNPNLQNIPIRDAQGKEIRKAFIADEACIFFSADYSQIELRIMAHLSQDPTMIDA 729 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F + DIH AA+I+ + I +V+ MRR AKT NF IIYGIS F LA +L IPR EA + Sbjct: 730 FNSGEDIHAATAAKIYKIPISEVTGDMRRKAKTANFGIIYGISVFGLAERLSIPRGEAKE 789 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 I YF +P + EY++K+ + R N YVET+FGR+ + +INS +++R ER AINA Sbjct: 790 LIDGYFATYPKVKEYMDKSISVARTNNYVETVFGRKRYLPDINSRNTTVRGYAERNAINA 849 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI + AM + E + +KM+LQ+HDEL F V E+ +I++ ME Sbjct: 850 PIQGSAADIIKVAMNRIFDRFERENIKSKMILQVHDELNFNVESNELDKVQKIVIEEMEN 909 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A L VPLK + NW E Sbjct: 910 A----YKLVVPLKADCGKGKNWLE 929 >gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355] Length = 908 Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust. Identities = 344/956 (35%), Positives = 517/956 (54%), Gaps = 70/956 (7%) Query: 31 DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEM 90 DG P A+ G NML +L R E + AV+FD FR++++ +YKA RP +P+ Sbjct: 9 DGAPTGALYGVLNMLRRL----RSEYPHDYCAVVFDAKGKNFRHQMFEEYKATRPPMPDD 64 Query: 91 LLPQ---LP-LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQ 146 L PQ LP LVRL G P + I EADD+I T + G V + + DKD+ Q Sbjct: 65 LRPQAEALPDLVRLT----GWPVLVIGQVEADDVIGTLAKQGAEHGLRVIVSTGDKDMAQ 120 Query: 147 LVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206 LV L +T+ E +DIE V K+G+ P+++ AL GD +DN+PG+ G KTA Sbjct: 121 LVDERVTLVNTMSGETLDIEGVKAKFGVRPDQIRDYLALMGDKVDNVPGVEKCGPKTAVK 180 Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266 L+ YG+L+ ++ +AS IK K EN+ LS LV ++TDV + H L D Sbjct: 181 WLEAYGSLQGVMEHASEIK-GKVGENLRAALPRLPLSYDLVTIKTDVDL-----HAELSD 234 Query: 267 CNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTI 326 + + R A + +V+D + E E + +T Sbjct: 235 G--------------IESLRRTAPKW-------AQLVVDFKRWGFRTWLKEAESNMNTGS 273 Query: 327 KTSQFSSLS-DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385 F S S + + +N+E +K + +K + P D Y + + KL Sbjct: 274 TDDVFGSDSIGEQAALNAEMPSEK----QAEKATA-PERLD-YQAVTTEAQFAALLDKLS 327 Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNT 444 + T ++DA ++ + I+I+ F+ E ++I V S + + Sbjct: 328 RANTIGIDTETTSLDAMNASLVGISIA---------FQAGEAVYI--PVGHSLTAAPEQL 376 Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH 503 +++L LK N KIG N+KYD+ V YGI++ G D ML SY+++S H Sbjct: 377 DLQDVLGRLKPHLGNPALKKIGQNLKYDQHVFANYGIALNGIAGDAMLASYIIES-HLGH 435 Query: 504 DIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 + ++++WL T + + I ++ Q E+A ++++ L+L LR ++ Sbjct: 436 GLDELSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHLRAQM 495 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 EK L +YE+++ P+ V+ +ME G+QID+ L + SAE+ L+ LE+ Y + + Sbjct: 496 D-EKQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAADQP 554 Query: 621 FNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 FNL+SPKQL +ILF K+ P+ KT G T LEQ+ D P+ K IL+ R L+ Sbjct: 555 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQL-APDYPLPKIILQNRSLA 613 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 K+KSTY D LP I+ + RVHT Y+ A +TGRLAS PNLQNIPI+T G+++RRAF Sbjct: 614 KLKSTYTDKLPEMISPKDGRVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFT 673 Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 +P ++SADYSQIELRI+AH++ L F+N D+HR AAE+FG E VS + R Sbjct: 674 APQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQR 733 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 R+AKTINF +IYG+ + LA L I A ++I RYF R+PG+ EY+++TK GY Sbjct: 734 RYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGY 793 Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 VET+FGRR++ +I + ++ R ERAAINAP+QG+A+D+ +RAMI V L D + + Sbjct: 794 VETLFGRRLYLPDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVRNCLSD-GIGS 852 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 K+++Q+HDELV EV E E+ + + M K + L VPL + V NW+E Sbjct: 853 KLVMQVHDELVLEVVETELDFVKEKLPQIMAK--VDGGLLDVPLVAEVGVGENWEE 906 >gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9] gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9] Length = 908 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 350/977 (35%), Positives = 530/977 (54%), Gaps = 84/977 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSSF+YRA +A P L R DG P AI G NM+ + ++ S + A +FD Sbjct: 5 LLLVDGSSFLYRAHFAMPNL-RSPDGEPSGAIFGLINMM----KRTQIVSKPDYIACVFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+E+Y +YK++RP +P+ + Q+ + A +A G I G EADDIIAT Sbjct: 60 APGRTFRHELYTEYKSHRPPMPDDMRTQIEPIHQAIEALGWTIIMQSGVEADDIIATIAD 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + I ++DKD+ QLV + T KEE +D V++K+G+ P++++ L Sbjct: 120 FAINQNIKCVIATSDKDIAQLVDDNISII-TGKEEILDSNGVLEKYGVRPDQIIDYLMLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET--ARLSR 244 GD+ DNIPG+ +G KTA L E+G+L EN+L+ A + ++++ Sbjct: 179 GDTSDNIPGVDKVGPKTATKWLNEFGSL----------------ENLLKNAGSLKGKVAQ 222 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 L+ ++ +T L V DCD + + Sbjct: 223 NLIEAQSQFDLTRKL----------------------------VTIKKDCDISKWVKSID 254 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 D+ E K + EI KT L D S N +K E++ ++ I Sbjct: 255 DLLPKE-KNFDVLKEIYTRFGFKTF----LKDLESIDNLPTLQRKKDEEKVDIATEKTIK 309 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 + Y + ++ +++++ + T+++D ++ + I++ST K Sbjct: 310 TN-YVLVDTIDKLESCLEEIKQANLVALDTETNSLDQLKTRLVGISLSTDIGK------- 361 Query: 425 ETIFIDLSVHTSQDSTGKNTLTK-EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 +I ++ Q G N L K E+L ++ + E+E KI N KYD V GI + Sbjct: 362 -AWYIPVA---HQVELGCNQLMKAEVLEAMRSWLESEQKTKILQNAKYDMHVFANEGIVL 417 Query: 484 RGFE-DIMLMSYVLDS----GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538 +G + D M+++YV+D+ G + + + +K LSY +EI +I D + Q Sbjct: 418 KGIKHDTMVLAYVIDTNQRVGLEALSLKYLNRKGLSY--EEICGKGAKAITFDYVPLDQA 475 Query: 539 QEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++A E+++ L L PKL E L +Y+ L+ ++ V+ ME G+ ID L Sbjct: 476 TQYACEDADFTFHLLTELLPKLEGFEGLKFIYD-LEMQVLQVLFDMERVGVLIDSSKLLS 534 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S IS L LE I++L+GE+FN++SPKQL +ILFTKLK + KT+TG T L Sbjct: 535 QSEIISCRLSKLESEIFNLAGEEFNINSPKQLSEILFTKLKLETQGKTRTGVISTNEDAL 594 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E++ D+PI ++LE+R LSK+KSTY D LP INK T RVHT +S + ++GRL+S + Sbjct: 595 EKLAL-DHPIAVHLLEYRSLSKLKSTYTDKLPTMINKVTGRVHTVFSQTTVLSGRLSSFD 653 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+ + G+++R+AF++ KL+SADYSQ+ELR++AHI+ + + F+ DI Sbjct: 654 PNLQNIPIRNEDGRQVRQAFVAEDGFKLMSADYSQVELRLMAHISNDEGMLKAFKEGADI 713 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR A+E+FGV + +V RR AK INF +IYG+ F LA L I R A +YI +YF Sbjct: 714 HRSTASEVFGVPLSEVDDSQRRAAKAINFGLIYGMGAFALANNLGISRETAQNYIYKYFD 773 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 RFP + ++++ K Q+GYVETI+GRRI+ I K + + ER AINAP+QGSAA Sbjct: 774 RFPKVRKFMDDIKIQASQDGYVETIYGRRIYIPGIQDSKGARKAALERVAINAPVQGSAA 833 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AMISVHK + +KL ++++LQ+HDELV EV E EI + ME Sbjct: 834 DIIKMAMISVHKWISQNKLNSRIILQVHDELVLEVHESEIEILKLKLPKLMEDVA----K 889 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPL+ + V +NW E Sbjct: 890 LDVPLEAQVNVGSNWDE 906 >gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] Length = 901 Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust. Identities = 355/982 (36%), Positives = 529/982 (53%), Gaps = 109/982 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RAFYA P L+ + G P A+ G ML +L + + ++FAV+FD Sbjct: 8 VVLVDGSSYLFRAFYALPPLTTQK-GHPTGAMHGVIKMLMRLYDDYQP----NYFAVVFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 TFR++IYPDYKANRP +PE L Q+ PL +L T A G P I G EADD+I T Sbjct: 63 AAGKTFRHQIYPDYKANRPPMPEDLAVQIQPLHQLIT-ALGFPLIMESGVEADDVIGTLA 121 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ- 183 A E + V I S DKD+ QL++ L DT+K E I V K++ I E++ Q Sbjct: 122 RQALAEDYQVIISSGDKDMTQLLTHADITLLDTMKNETITASDVAKRFKI--EQLTAAQV 179 Query: 184 ----ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 AL GD DNIPG+ +G KTA L YG+L+ I+ NA +I+ K +N+ Sbjct: 180 IDFLALVGDKSDNIPGVEKVGAKTAEKWLATYGSLDAIIENADKIR-GKVGDNLRAGLAQ 238 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 + S++L + T+ L + I + G L AL C Sbjct: 239 LKCSQQLATINQ----TLDLPYRIADLARGAENPHKLAAL--------------C----- 275 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 ++N +N+ + +T+ + + + P+KL +Q ++ Sbjct: 276 --AQYELNDIQNRYL----------------------KTTAVAAPKAPEKLHYHLIQTIA 311 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 + +KL + F + TD+++ + + I Sbjct: 312 E----------------CNALCEKLAQKSAFVFDVETDSLNYMQAHWVGI---------- 345 Query: 420 TSFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 SF VE ++ L VH + G N E L+ LK FEN KIG ++K+D+ +L Sbjct: 346 -SFAVEAGEAWYLPL-VHQN----GINLPFAETLAALKNLFENASIRKIGQHLKFDRHIL 399 Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 RYGIS+ G +D MLMSY +S + H++ +A +L+ ++I S D+ Sbjct: 400 ARYGISLNGVIDDTMLMSYCYNSTATRHNMDDLADFYLNKQTIRFEDIAGSGAKQRRFDE 459 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQID 591 I ++A E++++ LQL+ + KL E L +YE +++P+ +++ ME G++I Sbjct: 460 IDLETAMQYACEDADITLQLYQFFQQKLASEPTLQALYENVERPLAEILWAMEHQGVKIA 519 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 D L S E++ L +L++ Y L+G FNL SPKQL +ILF +L P KT TGQ Sbjct: 520 GDKLAVQSQELAAQLKTLQKQAYQLAGGVFNLDSPKQLQEILFERLALPVIHKTPTGQAS 579 Query: 652 TTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L+++ + + + IL +R L K+KSTY D LP I+ ++RVHT Y A T T Sbjct: 580 TNEEVLQKLAELRQSALPEIILNYRALGKLKSTYTDKLPELIDPDSKRVHTSYHQAVTST 639 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S +PNLQNIPI++D G++IR+AFI+ +++ADYSQIELRI+AH+++ L + Sbjct: 640 GRLSSSDPNLQNIPIRSDEGRRIRQAFIAEEGYSILAADYSQIELRIMAHLSQDERLQRA 699 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+ DIH AAE+F V E V RR AK INF +IYG+S F LA QL I R++AA+ Sbjct: 700 FQLQQDIHTATAAELFSVAPEAVDRNQRRDAKAINFGLIYGMSAFGLARQLNISRTQAAE 759 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI +YFHR+P + Y++ + +Q GYV T+ GRR++ +I++ R ER AINA Sbjct: 760 YIDKYFHRYPQVLAYMDSARQTAQQQGYVSTLLGRRLYIPDIHNKNMQRRRAAERLAINA 819 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 P+QGSAADI + AM+ ++ K ++L+Q+HDELVFEV + I H ME Sbjct: 820 PMQGSAADIIKLAMVQFWQTYGAQK-ECRLLMQVHDELVFEVATAALDIWQPRITHIMEH 878 Query: 951 ACLPKINLRVPLKVNIKVSNNW 972 A LP L VPL V+ VS +W Sbjct: 879 A-LP---LSVPLIVDCGVSKDW 896 >gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] Length = 940 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 343/995 (34%), Positives = 529/995 (53%), Gaps = 78/995 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L +DGSSF+YRAFYA G+P A+ NML KLL K+ Sbjct: 1 MNANSCLIFIDGSSFLYRAFYAAKRGFTTKSGVPTGAVLIITNMLKKLL----KQYAGYK 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+FD +FR+++YP+YK+NRP +PE L Q+ V +A G+P I + EADD+ Sbjct: 57 IAVVFDAKGKSFRSDLYPEYKSNRPPMPEDLRIQVDYVHRIVKAMGLPLIIVPKVEADDV 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 + +Y A+ GF+ I + DKDL QLV+ L DT+ + D + V++K+G+PP ++ Sbjct: 117 LGSYAKKAQSLGFSSLICTGDKDLAQLVNDKVTLIDTMNDHVYDEKGVMEKYGVPPCHII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENIL 234 AL GDS DNIPG+PG+G TA L+ G +E+I I R + Sbjct: 177 DFLALKGDSSDNIPGMPGVGDVTAKTLINSLGGIEDIFSKREEIASLSFRGAKTFAAKLE 236 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 E+ E RLS L ++TDV + I +E L + N L++ K LEF KL A Sbjct: 237 EHIEDVRLSYTLATIKTDVDLPIAIEDLTVPKKNKEDLLNIYKELEFAKLYAEEAQ---- 292 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKT----SQFSSLSDQTSKINSEQTPQKL 350 EP+ + T +D+ + T +Q S +D ++ + Sbjct: 293 -----EPLDFEEKT-------------KDSAVPTADVKAQVQSQTDFSAGV--------- 325 Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 LS + + I + ++K++ G +F T ++ + ++ Sbjct: 326 -------LSDHKSRGSKFNLIDTIAKLDALIEKIKNKGLFAFDTETTSLHPEDCTLVGVS 378 Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 S +++K+ + ++ V ++D ++ + L F + KIGHN+K Sbjct: 379 FS-VEEKEAFYLPLAHAYLGAPVQLAKD---------DVFAKLAPVFADPKIKKIGHNVK 428 Query: 471 YDKLVLHRYGIS-MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525 +D LVL+ G+S ++G + D MLM+++LDS +S + ++A+K+LSY ++ S Sbjct: 429 FDLLVLYFAGLSAVKGVYADTMLMAHLLDSVQSCA-LDNLAEKYLSYKTIKYSDVAGSGS 487 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQME 584 S+ D + ++ E+S V L+L+ +L PK+ E K + L+ P + V+ ME Sbjct: 488 KSVTFDNVPVDIACAYSGEDSEVALRLFNVLLPKIKDEGKANDILFNLEMPCLSVLFDME 547 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 G + D L + + + L +++++IY +G++FN++SPKQLG++LF L P K Sbjct: 548 RVGALVSADELYRQTEVLKSELQAVQKDIYAAAGQEFNIASPKQLGNVLFESLAIPYPKK 607 Query: 645 TKT----GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 K + +TA+D+ I +L +R +SK+ TY + LP I+KRT R+H Sbjct: 608 VKVDKNGNKQYSTAEDVLTEIAPMYDIANLVLRFRSVSKLIGTYTEKLPLLISKRTGRIH 667 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T ++ A T TGRL+S +PNLQNIP +T G+ IR+AFI+P L+SADYSQIELR++AH Sbjct: 668 TSFNQAGTTTGRLSSSDPNLQNIPARTHEGKLIRKAFIAPQGYTLVSADYSQIELRLIAH 727 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 IAK L + F+ DIH+ AAE+ G +I +V+ + R AK NF ++YG+ L+ Q Sbjct: 728 IAKDPNLIKAFKLGYDIHKATAAEVLGKDINEVTGEERSRAKATNFGLMYGMGAHGLSAQ 787 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 + A YI YF R+P I +Y++ K F ++GYVETI GRRI + INS Sbjct: 788 TGLSFKAAKAYIDCYFTRYPKIRDYMDSIKKFAHEHGYVETILGRRIDFPGINSTNRIAV 847 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITT 939 ERAAINAP+QGSAADI + AMI++ K + T +M+LQ+HDELVFEV E + Sbjct: 848 TGAERAAINAPMQGSAADIIKIAMIAIEKWITSLPADTVRMILQVHDELVFEVKNEFLDE 907 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 A+ I ME A + L VPL I + NW + Sbjct: 908 ATAKIKELMENA----VTLDVPLLAGIGIGQNWGD 938 >gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] Length = 897 Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust. Identities = 325/979 (33%), Positives = 520/979 (53%), Gaps = 98/979 (10%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D IYRA++A P+ R DG +AI GF ML++ + KE + V Sbjct: 4 LFLIDAYGLIYRAYFALIRAPM--RTKDGRNTSAIYGFFRMLFRFV----KEYDPVYCGV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 + D TFR + + YKA R K PE L PQ+P++ +A G + + GFEADD++ T Sbjct: 58 VLDSLTPTFREKTFEAYKATRQKTPEDLHPQIPVIEEILEALGFATVRMNGFEADDVMGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI--DIEHVIKKWGIPPEKMVC 181 +A+ EG ++S DKDL QLV+ + K++ + D E V +KWG+ +++V Sbjct: 118 LAAMAQAEGRPCFVVSGDKDLAQLVTKGVKIVRMDKDDFVVLDEEGVKEKWGVRADQIVD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD+ DNIPG+ GIG KTA LL EYG+LE + + + RR + E E A Sbjct: 178 FLALVGDASDNIPGVEGIGEKTAQRLLAEYGSLEGVYAHLDELSPSLRR-KLEEGRERAF 236 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LSR L +RTD+ +++ + L + R A + L V + E Sbjct: 237 LSRDLATIRTDLDLSLTIGDLRRREPEVQRARELFLAYDIRSLAQEVGGSPSVG----EK 292 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 L++ G++ E DR +SLS Sbjct: 293 PTLEVEGPSRAGVSYEVVTDR---------ASLS-------------------------- 317 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 +WV++ G+ + TD +D + + ++ + + + Sbjct: 318 -----------------RWVEEALERGAVAVDTETDGLDPLTCRLVGVSFAVDEGR---- 356 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 ++ L+ + + +E+LS L + +K+G N+K+D VL R+G+ Sbjct: 357 ----ACYVPLAAPDVRPLPAD--VVREVLSPL---LVSTEVVKVGQNLKFDYHVLRRWGV 407 Query: 482 SMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS--SIPIDKISD 535 G F D M+ +++L+S +++ +A+K+L + K++++ S ++P+ Sbjct: 408 RPEGPFFDTMVAAWLLESDAGRYNLDRLAEKYLGWRTIHYKDVVEKGASFETVPV----- 462 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 ++ +A E++++ L+L +L+ +L E L V+ ++ P++ ++++ME GI +D + L Sbjct: 463 AEAGVYAAEDADIALRLSRVLKERLEAEGLGRVFYEMEMPLLSILARMEEWGIGLDGEAL 522 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 E+ + + ++E+ I++L G +FN+ S KQL ++LF + P KTKTG + T Sbjct: 523 SAFGRELEERISTIEKEIFELVGHEFNVGSTKQLQEVLFVERGLPPVKKTKTG-FSTDTS 581 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ D P+ +LE+R L+K+K+TY D LP +N T R+HT++S T TGRL+S Sbjct: 582 VLEELAARD-PVAAKVLEYRSLTKLKNTYVDVLPGLVNPGTGRLHTWFSQVGTATGRLSS 640 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIPIKT+ G++IR AF+ +SADYSQIEL ILAH+++ L + F Sbjct: 641 KDPNLQNIPIKTEEGRRIREAFVPQRGWWFLSADYSQIELVILAHLSEDPALCRAFREGE 700 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+HR + +FGV E V+P+ RR AKTINF +IYG+S FRL+ +L IPR EA +I Y Sbjct: 701 DVHRATGSLLFGVPPEAVTPEQRRIAKTINFGVIYGMSAFRLSRELGIPRKEAERFIDAY 760 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F + G+ +IE+T + GYV T+FGR+ I S + + ER A+N PIQGS Sbjct: 761 FTTYAGVRAFIERTIAEAEEKGYVTTLFGRKRPLPYITSRNKTQKTGAERIAVNTPIQGS 820 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 ADI + AMI + + LA++M+LQ+HDEL+FEVP EE+ +++ ME Sbjct: 821 GADIIKLAMIDLDAQMRRMGLASRMILQVHDELIFEVPPEELEVMKRLVRERMEGV---- 876 Query: 956 INLRVPLKVNIKVSNNWQE 974 + L VPL+V + V NW E Sbjct: 877 VRLSVPLRVEMGVGRNWGE 895 >gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] Length = 920 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 338/983 (34%), Positives = 542/983 (55%), Gaps = 79/983 (8%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYR++YA +P ++ K GL +AI GF N L ++L KE+ +H Sbjct: 2 DKLFLLDAYALIYRSYYAFIRSPRINSK--GLNTSAIMGFVNTLNEVLT---KEN-PTHI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR++ +P+YKA R + PE + +P+++ +AF IP ++++GFEADD+I Sbjct: 56 GVAFDL-GKTFRHDAFPEYKAQREETPEDIKLSVPIIKDILRAFNIPILQVEGFEADDVI 114 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGI-PPE 177 T A G +++ DKD QL+ +Y ++ + V K+GI P Sbjct: 115 GTLAKKAGATGVDTYMLTPDKDYGQLIGEHVFMYRPRHGGGYEVLGEKEVEAKYGITSPL 174 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ L AL GDS DN PG PG+G KTAA L+ EYG++E +L + +K K +E + Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTAAKLISEYGSIEELLAHTDSLK-GKMKEKVETAV 233 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E ++S+ L +RTDVPI + E L + +L LEF L +++ Sbjct: 234 EDIKMSKFLATIRTDVPIDLNWEELKRVAPDEHKLRELFAELEFKSLADKI--------- 284 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +N +ENK +++D +F+ + + K ++ +T + + E Sbjct: 285 --------LNKSENKKKEPNSQLDL-----FHEFTPVGPEEPKYSNYETVKTVQHE---- 327 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I N DI T S T + + ++ + ++ + ++K Sbjct: 328 ----------YKLIENQTDIINICDFFRTKSILSLDTETTSTNPIDAELVGLSFAVEEKK 377 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 ++ + + + ++I++ K +EN LK+G N+KYD VLH Sbjct: 378 --------AFYVPIPSNRQE--------AQKIVNIFKPIYENPDILKVGQNLKYDLEVLH 421 Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPIDK 532 YG++++G D ML YV+ H++ +A+ L+Y E++ R K+ + + Sbjct: 422 NYGVTLKGKMFDTMLAHYVIQP-ELRHNMDYMAETLLNYRTIHIDELIGPRGKNQKSMRE 480 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + +V E+A E++++ LQL +L KL + ++ ++ P++ V++++E+ G+ ID Sbjct: 481 LDPKEVYEYAAEDADITLQLKNVLETKLKEMECEDLFWNIEMPLMPVLAEIEMNGVVIDT 540 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651 D L++ SA ++K + E IY L+GE+FN+SSPKQ+GDILF K+K KTKTGQ+ Sbjct: 541 DSLRETSAILTKRMQDYEHEIYQLAGEEFNISSPKQVGDILFGKMKIVEKPKKTKTGQFV 600 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+ + L+Q+ +PI+ ILE+R L K+ TY D+LP IN RT +HT ++ A T TG Sbjct: 601 TSEEVLQQLE-NKSPIVAKILEYRGLKKLLGTYVDALPKLINPRTGHIHTSFNQAITATG 659 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP++ + G++IR+ FI P SADYSQIELR++AH++ + + F Sbjct: 660 RLSSSDPNLQNIPVRGEDGKEIRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKNMIEAF 719 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DIH AA+I+ IE+V+ R AK NF IIYGI+ + LA +L I EA + Sbjct: 720 MHGYDIHAATAAKIYKKPIEEVTRDERNKAKRANFGIIYGITTYGLAQRLDIDNREAKEL 779 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I+ YF FP ++EY+E+ K R GY ET+F RR + +INS +++R ER AINAP Sbjct: 780 IEGYFETFPQVYEYMERAKADARAKGYAETLFHRRRYLPDINSHNATVRGYAERNAINAP 839 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGSAADI + AMI + + + +K++LQ+HDEL F V +E +I++ M+ A Sbjct: 840 IQGSAADIIKVAMIRISDRFKRENIHSKLILQVHDELNFSVYPDEKEKVERIVLEEMQNA 899 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 LRVPL + +NW E Sbjct: 900 ----YPLRVPLVADAGWGSNWLE 918 >gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] Length = 903 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 327/983 (33%), Positives = 517/983 (52%), Gaps = 102/983 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L DG++ ++RA++ P L+ + G V A GF ++L K+L + + + +A+ FD Sbjct: 6 IVLFDGTNLVHRAYHVLPPLTVRKTGEVVGAAFGFASILIKVLTDLKPDC----YAISFD 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ DYKA RP +P+ L+ QL VR AF +P E GFEADD++ T Sbjct: 62 KKGPTFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLAT 121 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--------------TTCLYDTVKEEKIDIEHVIKKW 172 A EG V I S D D MQLVSP T LYD V K+ Sbjct: 122 RAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEAA--------VRAKY 173 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 G+ PE + +AL GD DNIPG+PGIG KTA L++EYG +E+I N +I ++ Sbjct: 174 GLGPEHVADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKK 233 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 + + AE AR S+ L + D+P+ ++ E N +++ + LEF +LINR+ Sbjct: 234 LADNAEVARQSKILTTIVCDLPLDFSIQECRSEHYNRQKVVDLFRELEFFRLINRLPGG- 292 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 EN G + T F+ TPQK+ Sbjct: 293 -----------------ENPGGGM-----------TDMFN-------------TPQKV-- 309 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 ++ + N +++ V++ + + + +A ++ A+AIS Sbjct: 310 -------------ETRYIVANGQNLDSIVKRFTETKELALAVSGTSEEAIDARLTALAIS 356 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 + E FI S ++ E L N++ K HN KY Sbjct: 357 PAEG--------EAYFI--SAEFIGSASDGQMFVSEGHPGLIALLTNKNITKTAHNAKYL 406 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531 +L G ++G + D ML +++L G + I + + ++ + Sbjct: 407 MNLLASAGQEIQGLDFDTMLSAHLL--GEKNLGIKDLVFEHFGVEIADVENILTQNGKKK 464 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 S S++ E A ++ +L L +L KL+ ++ ++ P++ ++ ME +GI +D Sbjct: 465 SFSASELSEAAQLVADYTFRLKGLFAAQLAETKLIDLFVNVEMPLVPILLGMERSGIMLD 524 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 DLLK ++ ++ + LEE IY +G FN+ SP+QLG ILF +LK P KTKTG + Sbjct: 525 TDLLKGMAEKVGGQIFKLEEAIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTG-YS 583 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A+ L+++ G++ I+ ILE+R L K+KSTY D+LP +N T+R+HT ++ T TG Sbjct: 584 TGAEVLDELK-GEHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATG 642 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S EPNLQNIP++ ++G++IRRAFI+P +++ DYSQI+LR+LAH++ L + F Sbjct: 643 RLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAF 702 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIH AA + + +V+ + RR AKT+NF +IYG+S + L + +EA + Sbjct: 703 LKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKF 762 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 IK YF ++P + Y + K+ R NGYVET+ GRR + EINSP +R ER AIN P Sbjct: 763 IKAYFEKYPRVAIYFAEIKHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMP 822 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG++ADI + AM+ + + L++ KL +++LLQ+HDEL+FEVP+ E+ S +++ +M A Sbjct: 823 VQGTSADIIKLAMVRLDEKLKEEKLESRLLLQVHDELIFEVPDAELKRMSALLMETMSGA 882 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + +PLKV +K NW + Sbjct: 883 ----VTFEIPLKVELKSGANWGD 901 >gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630] gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42] gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile] Length = 882 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 336/980 (34%), Positives = 531/980 (54%), Gaps = 110/980 (11%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E L ++DG+S I RAFYA P ++ K +GL NAI GF ML+K++ + +H +V Sbjct: 2 EKKLIIIDGNSIINRAFYALPEMNNK-EGLKTNAIYGFTTMLFKMIDIYK----PTHISV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A TFR+ Y +YKA R +P+ L QL ++ F I +EI G+EADDII T Sbjct: 57 AFDRKAPTFRHLEYKEYKAGRKGMPDELAEQLQPLKDLLDKFRINRLEIDGYEADDIIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 + AE+ G+ V I++ DKD +QL S T T K E+ + VI+K+ + P + Sbjct: 117 VSKKAEENGYKVYIVTGDKDAIQLASDNTTTLITKKGVGEVEEYNFNSVIEKYEMTPTQF 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+ L GD DNIPG+PGIG KT L++E+ ++EN++ N ++K +++ I E E Sbjct: 177 IDLKGLMGDKSDNIPGVPGIGEKTGIKLIKEFSSIENLIENTDKLKGSVKKK-IEENKEI 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A S++L + DVPI + L+ +I D + L+ + F Sbjct: 236 AIQSKRLATIIRDVPIEVDLDSMIFGDYDKDELLDKFRYFGF------------------ 277 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 TS S L D ++E +K+ Sbjct: 278 ----------------------------TSLLSRLVDLVDSDDTEHVEEKI--------- 300 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 +I+ KDI++++ ++ G K + + I I IS +K Sbjct: 301 ----------EILKLKDIEKFIDEVNKKGQVILKTVRGQGNILEKNIIYIFISVDGEK-- 348 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 ++D N ++K L F N K G+N+K D + L Y Sbjct: 349 ------IYYVD-----------SNEVSK-----LDSIFSNNEIKKYGYNLKDDYISLKPY 386 Query: 480 GISMRG-FEDIMLMSYVLDSGRS-SHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534 I++ + DI + Y++DS S S+D ++IA K+LS +++E+L S + + Sbjct: 387 NINLENMYFDITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKEELLGKGVKSKNYEDLE 446 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + E+ + + + ++ L+ + ++ ++ P+++V+ ME GI++D+ + Sbjct: 447 FEDLAEYMGQIICTVKETVPMMERSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSI 506 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L ++S E + + +LE+ IY+LSGE FN++SPKQLG ILF KL+ P KTKTG + T A Sbjct: 507 LDELSVEFKEIIATLEKEIYELSGEPFNINSPKQLGVILFEKLELPIIKKTKTG-YSTNA 565 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE++ +PII I E+RQ+ K+ STY + L N IN + R+H+ ++ T TGR++ Sbjct: 566 DVLEKLR-DKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFNQTITTTGRIS 624 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S EPNLQNIPIK ++G+KIR+ FI+ KL+ ADYSQ+ELR+LAH+++ + + F++ Sbjct: 625 STEPNLQNIPIKMEMGRKIRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHH 684 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH A+++F V +E V+ ++R AK +NF IIYG S F LA L IP +A +YI+ Sbjct: 685 EDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGIIYGKSDFGLADDLNIPVPKAKEYIES 744 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF ++ I E+++ T ++GY TI RR + EI S RN +R A+NAPIQG Sbjct: 745 YFAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYIPEIKSSNFMERNRGKRFAMNAPIQG 804 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 SAADI + AMI+VHK LE++ L +K++LQ+HDEL+ E ++EI +I+ ME A Sbjct: 805 SAADIIKIAMINVHKKLEENNLKSKLILQVHDELIVEAIDDEIDIVKKIVKEEMENA--- 861 Query: 955 KINLRVPLKVNIKVSNNWQE 974 +N+ V L V++ V ++W E Sbjct: 862 -VNMDVHLDVDLNVGSSWYE 880 >gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM 17393] gi|189437164|gb|EDV06149.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM 17393] Length = 941 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 349/997 (35%), Positives = 545/997 (54%), Gaps = 85/997 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M ++ LFL+D + IYRA+YA +P ++ K G +AI GF N L ++L K+ Sbjct: 1 MNSDDKLFLLDAYALIYRAYYAFIKSPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 SH V FD TFR+E Y YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PSHIGVAFDPAGPTFRHEAYEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + IE V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSENVFMYRPKHTGGFEIMGIEQVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 ++++ + L GD+ DNIPG PG+G KTA L+ E+G++E N+ Sbjct: 175 QSTQQVIDMLGLMGDASDNIPGCPGVGEKTAQKLISEFGSIE----------------NL 218 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 LE+ + + + L+T V N +I+F K L K+ V D Sbjct: 219 LEHTDQLKGA-----LKTKVE-------------NNREMITFSKFLATIKI--DVPIKLD 258 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDR--DTTIKTSQFSSLSDQTSKINSEQTPQKLF 351 A V + N E + I E E D +K S S S + S P LF Sbjct: 259 MKAL----VREEPNEEELRKIFEEMEFRTLIDRVLKKSNAPSPSSAAPDLFS---PGPLF 311 Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI-ITDTMDAFHS---KPI 407 + P+ + + + + + L + +++F + DT + K + Sbjct: 312 AP-----NNGPVQGNLFEEFAGDRLDDEKKSNLARLETSNFDYQLLDTEEKRSEIIKKLL 366 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE------ILSYLKKFFENEH 461 I ++D + ++ +E + +S +++ + E I++ + +ENE+ Sbjct: 367 TTKILSIDTETTSAEPMEAELVGMSFSDTENQAYYVPVPPEREEALKIVNEFRPLYENEN 426 Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517 +K+G NIKYD LVL YG+ ++G D ML YVL H++ +A+ +L Y Sbjct: 427 SMKVGQNIKYDILVLQNYGVEVKGELFDTMLAHYVLQP-ELRHNMDYLAEIYLHYQTIHI 485 Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 E++ + K+ + + +V ++A E++++ L+L +L +L + + H++ ++ P+ Sbjct: 486 DELIGPKGKNQKNMRDLPPEEVYKYACEDADITLKLKNVLEEELKKQGVEHLFYEIEMPL 545 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 + V++ ME G++ID + LKQ S + L +E+ IY+L+GE FN++SPKQ+G+ILF K Sbjct: 546 VRVLANMESNGVRIDTETLKQTSEHFTVRLQEIEKEIYELAGETFNIASPKQVGEILFDK 605 Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 LK AK TKTGQ+ T+ + LE + + +I ILE+R L K+ TY D+LP IN R Sbjct: 606 LKIIDKAKKTKTGQYVTSEEVLESLR-NKHEVIGKILEYRGLKKLLGTYVDALPLLINPR 664 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T R+HT ++ A T TGRL+S PNLQNIPI+ + G++IR+AFI + SADYSQIEL Sbjct: 665 TGRIHTSFNQAVTATGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDDDCEFFSADYSQIEL 724 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH+++ + F + DIH AA+I+ ++I+ V+P MRR AKT NF IIYGIS F Sbjct: 725 RIMAHLSEDKNMIDAFLSGYDIHAATAAKIYKIDIKDVTPDMRRKAKTANFGIIYGISIF 784 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA ++ + R EA + I YF +P + EY++K+ R+ GYVETIF R+ +INS Sbjct: 785 GLAERMNVDRKEAKELIDGYFETYPQVREYMDKSIQVAREQGYVETIFHRKRFLPDINSR 844 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 +++R ER AINAPIQGSAADI + AM +++ + +KL KM+LQ+HDEL F VPE Sbjct: 845 NATVRGYAERNAINAPIQGSAADIIKVAMARIYERFQSYKLKAKMILQVHDELNFSVPEA 904 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E QI++ ME+A + VPL+ + NW Sbjct: 905 EKEFVQQIVIEEMERAY----RMHVPLRADCGWGKNW 937 >gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565] gi|260620957|gb|EEX43828.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565] Length = 930 Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust. Identities = 347/987 (35%), Positives = 539/987 (54%), Gaps = 72/987 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M +N LFL+D + IYRA+YA P ++ K G +AI GF N L ++L K+ Sbjct: 1 MDSDNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVPGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + +E V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + L GDS DNIPG PGIG KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 KSPAQVIDMLGLMGDSSDNIPGCPGIGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E S+ L ++ DVPI + ++ L+ E + L S + LEF LI+RV Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDALVREQPDEEALRSIFEELEFRTLIDRVLKKET 293 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 + P ++ I+ F++ + N +K LE Sbjct: 294 SAPLPLFP-------------------EKSEGIQGDLFANFTG-----NEPSEAKKSNLE 329 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 L+ L Y I + ++ +QKL T S T + ++ + ++ S Sbjct: 330 TLESLCC------DYQLIDTEEKRKEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSI 383 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 + E ++ V +Q+ T K I++ + FENE LK+G NIKYD Sbjct: 384 AEN--------EAFYV--PVPANQEETLK------IVNEFRPVFENESSLKVGQNIKYDM 427 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528 +VL YG+ ++G D M+ YVL H + +A+ +L Y E++ + K+ Sbjct: 428 IVLQNYGVEVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 486 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + ++ V +A E+++V L+L +L +L ++ ++ P++ V+ +E G+ Sbjct: 487 NMRDLAPKDVYRYACEDADVTLKLKNVLEKELKENGTERLFYDIEMPLVPVLVNIERNGV 546 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647 +D + LKQ SA ++ + +E+ IYDL+GE FN++SPKQ+G++LF KLK AK TKT Sbjct: 547 LLDTEALKQSSAHFTEQMERIEKEIYDLAGETFNIASPKQVGEVLFDKLKIVEKAKKTKT 606 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQ+ T+ + LE + +P+++ ILE R L K+ TY D+LP IN RT RVHT ++ Sbjct: 607 GQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV 665 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIELRI+AH+++ + Sbjct: 666 TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 725 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F ++ DIH AA+I+ + +++V MRR AKT NF IIYGIS F LA ++ + R E Sbjct: 726 IDAFLSNHDIHAATAAKIYKIGLKEVDSDMRRKAKTANFGIIYGISVFGLAERMNVERKE 785 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A + I YF +PG+ Y++++ ++ GYVETIF R+ +INS + +R ER A Sbjct: 786 AKELIDGYFETYPGVKAYMDQSIRVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNA 845 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQGSAADI + AM +++ + TKM+LQ+HDEL F VP +E +I++ Sbjct: 846 INAPIQGSAADIIKVAMARIYQRFRAEGIKTKMILQVHDELNFSVPIDEKERVEEIVIEE 905 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 MEKA + VPLK + NW E Sbjct: 906 MEKA----YRMHVPLKADCGWGKNWLE 928 >gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT] gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT] Length = 903 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 328/983 (33%), Positives = 517/983 (52%), Gaps = 102/983 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L DG++ ++RA++ P L+ + G V A GF ++L K+L + + + +A+ FD Sbjct: 6 IVLFDGTNLVHRAYHVLPPLTVRKTGEVVGAAFGFASILIKVLTDLKPDC----YAISFD 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ DYKA RP +P+ L+ QL VR AF +P E GFEADD++ T Sbjct: 62 KKGPTFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLAT 121 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--------------TTCLYDTVKEEKIDIEHVIKKW 172 A EG V I S D D MQLVSP T LYD V K+ Sbjct: 122 RAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEAA--------VRAKY 173 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 G+ PE + +AL GD DNIPG+PGIG KTA L++EYG +E+I N +I ++ Sbjct: 174 GLGPEHVADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKK 233 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 + + AE AR S+ L + D+P+ ++ E N +++ + LEF +LI+R+ Sbjct: 234 LADNAEVARQSKILTTIVCDLPLDFSIQECRSEHYNRQKVVDLFRELEFFRLIHRLPGG- 292 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 EN G + T F+ TPQK+ Sbjct: 293 -----------------ENPGGGM-----------TDMFN-------------TPQKV-- 309 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 ++ I N +++ V++L + + + +A ++ A+AIS Sbjct: 310 -------------ETRYIIANGQNLDSIVKRLTETKELALAVSGTSEEAIDARLTALAIS 356 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 + E FI S ++G E L N++ K HN KY Sbjct: 357 PAEG--------EAYFI--SAEFIGSASGGQMFVSEGHPGLIALLTNKNITKTAHNAKYL 406 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531 +L G ++G + D ML +++L G + I + + ++ + Sbjct: 407 MNLLASAGQEIQGLDFDTMLSAHLL--GEKNLGIKDLVFEHFGVEIADVENILTQNGKKK 464 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 S S++ E A ++ +L L +L L+ ++ ++ P++ ++ ME +GI +D Sbjct: 465 SFSASELSEAAQLVADYTFRLKGLFAAQLAEINLIDLFVNVEMPLVPILLGMERSGIMLD 524 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 DLLK ++ ++ + LEE IY +G FN+ SP+QLG ILF +LK P KTKTG + Sbjct: 525 TDLLKGMAEKVGGQIFKLEEAIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTG-YS 583 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A+ L+++ G++ I+ ILE+R L K+KSTY D+LP +N T+R+HT ++ T TG Sbjct: 584 TGAEVLDELK-GEHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATG 642 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S EPNLQNIP++ ++G++IRRAFI+P +++ DYSQI+LR+LAH++ L + F Sbjct: 643 RLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAF 702 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIH AA + + +V+ + RR AKT+NF +IYG+S + L + +EA + Sbjct: 703 LKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKF 762 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 IK YF ++P + Y + K+ R NGYVET+ GRR + EINSP +R ER AIN P Sbjct: 763 IKAYFEKYPRVAIYFAEIKHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMP 822 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG++ADI + AM+ + + L++ KL +++LLQ+HDEL+FEVP+ E S +++ +M A Sbjct: 823 VQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAEFKRMSALLMETMSGA 882 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + +PLKV +K NW + Sbjct: 883 ----VTFEIPLKVELKSGANWGD 901 >gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] Length = 921 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 340/981 (34%), Positives = 530/981 (54%), Gaps = 78/981 (7%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA P ++ K G +AI GF N L +++Q + SH V Sbjct: 4 LFLLDAYALIYRSYYAFIKNPRINSK--GFNTSAILGFVNTLHEVIQKEQ----PSHLGV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E + DYKA R K PE + +P+++ +A IP +E++G+EADD+I T Sbjct: 58 AFDPSGPTFRDEAFADYKAQREKTPEDIKLSVPIIKQILEAMNIPILEVKGYEADDVIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPEKM 179 A +++ DKD QLV +Y E + +E + +K+ I P ++ Sbjct: 118 LATQASAFDMETYMLTPDKDYGQLVKENVFIYRPRHGGGYEILGVEQIKEKYQIESPSQV 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + + AL GDS DN PG PG+G KTA L+ ++ ++ N+L N +++K K +E + + Sbjct: 178 IDILALMGDSADNFPGCPGVGEKTAIKLINDFKSINNLLENTNQLK-GKLKEKVEGAVDD 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 ++S L ++TDVPI + L L L N +L + LEF L N+ Sbjct: 237 IKMSNFLATIKTDVPIELNLTDLQLTPPNEEKLRALFDELEFRTLANKF----------- 285 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 TEN I+T+ SQ + + TS N PQ E + L Sbjct: 286 ------FKKTEN----IQTK-------DNSQLNLFEEFTS--NDAVEPQ---FENYKTLF 323 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 N Y I +DI L T S T +++A ++ + ++ S Q Sbjct: 324 DTKYN---YKLIEKEEDINNLCDLLLTKRIVSLDTETTSLNALEAELVGLSFSVSPQ--- 377 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 E ++ + + ++I++ + +ENE K+G NIKYD VL Y Sbjct: 378 -----EAFYVPIPNEQQK--------AQKIVNAFQPLYENEEIEKVGQNIKYDIEVLRNY 424 Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR----KEILKSRKSSIPIDKIS 534 GI+M+G D M+ Y+L H++ +A+ +L Y + I K + + ++ Sbjct: 425 GITMKGPLFDTMIAHYLLQP-ELRHNMDDMAETYLRYKTIHIDQLIGAKGKDQLNMRSLA 483 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 Q+ ++A E++++ LQL + PKL L +++ ++ P+I V+++ME G+++D Sbjct: 484 PEQIVDYACEDADITLQLKNIFEPKLKEAGLYPLFKEVEMPLIYVLAEMECNGVKLDVQA 543 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTT 653 L +VS ++ L E+ IY+L+GE FN+SSPKQ+G ILF KLK KTKTGQ+ T+ Sbjct: 544 LSEVSKTFNEQLSLYEQKIYELAGETFNISSPKQVGTILFEKLKVAEKPKKTKTGQYVTS 603 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 ++L+++ +PII IL++R L K+ STY D+LP +N +T +HT ++ A+T TGRL Sbjct: 604 EEELQKL-INKHPIIDEILKYRGLKKLLSTYVDALPKLVNPKTGNIHTSFNQATTATGRL 662 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIP++ + G++IR+ FI SADYSQIELRI+AH++ + + F Sbjct: 663 SSSDPNLQNIPVRGEDGKEIRKCFIPNEGCLFFSADYSQIELRIMAHLSGDENMIEAFIE 722 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIH AA+I+ I++V+ R AK NF IIYGI+ F LA +L I R+EA I+ Sbjct: 723 GHDIHAATAAKIYKKPIDEVTRDERTKAKRANFGIIYGITVFGLAERLNIERNEAKQLIE 782 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF FP + Y+E+ K +QNGYVET RR + +INS +++R ER AINAPIQ Sbjct: 783 GYFSTFPQVQAYMEQCKETAKQNGYVETFMHRRRYLADINSQNATVRGYAERNAINAPIQ 842 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 GSAADI + AM+ +++ + + +KM+LQ+HDEL F V E +I++ M+ A Sbjct: 843 GSAADIIKLAMVRIYERFNNEGIKSKMILQVHDELNFSVLPNEKEQVEKIVLEEMQNA-- 900 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 L+VPL + NW E Sbjct: 901 --FALKVPLIADAGWGANWLE 919 >gi|332283708|ref|YP_004415619.1| DNA polymerase I [Pusillimonas sp. T7-7] gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7] Length = 860 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 329/931 (35%), Positives = 498/931 (53%), Gaps = 92/931 (9%) Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 A + A +FD TFR++IYP YK NRP +PE L Q + A A G P + + G EA Sbjct: 6 ADYAACVFDARGKTFRDDIYPLYKGNRPSMPEELAAQTEPIHRAVAALGWPVLAVPGVEA 65 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DDII T A +EG + + DKDL QLV+ L +T+ E+ DI+ VIKK+G+ P+ Sbjct: 66 DDIIGTLARRAAQEGVHTVVSTGDKDLAQLVNEHVELVNTMSGERQDIDGVIKKFGVTPD 125 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 ++V LTGD++DNIPG+ +G KTAA L +Y ++ ++ NA +K N+ Sbjct: 126 QIVDFLMLTGDTVDNIPGVEKVGPKTAAKWLAQYKTIDALVENADSVKGVAGN-NLRAAI 184 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 ++R+LV ++TD C+ P L S L AL Sbjct: 185 PNFDMTRQLVTIKTD--------------CDIPELASGLSAL------------------ 212 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIK-------TSQFSSLSDQTSKINSEQTPQKL 350 T +DRD + S L+ ++ + + Q Sbjct: 213 ------------------TPTPVDRDVLVNLYNEYGFRSWLRELTGDADRVPEQDSRQP- 253 Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 Q++ Q P D Y I + D +W++ + + + T ++D ++ + ++ Sbjct: 254 -----QEIPQAPEQLD-YQTINDWADFDRWLKIIASADLVALDTETTSLDPMQARLVGLS 307 Query: 411 ISTLDQKDDTSFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 +S VE +I ++ H D +E+L L+ + E+ K+ H Sbjct: 308 MS-----------VEAGVACYIPVA-HRGPDHA-PQLPKQEVLDRLRPWLEDSKAHKLLH 354 Query: 468 NIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS 523 N KYD VL G+++ G ED ML +YVL+S + ++ +A++WL T +++ Sbjct: 355 NAKYDTHVLMNEGVALAGVAEDTMLQAYVLESHKRV-NMQELAERWLGRIGTTYEDLCGK 413 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 I D+I + +A E+++ LQL +LRPK++ + L +L+ ++ + Sbjct: 414 GAKQIGFDEIDVDKASHYACEDADFTLQLHQVLRPKVLADPGLENIYQLEVQASATLAII 473 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E G+ ID LL S E+ + LL E Y+L+G+ FNL+SPKQLG+ILF +++ P Sbjct: 474 ERNGVAIDGKLLAAQSHELGQKLLEFEAKAYELAGQPFNLNSPKQLGEILFQRMQLPIVR 533 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KT +G +T +D+ D P+ +LE+R L+K+KSTY D LP IN RT RVHT Y Sbjct: 534 KTPSGA-PSTDEDVLTKLAHDYPLPALLLEYRGLAKLKSTYTDKLPKMINPRTGRVHTRY 592 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 + A+ +TGRLAS +PNLQNIP++T G+++R AF++ +++SADYSQIELR++AH++ Sbjct: 593 AQAAVITGRLASSDPNLQNIPVRTPEGRRVRAAFVAS-GGQIVSADYSQIELRVMAHVSD 651 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L Q FE DIH+ AAE+FG +VS + RR AK INF +IYG+ F LA+ L I Sbjct: 652 DENLRQAFERGDDIHQATAAEVFGAAQAEVSAEQRRAAKAINFGLIYGMGEFGLASNLGI 711 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 R A YI RYF R+PG+ Y+E+TK + GYVET+FGRR+ ++ K R Sbjct: 712 TRDAARAYIDRYFARYPGVAAYMEQTKRMANELGYVETVFGRRLWLPDLRGAKGPRRAAA 771 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ERAAINAP+QG+AAD+ + AM++V LE L T M++Q+HDELVFEVP +E+ I Sbjct: 772 ERAAINAPMQGTAADLIKMAMVAVQDWLEAEGLKTLMVMQVHDELVFEVPADEV----DI 827 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I + L VPL + V NW++ Sbjct: 828 IKKHLPALMCNVAQLSVPLVAEVGVGPNWEQ 858 >gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] Length = 918 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 334/977 (34%), Positives = 548/977 (56%), Gaps = 74/977 (7%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L+L+DG++ +YRA +A PL++ K G+ +AI G N +L+N++ A++ A+ Sbjct: 5 LYLIDGTALLYRAHFAFIKNPLINSK--GIHTSAIFGVINSFLHILENTQ----AAYVAI 58 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A TFR+ +Y YKA RP +P+ L Q+ V+ + G+ I + G+EADDI+ T Sbjct: 59 SFDRKAPTFRHNLYEAYKAQRPPMPDELTAQIEPVKRFFELIGLKEIGLDGYEADDILGT 118 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + K+ F + +++DKD QLV + + D +K+ +D + V K+G+ PE+ + Sbjct: 119 LAKLY-KDQFQIVFLTSDKDYCQLVDERSVMLDPMKDIVLDRDAVYAKYGVYPEQFIDYL 177 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD DNIPG+ IG KTAA+LL EY L+NI N ++K + +E + E E A LS Sbjct: 178 ALVGDPSDNIPGVSSIGPKTAAMLLSEYQTLDNIYANLDKLK-PRLQEVLRENKENAYLS 236 Query: 244 RKLVMLRTDVPITIP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 ++L + TDVPI P LEHL + + I L+ E + ++ Y Sbjct: 237 KQLAKIDTDVPIPKPDLEHLTFWAKDLRKAIPLLEEYEINSIKRKIELKYP--------- 287 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + NTT+ +TE D ++ PQ+ E +K+ Sbjct: 288 --ETNTTKQ-----QTEYQDDI----------------FKEKEKPQEETAETEEKMPFSA 324 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + +VNT + +++L+ S TD+ + + + I+ +D+K Sbjct: 325 V-------LVNTLNFVTLLKELKEAKQISLDTETDSPEPMRANLVGISF-CMDEK----- 371 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 + ++ L N E+L +L+ + + L +GHN+K+D +VL R G+ Sbjct: 372 --KAYYLPLG-----HQLAVNLPLPEVLRHLEDALKGK--LLLGHNLKFDLIVLARNGLE 422 Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538 + D ML +Y+LD G ++ + + A L+Y +++ K+ D + + Sbjct: 423 LDNPLFDTMLAAYILDPGTLNYSLETCALNELNYKMIPISDLIGKGKNQSTFDLVEPEKA 482 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++ E++ + +L+ + R K+ + ++++ ++ P+I V+ QME+ G+ ID +L ++ Sbjct: 483 CIYSAEDAWAVYKLYPVYRRKVDFSVMANLFDTIELPLIKVLQQMEMNGVAIDCSVLSEI 542 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S +I+ L +L + IY +G +FN++S +QL +LF + K P G KTKTG + T LE Sbjct: 543 SHQINLELKTLTDKIYAFAGYEFNINSTQQLAKLLFEEKKLPYGRKTKTG-YSTDNSVLE 601 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ D I I+++RQLSK++STY +LP IN +T R+H+ ++ T TGRL+S P Sbjct: 602 ELAI-DYEIAGIIIQYRQLSKLQSTYVSALPKMINPQTGRIHSSFNQTVTSTGRLSSSNP 660 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDI 777 NLQNIP++T++G++IR+AF + + LI ADYSQIELR+LA +++ L + F+ LDI Sbjct: 661 NLQNIPVRTEIGREIRKAFCAKDAEHLILDADYSQIELRLLALMSEDEVLIEAFKQDLDI 720 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H+ +AA+IF V+IEKV+P RR AKTINF I+YG+ +L+ +L I +EA D I Y+ Sbjct: 721 HKRMAAKIFNVDIEKVTPDQRRAAKTINFGILYGMGQRKLSRELGISLNEAKDIIDGYYA 780 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 +FP I +I + N RQ Y ET+FGRR++ I+S +++ ER A+N PIQG+AA Sbjct: 781 QFPSIRNFINQCVNKARQQHYAETLFGRRLYLPNIDSKNQGLKSEAERIAVNMPIQGTAA 840 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 D+ + AM+++HK + D + KM+LQ+HDEL+FEV +E + I+ ME A PK Sbjct: 841 DLIKIAMLNIHKQI-DKREDIKMILQVHDELLFEVQQEALEETKNIVKTCMESALPPKYA 899 Query: 958 LRVPLKVNIKVSNNWQE 974 +V LK ++ V NW E Sbjct: 900 EKVHLKTDVGVGKNWFE 916 >gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] Length = 931 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 338/985 (34%), Positives = 535/985 (54%), Gaps = 85/985 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYRA+YA P ++ K G +AI GF N L ++L RKE+ +H + Sbjct: 13 LFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---RKEN-PTHIGI 66 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E Y YKA R + PE + +P+++ +A+ IP +EI G+EADD+I T Sbjct: 67 AFDPSGPTFRHEAYEAYKAQREETPEAIRQSVPVIKDIIRAYHIPILEIAGYEADDVIGT 126 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGI-PPEK 178 A K G +++ DKD QLV +Y +K + +E V K+ I P + Sbjct: 127 LATEAGKRGINTYMMTPDKDYGQLVGEHVFMYRPKYGDKDFEVMGVEEVKAKFDIQSPLQ 186 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILE 235 ++ + L GD+ DNIPG PG+G KTA L+ ++G++EN+L + +K +KK EN Sbjct: 187 VIDMLGLMGDTADNIPGCPGVGEKTAQKLIAQFGSIENLLAHTDELKGAIKKKVEEN--- 243 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E S+ L ++TDVPIT+ +E L E+ + L + LEF LI+RV Sbjct: 244 -KEQITFSKFLATIKTDVPITLDMEALKREEPDEEELRRLFEMLEFRSLIDRV------- 295 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 I E + + F +++ + + L RL Sbjct: 296 ------------------IKTEKKAPSSPAAQPDLFGFFAEEDT-----ADAKNSILTRL 332 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + LS Y + N + + +KL S T +D ++ + ++ S + Sbjct: 333 EDLSY------DYQLVDNKEKMAVLAEKLLAQKFFSLDTETTGIDPITAELVGMSFSFAE 386 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + ++ + + + T I++ K FEN LKIG NIKYD ++ Sbjct: 387 N--------QAFYVPVPANREEALT--------IVNIFKPAFENPDSLKIGQNIKYDLIM 430 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIPI 530 L YG++++G D M+ YVL H + +A+ +L Y +E++ ++ K + Sbjct: 431 LANYGVTLKGKMFDTMIAHYVLQP-ELRHGMDYLAEIYLKYETIKIEELIGAKGKKQGNM 489 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 ++ V ++A E+++V L+L +L +L + ++E ++ P++ V++ ME G++I Sbjct: 490 RDLAPEAVYKYACEDADVTLKLKQVLENELETNGVKKLFEEIEMPLVPVLAYMERNGVRI 549 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQ 649 D + LK+ S + + +EE ++ L+G +FN++SPKQ+G++LF +LK AK TKTGQ Sbjct: 550 DTEALKETSRHFTARMNQIEEEVHQLAGMEFNIASPKQVGEVLFDRLKIVEKAKKTKTGQ 609 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T+ + LE + G + I+ ILE R L K+ TY D+LP IN T R+HT ++ T Sbjct: 610 YVTSEEVLESLR-GKHEIVGKILEHRGLKKLLGTYIDALPQLINPATGRIHTSFNQTVTA 668 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S PNLQNIPI+ + G++IR+AFI + SADYSQIELRI+AH++ + + Sbjct: 669 TGRLSSSNPNLQNIPIRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSNDPHMIE 728 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F+ DIH AA+I+ V +E+V+ + R AKT NF IIYGIS F LA +L + R EA Sbjct: 729 AFQKDQDIHAATAAKIYKVKLEEVTREQRSKAKTANFGIIYGISVFGLAERLNVDRKEAK 788 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 I YF +P + Y++++ R+ GY+ETIF R+ + +INS + +R ER AIN Sbjct: 789 ALIDGYFENYPNVKAYMDQSIQEAREKGYIETIFKRKRYLPDINSKNAVVRGYAERNAIN 848 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 APIQGSAADI + AMI +++ ++ + +KM+LQ+HDEL F V EE QI++ ME Sbjct: 849 APIQGSAADIIKVAMIRIYQRFQEEGIRSKMILQVHDELNFSVLPEEKEKVQQIVISEME 908 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A ++ PL+ + +NW E Sbjct: 909 AAY----KMKAPLRADHGWGHNWLE 929 >gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f] gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f] Length = 949 Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust. Identities = 351/999 (35%), Positives = 542/999 (54%), Gaps = 77/999 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M N LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MDSGNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + +E V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 QSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVSEFGSIENLLEHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288 E S+ L ++ DVPI + ++ L+ E+ + L S + LEF LI+RV Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDALVREEADENSLRSIFEELEFRTLIDRVLKKDI 293 Query: 289 -------ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341 AT P L + E G+ + F++ + Sbjct: 294 SGNGITSATGSKVATGKSAPSPLPLFPEEGGGM------------QGDLFANFTP----- 336 Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401 + +K LE L+ L+ SY I + Q+ +QKL T S T + Sbjct: 337 DEPGEAKKSNLETLESLTY------SYQLIDTEEKRQEIIQKLLTSKILSLDTETTGTEP 390 Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461 ++ + ++ S + E ++ V + QD K I++ + FENE+ Sbjct: 391 MDAELVGMSFSIAEN--------EAFYV--PVPSDQDEALK------IVNEFRPVFENEN 434 Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517 LK+G NIKYD +VL YG +++G D M+ YVL H + +A+ +L Y Sbjct: 435 SLKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHI 493 Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 E++ + K+ + + V +A E+++V L+L +L +L ++ ++ P+ Sbjct: 494 DELIGPKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPL 553 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 + V+ +E G+ +D + LKQ SA + + +E+ IY+L+GE FN++SPKQ+G++LF K Sbjct: 554 VPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDK 613 Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 LK AK TKTGQ+ T+ + LE + +P+++ ILE R L K+ TY D+LP IN R Sbjct: 614 LKIVEKAKKTKTGQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPR 672 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T RVHT ++ T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIEL Sbjct: 673 TGRVHTSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIEL 732 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH+++ + F ++ DIH AA+I+ +++ V MRR AKT NF IIYGIS F Sbjct: 733 RIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKTDLKDVGSDMRRKAKTANFGIIYGISVF 792 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA ++ + R EA + I YF +PG+ Y++K+ ++ GYVETIF R+ +INS Sbjct: 793 GLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSR 852 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + +R ER AINAPIQGSAADI + AM +++ + + KM+LQ+HDEL F VP Sbjct: 853 NAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVN 912 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E +I++ MEKA + VPLK + NW E Sbjct: 913 EKERVEEIVIEEMEKAY----RMHVPLKADCGWGRNWLE 947 >gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1] gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1] Length = 903 Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust. Identities = 327/983 (33%), Positives = 517/983 (52%), Gaps = 102/983 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L DG++ ++RA++ P L+ + G V A GF ++L K+L + + + +A+ FD Sbjct: 6 IVLFDGTNLVHRAYHVLPPLTVRKTGEVVGAAFGFASILIKVLTDLKPDC----YAISFD 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ DYKA RP +P+ L+ QL VR AF +P E GFEADD++ T Sbjct: 62 KKGPTFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLAT 121 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--------------TTCLYDTVKEEKIDIEHVIKKW 172 A EG V I S D D MQLVSP T LYD V K+ Sbjct: 122 RAAAEGMEVIIASGDADSMQLVSPDIRILYPGPAGSFSNTSLYDEAA--------VRAKY 173 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 G+ PE + +AL GD DNIPG+PGIG KTA L++EYG +E+I N +I ++ Sbjct: 174 GLGPEHVADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKK 233 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 + + AE AR S+ L + D+P+ ++ E N +++ + LEF +LI+R+ Sbjct: 234 LADNAEVARQSKILTTIVCDLPLDFSIQECRSEHYNRQKVVDLFRELEFFRLIHRLPGG- 292 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 EN G + T F+ TPQK+ Sbjct: 293 -----------------ENPGGGM-----------TDMFN-------------TPQKV-- 309 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 ++ I N +++ V++L + + + +A ++ A+AIS Sbjct: 310 -------------ETRYIIANGQNLDSIVKRLTETKELALAVSGTSEEAIDARLTALAIS 356 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 + E FI S ++ E L N++ K HN KY Sbjct: 357 PAEG--------EAYFI--SAEFIGSASDGQMFVSEGHPGLIALLTNKNITKTAHNAKYL 406 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531 +L G ++G + D ML +++L G + I + + ++ + Sbjct: 407 MNLLASAGQEIQGLDFDTMLSAHLL--GEKNLGIKDLVFEHFGVEIADVENILTQNGKKK 464 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 S S++ E A ++ +L L +L L+ ++ ++ P++ ++ ME +GI +D Sbjct: 465 SFSASELSEAAQLVADYTFRLKGLFAAQLAETNLIDLFVNVEMPLVPILLGMERSGIMLD 524 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 DLLK ++ ++ + LEE IY +G FN+ SP+QLG ILF +LK P KTKTG + Sbjct: 525 TDLLKGMAEKVGGQIFKLEEAIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTG-YS 583 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A+ L+++ G++ I+ ILE+R L K+KSTY D+LP +N T+R+HT ++ T TG Sbjct: 584 TGAEVLDELK-GEHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATG 642 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S EPNLQNIP++ ++G++IRRAFI+P +++ DYSQI+LR+LAH++ L + F Sbjct: 643 RLSSSEPNLQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAF 702 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIH AA + + +V+ + RR AKT+NF +IYG+S + L + +EA + Sbjct: 703 LKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKF 762 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 IK YF ++P + Y + K+ R NGYVET+ GRR + EINSP +R ER AIN P Sbjct: 763 IKAYFEKYPRVAIYFAEIKHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMP 822 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG++ADI + AM+ + + L++ KL +++LLQ+HDEL+FEVP+ E+ S +++ +M A Sbjct: 823 VQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAELKRMSALLMETMSGA 882 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + +PLKV +K NW + Sbjct: 883 ----VTFEIPLKVELKSGANWGD 901 >gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] Length = 984 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 344/979 (35%), Positives = 527/979 (53%), Gaps = 73/979 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAFYA L+ DG P NA+ G NML +L R E A +FD Sbjct: 66 LLLVDGSSYLYRAFYAMTHLTAP-DGTPTNAVYGVLNMLRRL----RAEQPHDFCACVFD 120 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+E++ DYKA RP +P+ L PQ ++ + G +++ EADD+I T Sbjct: 121 AKGKNFRHELFEDYKATRPPMPDDLRPQADMLPELVELMGWKVLKVPQVEADDVIGTLAV 180 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + V I + DKD+ QLVS L +T+K E +D E V +K+G+ P+++ AL Sbjct: 181 QAAAQKMNVVISTGDKDMAQLVSEHITLVNTMKNETLDSEGVYQKFGVRPDQIRDFLALM 240 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD +DN+PG+ G KTAA L EYG+L+NI+ A K K EN+ LS +L Sbjct: 241 GDKVDNVPGVEKCGEKTAAKWLAEYGSLDNIMRQADGFK-GKIGENLRAALPQLPLSYEL 299 Query: 247 VMLRT--DVPITIP--LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 V ++T D+ +P ++ L + + +L+ + L F + Sbjct: 300 VTIKTDVDLSAELPNGMDDLRRKAPDWAQLVPHFRRLGFKTWLKEA-------------- 345 Query: 303 VLDINTTENKGIAIETE-IDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 EN+ T+ + D+ KT Q + + + P++L Sbjct: 346 -------ENQSAQGHTDDLFADSDAKTVQKQPALPEPGERSIAPRPERL----------- 387 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 Y + + + ++L T +++ ++ + I+I+ D Sbjct: 388 -----DYQTVTTREQLAALTERLAHSSVIGLDTETTSLEPMKAQLVGISIA-FGAGDAAY 441 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 V F + T +I S L+ F EN KIG N+KYD+ V +GI Sbjct: 442 IPVAHTFAEQLDWT------------DIKSSLQPFLENPQLGKIGQNMKYDQHVFANHGI 489 Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQ 537 +++G D ML SY+++S H + ++++WL + T + + IP + + Sbjct: 490 ALQGISGDAMLASYIVES-HLGHGLDELSERWLQLPTITYESLCGKGAKQIPFADVPLDK 548 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E+A ++++ L++ LR ++ +K L +Y+ L+ P+ V+ ME G+ ID + L Q Sbjct: 549 AAEYACQDADFALRIEQHLRTQMD-DKQLAMYQELELPVAQVLFAMERNGVFIDSNELAQ 607 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQ 655 SA++ K L LE + L+G+ FNL+SPKQL DILF ++ P+ KT G + T Sbjct: 608 QSAQLGKELWQLENEAFALAGKPFNLNSPKQLQDILFNQMGLPTKGIKKTAGGSYSTDES 667 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ D P+ K IL+ R L+K+KSTY D LP I T RVHT Y+ A +TGRLAS Sbjct: 668 VLEKL-ADDFPLPKLILQHRSLAKLKSTYTDKLPEMILPATGRVHTNYAQAVAITGRLAS 726 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 PNLQNIPI+T+ G+++RRAF +P + ++SADYSQIELRI+AH++ L F+N+ Sbjct: 727 NNPNLQNIPIRTEQGRRVRRAFCAPEGQMMVSADYSQIELRIMAHLSGDPTLQAAFQNNE 786 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+HR AAE+FGV E ++ + RR+AKTINF +IYG+S F LA L I A +IKRY Sbjct: 787 DVHRRTAAEVFGVPPEHITAEQRRYAKTINFGLIYGMSSFGLAKALGIDNMSAEMFIKRY 846 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+ G+ EY+E+TK R GYVET+FGRR++ +I+ + R ERAAINAP+QG+ Sbjct: 847 FARYTGVAEYMERTKEQARSLGYVETLFGRRLYLPDIHG-SAIRRAAAERAAINAPMQGT 905 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 A+D+ +RAMI V +L + + ++++Q+HDELV +VPE+E+ + M + + Sbjct: 906 ASDLIKRAMIKVQAALAAEQSSAQLVMQVHDELVLQVPEDELAHIKAQLPQWMSD--VGE 963 Query: 956 INLRVPLKVNIKVSNNWQE 974 L VPL + NW + Sbjct: 964 GVLAVPLLAEVGAGKNWDD 982 >gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] Length = 897 Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust. Identities = 325/980 (33%), Positives = 517/980 (52%), Gaps = 100/980 (10%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D IYRA++A P+ R DG +AI GF ML++ + KE + V Sbjct: 4 LFLIDAYGLIYRAYFALIRAPM--RTKDGRNTSAIYGFFRMLFRFV----KEYDPVYCGV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 + D TFR + + YKA R K PE L PQ+P++ +A G + + GFEADD++ T Sbjct: 58 VLDSLTPTFREKTFEAYKATRQKTPEDLHPQIPVIEEILEALGFATVRMNGFEADDVMGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI--DIEHVIKKWGIPPEKMVC 181 +A+ EG ++S DKDL QLV+ + K++ + D E V +KWG+ +++V Sbjct: 118 LAAMAQAEGRPCFVVSGDKDLAQLVTKGVRIVRMDKDDFVILDEEGVKEKWGVRADQIVD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA-ETA 240 AL GD+ DNIPG+ GIG KTA LL EYG+LE + + + R++ LE E A Sbjct: 178 FLALVGDASDNIPGVEGIGEKTARRLLAEYGSLEGVYAHLDELSPSLRKK--LEGGRERA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LSR L +RTD+ +++ +E L + R A + L V + A E Sbjct: 236 FLSRDLATIRTDLELSLTIEDLRRREPEVQRARELFLAYDIRSLAQEVGGS----PAVGE 291 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 L++ G++ E DR + Sbjct: 292 KPTLEVEGPSRAGVSYEVVTDRAS------------------------------------ 315 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 + +WV K G + TD +D + + ++++ + + Sbjct: 316 ----------------LARWVDKALERGVVAVDTETDGLDPLTCRLVGVSLAVDEGR--- 356 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 ++ L+ + + +E+L+ L ++ K+G N+K+D VL R+G Sbjct: 357 -----ACYVPLAAPDVRPLPAD--VVREVLTPL---LASQKVSKVGQNLKFDYHVLRRWG 406 Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS--SIPIDKIS 534 + G F D M+ +++L+S +++ +A+K+L + K++++ S ++P+ Sbjct: 407 VRPEGPFFDTMVAAWLLESDAGRYNLDRLAEKYLGWRTIHYKDVVEKGASFETVPV---- 462 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 ++ +A E++++ L+L +L+ +L L V+ ++ P++ ++++ME GI +D + Sbjct: 463 -AEAGVYAAEDADIALRLSRVLKERLEAGDLGRVFYEMEMPLLSILARMEEWGIGLDGEA 521 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L E+ + + ++E I+DL G +FN+ S KQL ++LF + P KTKTG + T Sbjct: 522 LSAFGRELDERISNIENEIFDLVGHEFNVGSTKQLQEVLFVERGLPPVKKTKTG-FSTDT 580 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE++ D P+ +LE+R L+K+K+TY D LP +N T R+HT++S T TGRL+ Sbjct: 581 SVLEELAAQD-PVAAKVLEYRSLTKLKNTYVDVLPGLVNPETGRLHTWFSQVGTATGRLS 639 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIPIKT+ G++IR AF+ +SADYSQIEL ILAH++ L + F Sbjct: 640 SKDPNLQNIPIKTEEGRRIREAFVPQRGWWFLSADYSQIELVILAHLSGDPALCRAFREG 699 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 D+HR + +FGV E V+P+ RR AKTINF +IYG+S FRL+ +L IPR EA +I Sbjct: 700 EDVHRATGSLLFGVPPETVTPEQRRIAKTINFGVIYGMSAFRLSRELGIPRKEAERFINA 759 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF + G+ +IE+T + GYV T+FGR+ I S + + ER A+N PIQG Sbjct: 760 YFTTYAGVRAFIERTIAEAEEKGYVTTLFGRKRPLPYITSRNKTQKTGAERIAVNTPIQG 819 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 S ADI + AMI + + LA++M+LQ+HDEL+FEVP EE+ +++ ME Sbjct: 820 SGADIIKLAMIDLDAQMRRMGLASRMILQVHDELIFEVPPEELEVMKRLVRERMEGV--- 876 Query: 955 KINLRVPLKVNIKVSNNWQE 974 + L VPL+V I V NW E Sbjct: 877 -VRLSVPLRVEIGVGRNWGE 895 >gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23] gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23] Length = 949 Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust. Identities = 350/999 (35%), Positives = 543/999 (54%), Gaps = 77/999 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M N LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MDSGNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + +E V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 QSPVQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288 E S+ L ++ DVPI + ++ L+ E+ + L S + LEF LI+RV Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDALVREEADENSLRSIFEELEFRTLIDRVLKKDI 293 Query: 289 -------ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341 AT P L + E G+ + F++ + Sbjct: 294 SGNGITSATGSKVATGKSAPSPLPLFPEEGGGM------------QGDLFANFTP----- 336 Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401 + +K LE L+ L+ SY I + Q+ +QKL T S T + Sbjct: 337 DEPGEAKKSNLETLESLTY------SYQLIDTEEKRQEIIQKLLTSKILSLDTETTGTEP 390 Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461 ++ + ++ S + E ++ V + QD K I++ + FENE+ Sbjct: 391 MDAELVGMSFSIAEN--------EAFYV--PVPSDQDEALK------IVNEFRPVFENEN 434 Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517 LK+G NIKYD +VL YG +++G D M+ YVL H + +A+ +L Y Sbjct: 435 SLKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHI 493 Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 E++ + K+ + + V +A E+++V L+L +L +L ++ ++ P+ Sbjct: 494 DELIGPKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPL 553 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 + V+ +E G+ +D + LKQ SA + + +E+ IY+L+GE FN++SPKQ+G++LF K Sbjct: 554 VPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDK 613 Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 LK AK TKTGQ+ T+ + LE + +P+++ ILE R L K+ TY D+LP IN R Sbjct: 614 LKIVEKAKKTKTGQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPR 672 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T RVHT ++ T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIEL Sbjct: 673 TGRVHTSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIEL 732 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH+++ + F ++ DIH AA+++ ++++ V MRR AKT NF IIYGIS F Sbjct: 733 RIMAHLSEDKNMIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVF 792 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA ++ + R EA + I YF +PG+ Y++K+ ++ GYVETIF R+ +INS Sbjct: 793 GLAERMNVDRKEAKELIDGYFETYPGVKVYMDKSIQVAQEKGYVETIFHRKRFLPDINSR 852 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + +R ER AINAPIQGSAADI + AM +++ + + KM+LQ+HDEL F VP Sbjct: 853 NAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVN 912 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E +I++ MEKA + VPLK + NW E Sbjct: 913 EKERVEEIVIEEMEKAY----RMHVPLKADCGWGKNWLE 947 >gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068] gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068] Length = 966 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 331/981 (33%), Positives = 534/981 (54%), Gaps = 46/981 (4%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 ++ ++++D S IY+ F+A P ++ G PV A+ GF + L++N E I + Sbjct: 16 DSTVYVIDAHSLIYQVFHAMPEMTSPS-GQPVGAVQGFVRDMLDLIENRSAEYIVA---- 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD+P+ TFR+ +Y +YK +R ++P L Q+P+++ A GI + I GFEADDI+AT Sbjct: 71 AFDHPSPTFRHTMYENYKVHRDEMPGDLQSQIPIIQQFLDALGITQLSIPGFEADDILAT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 +G ++++DKD QL++ + + K E D ++ WGI P+++V Q Sbjct: 131 LAKRVASDGGRCLVVTSDKDCRQLINDRVQMLNLRKNEIFDDVALMATWGIRPDQVVDFQ 190 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 +L GDS+DN+PG+P IG K A LL +Y LE +L NA ++ KR+EN+ + + A LS Sbjct: 191 SLVGDSVDNVPGVPLIGPKIAQELLAKYETLEGVLDNADQVSGAKRKENLKNFRDQAFLS 250 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 R LV L+ D+ + + + L+ +A F +L+ R+ A P Sbjct: 251 RDLVRLKNDMEFDLDWSSVRVGRYQIEMLMELCRACGFRQLLTRIEKL----AKRGAPAK 306 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 +T + I + DRDT L T +S+ +P +++ P Sbjct: 307 SSRSTGYSSSIPA-PQRDRDTPP-----DELYAGTEAADSQTSPSGSLGP---QVAAAPW 357 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 +Y ++ + ++ + +++ GS T ++ ++ + + D Sbjct: 358 EA-TYRRVESLDQLRTIIDEIKAAGSLVIDTETTSVQPRWAEIVGYSFCYRDG------- 409 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 E + L + ++ + + E+ K+G NIKYD +VL GI + Sbjct: 410 -EAWY--LPIRAPENEQALCLDATAVADLFRPVLEDPAIAKVGQNIKYDMVVLRSAGIEL 466 Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSSIPIDKISDSQVQ 539 RG D M+ Y++D G SH++ +A++ L + EI + + K I +D++ + + Sbjct: 467 RGAAFDTMVADYLIDPGERSHNLDELARRHLGHQNIEIESLIGTGKKQIRMDQVPLAAIT 526 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 ++A E++ V +L +L P+L + L+ ++ L+ P+++V++++E GI++D+ L ++S Sbjct: 527 DYAAEDALVPYRLLPILEPRLEQDGLVPLFRDLEMPLVEVLAELEHRGIKVDRARLVELS 586 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 + S + +LE IY ++ +FN+ S QL +LF LK P KTKTG A+ LE Sbjct: 587 TDFSTKITALENEIYAINHGEFNIDSRLQLAKLLFEDLKLPILKKTKTGP-SMDAEVLED 645 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + + + K +LE+R L+K++STY DSL I+ T RVHT TGRL+S +PN Sbjct: 646 L-ARLHELPKKVLEYRHLAKLRSTYVDSLQELIHPVTGRVHTSLKQDVAATGRLSSQDPN 704 Query: 720 LQNIPIKTDLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 LQNIP++T G+ IR AF P + KL++ADYSQIELR+LAH + L + F + DI Sbjct: 705 LQNIPVRTAEGRAIRSAF-QPGIEGWKLMAADYSQIELRVLAHFSGDAALAEAFASDRDI 763 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H VA++++ V V+P+MRR AK INF +IYG SPF LA L I EAA +I YF Sbjct: 764 HTQVASQVYEVAPGDVTPEMRRSAKAINFGVIYGQSPFGLARSLGIENDEAAAFISAYFA 823 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS----SIRNINERAAINAPIQ 893 ++PG+ +++ +T R+ GYV TI GRR + P + R + ER AIN IQ Sbjct: 824 QYPGVDDFMRETLIGCRKQGYVTTIAGRRRPVTGVRDPHAVNDKRQRTLPERIAINTVIQ 883 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 GSAADI +RAMI+VH+ L++ KL +MLLQIHDEL+FE P EE ++V SM A Sbjct: 884 GSAADIIKRAMITVHRRLKEEKLQARMLLQIHDELLFEFPPEEQGQLRDLVVESMSTAE- 942 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 + VPLK+++K NW + Sbjct: 943 ---KISVPLKIDVKTGLNWAD 960 >gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120] Length = 810 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 316/858 (36%), Positives = 481/858 (56%), Gaps = 67/858 (7%) Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ AL G Sbjct: 7 AEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFLALMG 66 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAETAR 241 DS DNIPG+PG+G KTA LLQ G L+ + +I K + + E A Sbjct: 67 DSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNKEVAY 126 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LS +L ++TDV + + E L ++ L+ K EF + V A +P Sbjct: 127 LSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAKGAKP 186 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 Q +S++D+ ++ + Sbjct: 187 AA------------------------KPQETSVADEAPEVTATV---------------- 206 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 207 -ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAY 264 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 V ++D S++ L LK E+E LK+G N+KYD+ +L YGI Sbjct: 265 IPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGI 315 Query: 482 SMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQ 537 +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I+ + Sbjct: 316 ELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEE 375 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +A E+S+V LQL L + P L K L+V+E ++ P++ V+S++E G++ID +L Sbjct: 376 AGRYAAEDSDVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLH 435 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T+ + Sbjct: 436 NHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEV 495 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGRL+S Sbjct: 496 LEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSST 554 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F D Sbjct: 555 DPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKD 614 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ YF Sbjct: 615 IHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYF 674 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+QG+A Sbjct: 675 ERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTA 734 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 735 ADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---T 790 Query: 957 NLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 791 RLDVPLLVEVGSGENWDQ 808 >gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4] gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4] Length = 949 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 349/999 (34%), Positives = 543/999 (54%), Gaps = 77/999 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M N LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MDSGNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + +E V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 QSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288 E S+ L ++ DVPI + ++ L+ E+ + L S + LEF LI+RV Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDALVREEADENSLRSIFEELEFRTLIDRVLKKDI 293 Query: 289 -------ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341 AT P L + E G+ + F++ + Sbjct: 294 SGNGITSATGSKVATGKSTPSPLPLFPEEGGGM------------QGDLFANFTP----- 336 Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401 + +K LE L+ L+ +Y + + Q+ +QKL T S T + Sbjct: 337 DEPGEAKKSNLETLESLTY------NYQLVDTEEKRQEIIQKLLTSKILSLDTETTGTEP 390 Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461 ++ + ++ S + E ++ V + QD K I++ + FENE+ Sbjct: 391 MDAELVGMSFSIAEN--------EAFYV--PVPSDQDEALK------IVNEFRPVFENEN 434 Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517 LK+G NIKYD +VL YG +++G D M+ YVL H + +A+ +L Y Sbjct: 435 SLKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHI 493 Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 E++ + K+ + + V +A E+++V L+L +L +L ++ ++ P+ Sbjct: 494 DELIGPKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPL 553 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 + V+ +E G+ +D + LKQ SA + + +E+ IY+L+GE FN++SPKQ+G++LF K Sbjct: 554 VPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDK 613 Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 LK AK TKTGQ+ T+ + LE + +P+++ ILE R L K+ TY D+LP IN R Sbjct: 614 LKIVEKAKKTKTGQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPR 672 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T RVHT ++ T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIEL Sbjct: 673 TGRVHTSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIEL 732 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH+++ + F ++ DIH AA+I+ ++++ V MRR AKT NF IIYGIS F Sbjct: 733 RIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKIDLKDVGSDMRRKAKTANFGIIYGISVF 792 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA ++ + R EA + I YF +PG+ Y++K+ ++ GYVETIF R+ +INS Sbjct: 793 GLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSR 852 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + +R ER AINAPIQGSAADI + AM +++ + + KM+LQ+HDEL F VP Sbjct: 853 NAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVN 912 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E +I++ MEKA + VPLK + NW E Sbjct: 913 EKERVEEIVIEEMEKAY----RMHVPLKADCGWGKNWLE 947 >gi|260172660|ref|ZP_05759072.1| DNA polymerase I [Bacteroides sp. D2] gi|315920953|ref|ZP_07917193.1| DNA polymerase I [Bacteroides sp. D2] gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2] Length = 949 Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust. Identities = 349/999 (34%), Positives = 543/999 (54%), Gaps = 77/999 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M N LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MDSGNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + +E V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 QSPTQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVSEFGSIENLLEHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288 E S+ L ++ DVPI + ++ L+ E+ + L S + LEF LI+RV Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDALVREEADENSLRSIFEELEFRTLIDRVLKKDI 293 Query: 289 -------ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341 AT P L + E G+ + F++ + Sbjct: 294 SGNGITSATGSKVATGKSAPSPLPLFPEEGGGM------------QGDLFANFTP----- 336 Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401 + +K LE L+ L+ SY I + ++ +QKL T S T + Sbjct: 337 DEPGEAKKSNLETLESLTY------SYQLIDTEEKRREIIQKLLTSKILSLDTETTGTEP 390 Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461 ++ + ++ S + E ++ V + QD K I++ + FENE+ Sbjct: 391 MDAELVGMSFSIAEN--------EAFYV--PVPSDQDEALK------IVNEFRPVFENEN 434 Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517 LK+G NIKYD +VL YG +++G D M+ YVL H + +A+ +L Y Sbjct: 435 SLKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHI 493 Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 E++ + K+ + + V +A E+++V L+L +L +L ++ ++ P+ Sbjct: 494 DELIGPKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPL 553 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 + V+ +E G+ +D + LKQ SA + + +E+ IY+L+GE FN++SPKQ+G++LF K Sbjct: 554 VPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDK 613 Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 LK AK TKTGQ+ T+ + LE + +P+++ ILE R L K+ TY D+LP IN R Sbjct: 614 LKIVEKAKKTKTGQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPR 672 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T RVHT ++ T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIEL Sbjct: 673 TGRVHTSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIEL 732 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH+++ + F ++ DIH AA+++ ++++ V MRR AKT NF IIYGIS F Sbjct: 733 RIMAHLSEDKNMIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVF 792 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA ++ + R EA + I YF +PG+ Y++K+ ++ GYVETIF R+ +INS Sbjct: 793 GLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSR 852 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + +R ER AINAPIQGSAADI + AM +++ + + KM+LQ+HDEL F VP Sbjct: 853 NAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVN 912 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E +I++ MEKA + VPLK + NW E Sbjct: 913 EKERVEEIVIEEMEKAY----RMHVPLKADCGWGKNWLE 947 >gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] Length = 917 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 332/993 (33%), Positives = 522/993 (52%), Gaps = 112/993 (11%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 + L LVDG YRA++A P G P + + GF +ML ++L + + + Sbjct: 6 RRPRLVLVDGHGLAYRAYHALPPTLATSAGEPTHVVFGFASMLLEVLNDFEPDYVI---- 61 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD +FR ++Y +YKA+RP+ P+ L QL +R A GIP + +G+EADD+I Sbjct: 62 VCFDT-GRSFRQQLYEEYKAHRPETPDDLKHQLERIRQLLDALGIPIVTREGYEADDLIG 120 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPE 177 T A G V I++ D DL+QLV + ++ D + VI+++G PPE Sbjct: 121 TLAARATANGLEVLIVTGDTDLLQLVDEDVRVILPGRQRFGDYRVYDRQAVIERYGFPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 ++ +AL GD DNIPG+PGIG KTA L+Q + +LE +L RI Sbjct: 181 RLPEYKALVGDPSDNIPGVPGIGEKTATRLIQRFSSLEEML---DRI------------- 224 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 ++ PRL L+A T L +R T Sbjct: 225 ---------------------------DEVEPPRLREALRAARETVLASRRLAT------ 251 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTI---KTSQFSSLSDQTSKINSEQTPQKLFLER 354 +V D + T + A + DR+ + + +F SL + PQ Sbjct: 252 ----IVRDADITLDLEQARFGDFDRERVLQLFRELEFRSLV--------PRLPQPR---- 295 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 Q + + ++ D+ V+ LET + + + T + ++ + IA++T Sbjct: 296 -QPVRKTAAPASQRRAVLTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALAT- 353 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 D S+ ++ L HT+ D+ +++L L F + + H+ KYD L Sbjct: 354 --APDRSY-----YVPLG-HTTGDT---QLDIEQVLQRLAPFLRHPEKQRYAHHGKYDAL 402 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSSIPI 530 VL R G + D M+ +Y+L G ++ + +A L + +EI + K + + Sbjct: 403 VLERAGFPRPHIDFDTMIAAYLL--GENAVGLKELAFTKLGWEMEEITELIGRGKKQLTM 460 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 D+ ++V ++A + +L +LRP+L L ++ ++ P+IDV+ ME GI I Sbjct: 461 DRAEIARVTQYACADVEATYRLVEVLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAI 520 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D L+Q+S + L +LE IY+L+G FN++SP+QL +LF +L P G +TKTG + Sbjct: 521 DVPYLEQLSIMLDGQLHALERRIYELAGHPFNINSPQQLSTLLFDELGLPRGKRTKTG-Y 579 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 + + LE + +PI++ ILE+RQL K+KSTY D+LP ++ +T RVHT + T Sbjct: 580 SVSQEVLENLR-DTHPIVEAILEYRQLLKLKSTYVDALPRQVHPQTGRVHTIFHQTVAAT 638 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP--PTKK-------LISADYSQIELRILAHI 761 GRL+S +PNLQNIP + +LG +RRAFI+ P + L+S DYSQIELR++AH Sbjct: 639 GRLSSSDPNLQNIPARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHF 698 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 ++ L + F DIH A+E+FGV ++ V+P+MRR AK +NF I+YG+ + LA Sbjct: 699 SQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDT 758 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 + R +A +I+ YF RFPG+ Y+E+T+ + GYVET+FGRR + EI S + R Sbjct: 759 GMSRQDAQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQ 818 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER A+N P+QG+AADI + AMI+VH++L + L ++MLLQ+HDELV EVPE E+ T + Sbjct: 819 AAERMAVNMPLQGTAADIMKLAMIAVHRALAERGLRSRMLLQVHDELVLEVPESELATTT 878 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ M + + L VPL+V+ K NW + Sbjct: 879 ELVTTRMSRV----VELSVPLEVDAKAGPNWAD 907 >gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185] gi|149130302|gb|EDM21512.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185] Length = 949 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 344/994 (34%), Positives = 540/994 (54%), Gaps = 67/994 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M+ +N LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MESDNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKEIIRAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + ++ V K+ I Sbjct: 115 DDVIGTLATEAGRQGIITYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVDEVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 QSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E S+ L ++ DVPI + ++ L+ E + L + LEF LI+RV Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLDMDSLVREQADEDSLRQIFEELEFRTLIDRVLKK-- 291 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS---DQTSKINSEQ----T 346 EN G I T T + S + L ++ + + T Sbjct: 292 ----------------ENAGNGITTPTGNKTAAEKSNLAPLPLFPEEGGAVQGDLFANFT 335 Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406 + + L+ N Y I + + +QKL T S T + ++ Sbjct: 336 GNEPGEAKNSNLATLETLNCDYQLIDTEEKRTKIIQKLLTSKILSLDTETTGTEPMDAEL 395 Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466 + ++ S + E ++ V Q+ K I++ + FENE+ LK+G Sbjct: 396 VGMSFSIAEN--------EAFYV--PVPADQEEALK------IVNEFRPVFENENSLKVG 439 Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK 522 NIKYD +VL YG+ ++G D M+ YVL H + +A+ +L Y E++ Sbjct: 440 QNIKYDMIVLQNYGVQVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLRYQTIHIDELIG 498 Query: 523 SR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + K+ + ++ V +A E+++V L+L +L +L ++ ++ P++ V+ Sbjct: 499 PKGKNQKNMRDLAPKDVYRYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLV 558 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +E G+ +D + LKQ SA + + ++E+ IY+L+GE FN++SPKQ+G++LF KL+ Sbjct: 559 NIERNGVLLDTEALKQSSAHFTAQMENIEKEIYELAGETFNIASPKQVGEVLFDKLRIVE 618 Query: 642 GAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 AK TKTGQ+ T+ + LE + +P+++ ILE R L K+ TY D+LP IN RT RVH Sbjct: 619 KAKKTKTGQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVH 677 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T ++ T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIELRI+AH Sbjct: 678 TSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAH 737 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ + F ++ DIH AA+I+ ++++ V MRR AKT NF IIYGIS F LA + Sbjct: 738 LSEDKNMIDAFLSNHDIHAATAAKIYKIDLQDVGSDMRRKAKTANFGIIYGISVFGLAER 797 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 + + R EA + I YF +PG+ Y++K+ ++ GYVETIF R+ +INS + +R Sbjct: 798 MNVERKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVR 857 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER AINAPIQGSAADI + AM +++ + + KM+LQ+HDEL F VP EE Sbjct: 858 GYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVEEKERV 917 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I++ ME A + VPLK + NW E Sbjct: 918 EEIVIEEMEHA----YRMHVPLKADCGWGKNWLE 947 >gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] Length = 942 Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust. Identities = 346/993 (34%), Positives = 540/993 (54%), Gaps = 75/993 (7%) Query: 3 KENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 K++ +F++D IYR+++A PL + G ++A+ GF L+ +L++ + Sbjct: 2 KDDVVFILDAYGLIYRSYFAFVGKPLTNST--GKNISAVFGFFKSLYTILRDYEPQ---- 55 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 FAV D TFR+E+Y +YKA R K PE L Q+P++ A GI + GFEADD Sbjct: 56 FFAVAMDSRVPTFRHEMYCEYKATRDKTPEDLHAQIPIIEEILTALGITLMRKDGFEADD 115 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK---IDIEHVIKKWGIPP 176 +IA+ A + IIS+DKDLMQL+ + K + + + V ++WG+PP Sbjct: 116 VIASIAKCASADNKKAVIISSDKDLMQLIDDKITMLKPNKADAWIAFNADDVKEQWGVPP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +M+ +L GD+ DN+PG+ IG KTAA LL EYG+L+ I + +K +++ I+E Sbjct: 176 NQMLDFLSLIGDTADNVPGVKSIGPKTAAKLLDEYGSLDGIYAHTDSLKGAMQKK-IIEG 234 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS------FLKALEFTKLINRVAT 290 E A S+KL+ L LE +L D P L FL+ E L + A Sbjct: 235 KENAYFSKKLIALEDSA-----LEKCVLSDFACPVLDYAAAAKIFLRE-ELPSLARQYAP 288 Query: 291 TYDCDAANIEPVVLDINTT-ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349 D + +V ++ E K A + TT + +S S K Sbjct: 289 NADFVKTDEAFLVRSADSKKEKKQGANSAGANPITTSPLQEIASASGGFKK--------- 339 Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409 N +Y I +++++ + G A+F T ++ ++ + Sbjct: 340 --------------NAGNYRGITEPEELRKLIDAAIAQGFAAFDCETTGLNPLEAE---L 382 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 A +L K + +F + + L Q + ++ +S L + ++ ++ I HN Sbjct: 383 AGFSLALKAEEAFYIP---VKLPPPELQSQAPQPMPLEKAVSELARLWQQKNLTIIMHNG 439 Query: 470 KYDKLVLHRYGISMR---GFEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKS 523 K+D + G+ + D M+ +++LD R+S + S+A L + K+++ Sbjct: 440 KFDYQAMRTAGVFEKTPCAIFDTMIAAWLLDPDRTSFSLDSLASSLLKLQTIAYKDVVPK 499 Query: 524 RK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K S +P + Q +A E++++ LQ + L PKL L +++ L+ P++ +++ Sbjct: 500 GKIFSDVPYE-----QAVAYAAEDADITLQFYEFLLPKLKEYGLFDLFQTLEMPLLPLLA 554 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L + S E+ K ++ E I+D+ G +FN++SPKQL ++LFT+LK P+ Sbjct: 555 EMEIAGIFLKKEELAEFSEELGKEIIVHEREIFDIVGHEFNIASPKQLQEVLFTELKLPT 614 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 G KTKTG + T LE + ++ I ILE+R L+K+KSTY D+LP +K RVHT Sbjct: 615 GKKTKTG-YSTDTSVLE-VLASEHVIPAKILEYRALTKLKSTYTDALPALADKNG-RVHT 671 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 + T TGRL+S +PNLQNIPI+ + G++IR+AF + K LISADY+QIEL ILAH+ Sbjct: 672 SFIQTGTATGRLSSRDPNLQNIPIRDEAGRRIRKAFQAEKGKNLISADYAQIELVILAHL 731 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 ++ L Q F+ D+H AA IFG+ I +V P MRR AKTINF ++YG+S FRL+ L Sbjct: 732 SQDKNLVQAFQEGTDVHAATAALIFGMPIGEVLPDMRRIAKTINFGVMYGMSAFRLSNAL 791 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 RIPR +AAD+I+ YF + G+H ++E+ K R+ GYVET+ GRR + INS + Sbjct: 792 RIPRRQAADFIETYFKTYSGVHIFMEELKESARRKGYVETLMGRRRYIYAINSANKLEQA 851 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER AIN PIQGSAADI + AM+ V +L+ HKL K+LLQ+HDEL+ E PE+E T Sbjct: 852 GAERVAINTPIQGSAADIVKTAMLKVQNALQAHKLQAKLLLQVHDELICEAPEKETETVK 911 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ ME + L VPL+VNI+ W + Sbjct: 912 TLLRQEMESV----VKLLVPLRVNIESGKTWGD 940 >gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] Length = 894 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 338/978 (34%), Positives = 534/978 (54%), Gaps = 98/978 (10%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + ++DG+S I RAFYA P L+ K +G NAI GF ML K++++ + I V Sbjct: 2 EKRIVIIDGNSLINRAFYALPPLTNK-EGQHTNAIYGFVTMLLKVMEDYAPDYIG----V 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A TFR++ Y +YKA R +P L QL ++ A I IE++GFEADD+I T Sbjct: 57 AFDKKAPTFRHKEYTEYKAGRKGMPPELAEQLEPLKQVLDALNIYRIELEGFEADDLIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 E +G I++ D+D +QL S TT + T K E D + V++ + + P + Sbjct: 117 LAKHCEAQGIESLIVTGDRDALQLTSDTTKVLFTKKGISQLEIYDAKKVMEDYEVTPTQF 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+ L GD DNIPG+PG+G KTA LL+++ +EN++ N S I K R+ I E E Sbjct: 177 IDLKGLMGDKSDNIPGVPGVGEKTAIKLLKQFETIENMIQNTSEIAADKLRQKIEENIEM 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS++L + T+V Sbjct: 237 AVLSKRLATIVTNV---------------------------------------------- 250 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 PV +D++ K E I+ + +F+SL + K N EQT Q++S Sbjct: 251 -PVEMDLDILRKKEFDYERLIE---LFRMYEFNSLIPRIKK-NMEQT---------QEIS 296 Query: 360 QYPINN-DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 + N ++ I +T +++ ++++ G K IT+ + + +A+A++T + Sbjct: 297 TANLGNRENIVAIKDTDALKKALEEIREQGQMVLKTITEENNIVTDRIVALAMTTTGE-- 354 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 + +E F D +I+S LK E+EH IGH++K + + + Sbjct: 355 -IQYYIE--FKDFK-------------ESDIISPLKDILEDEHIRIIGHDLKKEIIHFYP 398 Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKSRKSSIPIDKIS 534 Y I + + D M+ Y+L+ +SS+ + +A ++L ++I+ K+ + + Sbjct: 399 YEIHIANLYFDTMVGEYLLNPAKSSYLLKDLALEYLGEEIIDEEKIVGKGKNQLSLWAAP 458 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 +++V+ + VI +L ++ K+ + + +Y ++ P+++V++ ME GI++D+++ Sbjct: 459 ENEVKALLCNHVKVIAELAKYIQEKIEDQGIHKLYYEVELPLVEVLASMEFLGIKVDRNM 518 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L + E + + L IY L+G FN++SPKQLG++LF KL P KTKTG + T A Sbjct: 519 LLALEVEFKEIIDKLTSEIYSLAGISFNINSPKQLGEVLFEKLGLPPTKKTKTG-YSTNA 577 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE++ + II I E+RQ++K+K+TY D L + IN T R+H+ ++ T TGR++ Sbjct: 578 DVLEKLQ-DQHEIIPKISEYRQVTKLKTTYVDGLLSIINPVTNRIHSSFNQTVTATGRIS 636 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S EPNLQNIP++ ++G+++R+ FIS + I ADYSQIELR+LAHIAK L F + Sbjct: 637 STEPNLQNIPVRLEMGRRLRKVFISKEGHEFIDADYSQIELRVLAHIAKDDNLIDAFIKN 696 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH A+EIF V +E+V+ MR AK +NF I+YGIS F L+ L IP S+A YI+ Sbjct: 697 QDIHTRTASEIFEVPMEEVTSLMRGDAKAVNFGIVYGISDFGLSQNLNIPVSKAKKYIES 756 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF ++P I EY+ ++ GYV T+ RR + E+ S +IR+ ER A+N PIQG Sbjct: 757 YFEKYPSIKEYMHNIVEEGKEKGYVVTLLNRRRYLPELKSSNFNIRSFGERIAMNTPIQG 816 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 SAADI + AMI+V+ L+ K++LQ+HDEL+ E PE EI S+I+ SME A Sbjct: 817 SAADIIKIAMIAVYNRLKAENYDAKLILQVHDELIIECPENEIEEVSKILKESMENA--- 873 Query: 955 KINLRVPLKVNIKVSNNW 972 I + VPLKV++ +NNW Sbjct: 874 -IEMVVPLKVDLSYANNW 890 >gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483] gi|156111108|gb|EDO12853.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483] Length = 949 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 348/999 (34%), Positives = 543/999 (54%), Gaps = 77/999 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M N LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MDSGNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + +E V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 QSPTQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLVSEFGSIENLLEHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----- 288 E S+ L ++ DVPI + ++ L+ E+ + L S + LEF LI+RV Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDALVREEADENSLRSIFEELEFRTLIDRVLKKDI 293 Query: 289 -------ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341 AT P L + E G+ + F++ + Sbjct: 294 SGNGITSATGSKVATGKSAPSPLPLFPEEGGGM------------QGDLFANFTP----- 336 Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDA 401 + +K LE L+ L+ +Y I + ++ +QKL T S T + Sbjct: 337 DEPGEAKKSNLETLESLTY------NYQLIDTEEKRRKIIQKLLTSKILSLDTETTGTEP 390 Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEH 461 ++ + ++ S + E ++ V + QD K I++ + FENE+ Sbjct: 391 MDAELVGMSFSIAEN--------EAFYV--PVPSDQDKALK------IVNEFRPVFENEN 434 Query: 462 FLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517 LK+G NIKYD +VL YG +++G D M+ YVL H + +A+ +L Y Sbjct: 435 SLKVGQNIKYDMIVLQNYGATVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHI 493 Query: 518 KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 E++ + K+ + + V +A E+++V L+L +L +L ++ ++ P+ Sbjct: 494 DELIGPKGKNQKNMRDLDPKDVYLYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPL 553 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 + V+ +E G+ +D + LKQ SA + + +E+ IY+L+GE FN++SPKQ+G++LF K Sbjct: 554 VPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDK 613 Query: 637 LKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 LK AK TKTGQ+ T+ + LE + +P+++ ILE R L K+ TY D+LP IN R Sbjct: 614 LKIVEKAKKTKTGQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPR 672 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T RVHT ++ T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIEL Sbjct: 673 TGRVHTSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIEL 732 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH+++ + F ++ DIH AA+++ ++++ V MRR AKT NF IIYGIS F Sbjct: 733 RIMAHLSEDKNMIDAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVF 792 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA ++ + R EA + I YF +PG+ Y++K+ ++ GYVETIF R+ +INS Sbjct: 793 GLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSR 852 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + +R ER AINAPIQGSAADI + AM +++ + + KM+LQ+HDEL F VP Sbjct: 853 NAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVN 912 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E +I++ MEKA + VPLK + NW E Sbjct: 913 EKERVEEIVIEEMEKAY----RMHVPLKADCGWGKNWLE 947 >gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 332/993 (33%), Positives = 521/993 (52%), Gaps = 112/993 (11%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 + L LVDG YRA++A P G P + + GF +ML ++L + + + Sbjct: 6 RRPRLVLVDGHGLAYRAYHALPPTLATSAGEPTHVVFGFASMLLEVLNDFEPDYVI---- 61 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD +FR ++Y +YKA+RP+ P+ L QL +R A GIP + +G+EADD+I Sbjct: 62 VCFDT-GRSFRQQLYEEYKAHRPETPDDLKHQLERIRQLLDALGIPIVTREGYEADDLIG 120 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPE 177 T A G V I++ D DL+QLV + ++ D + VI+++G PPE Sbjct: 121 TLAARATANGLEVLIVTGDTDLLQLVDEDVRVILPGRQRFGDYRVYDRQAVIERYGFPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 ++ +AL GD DNIPG+PGIG KTA L+Q + +LE +L RI Sbjct: 181 RLPEYKALVGDPSDNIPGVPGIGEKTATRLIQRFSSLEEML---DRI------------- 224 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 ++ PRL L+A T L +R T Sbjct: 225 ---------------------------DEVEPPRLREALRAARETVLASRRLAT------ 251 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTI---KTSQFSSLSDQTSKINSEQTPQKLFLER 354 +V D + T + A + DR+ + + +F SL + PQ Sbjct: 252 ----IVRDADITLDLEQARFGDFDRERVLQLFRELEFRSLV--------PRLPQPR---- 295 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 Q + + ++ D+ V+ LET + + + T + ++ + IA++T Sbjct: 296 -QPVRKTAAPASQRRAVLTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALAT- 353 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 D S+ ++ L HT+ D+ +++L L F + + H+ KYD L Sbjct: 354 --APDRSY-----YVPLG-HTTGDT---QLDIEQVLQRLAPFLRHPEKQRYAHHGKYDAL 402 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSSIPI 530 VL R G + D M+ +Y+L G ++ + +A L + +EI + K + + Sbjct: 403 VLERAGFPRPHIDFDTMIAAYLL--GENAVGLKELAFTKLGWEMEEITELIGRGKKQLTM 460 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 D+ ++V ++A + +L +LRP+L L ++ ++ P+IDV+ ME GI I Sbjct: 461 DRAEIARVTQYACADVEATYRLVEVLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAI 520 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D L+Q+S + L +LE IY+L+G FN++SP+QL +LF +L P G +TKTG + Sbjct: 521 DVPYLEQLSIMLDGQLHALERRIYELAGHPFNINSPQQLSTLLFDELGLPRGKRTKTG-Y 579 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 + + LE + +PI++ ILE+RQL K+KSTY D+LP ++ +T RVHT + T Sbjct: 580 SVSQEVLENLR-DTHPIVEAILEYRQLLKLKSTYVDALPRQVHPQTGRVHTIFHQTVAAT 638 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP--PTKK-------LISADYSQIELRILAHI 761 GRL+S +PNLQNIP + +LG +RRAFI+ P + L+S DYSQIELR++AH Sbjct: 639 GRLSSSDPNLQNIPARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHF 698 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 ++ L + F DIH A+E+FGV ++ V+P+MRR AK +NF I+YG+ + LA Sbjct: 699 SQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDT 758 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 + R +A +I+ YF RFPG+ Y+E+T+ + GYVET+FGRR + EI S + R Sbjct: 759 GMSRQDAQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQ 818 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER A+N P+QG+AADI + AMI+VH+ L + L ++MLLQ+HDELV EVPE E+ T + Sbjct: 819 AAERMAVNMPLQGTAADIMKLAMIAVHRPLAERGLRSRMLLQVHDELVLEVPESELATTT 878 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ M + + L VPL+V+ K NW + Sbjct: 879 ELVTTRMSRV----VELSVPLEVDAKAGPNWAD 907 >gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735] gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735] Length = 920 Score = 530 bits (1364), Expect = e-148, Method: Compositional matrix adjust. Identities = 332/986 (33%), Positives = 531/986 (53%), Gaps = 85/986 (8%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 N LFL+D + I+R++YA P ++ K GL +AI GF N L +++ + ++ Sbjct: 2 NKLFLLDAYALIFRSYYALIRAPRINSK--GLNTSAILGFVNTLNEIITKEK----PTYI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR+E +P YKA R + PE + +P ++ +AF IP ++++GFEADD+I Sbjct: 56 GVAFDL-GKTFRHEAFPPYKAQRQETPEDITFSVPFIKDILRAFHIPILQVEGFEADDVI 114 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIP-PE 177 T A KEG A +++ DKD QL+ +Y DI + + +K+GI P Sbjct: 115 GTLATKAGKEGIATYMLTPDKDYGQLIRENVFMYRPRHGGGYDIIGEQEIAEKYGISTPA 174 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ L AL GDS DN PG PG+G KTA L+ E+G+++ ++ + ++K K RE + Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTAVKLINEFGSIDELISHTDKLK-GKMREKVEGAI 233 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E ++S+ L +RTDVP+ + L+ L L+ + +L LEF L N++ Sbjct: 234 EDIKMSKFLATIRTDVPVELNLDELQLQAPDEQKLSEIFAELEFKSLANKI--------- 284 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +N TE K ++ +E+D +++ S++ SE E L+ Sbjct: 285 --------LNKTEQKQKSVNSELD---------LFAVNPHESQVASENAS----FESLKT 323 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + Y I N ++ + T S T + +A ++ + + + + K Sbjct: 324 IKH------DYQLIENQEEAHRICDFFRTKRILSLDTETTSTNAIDAELVGLCFAVEEHK 377 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474 V D +E L Y+ F +E+ LKIG N+KYD Sbjct: 378 A------------FYVAIPNDR-------EEALQYVNIFKPVYEDPSILKIGQNLKYDYE 418 Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIP 529 VL YG+++ G D ML YV+ H++ +A+ L Y E++ R K Sbjct: 419 VLKNYGVTLGGKMFDTMLAHYVIQP-ELHHNMDYMAETLLHYKTIHIDELIGPRGKHQKS 477 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 + + V E+A E++++ LQL +L PKL +++ ++ P++ V++ ME+ G++ Sbjct: 478 MRDLDPKDVYEYAAEDADITLQLKNVLEPKLKETGTENLFWNIEMPLVPVLADMELNGVR 537 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTG 648 +D D L S ++ + LE+ IY+ +GE FN+SSPKQ+GDILF K++ KTKTG Sbjct: 538 LDTDALHDTSMIFTERMNRLEQQIYEKAGETFNISSPKQVGDILFGKMQIMEKPKKTKTG 597 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q+ T+ + L+ + +PI+ +IL++R L K+ TY ++LP INKRT +HT ++ A T Sbjct: 598 QYVTSEEVLQSLRA-KHPIVADILDYRGLKKLLGTYVEALPKLINKRTGHIHTSFNQALT 656 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++++ G++IR+ F+ SADYSQIELRI+AH++ + Sbjct: 657 ATGRLSSSDPNLQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMI 716 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F DIH AA+I+ +I V+ + R+ AK NF IIYGI+ + LA ++ I EA Sbjct: 717 EAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYGITTYGLAQRMEIDNREA 776 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 + I+ YF FP + Y+E+ K R+ GY ET+FGRR + +I S ++R ER AI Sbjct: 777 RELIEGYFATFPKVRAYMEQAKEEARRKGYAETLFGRRRYLPDITSKNGTVRGFAERNAI 836 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQGS ADI + AMI + + + + +KM+LQ+HDEL F V +E +I++ M Sbjct: 837 NAPIQGSEADIIKIAMIRIWQRFKAENIRSKMILQVHDELNFSVYPDEKERVEKIVLEEM 896 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 + A L+VPL + NW E Sbjct: 897 QGA----YQLQVPLIADAGWGKNWLE 918 >gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301] Length = 958 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 336/990 (33%), Positives = 540/990 (54%), Gaps = 59/990 (5%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFLVD + I++ +YA P+ R +G+ + + GF K L++ +K V Sbjct: 4 LFLVDAYALIFKYYYAFLGRPM--RNREGMNTSVVFGFV----KFLRDIQKRERPDLLGV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD +FR +I+P+YKANR + PE +L +P V+ A IP +E+ G+EADD+I T Sbjct: 58 AFDPKGGSFRRDIFPEYKANRSETPEDILLSIPYVKRVLDAMCIPILEVAGYEADDVIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGI-PPEK 178 + + G+ V +++ DKD QLV +Y E +D E + +K+GI P+ Sbjct: 118 LSQKGVEAGYDVYMVTPDKDYGQLVRDNCRIYKQRGAEGSIEIVDREAIREKYGIDDPQL 177 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + + AL GD+ DNIPG+PGIG K A L++E+G +ENIL N +I K+ E I +A+ Sbjct: 178 VRDILALWGDASDNIPGVPGIGEKIACKLVREWGTVENILENVGKIPGKQ-GEKIAGWAD 236 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 RL+++L + DVPI E L + D + +L L+F +N + + A Sbjct: 237 NLRLAKRLTTICLDVPIPFREEDLTVCDPHIDQLRGIFAELDFKAFMNDL-----TNLAP 291 Query: 299 IEPVVLDINTTENKGIA---IETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 EP+ +A Q + D + + Q L+ Sbjct: 292 AEPLPEGPRQEAQTQLAEMARAKSAAAKKAALAGQGNLFGDPVVPLPAAQEVPVAELQAE 351 Query: 356 QKLSQYPINNDS---YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 + Q+ + YT + +++ V + F T D F+ + + ++++ Sbjct: 352 AEAIQFRTAQTTPHEYTLVETAAQLREVVAAVGRYPEFCFDTETTGFDIFNDRIVGLSLA 411 Query: 413 TLDQKDDTSFKVETI-FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471 FK + F++ K+T E ++ FE+E KIG NIK+ Sbjct: 412 V------EPFKAWYVPFLE-----------KDT--PEYAEIVRPLFEDEKIAKIGQNIKF 452 Query: 472 DKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSS 527 D +VL R GI++RG D M++ Y+LD S H++ ++A+K+L+Y EI + Sbjct: 453 DLMVLRRLGITIRGRMYDTMILHYLLDP-ESRHNMNALAEKYLNYKPIEIETLIGKGSKQ 511 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 + +D ++ +V+E+A E+++V LQL L P + L H+Y +++PMI V++ +E+ G Sbjct: 512 LTMDLVNVERVKEYAAEDADVTLQLKQALYPMIEQIGLQHLYFEIEEPMIAVLADIEMAG 571 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAK-T 645 ++ID + L + E+++ L LE I +GE N++S +QLG++LF K++ K T Sbjct: 572 MRIDSEALAVYAVELNRKLAELEAAIRTEAGEPNLNINSARQLGEVLFGKMRIAEKPKMT 631 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KT Q+ T +D Q+ + I+ ILE+R + K+ STY ++LP +N+ T R+HT ++ Sbjct: 632 KTKQF-CTDEDYLQLFARKHRIVDLILEYRGVKKLLSTYVEALPQLVNRSTGRIHTSFNQ 690 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKI 764 A T TGRL+S PNLQNIP++ D+G++IR+AFI S L+SADYSQ+ELR++AH++ Sbjct: 691 AVTATGRLSSTNPNLQNIPVRDDMGRRIRKAFIPSDDDHLLLSADYSQVELRLMAHLSGD 750 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L FE+ DIH AA++F +++V+ + RR AKT NF IIYGIS F L+ +L IP Sbjct: 751 ESLIAAFEHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFGIIYGISAFGLSQRLEIP 810 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R EA + I YF +PG+ +Y++ ++ G+V TIFGRR + ++I S + R + E Sbjct: 811 RKEAKEIIDGYFASYPGVKKYMDNVVEKAKEEGFVSTIFGRRRYLNDIASHNAIARGLAE 870 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R A+NAPIQGSAADI + AMI+VH+ + ++++LQ+HDELV ++ E + I+ Sbjct: 871 RNAVNAPIQGSAADIMKIAMINVHRRFAAEGIRSRVILQVHDELVVDMLRSEQERVTAIV 930 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A L+V L + V NW E Sbjct: 931 TECMESAA----QLKVRLIADAGVGGNWLE 956 >gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302] gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302] Length = 920 Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust. Identities = 332/986 (33%), Positives = 528/986 (53%), Gaps = 85/986 (8%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 N LFL+D + I+R++YA P ++ K GL +AI GF N L +++ + ++ Sbjct: 2 NKLFLLDAYALIFRSYYALIRAPRINSK--GLNTSAILGFVNTLNEIITKEK----PTYI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR+E +P YKA R + PE + +P ++ +AF IP ++++GFEADD+I Sbjct: 56 GVAFDL-GKTFRHEAFPPYKAQRQETPEDITLSVPFIKDILRAFHIPILQVEGFEADDVI 114 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIP-PE 177 T A KEG A +++ DKD QL+ +Y DI + + +K+GI P Sbjct: 115 GTLATKAGKEGIATYMLTPDKDYGQLIRENVFMYRPRHGGGYDIIGEQEIAEKYGISTPA 174 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ L AL GDS DN PG PG+G KTA L+ E+G+++ ++ + ++K K RE + Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTAVKLINEFGSIDELISHTDKLK-GKMREKVEGAI 233 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E ++S+ L +RTDVP+ + L+ L L+ + +L LEF L N++ Sbjct: 234 EDIKMSKFLATIRTDVPVELNLDELQLQAPDEQKLSEIFAELEFKSLANKI--------- 284 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +N TE K + +E+D +++ S++ SE E L+ Sbjct: 285 --------LNKTEQKQKLVNSELD---------LFAVNPHESQVASENAS----FESLKT 323 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + Y I N ++ + T S T + +A ++ + + + + K Sbjct: 324 IKH------DYQLIDNQEEAHRICDFFRTKRILSLDTETTSTNAIDAELVGLCFAVEEHK 377 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF---FENEHFLKIGHNIKYDKL 474 V D +E L Y+ F +E+ LKIG N+KYD Sbjct: 378 A------------FYVAIPNDR-------EEALQYVNIFKPVYEDPSILKIGQNLKYDYE 418 Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSIP 529 VL YG+++ G D ML YV+ H++ +A+ L Y E++ R K Sbjct: 419 VLKNYGVTLGGKMFDTMLAHYVIQP-ELHHNMDYMAETLLHYKTIHIDELIGPRGKHQKS 477 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 + + V E+A E++++ LQL +L PKL +++ ++ P++ V++ ME+ G++ Sbjct: 478 MRDLDPKDVYEYAAEDADITLQLKNVLEPKLKETGTENLFWNIEMPLVPVLADMELNGVR 537 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK-FPSGAKTKTG 648 +D D L S ++ + LE+ IY+ +GE FN+SSPKQ+GDILF K++ KTKTG Sbjct: 538 LDTDALHDTSMIFTERMNRLEQQIYEKAGETFNISSPKQVGDILFGKMQIMEKPKKTKTG 597 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q+ T + L+ + +PI+ +IL++R L K+ TY ++LP INKRT +HT ++ A T Sbjct: 598 QYVTNEEVLQSLRA-KHPIVADILDYRGLKKLLGTYVEALPKLINKRTGHIHTSFNQALT 656 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP++++ G++IR+ F+ SADYSQIELRI+AH++ + Sbjct: 657 ATGRLSSSDPNLQNIPVRSEDGKEIRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMI 716 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F DIH AA+I+ +I V+ + R+ AK NF IIYGI+ + LA ++ I EA Sbjct: 717 EAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYGITTYGLAQRMEIDNREA 776 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 + I+ YF FP + Y+E+ K R+ GY ET+FGRR + +I S ++R ER AI Sbjct: 777 RELIEGYFATFPKVRAYMEQAKEEARRKGYAETLFGRRRYLPDITSKNGTVRGFAERNAI 836 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQGS ADI + AMI + + + +KM+LQ+HDEL F V +E +I++ M Sbjct: 837 NAPIQGSEADIIKIAMIRIWQRFRAENIRSKMILQVHDELNFSVYPDEKERVEKIVLEEM 896 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 + A L+VPL + NW E Sbjct: 897 QGA----YQLQVPLIADAGWGKNWLE 918 >gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429] gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429] Length = 890 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 348/992 (35%), Positives = 551/992 (55%), Gaps = 128/992 (12%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQ---NSRKESIASHFA 62 LFL DG+ +YRAFYA + G+ NA+ G ML K L+ N K++ A Sbjct: 3 ELFLFDGTGLVYRAFYAIDQFLKTSTGMHTNALYGIAKMLIKFLKEHVNMEKDACA---- 58 Query: 63 VIFDYPAVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 I D + R EI DYK+NRP+ P+++L QLP + AFG+ +++ G+EADDII Sbjct: 59 FILDSKGGSKKRKEILKDYKSNRPETPDLILEQLPYIEEFVDAFGVKVLKLLGYEADDII 118 Query: 122 ATYTYIAEKEGFA---VTIISTDKDLMQLVSPTTCLYDTVKEEKI------DIEHVIKKW 172 AT IA++ A V II+ DKDL+QLV ++ E I D + V +K+ Sbjct: 119 AT---IAKRFCNAFEKVNIITGDKDLLQLVDEKVYVWRI--ERGITELVLYDRKKVFEKY 173 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 G+ PE+ +L GD IDNIPG+ GIG KTA LL++YG ++ +L N + +K ++ Sbjct: 174 GVFPEQFGDYLSLVGDQIDNIPGVKGIGKKTAVSLLKKYGTIDEVLKNKKLLTEKLQK-- 231 Query: 233 ILEYA-ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 +LE A E+ SR+LV L DVP+ + +E LI + + +L+ LK EF+ +I Sbjct: 232 LLENATESLEKSRQLVQLIYDVPLDVNIEDLIYKGYDSKKLLVVLKKYEFSSII------ 285 Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351 K + ++ E ++ TI +NSE+ KL Sbjct: 286 --------------------KELGLKEEFEKKYTI--------------VNSEKELSKL- 310 Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411 +R+ ++ + I+ + T ++D F +K + ++I Sbjct: 311 RKRIDEVKTFSIDTE-----------------------------TTSLDPFSAKLVGVSI 341 Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIK 470 ST + E +I +S H S+ N LTKEI L +LK+ E E + +G N+K Sbjct: 342 STNEG--------EAYYIPIS-HVSE-----NNLTKEIVLKFLKEILECERYNIVGQNLK 387 Query: 471 YDKLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528 +D V GI + F D M+ +Y+++ +++ +A K+L Y + +++ Sbjct: 388 FDYKVFMVNGIEPQIPHF-DTMVAAYLINPEERRYNLEELALKYLGYKMISFEELVDNNM 446 Query: 529 PI-----DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 P+ IS + E++ E+ ++ +L+ L K I E + ++ ++ P+I+V++QM Sbjct: 447 PLFGNDFSFISIEKAAEYSCEDVDITFRLYSYL-SKYIGE-MKELFYNIEMPLINVLAQM 504 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E+ G+ D D LK++S + + LEE I+++SGE+FN++S KQ+ +ILF KLK P Sbjct: 505 ELNGVYFDVDYLKELSKRYEEEMKKLEEKIFEISGEQFNINSSKQVAEILFEKLKLPIVK 564 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KT TG+ T A+ LE++ D I + ILE+R+ K+KSTY DS+P+ +N T RVH+ + Sbjct: 565 KTATGRNSTNAEVLEEL-AKDYEIARLILEYRKFQKLKSTYVDSIPSSVNITTNRVHSSF 623 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHI 761 T TGRL+S PNLQN+P +++ G++IR A + P + ++ ADYSQIELR+LAH+ Sbjct: 624 HQTGTSTGRLSSSAPNLQNLPTRSEEGKEIRHA-VKPQFENWYIVGADYSQIELRVLAHM 682 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 ++ L FEN DIH + A++IF V+ V+ MRR K INF+IIYGISP+ L+ ++ Sbjct: 683 SEDEKLLDAFENDYDIHTITASKIFNVSELMVTEDMRRIGKMINFAIIYGISPYGLSRRI 742 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 + +E I YF + G+ E+I+KT +F ++NG+V+T+FGR+ ++ ++ Sbjct: 743 GLNVNETKKIIDNYFKYYQGVFEFIKKTIDFAKKNGFVKTLFGRKRFIPQLKLKNKNLIQ 802 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER AIN P+QG+AADI + AM+ VH L+ + L TK++LQ+HDELVFEVP +E+ Sbjct: 803 EGERIAINTPVQGTAADIIKIAMVKVHNELKRNSLKTKLILQVHDELVFEVPFDELQIVK 862 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +II ME A + L+VPLKV++ W+ Sbjct: 863 EIIKDKMENA----VKLKVPLKVDLYEGREWE 890 >gi|332298700|ref|YP_004440622.1| DNA polymerase I [Treponema brennaborense DSM 12168] gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168] Length = 926 Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust. Identities = 345/992 (34%), Positives = 533/992 (53%), Gaps = 96/992 (9%) Query: 4 ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 ++ L+++D IYR++YA PL + DG V+A+ GF +L + + IA+ Sbjct: 8 DSTLYILDSYGLIYRSYYAFINRPLTDK--DGKNVSAVFGFFRNFKAVLDHYKPRYIAAA 65 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 F D TFR+E+Y DYKA R K PE L Q+P++ A GIP + GFEADD+ Sbjct: 66 F----DSRKATFRHEMYADYKATRQKTPEDLHAQVPVIEEILTALGIPVLRCDGFEADDV 121 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPE 177 IAT + E I+S DKDLMQLV+ TT + K +I + V +WG+ PE Sbjct: 122 IATIASVCGAENRCCRILSADKDLMQLVNDTTQILKPDKNGGWEIVGKDGVKAEWGVEPE 181 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 M+ L +L GDS DN+PG+ G+G KTA LL EYG+L+ I +A I + I Sbjct: 182 LMLDLLSLIGDSSDNVPGVSGVGIKTALKLLDEYGSLDGIFAHADDISGAVGNK-IRAGK 240 Query: 238 ETARLSRKLVMLRTDVPI--TIP-LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 + A S+ L+ LR DVP+ +P + L+ RL+ F + VA Y Sbjct: 241 DAAYFSKSLIALRYDVPVDTCVPSFGTVSLDYEAASRLL-------FRYGVPAVAKQY-- 291 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 A+ P + ++KG T I P + E Sbjct: 292 -ASVPLPAGSETEAIQSKG-----------------------PTGLI-----PDEPVFEE 322 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKL---ETIGSASFKIITDTMDAFHSKPIAIAI 411 L K N Y + + + ++ ++ E I A+F TD++D H++ + ++ Sbjct: 323 LTK------NTGDYMAVTSIAVLASYIDEILASEPI-EAAFDCETDSLDRIHTRIVGFSL 375 Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSY--LKKFFENEHFLKIGHNI 469 S ++ T I++ LSV D+ TL ++ ++ L++ F HN Sbjct: 376 S---RRAGTG-----IYVPLSV---PDALLTQTLIEKQDAFVQLERLFSVPACTLAMHNG 424 Query: 470 KYDKLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-----YTRKEILK 522 K+D VL G++ D M+ +++LD RS++ + ++A L YT Sbjct: 425 KFDYEVLRSNGLAEPRCRIADTMVAAWLLDPDRSAYSLEALAADKLGLETIPYTDVVPKG 484 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 S + IP++ Q +A E++++ QL+ L P+L KL ++ L+ P++ ++++ Sbjct: 485 STFADIPLE-----QAVPYAAEDADLTWQLYRLFLPRLAAAKLGDLFWNLEMPVLPILAE 539 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME+ GI I++ L E++ + + IY+L G +FN++S KQL D+LF + K P G Sbjct: 540 MELDGIHIEKSELISYGEELTAEIERIRREIYELVGHEFNVASTKQLQDVLFEERKLPPG 599 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T LE + D P+ + IL++R +K+ S+Y D+LP ++ R+HT Sbjct: 600 KKTKTG-YSTDTGVLETLAALD-PVPRKILDYRLKTKLFSSYVDTLPLMVDG-NDRIHTS 656 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 + T TGRL+S EPNLQNIP++ + G++IR AF + P +LISADYSQIEL ILAH++ Sbjct: 657 FIQTGTATGRLSSREPNLQNIPVRDEDGRRIRLAFTAEPGCQLISADYSQIELVILAHLS 716 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 L F D+HR AA IFGV + V+P MRR AKTINF ++YG+S FRLA L Sbjct: 717 GDPNLCAAFSGGTDVHRATAALIFGVQPDAVTPDMRRTAKTINFGVMYGMSAFRLAGALG 776 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IPR++AA++I+ YF + G+ ++ + N +Q+G+VETIFGRR + INS ++ Sbjct: 777 IPRTQAAEFIEAYFKTYAGVRNFMNEMVNAAQQSGFVETIFGRRRYIRAINSSSKIEKSG 836 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER A+N PIQGSAADI ++AMI V +L+ ++LLQ+HDEL+ E P+E + Sbjct: 837 AERVAVNTPIQGSAADIVKKAMIDVAAALKKTGSPARLLLQVHDELILECPQESAAETAS 896 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I +ME ++LRVPLKV++++ W + Sbjct: 897 LIKQTMENV----VSLRVPLKVSVEIGPRWGD 924 >gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium] Length = 944 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 348/994 (35%), Positives = 549/994 (55%), Gaps = 81/994 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYRA +A P + K GL +A+ GF N+L ++L+ + +H A Sbjct: 4 LFLLDSMALIYRAHFAFINNPRQTSK--GLDTSAVLGFINVLLEILKKEK----PTHIAA 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A TFR+ Y YKANRP PE + +P +++ +A IP ++++G+EADD+I T Sbjct: 58 AFDLSAPTFRHIEYTAYKANRPTQPEGITAGIPYIKMLLKAMNIPILQLEGYEADDVIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-----DTVKEEKIDIEHVIKKWGIPP-E 177 + ++++DKD QL+ E + ++K+GI E Sbjct: 118 IAKKLSAPDLEIYMMTSDKDYCQLLEENRIFMFRPASKFSPNEVWGVSKALEKFGIKRVE 177 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ + L GD++DNIPG+PG+G KTA LL+EY N+ENI+ N +K K +E++ ++ Sbjct: 178 QVIDMLGLQGDAVDNIPGLPGVGEKTAQKLLEEYDNIENIIANVQNLK-GKLKESVELHS 236 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS+KL + +VP+ L+ +L++ N L L LEF + R+ A Sbjct: 237 DKALLSKKLATIDINVPLVFSLDDFLLQEPNKEDLSDLLDELEFKTIKTRIL------GA 290 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ- 356 + E T + +T T+Q ++LSD T +T ++ + Sbjct: 291 SEEEKAAKKPTKKAPATGQMDMFGNVSTPNTTQNTTLSDDT------ETTSTYHIDNINT 344 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 KL QY + I + Q +Q LE F T ++ A ++ + +A+S Sbjct: 345 KLHQYHL-------IDTPEKRQSLIQFLENQTEFCFDTETTSLVAIEAELVGLALS---- 393 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 + E ++ +Q T+ IL + E+E+ KIG N+KYD VL Sbjct: 394 ----YYAGEAYYVPFPADKAQ--------TQAILEEFRGVLESENIKKIGQNLKYDITVL 441 Query: 477 HRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI--LKSRKSS--IPID 531 +Y I ++G D ML SY+LD + H + ++A+K+L+Y+ +I L +KS+ Sbjct: 442 KKYNIEIKGECFDTMLASYLLDPD-NRHSMDAMAEKYLNYSPVKIDTLIGKKSTKNTTQG 500 Query: 532 KISDSQVQ---EHAIENSNVILQLWLLLRPKL----IVEKLLHVYERLDKPMIDVVSQME 584 + D +VQ E+A E++++ LQL PK+ I+EKL ++ ++ P++ V++ +E Sbjct: 501 NMRDVEVQKVVEYAGEDADITLQLKEYFAPKVAERPILEKL---FKTVEMPLMHVLAHIE 557 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGA 643 TG++ID L + S + K++ LE+ IY LSGE FN++SP+QLG +LF KL + Sbjct: 558 ATGVRIDTQALAESSEILDKDIKILEQTIYTLSGEVFNIASPQQLGKVLFEKLNLMKNPP 617 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KTKTGQ+ T + L ++ DN I++ ILE R+L K+KSTY D+LP ++K R+HT Y Sbjct: 618 KTKTGQYATGEEVLTKLT--DNEIVQQILEIRELQKLKSTYVDALPALVSKIDGRLHTSY 675 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAH 760 + A TGRL+S PNLQNIPIKT G++IR+AFI PT ++SADYSQIELR++A Sbjct: 676 NQAVVATGRLSSTNPNLQNIPIKTAKGREIRKAFI--PTDDDFVILSADYSQIELRLIAA 733 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ + + F N DIH A++I+ ++I++V+ MRR AKT NF+I+YG S F L+ Q Sbjct: 734 FSQDETMMEAFNNGTDIHTATASKIYKIDIQEVTADMRRMAKTANFAILYGSSAFNLSAQ 793 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L+I SEA I Y+ F + ++ ++ RQ Y ET GRR + IN + + Sbjct: 794 LKISTSEAKKLIDSYYGEFSAVKKFKDEMIQKARQFEYAETFLGRRRYLAGING-GAMVS 852 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+N+PIQG+AAD+ + AMI +H+ + K+ +KM+LQ+HDELVF+ + EI Sbjct: 853 GQAERNAVNSPIQGTAADMIKLAMIDIHRFMMREKMQSKMILQVHDELVFDAHKSEIDFL 912 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++ ME A L L V + V V NW E Sbjct: 913 KENVIKLMENALL----LPVRIGVEAGVGKNWLE 942 >gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22] gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a] gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22] gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a] Length = 949 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 343/987 (34%), Positives = 538/987 (54%), Gaps = 53/987 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M N LFL+D + IYRA+YA P ++ K G +AI GF N L ++L K+ Sbjct: 1 MDSSNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL----KKEN 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + +E V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 QSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E S+ L ++ DVPI + ++ L+ E+ + L S + LEF LI+RV Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDSLVREEADEDSLRSIFEELEFRTLIDRVLKKEV 293 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 + T ++ + + I+ F++ + N +K LE Sbjct: 294 SGNGITSTPKSKVATGKSAPSPLPLFPEEGGGIQGDLFANFTP-----NEPNEAKKSNLE 348 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 L+ S+ +Y I K ++ +QKL T S T + ++ + ++ S Sbjct: 349 TLESQSR------NYQLIDTEKKRREIIQKLLTSKILSLDTETTETEPMDAELVGMSFSI 402 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 + E ++ V + +D K I+ + FENE+ LK+G NIKYD Sbjct: 403 AEN--------EAFYV--PVPSDRDEALK------IVKEFRPVFENENSLKVGQNIKYDM 446 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528 +VL YG ++G D M+ YVL H + +A+ +L Y E++ + K+ Sbjct: 447 IVLQNYGAVVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 505 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + + V +A E++++ L+L +L +L ++ ++ P++ V+ +E G+ Sbjct: 506 NMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGV 565 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647 +D + L+Q SA + + +E+ IY+L+GE FN++SPKQ+G++LF KLK AK TKT Sbjct: 566 LLDTEALQQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDKLKIVEKAKKTKT 625 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQ+ T+ + LE + +P+++ ILE R L K+ TY D+LP IN RT RVHT ++ Sbjct: 626 GQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPLLINPRTGRVHTSFNQTV 684 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIELRI+AH+++ + Sbjct: 685 TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F ++ DIH AA+I+ ++++ V MRR AKT NF IIYGIS F LA ++ + R E Sbjct: 745 IDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKE 804 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A + I YF +PG+ Y++K+ ++ GYVETIF R+ +INS + +R ER A Sbjct: 805 AKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNA 864 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQGSAADI + AM +++ + + KM+LQ+HDEL F VP E +I++ Sbjct: 865 INAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEE 924 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 MEKA + VPLK + NW E Sbjct: 925 MEKAY----RMHVPLKADCGWGKNWLE 947 >gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 331/993 (33%), Positives = 520/993 (52%), Gaps = 112/993 (11%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 + L LVDG YRA++A P G P + + GF +ML ++L + + + Sbjct: 6 RRPRLVLVDGHGLAYRAYHALPPTLATSAGEPTHVVFGFASMLLEVLNDFEPD----YVI 61 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD +FR ++Y +YKA+RP+ P+ L QL +R A GIP + +G+EADD+I Sbjct: 62 VCFDT-GRSFRQQLYEEYKAHRPETPDDLKHQLERIRQLLDALGIPIVTREGYEADDLIG 120 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPE 177 T A G V I++ D DL+QLV + ++ D + VI+++G PPE Sbjct: 121 TLAARATANGLEVLIVTGDTDLLQLVDEDVRVILPGRQRFGDYRVYDRQAVIERYGFPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 ++ +AL GD DNIPG+PGIG KTA L+Q + +LE +L RI Sbjct: 181 RLPEYKALVGDPSDNIPGVPGIGEKTATRLIQRFSSLEEML---DRI------------- 224 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 ++ PRL L+A T L +R T Sbjct: 225 ---------------------------DEVEPPRLREALRAARETVLASRRLAT------ 251 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTI---KTSQFSSLSDQTSKINSEQTPQKLFLER 354 +V D + T + A + DR+ + + +F SL + PQ Sbjct: 252 ----IVRDADITLDLEQARFGDFDRERVLQLFRELEFRSLV--------PRLPQPR---- 295 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 Q + + ++ D+ V+ LET + + + T + ++ + IA++T Sbjct: 296 -QPVRKTAAPASQRRAVLTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALAT- 353 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 D S+ ++ L HT+ D+ +++L L F + + H+ KYD L Sbjct: 354 --APDRSY-----YVPLG-HTTGDT---QLDIEQVLQRLAPFLRHPEKQRYAHHGKYDAL 402 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSSIPI 530 VL R G + D M+ +Y+L G ++ + +A L + +EI + K + + Sbjct: 403 VLERAGFPRPHIDFDTMIAAYLL--GENAVGLKELAFTKLGWEMEEITELIGRGKKQLTM 460 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 D+ ++V ++A + +L +LRP+L L ++ ++ P+IDV+ ME GI I Sbjct: 461 DRAEIARVTQYACADVEATYRLVEVLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAI 520 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D L+Q+S + L +LE IY+L+G N++SP+QL +LF +L P G +TKTG + Sbjct: 521 DVPYLEQLSIMLDGQLHALERRIYELAGHPLNINSPQQLSTLLFDELGLPRGKRTKTG-Y 579 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 + + LE + +PI++ ILE+RQL K+KSTY D+LP ++ +T RVHT + T Sbjct: 580 SVSQEVLENLR-DTHPIVEAILEYRQLLKLKSTYVDALPRQVHPQTGRVHTIFHQTVAAT 638 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISP--PTKK-------LISADYSQIELRILAHI 761 GRL+S +PNLQNIP + +LG +RRAFI+ P + L+S DYSQIELR++AH Sbjct: 639 GRLSSSDPNLQNIPARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHF 698 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 ++ L + F DIH A+E+FGV ++ V+P+MRR AK +NF I+YG+ + LA Sbjct: 699 SQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDT 758 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 + R +A +I+ YF RFPG+ Y+E+T+ + GYVET+FGRR + EI S + R Sbjct: 759 GMSRQDAQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQ 818 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER A+N P+QG+AADI + AMI+VH+ L + L ++MLLQ+HDELV EVPE E+ T + Sbjct: 819 AAERMAVNMPLQGTAADIMKLAMIAVHRPLAERGLRSRMLLQVHDELVLEVPESELATTT 878 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ M + + L VPL+V+ K NW + Sbjct: 879 ELVTTRMSRV----VELSVPLEVDAKAGPNWAD 907 >gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22] gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A] gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22] Length = 949 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 344/987 (34%), Positives = 540/987 (54%), Gaps = 53/987 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M N LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MDSSNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + +E V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 QSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E S+ L ++ DVPI + ++ L+ E+ + L S + LEF LI+RV Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDSLVREEADEDSLRSIFEELEFRTLIDRVLKKEV 293 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 + T ++ + + I+ F++ + N +K LE Sbjct: 294 SGNGITSTPKSKVATGKSAPSPLPLFPEEGGGIQGDLFANFTP-----NEPNEAKKSNLE 348 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 L+ S+ +Y I K ++ +QKL T S T + ++ + ++ S Sbjct: 349 TLESQSR------NYQLIDTEKKRREIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSI 402 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 + E ++ V + +D K I+ + FENE+ LK+G NIKYD Sbjct: 403 AEN--------EAFYV--PVPSDRDEALK------IVKEFRPVFENENSLKVGQNIKYDM 446 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528 +VL YG ++G D M+ YVL H + +A+ +L Y E++ + K+ Sbjct: 447 IVLQNYGAVVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 505 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + + V +A E++++ L+L +L +L ++ ++ P++ V+ +E G+ Sbjct: 506 NMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGV 565 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647 +D + L+Q SA + + +E+ IY+L+GE FN++SPKQ+G++LF KLK AK TKT Sbjct: 566 LLDTEALQQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDKLKIVEKAKKTKT 625 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQ+ T+ + LE + +P+++ ILE R L K+ TY D+LP IN RT RVHT ++ Sbjct: 626 GQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPLLINPRTGRVHTSFNQTV 684 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIELRI+AH+++ + Sbjct: 685 TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F ++ DIH AA+I+ ++++ V MRR AKT NF IIYGIS F LA ++ + R E Sbjct: 745 IDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKE 804 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A + I YF +PG+ Y++K+ ++ GYVETIF R+ +INS + +R ER A Sbjct: 805 AKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNA 864 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQGSAADI + AM +++ + + KM+LQ+HDEL F VP E +I++ Sbjct: 865 INAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEE 924 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 MEKA + VPLK + NW E Sbjct: 925 MEKAY----RMHVPLKADCGWGKNWLE 947 >gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] Length = 864 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 351/977 (35%), Positives = 528/977 (54%), Gaps = 127/977 (12%) Query: 7 LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 + L+DG+S I+RAF+A PL++ K G+ NA+ GF NML ++L+ R + IA V F Sbjct: 4 IMLIDGNSLIHRAFHALPPLMTSK--GVHTNAVYGFMNMLMRILKEQRPDYIA----VAF 57 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D + TFR++ + +YKANR + PE L+ Q +++ +A I IEI G+EADDI+ + + Sbjct: 58 DKKSPTFRHQEFIEYKANRVRTPEELVGQFDVLKQILKAMNIRYIEIDGYEADDILGSLS 117 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 AE+ G I++ DKD +QLVSP + T K E D + + +++GIPP+ + Sbjct: 118 KKAEEAGIFTLIVTGDKDTLQLVSPMVHVMLTRKGISEMEIYDPDKMAERFGIPPQAIPD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GDS DNIPGIPG+G KTA LLQEYG+LENIL NA ++K K RENI Sbjct: 178 MKGLMGDSSDNIPGIPGVGEKTALKLLQEYGSLENILENAEKLKGK-LRENI-------- 228 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LK E ++ R+AT + Sbjct: 229 ----------------------------------LKYGEQARVSKRLATI-------VRD 247 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 V LD++ E IA+ TE D +K F L T IN PQ+ E +KLS Sbjct: 248 VELDVDLEE---IAL-TEPDYAELLKI--FRELEFYTL-INKLPRPQEK-EEHPEKLS-- 297 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 +++ + ++++ G + ++ TD + + I I S Sbjct: 298 -------CTVIDYSGFGRMMERVRAAGVLAVELKTDGRNPMDAHLIGIGFS--------P 342 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 + E ++ V + E+ S LK + KI H+ KY + VL + G+ Sbjct: 343 SRGEGFYVPAEVLEK---------SPEVKSDLKAVLADPGITKIIHDGKYARTVLAKIGM 393 Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK-SRKSS--IPIDKISDSQV 538 D ML +Y+LD + +D+ S+ L K R+ + IP+ +I ++ Sbjct: 394 DFVYNFDTMLAAYLLDPSKPRYDLESVVFDNLGVELKGTEDPGRRVAYLIPLKEIMSEKL 453 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 + A+E ++ ++ P+ V+S ME+TGI++D + L+ + Sbjct: 454 KSCAME----------------------ELFFGVEMPLSFVLSDMEMTGIKVDPEKLESL 491 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S E + L L IY L+G +FN++SPKQLG++LF KL P K K+G + T A+ LE Sbjct: 492 SREFGEKLEELTGEIYRLAGVEFNINSPKQLGEVLFEKLNLPVIKKKKSG-YSTDAEVLE 550 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ +P+++ ILE+R L K+KSTYAD L ++K T R+H+ ++ T TGR++S EP Sbjct: 551 KLKNA-HPVVEKILEYRFLMKMKSTYADGLLALVDKSTYRIHSNFNQTITATGRISSTEP 609 Query: 719 NLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 NLQNIP+KTD+G+KIR F++ P L+S DYSQIELR+LAH++ L + F DI Sbjct: 610 NLQNIPVKTDIGRKIRGVFVAESPEHVLLSGDYSQIELRVLAHLSGDEGLIEAFIKGEDI 669 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H A+E+FGV E+V+P +R AK +NF IIYGIS + LA L I +EA +YI+ Y + Sbjct: 670 HTRTASEVFGVPPEQVTPLLRDRAKAVNFGIIYGISDYGLAQNLGISTAEAREYIENYLN 729 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+P + +YI +T R +GYV TI RR + EINS ++R+ ER A+N PIQGSAA Sbjct: 730 RYPKVRDYIRETIRNARMSGYVTTILNRRRYIPEINSRNYNLRSFAERVAMNTPIQGSAA 789 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AM+ + ++ L KML+Q+HDEL+F+VP+ E+ I+ ME A I Sbjct: 790 DIIKVAMVKITNHFREYGLKAKMLIQVHDELIFDVPKSELEVVKNIVKDDMENA----IP 845 Query: 958 LRVPLKVNIKVSNNWQE 974 L+VPL V+ K W+E Sbjct: 846 LKVPLVVDFKEGYTWEE 862 >gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95] gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95] Length = 896 Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust. Identities = 351/989 (35%), Positives = 530/989 (53%), Gaps = 115/989 (11%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 +L+L+DGS YRAF+A DGLP NAI G ML KLL+ K+ S + Sbjct: 3 NLYLIDGSGIAYRAFFALGDWMSTSDGLPTNAIYGVARMLLKLLKEYVKKGEDS-IIFVM 61 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R+E+ YKA RP+ PE + Q+P + + GI + + +EADD+IAT Sbjct: 62 DKKTTTYRHELLESYKAQRPETPEKYIQQIPYIYEMVEKLGIKLVAMDNYEADDVIATIV 121 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 ++ V II++DKD+MQLV P + + VK D + V KK G+PPEK Sbjct: 122 SKKKRNYDNVYIITSDKDMMQLVKDNVYILRPEQGITEMVK---YDAQQVEKKMGVPPEK 178 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + L AL GDS DNIPG+ GIG KTA LLQ+Y N++++ + IK + + + E Sbjct: 179 IADLLALMGDSSDNIPGVKGIGIKTAQKLLQDYDNIDDLYQHLDEIKGSTKNK-LKNEKE 237 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILED----CNGPR--LISFLKALEFTKLINRVATTY 292 TA LS+KLV L D PI I ED G R L FLK L+F ++ Sbjct: 238 TAYLSKKLVQLMVDAPI-----EEIFEDKEIIYQGFRNNLRDFLKKLDFNSILKE----- 287 Query: 293 DCDAANIEPVVLDI--NTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350 LD+ TT + +A ET+ ++ D ++K Sbjct: 288 -----------LDMPDTTTNSTKVAAETKAEK------------KDYSTK---------- 314 Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 K +Y N +D ++ ++ LE SF + T ++D + + + IA Sbjct: 315 -----GKYYEY-----------NAQDYKELLKILEKYEIISFDLETSSLDPYQADIVGIA 358 Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 +S E F L ++ +D + +TKEI+ L N+ IG N+K Sbjct: 359 LSCK--------PFEGYF--LYLYKEKD---RWEITKEIVDLL----NNKKV--IGQNLK 399 Query: 471 YDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526 YD VL GI + D M+ +Y+L+ ++ +A+++L Y KE++ Sbjct: 400 YDITVLKVNGIELSKVHFDSMIAAYLLNPDSRRFNMDDLAKEYLDYKTIKYKEVMGKDIK 459 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 + + I +V E+A E++++ +L+ +L+PKL +L ++E+++ I+V+S+ME+ Sbjct: 460 LLTLGDIDKKRVVEYAGEDADIAYRLFEVLKPKLEEFELFELFEKIEMSTINVLSEMEMN 519 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G+ D L+++ E +K L SL + + G FN +SPKQ+G++LF L KTK Sbjct: 520 GVYFDLKELQKLEEEYNKKLSSLMYEMKKIVGYDFNPNSPKQVGELLFENLGLKGKRKTK 579 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 +G + T A LE + ++PII+ +LE+R+ K+ STY ++P +NK+T RVHT ++ Sbjct: 580 SGSYSTDADSLEALR-DEHPIIEKLLEYRKYQKLLSTYIIAIPKLVNKKTGRVHTSFNQT 638 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKIT 765 T TGRL+S EPNLQN+PI+ + G++IR + L+SADYSQIELR+LAH+ Sbjct: 639 GTATGRLSSSEPNLQNLPIREEDGERIRSTVKAQKDDYVLLSADYSQIELRVLAHLTNDE 698 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F N DIH + AA IFGV I+ V MRR K +NFS++YG SP+ LA L+IP Sbjct: 699 TLINAFNNGEDIHALTAAAIFGVKIDDVDYNMRRVGKVVNFSLVYGSSPYGLAENLKIPV 758 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 +A D++ RYF + + EY E + Q GYVETIFGR+ I + KS ++ R Sbjct: 759 EDAKDFMNRYFKTYQKVKEYQESSLKIATQKGYVETIFGRKRFLKNIKTGKSELK----R 814 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 IN PIQGSAADI + AMI+++K L K++LQ+HDE+V E+PE+ + +++ Sbjct: 815 IVINTPIQGSAADIMKLAMINLYKKLPKE---AKLILQVHDEVVIELPEKIVEETKKMVQ 871 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A + L +PLKV+I V NWQ+ Sbjct: 872 DCMENA----VKLNIPLKVDISVGKNWQK 896 >gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482] gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482] Length = 949 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 342/987 (34%), Positives = 537/987 (54%), Gaps = 53/987 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M+ +N LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MESDNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 SH V FD TFR+E + YKA R + PE + +P+++ A+ IP +E+ G+EA Sbjct: 55 PSHIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLV+ +Y T E + IE V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVTDNVFMYRPKHTGGFEVMGIEEVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + L GD+ DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 QSPAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E S+ L ++ DVPI + ++ L+ E + L + LEF LI+RV + Sbjct: 234 ETNKELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKEN 293 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 T ++ + + I+ F++ + N +K LE Sbjct: 294 SAGGVTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTG-----NEAGEAKKSNLE 348 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 L+ L N Y I K + +QKL T S T + ++ + ++ S Sbjct: 349 TLETL------NCDYQLIDTEKKRAEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSI 402 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 + + +F V V +++ K I++ + FENE+ LK+G NIKYD Sbjct: 403 TENQ---AFYV-------PVPDNREEALK------IVNEFRPVFENENSLKVGQNIKYDM 446 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528 +VL YG+ ++G D M+ YVL H + +A+ +L Y E++ + K+ Sbjct: 447 IVLENYGVQVKGALFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 505 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + + + +A E+++V L+L +L +L ++ ++ P++ V+ +E G+ Sbjct: 506 NMRDLDPKDIYRYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGV 565 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647 +D + LKQ S + + +E+ IY+L+GE FN++SPKQ+G++LF KL+ AK TKT Sbjct: 566 LLDTEALKQSSVHFTAQMQRIEQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKT 625 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQ+ T+ + LE + +P+++ ILE R L K+ TY D+LP IN RT RVHT ++ Sbjct: 626 GQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV 684 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIELRI+AH+++ + Sbjct: 685 TSTGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F ++ DIH AA+I+ ++++ V MRR AKT NF IIYGIS F LA ++ + R E Sbjct: 745 IDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKE 804 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A + I YF +P + Y+EK+ ++ GYVETIF R+ +INS + +R ER A Sbjct: 805 AKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNA 864 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQGSAADI + AM +++ + + KM+LQ+HDEL F VP E +I++ Sbjct: 865 INAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEE 924 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A + VPLK + NW E Sbjct: 925 MEHA----YRMHVPLKADCGWGKNWLE 947 >gi|253568986|ref|ZP_04846396.1| DNA polymerase I [Bacteroides sp. 1_1_6] gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6] Length = 949 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 342/987 (34%), Positives = 537/987 (54%), Gaps = 53/987 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M+ +N LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MESDNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 SH V FD TFR+E + YKA R + PE + +P+++ A+ IP +E+ G+EA Sbjct: 55 PSHIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLV+ +Y T E + IE V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVTNNVFMYRPKHTGGFEVMGIEEVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + L GD+ DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 QSPAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E S+ L ++ DVPI + ++ L+ E + L + LEF LI+RV + Sbjct: 234 ETNKELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRQIFEELEFRTLIDRVLKKEN 293 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 T ++ + + I+ F++ + N +K LE Sbjct: 294 SAGGVTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTG-----NEAGEAKKSNLE 348 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 L+ L N Y I K + +QKL T S T + ++ + ++ S Sbjct: 349 TLETL------NCDYQLIDTEKKRAEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSI 402 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 + + +F V V +++ K I++ + FENE+ LK+G NIKYD Sbjct: 403 TENQ---AFYV-------PVPDNREEALK------IVNEFRPVFENENSLKVGQNIKYDM 446 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528 +VL YG+ ++G D M+ YVL H + +A+ +L Y E++ + K+ Sbjct: 447 IVLENYGVQVKGALFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 505 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + + + +A E+++V L+L +L +L ++ ++ P++ V+ +E G+ Sbjct: 506 NMRDLDPKDIYRYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGV 565 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647 +D + LKQ S + + +E+ IY+L+GE FN++SPKQ+G++LF KL+ AK TKT Sbjct: 566 LLDTEALKQSSVHFTAQMQRIEQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKT 625 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQ+ T+ + LE + +P+++ ILE R L K+ TY D+LP IN RT RVHT ++ Sbjct: 626 GQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV 684 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIELRI+AH+++ + Sbjct: 685 TSTGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F ++ DIH AA+I+ ++++ V MRR AKT NF IIYGIS F LA ++ + R E Sbjct: 745 IDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKE 804 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A + I YF +P + Y+EK+ ++ GYVETIF R+ +INS + +R ER A Sbjct: 805 AKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNA 864 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQGSAADI + AM +++ + + KM+LQ+HDEL F VP E +I++ Sbjct: 865 INAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEE 924 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A + VPLK + NW E Sbjct: 925 MEHA----YRMHVPLKADCGWGKNWLE 947 >gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14] gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14] Length = 949 Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust. Identities = 342/987 (34%), Positives = 537/987 (54%), Gaps = 53/987 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M+ +N LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MESDNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 SH V FD TFR+E + YKA R + PE + +P+++ A+ IP +E+ G+EA Sbjct: 55 PSHIGVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLV+ +Y T E + IE V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVTNNVFMYRPKHTGGFEVMGIEEVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + L GD+ DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 QSPAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E S+ L ++ DVPI + ++ L+ E + L + LEF LI+RV + Sbjct: 234 ETNKELITFSKFLATIKIDVPIQLEMDKLVREQADEDSLRRIFEELEFRTLIDRVLKKEN 293 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 T ++ + + I+ F++ + N +K LE Sbjct: 294 SAGGVTMATGSKTATAKSAPSPLPLFPEEGGAIQGDLFANFTG-----NEAGEAKKSNLE 348 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 L+ L N Y I K + +QKL T S T + ++ + ++ S Sbjct: 349 TLETL------NCDYQLIDTEKKRTEIIQKLLTSKILSLDTETTGTEPMDAELVGMSFSI 402 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 + + +F V V +++ K I++ + FENE+ LK+G NIKYD Sbjct: 403 TENQ---AFYV-------PVPDNREEALK------IVNEFRPVFENENSLKVGQNIKYDM 446 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528 +VL YG+ ++G D M+ YVL H + +A+ +L Y E++ + K+ Sbjct: 447 IVLENYGVQVKGALFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 505 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + + + +A E+++V L+L +L +L ++ ++ P++ V+ +E G+ Sbjct: 506 NMRDLDPKDIYRYACEDADVTLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGV 565 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647 +D + LKQ S + + +E+ IY+L+GE FN++SPKQ+G++LF KL+ AK TKT Sbjct: 566 LLDTEALKQSSVHFTAQMQRIEQEIYELAGETFNIASPKQVGEVLFDKLRIIEKAKKTKT 625 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQ+ T+ + LE + +P+++ ILE R L K+ TY D+LP IN RT RVHT ++ Sbjct: 626 GQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPQLINPRTGRVHTSFNQTV 684 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIELRI+AH+++ + Sbjct: 685 TSTGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 744 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F ++ DIH AA+I+ ++++ V MRR AKT NF IIYGIS F LA ++ + R E Sbjct: 745 IDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKE 804 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A + I YF +P + Y+EK+ ++ GYVETIF R+ +INS + +R ER A Sbjct: 805 AKELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNA 864 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQGSAADI + AM +++ + + KM+LQ+HDEL F VP E +I++ Sbjct: 865 INAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEE 924 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A + VPLK + NW E Sbjct: 925 MEHA----YRMHVPLKADCGWGKNWLE 947 >gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] Length = 949 Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust. Identities = 343/1015 (33%), Positives = 543/1015 (53%), Gaps = 120/1015 (11%) Query: 4 ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + LFL+D + I+R +YA P ++ G+ V+AI GF N L+ +++ R + H Sbjct: 9 QKRLFLLDAYALIFRGYYALIKNPRITSS--GMDVSAIMGFTNSLFDVIKRERPD----H 62 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV FD + R E Y DYKANR + PE + +P ++ +A IP IE +G EADD+ Sbjct: 63 LAVAFDKGGSSARVEAYADYKANRDETPEAIRIAVPHIQEILKAMHIPIIEREGVEADDL 122 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP----- 175 I T AEKE F V +++ DKD QLVS +Y + + + I+ WGIP Sbjct: 123 IGTLAKQAEKEDFKVFMVTPDKDYAQLVSENIFMYKPAR-----MGNGIEIWGIPEVQKR 177 Query: 176 -----PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 PE+++ + GD+ DNIPG+PG+G KTA + YG++E +L N ++K K + Sbjct: 178 FEVERPEQVIDYLGMMGDASDNIPGLPGVGDKTAKKFIAAYGSMEGLLENTDKLK-GKMK 236 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 E ++ AE LS++L I+ DC+ ++F A Sbjct: 237 EKVIANAELGLLSKQLAT--------------IMLDCD----------VQFD------AK 266 Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL 350 Y+ + E V + E + + +D +K FS ++Q ++++S + +K Sbjct: 267 DYELSEPDAEAVTKKFDELEFRRM-------KDQFVKI--FSGEAEQGTQVSSTPSAKKQ 317 Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS--KPIA 408 D D +++ K I DT + + P+A Sbjct: 318 AATAAGAGQFSLFGGDGGATAATVAD------------ASTRKTIKDTQHFYQTIDSPLA 365 Query: 409 --IAISTLDQKDDTSFKVETIFID------LSVHTSQDSTGKNTL---------TKEILS 451 + I L ++ F ET +D + V S ++ GK + ++ Sbjct: 366 RKLFIQNLLKQTSVCFDTETTGLDPLVAELVGVAFSWEA-GKGYYIPFPESKDEAQALIE 424 Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ 510 L+ FFE+ KIG N+KYD VL +Y + ++G D ML Y+++ H++ +A+ Sbjct: 425 ELRPFFEHTGIEKIGQNLKYDIKVLAKYDVKVKGKLFDTMLAHYLINPDMR-HNMDVLAE 483 Query: 511 KWLSYTRKEIL-------KSRKS--SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561 +L+YT I K++KS +P+D Q E+A+E++++ LQL +L Sbjct: 484 TYLNYTPVSITELIGKKGKNQKSMRDVPLD-----QQTEYAVEDADITLQLKQHFEKELD 538 Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 ++ ++ P++ V++ ME+ GI +D + L+ +S +++ ++ L IY+ +GE+F Sbjct: 539 EAGTRKLFNDIEIPLLRVLAAMEVEGINLDVNFLESLSGDLNADIERLTSEIYEEAGEEF 598 Query: 622 NLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 +SSPKQLG+ILF K+K KTKTGQ+ +TA+D+ D+ II+ +L++R LSK+ Sbjct: 599 KISSPKQLGEILFDKMKLVDKPKKTKTGQY-STAEDVLSYLAKDHDIIQKVLDYRGLSKL 657 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739 KSTY D+LP + + RVHT Y TGRL+S PNLQNIPI+T+ G+++R+AF+ Sbjct: 658 KSTYVDALPEQV-AQDGRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGRQVRKAFVPR 716 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 L++ADYSQIELRI+A +++ + Q F + DIH AA++F V +E+V+ + R Sbjct: 717 DENHTLLAADYSQIELRIIAALSEEENMIQAFTDGEDIHASTAAKVFNVPLEEVTREQRS 776 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 +AKT+NF IIYG+S F L+ Q + R EA + I Y+ +P + Y+ + +F R+NGYV Sbjct: 777 NAKTVNFGIIYGVSAFGLSNQTDLSRGEAKELIDNYYKSYPKLRNYMSELVDFARENGYV 836 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 +T+ RR + + INS +R ER A+NAPIQGSAADI + AMI++ + LE+ TK Sbjct: 837 KTVLDRRRYLNGINSSNGVVRGAAERNAVNAPIQGSAADIIKIAMINIFEKLENSDYKTK 896 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 MLLQ+HDELVF+VP E+ +I ME A + VPL V + V NW E Sbjct: 897 MLLQVHDELVFDVPNIELDDIKNLIKTEMESA----FKMAVPLDVEVGVGQNWLE 947 >gi|332967876|gb|EGK06971.1| DNA-directed DNA polymerase I [Desmospora sp. 8437] Length = 881 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 337/981 (34%), Positives = 527/981 (53%), Gaps = 114/981 (11%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG+S +RAF+A PLL + G NA+ GF ML K+L+ E SH V Sbjct: 2 DKLVLIDGNSIAFRAFFALPLLKNRQ-GTYTNAVYGFTMMLMKVLE----EEKPSHVLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD +TFR+ Y +YK R K P L Q+PL++ AFGI E+ +EADDII T Sbjct: 57 FDAGKLTFRHRDYKEYKGKRDKTPGELSEQIPLIKKLLDAFGIRHFELDQYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMV 180 AEK AVTI++ DKDL+QLVS L T K ++ D+ + +K+G+ PE+++ Sbjct: 117 ARQAEKAEIAVTIVTGDKDLLQLVSDRVHLLMTRKGVTDADRYDLHKIEEKYGLKPEQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+ L GD DNIPGIPG+G KTA LL +YG++ EN+L++ Sbjct: 177 DLKGLMGDPSDNIPGIPGVGEKTALKLLHQYGSV----------------ENVLDH---- 216 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 ++HL G +L + L+++ T C+ Sbjct: 217 ------------------IDHL-----PGKKLKERVAENRRDALLSKELATIFCE----- 248 Query: 301 PVVLDINTTENKGIAIETEIDRDT-TIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 V LD + K +T DR T +K +F +L ++ ++ P + Sbjct: 249 -VPLDFGLADLKYEGYDT--DRVTPLLKELEFKTLLERFGGAEAKADPGE---------- 295 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 + + V ++ + W + L G A F + + + +H + +A++ D K Sbjct: 296 ----TEEIAVETVGPEETKNWDEWLAQDGLALF--LEMSGENYHRAEV-LAVALSDGK-- 346 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 + +F++ T+++ G +++ + K+ +++K ++ L Sbjct: 347 -----KQLFLEWG--TAREWPG-----------FRQWLRDPDRTKVCYDVKATEVALKHQ 388 Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIA-QKW---LSYTRKEILKSRKSSIPIDKIS 534 G+ GF DI+L SY++++ S H+++ I +KW L K K P K Sbjct: 389 GLETDGFAWDILLSSYLINASESGHELSEIVDRKWGGGLPDDDAVYGKGVKRRRPEGK-- 446 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 ++ EH + I +L LL +L L +Y L+ P+ V+++ME G+Q+D+D Sbjct: 447 --ELAEHLARKARAIHRLQPLLEEELKENGLDSLYLDLELPLARVLAKMEWQGVQVDRDR 504 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E+ L L E I++L+G +FN++SPKQLG+ILF KL P KTKTG + T+A Sbjct: 505 LQSLGEELKGRLEELTEKIFELAGTEFNINSPKQLGEILFDKLGLPVLKKTKTG-YSTSA 563 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE++ + I++ IL +RQ+ K+ STY + L I+ T ++HT ++ A TGRL+ Sbjct: 564 DVLEKL-APQHEIVEEILHYRQVGKLISTYVEGLLKEIDGETGKIHTRFNQAIAATGRLS 622 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKITPLYQVFEN 773 S +PNLQNIPI+ + G++IR+ F+ + L +SADYSQIELR+LAH++ L + F+ Sbjct: 623 STDPNLQNIPIRLEEGRRIRQVFVPSEEEWLMLSADYSQIELRVLAHLSGDENLIEAFQK 682 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 LD+H A ++FGV+ ++V+P MRRHAK +NF I+YGIS + L+ L IPR EAA++I+ Sbjct: 683 ELDVHTKTAMDVFGVSADEVTPWMRRHAKAVNFGIVYGISDYGLSQNLNIPRKEAAEFIQ 742 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 RYF +PG+ Y+E + +GYV T+ RR EINS + R+ ER A+N PIQ Sbjct: 743 RYFDSYPGVKRYMEDIVRQAKADGYVTTMLHRRRELPEINSRNFNRRSFAERTAMNTPIQ 802 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI ++AM+ + LE L ++LLQ+HDEL+FE P EE+ ++ ME A Sbjct: 803 GTAADIIKKAMVEMDSVLEKEGLRARLLLQVHDELIFETPAEEMEALDNLVRRVMESA-- 860 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 + L VPL+V+I W E Sbjct: 861 --VELAVPLQVDINTGKTWYE 879 >gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 928 Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust. Identities = 352/994 (35%), Positives = 551/994 (55%), Gaps = 96/994 (9%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYRA+Y+ PL++ K G +AI GF N L +L R+E+ +H V Sbjct: 3 LFLLDAYALIYRAYYSFIKMPLINSK--GFNTSAIFGFVNTLDNIL---RREN-PTHIGV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++++ YKA R + PE + +P+++ A+ IP +E+ G+EADD+I T Sbjct: 57 AFDPIEPTFRHQVFKQYKAQREETPETIRLSIPIIKDIVSAYHIPILEVSGYEADDVIGT 116 Query: 124 YTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG-IPP 176 +A+K + + +++ DKD QLV +Y E + ++ + +K+G I P Sbjct: 117 ---VAKKTSRDYEIFMMTPDKDYGQLVDEHIFIYKPRYRKDGFEILGVKEIKEKYGFISP 173 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA----SRIKQKKRREN 232 +M+ L GDS DNIPG PGIG TA L+ +G++EN+L N +K K R Sbjct: 174 IQMIDFLGLMGDSSDNIPGCPGIGEITAKKLIARFGSIENLLKNVHFLNGILKTKIERNK 233 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 ET S+ L ++TDVPI LI ED + P L + LEF +L++R Sbjct: 234 -----ETILFSKFLATIKTDVPINFNPNELIREDIDKPVLKKIFEKLEFHQLVSRFFG-- 286 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS---LSDQTSKINSEQTPQK 349 E + + +IK QFSS +D+ + N+E+T + Sbjct: 287 -----------------EKRSV---------LSIK-KQFSSSLLFTDKFVEKNNEKT--E 317 Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT---MDAFHSKP 406 L LS Y I DI + K++ SF I T +D ++ Sbjct: 318 TVLSNFDNLSTVL---HKYRVIDKQSDIGDLINKIKIQNFFSFNIKTTEAIEIDPLSAEL 374 Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466 + IA TL + E F+ G+ + K+ FE++ LK+G Sbjct: 375 VGIAF-TLQEG-------EAYFLPF--------FGRKRDIIPTVQLFKEIFESDTILKVG 418 Query: 467 HNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILK 522 N+KYD VL +YGI M DI++ Y+++ H++ +A+ +L+Y +E++ Sbjct: 419 QNLKYDINVLKKYGIRMNYPIFDILIAHYLINP-EYLHNLDFLAKTYLNYRIINTEELIG 477 Query: 523 SRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 S+K S + + ++ S + ++A EN++++L+L + P + +++ R++ P++ V+S Sbjct: 478 SKKESQLSVRQVPLSLLADYACENADIVLKLKNIFEPIIRKSNFSNLFYRIELPLVFVLS 537 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-P 640 ME G+++D LK S +++ L S+E+ I+ +SG+ FN++SPK +G+ILF LK Sbjct: 538 DMEEFGVKLDISALKDYSVVLNRYLESIEKIIFQISGKIFNVNSPKMVGEILFDHLKIIE 597 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 + KTK+GQ+ T+ LE + +PI+ IL++R+ K+ +TY D+LP ++ +++H Sbjct: 598 NSKKTKSGQYATSEGILENLK-KKHPIVGEILKYRKSKKLLTTYIDTLPTLVSFIDKKIH 656 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T Y+ A+T TGRL+S PNLQNIPI+ G++IRR FI +SADYSQIELRI+AH Sbjct: 657 TTYNQATTATGRLSSNSPNLQNIPIRDKEGKEIRRVFIPDDNCLFLSADYSQIELRIMAH 716 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ + + F N DIH +A+ IFGV + +++ MRR AK NF IIYGIS F LA Q Sbjct: 717 LSEDKNMLEAFRNGQDIHSAIASIIFGVPLAEITCDMRRKAKITNFGIIYGISVFGLAEQ 776 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ R A + I +YF FP I YI+++ R++GYVETIF R+ +INS S +R Sbjct: 777 LQVSRFIAKELINKYFMIFPDIKNYIDRSIAIARKDGYVETIFRRKRFLPDINSRNSVVR 836 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER +INAPIQGSAADI + AM +H+ L D+ L +KM++Q+HDEL F V +E+ Sbjct: 837 KYAERNSINAPIQGSAADIIKVAMNRIHRRLIDNDLQSKMIIQVHDELNFNVFIDELDKV 896 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QI+V+ ME A +L+VPL VN + NW E Sbjct: 897 KQIVVYEMEHAT----HLKVPLVVNCGIGKNWLE 926 >gi|189485016|ref|YP_001955957.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170286975|dbj|BAG13496.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 908 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 330/979 (33%), Positives = 538/979 (54%), Gaps = 89/979 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 F++DG+++I+RA++A P LS ++ VNA+ GF +L K+ +NS K + AV FD Sbjct: 4 FFIIDGNAYIHRAYHALPPLSTSNN-RQVNAVYGFVKLLLKI-KNSFK---PDYMAVCFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 YP+ FR+EI+ DYKANR + + L+ Q+P+ R A +A + IEI+G+EADD+IAT T Sbjct: 59 YPSKNFRHEIFKDYKANRKPLDKALISQMPIAREAVKALNVVGIEIKGYEADDLIATVTG 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 + G I++ DKD++QL T L ++ K+ D + V +K+G+ P+++ + AL Sbjct: 119 NNKGSGVQTVIVTGDKDILQLAEDETVLIWNYSKDIMYDTKKVEEKYGVAPKQLSDIFAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA-ETARLSR 244 GD+ DNIPGI GIG KTA L++++GNLEN+L NA +K + +L + E A LSR Sbjct: 179 MGDASDNIPGIKGIGEKTAVKLIEKFGNLENVLQNADSVKGNMGK--LLSHGKEQALLSR 236 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE-PVV 303 KL+ L VP+ L +D + + +SF + EF L+ + Y ++ PV+ Sbjct: 237 KLIELNRRVPLDYKLGEFESKDIDAGKAVSFFEKYEFKSLLAK----YSVKEHELQFPVI 292 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 L+ E R+ + F + +NS++ ++ Sbjct: 293 LN-------------ETHRNEEAGSGSFVTDKPVFEVVNSQERAAEV------------- 326 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 +K+E G + K + T+D+ ++ + I++ ++ +F Sbjct: 327 -----------------AEKIEQAGIFALKTVRSTLDSLKTRIVGISLCV----ENKAFY 365 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 DL T + + ++ F ++ KIGH++K ++ + G+ + Sbjct: 366 FPIGHNDL--------TARQVIFEDFKDIFAPLFFSDKIKKIGHDLKQERNIYSMSGVGL 417 Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK----EILKSRKSSIPIDKISDSQV 538 + DIML SY L+ +S H I +++++L +T S+KSS I Sbjct: 418 NNIYFDIMLASYCLNPAKS-HCITDMSKEYLDFTAGVGSYAWKGSKKSSFANSSIEAGAK 476 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++I S + ++ + ++ +KL ++ + +++++S+MEI+GI++D L+ Sbjct: 477 YANSI--SAAVFAIYKIFDFQIKEKKLSLLFFDTEMSLVEILSEMEISGIKVDLPFLRNF 534 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 + +I L +E NIY ++G +FN++S KQL ++F KL P KTKTG + T + L Sbjct: 535 NEKIVYELKIIENNIYKIAGIEFNINSQKQLSSVMFEKLNLPVIKKTKTG-YSTDEEVLV 593 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 +++ + P IL++R+L K+KSTY D L ++ R+HT ++ A T TGRL+S EP Sbjct: 594 ELSSHEFP--AEILKYRELQKLKSTYIDPLTDYCVYYGSRIHTIFNQAVTTTGRLSSTEP 651 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIP+K+ G++ R+AF+ K ISADYSQI+LR+LAHI++ T + F+ DIH Sbjct: 652 NLQNIPVKSAYGKEFRKAFVPERNKIFISADYSQIDLRVLAHISQDTKFIEAFKAGTDIH 711 Query: 779 RMVAAEIFGVNIEKVSP---QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 A EIF NI + P +R AK+INF IIYG+SPF L+ QL IP +A +YI Y Sbjct: 712 SATAREIF--NIPEGYPLTDSLRSAAKSINFGIIYGMSPFGLSKQLNIPFGKAKEYIDGY 769 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+ + ++E+ ++GYV TI GR + E+ S + +R ER A+N P+QGS Sbjct: 770 FERYDKVKFWMEQIVKQASEDGYVRTITGRIRYIPELRSTNAQVRKAGERMALNTPVQGS 829 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 +ADI + AMISV+ ++ + MLLQ+HD+L+FEVP+ E II + ME Sbjct: 830 SADIIKIAMISVYNEIKLKGYKSLMLLQVHDDLLFEVPDGESENMISIIKNKMENP---- 885 Query: 956 INLRVPLKVNIKVSNNWQE 974 ++L +P+ V+IK NW E Sbjct: 886 LHLSIPIVVDIKAGRNWGE 904 >gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645] gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645] Length = 880 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 326/953 (34%), Positives = 505/953 (52%), Gaps = 93/953 (9%) Query: 32 GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEML 91 G PV+A+ GF L LL +E + FD P TFR+E+Y DYK R ++P L Sbjct: 6 GQPVSAVYGFARDLANLL----REKKPDYLICAFDPPGGTFRHELYVDYKVTREEMPVDL 61 Query: 92 LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT 151 Q+ L+R +A + +E+ +EADD++AT I E G T++++DKD QL+S Sbjct: 62 RAQIGLIRRMLEAMNVAILELVNYEADDVLATVATIVEANGGDCTVVTSDKDCRQLISDR 121 Query: 152 TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEY 211 +++ K D + ++ WG+ P+++V Q+L GDS+DN+PG+ IG K A LLQ+Y Sbjct: 122 VRMFNVRKNAFYDADALMTDWGVRPDQVVDFQSLVGDSVDNVPGVALIGPKIAKELLQKY 181 Query: 212 GNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR 271 L+ +L NA I KRREN++ A LSR+LV Sbjct: 182 ETLDAVLDNAGEISGAKRRENLINGRAMAELSRELV------------------------ 217 Query: 272 LISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQF 331 +L+ V D DA + P IN + + + E F Sbjct: 218 -----------RLVRDVPIEIDWDACRVHP----INQEQVQELCREF-----------GF 251 Query: 332 SSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSAS 391 +L+ + + E + P +Y I + + V KL + S Sbjct: 252 RTLAREMAAFQVEAPA-----------ADKPEWIANYQTIDTIEKLDALVAKLADVKRLS 300 Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILS 451 F T + + + + I+ S DQ + + + D+ + S +L Sbjct: 301 FDTETTSTNPRWADLVGISFS-WDQGEGVYIPIRSPEGDVKLDESL-----------VLE 348 Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510 L+ EN K+G N+KYD +VL G+++RG D M+ Y+L++G SH + ++ Sbjct: 349 KLRPILENSAIEKVGQNLKYDLVVLRGVGVNVRGASFDTMVAHYLLEAGARSHGLDELSL 408 Query: 511 KWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++L + E++ + K+ I +D++ +V +A E++++ L+L +L ++ E L Sbjct: 409 RYLQHETVKISELIGTGKNQIRMDQVPVDKVGYYAAEDADIPLRLDPILSERIEAEGLGD 468 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + ++ P+IDV+ +ME GI++D + L ++S + + + LE IY L+G FN++SPK Sbjct: 469 LLTDVELPLIDVLVEMEFNGIRVDVERLNELSRQYGERMEVLEREIYQLAGRDFNINSPK 528 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF +L P KTKTG T A+ LEQ+ + + I+++RQ +K+K TY D+ Sbjct: 529 QLGTVLFDELNLPVIKKTKTGP-STDAEVLEQL-AKQHDMPAKIVQFRQYAKLKGTYVDA 586 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 LP I +T RVHT ++ TGRL+S +PNLQNIPI+T ++IR AFI P KL+ Sbjct: 587 LPVLICSKTDRVHTSFNQVVAATGRLSSNDPNLQNIPIRTQESREIRSAFIPGTPDWKLL 646 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 ADYSQIELR+LAH + L + ++ + DIH VA+E++GV +++V+ RR AK INF Sbjct: 647 CADYSQIELRVLAHFSGDPALMESYQKNEDIHARVASEVYGVPLDQVTSTHRRSAKAINF 706 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 ++YG SPF LA L I + EA +I YF R+PG+ +E+ +++GYV TI GRR Sbjct: 707 GVVYGQSPFGLAKSLDIDKDEAYGFIDAYFKRYPGVDVLMEQILVDCQRDGYVRTILGRR 766 Query: 867 IHYDEINSPKSSIR-----NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 D + + R + ER AIN IQGSAADI + AM+ VH+ LE K+L Sbjct: 767 RAIDGVRTADKRDRLKRQLTMPERTAINTVIQGSAADIIKLAMLRVHRRLEKEGSPAKLL 826 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LQIHDELVFE P E + +Q++ ME A NL +PL V+IK +NW + Sbjct: 827 LQIHDELVFETPPEYLEQLAQLVREEMESAR----NLAIPLVVDIKSGDNWAQ 875 >gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] Length = 944 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 356/980 (36%), Positives = 529/980 (53%), Gaps = 83/980 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG + +YRAF+A + SR DG P A+ GF + L K+ + + + + A Sbjct: 30 LILIDGMAMLYRAFFALQRAGMTSR--DGKPTGAVYGFTSALLKIFETYKPD----YLAA 83 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+ +YP YKANR PE L+ QL V AF IP I+I GFEADD+I T Sbjct: 84 AFDSREKTFRHHLYPLYKANRSAPPEDLISQLDAVFELLAAFDIPLIKIPGFEADDLIGT 143 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 I + E AV I++ DKDL QLV + K E + + +++G+PPE+ Sbjct: 144 AARIFQPE-CAVFIVTPDKDLAQLVQDGVSILRPGKNQNELELLGRSEIAEQFGVPPERF 202 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L LTGD+ DNIPG GIG KTAA LL +Y +L+NI ++ + K R + E+ Sbjct: 203 TDLLTLTGDTSDNIPGAKGIGPKTAATLLGKYDSLQNIYLHLGDLSPKNRL-TLEEFQPQ 261 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 L ++LV +RTD+ I + L+ L + L+ L LE +I R+ Sbjct: 262 LDLIKQLVTIRTDLQIDLTLKELACGSPDLTLLLPLLNKLELKTVIGRL----------- 310 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 PVV K + +SL + S + +P L + Sbjct: 311 -PVVFP---------------------KLMEHASL--EASMHDGPDSP----LAAAEPEL 342 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 + P Y I + ++ + L+ + T +++ F ++ I+IST +K Sbjct: 343 RSPRTGADYGVITTEEGLKALINSLQDAPRIAVDTETTSLNTFEAELAGISISTEARK-- 400 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 FI L+ + + L L+ EN K G N+KYD LVL +Y Sbjct: 401 ------ARFIALANSSLNPQSA--------LELLRPLLENPELPKTGQNLKYDILVLKKY 446 Query: 480 GISMR--GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534 GI + GF D ML SYVLD H++ +A + L Y T +E+ + K+ + I + Sbjct: 447 GIDLTPVGF-DTMLASYVLDP-EEKHNLDDLAARHLGYKTTTFEELTGTGKAKLHIFDVE 504 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQD 593 Q+ ++A +++++ LQL + R KL EK LL + E ++ P++ V++ ME GI ID Sbjct: 505 PEQLSDYACQDADLALQLEEIFRKKLEGEKELLWLCEHIEFPLVSVLAAMEHAGICIDTP 564 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L++ S + K L L E IY SG FN+ SPKQL +ILF L P+ TKTG + T Sbjct: 565 HLEKTSEAVGKELELLTEKIYAASGAPFNIDSPKQLSNILFNVLGLPTKKSTKTG-FSTN 623 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + LE++ +P++ ++LE+R L K+K+TY D+LP +N T R+HT ++ T TGRL Sbjct: 624 VEVLEEL-AELHPVVASLLEYRTLQKLKTTYIDALPKIVNPLTGRLHTSFNQFITATGRL 682 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 +S PNLQNIPI++ LG++IRRAFI S P K L+SADYSQIELRI A I+ L + F Sbjct: 683 SSSNPNLQNIPIRSPLGKEIRRAFIPSSPDKWLLSADYSQIELRIAAEISGDPQLIEAFR 742 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 N DIH A IFG + +++P MRR AK +NF ++YGI PF L+ +L IPRSEA I Sbjct: 743 NREDIHTATARVIFGSD--EITPDMRRKAKEVNFGVLYGIMPFGLSKRLNIPRSEAIAII 800 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 Y ++PG+ +++ +++GYV T+ GRR + ++NS S+I+ ERAA+N PI Sbjct: 801 DTYKAKYPGLFLALQEIIETGKKDGYVSTLLGRRRYIADLNSRNSNIQKAAERAAMNTPI 860 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI + AM + L + + + MLLQ+HDEL+FE +EE + +I +M A Sbjct: 861 QGTAADIIKCAMNLCSERLRKNSMRSVMLLQVHDELLFETTDEEKEPLADLIEEAMIDAA 920 Query: 953 LPKINLRVPLKVNIKVSNNW 972 + VP++V+ + NW Sbjct: 921 IICGLKNVPVEVDTGIGKNW 940 >gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 942 Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust. Identities = 328/957 (34%), Positives = 522/957 (54%), Gaps = 50/957 (5%) Query: 26 LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRP 85 L+ GLP AI GF ML+KLLQ+ +H A FD RN++Y +YKA+R Sbjct: 26 LTNSKTGLPSGAIFGFWRMLFKLLQDEH----VTHIAFTFDPGTRLERNDLYEEYKAHRK 81 Query: 86 KIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLM 145 +PE L PQ+ + QA P +I G EADDII + K+ + I+S+DKDL Sbjct: 82 PMPEDLKPQIQKIYEMLQALEFPMYKINGIEADDIIGSLCKKFGKDFEEIVILSSDKDLY 141 Query: 146 QLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201 Q++ + + EKID + V GI E++ AL GD+ DNIPG+ GIG Sbjct: 142 QVLDKNIHMLRGKRGVSEFEKIDPKWVKTNIGITKEQVTDYMALLGDASDNIPGVKGIGE 201 Query: 202 KTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261 K AA L+QE+G+LE I ++K K + ++ E A LSRKL + T++ + I Sbjct: 202 KGAAKLIQEFGDLETIYKKIDKVKNKSLIDKLIADKENAFLSRKLATIVTNLKLDIKKSD 261 Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID 321 L L + P+ + + K + L +A A I P+V D + E + Sbjct: 262 LKLPNYYDPKKVQYFKDEGYNVLHRDLAKQ-----AGI-PIVSDGDAKEES--ETSKKTT 313 Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381 + ++ S+ + K ++ + + SY +I + ++++ V Sbjct: 314 KGKKESNTEASADGSKKGKTDAATSV---------------VAKKSYKRIQSIDELKKIV 358 Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441 KL + S T + D ++ + I+ S ++ ++ +I S H+ + Sbjct: 359 SKLNSKKPISIDTETTSQDPMMAELLGISFS---EEPGVAY-----YIAFS-HSESIYSH 409 Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGR 500 +E L LK E+ ++ KIG NIKYD LVL YGI ++G + D ML SY+L+ G Sbjct: 410 LLPSAEESLKILKPMLEDSNWKKIGQNIKYDLLVLKNYGIELKGIYFDTMLASYLLNPGE 469 Query: 501 SSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 H++ +A +L+Y T +E++ + K + I +V E+A E++++ LQL +L Sbjct: 470 RRHNMDDMAVDYLNYKTITYEELVGTGKKKQNLYDIDPDKVSEYACEDADITLQLHNVLS 529 Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617 PK+ ++ ++ P++ ++ ME GI +D+ + +S + E+NI+ + Sbjct: 530 PKMDENIHKKLFYEMEMPVLLTLADMEFEGIAVDKSYFESLSGTFDTKIKEHEKNIHFYA 589 Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677 G +FN++S K+L +LF L+ P+ KT+TG + T LE + G +PII ++L R+ Sbjct: 590 GRQFNVNSTKELQTVLFEDLRLPAEKKTQTG-YSTDHSVLESLQ-GTHPIIDDLLSIRKF 647 Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 SK+KSTY D+LP +N +T+R+HT Y+ TGRL+S PNLQNIPIK + G+ +R+ F Sbjct: 648 SKLKSTYTDTLPLLVNPKTKRIHTSYNQTIAATGRLSSTNPNLQNIPIKDEEGRLLRKGF 707 Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797 I+ +++S DYSQIELRI+AH + + + + DIH+ AA IFGV ++V+P M Sbjct: 708 IAKKGYEILSLDYSQIELRIMAHFSNDPNMIDAYNSGADIHKRTAAGIFGVPEDQVTPDM 767 Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857 R AK +NFS+IYG++ F L+ LRI R EA ++I++YF + G+ Y+E+ F +QNG Sbjct: 768 RNKAKVVNFSVIYGVTSFGLSNNLRISRKEAKEFIEKYFAAYKGVATYMEEIVEFCKQNG 827 Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917 YVET+ GRR + +I+S + +R AIN+PIQG++AD+ + AMI +H+ ++ Sbjct: 828 YVETLLGRRRYLPDIHSSHKMVSEGAKRVAINSPIQGTSADMIKIAMIQIHEKIKKESFR 887 Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +K+LLQ+HDELVFEV +E Q+ ME A + L+VP+ V K NW E Sbjct: 888 SKLLLQVHDELVFEVDPKEKKEFFQMAKEEMESA----MKLKVPIVVQGKFGGNWDE 940 >gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555] gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016] gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555] gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 880 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 343/985 (34%), Positives = 525/985 (53%), Gaps = 133/985 (13%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DG S + RAFYA P L+ +G NA+ GF NML K+ +KE SH FD Sbjct: 6 LLILDGHSLMNRAFYALPDLTN-SEGTHTNAVYGFINMLLKM----KKEIEPSHIVCTFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y +YKA R ++P L Q P+V+ + I EI GFEADD++ T + Sbjct: 61 RSAPTFRHDKYSEYKAGRKRMPPELSEQFPIVKEILELLSINIFEIDGFEADDLMGTLSV 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCL 182 AEK+G V I++ D+D +QL + + + T K +E D +I +G+ P + + + Sbjct: 121 FAEKKGMEVYIVTGDRDALQLATDSVKIVITKKGITQKEIYDRNKIIDDYGVTPTEFIDV 180 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD+ DNIPG+PGIG KTA L++EY ++EN+L N IK KK +EN+ Y E A Sbjct: 181 KGLMGDASDNIPGVPGIGEKTALKLIKEYKSIENVLCNIDNIKGKKVQENLKNYMEQAVF 240 Query: 243 SRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 S+KL + TDVPI + L+ + E N L + L+F L++++ P Sbjct: 241 SKKLATIVTDVPIELDLQSIESKEQYNAEGLRKLFEKLQFKSLMDKI------------P 288 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 V + + E + +E E+ DT K F + +E KL + Sbjct: 289 KVEEQDKIEVEDFQVECEV-IDTLNKVHNF------IDSLEAEDMKNKLLYINFK----- 336 Query: 362 PINNDSYTKIVNTKDIQQWVQKLE-TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 ++ +SY K ++ K+ IG +F+I H K I D+ Sbjct: 337 VVDENSYAK--------NYIDKIFINIGEKNFEI--------HIKEIY---------DEN 371 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 K +V T+ K FEN K+ +++K +LHR G Sbjct: 372 KIK--------AVETA-----------------KMLFENSSLSKVSYDVKVPCSILHRMG 406 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS----------YTRKEILKSRKSSIP 529 I + G E DI + +Y++D R+++++ I +++L+ + ++ +L SR S Sbjct: 407 IKLLGIEFDIKIAAYLMDPARTNYELPDIIKEYLNIEISEEREDCFIKETLLFSRLYSTL 466 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 KISDS + +KLL+ +++P+ V++ ME G + Sbjct: 467 KKKISDSSM------------------------DKLLY---EVEQPLTFVLASMECEGFK 499 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 +D+D L ++ + + +++ IY LS E+FN++SPKQLG ILF KL P KTKTG Sbjct: 500 VDKDKLTEMEEKFKIEIDKVQKEIYFLSEEEFNINSPKQLGKILFEKLDLPVIKKTKTG- 558 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T A LE+++ G +P+I+ I+ +RQL+K+ STY + L I + ++H+ ++ T Sbjct: 559 YSTNADVLERLH-GKHPVIEKIIYYRQLTKLYSTYIEGLKGVI-EEDGKIHSNFNQTVTT 616 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPL 767 TGRL+S EPNLQNIPIK ++G++IR+ FI P + ++SADYSQIELR+LAHI+ L Sbjct: 617 TGRLSSTEPNLQNIPIKYEMGKEIRKIFI-PDNRDCVILSADYSQIELRVLAHISGDENL 675 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F N DIH A+E+F V + +V+ R +AK +NF I+YGI F LA L IPR E Sbjct: 676 INAFINHNDIHTKTASEVFNVPLGEVTSTQRSNAKAVNFGIVYGIGDFSLARNLNIPRKE 735 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A YI YF ++P + Y+ +N YV TI RR EI S I+ + ER A Sbjct: 736 AKSYIDAYFEKYPKVKLYMNDIVKQAEKNFYVTTILNRRRFIPEIKSSNKIIKALGERFA 795 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +N PIQGSAADI + AM++V L+D+ +K++LQ+HDELV V ++E+ I+ Sbjct: 796 MNTPIQGSAADIIKIAMVNVFNRLKDNNFKSKIILQVHDELVLNVYKDELKDVKDIVKEE 855 Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972 ME L+VPL+V+I + +NW Sbjct: 856 MENV----FKLKVPLEVDISIGDNW 876 >gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580] gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580] Length = 951 Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust. Identities = 335/985 (34%), Positives = 513/985 (52%), Gaps = 55/985 (5%) Query: 4 ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 ++ L+L+D IYR+++A PL ++ G V+A+ GF L +L+ R + Sbjct: 6 QDTLYLLDSYGLIYRSYFAFISHPLTNKA--GENVSALYGFFRSLAMILKTYRPR----Y 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 F FD TFR+E Y +YKA R K PE L Q+P + A GI + GFEADDI Sbjct: 60 FLAAFDSRTPTFRHEWYSEYKATRDKTPEDLHAQIPHIEKILTALGIACLRKDGFEADDI 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIPPE 177 IAT + +EG IIS DKDL QLV + K E + +E V WG+ P Sbjct: 120 IATLARRSAQEGRRCVIISGDKDLAQLVGDFVSVLKPDKSEALAQCGVEEVKAHWGVAPA 179 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +M+ +L GDS DNIPG+ GIG KTA LLQ+YG L+ + + I +++ + Sbjct: 180 QMLDYLSLIGDSADNIPGVKGIGPKTAVKLLQDYGTLDAVYEHIDSIAGAVQKK-LAAGK 238 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 ++A S+KL+ L +VPI L+ + + LK E + R+ Y A Sbjct: 239 DSAYFSKKLITLADNVPIEGTLDDYRCTALHYAETAALLKEYE----LPRLGELYAKAAG 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 E + E A + +++ T KT ++ D +K + Q L + Sbjct: 295 ESETAG---SAAEQNTAAGKADVNTATAGKTGATTAADDIGTKPANSAAAQPAELRK--- 348 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 N+ Y + + K+++ + + E G A+F T ++ + + ++S Sbjct: 349 ------NDGEYRTVTDAKELEAVIAEAEAQGFAAFDCETTGLNPLYDSLVGFSLS----- 397 Query: 418 DDTSFKVET-IFIDLSVHTSQDSTGKNTLTKEILSYLKKF----FENEHFLKIGHNIKYD 472 K T I++ L + G+ L+ KK + N+ + HN K+D Sbjct: 398 ----LKAGTGIYVPLKAPAPE--LGEQPFAVMPLAAAKKLLARLWNNKELTLVLHNGKFD 451 Query: 473 KLVLHRYGISMRG---FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529 VL G+ R D M+ +++L+ S + ++ + L + Sbjct: 452 YQVLRTAGVFTRAGCRLFDTMIAAWLLEPDNLSFGLENLTEAQLGLQGLDYKDVVPKGCT 511 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 +S Q +A E+++ LQL+ + +P L L ++E L+ P++ +++ ME GI Sbjct: 512 FAAVSLPQATAYAAEDADFTLQLYHVYKPALEQANLTTLFETLEMPLMPLLADMEAQGIF 571 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 + ++ L S E++ L E IY L G FN++SPKQL ++LFT+ K P+G KTKTG Sbjct: 572 LKKEELAAFSEELAGTLARDEAEIYKLVGHPFNIASPKQLQEVLFTERKLPTGKKTKTG- 630 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T LE++ D + IL++R +K+KS YAD+LP + R+HT + T Sbjct: 631 YSTDISVLEELAAIDE-LPAKILDYRASAKLKSGYADALP-LLADANGRIHTSFIQTGTA 688 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIPI+ + G+KIR+AF + KLISADY+QIEL ILAH ++ L + Sbjct: 689 TGRLSSRDPNLQNIPIRGEEGRKIRKAFYAADGCKLISADYAQIELVILAHFSQDENLVK 748 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F D+H AA IF V +E V P MRR AK INF ++YG+S FRLA QLRI R+EAA Sbjct: 749 AFRQGTDVHAATAALIFNVPVENVVPDMRRIAKVINFGVMYGMSAFRLANQLRISRTEAA 808 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 D+I RYF + G+ ++E K + G+VET+ GRR + INS + R ER AIN Sbjct: 809 DFITRYFTTYSGVAAFMETLKESAAEKGFVETLMGRRRYIRAINSRNQTQRAAAERIAIN 868 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 PIQGSAADI + AM+ V ++L+ L+ +LLQ+HDEL+ E P+ E+ + ++ ME Sbjct: 869 TPIQGSAADIVKTAMLHVDRALKRQHLSAHLLLQVHDELILEAPDSEVDSVKALLKQEME 928 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 + L VPL+V+I+ + W + Sbjct: 929 HV----VKLAVPLRVSIESGSCWGD 949 >gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] Length = 950 Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust. Identities = 340/979 (34%), Positives = 530/979 (54%), Gaps = 80/979 (8%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 LFL+DG + +YRAF+A K DG+P A GF L K+ + + + AV Sbjct: 36 ELFLLDGMALVYRAFFALQRADMKTRDGVPTGAAFGFLTTLLKIYETYAPD----YLAVA 91 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y YKANRP+ PE L+ QL + +AF IP ++ G+EADD+I T Sbjct: 92 FDSREKTFRHERYDAYKANRPQPPEDLITQLDFIFRLIEAFNIPILKQPGYEADDLIGTA 151 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKMV 180 E E + I+S DKD+ QL+ L K + + + ++ GI P++ + Sbjct: 152 AREFEPE-CRINIVSPDKDMTQLIHDGVTLLKPGKRQNELLRFGAAELKEELGIAPDQFI 210 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L LTGDS DNIPG GIG KTA+ LL YG+L+ I N ++ + R+ ++ E+ Sbjct: 211 DLLTLTGDSSDNIPGAKGIGPKTASKLLLSYGSLDEISKNLEKLPPRTRK-SLEEFLPER 269 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 L R LV ++TD+ + PL L + +L L+ LE + +++ + Sbjct: 270 ELIRDLVTIKTDIDLQTPLASLQCGQPDPEKLFPLLERLELRAIASKIPDLF-------- 321 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 P + T K IA D K+ E R +++ Sbjct: 322 PAI-----TPPKEIA-------------------PDNAPKVKREA-------HRAPTITE 350 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 P + YT I +++ + L + S + T +++ F ++ + I+IS Q Sbjct: 351 -PPEDAVYTLIDTEEELTTLTETLAGLSSFALDTETTSLNTFEAELVGISISVKPQ---- 405 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 E +FI S + ++ LS LK EN K G N+KYD LVL YG Sbjct: 406 ----EAVFIYCSPEGLK--------PEKALSILKPVLENPAIEKWGQNLKYDILVLKNYG 453 Query: 481 ISMR--GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD 535 I + GF D ML SYV++ +H++ +AQ+ L Y T E+ + K ++P+ ++ Sbjct: 454 IQLAPTGF-DTMLASYVINP-EETHNLDDLAQRHLQYRTTTYSELCGTGKKAVPLRQVPL 511 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER-LDKPMIDVVSQMEITGIQIDQDL 594 ++ +A +++++ L+L L +L + L R ++ P+++V+ ME GI +D Sbjct: 512 EALKNYACQDADIALRLQNTLEKQLKDNQELEWLCRNIEFPLVNVLVAMEYRGISLDTKH 571 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L++ + +++ L+E IY +G FN+ SPKQLG+ILFT+L P+ TKTG + T Sbjct: 572 LEKTATKVASLTADLKERIYATAGSTFNIDSPKQLGEILFTRLGLPAKKTTKTG-YSTNV 630 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 Q LE++ +PI ++ILE+R L K++STY ++LP +N T ++HT ++ T TGRL+ Sbjct: 631 QVLEELAM-IHPIAQDILEYRSLQKLRSTYIEALPKILNPATGKLHTSFNQHITATGRLS 689 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFEN 773 S PNLQNIPI+T+LG++IR+AFI+ + L+SADYSQIELRI A ++ L + F N Sbjct: 690 SSNPNLQNIPIRTELGKEIRKAFIASTNRNFLLSADYSQIELRIAAELSGDKKLIEAFRN 749 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIH A IF + E V+ MRR AK +NF ++YGI P+ L+ +L I + EA I Sbjct: 750 QEDIHAATAKAIF--DTEDVTSDMRRKAKEVNFGVLYGIQPYGLSMRLNISQKEAKAIID 807 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 Y ++PG+ E ++ +NG+V T+ GRR + +NS +IR ERAA+N P+Q Sbjct: 808 TYKSKYPGLFEALDALVRQAAENGFVTTLLGRRRYIAALNSRNGNIRKAAERAAMNTPVQ 867 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI + AM + ++++HK+ + MLLQ+HDELVFE EEE ++V SM++A L Sbjct: 868 GTAADIIKYAMCLIENTMQEHKMHSTMLLQVHDELVFETNEEEHEKLETMVVASMKEAAL 927 Query: 954 PKINLRVPLKVNIKVSNNW 972 +VP++V+ + NW Sbjct: 928 VCGLKQVPVEVDTGIGKNW 946 >gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313] Length = 894 Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust. Identities = 343/989 (34%), Positives = 521/989 (52%), Gaps = 123/989 (12%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L +DG+S + RAFY P L DG+ N I F N++ K ++ E I V FD Sbjct: 6 LMAIDGNSILNRAFYGLPELLTTSDGIYTNGIYVFLNIMHKFIEEENPEYIC----VAFD 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ Y YKANR +PE L Q+PL++ A I +E++GFEADDI+ + + Sbjct: 62 LKAPTFRHNKYEGYKANRKGMPEELRVQVPLLKEVLDAMNIKRLEMEGFEADDILGSVSL 121 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEEKIDIEHVIKKWGIPPEKMV 180 AEK+G V +++ D+D QL+ P+T L + E+ D +++ +GI PE+ V Sbjct: 122 CAEKKGLEVILVTGDRDAFQLIGPSTRLKLPRTRGGKTEVEEYDYNKIVEVYGIKPEQFV 181 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++AL GD+ DNIPG+PGIG KTA L++EY NLEN+ + IK+K RE + + E A Sbjct: 182 DVKALAGDTSDNIPGVPGIGEKTALALIKEYNNLENLYNSLDSIKKKGLREKLETFKEQA 241 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LSR+ L L + N P L CD ++ Sbjct: 242 FLSRE----------------LALIERNMPSL---------------------CDIEELK 264 Query: 301 PVVLDINTTENKGIAIETEIDRDTT---IKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 V EIDR+ T K +F S D K L +Q Sbjct: 265 RV----------------EIDREKTYEIFKRLEFRSFID------------KFGLNDVQI 296 Query: 358 LSQYPINNDSYTKIV-NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 + +N KI N +++ + + D +F K AIAIS ++ Sbjct: 297 QNTVELN----VKIAKNASELESLKNNILKSRKVCIYHLIDKTGSFSQKLAAIAISPVED 352 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 E ++D + + +D E K E+ + K GH++K + L Sbjct: 353 --------EAWYLDFTNNIDED---------EFFRQFKDVLEDGNIKKYGHDLKNFIVYL 395 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI--LKSRKSSIPI--- 530 + GI G D M+ +Y+++ + ++ I+ +AQ++L+ + K + L + S + Sbjct: 396 NNRGIDFNGLAFDTMIGAYIINPSKETYTISELAQEYLNLSVKAVEELAGKGKSFTLFKD 455 Query: 531 ---DKISDS-QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 D +S + V H I S V ++ LL+ +Y ++ P++ ++ ME Sbjct: 456 MQPDVLSKTVGVYPHVI--SKVSRKIDSLLKEN----NQERLYYDIELPLVRTLADMEYY 509 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G +++ D L + S E+ + + + + IY L+GE+FN++SPKQLG ILF KL P KTK Sbjct: 510 GFKVNVDALVEFSKELQEKIDVVTKEIYTLAGEEFNINSPKQLGVILFEKLGLPIIKKTK 569 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 TG + T A+ LE++ + I++ ILE+RQL K+KSTYA+ L IN T ++H+ ++ Sbjct: 570 TG-YSTDAEVLEEL-SDRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFNQT 627 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKIT 765 T TGR++S EPNLQNIPIK ++G+KIR+ FI S L+ ADYSQIELR+LAHI Sbjct: 628 VTATGRISSTEPNLQNIPIKLEMGRKIRKVFIPSDENYLLLDADYSQIELRVLAHITNDE 687 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 + F N+ DIH AA +FG+ E+V+P MR AK +NF I+YGI F LA L+I R Sbjct: 688 NMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNFGIVYGIGDFSLAKDLKISR 747 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA YI Y R+P + +Y+ ++ G+V T+F RR + E+ S +IR+ ER Sbjct: 748 KEARAYIDGYLDRYPNVKKYMHDIVEEGKEKGFVTTMFMRRRYLPELKSRNFNIRSFGER 807 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 A+N PIQGSAADI + AM+ VH L+ KL ++++LQ+HDEL+ E ++E +I++ Sbjct: 808 VAMNTPIQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKILL 867 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ A ++L+VPL V IK +NW E Sbjct: 868 EGMQNA----VSLKVPLVVEIKSGSNWYE 892 >gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489] gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489] Length = 929 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 338/990 (34%), Positives = 526/990 (53%), Gaps = 95/990 (9%) Query: 7 LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 ++++D IYRA++A PL + D ++A+ F L L+ + A Sbjct: 11 VYILDSYGLIYRAYFALLNHPLTNPGGDN--ISALVIFFKNLKALISKYN----PCYLAA 64 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E+Y +YKANR K PE L Q+P + +A IP + GFEADDIIAT Sbjct: 65 AFDSRVKTFRHELYAEYKANRAKTPEDLHAQVPWIEEILEALEIPVLRYDGFEADDIIAT 124 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-----YDTVKEEKIDIEHVIKKWGIPPEK 178 +E I+S DKDL+QLV+ +CL E I + V++KWGIPPEK Sbjct: 125 VAKKCAQENRPCRILSGDKDLLQLVT-DSCLEMQPDRANGGWEVIGAQEVLEKWGIPPEK 183 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ +L GD+ DN+PG+ G+G KTA LL +YG L+ I +AS IK E I + Sbjct: 184 ILDYLSLVGDASDNVPGVKGVGDKTAIKLLTQYGTLDEIYAHASEIK-GALGEKIRNDKD 242 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A S+KL+ LR DVP+ I E ++ N F E + A Sbjct: 243 NAYFSKKLITLRYDVPVEIDFESFCTKNIN------FKSGAEVLEKYGAYAIA------- 289 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 K A ET + + K+ ++ P++ +K+ Sbjct: 290 -------------KSFASETAAEIHSE-------------EKLTLQEEPEE------KKV 317 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQK-LETIGS-ASFKIITDTMDAFHSKPIAIAISTLDQ 416 N Y N +++ + Q LE+ +F TD+++ + + ++S Sbjct: 318 LSVKQNEGDYKPCTNLDELKSFAQSILESAEKIVAFDTETDSLNTHEANLVGFSLSVEKG 377 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTK-EILSYLKKFFENEHFLKIGHNIKYDKLV 475 K I + V S T++K + L+ L+K F + + HN K+D V Sbjct: 378 KG----------IYVPVILSGGMFAPETISKKDCLAVLEKLFAEKELTLVMHNGKFDLEV 427 Query: 476 LHRYGISMRG---FEDIMLMSYVLD---SGRSSHDIASIAQKWLSYTR---KEILKSRK- 525 L G+S + D M+ +++L+ SG+S + + +A+ L K+I++ + Sbjct: 428 LAANGMSAKTECKIFDTMIAAWLLNPAASGKSPYSLEFLAETKLGLKGIEFKDIVQKNQT 487 Query: 526 -SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 + +P++K ++ E+S+ LQL+ LL+ ++ L ++ ++ ++ ++ ME Sbjct: 488 FADVPLEK-----AFKYGAEDSDFTLQLYYLLKDEIKKSNLEKLFYEMEMKVLPILVSME 542 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 I GI +D+ L + E++ + E+ IY +G +FN++SPKQL +ILF K P G K Sbjct: 543 IQGIHLDKKKLNEYKDELAVLISEKEKEIYKEAGCEFNIASPKQLQEILFEKRNLPHGKK 602 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TKTG TA E + ++P+ K IL++R +K++STY ++LP + + R+HT + Sbjct: 603 TKTGYSTDTAVLEELVFSTNDPLPKMILDYRSYTKLQSTYVEALP-LLADKNGRIHTSFL 661 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 T TGRL+S +PNLQNIP++ + G++IR AF + P LISADYSQIEL +LAH++ Sbjct: 662 QTGTATGRLSSRDPNLQNIPVRDESGRRIRSAFTAVPGTVLISADYSQIELVVLAHLSGD 721 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L F N +D+H+ AA I+G++ E+V P+ RR AKT+NF ++YG+S FRLA +L I Sbjct: 722 KNLCSAFINGIDVHKSTAALIYGISPEQVKPEQRRFAKTVNFGVMYGMSAFRLANELNIS 781 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R+EA ++I +YF + + +++++TK R+NGYVETI GRR + EI S + E Sbjct: 782 RTEAKNFIDQYFSTYSDVKKFLDETKRMARENGYVETITGRRRYIPEIKSSSKIVLQGAE 841 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R AIN PIQGSAADI + AMI V +LE KMLLQ+HDEL+FE PE+ A II Sbjct: 842 RIAINTPIQGSAADIVKTAMIKVQAALEKSGTGAKMLLQVHDELIFECPEDNAGNAISII 901 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A + L++PL+V+++ NW E Sbjct: 902 QREMENA----VQLKIPLRVSVERGKNWGE 927 >gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12] gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12] Length = 859 Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust. Identities = 336/940 (35%), Positives = 506/940 (53%), Gaps = 93/940 (9%) Query: 41 FCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVR 99 NM+ KL+++ IA V+FD TFR+E YP+YKA+RP +P+ L Q PL++ Sbjct: 1 MANMIKKLIKDYHPAEIA----VVFDAKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQ 56 Query: 100 LATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK 159 L G+P + I G EADD+I T A ++G V I + DKD+ QLV+ L +T+ Sbjct: 57 LLA-IMGLPLLIIDGVEADDVIGTLARQATEQGIPVVISTGDKDMAQLVNEHVTLINTMS 115 Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219 +D+ V +K+G+ P +++ L GD+ DNIPG+ G KTA L EY L+N+L Sbjct: 116 NYTMDVAGVKEKFGVEPAQIIDYLTLVGDTSDNIPGVSKCGPKTAVKWLSEYQTLDNLLA 175 Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279 ++ I K I EY LR +P L Sbjct: 176 HSHEITGK-----IGEY------------LRASIP-----------------------QL 195 Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIET--EIDRDTTIKTSQFSSLSDQ 337 +K + + T D + L++ K +A E E+ R+ K + L +Q Sbjct: 196 PLSKKLVTIKTDID--------LPLNLGELHPKAVAKEQLIELVRELEFK-NWLKELLEQ 246 Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397 T S T L + +Y + + W+Q+LE T Sbjct: 247 TENHASLTTEMTL-------------SPSTYELVTTQAQLDDWLQQLENCQVFCLDTETT 293 Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457 ++D ++ + I+++ ++K + + I D SV +D E+ + +K Sbjct: 294 SLDIMAAEIVGISLAIEEKK---AAYIPFIHTDGSVQLLRD---------EVFAAIKPIL 341 Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY- 515 EN KIG NIKYD VL +GI ++G D ML SY+L+S HD+ +++ K+L + Sbjct: 342 ENPAIKKIGQNIKYDYSVLKNHGIHLQGLAYDTMLESYILNSNAGRHDMDTLSLKYLGHK 401 Query: 516 --TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573 T ++I + D+I + +A E++++ LQL L P ++ E L V+ ++ Sbjct: 402 TITFEDIAGKGAKQLRFDQIPVDKASVYAAEDADITLQLHHKLYP-MMAESLHSVFNDIE 460 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 P+I V+++ME+ G+ ID + L+Q + + + LEE L+G+ FNLSSPKQL +IL Sbjct: 461 MPLIPVLAEMELRGVLIDANTLEQHGKRLKERIKILEEEAIQLAGKPFNLSSPKQLQEIL 520 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 F + K P AKT TGQ +TA+ + Q D + ILE R L+K+ STY D+LP IN Sbjct: 521 FNEQKIPVIAKTPTGQ-PSTAESVLQELAFDYRLAAVILEHRGLTKLVSTYIDALPKKIN 579 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753 T RVHT Y+ A TGRL+S EPNLQNIPI+ + G+ IR AFI+PP + +++ADYSQI Sbjct: 580 AETGRVHTSYNQAVAATGRLSSSEPNLQNIPIRNEEGRLIRTAFIAPPEQVILAADYSQI 639 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELRI+AH+++ L F N DIH AAEIF + E+V+ + RR AK +NF +IYG+S Sbjct: 640 ELRIMAHLSQDENLLTAFANGWDIHTATAAEIFHIAREEVTSEQRRRAKAVNFGLIYGMS 699 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 F LA Q+ + R +A +YI YF R+P + EY+ +T+ + GYVET+ GRR++ EIN Sbjct: 700 AFGLAKQIGVERQDAQNYIDTYFQRYPKVLEYMNRTRQQAHEQGYVETLCGRRLYLPEIN 759 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEV 932 + + ER AINAP+QG+AADI ++AMI++ K +M++Q+HDELVFEV Sbjct: 760 TRNLMRQKAAERTAINAPMQGTAADIIKKAMINIAKWQNAQATPPARMIMQVHDELVFEV 819 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +EI ++ I ME+A + L VPL V+I NW Sbjct: 820 ASQEIEASTVKIRQLMEQA----MQLSVPLLVSIGTGPNW 855 >gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] Length = 936 Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust. Identities = 343/990 (34%), Positives = 523/990 (52%), Gaps = 102/990 (10%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 K+ LFL+DG + +YR+F+A L R DG+P A GF L K+ + + E Sbjct: 29 KKPSLFLLDGMALVYRSFFA---LQRAGMSTKDGIPTGAAYGFLMTLLKIFETGKPE--- 82 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 + AV FD TFR+E+Y YKANRP+ PE L+ QL L+ +AF IP ++ G+EAD Sbjct: 83 -YLAVAFDSKEKTFRHELYAPYKANRPEPPEDLIAQLELIFKLVEAFRIPILKQPGYEAD 141 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174 D+I + EK+ + I++ DKDL QLV+ + + + + + V K++G+ Sbjct: 142 DLIGSAVRQFEKQ-CEIVIVTPDKDLAQLVNEGVSILKPGRNRNELDTMGCDEVKKQFGV 200 Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 PPE + LTGDS DNIPG GIG KTA+ LL YG LEN+L + + + R+ ++ Sbjct: 201 PPECFIDFLTLTGDSSDNIPGAKGIGPKTASKLLTTYGTLENVLAHIEELAPRSRK-SLE 259 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 E+ +L + LV +RTD+ + L L + + +L L+ LE Sbjct: 260 EFETNRKLIQALVTIRTDIELDTTLPELASGEPDSVKLFGLLEKLEM------------- 306 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 +S++++ I TP + L+ Sbjct: 307 -------------------------------------NSVAEKIPHIFPGSTPPRTGLQE 329 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 + S P +Y I + + LE S S T +++ F ++ + I+I Sbjct: 330 QSEPSFSPPEGAAYHLIDTEAALTELTNTLEKQSSFSIDTETTSLNTFEAELVGISICWK 389 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 E FI T K K L+ EN K G N+KYD L Sbjct: 390 PG--------EAYFIHF--------TDKELSAKTFPGKLQDVLENPDIKKTGQNLKYDIL 433 Query: 475 VL--HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 VL H ++ GF D ML SYV++ H++ +A+K L++ T E+ + K +IP Sbjct: 434 VLKNHHVRLAPVGF-DTMLASYVINP-EEKHNLDDLAKKHLNHRTITYSELTGTGKKAIP 491 Query: 530 IDKISDSQVQEHAIENSNVILQLW----LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 I ++ ++ +A ++++V LQL +LL +E+L ++ P+++V++ ME Sbjct: 492 IREVPIDRLTVYACQDADVALQLEQKQKILLGENSELEQLCV---NIEFPLVEVLADMEY 548 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 GI +D L++ + +++ LL L E IYD +G FN+ SPKQLG++LF L P+ T Sbjct: 549 LGIALDTAQLERTAETVNRQLLELTERIYDTAGTIFNIDSPKQLGNVLFNVLGLPAKKTT 608 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTG + T Q LE ++ +P+ K++LE+R L K+K+TY D+LP +N +T RVHT ++ Sbjct: 609 KTG-FSTNVQVLEDLSL-IHPVAKDLLEYRSLQKLKTTYIDALPKILNPKTGRVHTSFNQ 666 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKI 764 T TGRL+S PNLQNIPI+T LG++IR+AFI S + L+SADYSQIELRI A I++ Sbjct: 667 HITATGRLSSSNPNLQNIPIRTPLGREIRKAFIPSTSDRYLLSADYSQIELRIAAEISQD 726 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 + L F N DIH A IF + + ++ MRR AK +NF ++YGI P+ LA +L I Sbjct: 727 SHLIDAFRNREDIHTATAKTIF--DTDDITKDMRRKAKEVNFGVLYGIQPYGLAQRLNIS 784 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 + EA I Y ++PG+ ++ T + GYV T+ GRR + + + S +IR E Sbjct: 785 QKEAKAIIDTYISKYPGLFSALQTTITEAAEKGYVTTLTGRRRYIENLRSRNRNIRMAAE 844 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 RAA+N PIQG+AADI + AM V ++++ ++ + MLLQ+HDELVFE EEE ++I Sbjct: 845 RAAMNTPIQGTAADIIKCAMGLVSEAIKKKRMQSAMLLQVHDELVFETTEEEKAALAEIA 904 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+KA VP++V I NW E Sbjct: 905 EGCMQKAAELCGLETVPVEVEIGTGKNWLE 934 >gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20] gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20] Length = 894 Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust. Identities = 341/989 (34%), Positives = 515/989 (52%), Gaps = 123/989 (12%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L +DG+S + RAFY P L DG+ N I F N++ K ++ E I V FD Sbjct: 6 LMAIDGNSILNRAFYGLPELLTTSDGIYTNGIYVFLNIMHKFIEEENPEYIC----VAFD 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ Y YKANR +PE L Q+PL++ A I +E++GFEADDI+ + + Sbjct: 62 LKAPTFRHNKYEGYKANRKGMPEELRVQVPLLKEVLDAMNIKRLEMEGFEADDILGSVSL 121 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEEKIDIEHVIKKWGIPPEKMV 180 AEK+G V +++ D+D QL+ P+T L + E+ D +++ +GI PE+ V Sbjct: 122 CAEKKGLEVILVTGDRDAFQLIGPSTRLKLPRTRGGKTEVEEYDYNKIVEVYGIKPEQFV 181 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++AL GD+ DNIPG+PGIG KTA L++EY NLEN+ + IK+K RE + + E A Sbjct: 182 DVKALAGDTSDNIPGVPGIGEKTALALIKEYNNLENLYNSLDSIKKKGLREKLETFKEQA 241 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LSR+ L L + N P L CD ++ Sbjct: 242 FLSRE----------------LALIERNMPSL---------------------CDIEELK 264 Query: 301 PVVLDINTTENKGIAIETEIDRDTT---IKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 V EIDR+ T K +F S D K L +Q Sbjct: 265 RV----------------EIDREKTYEIFKRLEFRSFID------------KFGLNDVQI 296 Query: 358 LSQYPINNDSYTKIV-NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 + +N KI N +++ + + D +F K AIAIS ++ Sbjct: 297 QNTVELN----VKIAKNASELESLKNNILKSRKVCIYHLIDKTGSFSQKLAAIAISPVED 352 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL 476 E ++D + + +D E K E+ + K GH++K + L Sbjct: 353 --------EAWYLDFTNNIDED---------EFFRQFKDVLEDGNIKKYGHDLKNFIVYL 395 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535 + GI G D M+ +Y+++ + ++ I+ +AQ++L+ + K + K D Sbjct: 396 NNRGIDFNGLAFDTMIGAYIINPSKETYTISELAQEYLNLSVKAVEKLAGKGKSFTLFKD 455 Query: 536 SQ---------VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 Q V H I S V ++ LL+ +Y ++ P++ ++ ME Sbjct: 456 MQPDVLSKTVGVYPHVI--SKVSRKIDSLLKEN----NQERLYYDIELPLVRTLADMEYY 509 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G +++ D L + S E+ + + + + IY L+GE+FN++SPKQLG ILF KL P KTK Sbjct: 510 GFKVNVDALVEFSKELQEKIDVVTKEIYTLAGEEFNINSPKQLGVILFEKLGLPIIKKTK 569 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 TG + T A+ LE++ + I++ ILE+RQL K+KSTYA+ L IN T ++H+ ++ Sbjct: 570 TG-YSTDAEVLEEL-SDRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFNQT 627 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKIT 765 T TGR++S EPNLQNIPIK ++ +KIR+ FI S L+ ADYSQIELR+LAHI Sbjct: 628 VTATGRISSTEPNLQNIPIKLEMSRKIRKVFIPSDENYLLLDADYSQIELRVLAHITNDE 687 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 + F N+ DIH AA +FG+ E+V+P MR AK +NF I+YGI F LA L+I R Sbjct: 688 NMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNFGIVYGIGDFSLAKDLKISR 747 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA YI Y R+P + +Y+ ++ G+V T+F RR + E+ S +IR+ ER Sbjct: 748 KEARAYIDGYLDRYPNVKKYMHDIVEEGKEKGFVTTMFMRRRYLPELKSRNFNIRSFGER 807 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 A+N PIQGSAADI + AM+ VH L+ KL ++++LQ+HDEL+ E ++E +I++ Sbjct: 808 VAMNTPIQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKILL 867 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ A ++L+VPL V IK +NW E Sbjct: 868 EGMQNA----VSLKVPLVVEIKSGSNWYE 892 >gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] Length = 920 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 342/992 (34%), Positives = 532/992 (53%), Gaps = 97/992 (9%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYR++YA +P ++ K GL +A+ GF N L ++L R +H Sbjct: 2 DKLFLLDAYALIYRSYYALLRSPRINSK--GLNTSAVLGFMNTLNEVLTKER----PTHI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD+ TFR+E +P YKA R + PE + +P+++ +A+ IP +++ GFEADDII Sbjct: 56 GVAFDH-GKTFRHEAFPQYKAQREETPEDIKLSVPIIKRILEAYRIPILQVDGFEADDII 114 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIP-PE 177 T +EG A +++ DKD QLV+ +Y ++ + V K+GI P Sbjct: 115 GTVATRFGREGVAAYMLTPDKDYGQLVADNVYIYRPRHGGGYEVMGPKEVQAKYGIASPL 174 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 ++V L AL GDS DN PG PG+G KTAA L+ E+G++ EN++ A Sbjct: 175 QVVDLLALMGDSADNFPGCPGVGEKTAAKLIGEFGSV----------------ENLI--A 216 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 TA+L KL R V + ED + ++ ++ V T D Sbjct: 217 NTAQLKGKL---REKVEGAV-------EDIKMSKFLATIR--------TDVPTDIRLDDL 258 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +E + E K I TE+ +F+S + +N + QK +L Sbjct: 259 KVE------SPDEAKLDQIFTEL---------EFNSFRKRM--LNKAEKKQKTDNLQLDF 301 Query: 358 LSQYPINNDSYTKIVN---TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 ++ P + S + N K I Q +ET A D F + I +L Sbjct: 302 FAENPTDGPSVAENANFETLKTIPHEYQLIETEDEAR-----RLYDFFRTNKIL----SL 352 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFFENEHFLKIGHN 468 D + ++ +E + LS + +I++ K +E+ LK+G N Sbjct: 353 DTETTSTNAIEAELVGLSFAVEERKAFYVAIPANREEALKIVAIFKPLYEDPEILKVGQN 412 Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524 IKYD VL YG+ + G D M+ Y+L H++ +A+ +L Y +E++ R Sbjct: 413 IKYDIEVLRHYGVEVAGPMFDTMIAHYLLQP-ELRHNMDYMAEVYLGYRTVHIEELIGPR 471 Query: 525 -KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 ++ + +S + + E+A E++++ L+L +L PKL + ++ ++ P++ V++ M Sbjct: 472 GRNQKNMRDLSPTDIYEYACEDADITLRLKNVLEPKLDEAGVARLFHDIEMPLVGVLADM 531 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSG 642 E+ G+ +D + L + S +K + ++E++IY+L+GE+FN+SSP+Q+GDILF K+K Sbjct: 532 ELNGVCLDTEALHETSEVFNKRMTTIEQHIYELAGEQFNISSPRQVGDILFGKMKIVDKP 591 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTGQ+ T+ + L+Q+ +PII IL +R L K+ STY D+LP IN RT R+HT Sbjct: 592 KKTKTGQFVTSEEVLQQLRS-KSPIIDEILNYRGLKKLLSTYVDALPKLINPRTGRIHTS 650 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 ++ T TGRL+S +PNLQNIP++ D G++IR+ FI P SADYSQIELRI+AH++ Sbjct: 651 FNQTVTATGRLSSSDPNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLS 710 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + + + F DIH AA I+ +I +V+P R+ AK NF IIYGI+ + LA ++ Sbjct: 711 EDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYGITTYGLAQRMD 770 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 I EA D I YF FP + Y+E+ K R+ GY ET+F RR + +INS +++R Sbjct: 771 ISNGEARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINSHNATVRGF 830 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAPIQGS ADI + AM+ +H+ + + +KM+LQ+HDEL F V EE + Sbjct: 831 AERNAINAPIQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVFPEEKEQVER 890 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I+V M+ A LRVPL + NW E Sbjct: 891 IVVEEMQGA----YKLRVPLVADAGWGKNWLE 918 >gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] Length = 931 Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust. Identities = 337/982 (34%), Positives = 525/982 (53%), Gaps = 82/982 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +FL+DG + ++R++YA L+S + G P AI GF N + K+ + R + V Sbjct: 16 MFLLDGMALVFRSYYA--LMSARMQTQSGFPTGAIYGFINTILKIEETYRPD----FLVV 69 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E +PDYKA RP P L+ QL + A GIP ++ GFEADDII T Sbjct: 70 AFDSKEKTFRHEAFPDYKAQRPAPPTDLIQQLGKILEIVPAMGIPMLKRPGFEADDIIGT 129 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPEKM 179 T E + + +++ DKD QLV L ++ E V +G+ PE+ Sbjct: 130 LTKKFE-DRCNLFLVTPDKDFAQLVHDGVKLLKPARQNDEFLLYGAEEVKSHYGVYPEQF 188 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + + AL GDS DNIPG PGIG KTAA L+ YG++ I N ++ + R E++L+ Sbjct: 189 LDMLALMGDSSDNIPGAPGIGPKTAANLINRYGSIAKIYENLYELRPRAR-ESLLKSKAA 247 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 R L+ ++TD+ I + L+ L + + L+ + LEF L R ++ + Sbjct: 248 LENGRFLMTIKTDMDIDLTLDDLKQKSPDLDFLLPLFEELEFRTLAARFKSSPEK----- 302 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 K Q +S +D + P Q Sbjct: 303 ---------------------------KNEQAASDADLEFNFGANVDPN------FQFAK 329 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 + P + +YT I + D+ Q +KL ++ +F T ++ ++ + I+ S Sbjct: 330 KQPRDLGNYTLIQDEDDLNQLAEKLGSLKEFAFDTETTSLTTLDAELVGISFS------- 382 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 F F V+ ++ + + T + LK EN KIG N+KYD LVL Y Sbjct: 383 --FAPGEAFF---VYCAESALSRETAIR----VLKPILENPEIGKIGQNLKYDMLVLKNY 433 Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISD 535 G+ ++ D ML SYVL+ ++ H++ +A L + +++ KS I ++ Sbjct: 434 GVRVQPVRFDTMLASYVLNPDKT-HNLDDLAADHLGLETVKYADLVGKGKSEKSIYEVEP 492 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + ++A ++++V LQL +L L E L + E L+ P++ V++ ME G+++D + Sbjct: 493 KTLSDYACQDADVALQLKNVLEKALGENEPLKKICEELEFPLVGVLADMEHEGVRLDVAV 552 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 LK +S + L + + IYD +GE FNL SPKQL +ILF KLK P+ +TKTG + T Sbjct: 553 LKTLSETLGTELGRVSKIIYDAAGEAFNLDSPKQLSEILFEKLKLPAKRRTKTG-YSTDV 611 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 + LE++ P+ K ILE+R L K+KSTY D+LPN ++ +T R+HT ++ TGRL+ Sbjct: 612 RVLEEL-AESFPVAKQILEYRSLQKLKSTYVDALPNLVHPKTGRIHTSFNQHIAATGRLS 670 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 S PNLQNIPI+T++G++IR AF+ S L+SADYSQIELRI A ++ + F+N Sbjct: 671 SSNPNLQNIPIRTEIGREIRGAFVPSDAHHTLLSADYSQIELRIAAELSGDPTMLGAFQN 730 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIH A IF ++V+ MRR AK +NF ++YGI PF LA +L I ++EA + I Sbjct: 731 REDIHSTTAKLIF--ETDEVTKDMRRKAKEVNFGVLYGIMPFGLAQRLDISQAEAKEIIS 788 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 +Y ++P I Y+E + R +GYVET+ GRR + ++NS SIR+ ERAAIN PIQ Sbjct: 789 QYKEKYPMIFSYLEGILDKARASGYVETLLGRRRYIRDLNSKNFSIRSAAERAAINTPIQ 848 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AAD+ ++AM+ + + L ++M+LQ+HDEL+F + E E+ +++ M +A Sbjct: 849 GTAADMIKKAMLGIASDIHKQSLRSRMILQVHDELLFNMHESEVDILPELVQREMIEAA- 907 Query: 954 PKINLR-VPLKVNIKVSNNWQE 974 I +R VP++V + NW E Sbjct: 908 KAIGIRNVPIEVEVGTGANWIE 929 >gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17] gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17] Length = 920 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 343/992 (34%), Positives = 532/992 (53%), Gaps = 97/992 (9%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYR++YA +P ++ K GL +A+ GF N L ++L R +H Sbjct: 2 DKLFLLDAYALIYRSYYALLRSPRINSK--GLNTSAVLGFMNTLNEVLTKER----PTHI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD+ TFR+E +P YKA R + PE + +P+++ +A+ IP +++ GFEADDII Sbjct: 56 GVAFDH-GKTFRHEAFPQYKAQREETPEDIKLSVPIIKRILEAYRIPILQVDGFEADDII 114 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGIP-PE 177 T +EG A +++ DKD QLV+ +Y E + + V K+GI P Sbjct: 115 GTVATRFGREGVATYMLTPDKDYGQLVADNVYIYRPRHGGGYEVMGPKEVQAKYGIASPL 174 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 ++V L AL GDS DN PG PG+G KTAA L+ E+G++ EN++ A Sbjct: 175 QVVDLLALMGDSADNFPGCPGVGEKTAAKLIGEFGSV----------------ENLI--A 216 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 TA+L KL R V + ED + ++ ++ V T D Sbjct: 217 NTAQLKGKL---REKVEGAV-------EDIKMSKFLATIR--------TDVPTDIRLDDL 258 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +E + E K I TE+ +F+S + +N + QK +L Sbjct: 259 KVE------SPDEAKLDQIFTEL---------EFNSFRKRM--LNKAEKKQKTDNLQLDF 301 Query: 358 LSQYPINNDSYTKIVN---TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 ++ P + S + N K I Q +ET A D F + I +L Sbjct: 302 FAENPTDGPSVAENANFETLKTIPHEYQLIETEEEAR-----RLYDFFRTNKIL----SL 352 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDST------GKNTLTKEILSYLKKFFENEHFLKIGHN 468 D + ++ +E + LS + +I++ K +E+ LK+G N Sbjct: 353 DTETTSTNAIEAELVGLSFAVEERKAFYVVIPANREEALKIVAIFKPLYEDPEILKVGQN 412 Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524 IKYD VL YG+ + G D M+ Y+L H++ +A+ +L Y +E++ R Sbjct: 413 IKYDIEVLRHYGVEVAGPMFDTMIAHYLLQP-ELRHNMDYMAEVYLGYRTVHIEELIGPR 471 Query: 525 -KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 ++ + +S + + E+A E++++ L+L +L PKL + ++ ++ P++ V++ M Sbjct: 472 GRNQKNMRDLSPTDIYEYACEDADITLRLKNVLEPKLDEAGVARLFRDIEMPLVGVLADM 531 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSG 642 E+ G+ +D + L + S +K + ++E++IY+L+GE+FN+SSP+Q+GDILF K+K Sbjct: 532 ELNGVCLDTEALHETSEVFNKRMTAIEQHIYELAGEQFNISSPRQVGDILFGKMKIVDKP 591 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTGQ+ T+ + L+Q+ +PII IL +R L K+ STY D+LP IN RT R+HT Sbjct: 592 KKTKTGQFVTSEEVLQQLRS-KSPIIDEILNYRGLKKLLSTYVDALPKLINPRTGRIHTS 650 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 ++ T TGRL+S +PNLQNIP++ D G++IR+ FI P SADYSQIELRI+AH++ Sbjct: 651 FNQTVTATGRLSSSDPNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLS 710 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + + + F DIH AA I+ +I +V+P R+ AK NF IIYGI+ + LA ++ Sbjct: 711 EDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYGITTYGLAQRMD 770 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 I EA D I YF FP + Y+E+ K R+ GY ET+F RR + +INS +++R Sbjct: 771 ISNGEARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINSHNATVRGF 830 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAPIQGS ADI + AM+ +H+ + + +KM+LQ+HDEL F V EE + Sbjct: 831 AERNAINAPIQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVFPEEKEQVER 890 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I+V M+ A LRVPL + NW E Sbjct: 891 IVVEEMQGA----YKLRVPLVADAGWGKNWLE 918 >gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B] gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B] Length = 885 Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust. Identities = 345/981 (35%), Positives = 533/981 (54%), Gaps = 110/981 (11%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N ++DGSS +RAFYA PLL K G+ NAI GF ML +N+ + SH V Sbjct: 3 KNIFLIIDGSSLFFRAFYALPLLKTKR-GIYTNAIYGFVMML----ENAIERVKPSHIVV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E+Y DYK R K P L Q PLVR + I ++ +EADDI T Sbjct: 58 CFDRKGKTFRSELYKDYKGTRQKTPNELEQQFPLVRDILKYMNIVVLDSPVYEADDIAGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 + IA KEG+ +++ DKD QLV T + T K E ++++ + +GI P++ Sbjct: 118 LSLIASKEGYKSYLLTGDKDYYQLVDDNTNVLMTRKGITELEVVNLQSINDDYGISPQEF 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+ L GDS DNIPG+PGIG KT L++EY +EN+ + S I KK +EN+ E Sbjct: 178 IDLKGLMGDSSDNIPGVPGIGPKTGLKLIKEYSTIENLYNHLSEISGKKLKENLEENKVQ 237 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A +S+KL I+ + + P +S LK E+ D N+ Sbjct: 238 AFMSKKL--------------GTIVRNIDLPVGLSDLKIKEY-------------DYENL 270 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 + D +F+S+ ++ P+K E+ +++S Sbjct: 271 SKLYRDF-----------------------EFNSIL--------KRLPEKYQKEKTEEIS 299 Query: 360 Q--YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + I+NDS I+ ++ ++T S +FK I+D P IAI L + Sbjct: 300 DTFFQISNDS---------IEDIIENIKTSKSFAFKFISDGKIYEGIDPFKIAI--LPKG 348 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 +TS ID + K+ LS LK +E++ K+G+++K D +VL Sbjct: 349 YNTSV------IDYN--------------KDNLSNLKALWEDDSIEKLGYDLKEDIIVLQ 388 Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKI 533 I ++ + D M+ Y+L+S S+++I +A + + K E+L +I Sbjct: 389 YNKIDLKNYCHDSMIAEYLLNSTESNYEIDHLASSYFNKAYKSEEELLGKGVKKKKFQEI 448 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 + + + N++ ++ L K+ E + +Y ++ P+I+V++ MEI GI+ D + Sbjct: 449 DEGDLNSYFSYILNMVYKISPLQMQKIEAEGMKDLYVNVELPLIEVLANMEIVGIRTDVN 508 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 +L ++ +I + + LE NIY + E+FN++SPKQLG ILF K+ P KTKTG + T+ Sbjct: 509 ILNEIDEKIKERINDLEFNIYKDADEQFNINSPKQLGQILFEKMDLPVIKKTKTG-YSTS 567 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 A LE++ G + II NILE+R++SKIK+TY D L + INK+T R+H+ ++ T TGR+ Sbjct: 568 ADVLEKLR-GKSLIIDNILEYRKISKIKNTYIDGLRDVINKKTGRIHSRFNQTVTSTGRI 626 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S EPNLQNIPIKT G+ IR+A +S L+ +DYSQIELR+LA ++ T + F + Sbjct: 627 SSTEPNLQNIPIKTHEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFAD 686 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 LDIHR A+E+F ++VS ++R AK +NF I+YGIS + L+ L IPR EA YI Sbjct: 687 GLDIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVYGISDYGLSQNLNIPRKEAKTYID 746 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 Y F GI +Y+ + + GYVET+ RR + E+ + +IR+ ER A+N PIQ Sbjct: 747 NYLGHFQGIKKYMNDIIHVGTEKGYVETLLHRRRYIPELKAKNFNIRSFGERIALNTPIQ 806 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI + AM+ V+K L+ L K++LQIHDELV + P+EE+ +I+ M+ A + Sbjct: 807 GTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEEVAEVCEIMKDVMDNALI 866 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 ++VPL V++K + E Sbjct: 867 ----MKVPLSVSMKTGKSLYE 883 >gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83] gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83] Length = 926 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 336/988 (34%), Positives = 526/988 (53%), Gaps = 86/988 (8%) Query: 6 HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 LFL+D + I+RA+YA R G A+ GF L +L+ E H AV+ Sbjct: 4 RLFLLDAYALIFRAYYAFIRSPRIDSTGRDTGAVFGFALTLLDILEKESPE----HIAVV 59 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD P +FR+ Y +YKA R + PE + +PL++ AF IPA+E+ FEADD I T Sbjct: 60 FDPPGGSFRHREYAEYKAQREETPEGIRIAVPLIKEILAAFRIPAVEVPDFEADDTIGTL 119 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGIP-PEKMV 180 AE++G AV +++ DKD QLVS +Y E V +K+G+ P +M+ Sbjct: 120 AKQAEEQGLAVRMVTPDKDFGQLVSERIKIYRPKSGGGYETWGPAEVCEKFGLSIPGQMI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L GDS DNIPG GIG KTA LL EYG+++ I + +K ++ I E E Sbjct: 180 DYLGLVGDSSDNIPGCKGIGAKTAEKLLAEYGSIDGIYAHQDELKGAVAKK-IQEGEEQT 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 R SR L +RTD PI E + + ALEF L+ R+ +T DA Sbjct: 239 RFSRYLATIRTDAPIVFDSEAYRRTSPDMAAVRECFAALEFRTLLKRLEST-PTDAP--- 294 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER------ 354 T F+ + + +++ P LF E Sbjct: 295 --------------------------ATDLFAGM------VQAQEPPTDLFGEGTDATGL 322 Query: 355 -LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 L+KL+ P YT + ++I ++ SF TD+ DA + +AI T Sbjct: 323 PLKKLTDVP---HEYTILKTEEEIADCIRMFSATPCFSFDTETDSKDALRANIVAI---T 376 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 L + +F FI L + GK L L+ F + K+G N+KYD Sbjct: 377 LCAESGRAF-----FIPLP---EDEEIGKRRL-----DLLRPLFADTAIGKVGQNMKYDI 423 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 VL RYGI +RG D M+ Y+L H++ +A+ L Y +++ S K + Sbjct: 424 QVLSRYGIEVRGQLFDTMIAHYLLFPDLR-HNMDEMAETLLGYCTVHYSDLVGSDKQEVH 482 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 I ++ + ++A+E++++ QL+ L L + ++E ++ P++ V++ ME +G++ Sbjct: 483 IRQVPLQNLADYAMEDADITWQLYERLNAMLSEAGMTSLFESIEMPLVPVLANMERSGVK 542 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTG 648 +D ++L++ ++ + + + +E+ IY L+G FN++SP Q+G +LF +L+ K TK+G Sbjct: 543 LDTEVLRRTASGLGEEMQRIEDEIYRLAGHSFNINSPSQVGTVLFEELQITEKPKKTKSG 602 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T + L ++ +PI++ IL++R + K+ STY ++LP + ++HT ++ Sbjct: 603 SYSTNEEILVKLQ-EKHPIVRLILDYRGIKKLLSTYVEALP-EMRYPDGKLHTSFNQTVA 660 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI--SADYSQIELRILAHIAKITP 766 TGRL+S PNLQNIPI+T++G+ +R AF+ P + I SADYSQIELR++AH+++ Sbjct: 661 TTGRLSSSNPNLQNIPIRTEVGRGLRAAFV-PDNDECIFMSADYSQIELRLMAHLSEDES 719 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L Q F + DIHR A++I+ + + +V+ MRR AKT NF IIYGIS F L+ +L I R+ Sbjct: 720 LIQAFLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAFGLSERLNISRT 779 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA I+ YF +PG+ Y++++ ++ GYV T+FGR+ +INS + +R ER Sbjct: 780 EAKALIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFLRDINSANAVVRGYAERN 839 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAPIQGSAAD+ + AMI +H+ + + KL ++M+LQ+HDEL F V E +++ Sbjct: 840 AINAPIQGSAADLIKLAMIRIHEEITERKLRSRMILQVHDELNFNVLRPEAAEVRELVRS 899 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME +P +LRVPL I NW E Sbjct: 900 CME-GVMP--SLRVPLIAEIGEGANWLE 924 >gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] Length = 915 Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust. Identities = 329/986 (33%), Positives = 508/986 (51%), Gaps = 104/986 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDG YRAF+A P G P NA+ GF +ML L++ + + F V Sbjct: 12 IMLVDGHGLAYRAFHALPDTLATASGEPTNAVFGFTSMLLDALRSYHPDYVVVSFDV--- 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ Y YKA+R +P+ L Q+ + A IP +G+EADD+IAT Sbjct: 69 --GRTFRHDRYEAYKAHRAPMPDDLRRQMERIHEVLAALNIPVFTREGYEADDVIATLAR 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPEKMVC 181 +A + +V +++ D DL+QL + ++ D E VI+++G PPE++ Sbjct: 127 LAAERHMSVLVVTGDSDLLQLADGAVRIILPGRQRFGDYRVFDREAVIERYGFPPERIPE 186 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +AL GD+ DNIPG+PGIG KTA L+Q Y +LE + + IK + R ++ E+ Sbjct: 187 YKALVGDTSDNIPGVPGIGAKTATALVQAYDSLEAMREHIDEIKPPRARASLAEH----- 241 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 F +AL +L Sbjct: 242 ---------------------------------FEQALHGRELAT--------------- 253 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 VV DI+ + + + DRD ++ F L +T +N P R Q + Sbjct: 254 VVRDIDLELDLDTCVLGDYDRDRVLEV--FRELEFRT-LVNRLPEPT-----RPQVTTAP 305 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 P T + + +++L + + + + T + D ++ + IA++T Q+ S Sbjct: 306 PAPPAERTIVRFDNQLGDLLEELRSAPAIALDVETTSTDPMTARLVGIALATSGQR---S 362 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 F V H + D +E LS L + + + H+ KYD LVL R G Sbjct: 363 FYVPV------NHANDDEQLDADEVREALSPL---LADPNTVVYAHHGKYDALVLERAGY 413 Query: 482 SM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSSIPIDKISDSQ 537 R D M+ +Y+L G ++ D+ S+A L EI + ++ + +D Sbjct: 414 PRPRIAFDTMIAAYLL--GENALDLKSLAFNRLGMEMTEITTLIGRGRNQLTMDLTDVQA 471 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++A + +L +L+P L ++ ++ ++ P+IDV+ ME GI +D DLL+ Sbjct: 472 AGDYACADVEATYRLVEVLQPDLEAQQQERLFREIEMPLIDVLIDMEKVGIAVDVDLLRD 531 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 +S +++ L LE IY L+ +FN++S +QL +LF +L P+G +TKTG + + + L Sbjct: 532 LSRQLTGQLAELEREIYGLAKHEFNINSTRQLATVLFDELGLPAGRRTKTG-YSVSQEVL 590 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E + +PI+ ILE+RQL K+KSTY D+LP +N T R+HT ++ TGRL+S + Sbjct: 591 ENLRHA-HPIVDCILEYRQLLKLKSTYVDALPEQVNPETGRIHTSFNQTIAATGRLSSTD 649 Query: 718 PNLQNIPIKTDLGQKIRRAFIS---PPTKK------LISADYSQIELRILAHIAKITPLY 768 PNLQNIP++T+LG+ +RRAFI+ P + L+SADYSQIELR++AH++ L Sbjct: 650 PNLQNIPVRTELGRSVRRAFIADNRPGYRPFDEEAVLLSADYSQIELRLMAHLSGDERLV 709 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F DIH AA++FGV +E+V+P MRR AKT+NF I+YG+ + LA + R +A Sbjct: 710 HAFREGQDIHAATAADVFGVPLEQVTPDMRRVAKTVNFGIMYGMQAYGLARDTGMSRQDA 769 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +I RY R PG+ ++E+TK Q GYV ++FGRR + +I+S + R ER AI Sbjct: 770 QRFIDRYMARLPGVRAFLERTKRQALQQGYVTSMFGRRRYTPDIDSSNVNRRLAAERMAI 829 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 N P+QGSAADI + AMI VH + L ++MLLQ+HDEL+FEVP E+ T + + V M Sbjct: 830 NMPLQGSAADIMKIAMIRVHDEMRRRGLRSRMLLQVHDELLFEVPRSELRTMADLAVDVM 889 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 EK + L VPL V + NW E Sbjct: 890 EKV----VTLNVPLVVEVAAGANWDE 911 >gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] Length = 926 Score = 515 bits (1326), Expect = e-143, Method: Compositional matrix adjust. Identities = 336/988 (34%), Positives = 526/988 (53%), Gaps = 86/988 (8%) Query: 6 HLFLVDGSSFIYRAFYATPLLSR-KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 LFL+D + I+RA+YA R G A+ GF L +L+ E H AV+ Sbjct: 4 RLFLLDAYALIFRAYYAFIRSPRIDSTGRDTGAVFGFALTLLDILEKESPE----HIAVV 59 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD P +FR+ Y +YKA R + PE + +PL++ AF IPA+E+ FEADD I T Sbjct: 60 FDPPGGSFRHREYAEYKAQREETPEGIRIAVPLIKEMLAAFRIPAVEVPDFEADDTIGTL 119 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGIP-PEKMV 180 AE++G AV +++ DKD QLVS +Y E V +K+G+ P +M+ Sbjct: 120 AKQAEEQGLAVRMVTPDKDFGQLVSERIKIYRPKSGGGYETWGPAEVCEKFGLSIPGQMI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L GDS DNIPG GIG KTA LL EYG+++ I + +K ++ I E E Sbjct: 180 DYLGLVGDSSDNIPGCKGIGAKTAEKLLAEYGSIDGIYAHQDELKGAVAKK-IQEGEEQT 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 R SR L +RTD PI E + + ALEF L+ R+ +T DA Sbjct: 239 RFSRYLATIRTDAPIVFDSEAYRRTSPDMAAVRECFAALEFRTLLKRLEST-PADAP--- 294 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER------ 354 T F+ + + +++ P LF E Sbjct: 295 --------------------------ATDLFAGM------VQAQEPPTDLFGEGTDATGL 322 Query: 355 -LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 L+KL+ P YT + ++I ++ + SF TD+ DA + +AI T Sbjct: 323 PLKKLTDVP---HEYTILETEEEIADCIRMFSSTPCFSFDTETDSKDALRANIVAI---T 376 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 L + +F FI L + GK L L+ F + K+G N+KYD Sbjct: 377 LCAESGRAF-----FIPLP---EDEEIGKRRL-----DLLRPLFADTAIGKVGQNMKYDI 423 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIP 529 VL RYGI +RG D M+ Y+L H++ +A+ L Y +++ S K + Sbjct: 424 QVLSRYGIEVRGQLFDTMIAHYLLFPDLR-HNMDEMAETLLGYRTIHYSDLVGSDKQEVH 482 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 I ++ + ++A+E++++ QL+ L L + ++E ++ P++ V+ ME +G++ Sbjct: 483 IRQVPLQNLADYAMEDADITWQLYERLNAMLSEAGMTSLFESIEMPLVPVLVDMERSGVK 542 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTG 648 +D ++L++ ++ + + + +E+ IY L+G FN++SP Q+G +LF +L+ K TK+G Sbjct: 543 LDTEVLRRTASRLGEEMQRIEDEIYRLAGHSFNINSPSQVGTVLFEELQITEKPKKTKSG 602 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T + L ++ +PI++ IL++R + K+ STY ++LP + ++HT ++ Sbjct: 603 SYSTNEEILVKLQ-EKHPIVRLILDYRGIKKLLSTYVEALP-EMRYPDGKLHTSFNQTVA 660 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI--SADYSQIELRILAHIAKITP 766 TGRL+S PNLQNIPI+T++G+ +R AF+ P + I SADYSQIELR++AH+++ Sbjct: 661 TTGRLSSSNPNLQNIPIRTEVGRGLRAAFV-PDNDECIFMSADYSQIELRLMAHLSEDES 719 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L Q F + DIHR A++I+ + + +V+ MRR AKT NF IIYGIS F L+ +L I R+ Sbjct: 720 LIQAFLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAFGLSERLNISRT 779 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA I+ YF +PG+ Y++++ ++ GYV T+FGR+ +INS + +R ER Sbjct: 780 EAKALIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFLRDINSANAVVRGYAERN 839 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 AINAPIQGSAAD+ + AMI +H+ + + KL ++M+LQ+HDEL F V E +++ Sbjct: 840 AINAPIQGSAADLIKLAMIRIHEEITERKLRSRMILQVHDELNFNVLRPEAAEVRELVRS 899 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME +P +LRVPL I NW E Sbjct: 900 CME-GVMP--SLRVPLIAEIGEGANWLE 924 >gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824] gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824] gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018] Length = 871 Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust. Identities = 325/979 (33%), Positives = 528/979 (53%), Gaps = 122/979 (12%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG+S + RAFYA P L+ +GL N I GF ML K+ R E + F Sbjct: 3 RLLVLDGNSLMNRAFYALPELTNA-EGLHTNGIYGFMTMLIKM----RDEIKPDYIVTTF 57 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR++ Y DYKA R K+P L Q P+++ + I EI GFEADD+I T Sbjct: 58 DRKAPTFRHKEYEDYKAGRKKMPPELSEQFPVLKELLEKLAINIFEIDGFEADDLIGTLA 117 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A+++G V I++ DKD +QL + ++E D +I+++G+ P + + Sbjct: 118 CFAKEKGIEVYIVTGDKDALQLADDNVKVVINKKGMTEKEIYDKNRMIEEFGVTPVQFID 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GD+ DNIPG+PGIG KTA L+QEYG++EN+L N IK KK +EN+ YAE A Sbjct: 178 VKGLMGDNSDNIPGVPGIGPKTAFKLIQEYGSVENVLDNIQNIKGKKIKENLENYAEQAV 237 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 S+KL + T+VPI I +E + R ++D + A Sbjct: 238 FSKKLATIMTNVPIEIDIEEI------------------------RSKESFDVEGAR--- 270 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 ++ QF S+ ++ +N E +E + ++ Sbjct: 271 ----------------------HLLRRLQFKSIIEKIPSLNVEAEKSDFVVE-YNLIDEF 307 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASF--KIITDTMDAFHSKPIAIAISTLDQKDD 419 P ++ ++ I +T+ + +IG+ KI DT+ Sbjct: 308 PKFHELFSAIKDTEIYMSY-----SIGNGELYSKIYIDTI-------------------- 342 Query: 420 TSFKVE--TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 KVE T +DL Q+ +++L LK+FFEN+ KI H+ K VL Sbjct: 343 -FMKVEEKTYIVDLKKIIEQNR-------EDVLKDLKEFFENKKIAKIIHDSKNMYTVLM 394 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536 + GI + D + Y+++ + +++ A++ L L + I I ++ Sbjct: 395 KNGIKIENLAFDTAIAEYLINPSKKEYNLKDAAEEMLLLD----LTGEDNDIKIKEVY-- 448 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 V+ +++ L+ K+ + +Y +++ P+I+V+S ME G +++++ L+ Sbjct: 449 -----------VMDKIYNKLKDKIKEYDMDELYYKVELPLIEVLSSMESEGFKVEKNKLQ 497 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 Q+ + + + +++ IY+++GE+FN+SSPKQLG ILF KL P KTKTG + T A+ Sbjct: 498 QIGDKFTVEIAKVKDEIYNMAGEEFNISSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEV 556 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE++ +PII+ ++ +RQL+K+ STY + L I+ +++H+ ++ T TGRL+S Sbjct: 557 LEKL-MDKHPIIEKVVYYRQLTKLYSTYVEGLKPVID-VDEKIHSSFNQTVTTTGRLSST 614 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSL 775 EPNLQNIPIK ++G++IR+ F+ +I SADYSQIELR+LAHIA L F++ Sbjct: 615 EPNLQNIPIKNEMGREIRKVFVPENDNCIILSADYSQIELRVLAHIADDENLINAFKHHS 674 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+E+F V IE+V+ +MR +AK +NF I+YGIS F LA +++ + EA +YI Y Sbjct: 675 DIHTKTASEVFRVPIEEVTSRMRSNAKAVNFGIVYGISDFSLAQDIKVSKKEAKEYIDTY 734 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+P + +Y+E ++N YV TI RR EI S ++ ER A+N PIQGS Sbjct: 735 FERYPNVKKYLEDIVVTAKKNMYVNTIMNRRRIIPEIASSNKIVKGFGERLAMNTPIQGS 794 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD+ + +M++V+ ++ KL ++++LQ+HDEL+ V ++E+ +++ ME+ Sbjct: 795 AADLIKLSMVNVYSKIKQLKLKSRLILQVHDELILNVHKDELEKVKELVKLEMEEV---- 850 Query: 956 INLRVPLKVNIKVSNNWQE 974 + L+VPL+V+I+ N W E Sbjct: 851 MELKVPLEVDIESGNTWYE 869 >gi|303242091|ref|ZP_07328582.1| DNA polymerase I [Acetivibrio cellulolyticus CD2] gi|302590385|gb|EFL60142.1| DNA polymerase I [Acetivibrio cellulolyticus CD2] Length = 897 Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust. Identities = 319/986 (32%), Positives = 523/986 (53%), Gaps = 106/986 (10%) Query: 3 KENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 K L ++DG+S + RAFY T LL+ DGL NA+ GF N++ K ++ E Sbjct: 2 KRQKLMVIDGNSILNRAFYGLQGTNLLATS-DGLYTNAVFGFINIMNKYIE----EENPQ 56 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + V FD A TFR++ + YKANR +P+ L Q+P+++ A I +E++GFEADD Sbjct: 57 YICVAFDLKAPTFRHKQFDGYKANRKGMPDELRVQVPVIKEVLDAMCIKRLEMEGFEADD 116 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEEKIDIEHVIKKWG 173 I+ + + A+++ V II+ D+D +QL T + + E+ D + +K+ Sbjct: 117 ILGSISLCAQEKDIDVIIITGDRDALQLAGKGTRIKIPKTKGGKTETEEYDYNTIREKYS 176 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P + + ++AL GD+ DNIPG+PG+G KTA L++ Y +LEN+ N +I +K +E + Sbjct: 177 IDPVQFIDVKALMGDTSDNIPGVPGVGEKTALDLIKTYNSLENLYDNLEQITKKGLKEKL 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 Y E A +S+ L + ++P + L+ + + P+L + LEF I++ Sbjct: 237 ETYKEQAFMSKNLAAIDRNMPFLCHFDELVRNEFDKPKLYELFRRLEFKSFIDKFGLRDS 296 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 N IAIETEI Sbjct: 297 QPCHNC--------------IAIETEI--------------------------------- 309 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 I + + + QK+ +F + D +D F +K + +S Sbjct: 310 -----------------IDDGQGVMDLKQKIHEAKEVAFYYLIDRIDKFTNKLAGLCVSI 352 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 K+ +S+ F++++ +++ E L K FE+ K GH++K Sbjct: 353 ---KEGSSY-----FLNINERLTEN---------EFLEGFKSIFEDGEIKKYGHDLKNFI 395 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIP 529 + L + GI + G D M+ +Y+++ R ++ I+ +A +L+ K E+ KS +P Sbjct: 396 VYLKQNGIELNGVAFDTMIGAYIINPSRETYTISELAADFLNTNVKPIEEMAGKGKSFLP 455 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 + +++ +I + + KL L++Y +++ P++ V++ ME G + Sbjct: 456 FGSMDVEELKNVVGLYPEIIYKAMKKIDDKLNENDQLNLYYKIELPLVRVLADMEFYGFK 515 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 I+ + L +S ++ + + L IY+L+GE+FN++SPKQLG +LF KL+ P KTKTG Sbjct: 516 ININELTVISRQLDEKINQLTLKIYELAGEEFNINSPKQLGVVLFEKLELPIIKKTKTG- 574 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T A+ LE++ + I+ NILE+RQL K+KSTY + L IN T ++H+ ++ T+ Sbjct: 575 YSTDAEVLEEL-AEKHEIVSNILEYRQLVKLKSTYIEGLMAVINPHTGKIHSSFNQTVTV 633 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLY 768 TGR++S EPNLQNIPIK ++G+ IR+AF+ KL+ ADYSQIELR+LAHI + Sbjct: 634 TGRISSTEPNLQNIPIKLEMGRNIRKAFVPCDGNYKLVDADYSQIELRVLAHITDDENMI 693 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F N+ DIH A+++FGV E+V+ +R AK +NF I+YGI F L+ L I R EA Sbjct: 694 GAFNNNEDIHTSTASKVFGVPNEEVTSALRSKAKAVNFGIVYGIGDFSLSKDLGITRKEA 753 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +YI Y ++ + +Y+ ++ G+V T+F RR + E+ + ++R+ ER A+ Sbjct: 754 RNYIDGYLDKYANVRKYMHDIVAQGKEFGFVTTMFNRRRYLPELKASNFNVRSFGERIAM 813 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 N PIQGSAADI + AM+ VH L +L ++++LQ+HDEL+ E E E+ + I+ SM Sbjct: 814 NTPIQGSAADIIKIAMVMVHSELNRRQLKSRLILQVHDELIIEAHESELEEVTMILKESM 873 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A L+VPL V++K N+W E Sbjct: 874 ENATA----LKVPLSVDVKSGNSWYE 895 >gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B] gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B] Length = 892 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 331/982 (33%), Positives = 531/982 (54%), Gaps = 108/982 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 +FL DG+ +YRAFYA + GL NA+ G ML K L+ + V+ Sbjct: 4 MFLFDGTGLVYRAFYAIDQSLQTSSGLHTNAVYGLTKMLIKFLKEHISIGKDACVFVLDS 63 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 R +I YKANRP P++LL Q+P V A GI ++I+GFEADDIIAT + Sbjct: 64 KGGSKKRKDILETYKANRPSTPDLLLEQIPYVEELVDALGIKVLKIEGFEADDIIATLSK 123 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI------DIEHVIKKWGIPPEKMV 180 E + V II+ DKDL+QLVS ++ E I D VI+K+GI PE+ Sbjct: 124 KFESDFEKVNIITGDKDLLQLVSDKVFVWRV--ERGITDLVLYDRNKVIEKYGIYPEQFK 181 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +L GD IDNIPG+ GIG KTA LL++Y +LEN+L N N+L T Sbjct: 182 DYLSLVGDQIDNIPGVKGIGKKTAVSLLKKYNSLENVLKNI----------NLL----TE 227 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +L R +LED K++E +LI YD Sbjct: 228 KLRR------------------LLEDSKE----DLQKSIELVELI------YD------- 252 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 V +D+ E I + D +K + S ++N + E+L+K Sbjct: 253 -VPMDVEKDE----IIYRGYNPDKLLKVLKKYEFSSIIKELNLQ--------EKLEK--- 296 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 Y + N +++ +++E + S T ++D F +K + I+IST++ K Sbjct: 297 ------EYILVDNEDKLKKLAEEIEKYKTFSIDTETTSLDPFEAKLVGISISTMEGK--- 347 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 +I +S H + K+ + K +LK+ + + + +G N+K+D + G Sbjct: 348 -----AYYIPVS-HFGAKNISKSLIDK----FLKQILQEKDYNIVGQNLKFDYEIFKSMG 397 Query: 481 IS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI-----DKI 533 S + F D M+ +Y+L+ ++ ++ K+L Y + ++P+ + Sbjct: 398 FSPNVPHF-DTMIAAYLLNPDEKRFNLEELSLKYLGYKMISFDELVNENVPLFGNDFSYV 456 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 + E++ E+++V +++ L K+ ++ ++ ++ P+IDV+S+ME+ G+ D++ Sbjct: 457 PLERAVEYSCEDADVTYRIFRKLGRKIYENEMEKLFYEIEMPLIDVLSEMELNGVYFDEE 516 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 LK++S + + + ++E +++++GE FNL+S Q+ ILF KL KT TG++ T Sbjct: 517 YLKELSKKYQEKMDGIKEKVFEIAGETFNLNSSTQVAYILFEKLNIAPYKKTATGKFSTN 576 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 A+ LE++ ++ I K +LE+R+ K+KSTY DS+P IN++T RVHT + T TGRL Sbjct: 577 AEVLEEL-SKEHEIAKLLLEYRKYQKLKSTYIDSIPLSINRKTNRVHTTFHQTGTSTGRL 635 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVF 771 +S PNLQN+P +++ G++IR+A + P + ++ ADYSQIELR+LAH++K L + F Sbjct: 636 SSSNPNLQNLPTRSEEGKEIRKA-VRPQRQDWWILGADYSQIELRVLAHVSKDENLLKAF 694 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ LDIH + AA+IFGV+ VS QMRR K +NF+IIYG+SP+ L+ ++ + SE Sbjct: 695 KDDLDIHTITAAKIFGVSEMFVSEQMRRVGKMVNFAIIYGVSPYGLSKRIGLSVSETKKI 754 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I YF + G+ EY+++ K+ R+ GYV T+FGRR + ++ S + ER A+N P Sbjct: 755 IDNYFRYYKGVFEYLKRMKDEARKKGYVTTLFGRRRYIPQLRSKNGNRVQEGERIAVNTP 814 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI + AMI++H L+ L++KM+LQ+HDELVFEVP+ E+ I+ ME A Sbjct: 815 IQGTAADIIKIAMINIHNRLKKENLSSKMILQVHDELVFEVPDNELEFVKDIVKDEMENA 874 Query: 952 CLPKINLRVPLKVNIKVSNNWQ 973 + L VPLKV++ W+ Sbjct: 875 ----VKLDVPLKVDVYCGKEWE 892 >gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] Length = 880 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 332/987 (33%), Positives = 524/987 (53%), Gaps = 126/987 (12%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDG+S YRAF+A PLLS G+ NA+ GF +L K+L++ + +H Sbjct: 1 MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAVYGFAMILMKMLEDEK----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+ + +YK R K P L Q+P +R A+ I E++ +EADDI Sbjct: 56 MLVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T AEK+GF V + S DKDL QL + T + T K E EHV +K+G+ P Sbjct: 116 IGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E+++ ++ L GDS DNIPG+PG+G KTA LL+++ ++E +L + Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSVEKLLES---------------- 219 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 +++ +G +L L+ + L+++ T DA Sbjct: 220 ---------------------------IDEVSGKKLKEKLEEFKDQALMSKELATIMTDA 252 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 P+ + ++ E +G E I K F++L ++ + +SE+ Q LE + Sbjct: 253 ----PIEVSVSGLEYQGFNREQVI---AIFKDLGFNTLLERLGE-DSEEAEQDQALEEI- 303 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 K+ D+ + + S S ++ D +H +P+ + S +++ Sbjct: 304 -------------KVETVTDVTSGI-----LVSPSAFVVEQIGDNYHEEPL-LGFSIVNE 344 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDK 473 TG + K+I K++ EN+ K + K Sbjct: 345 -----------------------TGSYFIPKDIAVESEVFKEWAENDEQKKWLFDSKRAV 381 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528 + L GI ++G E D +L +Y+++ G S D+AS+A+ + +S K K ++ Sbjct: 382 VALRWQGIELKGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAV 441 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 P S+ + EH + + I L L +L L ++E L+ P+ ++ +ME TG+ Sbjct: 442 P----SEDVLSEHLVRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGV 497 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ++D D LK++ E+ L EE I++++GE FN++SPKQLG ILF K+ P KTKTG Sbjct: 498 KVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTG 557 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T+A LE++ + I+ IL++RQ+ K++STY + L + +VHT ++ A T Sbjct: 558 -YSTSADVLEKL-ADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALT 615 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKIT 765 TGRL+S +PNLQNIPI+ + G+KIR+AF+ P++K + +ADYSQIELR+LAHI+K Sbjct: 616 QTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEKDWLIFAADYSQIELRVLAHISKDQ 673 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L + F N +DIH A ++F V ++V+ MRR AK +NF I+YGIS + L+ L I R Sbjct: 674 NLIEAFTNDMDIHTKTAMDVFHVAEDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITR 733 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA +I +Y F G+ Y+E + +Q GYV T+ RR + E+ S +IR+ ER Sbjct: 734 KEAGAFIDQYLESFQGVKAYMEDSVQDAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAER 793 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 A+N PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+FE P+EEI +++ Sbjct: 794 TAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPQEEIEILEKLVP 853 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972 ME A + L VPLKV+ +W Sbjct: 854 EVMEHA----LALDVPLKVDFASGPSW 876 >gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] Length = 944 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 351/997 (35%), Positives = 537/997 (53%), Gaps = 105/997 (10%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSR----KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 K+ LFL+DG + +YR+FYA L R +G+P AI GF + L K+ + R + Sbjct: 26 KKPALFLLDGMAIVYRSFYA---LQRTGMTSQEGMPTGAIYGFASTLLKIFETYRPQ--- 79 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 + A +FD TFR+++YP YKANR PE L+ QL + +AF IP I+ G+EAD Sbjct: 80 -YLAAVFDSKEKTFRHDLYPLYKANRQAPPEDLIMQLDAIFKLLEAFDIPLIKTPGYEAD 138 Query: 119 DIIAT----YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIK 170 D+I T ++ + + V I++ DKDL QLV + K E + + +I+ Sbjct: 139 DLIGTASRKFSPMCQ-----VYIVTPDKDLAQLVHEGVNILKPGKNQNELELLGKKEIIE 193 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 ++G+PPE + LTGD+ DNIPG GIG KTA LL +YG+L+NI + I K R Sbjct: 194 QFGVPPELFIPFLTLTGDTSDNIPGAKGIGPKTAISLLDQYGSLQNIYNHLDTI-SPKNR 252 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 +++ + T L +LV +RTD+ I + L+ L C P Sbjct: 253 QSLEAFQPTLDLITQLVTIRTDLQIDVTLKELA---CGLP-------------------- 289 Query: 291 TYDCDAANIEPVV--LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348 D A + P++ L + T ++ +A+ E+ + S + L ++ S E+ P Sbjct: 290 ----DPAKLFPLLQKLGLKTISSRILALFGELQQ----APSATAPLHEEPSSPFHEEEPA 341 Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408 + P N Y +I + + ++ L DA H Sbjct: 342 ----------LRSPRENADYARIDTVDKLMELMESLH--------------DARH----- 372 Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQD---STGKNTLTKE-ILSYLKKFFENEHFLK 464 IA+ T DT F+ E I ++V T + S ++ L ++ + LK EN K Sbjct: 373 IAVDTETTSLDT-FEAELAGISIAVETGKARFISFAQSALDRDKTVEILKPLLENPSLPK 431 Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEI 520 IG N+KYD LVL +YGI + D ML SYVL+ H++ +A L Y T E+ Sbjct: 432 IGQNLKYDMLVLKKYGIELSPVAFDTMLASYVLNP-EEKHNLDDLAAHHLGYRTTTFDEL 490 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDV 579 + + K+ I ++ ++ ++A +++++ LQL + R KL E +LL + E ++ P++ V Sbjct: 491 VGTGKTKQHIFEVDPEKLSDYACQDADLALQLEGVFRKKLDGETELLWLCENIEFPLVTV 550 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 +++ME GI ID L++ S + K L L E IY +G FN+ SPKQL ILF L Sbjct: 551 LAEMEYAGICIDTHHLEKASERVKKELELLTETIYAAAGSAFNIDSPKQLAHILFDLLAL 610 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 P +TKTG + T + LE++ PI +++LE+R L K+KSTY D+LP +N T R+ Sbjct: 611 PPKKRTKTG-YSTNVEVLEEL-ATLFPIARDLLEYRSLQKLKSTYIDALPKMVNPLTGRL 668 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRIL 758 HT ++ T TGRL+S PNLQNIPI++ LG++IRRAFI S P L+SADYSQIELRI Sbjct: 669 HTTFNQFITATGRLSSSNPNLQNIPIRSPLGKEIRRAFIPSTPENWLLSADYSQIELRIA 728 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 A I+ L + F N DIH A IF + ++++ MRR AK +NF ++YGI PF L+ Sbjct: 729 AEISGDPQLLEAFRNREDIHTATAKVIF--DTDEITSDMRRKAKEVNFGVLYGIMPFGLS 786 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 +L IP+ EA I Y ++PG+ + +++ R+ GYV TI GRR + ++NS ++ Sbjct: 787 RRLNIPQKEAKAIIDTYISKYPGLFKALQEIIVTGREKGYVTTILGRRRYLADLNSRNTN 846 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 ++ ERAA+N PIQG+AADI + AM + + + MLLQ+HDEL+FE + E Sbjct: 847 LKKAAERAAMNTPIQGTAADIIKCAMNLCSSRMRHLNMKSVMLLQVHDELLFETTDAEKE 906 Query: 939 TASQIIVHSMEKACLPKINLR-VPLKVNIKVSNNWQE 974 S+++ +M A + + L+ VP+ V+ + NW E Sbjct: 907 PLSKLVEQAMIDAAI-RCGLKNVPVLVDTGIGKNWLE 942 >gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 885 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 343/981 (34%), Positives = 531/981 (54%), Gaps = 110/981 (11%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N ++DGSS +RAFYA PLL K G+ NAI GF ML +N+ + SH V Sbjct: 3 KNIFLIIDGSSLFFRAFYALPLLKTKR-GIYTNAIYGFVMML----ENAIERVKPSHIVV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E+Y DYK R K P L Q PLVR + I ++ +EADDI T Sbjct: 58 CFDRKGKTFRSELYKDYKGTRQKTPNELEQQFPLVRDILKYMNIVVLDSPVYEADDIAGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 + IA KEG+ +++ DKD QLV T + T K E ++++ + +GI P++ Sbjct: 118 LSLIASKEGYKSYLLTGDKDYYQLVDDNTNVLMTRKGITELEVVNLQSINDDYGISPQEF 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+ L GDS DNIPG+PGIG KT L++EY +EN+ + S I KK +EN+ E Sbjct: 178 IDLKGLMGDSSDNIPGVPGIGPKTGLKLIKEYSTIENLYNHLSEISGKKLKENLEENKVQ 237 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A +S+KL I+ + + P +S LK E+ D N+ Sbjct: 238 AFMSKKL--------------GTIVRNIDLPVGLSDLKIKEY-------------DYENL 270 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 + D +F+S+ ++ P+K E+ ++++ Sbjct: 271 SKLYRDF-----------------------EFNSIL--------KRLPEKYQKEKTEEIA 299 Query: 360 Q--YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + I+NDS I ++ ++ S +FK I+D P IAI L + Sbjct: 300 DTFFQISNDS---------IDDIIENIKASKSFAFKFISDGKIYEGIDPFKIAI--LPKG 348 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 +TS ID + K+ LS LK +E++ K+G+++K D +VL Sbjct: 349 YNTSV------IDYN--------------KDNLSNLKALWEDDSIEKLGYDLKEDIIVLQ 388 Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKI 533 I ++ + D M+ Y+L+S S+++I +A + + K E+L +I Sbjct: 389 YNKIDLKNYCHDSMIAEYLLNSTESNYEIDHLASSYFNKAYKSEEELLGKGVKKKKFQEI 448 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 + + + N++ ++ L K+ E + +Y ++ P+I+V++ MEI GI+ D + Sbjct: 449 DEGDLNSYFSYILNMVYKISPLQMQKIEAEGMKDLYINVELPLIEVLANMEIVGIRTDVN 508 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 +L ++ +I + + LE NIY + E+FN++SPKQLG ILF K+ P KTKTG + T+ Sbjct: 509 ILNEIDEKIKERINDLEFNIYKDADEQFNINSPKQLGQILFEKMDLPVIKKTKTG-YSTS 567 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 A LE++ G + II NILE+R++SKIK+TY D L + INK+T R+H+ ++ T TGR+ Sbjct: 568 ADVLEKLR-GKSLIIDNILEYRKISKIKNTYIDGLRDVINKKTGRIHSRFNQTVTSTGRI 626 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S EPNLQNIPIKT G+ IR+A +S L+ +DYSQIELR+LA ++ T + F + Sbjct: 627 SSTEPNLQNIPIKTHEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFAD 686 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 LDIHR A+E+F ++VS ++R AK +NF I+YGIS + L+ L IPR EA YI Sbjct: 687 GLDIHRKTASEVFHTPYDEVSDELRSMAKAVNFGIVYGISDYGLSQNLNIPRKEAKTYID 746 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 Y F GI +Y+ + + GYVET+ RR + E+ + +IR+ ER A+N PIQ Sbjct: 747 NYLGHFQGIKKYMNDIIHVGTEKGYVETLLHRRRYIPELKAKNFNIRSFGERIALNTPIQ 806 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI + AM+ V+K L+ L K++LQIHDELV + P+EE+ +I+ M+ A + Sbjct: 807 GTAADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEEVAEVCEIMKDVMDNALI 866 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 ++VPL V++K + E Sbjct: 867 ----MKVPLSVSMKTGKSLYE 883 >gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis] Length = 880 Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust. Identities = 338/987 (34%), Positives = 525/987 (53%), Gaps = 126/987 (12%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDG+S YRAF+A PLLS G+ NA+ GF +L K+L++ + +H Sbjct: 1 MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAVYGFAMILMKMLEDEK----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+ + +YK R K P L Q+P +R A+ I E++ +EADDI Sbjct: 56 MLVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T AEK+GF V + S DKDL QL + T + T K E EHV +K+G+ P Sbjct: 116 IGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E+++ ++ L GDS DNIPG+PG+G KTA LL+++ ++E + Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSVEKL------------------- 216 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 P +I ++ +G +L L+ + L+++ T DA Sbjct: 217 -----------------PESI-------DEVSGKKLKEKLEEFKDQALMSKELATIMTDA 252 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 P+ + ++ E +G E I K F++L ++ + ++E E+ Q Sbjct: 253 ----PIEVSVSGLEYQGFNREQVI---AIFKDLGFNTLLERLGEDSAEA-------EQDQ 298 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 L IN + T + T DI + S S ++ D +H +PI + S +++ Sbjct: 299 SLED--INVKTVTDV--TSDI---------LVSPSAFVVEQIGDNYHEEPI-LGFSIVNE 344 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDK 473 TG + K+I K++ EN+ K + K Sbjct: 345 -----------------------TGAYFIPKDIAVESEVFKEWVENDEQKKWVFDSKRAV 381 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528 + L GI ++G E D +L +Y+++ G S D+AS+A+ + +S K K ++ Sbjct: 382 VALRWQGIELKGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAV 441 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 P S+ + EH + I L L +L L ++E L+ P+ ++ +ME TG+ Sbjct: 442 P----SEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGV 497 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ++D D LK++ E+ L EE I++++GE FN++SPKQLG ILF K+ P KTKTG Sbjct: 498 KVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTG 557 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T+A LE++ + I+ IL++RQ+ K++STY + L + +VHT ++ A T Sbjct: 558 -YSTSADVLEKL-ADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALT 615 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKIT 765 TGRL+S +PNLQNIPI+ + G+KIR+AF+ P++K + +ADYSQIELR+LAHI+K Sbjct: 616 QTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEKDWLIFAADYSQIELRVLAHISKDE 673 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L + F N +DIH A ++F V ++V+ MRR AK +NF I+YGIS + L+ L I R Sbjct: 674 NLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITR 733 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA +I RY F G+ Y+E + +Q GYV T+ RR + E+ S +IR+ ER Sbjct: 734 KEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAER 793 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 A+N PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+FE P+EEI +++ Sbjct: 794 TAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVP 853 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972 ME A + L VPLKV+ +W Sbjct: 854 EVMEHA----LALDVPLKVDFASGPSW 876 >gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642] gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY] gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis] gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] Length = 880 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 338/987 (34%), Positives = 525/987 (53%), Gaps = 126/987 (12%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDG+S YRAF+A PLLS G+ NA+ GF +L K+L++ + +H Sbjct: 1 MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAVYGFAMILMKMLEDEK----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+ + +YK R K P L Q+P +R A+ I E++ +EADDI Sbjct: 56 MLVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T AEK+GF V + S DKDL QL + T + T K E EHV +K+G+ P Sbjct: 116 IGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E+++ ++ L GDS DNIPG+PG+G KTA LL+++ ++ E +LE Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSV----------------EKLLES 219 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 +++ +G +L L+ + L+++ T DA Sbjct: 220 ---------------------------IDEVSGKKLKEKLEEFKDQALMSKELATIMTDA 252 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 P+ + ++ E +G E I K F++L ++ + ++E E+ Q Sbjct: 253 ----PIEVSVSGLEYQGFNREQVI---AIFKDLGFNTLLERLGEDSAEA-------EQDQ 298 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 L IN + T + T DI + S S ++ D +H +PI + S +++ Sbjct: 299 SLED--INVKTVTDV--TSDI---------LVSPSAFVVEQIGDNYHEEPI-LGFSIVNE 344 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDK 473 TG + K+I K++ EN+ K + K Sbjct: 345 -----------------------TGAYFIPKDIAVESEVFKEWVENDEQKKWVFDSKRAV 381 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528 + L GI ++G E D +L +Y+++ G S D+AS+A+ + +S K K ++ Sbjct: 382 VALRWQGIELKGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAV 441 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 P S+ + EH + I L L +L L ++E L+ P+ ++ +ME TG+ Sbjct: 442 P----SEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGV 497 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ++D D LK++ E+ L EE I++++GE FN++SPKQLG ILF K+ P KTKTG Sbjct: 498 KVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTG 557 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T+A LE++ + I+ IL++RQ+ K++STY + L + +VHT ++ A T Sbjct: 558 -YSTSADVLEKL-ADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALT 615 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKIT 765 TGRL+S +PNLQNIPI+ + G+KIR+AF+ P++K + +ADYSQIELR+LAHI+K Sbjct: 616 QTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEKDWLIFAADYSQIELRVLAHISKDE 673 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L + F N +DIH A ++F V ++V+ MRR AK +NF I+YGIS + L+ L I R Sbjct: 674 NLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITR 733 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA +I RY F G+ Y+E + +Q GYV T+ RR + E+ S +IR+ ER Sbjct: 734 KEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAER 793 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 A+N PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+FE P+EEI +++ Sbjct: 794 TAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVP 853 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972 ME A + L VPLKV+ +W Sbjct: 854 EVMEHA----LALDVPLKVDFASGPSW 876 >gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] Length = 939 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 325/987 (32%), Positives = 523/987 (52%), Gaps = 72/987 (7%) Query: 5 NHLFLV-DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 N +F+V DGSS ++RAFYA PL+S G+ NA+ GF ML +L R+E AV Sbjct: 3 NAVFMVIDGSSLLHRAFYALPLMSTSQ-GVHTNAVYGFLTMLERL----RREYQPDFLAV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 D +T R + Y YKA R PE L PQ L++ A+ IP E +G+EADD+I Sbjct: 58 CLDKSRITHRTQRYEAYKAQRGATPEELRPQFGLLKEVLAAWRIPLFEEEGYEADDLIGA 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 +A+K+G I++ D+D QL+SP + T K E+ D E + K G+ P ++ Sbjct: 118 LVCLAKKQGIDSLIVTGDRDAWQLISPGVEVLFTRKGISELERYDEEALKAKIGLTPRQV 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 V + L GD DNIPG+PG+G K A LL+++G+++++ +K K +E + + E Sbjct: 178 VDWKGLMGDPSDNIPGVPGVGEKRAFKLLEQFGDMDSLYERLDEVK-GKLKEKLATHREQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LSR+L ++ ++P+ E + P L K LEF L+ + D A Sbjct: 237 AFLSRELATIQCNIPLEPDWEACRAASPDFPALRRLYKKLEFRSLLRHLPGDEGDDEAEG 296 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS--DQTSKINSEQTPQKLFLERLQK 357 + + + ++ + D T S + D+ + + Q + ++ Sbjct: 297 GSL---FARQDEQAVSAVDPMGADGTAGGGVRCSAAEGDKPGDGQAVRPDQAVRID---- 349 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 + P+ + YT + + I + +L IG A T + A+ P Sbjct: 350 -VEAPLTVE-YTAVEDGNAIGAMLTELMQIG-AEPGCRTAVLAAWEGSP----------- 395 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTK--------EILSYLKKFFENEHFLKIGHNI 469 + K++ I + + G++ L + + K F+ ++ K+ + Sbjct: 396 --RTGKLKQIVL---------AAGRDALLRLWVIDRPGAFFAATKPFWASKDHRKLFFDA 444 Query: 470 KYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528 K L+ R + G + D +L +Y+LD + + +A A W+ + K ++ +S + Sbjct: 445 KSLWLLARREDTVIEGIDGDGLLGAYLLDPLANRYSLARSAHDWIGW--KVDTEAGRSVL 502 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 P E + + + ++ +L E L +Y ++ P+ ++ ME TGI Sbjct: 503 P---------PEEGARAAAALFHMTPVMEARLGEEGLCALYRDVELPLAPILGAMEWTGI 553 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +++ +L++++ E+ ++ L+ +IYDL+GE FN++S +Q G ILF KL P +TKTG Sbjct: 554 KVNPAVLQEMAGELGADIRRLQADIYDLAGESFNINSTQQFGKILFEKLGLPVIKRTKTG 613 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T + LE++ +PI+ +LE+RQL K+KSTY + L I+ R+HT ++ A T Sbjct: 614 -YSTDVEVLEEL-ADRHPIVPKVLEYRQLMKLKSTYVEGLLPLIDGEDGRIHTSFNQAVT 671 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPL 767 TGRL+S EPNLQNIP++ + G++IR+AF +P L++ADYSQIELRILAH++ Sbjct: 672 ATGRLSSTEPNLQNIPVRLEQGRRIRKAFTAPGDDWTLLAADYSQIELRILAHLSGDPSF 731 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F + DIH A+E+FGV +E V+ +MRR AK +NF I+YGIS F L+ L + R+E Sbjct: 732 KDAFAKNQDIHTRTASEVFGVPMENVTSEMRRRAKAVNFGIVYGISDFGLSRDLGVLRAE 791 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A YI YF R+ G+ YI++ R+ GYV T+ GRR ++ +N ERAA Sbjct: 792 ARQYIDGYFDRYSGVKGYIDEIIAEARRQGYVTTLLGRRRRLPDLFVKNKIRQNFGERAA 851 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +N PIQG+AADI + AM+ + L L T+MLLQ+HDEL+FE P+EE++ A+ +I + Sbjct: 852 MNTPIQGTAADIIKAAMVRIPGLLAAKGLKTRMLLQVHDELIFEAPKEELSEAAALIRET 911 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME+ I L VPL V++K NW E Sbjct: 912 MEQT----IRLDVPLTVDVKTGPNWYE 934 >gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5] gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5] Length = 880 Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust. Identities = 338/987 (34%), Positives = 525/987 (53%), Gaps = 126/987 (12%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDG+S YRAF+A PLLS G+ NA+ GF +L K+L++ + +H Sbjct: 1 MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAVYGFAMILMKMLEDEK----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+ + +YK R K P L Q+P +R A+ I E++ +EADDI Sbjct: 56 MLVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T AEK+GF V + S DKDL QL + T + T K E EHV +K+G+ P Sbjct: 116 IGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E+++ ++ L GDS DNIPG+PG+G KTA LL+++ ++ E +LE Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSV----------------EKLLES 219 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 +++ +G +L L+ + L+++ T DA Sbjct: 220 ---------------------------IDEVSGKKLKEKLEEFKDQALMSKELATIMTDA 252 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 P+ + ++ E +G E I K F++L ++ + ++E E+ Q Sbjct: 253 ----PIEVSVSGLEYQGFNREQVI---AIFKDLGFNTLLERLGEGSAEA-------EQDQ 298 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 L IN + T + T DI + S S ++ D +H +PI + S +++ Sbjct: 299 SLED--INVKTVTDV--TSDI---------LVSPSAFVVEQIGDNYHEEPI-LGFSIVNE 344 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDK 473 TG + K+I K++ EN+ K + K Sbjct: 345 -----------------------TGAYFIPKDIAVESEVFKEWVENDDQKKWVFDSKRAV 381 Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528 + L GI ++G E D +L +Y+++ G S D+AS+A+ + +S K K ++ Sbjct: 382 VALRWQGIELKGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAV 441 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 P S+ + EH + I L L +L L ++E L+ P+ ++ +ME TG+ Sbjct: 442 P----SEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGV 497 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ++D D LK++ E+ L EE I++++GE FN++SPKQLG ILF K+ P KTKTG Sbjct: 498 KVDVDRLKRMGEELGTKLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTG 557 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T+A LE++ + I+ IL++RQ+ K++STY + L + +VHT ++ A T Sbjct: 558 -YSTSADVLEKL-ADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALT 615 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKIT 765 TGRL+S +PNLQNIPI+ + G+KIR+AF+ P++K + +ADYSQIELR+LAHI+K Sbjct: 616 QTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEKDWLIFAADYSQIELRVLAHISKDE 673 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L + F N +DIH A ++F V ++V+ MRR AK +NF I+YGIS + L+ L I R Sbjct: 674 NLIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITR 733 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA +I RY F G+ Y+E + +Q GYV T+ RR + E+ S +IR+ ER Sbjct: 734 KEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAER 793 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 A+N PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+FE P+EEI +++ Sbjct: 794 TAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVP 853 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972 ME A + L VPLKV+ +W Sbjct: 854 EVMEHA----LALDVPLKVDFASGPSW 876 >gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245] gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245] Length = 943 Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust. Identities = 341/989 (34%), Positives = 520/989 (52%), Gaps = 89/989 (8%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 Q++ LFL+DG + +YR++YA K DG+P AI GF + L K+ + E + Sbjct: 26 QQKPGLFLIDGMALVYRSYYALQQAGMKTRDGIPTGAIHGFASALLKIFEVWHPE----Y 81 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV FD TFR+ +Y YKANRP PE L+ Q+ + AF IP I++ G+EADD+ Sbjct: 82 LAVTFDSREKTFRHNLYEPYKANRPAPPEDLVRQIEAILELIDAFSIPLIKLPGYEADDL 141 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I + EK+ ++ I++ DKDL QLV + K+ E ++ ++G+ P Sbjct: 142 IGSAVKRFEKQ-CSIYIVTPDKDLAQLVHEGVIMLKPSKKQNELEPFGPAEIMAQFGVEP 200 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E+ + L LTGD+ DNIPG GIG KTAA LL +YG L+NI N + K R ++ + Sbjct: 201 ERFIDLLTLTGDTSDNIPGAKGIGPKTAAALLLKYGTLDNIYRNIGELTPKTR-ASLEAF 259 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKLINRVATTYD 293 L R+LV + +D+ + + LE L C P R++ FL E + R+ + + Sbjct: 260 QPQLDLIRQLVTIHSDIDLGLNLETLA---CKAPVQGRIMPFLGKYELKAVAVRLPSVF- 315 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 P +L + G E E D S Sbjct: 316 -------PGML------SNGTPAEEERDEQENNNAPSLDS-------------------- 342 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 P+ Y I + +++ V++LE S + T ++D F ++ I+ S Sbjct: 343 --------PLTGADYAIIDTPEGVEKLVRQLEQADSFAIDTETTSLDTFQAELAGISFS- 393 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYD 472 L K E FI GK L L LK EN K G N+KYD Sbjct: 394 LKPK-------EARFIYF---------GKGGLDIGNTLERLKPVLENPDIRKTGQNLKYD 437 Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSR-KSS 527 LVL YGIS+ D ML SYVLD H++ +A + LS T E+ K Sbjct: 438 LLVLKNYGISLTPVAFDTMLASYVLDP-EEKHNLDDLAARHLSIRTTTFDELTAGEGKKR 496 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEIT 586 I + +Q+ ++ +++++ L+L + KL+ ++LLH+ ++ P+++V++ ME Sbjct: 497 THILDVPSAQLSDYGCQDADIALRLQEVFEAKLLEDQRLLHLCRTIEFPLVEVLAGMEYQ 556 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 GI ID L++ + ++ + L I+ +G FNL SPKQL ILF L P+ TK Sbjct: 557 GISIDTAHLEKTADLVNAQIGDLSRKIHAAAGTPFNLDSPKQLSGILFNTLGLPTKKTTK 616 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 TG + T + LE++ +PII ++LE+R L K+K+TY D+LP IN T R+HT ++ Sbjct: 617 TG-FSTNVEVLEEL-APLHPIIGDLLEYRSLQKLKTTYIDALPKMINPGTGRLHTSFNQH 674 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKIT 765 T TGRL+S PNLQNIP++T G++IRRAFI S P ++SADYSQIELRI A I+ Sbjct: 675 VTATGRLSSSNPNLQNIPVRTTAGKEIRRAFIPSNPDNLILSADYSQIELRIAAEISGDE 734 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L + F N DIHR A IF + ++++ MRR AK +NF ++YGI P+ L+ +L IP+ Sbjct: 735 KLIEAFRNREDIHRATAKVIF--STDEITSDMRRKAKEVNFGVLYGIQPYGLSKRLNIPQ 792 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 SEA I+ Y ++PG+ + + ++ GYV T+ GRR + ++NS +I+ R Sbjct: 793 SEAKAIIETYTTKYPGLFHALLEIIEEGKRKGYVTTLLGRRRYIPDLNSRNGNIQKAAGR 852 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AA+N PIQG+AADI + AM + ++ + + + MLLQ+HDEL+FE EE S+++ Sbjct: 853 AAMNTPIQGTAADIIKCAMNLCDRQIKKNNMNSVMLLQVHDELLFETTAEEKNRLSKLVE 912 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +M +A + +VP++V+ NW E Sbjct: 913 TAMIEAAVYCGLKKVPVEVDTGTGKNWLE 941 >gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402] Length = 944 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 349/999 (34%), Positives = 536/999 (53%), Gaps = 86/999 (8%) Query: 4 ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 ++ ++++D IYR+++A PL + K G ++AI GF +K L + E Sbjct: 2 KDTIYVLDAYGLIYRSYFAFISRPLTNSK--GENISAIFGF----FKSLHSIFTEYNPKL 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 F D TFR+E+Y +YKA R K P+ L Q+ + + F +PA+ GFEADD+ Sbjct: 56 FVTALDSLTPTFRHEMYKEYKATRDKTPDDLHAQIDKIEEILKTFKLPAVRCNGFEADDV 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK---EEKIDIEHVIKKWGIPPE 177 IA+ +AEKEG +IS DKDLMQLVS TT + K E D E+V ++WG+ P Sbjct: 116 IASIAALAEKEGRECVVISGDKDLMQLVSKTTTMLKPGKIKAWEGFDAENVKEEWGVYPA 175 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 M+ L +L GDS DN+PGI G+G KTA LL+EY L+ I N +K + I E Sbjct: 176 GMLDLLSLIGDSADNVPGIKGVGPKTAVKLLEEYKTLDGIYANTGNLKGA-LKTKIEEGK 234 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT-YDCDA 296 E+A S++L+ LR DVP+ K +N +T+ D +A Sbjct: 235 ESAYFSKELIRLRFDVPVE--------------------------KDLNAYSTSQMDYEA 268 Query: 297 AN---IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 A I + +I ++ I E ++ + +TS +L +T E + QK E Sbjct: 269 AARLFISEELPNIAKLYSEKIIAEKKLSKHEKDETSSKENLKQETGLF--ENSEQKTLPE 326 Query: 354 RL-QKLS-----QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 L Q+L P N Y + +++ + V + G A++ T + D +++ Sbjct: 327 MLPQELGTGEEISLPQNKGDYKLVDEAEELFKIVDEALKQGLAAYDCETTSEDPLNAEVC 386 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 +++ L + + F ++ +L + K K+ + K F+++ L I H Sbjct: 387 GFSLA-LKEGEAYYFPLKAPCPELG-----EEAPKLIAFKDAQRAVTKLFDSKMTL-IMH 439 Query: 468 NIKYD-------KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517 N K+D KL GIS F D M+ +++LD RSS+ + +A+ L Sbjct: 440 NGKFDIQAALSSKLA---SGISANLF-DTMIAAWLLDPARSSYGMDKLAESILGVKTIRF 495 Query: 518 KEILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K+++K+ + S IP++ + +A E++++ + + P L L ++ L+ P Sbjct: 496 KDLVKTGQNFSDIPLN-----EACPYAAEDADITFRFYKKFLPLLKKNNLEKLFFDLEMP 550 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + ++++MEI GI + + L S E+ K L E++IY L G +FN++SPKQL ++LF Sbjct: 551 ITKLLTEMEIKGIFLKGEELTAYSKELGKELEDCEKDIYRLVGHEFNIASPKQLQEVLFE 610 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 + K G KTKTG + T LE + ++P+ IL++R L+K+KSTY D+LP +K Sbjct: 611 ERKLTPGKKTKTG-YSTDTSVLENL-ASEDPVPAKILDYRALAKLKSTYTDTLPKMTDK- 667 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 R+HT + T TGRL+S +PNLQNIPI+ + G+KIR AF + + LISADYSQIEL Sbjct: 668 NGRIHTSFIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYSQIEL 727 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 ILAH++K L + F +D+H A+ IF V+I+ VS MRR AKTINF ++YG+S F Sbjct: 728 VILAHLSKDQNLVEAFNKGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINFGVMYGMSAF 787 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 RLA+ LRIPR A ++IK YF + G+ ++ + Q GYVET+ GRR + INS Sbjct: 788 RLASSLRIPRKRADEFIKAYFATYSGVSGFMAQVCQEAEQRGYVETLMGRRRYLPAINSK 847 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + ER A+N PIQG+AADI + AM+ V K+L+ KL +LLQ+HDEL+ E E Sbjct: 848 NKVEKAGAERIAVNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQVHDELIIEAAES 907 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E ++ ME I L VPL+V+I+ +W E Sbjct: 908 EREKVMSLVKEKMEGV----IKLSVPLRVSIESGMSWGE 942 >gi|319760727|ref|YP_004124665.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF] gi|318039441|gb|ADV33991.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF] Length = 950 Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust. Identities = 338/997 (33%), Positives = 530/997 (53%), Gaps = 80/997 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N + L+DGS +IYRA++A P L+ G PV I G NM+ LL R H + Sbjct: 6 DNPIILIDGSFYIYRAYHAYPPLTTS-TGYPVWVIYGVINMIRSLLIKYR----PIHMGI 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD P TFRN+++ YK+NRP++PE L Q+ + +A GI A+ + EADD+IAT Sbjct: 61 VFDSPGKTFRNDLFKQYKSNRPQMPEDLCIQITPLNTIIKAMGITALSVPYVEADDVIAT 120 Query: 124 YT-YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 + + A+ + V I + DKD+ Q+VS L +T+ +D + KK+G+ P + Sbjct: 121 LSNFYAQLKNKTVLISTGDKDMAQIVSSNIILINTMSNIILDSLEIKKKFGVSPNLIADY 180 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEY 236 AL GD DNIPG+PGIG K A +LL GNL+ + N +I + + +++ Sbjct: 181 LALIGDRSDNIPGVPGIGIKNAKILLNNIGNLQTLYQNLHKISILNLRNSQSIKNTLIKN 240 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCD 295 + A LS KL ++ DVP+ L++++ + +L K EF ++ + A T+ Sbjct: 241 KKLAFLSYKLATVKIDVPLNQSDYKLLIQNIDSQQLFLLFKKYEFNTWVSELQAGTWLKK 300 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 N + ++T+N ++ + I T + + S Sbjct: 301 YKNTKK-----SSTQNSQLSNTSLISNTITHTCNYYPSFPSSN----------------- 338 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 NND I N + W+++ T I ++ D F I I IST Sbjct: 339 --------NNDI---ISNISSLTNWIKQNNTHHCFILNIYSNNFDIFTPNIIGICISTY- 386 Query: 416 QKDDTSFKVETIFIDLSV-HTSQDSTGKNTLT-----KEILSYLKKFFENEHFLKIGHNI 469 T + +I +++ HT +T E+LS LK EN KIGHN+ Sbjct: 387 ----TMNSMHNAYIPINIQHTLNIDNNNDTYQWYLNLTEVLSILKPILENIKIKKIGHNM 442 Query: 470 KYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK-----------WLSYTR 517 K+ +L ++ I + G D++L YVL + +I K + Sbjct: 443 KFIFSLLKQHNIHLSGPIFDVILELYVLYGTSNYQNIKRFLNKTTILDHIFKFQQIYNNN 502 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 K ++K I ++ +Q+ +AI N + IL W ++ +L ++ ++ P+I Sbjct: 503 KYLIKKNIRDIQLESSCSTQL-IYAISNLHQIL--WTEIKQH---NELKKIFINIEIPLI 556 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 V+S++E G+ ID+ L S +++ L +L+ Y L+G FNL SPKQL +IL+ + Sbjct: 557 SVLSRIEDYGVLIDKKFLYSHSIKLNSQLNNLKTQAYQLTGSSFNLDSPKQLQEILYNQE 616 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 K P KT G T+ + L+++ + I K IL++R LSK+KSTY + L + INK++ Sbjct: 617 KLPIFKKTPHGAPSTSEEVLKKL-SKKHSIPKIILKYRSLSKLKSTYTNKLISMINKKSN 675 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 R+HT Y+ T TGRL+S PNLQNIP + G+KIR+AFI+P +ISADYSQIELRI Sbjct: 676 RIHTSYNQTRTSTGRLSSTNPNLQNIPNRNYDGRKIRQAFIAPENSLIISADYSQIELRI 735 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 +AH+++ L F DIH A+EIF ++ V+ + R+ AKT+NF +IYG++ F L Sbjct: 736 MAHLSRDLKLINDFLEEKDIHTTTASEIFVTSLHLVTGEQRQRAKTVNFGLIYGMTAFGL 795 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 + QL + EA Y+ RYF R+PG+ +Y++ K++ ++NGYV T+ GR+++ +I S Sbjct: 796 SKQLSVTCQEAQKYVDRYFQRYPGVMQYMQYIKDYAKKNGYVSTLDGRKLYLPDIYSSNI 855 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 S + ER+AINAP+QGSAADI +RAMIS+ L+ + M++Q+HDELVFEV + Sbjct: 856 SQKKGAERSAINAPMQGSAADIIKRAMISIDSWLQTDNIPVHMIMQVHDELVFEVNNTFV 915 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 A + I ME+ + L VPLKV+I V NW++ Sbjct: 916 DIAVKQIRKLMEECFI----LNVPLKVDIGVGKNWEQ 948 >gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195] Length = 880 Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust. Identities = 338/986 (34%), Positives = 525/986 (53%), Gaps = 124/986 (12%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDG+S YRAF+A PLLS G+ NA+ GF +L K+L++ + +H Sbjct: 1 MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAVYGFAMILMKMLEDEK----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+ + +YK R K P L Q+P +R A+ I E++ +EADDI Sbjct: 56 MLVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T AEK+GF V + S DKDL QL + T + T K E EHV +K+G+ P Sbjct: 116 IGTLAKSAEKDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLTP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E+++ ++ L GDS DNIPG+PG+G KTA LL+++ ++ E +LE Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSV----------------EKLLES 219 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 +++ +G +L L+ + L+++ T DA Sbjct: 220 ---------------------------IDEVSGKKLKEKLEEFKDQALMSKELATIMTDA 252 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 P+ + ++ E +G E I K F++L ++ + ++E E+ Q Sbjct: 253 ----PIEVSVSALEYQGFNREQVI---AIFKDLGFNTLLERLGEDSAEA-------EQDQ 298 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 L IN + T + T DI + S S ++ D +H +PI + S +++ Sbjct: 299 SLED--INVKTVTDV--TSDI---------LVSPSAFVVEQIGDNYHEEPI-LGFSIVNE 344 Query: 417 KDDTSFKVETIFI--DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 FI D +V + K++ EN+ K + K + Sbjct: 345 -------TGAYFIPKDTAVESE---------------VFKEWVENDDQKKWVFDSKRAVV 382 Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIP 529 L GI ++G E D +L +Y+++ G S D+AS+A+ + +S K K ++P Sbjct: 383 ALRWQGIELKGAEFDTLLAAYIINPGNSYDDVASVAKDYGLHIVSSDESVYGKGAKRAVP 442 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 S+ + EH + I L L +L L ++E L+ P+ ++ +ME TG++ Sbjct: 443 ----SEDVLSEHLGRKALAIQSLREKLVQELENNDQLELFEELEMPLALILGEMESTGVK 498 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 +D D LK++ E+ L EE I++++GE FN++SPKQLG ILF K+ P KTKTG Sbjct: 499 VDVDRLKRMGEELGAKLKEYEEKIHEIAGEPFNINSPKQLGVILFEKIGLPVVKKTKTG- 557 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T+A LE++ + I+ IL++RQ+ K++STY + L + +VHT ++ A T Sbjct: 558 YSTSADVLEKL-ADKHDIVDYILQYRQIGKLQSTYIEGLLKVTRPDSHKVHTRFNQALTQ 616 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITP 766 TGRL+S +PNLQNIPI+ + G+KIR+AF+ P++K + +ADYSQIELR+LAHI+K Sbjct: 617 TGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEKDWLIFAADYSQIELRVLAHISKDEN 674 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F N +DIH A ++F V ++V+ MRR AK +NF I+YGIS + L+ L I R Sbjct: 675 LIEAFTNDMDIHTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRK 734 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA +I RY F G+ Y+E + +Q GYV T+ RR + E+ S +IR+ ER Sbjct: 735 EAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERT 794 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 A+N PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+FE P+EEI +++ Sbjct: 795 AMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPE 854 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972 ME A + L VPLKV+ +W Sbjct: 855 VMEHA----LALDVPLKVDFASGPSW 876 >gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405] gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405] Length = 936 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 348/992 (35%), Positives = 530/992 (53%), Gaps = 80/992 (8%) Query: 4 ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 ++ ++++D IYR+++A PL + K G V+AI GF +K L + E Sbjct: 2 KDTIYVLDAYGLIYRSYFAFISRPLTNSK--GENVSAIFGF----FKSLHSIFTEYNPKL 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 F D TFR+E+Y +YKA R K P+ L Q+ + + F +P + GFEADD+ Sbjct: 56 FVTALDSLTPTFRHEMYKEYKATRDKTPDDLHAQIDKIEEILKTFKLPTVRCNGFEADDV 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK---EEKIDIEHVIKKWGIPPE 177 IA+ +AEKEG +IS DKDLMQLVS TT + K E D E+V ++WG+ P+ Sbjct: 116 IASIAALAEKEGRECVVISGDKDLMQLVSKTTTMLKPGKIKAWEGFDAENVKEEWGVYPD 175 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 M+ L +L GDS DN+PGI G+G KTA LL+EY +L+ I N +K + I E Sbjct: 176 GMLDLLSLIGDSADNVPGIKGVGPKTAVKLLEEYKSLDGIYANTGNLKGA-LKTKIEEGK 234 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCN---GPRLISFLKALEFTKLINRVATTYDC 294 E+A S++L+ LR DVP+ L + RL ++ + +A Y Sbjct: 235 ESAYFSKELIRLRFDVPVEKDLNAYSTSQMDYEAAARLF-------ISEELPNIAKLYS- 286 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 E ++ + N +K + +T F + S+QTS E PQ+L Sbjct: 287 -----EKIIAEKNAPSSK---------ENLKQETGLFEN-SEQTS---PEMLPQELGTGE 328 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 L P N Y + +++ + V + G AS+ T + D +++ +++ L Sbjct: 329 EISL---PQNKGDYKLVDEAEELFKIVDEALKQGLASYDCETTSEDPLNAEVCGFSLA-L 384 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-- 472 + + F ++ +L + K K+ + K F+++ L I HN K+D Sbjct: 385 KEGEAYYFPLKAPCPELG-----EEAPKLIAFKDAKKAVTKLFDSKMTL-IMHNGKFDIQ 438 Query: 473 -----KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR 524 KL GIS F D M+ +++LD RSS+ + +A+ L K+++K Sbjct: 439 AALSSKLA---SGISANLF-DTMIAAWLLDPARSSYGMDKLAESILGVKTIRFKDLVKQG 494 Query: 525 K--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + S IP+ + +A E++++ + + P L L ++ L+ P+ ++++ Sbjct: 495 QNFSDIPL-----KEACPYAAEDADITFRFYKKFLPLLKKNNLEKLFFDLEMPITKLLTE 549 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 MEI GI + + L S E+ K L E++IY L G +FN++SPKQL ++LF + K G Sbjct: 550 MEIKGIFLKGEELTAYSKELGKELEDCEKDIYRLVGHEFNIASPKQLQEVLFEERKLTPG 609 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T LE + ++P+ IL++R L+K+KSTY D+LP +K R+HT Sbjct: 610 KKTKTG-YSTDTSVLENL-ASEDPVPAKILDYRALAKLKSTYTDTLPKMTDK-NGRIHTS 666 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 + T TGRL+S +PNLQNIPI+ + G+KIR AF + + LISADYSQIEL ILAH++ Sbjct: 667 FIQTGTATGRLSSRDPNLQNIPIRGNEGRKIREAFQAEKGRVLISADYSQIELVILAHLS 726 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 K L + F +D+H A+ IF V+I+ VS MRR AKTINF ++YG+S FRLA+ LR Sbjct: 727 KDQNLVEAFNTGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINFGVMYGMSAFRLASSLR 786 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IPR A ++IK YF + G+ ++ Q GYVET+ GRR + INS + Sbjct: 787 IPRKRADEFIKAYFATYSGVSGFMANVCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAG 846 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER A+N PIQG+AADI + AM+ V K+L+ KL +LLQ+HDEL+ E E E Sbjct: 847 AERIAVNTPIQGTAADIVKLAMLEVDKALKKQKLDASILLQVHDELIIEAAESEREKVMS 906 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ ME I L VPL+V+I+ +W E Sbjct: 907 LVKEKMEGV----IKLSVPLRVSIESGMSWGE 934 >gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12] gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12] Length = 934 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 336/978 (34%), Positives = 526/978 (53%), Gaps = 82/978 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R +G P A+ G ML +L + + A +FD Sbjct: 25 LLLVDGSSYLYRAFHAMPDL-RGPEGQPTGALYGMVAMLRRLREQYPVAKGYRYAACVFD 83 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFRN +Y YKA RP +P L+ Q+ + A + G P +E+ G EADD+I T Sbjct: 84 AKGPTFRNAMYDQYKAQRPPMPPDLVAQIEPIHQAVRLMGWPLLEVPGVEADDVIGTLAV 143 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A +G + + DKD+ QLV+ L +T+ E +D V +K+G+PP+++V L Sbjct: 144 RAHAQGIRTLVSTGDKDMAQLVNDHITLVNTMSNEVLDPAGVQQKFGVPPDRIVDYLTLV 203 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYAETARLSR 244 GD++DN+PG+ +G KTA L EYG+L+ ++ A + K L++ TAR Sbjct: 204 GDAVDNVPGVDKVGPKTAVKWLTEYGSLDALIEQAETVSGAAGKNLRAALDWLPTAR--- 260 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 KLV + TD C+ ++ A +D D + P Sbjct: 261 KLVTIHTD--------------CD----------------LDGYAKAFDPD---LRPAPE 287 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 D + T+ +FS+ + ++ SEQ +++ L L P Sbjct: 288 DAQAL----------LPFFTSNGMRRFSA--EMKAQTVSEQAARQVSL-----LDGAPAA 330 Query: 365 NDS----YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 S Y +++ W+ +++ + TD++D ++ + I++S Sbjct: 331 EKSAPGTYETVLDCDRFDAWLTRIDAAELTAIDTETDSLDPMRARLVGISLSVAPG---- 386 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 E ++ L+ H + + + E+L L+ + EN K+G N KYD+ V G Sbjct: 387 ----EAAYLPLA-HAYPGAPEQLPMA-EVLERLRPWLENADKPKLGQNAKYDRHVFANAG 440 Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL----SYTRKEILKSRKSSIPIDKISD 535 +++RG+ D +L SYV+++ + H + S+ + L + + +++ +I D+++ Sbjct: 441 VTIRGYAHDTLLESYVIEAHKP-HSLDSLVSRHLGRDDTLSYEQVCGKGTKAITFDQVAL 499 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 ++ E++++ LQ+ L P++ + L L+ + +V+ ++E TG+ +D DLL Sbjct: 500 DVATRYSGEDADLTLQVHQRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLL 559 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 + S E+ + +LE ++L+G FNL SPKQ+G+ILF +L+ P KT +G T + Sbjct: 560 RAQSGELGAKMQTLEAQAFELAGGAFNLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEE 619 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ D P+ + IL+ R LSK+KSTY + LP IN T RVHT Y+ A +TGRLAS Sbjct: 620 VLEKL-AEDYPLPRVILDHRSLSKLKSTYTEKLPQMINPDTGRVHTNYAQAVAVTGRLAS 678 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP++T G++IR AFI+P + S+DYSQIELRI+AH+++ L F Sbjct: 679 NDPNLQNIPVRTAEGRRIREAFIAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAAGE 738 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR AAEIFGV +VS RR AK INF +IYG+S F LA L + RS A YI RY Sbjct: 739 DIHRATAAEIFGVTPLEVSSDQRRMAKVINFGLIYGMSAFGLARNLGLERSAAQLYIDRY 798 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PG+ Y+E+T+ + GYVET+FGRR+ +I++ R ERAAINAP+QG+ Sbjct: 799 FARYPGVAAYMERTRKLAAEQGYVETVFGRRLWLPDIHA-SGPRRAAAERAAINAPMQGT 857 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD+ + AMI+V +L KL +++++Q+HDELV EVPEEE + I M Sbjct: 858 AADLIKMAMIAVDAALMREKLRSRVVMQVHDELVLEVPEEETHWVREHIPRLMAGVA--- 914 Query: 956 INLRVPLKVNIKVSNNWQ 973 L VPL + + NW+ Sbjct: 915 -QLDVPLLAEMGLGANWE 931 >gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As] Length = 922 Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust. Identities = 336/978 (34%), Positives = 526/978 (53%), Gaps = 82/978 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R +G P A+ G ML +L + + A +FD Sbjct: 13 LLLVDGSSYLYRAFHAMPDL-RGPEGQPTGALYGMVAMLRRLREQYPVAKGYRYAACVFD 71 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFRN +Y YKA RP +P L+ Q+ + A + G P +E+ G EADD+I T Sbjct: 72 AKGPTFRNAMYDQYKAQRPPMPPDLVAQIEPIHQAVRLMGWPLLEVPGVEADDVIGTLAV 131 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A +G + + DKD+ QLV+ L +T+ E +D V +K+G+PP+++V L Sbjct: 132 RAHAQGIRTLVSTGDKDMAQLVNDHITLVNTMSNEVLDPAGVQQKFGVPPDRIVDYLTLV 191 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYAETARLSR 244 GD++DN+PG+ +G KTA L EYG+L+ ++ A + K L++ TAR Sbjct: 192 GDAVDNVPGVDKVGPKTAVKWLTEYGSLDALIEQAETVSGAAGKNLRAALDWLPTAR--- 248 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 KLV + TD C+ ++ A +D D + P Sbjct: 249 KLVTIHTD--------------CD----------------LDGYAQAFDPD---LRPAPE 275 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 D A+ R+ + S ++ ++ SEQ +++ L L P Sbjct: 276 DAQ-------ALLPFFTRNGMRRFS-----AEMKAQTVSEQAARQVSL-----LDGAPAA 318 Query: 365 NDS----YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 S Y +++ W+ +++ + TD++D ++ I I++S Sbjct: 319 EKSAPGTYDTVLDWDRFDAWLTRIDAAELTAIDTETDSLDPMRARLIGISLSVTPG---- 374 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 E ++ L+ H + + + E+L L+ + EN K+G N KYD+ V G Sbjct: 375 ----EAAYLPLA-HAYPGAPEQLPMA-EVLERLRPWLENADKPKLGQNAKYDRHVFANAG 428 Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL----SYTRKEILKSRKSSIPIDKISD 535 +++RG+ D +L SYV+++ + H + S+ + L + + +++ +I D+++ Sbjct: 429 VTIRGYAHDTLLESYVIEAHKP-HSLDSLVSRHLGRDDTLSYEQVCGKGAKAITFDQVAL 487 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 ++ E++++ LQ+ L P++ + L L+ + +V+ ++E TG+ +D DLL Sbjct: 488 DVATRYSGEDADLTLQVHQRLWPQIQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLL 547 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 + S E+ + +LE ++L+G FNL SPKQ+G+ILF +L+ P KT +G T + Sbjct: 548 RAQSGELGAKMQTLEAQAFELAGGAFNLGSPKQIGEILFDRLQLPVQKKTASGAPSTDEE 607 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ D P+ + IL+ R LSK+KSTY + LP IN T RVHT Y+ A +TGRLAS Sbjct: 608 VLEKL-AEDYPLPRVILDHRSLSKLKSTYTEKLPQMINPDTGRVHTNYAQAVAVTGRLAS 666 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP++T G++IR AF++P + S+DYSQIELRI+AH+++ L F Sbjct: 667 NDPNLQNIPVRTAEGRRIREAFVAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAAGE 726 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR AAEIFGV +VS RR AK INF +IYG+S F LA L + RS A YI RY Sbjct: 727 DIHRATAAEIFGVTSLEVSSDQRRMAKVINFGLIYGMSAFGLARNLGLERSAAQLYIDRY 786 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PG+ Y+E+T+ + GYVET+FGRR+ +I++ R ERAAINAP+QG+ Sbjct: 787 FARYPGVAAYMERTRKLAAEQGYVETVFGRRLWLPDIHA-SGPRRAAAERAAINAPMQGT 845 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD+ + AMI+V +L KL +++++Q+HDELV EVPEEE + I M Sbjct: 846 AADLIKMAMIAVDAALVREKLRSRVVMQVHDELVLEVPEEETHWVREHIPRLMAGVA--- 902 Query: 956 INLRVPLKVNIKVSNNWQ 973 L VPL + + NW+ Sbjct: 903 -QLDVPLLAEMGLGANWE 919 >gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] Length = 936 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 254/623 (40%), Positives = 384/623 (61%), Gaps = 24/623 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + D Y + + +Q WV ++ G + T +D + I++ Sbjct: 325 FDKDKYECVRDAAALQVWVDRIRERGRVAVDTETTGLDEMVVDLVGISLCVE-------- 376 Query: 423 KVETIFIDLSVHTSQD--------STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 E +I L+ D S G+ L +E ++ LK E+ LKIG N+KYD Sbjct: 377 AGEACYIPLAHKAGGDDLFGGEGLSEGQMPL-EEAVAMLKDVLEDPAVLKIGQNMKYDAK 435 Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPID 531 +LHRYG+ + +D MLMSY L +G H + ++++++L +T K +L S KS++ D Sbjct: 436 ILHRYGVDVAPIDDTMLMSYALHAGLHGHGMDTLSERYLDHTPIPIKPLLGSGKSAVTFD 495 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 ++ +A E++++ L+LW +P+L E++ VYE L++P++ V+++ME GI++D Sbjct: 496 RVPIEDAVPYAAEDADITLRLWQTFKPQLHQERVTTVYETLERPLVPVLAEMERNGIKVD 555 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +D L ++S ++ + LE I++L+GE FN+ SP QLG+ILF K+ G + K G++ Sbjct: 556 RDTLSRMSNAFAQKMAGLEAEIHELAGETFNVGSPAQLGEILFDKMGLEGGKRGKNGKYS 615 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A LE + ++ + + +L+WRQLSK+KSTY D+L +HINK T RVHT Y+ TG Sbjct: 616 TGADILEDLAT-EHDLPRRVLDWRQLSKLKSTYTDALQDHINKDTGRVHTSYAQTGASTG 674 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 R+AS +PNLQNIP++++ G++IR AF++ L+S DYSQIELRILAH+A I L Q F Sbjct: 675 RMASTDPNLQNIPVRSEEGRRIREAFVAEEGNVLLSLDYSQIELRILAHMAGIETLQQAF 734 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIH + A+E+FGV +E+++P++RR AK INF +IYGIS F LA LRIPR +A + Sbjct: 735 AEGQDIHALTASEMFGVPLEEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRKDAQGF 794 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I RYF RFPGI +Y++ T F +++GYV+T+FGR+IH EIN+ K +RAAINAP Sbjct: 795 IDRYFERFPGIRKYMDSTVEFAKEHGYVQTLFGRKIHTAEINA-KGPKAGFAKRAAINAP 853 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AAD+ RRAMI + +++ L +MLLQ+HDEL+FEVPE + ME A Sbjct: 854 IQGTAADVIRRAMIRMPEAIA--HLPARMLLQVHDELLFEVPEAAVEDTIAAAREVMENA 911 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 P ++L V L V+ NW E Sbjct: 912 ADPAVHLDVKLVVDAGRGKNWAE 934 Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 144/287 (50%), Positives = 203/287 (70%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLP+ A+AGFCNML+K +++++ +H A Sbjct: 8 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVAGFCNMLFKQVEDNKGPDAPTHVA 67 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD+ ++FRNE+Y YKANRP PE L+PQ PL R AT+AF I E++G+EADDIIA Sbjct: 68 VIFDHSGMSFRNEMYDQYKANRPPAPEDLVPQFPLTREATKAFNIACKEVEGYEADDIIA 127 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A + G VTIIS+DKDLMQLV + D +K ++ID + V++K+G+ P+++V + Sbjct: 128 TLACQAREAGGQVTIISSDKDLMQLVGDGVEMLDAMKNKRIDSDGVVEKFGVGPDRVVDV 187 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ E+G+LE +L A IKQ KRR+ ++E E L Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEELLDRAEEIKQPKRRQTLIEMREQIEL 247 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 S+KLV L D+ + L+ L + + + L++FL +EF L R+A Sbjct: 248 SKKLVQLDCDMELDFTLDDLEVMEPDAETLMTFLTEMEFRTLSKRMA 294 >gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] Length = 984 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 358/1026 (34%), Positives = 540/1026 (52%), Gaps = 118/1026 (11%) Query: 4 ENHLF-LVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 E LF LVDG S +R++YA R G+P + GF L +++ + + +++A Sbjct: 20 EKPLFILVDGHSLAFRSYYAFAKGRDGGLRTKSGIPTSVCFGFLKSLLEVISSQQPQAMA 79 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 V FD TFR++ YKA+RP+ PE +P L ++ A +P + + G+EAD Sbjct: 80 ----VTFDLELPTFRHKADDTYKADRPETPEDFIPDLQNLKELLTALNLPVLAVPGYEAD 135 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLYDTVKE---------EKIDIE 166 D++AT + A EG+ V I++ D+DL QL+ P T LY + K E+ + Sbjct: 136 DVLATLAHRATDEGYQVKILTGDRDLFQLIDPQKSITVLYLSHKALKSGSSTGLEEYSTQ 195 Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226 V K GI PE++V +AL GD DNIPG+ GIG KTA LL ++G+LE I + +IK Sbjct: 196 GVKNKLGITPEQVVDYKALCGDKSDNIPGVRGIGEKTAVKLLNDFGSLEGIYASLDQIKG 255 Query: 227 KKRRENILEYA-ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 + + LE + A S+ L L D P+ + L+ LE + L FL+ LEF + Sbjct: 256 AVKTK--LETGKQDAEHSKYLAQLAFDAPVDVELKAGKLEGFDTSVLKPFLQKLEFEFFL 313 Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345 ++ N VV D T + + D + S +++ D+T Sbjct: 314 KKIDEIQQRFGGN---VVEDTGTESDPSV-------EDNSPDLSFWTA--DETEDYQK-- 359 Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDT----MD 400 Q + PI +I++TKD + Q V LE + + DT + Sbjct: 360 ----------QAAASCPIQ----PRIIDTKDKLDQLVDILENCTNIETPVAWDTETSDLK 405 Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460 +++ + I + DT++ + + +Q G+N + +L L+ E + Sbjct: 406 PRNAELVGIGCCWGLEATDTAY--------IPIAHNQ---GQNLDQQTVLEALRPILERD 454 Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519 + K+ N+K+D+LVL GI + G D ML SYVL+ +SH++ S+ +++ + Sbjct: 455 RYPKVLQNVKFDRLVLRTQGIKLAGVVMDTMLASYVLNPD-NSHNLNSLTERYFPQIQ-- 511 Query: 520 ILKSRKS-SIP----IDKISDSQVQEHAIENSNVILQLWLLLRPKL----IVEKLLHVYE 570 LKS K IP I ++S V + +L LR KL +EKLL Sbjct: 512 -LKSYKDLKIPKGKTIAELSSKTVANYCGMQVYATFKLVPKLREKLEAIPAIEKLLL--- 567 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 +++P+ V++QME GI+ID LK++S + K L+ +E+N Y +GE+FNL SPKQL Sbjct: 568 EVEQPLEPVLAQMEYQGIRIDTAYLKELSESLEKKLVDIEQNAYKQAGEEFNLGSPKQLS 627 Query: 631 DILFTKLKFP--SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 ++LF KL K KTG + T LE++ GD+P+I ILE R LSK+KSTY D+L Sbjct: 628 ELLFEKLNLDRRKSRKMKTG-YSTDHATLEKLQ-GDHPVIDTILEHRTLSKLKSTYVDAL 685 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748 P ++K TQR+HT ++ T TGRL+S PNLQNIPI+T ++IR+AF+ L+SA Sbjct: 686 PKLVHKDTQRIHTDFNQTITSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLLVSA 745 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELRILAH+++ L + + N+ DIH + A +F E V+P+ RR KTINF + Sbjct: 746 DYSQIELRILAHLSQEPVLVETYRNNQDIHAVTAKLLF--EKETVTPEERRLGKTINFGV 803 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 IYG+ P R A + + +E ++I R R+P + Y+E+ K GYVETI GRR Sbjct: 804 IYGMGPQRFAREAGVSAAEGKEFIDRLKQRYPKVFGYLEQMKGDAIAKGYVETILGRR-R 862 Query: 869 YDEINSPK--------------SSIRNINE------RAAINAPIQGSAADITRRAMISVH 908 Y E NS + + I + RAA NAPIQGS+ADI + AM+ +H Sbjct: 863 YFEFNSNRLRDAKGKNPQEIDLDEFKGIGQYDSGLLRAAANAPIQGSSADIIKIAMVKMH 922 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 + L+D++ ++LLQ+HDELVFEVP +E I +ME A + L VPL V++ Sbjct: 923 EVLQDYQ--ARLLLQVHDELVFEVPPDEWEELQPKIRETMESA----VELTVPLVVDVSE 976 Query: 969 SNNWQE 974 NW E Sbjct: 977 GENWME 982 >gi|32423736|gb|AAP81263.1| DNA polymerase type I [Bacteroidetes bacterium endosymbiont of Bemisia tabaci] Length = 939 Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust. Identities = 338/981 (34%), Positives = 529/981 (53%), Gaps = 73/981 (7%) Query: 7 LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LFL+DG S IYRA +A + GL AI GF N L LL+ + +H V F Sbjct: 8 LFLLDGMSLIYRAHFALGKAATTTAQGLKTGAILGFVNTLVALLEKEKP----THLIVAF 63 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+ ++P YK++RP PE + +P ++ + FGI AI G+EADD++ T Sbjct: 64 DGKEKTFRHALFPAYKSHRPVQPEEISIAIPYIKSILEGFGILAITYSGYEADDLLGTLA 123 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKIDI---EHVIKKWGIP-PEKMV 180 A G I+STDKDL Q+V LY + EK I + ++ +W I PE++ Sbjct: 124 KKAAVMGCRTYIMSTDKDLAQIVGDNIYLYKPSSYGEKSTILGEKEILAQWEIARPEQVR 183 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + AL GD D IPGIP IG KTA L++E+ NLENIL + S + K + N+++YA+ Sbjct: 184 DILALEGDPSDFIPGIPSIGKKTARKLIKEFDNLENILAH-SHMLTGKLKANLIQYADQG 242 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS++L +RT+VPIT+ LE + N +L LEF +L R+ + + A + Sbjct: 243 ILSKELATIRTNVPITLDLEKCHYQGPNKVKLEPIFSLLEFKQLKQRLFGKPNPEKATNQ 302 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 PV L D + SQ ++ S+ L+R ++ Sbjct: 303 PVGL---------------FDGINPMAKSQENNHSNGHG------------LDRQPHTTE 335 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 D+Y I ++ ++KLE+ +F I T MD + + IA + + T Sbjct: 336 GQHEQDAYALIETLPACEKLLEKLESATKWAFDIATTGMDPHLADLLGIAFA---YQPGT 392 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 ++ +I L + + + L+ L+ F+ LK+GHN+K +V+ R+G Sbjct: 393 AY-----YIALPPNKAA--------AQPFLALLQPLFQRTDVLKVGHNLKNALIVMQRHG 439 Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540 +S+ ++++ L + H + ++++++L++ + LK + +K S+ ++ Sbjct: 440 LSIAPPLFDTMIAHGLVAADMDHHLTTLSEQYLNH--RSYLKPPNRA---EKESEG-IKN 493 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 +A E ++++L ++ + L K+ ++ R++ P++ V+ ME+ G+ ID L + + Sbjct: 494 YAGEGADLVLHIYPKIAQALREHKVATLFYRVEMPLVQVLVAMELAGVSIDLPFLATLGS 553 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA-KTKTGQWKTTAQDLEQ 659 E+ +L+E IY L+ FN+ SPKQLG +LF KL + KTK GQ+ T L + Sbjct: 554 EMEPTTKALKEKIYTLAQTTFNIDSPKQLGVVLFEKLALHTKPMKTKGGQYATGEAILAK 613 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 ++ +PI+ I+E+R K++STY D+LP ++ QR+H Y TGRL++ PN Sbjct: 614 LS-KVHPIVPLIMEYRTWQKLRSTYVDALPTLLHPIDQRLHATYHQTVVTTGRLSATGPN 672 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLD 776 LQ IPI+T G+ +R+AFI P +K L SADYSQIELRI+A A+ T + F++ D Sbjct: 673 LQQIPIRTPTGRALRKAFI--PHQKGDCLFSADYSQIELRIMAAYAQDTTMIMAFQSDQD 730 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAADYIKRY 835 IH++ A ++F I V +MR+ AK NF IIYGISPF L+ ++ + R EAA+ I+ Y Sbjct: 731 IHQITAQKLFKTVI--VDQEMRQKAKIANFGIIYGISPFGLSERMEHLSRKEAAELIEAY 788 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F FPGI YI+ + NGYV T+ GR+ ++ + + R + R AIN PIQGS Sbjct: 789 FEAFPGIKTYIDDSIAHAEANGYVRTLLGRKRFLPDLYASNPTTRGVARRNAINTPIQGS 848 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AA++ + AMI + LE HKL+TK+++Q+HDELVF VP EI I M A LP Sbjct: 849 AAEMIKLAMIHIQDWLEKHKLSTKLIIQVHDELVFNVPRSEIADIQHHIPLLMATA-LPL 907 Query: 956 INLRVPLKVNIKVSNNWQEEN 976 N VP+KVN + NW E + Sbjct: 908 EN--VPIKVNWNIGANWLEAH 926 >gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] Length = 881 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 342/965 (35%), Positives = 509/965 (52%), Gaps = 120/965 (12%) Query: 44 MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLAT 102 ML KL + + ++F V+FD TFR+++YP YKA+RP +P+ L Q+ PL RL Sbjct: 1 MLAKLYDDHQP----AYFGVVFDAKGKTFRHDLYPAYKAHRPPMPDDLRVQIEPLHRL-I 55 Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEE 161 +A G P I G EADD+I T A E + V I S DKD+ QL++ L DT+K Sbjct: 56 EALGFPLIIEPGVEADDVIGTLAMQALSEHYQVVISSGDKDMAQLLTHADITLLDTMKNA 115 Query: 162 KIDIEHVIKKW---GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218 ++ +++ + ++++ AL GDS DNIPG+ +G KTAA L EY ++N++ Sbjct: 116 VTTTANIAERFKVDALRADQVIDFLALVGDSADNIPGVAKVGPKTAAKWLAEYQTIDNLI 175 Query: 219 INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278 +AS+I K +N+ +T RLS+ L + T + + + L L+ PR L A Sbjct: 176 DHASKIPGKI-GDNLRAGIDTLRLSQTLATINTTLDLNTRIADLALQ----PRQPDKLAA 230 Query: 279 LEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338 L TY+ ANI+ L + + T TT+ + +L Sbjct: 231 L---------CDTYEL--ANIKAQYLKNSAPPPPAAPVATHYRAITTL--DELDAL---- 273 Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT 398 + RLQ N+D Y ++T+ TD+ Sbjct: 274 -------------INRLQ-------NSDGYA--IDTE--------------------TDS 291 Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458 +D + + I+++ E ++ L+ S + TLT+ LK E Sbjct: 292 LDYMRANLVGISVA--------PAPGEAYYLPLAHQLSANLPYAETLTR-----LKPLLE 338 Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY-- 515 K G + KYD+ + R GI +RG +D MLMSY +DS + H++ +A +L++ Sbjct: 339 ASAPPKSGQHHKYDRHIFARAGIELRGIKDDTMLMSYTIDSTATRHNLDDLADYYLNHQT 398 Query: 516 -TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLD 573 T ++I + D+I +A E++++ L+L L PKL V +L +Y L+ Sbjct: 399 TTFEDIAGKGAKQLTFDQIPLETATAYACEDADITLRLKNHLAPKLAAVPQLDALYRELE 458 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 P+ +++ ++E TG++ID L SAEIS L +LE + L+G FNL SPKQL +IL Sbjct: 459 MPLAELLYKIEATGVRIDPAALAAQSAEISGQLAALEHAAHTLAGSPFNLGSPKQLQEIL 518 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 + +L P KT GQ T + L ++ + + ILE R L+K+K+TY D LP I Sbjct: 519 YDQLGLPVLRKTPKGQPSTNEEVLAELAESHGAELPRLILEHRGLAKLKTTYTDRLPELI 578 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752 N T R+HT Y A T TGRL+S +PNLQNIP++++ G++IRRAFI+ ++++ADYSQ Sbjct: 579 NPHTGRIHTSYHQAVTSTGRLSSSDPNLQNIPVRSEAGRRIRRAFIAEDGWQILAADYSQ 638 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELRI+AH++ L F DIHR AAEIFGV E VS + RR AK INF +IYG+ Sbjct: 639 IELRIMAHLSADPGLLAAFARGDDIHRATAAEIFGVAPEAVSREQRRDAKAINFGLIYGM 698 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S F LA QL IPR +AADYI YF R+P + +Y++ T+ + GYVET+ GRR++ +I Sbjct: 699 SAFGLARQLNIPRGQAADYIDTYFARYPKVRDYMDATREAAHKQGYVETLLGRRLYLPDI 758 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL---------------A 917 NS R +ER AINAP+QGSAADI +RAM+++ + LE L A Sbjct: 759 NSKNPQRRQASERLAINAPMQGSAADIIKRAMLAIDRELELSPLPGAGGTHNTNPLPREA 818 Query: 918 T--------KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 T ++++Q+HDELVFE+ + + IV ME A + L VPL V + Sbjct: 819 TAAKNRDDLRLIMQVHDELVFEIRPQAAAELTPRIVALMENA----MTLSVPLIVETGLG 874 Query: 970 NNWQE 974 NW E Sbjct: 875 ANWDE 879 >gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] Length = 936 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 334/996 (33%), Positives = 525/996 (52%), Gaps = 97/996 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L LVDG + YRAF+A R G P A+ GF +L L R + +A F V Sbjct: 6 LILVDGHALAYRAFFALRESGLRSSRGEPTYAVFGFAQILLTALAEYRPDYVAVAFDV-- 63 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 TFR+++Y +YKA R + PE PQ ++ QA IP +GFEADD+I + Sbjct: 64 ---GRTFRDDLYAEYKAGRAETPEEFYPQFERIKQLVQALSIPIYTAEGFEADDVIGSLA 120 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS--------------PTTCLYDTVKEEKIDIEHVIKK 171 A ++G I++ D D +QLV+ +T LYD +E V K+ Sbjct: 121 RQATEQGVDTIILTGDTDTLQLVNEHVRVALANPYGGKTSTTLYD--------VEQVRKR 172 Query: 172 W-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 + G+ P ++ L+ L GDS DNIPG+ GIG K A LL+++G+L+ +L N KR Sbjct: 173 YDGLEPAQLADLRGLKGDSSDNIPGVRGIGEKGAITLLKQFGSLDKLLDNIE--AAPKRY 230 Query: 231 ENIL-EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF---TKLIN 286 +++L E A+ AR SR L + TD P+ + L L + +++ L+ LEF + LI Sbjct: 231 QHLLREQADQARSSRHLATIVTDAPVQLDLAKCRLGVYDRAAVMALLQELEFGVSSNLIK 290 Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346 ++ + AA + + D+ T +++ + F++ S + ++S + Sbjct: 291 KLPSV--VQAATVATLPADLPTAPQG------------SVQLALFANESASPTMVSSVTS 336 Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406 Q + + + + + VQ+L +F ++ A S Sbjct: 337 AQI---------------------VRDPQALAELVQRLRAAPGFAFDTECTSLQAVGSHL 375 Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466 + IA++ +D + V + G+ ++++ L F + + K Sbjct: 376 VGIALAI--APNDAYY----------VPVGHEE-GEQLPLADVVAALGPLFADPNIPKFA 422 Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKS 523 HN K+D VL GI + G D M+ + +L + D+A K T ++++ Sbjct: 423 HNAKFDAEVLAGVGIQVAGLAFDTMIAAAMLGKRQGLKDLAFYELKLPEPPTTIEDLIGR 482 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQ 582 I + Q +A ++ L L LR +L + L +Y R++ P+IDV++ Sbjct: 483 GSKQISFAAVPIEQAAPYAAADALHTLLLTETLRGQLTTDTALRDLYYRVELPLIDVLTD 542 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PS 641 ME+TGI +D + L+++ ++ + L E IY +G FN++S +QL ++LF +L P Sbjct: 543 MELTGILLDHEYLRELGKRFAQRIAELTEQIYAKAGGPFNINSGQQLNEVLFERLGINPR 602 Query: 642 G---AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 +K K+G + TA+ LE+++ PI +IL +RQL+K+KSTY D+LP +N RT R Sbjct: 603 DYGLSKLKSGGYSITAEVLEELSQ-LYPIAADILAYRQLTKLKSTYIDALPQLVNPRTGR 661 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 +HT Y+ TGRL+S PNLQNIP++T+ G++IRRAF++ P + ++ADYSQIELR+L Sbjct: 662 IHTSYNQIGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAAPGHRFVAADYSQIELRVL 721 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AHI+ L F+ LDIH A+ +FGV ++V RR AKT+ F +IYGIS F LA Sbjct: 722 AHISGDENLIAAFQQGLDIHAATASRLFGVAPDQVDKNQRRVAKTVVFGVIYGISAFGLA 781 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 +L I R A I F +FPGI YI++T F RQ+GYV+T+FGRR +++ + + Sbjct: 782 QRLGIERDLARQLIDNLFEQFPGIRRYIDQTLAFGRQHGYVQTLFGRRRVMEDLRA-SGA 840 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 R ER AINAPIQG+AADI + AM+ VH++L + L T++LLQ+HDEL+ E PEEE+ Sbjct: 841 RRAAAEREAINAPIQGTAADIMKMAMVYVHRALRERGLRTRLLLQVHDELIAEAPEEEVP 900 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 A+ ++ M L VPL VN++ NW+E Sbjct: 901 AAAHLLREVMSNTY----QLVVPLGVNLETGPNWEE 932 >gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] Length = 896 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 310/977 (31%), Positives = 522/977 (53%), Gaps = 94/977 (9%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N LFL DG++ +YRA++A + G P NA+ G ML + ++N E + FA Sbjct: 3 NRLFLFDGTAIVYRAYFAIDVSLTNSKGEPTNAVYGTARMLSRFIKNYIAEGDYALFA-- 60 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD T R++++ YKA R ++P+ L+ QL + + FGI + EADDIIAT Sbjct: 61 FDRKEATHRHDLFEGYKATRAEMPDALVAQLKYIPDLVEGFGIKFHSVATLEADDIIATA 120 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 + + I+S DKD++QLV + V E+ D V +K+G+PPEK+ Sbjct: 121 VTKYRDKFDEIVIVSGDKDILQLVDEKVKVLRFVSGLTDLEEYDRRKVEEKFGLPPEKIY 180 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L +L GD+ DNIPG+PGIG KTA LL+EYG+++ I N ++ R+ Sbjct: 181 ELLSLCGDTSDNIPGVPGIGIKTALKLLKEYGSIDEIYKNIRKLSPGLRK---------- 230 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +L+ KALE +K + R+ T D Sbjct: 231 ------------------------------KLMDGKKALEMSKKLVRLVTDAD------- 253 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 L I E + ++ E R+ +K +F+SL + L L Sbjct: 254 ---LHIELEELRYRGLDKEKLRELFLKL-EFASLLREFD---------------LTNLGS 294 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 ++ Y + + +++ + + L+ S + T ++D +K + I+++ D Sbjct: 295 DNNEDNGYRPVSSQQELDELFETLKGSDVISIDLETSSLDPHEAKIVGISVAIKDG---- 350 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 E +I ++ H S D K++L LK+ E+ +G N+K+D +L ++G Sbjct: 351 ----EGFYIPVN-HESSDWQADE---KQVLLRLKELLEDSGTKIVGQNLKFDYEILEKHG 402 Query: 481 IS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536 I + D M+ +Y+L+ ++ +A K+L Y + E++ + +K+S Sbjct: 403 IEPVVPHFDTMIAAYLLNPDSRRFNLDDLALKFLGYRTTSFSELMNKNQLKDQFEKVSVE 462 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 + ++++E++++ L+L+ +L KL L +++ +++ +I V++++E+ G+ ++ + LK Sbjct: 463 EAAKYSVEDADIALRLYRVLSKKLYESDLDNIFHKIEMELIPVLAELELNGVYMNVESLK 522 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 +S E K L + E +++L+GE FN +SP Q+ ILF KL KTK G + T+A Sbjct: 523 NLSEEYEKRLGKIREELFELAGEPFNPNSPTQVSKILFEKLGLNPPKKTKHGAYSTSAAV 582 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE++ ++PII+ +L++R+ K+KSTY D+LP +N T R+H Y T TGRL+S Sbjct: 583 LEEL-VNEHPIIQKLLDYRKYQKLKSTYLDTLPTLVNPVTGRIHASYHQTGTGTGRLSSS 641 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSL 775 PN+QN+PIK + G++IR+ + + K+ISADYSQIELR+LAH ++ L F+N Sbjct: 642 NPNMQNLPIKGEEGKEIRKCVVPQKSDWKIISADYSQIELRVLAHFSEDERLISAFKNGE 701 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+H + A+ ++GV+++ V+P+MR+ K +NFSIIYGISP+ LA +L+I A + I Y Sbjct: 702 DVHALTASRLYGVSVKDVTPEMRQVGKMVNFSIIYGISPYGLARRLKIKTHIAENMISNY 761 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F+ +PG+ ++I + + ++ GYV T+FGR+ + ER AIN PIQG+ Sbjct: 762 FNAYPGVRKFINEVIHEAKEKGYVRTLFGRKREIPHFRTRNKMKIQEGERIAINTPIQGT 821 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AMI +HK +++ L +LQ+HDELVFE P E+ I+ M Sbjct: 822 AADIMKLAMIKIHKMVKEEGLEAFPILQVHDELVFEAPATEVDRVCDILTRGMSGV---- 877 Query: 956 INLRVPLKVNIKVSNNW 972 + L+VPL+V++ V++ W Sbjct: 878 VELKVPLEVDVAVNSYW 894 >gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] Length = 942 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 341/998 (34%), Positives = 531/998 (53%), Gaps = 98/998 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L LVDG + YRAF+A R G P A+ GF +L L R + + AV F Sbjct: 6 LVLVDGHALAYRAFFALRESGLRSSRGEPTYAVFGFAQILLTALAEYRPD----YAAVAF 61 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+++Y +YKA R + PE PQ ++ QA IP +G+EADD+I T Sbjct: 62 DV-GRTFRDDLYAEYKAGRAETPEEFYPQFERIKQLVQALNIPIYTAEGYEADDVIGTLA 120 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS--------------PTTCLYDTVKEEKIDIEHVIKK 171 A + G I++ D D++QLV+ + LYD +E V K+ Sbjct: 121 RQATERGVDTIILTGDSDVLQLVNDHVRVALANPYGGKTSVTLYD--------LEQVRKR 172 Query: 172 W-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKK 228 + G+ P+++ L+ L GD+ DNIPG+ GIG K A LL+++ +L+ +L I+A+ K Sbjct: 173 YDGLEPDQLADLRGLKGDTSDNIPGVRGIGEKGAIALLKQFRSLDALLEQIDAA----PK 228 Query: 229 RRENIL-EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF---TKL 284 R + +L E AE AR SR+L + TDVP+ + LE + + +++ + LEF + L Sbjct: 229 RYQTLLREQAEAARFSRQLATIVTDVPVQLDLEAARIGVYDRSAVMALFQELEFGVSSNL 288 Query: 285 INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344 I ++ P V+ T E+ D + + ++ Q S E Sbjct: 289 IKKL------------PSVVQAPTL--------AELPAD--LPAAPLTTAPTQLSLFAGE 326 Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHS 404 P Q ++ P T + + + V +L + +F ++ S Sbjct: 327 SEPA-------QPTAEPP----PVTIVRDATALADLVSRLRNAPAFAFDTECTSLQPVAS 375 Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464 + I+I+ DT +I + H S+ E+++ L FF N K Sbjct: 376 DLVGISIAI---APDT-----VCYIPVG-HQSE----TQVPCGEVVTALAPFFANPQQPK 422 Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEIL 521 HN K+D VL GI + G D M+ + +L + D+A K T ++++ Sbjct: 423 FAHNAKFDMEVLAGAGIKVSGLAFDTMIAAAMLGKRQGLKDLAFYELKLPEPPTTIEDLI 482 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVV 580 I ++ Q +A ++ L+L L+ +L E LH +Y R++ P+I+V+ Sbjct: 483 GRGNKQISFAEVPVEQAAPYAAADALYTLRLTERLQRQLEAEPALHDLYYRVELPLIEVL 542 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 + ME+TGI++DQ+ L+++ ++ + L E IY +G FN++S +QL D+LF +L Sbjct: 543 TDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQQAGGPFNINSGQQLNDVLFGRLGID 602 Query: 641 SGA----KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 A K K+G + TA+ LE+++ PI +IL +RQL+K+KSTY D+LP+ +N RT Sbjct: 603 PRAHGLSKLKSGGYSITAEVLEELSQ-LYPIAADILTYRQLTKLKSTYIDALPDLVNPRT 661 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 R+HT Y+ TGRL+S PNLQNIP++T+ G++IRRAF++ P + ++ADYSQIELR Sbjct: 662 GRIHTSYNQLGAATGRLSSNNPNLQNIPVRTEEGREIRRAFVAEPGWRFVAADYSQIELR 721 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +LAH++ L F+ LDIH A+ +FGV V RR AKT+ F +IYGIS F Sbjct: 722 VLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAFG 781 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 LA +L I R A I F +FPGI YI++T F RQ+GYV+T+FGRR +++ + Sbjct: 782 LAQRLGIERDLARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDLRA-S 840 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 + R ER AINAPIQG+AAD+ + AM++VH++L + L T++LLQ+HDEL+ E PE+E Sbjct: 841 GARRAAAEREAINAPIQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELIAEAPEDE 900 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + A++++ M +L VPL VN++V NW E Sbjct: 901 VEPAARLLRDVMSSVYR---DLVVPLSVNLEVGPNWDE 935 >gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium] Length = 916 Score = 499 bits (1285), Expect = e-139, Method: Compositional matrix adjust. Identities = 331/980 (33%), Positives = 526/980 (53%), Gaps = 78/980 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + L L+DGS+F++RA+++T + +D G P A+ G N + L RK A A Sbjct: 3 HQLILMDGSAFLFRAYFSTLAQNLTNDEGFPTGAMFGVVNAVKHL---QRKYPNAKIIA- 58 Query: 64 IFDYPAVTFRNEIYPDYKANR-PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 IFD R++IYP YKA+R P E+++ PL + +A G + + G EADD+IA Sbjct: 59 IFDAKGKNHRHDIYPKYKAHRKPADSELVMQIEPLYEI-IRAMGFHFLCVPGVEADDVIA 117 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T + A++ I S DKDL QLVS D ++ D + V++K G+ P++++ Sbjct: 118 TLSRCADQNKIKTIIASGDKDLYQLVSDNISQLD-MRGNLYDHDGVVEKMGVRPDQIMDF 176 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 ALTGDS DNIPG+P +G KTA LQ Y ++ + N+++IK K E + + + Sbjct: 177 LALTGDSADNIPGVPSVGPKTAIKWLQAYNDVAGVKENSAQIK-GKVGEKLRDSFGLLDM 235 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKLINRVATTYDCDAANI 299 S +LV L+ DV +P IL+D G +L+S K F+ + ++ T + N Sbjct: 236 SHQLVELKFDV--DLPCN--ILDDEPGQDNIKLVSLYKRYGFSMWLKQLGNTAGTNTDNN 291 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 EP D+ +N+ DR+ SS D+ + Q L LE+ Sbjct: 292 EPPETDLVKEKNR--------DREENC-----SSWFDEYT--------QNLVLEQ----- 325 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 D + V++L+ S F + T ++D ++ + L KD Sbjct: 326 ---------------TDFENLVERLKNSRSFVFDLETTSLDYMNAAIVGWVF--LVDKDS 368 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 V ++D D + L LK ++E K+G N+KYD VL Y Sbjct: 369 FYVPVGHDYLDAPKQLDFD---------DALLTLKPILQDESINKVGQNLKYDAHVLANY 419 Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535 I + G +D M+ SYVL+S + H++ ++ +L++ ++ K I +++ Sbjct: 420 QIDLNGISDDTMVKSYVLNSVATRHNMDDLSMHYLNHQTIHFSDVAGKGKKQITFNQVGL 479 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 +A E+ V +L +L ++ KL+ +Y+ L+ P+I V+ +ME G++ID L Sbjct: 480 EAAFPYACEDVIVTHELNKVLDEDIVQYPKLVKLYQVLEMPLIKVLLRMERNGVEIDAGL 539 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L ++ K + ++ ++L+G+ FNL SPKQ+ ILF++ AK KT + + Sbjct: 540 LNAQQLDVVKQMNEIQSQAFELAGDAFNLESPKQIQQILFSEEGLGLEAKKKTPKGAPST 599 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 + E + D+P++ IL +R L+K+ STY ++LP I+ T+R+HT Y A T TGRL+ Sbjct: 600 NE-EALKLLDHPLVDLILSYRTLTKLNSTYLEALPKQIDLNTKRLHTSYHQAVTATGRLS 658 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S PNLQNIPI+T+LG +IR AFI+ +I+ADYSQIELRI+AHI++ L + F N Sbjct: 659 SSNPNLQNIPIRTELGARIRGAFIAGKGNVIIAADYSQIELRIMAHISQDKSLIEAFNND 718 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 +D+H A+ +F V IE+V+ RR+AK INF +IYG+S F LA Q+ + R+EA YI Sbjct: 719 VDVHSATASMMFNVPIEEVNKDHRRNAKAINFGLIYGMSAFGLAKQINVSRTEAKQYIDA 778 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF +PG+ Y++ + + GYVETI GRR++ +IN+ ++ R AINAP+QG Sbjct: 779 YFENYPGVLNYMDNIREAAKVQGYVETIMGRRLYLPQINAKNKMLQQHALRTAINAPMQG 838 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 S+ADI ++AM+ VH+ + D KM++Q+HDELVFEV + + I M A Sbjct: 839 SSADIIKKAMLDVHEWIGDGNDEIKMIMQVHDELVFEVNASKADEFANKIQELMANA--- 895 Query: 955 KINLRVPLKVNIKVSNNWQE 974 L +PL V++ + ++WQ+ Sbjct: 896 -YQLDIPLVVDVGIGDSWQQ 914 >gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170] gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170] Length = 893 Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust. Identities = 321/976 (32%), Positives = 520/976 (53%), Gaps = 111/976 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DGSS I+RAF+A P L+ DG+ N + GF M ++ ++ + + I V FD Sbjct: 19 VMLIDGSSLIFRAFFALPNLTN-ADGVMTNGVYGFLTMYFRAVEEYKPDYIL----VAFD 73 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ + DYKANR K P L Q +++ + + ++I G+EADDI+ T++ Sbjct: 74 KKTKTFRHKEFEDYKANRDKAPNELNYQFGILKDILDSLNVKYLDIDGYEADDIVGTFST 133 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 IA++EG II+ DKD QLV+ ++ T K E+I ++ + +G+ P++++ + Sbjct: 134 IAKEEGLETVIITGDKDYFQLVNDKVVVFLTRKGISQMEEITVKSIEDDYGLSPKQLIDV 193 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+ GIG KTA +++YG++E + N IK KK + Sbjct: 194 KGLMGDKSDNIPGVDGIGEKTAIKFIKKYGSMEGLYENLDDIKGKKTK------------ 241 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 E+ + I+FL +K I + T PV Sbjct: 242 ----------------------ENLENSKQIAFL-----SKKIGTIVTN--------APV 266 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 + I+ + +K SL ++ SK N + F+E+ + S+ Sbjct: 267 GMKIS---------------ELKVKEPDLDSLREKFSKYNFNK-----FMEKFEDTSEER 306 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + ++ + D + +E G FK I + + HS IAI Sbjct: 307 KDEIEFS--YSFSDDFSIIDDIEKDGVFYFKSIFEEDNYIHSNAYKIAI----------- 353 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 TS T ++ + KK+FE ++ K+ +IK D ++ + GI+ Sbjct: 354 -----------KTSSSKTYIYNPDEKFVEKFKKYFEADNIKKVSFDIKEDIVLFDKLGIN 402 Query: 483 MR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 + ++D MLM Y++D RSS+D+ + +Q +L Y +++L KS + + Sbjct: 403 ISLPYDDTMLMHYLIDPSRSSYDLKTFSQAFLKYEVENEEDLLGKGKSKKSYKDLDSDNL 462 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++ N I +L KL + +Y+ + + V++ MEITG D++ L+++ Sbjct: 463 GKYLASIVNAIEDSLDILTQKLEELSMYDLYKDCEIKLSKVLADMEITGFICDKNELEKI 522 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 E+S L LE+ IY+L+G +FN++SPKQL ILF LK P KTKTG + T AQ LE Sbjct: 523 KDEVSLELGDLEKIIYELAGSEFNINSPKQLSKILFEDLKLPIIKKTKTG-YSTNAQVLE 581 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ +PII+ I +R++ K+KSTY +SL I++ R+ + + T TGRL+S EP Sbjct: 582 KLR-KKHPIIEKIERYREMYKLKSTYLESLEECIDE-DGRIRSTFKQNVTATGRLSSTEP 639 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQN+PI+T+ G+KIR+AF + K LI ADYSQIELR+LAH+A + + F +DIH Sbjct: 640 NLQNLPIRTEEGRKIRKAFKADDGKVLIDADYSQIELRVLAHLANDKKMQEAFSKDIDIH 699 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 A+E+F I++V+ R AK +NF IIYGIS + L+ L IPR A +YI+ Y Sbjct: 700 TKTASEVFSTPIDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNIPRKRAKEYIENYLDT 759 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +P I +Y++ +++GYV TIF RR + EINS ++R+ ER A+N PIQG+AAD Sbjct: 760 YPEIKKYMKDIVKKAKEDGYVNTIFNRRRYVPEINSKNFNVRSFGERVALNTPIQGTAAD 819 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I + AMI+ +++L+ K+ K++LQIHDE++ E ++++ A +I+ SM+ A ++L Sbjct: 820 IIKFAMINSYQNLQKAKIDAKIVLQIHDEIIIEASKKDLEKAKEILKSSMQDA----VDL 875 Query: 959 RVPLKVNIKVSNNWQE 974 +VPL V+I + E Sbjct: 876 KVPLLVDIDSGESMYE 891 >gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] Length = 997 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 331/1038 (31%), Positives = 541/1038 (52%), Gaps = 107/1038 (10%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 MQ++ L+L+D IYR+++A PL++ G V+A+ GF L LL + R Sbjct: 1 MQEKKTLYLLDAYGLIYRSYHAFARAPLINDS--GANVSAVYGFFRSLHTLLCHYRPR-- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +F +FD TFR+ YP YKA R K L Q+PL+ A GI + GFEA Sbjct: 57 --YFVAVFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCALGITVLRHDGFEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH---------V 168 DD+IAT E V IIS+DKD++QLV DTV+ ++DI+H V Sbjct: 115 DDLIATLAKRVAAEHCHVVIISSDKDVLQLVC------DTVQVLRLDIDHKWTCCDAAYV 168 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++W + P +++ L +L GDS DN+PG+ GIG KTAA LL +G L+ I + +K+ Sbjct: 169 QQRWTVMPTQLLDLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYRHTYSLKEAL 228 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 R + I+ + A SR L+ LR DVP LE + C P ++ + + ++ + Sbjct: 229 RTK-IVCGKKDAFFSRSLIELRDDVPCVFSLE----DSCCIPLDVTSAARIFVREGLHAL 283 Query: 289 ATTY-------DCDAAN-----IEPVVLDINTTENKGIAIETEIDRDT-----TIKTSQF 331 A Y D +A N E VL N+ + E T +K+ Sbjct: 284 AQQYRACVQEIDTEATNDTLQMTESSVLTSGRCANECFLSQVEGRASTPEVNSVLKSELK 343 Query: 332 SSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSAS 391 +S I + Q + L R + Y + + ++++ + G + Sbjct: 344 TSAVSGAIPIENRDLRQDVMLAR---------SAGHYRGVTDPVELKRIIDCACANGVVA 394 Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT--SQDSTGKNT----- 444 F TD + ++ + +I ++ +F V I D+S+HT +Q + ++T Sbjct: 395 FDCETDGLHPHDTRLVGFSICF---QEAEAFYVPLIVPDVSLHTESTQCTCARSTNVETE 451 Query: 445 ------------------LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 + ++ L++ + +E + HN K+D V+HR G+ F Sbjct: 452 KECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGV----F 507 Query: 487 E-------DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536 E D M+ +++LD R ++ + +A + + T +E++ ++ + Sbjct: 508 EHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQT---FAHVPYE 564 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +A E++++ +L+ L+ +L LL V+E ++ P++ ++++ME GI + +D+++ Sbjct: 565 CAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQ 624 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 Q++ S + E +I+ L+G +FN+ SPKQL +LF +L P G K G + T Sbjct: 625 QLTRSFSDLIQQYEHDIFSLAGHEFNIGSPKQLQTVLFQELHLPPGKKNTQG-YSTDHSV 683 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 L+++ +PI + IL +R LSK++STY +SL + +T RVHT + T TGRL+S Sbjct: 684 LKKLA-RKHPIAEKILLFRDLSKLRSTYTESLAK-LADQTGRVHTSFVQIGTATGRLSSR 741 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQNIPIK+ G+KIR+AF + +LISADY+QIEL +LAH+++ L F +D Sbjct: 742 NPNLQNIPIKSTEGRKIRQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHID 801 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH + AA IF V+I+ V P MRR AKTINF I+YG+S FRL+ +L+I + EA +I RYF Sbjct: 802 IHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYF 861 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 +PG++ + + R+ GYV ++ GRR + I+S + R ER A+N IQ SA Sbjct: 862 ETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSA 921 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI++ ++ L ++LLQ+HDEL+FE P E +I+ ME A + Sbjct: 922 ADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHA----V 977 Query: 957 NLRVPLKVNIKVSNNWQE 974 L +PL+++++ N+W + Sbjct: 978 ELSIPLRIHVESGNSWGD 995 >gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy] gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy] Length = 948 Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust. Identities = 332/991 (33%), Positives = 538/991 (54%), Gaps = 102/991 (10%) Query: 1 MQKENHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 + + L+++DG S IYR+F+ A P+ R G V+A+ GF + L KL+ +E+ Sbjct: 41 LSSQKKLYIIDGYSLIYRSFFGFFANPI--RDTQGNNVSAVYGFFSTLLKLI----RENN 94 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 + V D TFR+ +Y YKANR PE L Q+PL++ A +P I + GFEA Sbjct: 95 PDYLVVALDSMGPTFRHTMYEPYKANRDAAPEELHTQVPLIQNILTALKVPTIAMPGFEA 154 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT-CLYDTVKEEK----IDIEHVIKKW 172 DDIIAT + A + + + DKDL+QLV T L K EK + + V +++ Sbjct: 155 DDIIATLSEEATRHQIDTIMFTGDKDLLQLVDEHTFALRPAKKNEKFYRLMGCKEVEEEY 214 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKR 229 GI P ++V +L GDS DN+PG+ GIG K AA LLQ++G+LE I N + QKK Sbjct: 215 GIKPSQIVDYLSLLGDSSDNVPGVKGIGEKGAAKLLQQFGSLEGIYSNLKLVAPGLQKKL 274 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 E + E A+LS++LV L+ D+ FT Sbjct: 275 AEGV----ENAKLSKRLVELKRDL---------------------------FT------V 297 Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349 T+D + + +V D++ + I + EI + IK L +S +S P K Sbjct: 298 DTFDTE----QYLVSDVDY--DAAIPLFQEIGMRSIIK-----ELGRVSSGESSSPIPAK 346 Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409 + + K + Y ++ T + K++ + Q ++ G +F + T +D ++ I Sbjct: 347 VEAKSETKQAVY----EAVTDVTQIKNL--FEQAIKAGGVMAFDLETTGLDEMLAQVIGF 400 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 + + K + ++ L VH +++ + +++ S L+++ + +G NI Sbjct: 401 SFCWEEGK--------SYYVPL-VHETKELVDR----EQVRSLLEEYLGSGRLSLVGQNI 447 Query: 470 KYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK 525 KYD VL ++GI + + D M+ +++LDS S ++ +A+K+L Y +I+ K Sbjct: 448 KYDYKVLRQWGIMPKNIYFDTMVAAWLLDS-TSVFNMDYLAEKYLDYKTVHYTDIVPKDK 506 Query: 526 --SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 S IP++ Q + E+++V +L+ L L L + + ++ P++ +++ M Sbjct: 507 LLSDIPLE-----QAVFYGAEDADVTFRLYKLFSELLGARNLRSLLDEVEMPLLVIIANM 561 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E+ GI +++ L++ +SAE + ++ I+ + G FNL+SP+QL ++LF + P+GA Sbjct: 562 ELAGIYLERKLIEPLSAEFEGRIDAIRNQIFAICGHAFNLNSPQQLQEVLFVERNIPTGA 621 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KT++G + T+ LE + D P ++ IL++R L+K+K+TY D LP IN++T R+H + Sbjct: 622 KTRSG-FSTSTDVLEPLR-DDYPEVELILQYRTLNKLKTTYIDKLPLQINEKTHRIHPSF 679 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 + T TGRL+ +PNLQNIP++T+ G++IR AF+ +SADYSQIEL +LAH+A Sbjct: 680 AQTGTETGRLSCKDPNLQNIPVRTEEGRRIRSAFVPQAGHVFLSADYSQIELVVLAHMAD 739 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L F +D+H A+ IF V +++V+P RR AKTINF ++YG+ LA L+I Sbjct: 740 DPGLKGAFAAGIDVHSSTASLIFDVPLDQVTPVQRRIAKTINFGVMYGMGTHSLAMDLKI 799 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 P SEA +I +YF R+ + ++E TK +Q G V T+ G EINS + R Sbjct: 800 PHSEAKQFIDQYFERYSSVRSFVEATKTMSQQVGSVSTLLGHVRTITEINSRSAVERAKA 859 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER A+N IQGSAADI + AM+ V L+ KL ++LLQIHDEL+FEVPE EI + Sbjct: 860 ERIAVNTVIQGSAADIVKLAMLRVDSLLKQKKLGARLLLQIHDELIFEVPEAEIEETKAV 919 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++E A + L VPL+ +I+V +NW + Sbjct: 920 VKEALEHA----VKLSVPLRTSIEVGSNWGD 946 >gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str. Chicago] Length = 1015 Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust. Identities = 331/1038 (31%), Positives = 541/1038 (52%), Gaps = 107/1038 (10%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 MQ++ L+L+D IYR+++A PL++ G V+A+ GF L LL + R Sbjct: 19 MQEKKTLYLLDAYGLIYRSYHAFARAPLINDS--GANVSAVYGFFRSLHTLLCHYRPR-- 74 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +F +FD TFR+ YP YKA R K L Q+PL+ A GI + GFEA Sbjct: 75 --YFVAVFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCALGITVLRHDGFEA 132 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH---------V 168 DD+IAT E V IIS+DKD++QLV DTV+ ++DI+H V Sbjct: 133 DDLIATLAKRVAAEHCHVVIISSDKDVLQLVC------DTVQVLRLDIDHKWTCCDAAYV 186 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++W + P +++ L +L GDS DN+PG+ GIG KTAA LL +G L+ I + +K+ Sbjct: 187 QQRWTVMPTQLLDLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYRHTYSLKEAL 246 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 R + I+ + A SR L+ LR DVP LE + C P ++ + + ++ + Sbjct: 247 RTK-IVCGKKDAFFSRSLIELRDDVPCVFSLE----DSCCIPLDVTSAARIFVREGLHAL 301 Query: 289 ATTY-------DCDAAN-----IEPVVLDINTTENKGIAIETEIDRDT-----TIKTSQF 331 A Y D +A N E VL N+ + E T +K+ Sbjct: 302 AQQYRACVQEIDTEATNDTLQMTESSVLTSGRCANECFLSQVEGRASTPEVNSVLKSELK 361 Query: 332 SSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSAS 391 +S I + Q + L R + Y + + ++++ + G + Sbjct: 362 TSAVSGAIPIENRDLRQDVMLAR---------SAGHYRGVTDPVELKRIIDCACANGVVA 412 Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT--SQDSTGKNT----- 444 F TD + ++ + +I ++ +F V I D+S+HT +Q + ++T Sbjct: 413 FDCETDGLHPHDTRLVGFSICF---QEAEAFYVPLIVPDVSLHTESTQCTCARSTNVETE 469 Query: 445 ------------------LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 + ++ L++ + +E + HN K+D V+HR G+ F Sbjct: 470 KECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGV----F 525 Query: 487 E-------DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536 E D M+ +++LD R ++ + +A + + T +E++ ++ + Sbjct: 526 EHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQT---FAHVPYE 582 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +A E++++ +L+ L+ +L LL V+E ++ P++ ++++ME GI + +D+++ Sbjct: 583 CAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQ 642 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 Q++ S + E +I+ L+G +FN+ SPKQL +LF +L P G K G + T Sbjct: 643 QLTRSFSDLIQQYEHDIFSLAGHEFNIGSPKQLQTVLFQELHLPPGKKNTQG-YSTDHSV 701 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 L+++ +PI + IL +R LSK++STY +SL + +T RVHT + T TGRL+S Sbjct: 702 LKKLA-RKHPIAEKILLFRDLSKLRSTYTESLAK-LADQTGRVHTSFVQIGTATGRLSSR 759 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQNIPIK+ G+KIR+AF + +LISADY+QIEL +LAH+++ L F +D Sbjct: 760 NPNLQNIPIKSTEGRKIRQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHID 819 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH + AA IF V+I+ V P MRR AKTINF I+YG+S FRL+ +L+I + EA +I RYF Sbjct: 820 IHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYF 879 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 +PG++ + + R+ GYV ++ GRR + I+S + R ER A+N IQ SA Sbjct: 880 ETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSA 939 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI++ ++ L ++LLQ+HDEL+FE P E +I+ ME A + Sbjct: 940 ADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHA----V 995 Query: 957 NLRVPLKVNIKVSNNWQE 974 L +PL+++++ N+W + Sbjct: 996 ELSIPLRIHVESGNSWGD 1013 >gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040] gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040] Length = 935 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 254/618 (41%), Positives = 384/618 (62%), Gaps = 23/618 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 YT + + + +QQW+ + G + T ++ + + I++ + + Sbjct: 328 YTTVRDAETLQQWIDLIREHGYVAVDTETTGLNEMIADLVGISLCVV--------PGQAC 379 Query: 428 FIDLSVHT--SQDSTGKNTLT------KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 ++ L+ T S D G + L K+ L LK E++ LKIG N+KYD + R Sbjct: 380 YVPLTHKTGNSDDLFGSDDLAEGQMPLKDALEMLKPVLEDDAILKIGQNMKYDAKIFARN 439 Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536 GI + +D ML+SY L G H + ++++++L + K +L S KS+I D++S Sbjct: 440 GIDVTPIDDTMLLSYALHGGMHGHGMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVSIE 499 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +A E++++ L+LW +P+L +++ VYE L++P++ V++QME GI++D+D L Sbjct: 500 DATPYAAEDADITLRLWQQFKPQLHQKQVTTVYETLERPLVPVLAQMEQHGIKVDRDTLS 559 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 ++S S+ + +LE I++L+GE FN+ SPKQLG+ILF K+ P G K KTG + T A Sbjct: 560 RMSNAFSQKMAALEAEIHELAGETFNVGSPKQLGEILFDKMSLPGGKKGKTGAYATGADI 619 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + ++ + +L+WRQLSK+KSTY D+L HI+ T RVHT Y TGRLAS Sbjct: 620 LEDLAT-EHTLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYLQTGANTGRLASS 678 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++++ G++IR AF++ L+S DYSQIELRILAH+A I L Q F + D Sbjct: 679 DPNLQNIPVRSEEGRRIREAFVADEGNVLLSLDYSQIELRILAHVAGIDALKQAFADGHD 738 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH M A+E+F V +E+++P +RR AK INF +IYGIS F LA LRIPR EA +I RYF Sbjct: 739 IHAMTASEVFDVPLEEMTPDIRRKAKAINFGVIYGISGFGLARNLRIPRGEAQGFIDRYF 798 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 RFPGI +Y++ T NF +++GYV+T+FGR+IH EI + K + +RAAINAPIQG+A Sbjct: 799 ERFPGIRQYMDDTVNFAKEHGYVQTLFGRKIHTPEI-AAKGPRASFAKRAAINAPIQGTA 857 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ RRAM+ + +++ L +MLLQ+HDEL+FEVPE+ + + ME A P + Sbjct: 858 ADVIRRAMVRMPEAIA--HLPARMLLQVHDELLFEVPEDHVEETISVAREIMEGAADPAV 915 Query: 957 NLRVPLKVNIKVSNNWQE 974 ++ V L V+ NW E Sbjct: 916 HMDVKLVVDAGRGQNWAE 933 Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 144/297 (48%), Positives = 204/297 (68%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K HL L+DGS+FI+RA++A P L+RK DGLP+ A++GFCNML+K +++++ +H A Sbjct: 8 KGCHLHLIDGSAFIFRAYHALPPLTRKSDGLPIGAVSGFCNMLFKQVEDNKGPDAPTHVA 67 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD+ +FRN++Y YKANRP PE L+PQ PL R AT+AF I EI+GFEADDIIA Sbjct: 68 VIFDHSGKSFRNDMYDQYKANRPPAPEDLVPQFPLTREATRAFNIACKEIEGFEADDIIA 127 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A + G VTIIS+DKDLMQLV + D +K ++ID + V +K+G+ P+++V + Sbjct: 128 TLACQAREAGGRVTIISSDKDLMQLVGDGVEMLDAMKNKRIDSDGVREKFGVGPDRVVDV 187 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAALL+ E+G+LE++L A IKQ KRR+ ++E + + Sbjct: 188 QALAGDSVDNVPGAPGIGIKTAALLINEFGSLEDLLDRAEEIKQPKRRQTLIEKRDQIEM 247 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 S++LV L D+ + L+ L + D + L+ FL +EF L R+A +A I Sbjct: 248 SKRLVQLDCDMELDFTLDDLEVRDPDADTLLGFLAEMEFRTLSKRMADQLGREAPTI 304 >gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644] gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644] Length = 1040 Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust. Identities = 337/1060 (31%), Positives = 539/1060 (50%), Gaps = 121/1060 (11%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K L+L+D + IY+ F+A PL++ G P NA+ G + L N R++ A Sbjct: 4 KRPTLYLLDSFALIYQVFHAIPLMTGPV-GQPTNAVFGIL----RDLLNLRRQRKPDLMA 58 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 +D P FR+EI P YKA R PE L PQL ++ A + F +P + + GFEADD++A Sbjct: 59 AAWDAPGPVFRSEIDPSYKATRKDQPEDLTPQLDVIARALEGFRVPVVAVPGFEADDVLA 118 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T G+ V + ++DKD QL++ P L + K + ID +WGI PE++V Sbjct: 119 TLARRGAAAGYDVILCTSDKDARQLLTDPAIRLLNLRKGQIIDAAAHRAEWGIGPERVVD 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAET 239 ALTGD++DN+PG+PGIG KTA LL E+G L+ +L A R+ KK + ++E+AE Sbjct: 179 ALALTGDAVDNVPGVPGIGLKTAVKLLNEFGTLDQLLEAARAGRVPGKK-GQALVEHAEA 237 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA-- 297 +R+L+ LR D+P+ L+ + L + + F K + + + DAA Sbjct: 238 LDRARRLIQLRDDLPLKFDPHALVTRPPDVEALQTLCRQCGFHKFLPEI----EADAARW 293 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL--SDQTSKINSEQT-PQKLFLER 354 I P + A + ++I L +D I+S PQ+ F+ Sbjct: 294 GILPASSVAGPGPGQIPAPVPVPEPVSSIAPMPAPPLQANDPLRSIDSHHNQPQQSFIPN 353 Query: 355 LQKL----------------SQYPINNDSYTKIVN-TKDIQQWVQKLETIGSASFKIITD 397 + ++ PI + + ++VN +++ + +L + Sbjct: 354 TETTEIRPVWSATSAPSSVGNERPIWSTAEYRLVNHPEELAKVAAELAGASQLGLWTVPG 413 Query: 398 TMDAFHSKPIAIAISTLDQKD-DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456 + D + + +A+S+ + F + T++D L Sbjct: 414 SPDLHRAAWVGLALSSEPGRGWYFPFMGPPGATVIPAQTARD-------------LLTPL 460 Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515 EN H++K VL R+G ++ G D M++SY+L+SG +H +A+++L++ Sbjct: 461 LENPRIAWHAHDLKAHLRVLKRHGWTLAGKGVDPMVLSYLLESGERNHTAPELAKRFLNH 520 Query: 516 T---------RKEILKSRKSSIPIDKISDSQVQEHAIENSN-------VI---------- 549 T +S+ + P K S+ Q A E +N V+ Sbjct: 521 TLSRPPEPNASATTTRSKPKANP--KRGRSRSQADASEETNPDDETPDVVGLPQTTGTPP 578 Query: 550 -----------------------LQLWL------------LLRPKLIVEKLLHVYERLDK 574 L LW +L ++ E L +Y+ L++ Sbjct: 579 RDGFLVFADDPHQDGPAAVPPERLALWAVEWADASARLGQVLAQRVAAEGLERLYDTLER 638 Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P+I++++ ME G+ +D+ L+Q+S + S L LE + L+GE FNLSSP QL ILF Sbjct: 639 PLIEILADMEEAGVALDRARLRQLSRDFSARLTDLERQAHQLAGEPFNLSSPPQLRVILF 698 Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 +L P KT G+ T + LE++ + + K +LE R++ K+K+TY D+LPN + Sbjct: 699 ERLGLPPRGKTPKGEASTAQEVLEEL-AALHQLPKVLLEHRRIEKLKNTYLDALPN-LTH 756 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS--PPTKKLISADYSQ 752 R+ ++ T TGRL+S EPNLQNIP++T+ G+++R+AF++ P + L++ADYSQ Sbjct: 757 PDGRIRATFNQGVTATGRLSSSEPNLQNIPVRTEEGRQVRQAFVAGDPARQVLLTADYSQ 816 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELR+LAH ++ L + FE DIH VAA+IFGV ++ V+ RR AKT+NF +IYG+ Sbjct: 817 IELRVLAHFSRDPALLRAFEEDRDIHADVAAKIFGVALDSVTSDQRRMAKTVNFGVIYGL 876 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S LA++L I +SEAA +I YF ++P + ++ + R G VET+ GRR + I Sbjct: 877 SAHGLASRLGISQSEAAAFINAYFDQYPHVEAFMTRVLTQARDTGRVETLEGRRRAINGI 936 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 + RN+ ER AIN IQGSAAD+ +RAMI+V + L++ KL +M+LQIHDEL+FEV Sbjct: 937 KHVEGRHRNLAERTAINTVIQGSAADLIKRAMIAVDQRLKETKLPARMILQIHDELLFEV 996 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + +T ++++ +M A L PLKV++ NW Sbjct: 997 ERDALTETARLVQEAMIHAA----TLETPLKVDLAAGPNW 1032 >gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema pallidum] Length = 997 Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust. Identities = 331/1038 (31%), Positives = 540/1038 (52%), Gaps = 107/1038 (10%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 MQ++ L+L+D IYR+++A PL++ G V+A+ GF L LL + R Sbjct: 1 MQEKKTLYLLDAYGLIYRSYHAFARAPLINDS--GANVSAVYGFFRSLHTLLCHYRPR-- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +F +FD TFR+ YP YKA R K L Q+PL+ A GI + GFEA Sbjct: 57 --YFVAVFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCALGITVLRHDGFEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH---------V 168 DD+IAT E V IIS+DKD++QLV DTV+ ++DI+H V Sbjct: 115 DDLIATLAKRVAAEHCHVVIISSDKDVLQLVC------DTVQVLRLDIDHKWTCCDAAYV 168 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++W + P +++ L +L GDS DN+PG+ GIG KTAA LL +G L+ I + +K+ Sbjct: 169 QQRWTVMPTQLLDLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYRHTYSLKEAL 228 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 R + I+ + A SR L+ LR DVP LE + C P ++ + + ++ + Sbjct: 229 RTK-IVCGKKDAFFSRSLIELRDDVPCVFSLE----DSCCIPLDVTSAARIFVREGLHAL 283 Query: 289 ATTY-------DCDAAN-----IEPVVLDINTTENKGIAIETEIDRDT-----TIKTSQF 331 A Y D +A N E VL N+ + E T +K+ Sbjct: 284 AQQYRACVQEIDTEATNDTLQMTESSVLTSGRCANECFLSQVEGRASTPEVNSVLKSELK 343 Query: 332 SSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSAS 391 +S I + Q + L R + Y + + ++++ + G + Sbjct: 344 TSAVSGAIPIENRDLRQDVMLAR---------SAGHYRGVTDPVELKRIIDCACANGVVA 394 Query: 392 FKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT--SQDSTGKNT----- 444 F TD + ++ + +I ++ +F V I D+S+HT +Q + ++T Sbjct: 395 FDCETDGLHPHDTRLVGFSICF---QEAEAFYVPLIVPDVSLHTESTQCTCARSTNVETE 451 Query: 445 ------------------LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 + ++ L++ + +E + HN K+D V+HR G+ F Sbjct: 452 KECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHVMHRAGV----F 507 Query: 487 E-------DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536 E D M+ +++LD R ++ + +A + + T +E++ ++ + Sbjct: 508 EHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQT---FAHVPYE 564 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +A E++++ +L+ L+ +L LL V+E ++ P++ ++++ME GI + +D+++ Sbjct: 565 CAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQ 624 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 Q++ S + E +I+ L+G +FN+ SPKQL +LF +L P G K G + T Sbjct: 625 QLTRSFSDLIQQYEHDIFSLAGHEFNIGSPKQLQTVLFQELHLPPGKKNTQG-YSTDHSV 683 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 L+++ +PI + IL +R LSK++STY +SL + +T RVHT + T TGRL+S Sbjct: 684 LKKLA-RKHPIAEKILLFRDLSKLRSTYTESLAK-LADQTGRVHTSFVQIGTATGRLSSR 741 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQNIPIK+ G+KIR+AF + +LISADY+QIEL LAH+++ L F +D Sbjct: 742 NPNLQNIPIKSTEGRKIRQAFQATVGHELISADYTQIELVALAHLSQDRNLLNAFRQHID 801 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH + AA IF V+I+ V P MRR AKTINF I+YG+S FRL+ +L+I + EA +I RYF Sbjct: 802 IHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYF 861 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 +PG++ + + R+ GYV ++ GRR + I+S + R ER A+N IQ SA Sbjct: 862 ETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSA 921 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI++ ++ L ++LLQ+HDEL+FE P E +I+ ME A + Sbjct: 922 ADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHA----V 977 Query: 957 NLRVPLKVNIKVSNNWQE 974 L +PL+++++ N+W + Sbjct: 978 ELSIPLRIHVESGNSWGD 995 >gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271] gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271] Length = 905 Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust. Identities = 322/975 (33%), Positives = 515/975 (52%), Gaps = 88/975 (9%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG+S + RAFYA P L+ +GLP NA+ GF ML ++ +KE + V F Sbjct: 3 RLVIMDGNSLLNRAFYALPPLT-SAEGLPTNAVHGFLAMLLRI----QKEKKPDCWVVAF 57 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T R E+Y YKA R + PE L PQ ++ A +P +E +G+EADD+IAT T Sbjct: 58 DKTKATKRIEMYDQYKAQRKETPETLKPQFAYLKEILGAMSVPVLESEGYEADDLIATVT 117 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 AE EG + +I+ DKD QLVS T + T+K E + + + +K+ + PE+++ Sbjct: 118 RRAEAEGMEIIVITGDKDAFQLVSDQTTVEMTIKGISTVECYNKDKLFEKYQLKPEQIID 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L+ L GD DNIPGIPGIG KTA LL +G+LE +L N + K + + EY E A Sbjct: 178 LKGLMGDPSDNIPGIPGIGEKTALKLLWSFGSLEQVLENVDAVPGNKLKALLKEYPEQAL 237 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LS+KL + VPI + + + + + L + + T D D Sbjct: 238 LSKKLATMIDQVPIDFQIGDFVRTKPDSEKTLGLLHQYSLSMICRLFEQTLDQDQE---- 293 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 ++G A +++ RD + ++ ++Q S+ N E + SQ Sbjct: 294 -----GPARSRGPA-KSQDRRDNENGKNNRNNKNNQDSQDNQEDN----------RDSQ- 336 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI--AISTLDQKDD 419 SY + + D W++++ + + +++ + +++ + DQ++ Sbjct: 337 --AGPSYEERI--LDPGGWLEQISSWMTEKTELVISYRLEGEAAHLSVWNEMGICDQRN- 391 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 ++ ++ ID K +L+ + + KI + K L Sbjct: 392 -TYSLDRTQID----------------KNVLAKWHELLGSPRVFKIMADHKTLYSALANE 434 Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538 G+ + G + D+ L +Y+++ RSS+ A E+L + + ++ + Sbjct: 435 GVRLDGLKYDLSLAAYLMNPTRSSYQAA------------ELLSGQADELFFSAAREAGL 482 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 H ENS R KL L + L++P+ V+++ME GI +D+++L+Q+ Sbjct: 483 LAHEFENS----------RKKLEELGLSSLLHELEEPLSIVLAEMERQGISVDREMLEQI 532 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 E+ K + +EE+IY ++G FN++SP+QLG +LF +L+ P K KTG + T A+ LE Sbjct: 533 GFELEKKIAVIEEDIYQIAGVSFNINSPQQLGKVLFEQLELPPLKKIKTG-YSTDAETLE 591 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ G + I++ ILE+R L K+ STY L + R +VHT + T TGRL+S EP Sbjct: 592 EL-AGQHCIVEKILEFRHLVKLNSTYVKGLLGQL--RDGKVHTTFQQMVTATGRLSSTEP 648 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 NLQNIPI+ + G+K+R+ F+ S +L SADYSQIELR+LAH ++ L Q F+ D+ Sbjct: 649 NLQNIPIRMEEGRKLRKVFVPSRGGWELFSADYSQIELRVLAHYSQDPILCQSFQTGEDV 708 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H A+E+FGV +E+V+P MRR AK +NF ++YG++ F LA +RIPR EA YI+RYF Sbjct: 709 HARTASEVFGVPLEQVTPDMRRKAKAVNFGLMYGLTDFGLARDIRIPRKEAKFYIERYFQ 768 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+ G+ +Y+ + + G T+ R E+N ++R +R A+N+PIQG+AA Sbjct: 769 RYSGVKKYLNDSVVNAMETGETRTLLNRLRQTPELNHQNRTVRQFGQRIAMNSPIQGTAA 828 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AMI V ++++ L +LLQ+HDEL+ EV + +QI+ ME A L Sbjct: 829 DIMKLAMIRVDEAMKG--LEANLLLQVHDELLLEVSARALPEVAQIVKTEMESALL---- 882 Query: 958 LRVPLKVNIKVSNNW 972 L VPL+V+ K NW Sbjct: 883 LTVPLQVDCKTGVNW 897 >gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038] Length = 750 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 305/804 (37%), Positives = 464/804 (57%), Gaps = 73/804 (9%) Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAETA 240 GDS DNIPG+PG+G KTA LLQ G L+ + N +I K + + + A Sbjct: 2 GDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSAKLEQNKDVA 61 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS KL ++TDV + + + L + + +L EF + + A++E Sbjct: 62 YLSYKLATIKTDVELDVTCDELTVSPPDDKQLHQLFSRYEFKRWL-----------ADVE 110 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 G ++++ DR T +SQ S + ++ P E LSQ Sbjct: 111 -----------AGKWLDSKKDRPTGQTSSQ--------SFVAADTAPTA---EVTAVLSQ 148 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 ++Y I++ K + W+++L+ +F TD +D I + Sbjct: 149 -----ENYQTILDEKALADWIERLKAAEVFAFDTETDGLDTLSCNLIGM----------- 192 Query: 421 SFKV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476 SF V E ++ L+ H D+ + L ++ +L+ LK E++ LK+G N+K+DK +L Sbjct: 193 SFAVAPGEAAYLPLA-HDYLDAPPQ--LDRDWVLATLKPLLEDDKALKVGQNLKFDKSML 249 Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDK 532 RYGI ++G D ML SYVLDS HD+ S+A+++L++ T +EI K+ + ++ Sbjct: 250 ARYGIDLKGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQ 309 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQID 591 I+ Q +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E TG+ ID Sbjct: 310 IALEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLID 369 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 Q++L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G Sbjct: 370 QNILAAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQAILYEKQKLPILKKTPGGAAS 429 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + L ++ D P+ K ILE+R L+K+KSTY D LP IN + RVHT Y A T TG Sbjct: 430 TNEEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATG 488 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP++ + G++IR+AFI+P +++ADYSQIELRI+AH+++ L F Sbjct: 489 RLSSRDPNLQNIPVRNEEGRRIRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAF 548 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIHR AAE+FG +EKV+ + RR AK INF +IYG+S F LA QL IPR EA Y Sbjct: 549 AAGQDIHRATAAEVFGSPLEKVTTEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRY 608 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF R+PG+ EY+E+T+ + GYV T+ GRR++ +I+S ++ R ER AINAP Sbjct: 609 MDLYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAP 668 Query: 892 IQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 +QG+AADI +RAMI+V L+ + ++++Q+HDELVFEV E + +A Q I ME+ Sbjct: 669 MQGTAADIIKRAMIAVDGWLQQEPEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELMEQ 728 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 + + L VPLKV++ V NW + Sbjct: 729 S----MQLAVPLKVDVGVGANWDQ 748 >gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1] gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1] Length = 965 Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust. Identities = 340/996 (34%), Positives = 518/996 (52%), Gaps = 71/996 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG + YRAF+A R G P A+ GF + + N+ +E + AV F Sbjct: 8 LLLIDGHALAYRAFHALAEAGLRSSTGEPTYAVFGFTSAML----NAIEEYHPDYAAVAF 63 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+++Y +YKANR + P QL ++ AF IP G+EADD+I T Sbjct: 64 DV-GKTFRDDLYAEYKANRAETPAEFEQQLERIKQVLAAFDIPIYTADGYEADDVIGTLA 122 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKEEK----IDIEHVIKKW-GIPPE 177 A + G V I++ D D +QLV T L + V+ K + V ++ G+ P+ Sbjct: 123 RQATERGVDVLILTGDTDTLQLVDEHVTVLLNNPYVRGSKNTTRYGVADVCARYKGLRPD 182 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 ++ L+ L GD DNIPG+ GIG A LL ++G++EN+ + + KR + LE Sbjct: 183 QLADLRGLKGDPSDNIPGVKGIGEAGAIALLNQFGSIENLYDHLD--EAPKRYQKHLEGQ 240 Query: 238 ETARL-SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCD 295 A L S+KL + D P+T+ L L D + R+I+ + LEF L+ R+ + Sbjct: 241 RDAALFSKKLATIVRDAPVTLDLPAATLADYDRSRVIAVFQELEFGASLVRRLPPSQTIA 300 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 A P V + A T D + + F N TP +E Sbjct: 301 APQALPPVEPPAPLQVDMFAPATPGPDDGPQQLTLF----------NDMPTPVAPVVE-- 348 Query: 356 QKLSQYPINNDS---YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 P +D+ Y N D++ V +L+ +F T + + IA++ Sbjct: 349 ------PPAHDAPGEYRAACNDADLEAIVTELKHASLFAFDTETRGTNPLRDDLVGIALA 402 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKY 471 T+ ++ L HT TG+ L +E +++ L+ FF + +I HN K+ Sbjct: 403 TIPGSG--------WYVPLG-HT----TGEAQLPRERVIAALRPFFADPARSRIAHNAKF 449 Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA----SIAQKWLSYTRKEILKSRKS 526 D VL R GI + G D ML + +LD R+ D+A ++A S + ++ K+ Sbjct: 450 DIEVLERAGIPVAGVAFDTMLAAALLDKRRNLKDLAFYELNLAAPLESI--EALIGKGKN 507 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEI 585 + + ++ +A ++++ L+L L KL + V+ RL+ P++ V+ +ME Sbjct: 508 QVTFADVPIARATPYAAADADMTLRLKPALEAKLRAAGSVADVFYRLEMPLVPVLVRMEQ 567 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT-KLKFPSGA- 643 GI +D ++ + + + L +E+ IY ++G+ FN++S QL ++LF K+ P+ Sbjct: 568 AGILLDVPYMRALGERMGRELEQIEQQIYAIAGQTFNINSGDQLSEVLFGPKINLPTTGL 627 Query: 644 -KTKTGQWKTTAQDLEQINCGDN-PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +T+TG++ TAQ LE++ D II+ IL R+LSK+KSTY D LP +N T RVHT Sbjct: 628 DRTRTGRYSLTAQALEELQASDTTGIIELILRHRRLSKLKSTYVDELPALVNPETGRVHT 687 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 Y+ TGRL+S PNLQNIP +T+ G+++RR FI+ P LI+ADYSQIELR+LAH+ Sbjct: 688 DYNQLGAATGRLSSNSPNLQNIPTRTEEGREVRRGFIAAPGHLLIAADYSQIELRVLAHM 747 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 L Q F DIH AA +FGV V RR AKT+ F +IYGISPF LA +L Sbjct: 748 TGDPNLIQTFIEGRDIHAATAARLFGVGFSAVDKNQRRIAKTVVFGVIYGISPFGLAQRL 807 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG-RRIHYD-EINSPKSSI 879 I R +A I F +FP I +YI++T + R GYV+++FG RR +D ++ P+ Sbjct: 808 GISREQARGLIDSLFDQFPRIRDYIDRTLDIGRSEGYVQSLFGRRRPMFDLRVSGPR--- 864 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN PIQ +AADI + AMI+V L+ ++ T+MLLQ+HDEL+FE PE E+ Sbjct: 865 RQAAEREAINHPIQSTAADIMKLAMIAVDAELQRRQMRTRMLLQVHDELIFEAPEAEVDD 924 Query: 940 ASQIIVHSMEKACLP-KINLRVPLKVNIKVSNNWQE 974 ++ ME + VPL+V I+ NW+E Sbjct: 925 VVALVRERMEGVLHGMEPPFAVPLRVEIETGPNWEE 960 >gi|153814488|ref|ZP_01967156.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756] gi|317500531|ref|ZP_07958753.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA] gi|331089370|ref|ZP_08338270.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847982|gb|EDK24900.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756] gi|316898041|gb|EFV20090.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA] gi|330405433|gb|EGG84968.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium 3_1_46FAA] Length = 871 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 318/982 (32%), Positives = 504/982 (51%), Gaps = 131/982 (13%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ +GL NA+ GF N+++K+L + E + V FD Sbjct: 5 IVLIDGHSILNRAFYGVPDLTTP-EGLHTNAVYGFLNIMFKILDEEKPE----YLTVTFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+E++ +YK R + E L Q+P+++ +A I IE G EADD++ T + Sbjct: 60 VHAPTFRHEMFSEYKGTRKPMAEELRQQVPVIKEVLEAMNISTIEKAGLEADDLLGTLSR 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180 + E+ G V+IIS D+D +QL + + K+ K +IE+ V++++ + P + + Sbjct: 120 MCEESGMDVSIISGDRDTLQLATEHVKIRIPKTKQGKTEIENYYAADVVERYKVTPREFI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++AL GDS DNIPG+PGIG KTA ++ EY +EN +AS +K + +NI E+ E A Sbjct: 180 DVKALMGDSADNIPGVPGIGEKTATKIIMEYQTIENAYAHASELKPPRASKNIQEFWEQA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 ++S+ L + T +E E+ + L F ++ R Sbjct: 240 KMSKVLATIETHADFEFDIEKAHYENPYTEEAYKIFERLRFKNMLGR------------- 286 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 I T ENK IE +I R+ T K +ER+ +++ Sbjct: 287 ---FSIETKENK---IE-KIFREVTEKEE----------------------IERIFAMAE 317 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP-----IAIAISTLD 415 K + +G A K + + F + P IAIA S D Sbjct: 318 ----------------------KAQCVGVALSKDEGNVLPLF-AHPSGFGRIAIAWSEKD 354 Query: 416 QKD---DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 D S +E +F LS + S KEIL Y+K ++ F Sbjct: 355 VVTIPCDLSTDMEFLFAKLSHVAEKVSCFSVCGLKEILPYIKNVKQSSAF---------- 404 Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532 D+++ +Y+L+ +S + +A+++L I Sbjct: 405 ---------------DVIVAAYLLNPLKSDYTYEDVAEQYLG---------------IAG 434 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 +++ + +L KL ++ ++ ++ P++ + +ME G++++ Sbjct: 435 GIQAELNVKCCYEAYTAFAAASVLDNKLKEAEMDRLFYEIEMPLVFTLYEMESAGVKVEA 494 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 + LK ++ + ++ LE IY+++GE+FN++SPKQLG ILF KL P KTKTG + T Sbjct: 495 EALKLYGDQLGEQIIQLEHQIYEMAGEEFNINSPKQLGVILFEKLNMPHAKKTKTG-YST 553 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A LE++ + PI+ ILE+RQL+K+KSTYAD L I R+H ++ T TGR Sbjct: 554 AADVLEKL-AEEYPIVSKILEYRQLAKLKSTYADGLAVFIGD-DGRIHGKFNQTVTATGR 611 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S EPNLQNIP++ +LG+ IR+ F+ + ADYSQIELR+LAH + L + + Sbjct: 612 LSSTEPNLQNIPVRMELGRMIRKVFVPKEDCVFVDADYSQIELRVLAHCSGDEQLIKAYR 671 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIHRM A+++F ++V+ RR+AK +NF I+YGIS F L+ L I R EAA+YI Sbjct: 672 EATDIHRMTASQVFHTPFDEVTDLQRRNAKAVNFGIVYGISSFGLSMDLSITRKEAAEYI 731 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 + YF +PG+ ++++ + ++ GY T+FGRR E+ S RN ER A+NAPI Sbjct: 732 EHYFETYPGVKKFLDDSVENAKEKGYAVTLFGRRRPVPELKSSNFMQRNFGERVAMNAPI 791 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI + AMI VHK L+ + ++M+LQ+HDEL+ E E+ +I+ ME A Sbjct: 792 QGTAADIMKIAMIDVHKELKKRNMKSRMILQVHDELLIEAECSEVDEVKEILRDKMENA- 850 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + L VPL V++ NW E Sbjct: 851 ---VKLSVPLIVDMHTGKNWYE 869 >gi|325479001|gb|EGC82102.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13] Length = 878 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 314/976 (32%), Positives = 510/976 (52%), Gaps = 112/976 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DGSS I+RAF+A P L+ +DG+ N + GF M N+ + V FD Sbjct: 5 VMLIDGSSLIFRAFFALPKLTN-NDGVMTNGVYGFLTMY----NNAVDRYKPDYILVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFR++ + DYKA R K+P L Q +++ + G+ ++ GFEADDI+ TY Sbjct: 60 RASKTFRHKEFKDYKATRDKMPSELSYQFGILKDILDSMGVKYTDLDGFEADDIVGTYAK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCL 182 +A+++G+ +I+ D+D +QLV + T K ++ +E + +++G+ P++++ + Sbjct: 120 MAKEKGYNSVLITGDRDYLQLVDENIVVNLTKKGVSETKEYTVETIKEEFGLTPKQLIDV 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+ GIG K A +Q+YG++E + N + KK +EN++ A + Sbjct: 180 KGLEGDKSDNIPGVDGIGPKKAIGFIQKYGSIEGLYENIDEVSGKKTKENLINSEAIAYM 239 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S+K+ + T P+ LE + L + + L F K + D D N Sbjct: 240 SKKIGTIVTSAPVEYDLEEIKLGEVDEKSLREKFSKYNFNKFLE------DMDGGN---- 289 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 I+ +F+ +KL +YP Sbjct: 290 ----------------------PIEAKEFT----------------------YEKLEEYP 305 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + V++++ +FK+I D HS IAI T K ++ Sbjct: 306 ----------------KLVEEIKKEKEFTFKVIYDGDRYIHSNAYKIAIKT---KKSPTY 346 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI- 481 E ++ ++ +K+ FE+E LK +IK D ++L + GI Sbjct: 347 IAEP-------------------DEDFVTNMKEIFEDEKILKNSFDIKEDLVLLAKLGID 387 Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 ++DIMLM Y++D RSS+D+ +++Q +L Y +++L K ++ + + ++ Sbjct: 388 GALPYDDIMLMHYLIDPSRSSYDMKTLSQSYLDYEVNNPEDLLGKGKKALKYEDLDFDKL 447 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 N I L KL + +Y+ ++ + V++ MEI G D+ +L+++ Sbjct: 448 GNFMASEINAIYDAKDKLVDKLNEYHMYDLYKEIEIELSKVLADMEIVGFVTDRKVLEEL 507 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 I ++ L + IY+LSG +FN++S KQLG++LF L+ P KTKTG + T A LE Sbjct: 508 KEGIDADIDELTQEIYELSGSEFNINSTKQLGEVLFKDLELPVIKKTKTG-FSTDASVLE 566 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ + II I +R+L K++STY + L I+ R+ + + TGRL+S +P Sbjct: 567 KLR-DKHQIIPKIERYRELFKLRSTYIEGLEKAID-YDGRIRSTFRQNIAATGRLSSQDP 624 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQN+PIKTD G+ IR+AF + K LI ADYSQIELRILA ++ + F N DIH Sbjct: 625 NLQNLPIKTDEGRLIRKAFKAEEGKILIDADYSQIELRILASLSGDEHMIDAFINVDDIH 684 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R A+++F +E+V+ + R AK +NF IIYGIS + L+ L I R EA +YI Y Sbjct: 685 RKTASKVFHTPLEEVTKRQRSEAKAVNFGIIYGISDYGLSQNLNISRKEAKEYIDNYMAS 744 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +P I EY++ +++GYVET+F RR + EINS ++R+ +R A+N PIQG+AAD Sbjct: 745 YPSIKEYMDSIVEKAKEDGYVETLFKRRRYVPEINSRNFNVRSFGQRVALNTPIQGTAAD 804 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I + AMI +K+L+ K+ K++LQIHDE++ E +E+ A +I+ SME A NL Sbjct: 805 IIKIAMIETYKNLKKEKIDAKIILQIHDEIILEASKEDEDRAIEILRESMESAA----NL 860 Query: 959 RVPLKVNIKVSNNWQE 974 VPL V+I ++ E Sbjct: 861 EVPLIVDIDTGDSMYE 876 >gi|78188162|ref|YP_378500.1| DNA polymerase A [Chlorobium chlorochromatii CaD3] gi|78170361|gb|ABB27457.1| DNA polymerase A [Chlorobium chlorochromatii CaD3] Length = 924 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 328/976 (33%), Positives = 509/976 (52%), Gaps = 70/976 (7%) Query: 14 SFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPA 69 + +YRAF+A L R GLP A+ GF L K+ +N + FD Sbjct: 2 AMLYRAFFA---LQRTGMSSPSGLPTGALYGFTTALLKIFENYHPH----YLVAAFDSRE 54 Query: 70 VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII-ATYTYIA 128 TFR+ + YKANR PE LL QL + +AFG+P I+ G+EADD+I A T A Sbjct: 55 KTFRHHLLESYKANRAAPPEELLQQLEKLFELLKAFGVPVIKQAGYEADDLIGAMVTQFA 114 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQA 184 + + I++ DKDL QLV + K E + V +G+PP++ Sbjct: 115 DV--CRIGIVTPDKDLAQLVREGVQILKPGKNQHELEPLGCNEVKAHFGVPPKQFTNFLT 172 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 LTGD+ DNI G GIG KTAA LL++Y L+ + + + K R+ ++ ++A L Sbjct: 173 LTGDTSDNIVGAKGIGPKTAATLLEKYQTLDKLYQHLDELTPKVRK-SLEDFAPNRELVL 231 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 +LV + D P+ + LE L ++ ++ L+ L F + AA ++ + Sbjct: 232 QLVTICCDAPLHVTLEELACKNPARDVVLPLLQELGFRTI-----------AARLQAASV 280 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 + N G + D +S + SD + P +P Sbjct: 281 ALTCACNDGGESAPPMQSDP--NSSNLLNGSDGNTSATDTAPP-----------PSFPDV 327 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 YT + + +Q +++L+ + + T ++D F ++ I++ K Sbjct: 328 PRHYTLVETREQLQALLEELQQVTHIAVDTETTSLDVFEAELAGISLCAEAGK------- 380 Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 FI T+ D+ + KE++ LK EN K G N+KYD LVL +YGI + Sbjct: 381 -AFFI----ATTPDALER----KEVVKQLKPLLENPAITKSGQNLKYDMLVLKKYGIELA 431 Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQE 540 D ML SYVL+ H++ +A ++L T E+ + K I ++ + Sbjct: 432 PISFDTMLASYVLNPDEH-HNLDDMALRYLGRTTTKYDELTGTGKQRRHIFEVEKEALTN 490 Query: 541 HAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A ++++V QL +L+ +L E +LL + ++ P++ V++ ME GI ID + L +V+ Sbjct: 491 YACQDADVAFQLEEVLQAQLQAEPQLLALCTTMEFPLVRVLATMEYAGIAIDTEHLARVA 550 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 L SL +NIY +G FN+ SPKQL +LFT L P+G TKTG + T LE+ Sbjct: 551 ETTELELQSLTDNIYAAAGSSFNIDSPKQLSHVLFTDLSLPTGKSTKTG-FSTDVGVLEE 609 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + PI ++L +R L K+K TY ++LP IN RT R+HT ++ T TGRL+S PN Sbjct: 610 L-AATYPIASDLLSYRTLQKLKGTYIEALPKIINPRTGRIHTSFNQHITATGRLSSSNPN 668 Query: 720 LQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 LQNIP++T LG++IRRAFI S P L+SADYSQIELRI A ++ L F N DIH Sbjct: 669 LQNIPVRTALGKEIRRAFIPSTPEHWLLSADYSQIELRIAAELSGDERLIAAFRNGEDIH 728 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 A IFG E++S MRR AK +NF ++YGI PF LA +L IP+ EA I+ Y + Sbjct: 729 TATAQVIFGT--EEISSDMRRKAKEVNFGVLYGIQPFGLAKRLNIPQKEAKVIIETYKAK 786 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +P + + ++ GYV T+ GRR + ++NS +++ ERAA+N PIQG+AAD Sbjct: 787 YPQLFNVLRHIIEEGKEKGYVTTLLGRRRYIADLNSRNGTVQKAAERAAMNTPIQGTAAD 846 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I + AM ++ ++ +A++MLLQ+HDEL+FE + E ++++ ++M++A + Sbjct: 847 IIKCAMNLCYQQMQASGMASEMLLQVHDELLFETTDSEKEALTKLVENAMKEAAVLCGMK 906 Query: 959 RVPLKVNIKVSNNWQE 974 +VP++V+ V NW E Sbjct: 907 QVPVEVDCGVGKNWLE 922 >gi|330972146|gb|EGH72212.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT] Length = 822 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 304/893 (34%), Positives = 477/893 (53%), Gaps = 97/893 (10%) Query: 106 GIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI 165 G P + ++G EADD+I T + V I + DKD+ QLV L +T+ +D+ Sbjct: 1 GYPFLCVEGVEADDVIGTLARSSAAADRPVVIPTGDKDMAQLVDGHITLVNTMTGSVLDV 60 Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE--------YGNLENI 217 V +K+G+ PE ++ AL GD +DNIPG+PG+G KTA LL Y NL+ + Sbjct: 61 AGVKEKFGVGPEHIIDYLALMGDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKV 120 Query: 218 LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277 R K + E+ E A LS +L ++ DVP+ I L+ L C P Sbjct: 121 ASLPIR-GAKTLAAKLEEHREMAFLSYELATIKIDVPLDIELDQL---HCGEP------- 169 Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSL 334 DRDT ++ +F S Sbjct: 170 -------------------------------------------DRDTLMELYAELEFKSW 186 Query: 335 SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394 + + ++++ Q+L +E ++ +Y I+ W++KL+ +F Sbjct: 187 IEDLQR-DAKRAGQELTIEEPTAEAR----EAAYEVILEQGQFDAWLKKLQAAPLFAFVT 241 Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454 ++ DA ++ + ++ + + + + ++ + +D+ +L LK Sbjct: 242 QSNGTDAQRAQLVGLSFA-IQTHEAAYIPLTHSYMGVPQQLDRDT---------VLKALK 291 Query: 455 KFFENEHFLKIGHNIKYDKLVL--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505 E+ +K+G + K+ +L GI ++G D +L SYVLDS + HD Sbjct: 292 PLLEDPDKIKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDR 351 Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI- 561 S+ K+L++T +EI + D+I+ Q +A E +++ L+L + +L Sbjct: 352 DSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAA 411 Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 + L V ++ P++ V++++E G +D +LL S E+ + +LE + ++GE+F Sbjct: 412 IPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF 471 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 NL SPKQLG IL+ KL P +KT TGQ T L ++ D P+ K ++++R +SK+K Sbjct: 472 NLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLK 531 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 STY D LP IN RT R+HT Y A +TGRL+S +PNLQNIPI+T G++IR+AF++P Sbjct: 532 STYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPK 591 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 KL++ADYSQIELRI+AH+A+ L F N LD+HR AAE+FGV +E V+ MRR A Sbjct: 592 GYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSA 651 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K INF +IYG+S F LA Q+ + R ++ Y+ RYF R+PG+ Y+E+T+ + G+VET Sbjct: 652 KAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVET 711 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 IFGRR++ +IN+ S+R ER AINAP+QG+AADI ++AM++V+ L++ L +++ Sbjct: 712 IFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVI 771 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LQ+HDELV EV E+ + S+ I M A L VPL V + V NNW E Sbjct: 772 LQVHDELVLEVREDLVDQISEQIRPHMSGAA----ELAVPLLVEVGVGNNWDE 820 >gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] Length = 607 Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust. Identities = 249/613 (40%), Positives = 383/613 (62%), Gaps = 20/613 (3%) Query: 372 VNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430 +NT + + W+ + G +F T ++D ++ + ++++ + + I + Sbjct: 3 INTPEMLADWIDAIRAQGYVAFDTETTSLDEMQAELVGVSLALV------PGRAAYIPLG 56 Query: 431 LSVHTSQDSTGKNTLTKE------ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 + D N LT+ +L+ L+ E+ LKIG NIKYD ++ RYG+ + Sbjct: 57 HRMAAGDDLFADNRLTEGQLPLEVVLNALRPVLEDPAVLKIGQNIKYDVKIMARYGVHLA 116 Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEH 541 +D ML+SY L +G +H + +++++L++ KE++ S KS++ D + + + Sbjct: 117 PVDDTMLLSYALHAGLHNHGMDELSERYLNHRPIPIKELIGSGKSAVTFDHVPVEKAVAY 176 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 A E++++ L+LW +P+L ++ VYE L++P+I V+++ME+ G+Q+D+D L ++S Sbjct: 177 AAEDADITLRLWQHFKPQLPQSRVTTVYETLERPLIPVLTRMEMAGVQVDRDTLSRMSNA 236 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 ++ ++ LEE I+ +G FN+ SPKQLG+ILF ++ F G K K G W T A LE + Sbjct: 237 FAQKMVQLEEEIHAAAGRSFNVGSPKQLGEILFDEMGFQGGVKGKNGAWGTGADVLEDLA 296 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 ++ + IL+WRQ++K+KSTY D+L +HIN + RVHT YS+A TGRLAS +PNLQ Sbjct: 297 T-EHALPGLILDWRQVAKLKSTYTDALQDHINPDSGRVHTSYSIAGANTGRLASTDPNLQ 355 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T+ G++IR AF++P K L+S DYSQIELRILA IA+I L + F+ LDIH Sbjct: 356 NIPVRTEEGRRIRGAFVAPAGKVLVSLDYSQIELRILAQIAQIDALKEAFQQGLDIHAAT 415 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A+E+F V +++++P++RR AK INF +IYGIS F LA LRIPR A +I RYF RFPG Sbjct: 416 ASEMFNVPLDQMTPEIRRQAKAINFGVIYGISAFGLARNLRIPRDRAQGFIDRYFERFPG 475 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I Y+++T F ++NG+V T+FGRRI+ EIN+ K RAAINAPIQG+AADI R Sbjct: 476 IRAYMDQTIAFAKENGHVRTLFGRRINTPEINA-KGPHAGFARRAAINAPIQGTAADIIR 534 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 RAMI + ++ L +MLLQ+HDEL+FEV E + I ME A P ++L + Sbjct: 535 RAMIQMDPAIA--HLPARMLLQVHDELLFEVEENAADELTAIAKRIMEGAADPAVHLDIK 592 Query: 962 LKVNIKVSNNWQE 974 L V+ NW E Sbjct: 593 LVVDAGRGQNWAE 605 >gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6] gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6] Length = 951 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 324/1003 (32%), Positives = 510/1003 (50%), Gaps = 83/1003 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M + L LVDG + +RAF+A + R G P A+ GF +L ++Q E + Sbjct: 1 MTHTHRLVLVDGHALAFRAFHALKESNLRSSRGEPTYAVYGFAQILLSMIQ----EQQPT 56 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + + FD TFR+++Y +YKA R + PE PQL ++ + IP +GFEADD Sbjct: 57 YVVIAFDV-GRTFRDDLYAEYKAGRAETPEEFHPQLVRIQELCRTLNIPIATAEGFEADD 115 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSP--------------TTCLYDTVKEEKIDI 165 +I T +A EG I++ D D +QLV+ TT +YD K + Sbjct: 116 VIGTLARLASAEGLETLILTGDTDALQLVNAQVRVILANPYGQKTTTTIYDEAKVRE--- 172 Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225 + G+ P ++ L+ L GD+ DNIPG+ GIG K A LL ++G +EN+ + + Sbjct: 173 ----RYQGLGPHQLADLRGLKGDASDNIPGVRGIGEKGAISLLNQFGTVENLFDHLPEVP 228 Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 K+ ++ + E A S+KL + DVP+ + L + D + +I + LEF Sbjct: 229 -KRYQKPLDGQREVALFSKKLATIVADVPVQLDLAAAAIHDYDRAAVIRLFQELEF---- 283 Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345 + I+ + + T +E + + +Q S + + Sbjct: 284 -------GASSGLIKKLPEPPSPTPLPLFGVELPSSLEDSSAPTQLSFFA--------AE 328 Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405 TP R L +Y I + ++ Q L +F + F S+ Sbjct: 329 TPAPPVATR-SALGEY-------RSITTSSELADLTQALAAAPGFAFDTEASGLRPFASQ 380 Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465 I+++ +++ S+G E+++ L FF + + K Sbjct: 381 LCGISLALSPGS--------AVYVPCG-----HSSGAQLSLAEVVAALGPFFADPNKAKY 427 Query: 466 GHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-QKWLSYTRKEILKS 523 HN K+D +L GI ++G D M+ + +L D+A Q T E L Sbjct: 428 AHNAKFDIEMLLGVGIEVQGLAFDTMIAAALLGKRAGLKDLAFYELQLPDPMTPIEDLIG 487 Query: 524 RKS-SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVS 581 R + I ++ + +A ++++ L+L L P+L LH +Y RL+ P++ V+ Sbjct: 488 RGTKQISFAQVPIERATPYAAADADMTLRLVHALEPQLATTPKLHDLYRRLELPLVHVLV 547 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 QME GI +D+ ++ + + + ++E+ IY ++ FN++S QL DILF K+ + Sbjct: 548 QMEQAGIALDKPYIEYLGQRMGTRIAAIEQEIYQIAEGPFNINSSDQLSDILFGKIGLST 607 Query: 642 GA---KTKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 KT ++ TA LE++ D + I + ILE+R+LSK+KSTY D+LP +N RT Sbjct: 608 EGVERTAKTKKYSITADTLERLRERDTSGICERILEYRRLSKLKSTYVDALPALVNPRTG 667 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 RVHT Y+ TGRL+S +PNLQNIP++T G++IRR F++ P + I+ADYSQIELR+ Sbjct: 668 RVHTTYNQVGAATGRLSSNDPNLQNIPVRTQEGREIRRGFVAAPGHRFIAADYSQIELRV 727 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 LA+I K L + F+ DIH AA++FGV I++V + RR AKT+ F +IYGIS F L Sbjct: 728 LAYITKDPNLVRAFQEGQDIHAATAAQLFGVAIDQVDKEQRRIAKTVVFGVIYGISAFGL 787 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 A + + RSEA D I F RFPGI +YI +T + G V+TIFGR+ E+ S + Sbjct: 788 AQRTEMGRSEAQDLINSLFTRFPGIRDYINRTLEQGQTTGVVQTIFGRQRAMPELQS-RG 846 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 R ER AINAPIQG+AADI + AMI + ++L + L T++LLQ+HDEL+ E PEEE+ Sbjct: 847 PRRAAAEREAINAPIQGTAADIMKIAMIKMARALSERGLRTRLLLQVHDELILEAPEEEV 906 Query: 938 TTASQIIVHSMEKAC------LPKINLRVPLKVNIKVSNNWQE 974 ++++ M A + VPL V++++ NW+E Sbjct: 907 ALVAELVREVMAGAYSLAWHDQEGQSHHVPLGVDVEIGPNWEE 949 >gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] Length = 937 Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust. Identities = 332/987 (33%), Positives = 533/987 (54%), Gaps = 80/987 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D S IYRA++A TP K G +A+ GF N L ++++ + + + AV Sbjct: 10 LFLLDASMLIYRAYFAFIHTPRFDSK--GNNTSALLGFANSLIEIIKKEKPD----YLAV 63 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD +FR+ Y YKA R PE +L P V+ +A IPAIE+ +EADD++ T Sbjct: 64 IFDPEGGSFRHREYTAYKAQRDATPEGILWAFPQVKRLLEALRIPAIEVPDYEADDVVGT 123 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--DTVKEEKIDIEHVIKKWG-IPPEKMV 180 + AEKEGF V +++ DKD QLV+ +Y T E V +K+G + +MV Sbjct: 124 LSQRAEKEGFEVYMVTADKDYGQLVTEHALMYRPGTKGAEVWGEAEVCEKFGLVHCSQMV 183 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI------LINASRIKQKKRRENIL 234 AL GD+ DNIPG GIG K A+ LL ++G+++ I L + + K ++ REN L Sbjct: 184 DYLALVGDASDNIPGCKGIGPKKASELLTQFGSIDAIYEHLDELSPSLKKKLEEGRENTL 243 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 LSR L + T+VP+ + E + N P+L + L E L R+ Sbjct: 244 -------LSRYLAKICTEVPMEVEWETFRHLEPNVPQLRALLAEFEMHTLAKRLLP---- 292 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 N+G A + ++ TSQ + S+ NS +P++ Sbjct: 293 ----------------NEGEAADWGGGLFSSSSTSQ--DEGKEPSEANSLFSPERT--AS 332 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQ--WVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 LQ L+ +Y +V TK+ Q+ W + E S F T+T D + +I ++ Sbjct: 333 LQGLTTLKDTAHTY-HVVRTKEEQKQLWARLAE---SKQFAFDTET-DGLNPLTASIVVA 387 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 + ++ E ++ L + IL L N LK+ N K+D Sbjct: 388 SFAPEEG-----EAYYLPLPQDFDEACA--------ILQPLDALMRNSEILKMAQNAKFD 434 Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT--RKEILKSRKSSIPI 530 + +L RYG+S L+++ L + H++ ++A+++L Y L +K+ Sbjct: 435 QKLLARYGVSSATPLFDTLVAHYLIAPDQRHNLDTLAEQYLGYRTIAYSDLSEKKNFDLR 494 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 +++ + ++A E+++V+ +L+ LLR KL E+ ++ ++ P++ V+ +ME G+Q+ Sbjct: 495 RDVAEELLVDYAAEDADVVRRLYPLLREKLEQEQQEKLFWEVEMPLVGVLERMEREGVQL 554 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS-GAKTKTGQ 649 D L +VS +++ +L E+ I+ +G FN+SSPKQ+G +LF +L + G KTKT Sbjct: 555 DVQRLHEVSEKLTNDLRETEDAIFHWAGHSFNVSSPKQVGVVLFEELGLHAKGKKTKTNT 614 Query: 650 WKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T+ + L + C D +PI++ IL++R L K+ TY ++LP + R+ T Y+ A T Sbjct: 615 YSTSEEVLSK--CVDQHPIVQKILDYRGLKKLIGTYTEALPELVYP-DGRLRTSYNQAVT 671 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPL 767 +TGRL+S +PNLQNIPI++ +GQ+IR AF+ ++ +SADYSQIELR++AH ++ L Sbjct: 672 VTGRLSSSDPNLQNIPIRSAMGQEIRSAFVPRSSEFTFLSADYSQIELRLMAHFSQDEHL 731 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F D+HR AA I+ V E+V+P R HAKT NF IIYGIS + L+ +L I SE Sbjct: 732 IKAFVEGEDVHRSTAARIYNVAPEEVTPLQRSHAKTANFGIIYGISAYGLSQRLNIDPSE 791 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A+ I YF +P + Y+++ R+ GY ET+ GRR + +INS +++R ER A Sbjct: 792 ASSLISSYFENYPAVRAYMDECVQKARKLGYTETLLGRRRYLPDINSRSATVRQFAERNA 851 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +NAPIQG+AAD+ + AMI + + + + ++M++Q+HDEL F+ E+ ++ Sbjct: 852 VNAPIQGTAADLIKVAMIRIDAKMRERNMKSRMIMQVHDELNFDAYLPEVDELRALVHQE 911 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M C NLRVPL+V I V ++W E Sbjct: 912 M---CQAIPNLRVPLEVEIGVGSSWLE 935 >gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273] gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273] Length = 945 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 331/981 (33%), Positives = 518/981 (52%), Gaps = 81/981 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LF++DG + +YRA++A K DG P A+ GF + L ++ ++ + A F Sbjct: 31 LFIIDGMALLYRAYFALLRAGMKTRDGRPTGALYGFMSTLLRIFESYHPR----YLAAAF 86 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATY 124 D TFR++I+P+YKANR PE + Q+ PL L +A GIP + GFEADD+I T Sbjct: 87 DSREKTFRHDIFPEYKANRTAPPEEMTGQIEPLFEL-LRALGIPILRTPGFEADDLIGTA 145 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPEKMV 180 E + ++ I++ DKDL QLV L K + + V +++G+PPE+ Sbjct: 146 AKEFE-DACSIYIVTPDKDLAQLVHDGVKLLRPSKNQNELQLMGPREVEEQFGVPPEQFT 204 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 LTGD+ DNIPG GIG KTA LL +G+LE + + + K R+ ++ + Sbjct: 205 AFLTLTGDTSDNIPGAEGIGPKTATSLLARFGSLEEVYRHIEELTPKVRK-SLEAFRPRL 263 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +L LV +RTD+ + + LE L + L+ L LE + +R+ + Sbjct: 264 QLITDLVTIRTDLALHVTLEELRCTTPDRHELLELLGKLELRSIASRLPAAF-------- 315 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 G+A+E S D +E+T + ++L Sbjct: 316 -----------PGLAVE--------------SPAGDPARTAGAEKTAAET-----EELGD 345 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 + D Y I ++++V+++ + T ++D F ++ I+IS K Sbjct: 346 PRLGAD-YGMIATEDLLREFVREMLQTDKIAVDTETTSLDTFEAELAGISISAEPAK--- 401 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 FI + G + L+ EN K G N+KYD LVL YG Sbjct: 402 -----ARFISFA--------GTGLDRGRSIEILRPLLENPAIPKTGQNLKYDILVLKNYG 448 Query: 481 ISMR--GFEDIMLMSYVLD-SGRSS-HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536 + + GF D ML SYVLD G+ + D+A++ + + E+ + K+ + I + + Sbjct: 449 LELGPVGF-DTMLASYVLDPDGKHNLDDMAALHLRLKTTKYDELTGTGKNRLHIYDVEPA 507 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 ++ ++A +++++ LQL L E +L+ + + ++ P++ V+++ME GI ID L Sbjct: 508 KLTDYACQDADLALQLEGAFTRNLEAEPRLMELCQTIEFPLVSVLAKMEHQGISIDSKHL 567 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 ++ S + L SL E I+ +G FN+ SPKQL ILF L P+ TKTG + T + Sbjct: 568 EETSMAVGHQLESLRETIHAAAGTDFNIDSPKQLSHILFNVLGLPTKKTTKTG-FSTNVE 626 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ +P++ ++L +R L K+K+TY D+LP +N RT RVHT ++ T TGRL+S Sbjct: 627 VLEEL-APLHPVVSDLLLYRSLQKLKTTYIDALPKMVNPRTGRVHTSFNQHVTATGRLSS 685 Query: 716 LEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 PNLQNIPI+T LG++IR+AFI + P L+SADYSQIELRI A I+ L + F N Sbjct: 686 SNPNLQNIPIRTPLGREIRKAFIPTNPANWLLSADYSQIELRIAAEISGDPKLIEAFRNG 745 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 LDIH A IF + E ++ MRR AK +NF ++YGI PF L+ +L IPR+EA + I Sbjct: 746 LDIHAETARVIF--DTEDITADMRRKAKEVNFGVLYGIQPFGLSKRLNIPRNEAREIIDT 803 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 Y ++PG+ +E R+NG+V T+ GRR + ++ S S+++ ERAA+N PIQG Sbjct: 804 YREKYPGLFSSLEGVIEEGRKNGFVTTLLGRRRYLRDLTSRNSNVQKAAERAAMNTPIQG 863 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM-EKACL 953 +AADI + AM + ++ + + MLLQ+HDELVFE E+E ++ +M E A L Sbjct: 864 TAADIIKCAMNLCSRRIDAASMQSVMLLQVHDELVFETTEDEKEGLKSLVEEAMIEAAAL 923 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 + VP+ V+ + NW E Sbjct: 924 CGLK-NVPVAVDTGIGKNWLE 943 >gi|71892386|ref|YP_278120.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796492|gb|AAZ41243.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 936 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 337/989 (34%), Positives = 521/989 (52%), Gaps = 80/989 (8%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N + LVDGS +I+RA++A P L DG PV I G NM+ LL + +H V+ Sbjct: 7 NPIILVDGSCYIHRAYHAFPELITS-DGKPVWVIYGVINMIKSLLIRYQ----PTHMVVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRN ++ YKANR K P+ L Q+ PL + QA G+ +++ EADD+I T Sbjct: 62 FDAMGKTFRNNLFEKYKANRMKTPKHLYTQIDPLCEI-IQAMGLSILKVPDVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + G +V I + DKD+ Q+VS L +T+ + V K++G+PP + Sbjct: 121 LAISCARSGNSVLISTGDKDMAQIVSSQITLINTMSNIIFTPKEVEKQFGVPPTLIADYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE------------NILINASRIKQKKRRE 231 AL GD DNIPG+PGIG KTA +LL + GNL+ N+ + +R Q + Sbjct: 181 ALIGDRSDNIPGVPGIGKKTAQILLNKIGNLKLLYDHLDKISLLNLGLRGARAIQNTLQA 240 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 N E A LS KL ++TDV + I L+++ N L EF + Sbjct: 241 N----KEVAFLSYKLTTIKTDVSLNISDYQLLIQQLNINTLQLLFTEYEFKNWL------ 290 Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351 ID + +++ L S T L Sbjct: 291 ----------------------------IDLQSGTWLNKYHHLKHVPSHRRLNNT---LL 319 Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411 ++ LS Y I NT+ + W++K++ F I TD + + I+I + Sbjct: 320 FQKNNLLSDYSKEKKIIKIICNTEMLFNWIEKIDESKFFIFSIHTDVFNVATANIISICL 379 Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471 S +D K+ ++T S++ Q+ +EILS L+ ENE K+G ++K+ Sbjct: 380 S-IDTKESAYIPIKTD----SINNHQNFL----YLEEILSILQPTLENEKIKKVGQHLKF 430 Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530 +L RY I++ G D++L Y+L + HDI + K K+ + Sbjct: 431 SYSILKRYNINLAGMAFDVILELYILYGTANYHDIKNFLDKDTFNVVTNFKKNYDNYNEN 490 Query: 531 DKISDSQ-VQEHAIENSNVILQLWLL---LRPKLIVE-KLLHVYERLDKPMIDVVSQMEI 585 + +SD Q +Q ++ + I L+ L L PK+ KL ++E ++ P+I ++S++E Sbjct: 491 NILSDLQNIQLQSLYAAKFIKSLFNLHHTLWPKIEANNKLKKIFEEVEMPLISILSRIEN 550 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 G+ ID+ LL + E+ L +LE Y L G FNL+S KQL +IL+ + K P KT Sbjct: 551 YGVLIDKKLLNTHAVELDYRLHALELEAYQLVGTPFNLASTKQLQEILYNQQKLPILKKT 610 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 G T + L++++ + + IL++R LSK++STY + L INK++ RVHT Y+ Sbjct: 611 PKGAPSTNEEVLKKLS-KKYSMPRIILQYRALSKLQSTYINKLIAMINKKSNRVHTSYNQ 669 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 T TGRL+S PNLQNIP + G+KIR+AFI+P +++ADYSQIELRI+AH+++ Sbjct: 670 TRTSTGRLSSTSPNLQNIPNRNYDGRKIRQAFIAPKNFLIVAADYSQIELRIMAHLSQDI 729 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F + DIH A+EIF + V+ + R+ AKTINF +IYG+S F LA QL + Sbjct: 730 ELINDFLSEKDIHTATASEIFVTALHLVTDEQRQRAKTINFGLIYGMSAFGLARQLSVTC 789 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA Y+ RYF+R+PG+ +Y++ + + GYV T+ GRR++ +I S + ER Sbjct: 790 KEAQKYVDRYFNRYPGVMKYMQHIREHANKYGYVSTLDGRRLYLPDIYSANILQKKGAER 849 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AAINAP+QGSAADI ++AMIS+ L+ ++ ++++Q+HDELVFEV + + + I Sbjct: 850 AAINAPMQGSAADIIKKAMISIDNWLQKDEIPARIIMQVHDELVFEVHNDIVDPVVKKIK 909 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME+ + + VPLKV++ + NW++ Sbjct: 910 KLMEECFI----MDVPLKVDVGIGKNWEQ 934 >gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense MSR-1] Length = 925 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 247/620 (39%), Positives = 368/620 (59%), Gaps = 19/620 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST-------LDQKDDT 420 Y + + + ++ WV + IG +F T +D ++ + ++++T + K D Sbjct: 314 YELVTSVEVLEAWVAEATRIGQVAFDTETTGLDPLRAELVGVSLATAPGRACYIPIKHDA 373 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 ++ +D S + G + L +E+ L+ L + LKIGHNIKYD V+ + Sbjct: 374 GPAQGSLLLD----PSPAAAGPDILGREVTLAKLAPLLADASVLKIGHNIKYDMQVMAQA 429 Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536 G+++ F+D ML+SYVLD H + +A+ L + ++ + K+ I D++ Sbjct: 430 GLTVTAFDDTMLLSYVLDGASHGHGMDELAKLHLDHDTIKFADVCGTGKNQITFDRVPLD 489 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 + +A E++++ L+L L+ +L+ E+++ VYE L++P++ V+ ME GI++D+ L Sbjct: 490 KALAYAAEDADITLRLHGALKARLLAERMVTVYETLERPLVPVIVAMEAAGIKVDRTALM 549 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 +SAE + LE I +L+G +FN+ SP+QLG +LF + P G KTKTGQW T A Sbjct: 550 ALSAEFGGRMAELEVQIQNLAGREFNVGSPQQLGKVLFENMSLPGGKKTKTGQWGTGADA 609 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE++ + + +L+WRQLSK+K TY D+L IN RT RVHT ++LA T TGRL+S Sbjct: 610 LEELAAQGHDLPARVLDWRQLSKLKGTYTDALVAQINPRTGRVHTSFALALTTTGRLSSS 669 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIPI+++ G+KIR AFI+ P L+SADYSQIELR++AH+A I L Q F + D Sbjct: 670 DPNLQNIPIRSEEGRKIRHAFIAEPGHVLLSADYSQIELRLVAHVACIKGLIQAFHDGAD 729 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH + AA++FGV +E + P +RR AK INF IIYGIS F LA QL I EA YI YF Sbjct: 730 IHAITAAQVFGVPVEGMDPMLRRRAKAINFGIIYGISAFGLAQQLGISNGEAKSYIDAYF 789 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+P I +++E+TK R NG+V T FGR++ I ++R ERAAIN PIQG A Sbjct: 790 GRYPEIRDFMERTKEEARANGFVLTPFGRKVFTPGIKDKNGAMRAFAERAAINGPIQGGA 849 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI +RAMI + +L L ++LLQ+HDELV EVP E ++ ME A Sbjct: 850 ADIIKRAMIRLPAALAAEGLKARLLLQVHDELVLEVPVAEQDATRAVVCRVMESAA---- 905 Query: 957 NLRVPLKVNIKVSNNWQEEN 976 L VPL +W + + Sbjct: 906 QLDVPLVAEAGFGTSWGDAH 925 Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 143/287 (49%), Positives = 193/287 (67%), Gaps = 5/287 (1%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 H+FLVDGS FI+RAF+ P +SR DG PVNA+ GF ML KLL ++ A H AVI Sbjct: 9 QHVFLVDGSGFIFRAFHGLPAMSRP-DGTPVNAVYGFTTMLLKLLSDTD----ADHVAVI 63 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD ++FRN+IYP+YKA+RP PE L+PQ PL+R AF +P++E++GFEADD+IATY Sbjct: 64 FDAGRLSFRNDIYPEYKAHRPPAPEDLVPQFPLIRDVVAAFNVPSVEMEGFEADDLIATY 123 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A G VTI+S+DKDLMQLV + DT+K I V++K+G+ P+++V +QA Sbjct: 124 ATQAVARGARVTIVSSDKDLMQLVGERVEMLDTLKNRTIRAPEVLEKFGVAPDRVVDVQA 183 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD DN+PG+PGIG KTAA L+ EYG+L+++L A IKQ KRRE +L AE AR+SR Sbjct: 184 LCGDPTDNVPGVPGIGVKTAAQLIGEYGDLDSLLARAGEIKQPKRRETLLNNAELARISR 243 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 +LV L+ DVP+T L+ + L FL A F ++ R+ + Sbjct: 244 ELVRLKCDVPVTESLDSFAKRPFDRQVLADFLAAQGFKSIVARLGGS 290 >gi|290992757|ref|XP_002679000.1| DNA polymerase I [Naegleria gruberi] gi|284092615|gb|EFC46256.1| DNA polymerase I [Naegleria gruberi] Length = 1085 Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust. Identities = 340/1031 (32%), Positives = 546/1031 (52%), Gaps = 104/1031 (10%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG+ + RA++ TP L+ +G P NAI F L +L++ + H A+ Sbjct: 93 EKKILLVDGTPLVVRAYFGTPPLTSS-NGTPTNAILTFAKSLIAILKSDEFD----HVAI 147 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD + R I DYKANR + L Q P+ +L + G+ I GFEADD+IAT Sbjct: 148 FFDSGKPSIRKSISSDYKANRKPTEDNLKKQFPICKLLAEKMGLKVISKDGFEADDLIAT 207 Query: 124 YTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 A+ E F ++ ++S+DKDL L L D + ++K+ ++ +I K+ +PP+ + Sbjct: 208 VARQAKDEKFNSIVVVSSDKDLHCLSDTNLTLLDPMTKKKLTMDDIIGKYELPPKLIPEF 267 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS-RIKQKKRRENILEYAETAR 241 AL GD+ DNI G+ GIG K A LL++YG++ IL N +KK RE I + + Sbjct: 268 LALVGDTADNIKGVKGIGKKKAVSLLEQYGSISEILNNLDDENMEKKSREAIKSNIDDLK 327 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN-----GPRLISFLKALEFTKLINRVATTYDCDA 296 LS +LV L +VP+ L+ ++ + LI L+ LE +I ++ D Sbjct: 328 LSLRLVALDEEVPLDYSLQDFQVDQSSLDFSQNEELIKMLEDLEINSVIKQLKKETDKKE 387 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 + E+ + +E + + + S +SD SKI ++ Sbjct: 388 KTTKSKSKKKEVIES---VVLSEEMSSADVASLKLSHVSDD-SKIG-----------KIV 432 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 K S+Y I I+N K++ ++++++ G+ F + + H+ P+ IS Sbjct: 433 KASEYNI-------ILNEKELDSFIEQVKISGNVCFSTEI-CLLSLHN-PVMAGISFCIS 483 Query: 417 KDDTSF-------KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 + KVE F+D SV+ ++S + + EI+ EN + LKIGHNI Sbjct: 484 PGQAYYLPFFKGGKVE--FLD-SVNILKESPILSKVRTEIM-------ENPNILKIGHNI 533 Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT-------RKEILK 522 KY +L YG++++ F+DIM+MSYVL+ G+ H++ I + L KE+L Sbjct: 534 KYHIKMLANYGVTVKNFDDIMVMSYVLNCGKHGHEMDEIVENVLLLDPKEHIIPEKEVLG 593 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVS 581 K + + + V A +++++ Q + +L+ L KL YE ++KP+++ ++ Sbjct: 594 IGKKKVTLMEADIVSVVHFACQHADLTKQAYDVLKSALDKSPKLTQFYEGIEKPLVETLA 653 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG----------------------- 618 +E+ G+ +D+ L ++ E + + ++ I + +G Sbjct: 654 GIEMKGVFMDEPALVKMENEYREKIKAIGNKIREDAGYPTIDEDIEIPTSEEEIESMIIE 713 Query: 619 ---------EKFNLSSPKQLGDILFTKLKFPSG--AKTKTGQWKTTAQDLEQINCGDNPI 667 E+FN++S +QLG ++F KL + KTK G + A+ L+++ + I Sbjct: 714 MDEMKQEASEEFNINSNRQLGQVIFEKLGIGTKLRKKTKVGDYILNAEVLQKLAAEGHSI 773 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 K+ILE+R L+K+ STY L HIN T+R+HT + A T+TGRL+S+ PN+QNIP++T Sbjct: 774 AKHILEYRALTKLYSTYISGLRQHINPYTKRIHTTFQNALTVTGRLSSVMPNIQNIPVRT 833 Query: 728 DLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 G++IRR FISP +I DYSQ+ELRILAHIA I L F+ + D+H + A+++F Sbjct: 834 AEGKQIRRCFISPSDDYVIMKVDYSQVELRILAHIANIPVLKNAFKENKDVHAITASQVF 893 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 V +++V R AK INF IIYG+S F L+ ++ + A +I++YF ++PGI Y+ Sbjct: 894 NVPLDQVDKSTRNKAKAINFGIIYGMSEFGLSKRIGVDTQAAKSFIEQYFKQYPGIKNYM 953 Query: 847 EKTKNFVRQNGYVETIFGRRIHY----DEINSPKSSIRNINERAAINAPIQGSAADITRR 902 KT F R++GYV T+F RR D+ KSS ER +IN PIQG++ADIT+ Sbjct: 954 TKTIEFCRKHGYVNTLFNRRCWIPGIEDQGFGGKSS---FGERTSINTPIQGTSADITKI 1010 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC-LPKINLRVP 961 AM S+HK+ ++ L T+M++Q+HDE+VFEVP++E+ T II ME A N VP Sbjct: 1011 AMNSLHKAFQEKGLRTRMIIQVHDEIVFEVPKDEVETVEPIIKELMEGAAFFGGTNFTVP 1070 Query: 962 LKVNIKVSNNW 972 L V V + W Sbjct: 1071 LTVEATVDSKW 1081 >gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142] gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142] Length = 970 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 349/1021 (34%), Positives = 536/1021 (52%), Gaps = 115/1021 (11%) Query: 7 LFLVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG S +RA+YA PL R G+P + GF N L + ++ + IA Sbjct: 10 LMLIDGHSLAFRAYYAFAKARKGPL--RTSTGIPTSVCFGFLNSLIQAIKLENPQYIA-- 65 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 + FD TFR+E +YKA+R + PE +P + ++ +A I I G+EADD+ Sbjct: 66 --IAFDSKEPTFRHEADVNYKADRKETPEDFIPDILNLQRLLEALNITIITAPGYEADDV 123 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKEE------KIDIEHV 168 + T +EG+ V I+S D+DL QLV+ + LY + VK + ++E V Sbjct: 124 LGTVATKGSQEGYRVKIVSGDRDLFQLVNDDNHLSVLYLERNAVKSSSGEGYTEFNVEAV 183 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--- 225 +K GI P +++ +AL GD DNIPG+ GIG KTA LL EYG LE + N IK Sbjct: 184 TEKMGIKPTQVIDYKALCGDKSDNIPGVRGIGEKTAVKLLSEYGTLEAVYNNIEEIKGAN 243 Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 QKK +E E A S+ L + TD P+ +E L+ N + L+ LE K I Sbjct: 244 QKKLKEGKKE----AEHSQYLAEIVTDAPLEFQIERCELKGFNFDAVKPILEELELKKFI 299 Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS-- 343 + + NI + + +I+++ T + S F + ++ +N+ Sbjct: 300 KEINQLQEHFGGNIT-------------LEVHEKINKNETHQLSIFDDVPEKVEPVNNIK 346 Query: 344 EQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT----M 399 E+T + L IN T+I + + + V KL T +A+ + DT + Sbjct: 347 EETKESL------------INPQIITEI---EQLHELVDKLSTFTNANIPVAWDTETTDL 391 Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459 + + + I + D ++ + + Q GK +++L L+ E+ Sbjct: 392 NPRQANLVGIGCCWGNNPTDIAY--------IPIGHKQ---GKQLKKEQVLDSLRTILES 440 Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL----S 514 + K+ N K+D+L+ I++ G D ML SYVL +S H ++ + +++L Sbjct: 441 SDYPKVFQNTKFDRLIFKHQAINLDGVVFDTMLASYVLHPEKS-HKLSELCEQYLEGITC 499 Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLD 573 E+ S+K +I + +V E+ ++ L L+ +L V L + ++ Sbjct: 500 QNYDELGISKKQTIA--DLDIEKVAEYCGMDAYGTFLLVEPLKNELQQVPTLEQLLLEVE 557 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 +P+ V+S ME TGI ID + L ++S E+ + L SLE+ YD + EKFNL SPKQLG+IL Sbjct: 558 QPLEAVLSIMEDTGILIDTEYLGKLSKELEQELSSLEKKAYDAAEEKFNLGSPKQLGEIL 617 Query: 634 FTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 F KL+ KTKTG + T LE++ GD+PII ILE+R LSK+KSTY D+LP Sbjct: 618 FEKLELNRKKSRKTKTG-YSTDHATLEKLK-GDHPIIDYILEYRTLSKLKSTYIDALPEL 675 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 +NK+T+R+HT ++ + T TGRL+S PNLQNIPI+T+ ++IR+AFI L+SADYS Sbjct: 676 VNKKTKRIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQKDWLLVSADYS 735 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELRILAH+++ + L ++N+ D+H + A +F E+++PQ R KTINF +IYG Sbjct: 736 QIELRILAHLSQESVLLNAYQNAEDVHTVTAKLLF--EKEEITPQERNLGKTINFGVIYG 793 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 + R A + + +E ++I +Y R+ + EY+E K NGYV TI GRR +++ Sbjct: 794 MGSQRFAREAGVSATEGKEFINKYRQRYAKVFEYLENMKKEAIANGYVTTILGRRRYFNF 853 Query: 872 INSPKSSIR------------NINE------RAAINAPIQGSAADITRRAMISVHKSLED 913 + R NIN RAA NAPIQGS+ADI + AM+ + + L Sbjct: 854 FDDNLYRFRGHDPQTIDLNKLNINYNDSQLLRAAANAPIQGSSADIIKIAMVKIQEILNY 913 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 ++ +LLQ+HDELVFE+PE+E + I +ME A + L +PL V I NW Sbjct: 914 YQ--ANLLLQVHDELVFEIPEKEWEELNHKIKETMENA----VKLTIPLVVEIHAGKNWM 967 Query: 974 E 974 E Sbjct: 968 E 968 >gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Magnetospirillum magnetotacticum MS-1] Length = 485 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 229/456 (50%), Positives = 324/456 (71%) Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 ++ + ++ + ++++ + +A E+++V L+LW +++P+L+ E+ + VYE L++P++ Sbjct: 28 DVAGTGRNKVTFERVAIDKATAYAAEDADVTLRLWRMMKPRLVAERRVTVYETLERPLVP 87 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V+++ME GI+ID+++L ++S + S+ L LEE I + +GEKF +SSPKQ+GD+LF KL Sbjct: 88 VLARMERAGIRIDRNMLSRLSGDFSQILARLEEEIQEDAGEKFQVSSPKQIGDVLFGKLG 147 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P KT +GQW T A LE++ + + K IL WRQL+K+KSTY DSL H ++ T R Sbjct: 148 LPGAKKTPSGQWATPATLLEELAQAGHELPKKILNWRQLAKLKSTYTDSLQEHADRETNR 207 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT +SLA+T TGRL+S EPNLQNIPI+T+ G++IRRAF++P KKLISADYSQIELR+L Sbjct: 208 VHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRRIRRAFVAPEGKKLISADYSQIELRLL 267 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AHIA I L + FE LDIH A+ +FGV +++++ +RR AKTINF IIYGIS F LA Sbjct: 268 AHIADIPQLREAFEQGLDIHAATASAMFGVPLDQMTGDLRRRAKTINFGIIYGISAFGLA 327 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 +L I R EA+ +IK+YF RFPGI +YI+ TK R+ GYV T+FGR HY +I S S Sbjct: 328 DRLGIGREEASAFIKQYFERFPGIRDYIDTTKKSCREKGYVTTLFGRVCHYPQIRSNNPS 387 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 R ER AINAPIQG+AADI RRAM + +LE +L +MLLQ+HDELVFEVP++E+ Sbjct: 388 ERASVERQAINAPIQGTAADIIRRAMTRMEAALEAKRLTARMLLQVHDELVFEVPDDEVE 447 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I ME+A P + L VPL V + + NW+E Sbjct: 448 ATIPVIAEVMEQAPAPALTLSVPLVVEARAAGNWEE 483 >gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421] gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421] Length = 938 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 332/1001 (33%), Positives = 522/1001 (52%), Gaps = 106/1001 (10%) Query: 7 LFLVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L LVDG S YRA++A T L R G P + GF +L ++ R S Sbjct: 9 LLLVDGHSLAYRAYFAYVRGGETGL--RTSGGTPTSVSFGFLKLLLDAIERDRP----SM 62 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV FD TFR+E+ YK+ R + P+ + L +R A +P E+ G+EADD+ Sbjct: 63 VAVTFDTRMPTFRHEVDATYKSGRAETPDEFIDDLQNLREILTALDLPQFELPGYEADDL 122 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK---------EEKIDIEHVIKK 171 I T +G+ V I+S D+DL QL++ +++ E+ V +K Sbjct: 123 IGTLAVHGAGQGYDVKILSGDQDLFQLITDEGAPGGSIRVLHQNTRTGTEEFGPAQVKEK 182 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---KK 228 GI P ++V +AL GDS D IPG+ GIG K+A LL+EYG+L ++ I KK Sbjct: 183 LGIAPRQVVDYKALCGDSSDRIPGVRGIGAKSAVKLLEEYGSLAQLIEAVDTIPGALGKK 242 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI--- 285 +E + E AR S + + T+VP+ + E L + R+ L+ LEF + Sbjct: 243 LKEGV----EDARHSYWMATIETNVPLVVDFEACRLVGFDAERVAPLLEKLEFRSFLRQL 298 Query: 286 NRVATTYDCDAANIEPVVLD---INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN 342 R+ ++ + P L+ N G A E E+ D F+ Sbjct: 299 QRLQRSFGG-TPSARPTALNEDADNPLAGIGTASEDELWFD-------FAP--------- 341 Query: 343 SEQTPQKLFLERLQKLSQYPINNDSYTKIVNT-KDIQQWVQKL-ETIGSASFKIITDTMD 400 + D ++V T +D Q ++ L G ++ T+ +D Sbjct: 342 -------------------SVPMDLEVRVVQTAEDFQAFLDALLAQDGLVAWDTETNNLD 382 Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460 H++ + I +++ + H G N T +++ L ++++ Sbjct: 383 PRHARLVGIG---------CAWEPGVAYYLPLAHQQ----GSNLETDAVVAALTPYWQDR 429 Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519 K+ N KYD LVL YG+++ G D ML SYVLD H++ ++AQ L T Sbjct: 430 ERPKVLQNAKYDWLVLRNYGVALAGIAFDPMLASYVLDP-EGKHNLMTLAQNHLQIT--- 485 Query: 520 ILKSRKSSIP----IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDK 574 + S ++ +P ID + + V + E++ V L+L +L+ KL + +L +++ ++ Sbjct: 486 -MGSYEALVPKGQTIDAVEIAAVSRYCGEDAAVTLRLVPVLQAKLDEDPRLAGIFKEIEV 544 Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P+ V+++ME GI+ID+ L +++ E+ ++L SLE+ Y L+G KFNL SPKQL D+LF Sbjct: 545 PLEPVLARMEERGIRIDKAYLGELAQELDRDLESLEQEAYTLAGSKFNLGSPKQLSDLLF 604 Query: 635 TKLKFPSGAKTKTG-QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 KL + KT + T A LE++ D+PI++ IL +R L+K+KSTY D+LP ++ Sbjct: 605 NKLGLSAKKSRKTSLGYSTDAAVLEKLR-DDHPIVEAILSYRTLAKLKSTYVDALPLLVD 663 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753 RT RVHT ++ T TGRL+S PNLQNIP++T ++IRRAF+ P L++ADYSQI Sbjct: 664 PRTDRVHTDFNQTVTTTGRLSSSNPNLQNIPVRTSFSRRIRRAFVPEPGWLLVAADYSQI 723 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELRILAH+ + L + F+ D+H + A + G E+V+ + RR AK IN+ ++YG+ Sbjct: 724 ELRILAHLTQEPVLLEAFQTGGDVHTLTARLLLGR--EEVTSEERRLAKIINYGVVYGMG 781 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 R A + + +EA D+IK ++ R+P + ++E+T+ + GYVET+ GRR ++ + Sbjct: 782 ARRFARETGVSATEAEDFIKAFYRRYPAVFGFMEQTRRMAVEQGYVETLLGRRRYFRGLG 841 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 R RAA NAPIQG+AADI + AM+ + ++L + T++LLQ+HDELVFE+P Sbjct: 842 QLNQRDREGALRAAFNAPIQGTAADIIKIAMVRLEQTLAGRR--TRLLLQVHDELVFEMP 899 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EE +I ME A ++L VPLKV + NW E Sbjct: 900 PEERPEVEPLIRSGMENA----LDLLVPLKVELNAGPNWLE 936 >gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] Length = 953 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 326/1005 (32%), Positives = 517/1005 (51%), Gaps = 91/1005 (9%) Query: 1 MQKENHLFLVDGSSFIYRAFYA--TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 MQ+ L LVDG + +RAF+A +S + G P A+ GF ++L LL+ + E +A Sbjct: 1 MQQRPTLVLVDGHALAFRAFFALRDTGMSVRATGEPTYAVQGFLSILLNLLRERQPEYVA 60 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 F + TFR+++YPDYKA R + P PQL ++ A IP + +EAD Sbjct: 61 VSFDI-----GRTFRDDLYPDYKAGRAETPADFHPQLERIKQIINALNIPIYTAENYEAD 115 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-----YDTVKEEKIDIEHVIKKW- 172 D+I T AE +G II+ D D +QLV+ T + Y D V +++ Sbjct: 116 DVIGTLCRQAEAQGVDTLIITGDTDTLQLVNDYTKVLLANPYGKGNVSLYDEAQVRERYK 175 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 G+ P ++ L+ L GD+ DNIPG+ GIG A +L E+G++ENI N ++ + R Sbjct: 176 GLAPNQLADLRGLKGDTSDNIPGVKGIGEAGAISMLNEWGSVENIYANLDKVA-NRYRSK 234 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 + E AR S L + T+ P+T+ LE + D + +++ LEF KL++++ + Sbjct: 235 LDGQQEAARFSTHLATIVTNAPVTLDLEATKVHDYDRDTVLALFSQLEFRKLVDKLPLSS 294 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 A + +AI T +Q + D T Sbjct: 295 QVSAVQV--------------VAIPQ------TTNPNQLTMFDDATPP------------ 322 Query: 353 ERLQKLSQYPI-NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411 S PI + Y + ++ + + V+ L F + T++++ F P + Sbjct: 323 ------SAEPIAQSGDYQAVTTSEQLAELVRILTAAERLIFDVETNSLNLFSPVPAKVVG 376 Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471 L + +I L H S G+ E+++ L+ F + + HN K+ Sbjct: 377 IALTHTAGCGW-----YIPLG-HRS----GQQLPIAEVVAALQPLFSDPQKAVVAHNGKF 426 Query: 472 DKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA-----SIAQKWLSYTRKEIL-KSR 524 D L G+ + D + + +L +S D+A + + TR E L + Sbjct: 427 DMSALSLIGLDVPHLSFDTAIAAALLGKRQSLKDLAFAELRDADDRPIEMTRIETLIGTG 486 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQM 583 K I +D+++ QV +A + ++ +L L P+L + + V+E+++ P+ V+ +M Sbjct: 487 KKQITMDQVAIEQVTPYASADVDMTARLLALFMPQLGAIPAVREVFEQIEMPLSPVLMRM 546 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG- 642 E GI +D+ L Q + ++L +E++I D GE N++S L D+LF +LK P+ Sbjct: 547 EACGIGLDRAQLVQQGQVLGQSLREIEQHIADFVGEPLNINSRFDLNDLLFIRLKLPTAN 606 Query: 643 -----AKTKTGQ--WKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINK 694 T++G + A+ LE + D + I+ IL +R+LSK+KSTY D+L IN+ Sbjct: 607 LKRLAGTTRSGGAVYSVNAETLEDLQTHDQSGIVAMILRYRRLSKLKSTYVDALIELINQ 666 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754 +T RVHT Y TGRL+S PNLQNIP++++ G++IRRAF++ P L++ADYSQIE Sbjct: 667 QTGRVHTQYRQIGAETGRLSSDSPNLQNIPVRSEEGREIRRAFVARPGHVLMTADYSQIE 726 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LR+LAHI L +VF+ DIH AA +F + +++VS RR AK F IIYGIS Sbjct: 727 LRVLAHITADPALVEVFKTGQDIHAATAARLFDIPMDEVSKNQRRIAKMTVFGIIYGISS 786 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE--- 871 F LA + + R+EA I F ++PG+ YIE+T V+ GYVET+FGRR ++ E Sbjct: 787 FGLAARTALSRTEAQQMINGLFAQYPGLKSYIERTLERVKAVGYVETLFGRRRYFRELQD 846 Query: 872 --INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 + P+ R+ ER A NA IQG+AAD+ + AMI + ++L KMLLQ+HDELV Sbjct: 847 GGVTGPR---RSAFEREATNAGIQGTAADLIKLAMIRLEQALIAGGYQAKMLLQVHDELV 903 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EVPE+E +Q++ +M + P +L VPL+VN++ NW + Sbjct: 904 LEVPEDERDAVAQLVCDTMTQ-VYP--DLAVPLEVNVETGLNWDQ 945 >gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] Length = 896 Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust. Identities = 327/983 (33%), Positives = 514/983 (52%), Gaps = 109/983 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L DG++ YR +Y + G P NA+ G ML K + K + FA FD Sbjct: 5 LYLFDGTAIFYRGYYGIDVTLTNSKGEPTNALFGTARMLSKFTRERMKNGDYAIFA--FD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +T R+ Y YKA R +P+ L+ QL V +AFGI + I G EADDI+AT Sbjct: 63 RKELTKRHVAYESYKATREAMPDALVAQLKDVPELVEAFGIKFLSIAGIEADDIVATAAK 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP-------TTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 + V +I+ DKDL+QLV T L D + D E V+ ++ + PE++ Sbjct: 123 KYRDKVDEVLVITGDKDLLQLVDDKVHILRFVTGLTDL---DLYDREKVLSRYELEPERL 179 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L +L GDS DNIPG+PGIG KTA LL+EYG++E I N ++ R++ +++ + Sbjct: 180 HALLSLAGDSSDNIPGVPGIGIKTAQKLLKEYGDIEGIYANIRKLSPGLRKK-LIDGRSS 238 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 LS +LV L + + I L+ + E L LEF+ ++N T D + Sbjct: 239 LELSMELVKLLDNEDLNIELDDIKYEGFRKNDLRKIFLKLEFSSMMNEFNLTDKADDSF- 297 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 EID +K SE ++LF +KL Sbjct: 298 ------------------AEIDGYRLVK---------------SENELERLF----EKLV 320 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 PI + LE T ++D +K + ++IS D+ Sbjct: 321 SNPI----------------FAIDLE----------TSSLDPHCAKIVGVSISI----DE 350 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 S + + +S G +L LKK E+ IG N+K+D VL Sbjct: 351 GS--------GYYIPIAHESDGWQADRDYVLKNLKKLLEDRSTKIIGQNLKFDYSVLAVN 402 Query: 480 GIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 GI + F D ML +Y+L ++ +A K+L Y ++++K + K+ Sbjct: 403 GIHPVVPDF-DTMLAAYLLSPDAKRFNLDELAMKFLGYKTIKFEDLMKKNQLGDDFTKVP 461 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + +++E++++ L+L +LR K+ ++L ++ +++ +I V++ +E+ G+ D Sbjct: 462 LEEAARYSVEDADISLRLSSVLRKKIYEQELEEIFRKVELALIPVLADLELNGVYFDVPS 521 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 LK +S + K L + E ++DL+GE+FN +SP Q+G +LF +L KTK G + T+A Sbjct: 522 LKNLSEKYGKILDKILEELFDLTGEQFNPNSPSQVGKVLFERLGLTPSKKTKGGSYSTSA 581 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE+I ++P ++ +L++R+ K+KSTY DSLP +NK T R+HT Y T TGRL+ Sbjct: 582 DALEEI-ADEHPAVQKLLDYRKYQKLKSTYLDSLPELVNKVTGRIHTSYHQTGTGTGRLS 640 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFE 772 S PN+QN+PI+ + G++IR+ I P K K++SADYSQIELRILAH+++ L F+ Sbjct: 641 SSNPNMQNLPIRDEEGKEIRKCVI-PQKKGWKIVSADYSQIELRILAHLSQDKQLLDAFK 699 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 N D+H + A+ ++G+ +VS + RR K INFSIIYGIS + LA++LRIP + A + I Sbjct: 700 NDKDVHSLTASNLYGIKESEVSEEQRRIGKMINFSIIYGISSYGLASRLRIPTNVAEEMI 759 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI---NERAAIN 889 YF FP + +I T + ++ +V T+FGR+ EI K+ RN+ ER AIN Sbjct: 760 SNYFKAFPEVRAFIRDTISEAKEKCFVRTMFGRK---REIPQFKTKNRNVIQEGERIAIN 816 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 PIQG+AADI + AMI ++ L++ ++ + +LQ+HDE+V+E PE+EI +I+ M Sbjct: 817 TPIQGTAADIMKMAMIKIYNLLKEKEMESFAILQVHDEMVYEAPEKEIEKLKEILKEGMS 876 Query: 950 KACLPKINLRVPLKVNIKVSNNW 972 + + L VPL + I V + W Sbjct: 877 EV----VELSVPLDIEISVGDYW 895 >gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 772 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 295/820 (35%), Positives = 458/820 (55%), Gaps = 67/820 (8%) Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225 + V+ K+G+PPE ++ AL GDS DNIPG+PG+G KTA LLQ G L+ + +I Sbjct: 7 DEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIA 66 Query: 226 ------QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279 K + + + A LS KL ++TDV + + E L ++ L+ K Sbjct: 67 GLTFRGAKTMAGKLAQNKDVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKY 126 Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339 EF + V A +P T + I+ S S+ + Sbjct: 127 EFKRWTADVEAGKWLQAKGAKPAAKPQET-----VVID--------------ESPSEPAA 167 Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTM 399 ++ E +Y I++ ++ W++KL+ +F TD++ Sbjct: 168 ALSYE----------------------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSL 205 Query: 400 DAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN 459 D + + ++ + ++ V ++D S+ + L LK E+ Sbjct: 206 DNIAANLVGLSFA-IEPGVAAYVPVAHDYLDAPDQISR---------QRALELLKPLLED 255 Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY--- 515 E K+G N+KYD+ VL YGI +RG D ML SY+L+S HD+ S++ +WL + Sbjct: 256 EKVRKVGQNLKYDRGVLQNYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTI 315 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDK 574 T ++I K+ + ++I+ + +A E+++V LQL L + P+L K L+V+E ++ Sbjct: 316 TFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEM 375 Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P++ V+S++E G++ID +L + S EI+ L LE+ +D++GE FNLSS KQL ILF Sbjct: 376 PLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILF 435 Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 K KT G T+ + LE++ D P+ K ILE+R L+K+KSTY D LP IN Sbjct: 436 EKQGIKPLKKTPGGAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINP 494 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754 +T RVHT Y A T TGRL+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIE Sbjct: 495 KTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIE 554 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LRI+AH+++ L F DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S Sbjct: 555 LRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSA 614 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 F L+ QL IPR EA Y+ YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S Sbjct: 615 FGLSRQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKS 674 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 ++ R ERAAINAP+QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV + Sbjct: 675 SNAARRAGAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 734 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ ++ I H + + C + VPL V + NW + Sbjct: 735 DDLDAVAKRI-HQLMENC---TRIDVPLLVEVGSGENWDQ 770 >gi|261415194|ref|YP_003248877.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371650|gb|ACX74395.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327893|gb|ADL27094.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 972 Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust. Identities = 325/1018 (31%), Positives = 523/1018 (51%), Gaps = 97/1018 (9%) Query: 4 ENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 E L L+D + +R FYA PL++ K G V+ + G+ + ++L + +H Sbjct: 3 EKTLLLLDSFALAFRMFYAYSQNPLVNSK--GEDVSMMHGYWGAVLRILAKHK----PTH 56 Query: 61 FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 FA+ D TFR+E+YPDYKANR +PE + Q+PL+ + +A GIP + G+EADD Sbjct: 57 FAIARDVAHTKTFRHELYPDYKANRGPMPEEMAAQMPLLCESMEASGIPLLSEPGYEADD 116 Query: 120 IIATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVK-EEKIDI--EHVIKKWGIP 175 ++A+ A GF V IIS DKD+ Q+V+ L+ K + ID + V++K+GIP Sbjct: 117 VMASAAEAAVNAGFDHVVIISKDKDMSQIVTDKIHLFHLEKGADGIDFGPQQVLEKYGIP 176 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PEK+ AL GDS DN+PG+P +G KTA LL EYG+++NI N IK+K +N+ Sbjct: 177 PEKIRDYLALMGDSSDNVPGVPKVGPKTAIQLLTEYGDMDNIYANLDNIKKKGLHDNLAN 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E A LSR+LV L+T L+ L + L + E LI + Sbjct: 237 NKEQAFLSRELVTLQTKRAYHGNLDALEFCGLHSDTLEGIFREHEINSLIRLLE------ 290 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 N G + D D + S+ + SD S +S K Sbjct: 291 -----------NVPSKTGFVRKD--DSDDSAAGSESNGTSDDASGDSSNSKVVK------ 331 Query: 356 QKLSQYPIN-NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST- 413 + +P + +Y + N + +Q ++ + TD +D + + ++ Sbjct: 332 ---ASFPADLPPTYICVDNDEVFEQMKKEFDEATEIGIDTETDGLDPMQCNIVGLCLAAA 388 Query: 414 -------------LDQKDDTSF-------------KVETIFIDLSVHTSQDSTGKNTLTK 447 L DD F + FID DS TL Sbjct: 389 AKDGSVPKGYYIPLGHTDDIGFPYPAGKGGNFDFNATKKWFIDFW----NDSC---TLPG 441 Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHR-YGISMRGFE-----DIMLMSYVLDSGRS 501 +I K ++ + HN K+D VL R +G++ + + D ++ +++L G++ Sbjct: 442 DISDSGSKQPDSAKRSLVFHNAKFDLHVLARTFGLTQKQIDSANIIDTLIAAWMLSPGQT 501 Query: 502 SHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558 + + + L + + ++ K I ++ E+ E++ L+LW LR Sbjct: 502 GLGLDNQVMQLLQHEMIPIENLIGRGKKQITFNRTPIKDATEYGAEDAVYTLRLWAPLRA 561 Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 KL + + P++ V+ QME G +D +LK++ ++ + LE+ I D++G Sbjct: 562 KLQKYDYEKYFFSQEMPLLKVLYQMEGVGAFVDTKILKKLQTDLEHRIEKLEKEICDMAG 621 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQL 677 +FN+ SPKQLG++LF L P K T A LE+++ +PI+ ++E+R+L Sbjct: 622 CEFNIGSPKQLGEVLFDTLGLPEIKKRST-----DAAVLEELSFRSAHPIVFAVIEYREL 676 Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 K++STY LP +N T+R+HT + T TGRL+S +PNLQNIP+++DLG++IR AF Sbjct: 677 KKMQSTYVSVLPTLVNPDTKRIHTSFIQWGTATGRLSSRDPNLQNIPVRSDLGKQIRAAF 736 Query: 738 ISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 + P +++ DYSQIELR+LAH++ L + ++ +DIH AA I V++E V+ Sbjct: 737 VPQNPNNVILAVDYSQIELRMLAHLSGDEALIESYKEGIDIHARTAAAINRVSLEDVTAD 796 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 MRR AK +NF ++YG++ FRL+ L+IP ++A +I YF + G+ ++I+ TK ++ Sbjct: 797 MRRDAKVVNFGVLYGMTAFRLSRDLKIPMAQAKSFIDGYFEMYQGVQKFIDDTKAAAHRD 856 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GYVET+ GRR + I+S + ER A+N P+QGSAAD+ + AMI + K + D L Sbjct: 857 GYVETLSGRRRYIAGIDSSDRMESQMAERMAVNTPVQGSAADLIKIAMIRIQKRINDENL 916 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +M+LQ+HDELVFE P++++ S ++ ME A + L+VPL ++ NW E Sbjct: 917 PLRMMLQVHDELVFECPKDQVEALSAMVKSEMEGA----MELKVPLVASVGFGKNWLE 970 >gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] Length = 911 Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust. Identities = 323/981 (32%), Positives = 517/981 (52%), Gaps = 94/981 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L+L+DG S IYR+++A + R DG V+A+ GF L+ +L R ++A V Sbjct: 10 LYLLDGYSIIYRSYFA--FMGRHLSAPDGTNVSALFGFFRTLFSILDEYRPGALA----V 63 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 + D TFR+E+YP+YKANR K PE L Q+P++ G+ + G EADDIIAT Sbjct: 64 VLDSRVPTFRHEMYPEYKANREKAPEELHAQVPMIEEILGVMGMTVLRKDGVEADDIIAT 123 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--EKIDIEHVIKKWGIPPEKMVC 181 K+ I++ DKDL+QL+ + K + I + V +WG+ +++V Sbjct: 124 MAERCRKKDRPCVIVTGDKDLLQLLGGEIRMLRPEKGGYQLIGRDDVFDQWGVEADQIVD 183 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA-ETA 240 +LTGD DN+PG+ GIG KTA+ LL ++G+L+ + N + +R + LE + E A Sbjct: 184 YLSLTGDQADNVPGVKGIGPKTASKLLTKFGDLDGVYANLNACSTGERAK--LEASREDA 241 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LSR L++L+ DV ++P E P + L NR A Sbjct: 242 FLSRSLIILKKDV--SLPPE--------APTPVGDL---------NREAAV--------- 273 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 P++L G E + I Q S ++ ++ +S P +L Sbjct: 274 PLLL------RYGAKALAEQAKGAKISEKQLSRQREKRAEASS--VPDEL---------- 315 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 + Y +I + + + +W++K + G+ + I TD++DA + P+ +++ ++ Sbjct: 316 --LGEGRYEQIDDLEGLDRWIEKAISAGACALDIETDSLDAMLANPVGFSLAVSPKQ--- 370 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 + + + G+ + + L + + IGHN KYD VL R+ Sbjct: 371 -----------AAYLPLIAEGQRKFDDDAVRERLVRLTSSPSVRIIGHNFKYDYKVLRRW 419 Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK----IS 534 G+ + D M+ +++LD+ +S+ + +A L Y K I S K +P D IS Sbjct: 420 GVVTKNLAFDTMVAAWLLDTTANSYGMDPLAASLLGY--KTI--SFKDVVPKDGLFQDIS 475 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 +A E++++ + + L R +L L ++ L+ P++ ++++ME GI + D Sbjct: 476 VETATRYAAEDADITFRFYELFRRQLKERGLEKLFFELEMPLVPILAEMECAGITLLSDR 535 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ E+ K+L ++E++I+ G FN++S KQL +LF + K KTKTG + T Sbjct: 536 LEAYGRELEKDLGTIEDDIWQACGHSFNINSTKQLQQVLFEERKLTPIKKTKTG-YSTDI 594 Query: 655 QDLEQINCGDN-PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 LE++ D P++ +L R L+K+KSTY D+LP +N T R+HT T TGRL Sbjct: 595 SVLEELAREDVVPLL--VLRHRSLAKLKSTYVDALPKLVNPETGRIHTQLIQTGTATGRL 652 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIPI+ + G++IR AF+ ISADYSQIEL +LAH+++ L Q F + Sbjct: 653 SSKDPNLQNIPIRDEDGRRIRSAFVPAEGNLFISADYSQIELVVLAHLSEDPELSQAFRS 712 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 D+HR A+ IF V+ VS + RR AKTINF ++YG+S FRL+ +L I RS A +I Sbjct: 713 GGDVHRRTASLIFDVSEADVSSEQRRIAKTINFGVMYGMSAFRLSRELGISRSRADSFIS 772 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF R+ I ++ K Q+G +T+ GR INS + + ER A+N PIQ Sbjct: 773 AYFRRYFRIQSFMRKVVQETEQSGVSKTLLGRERSIPAINSRNKTEKAGAERIAVNTPIQ 832 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI + AM++V + + +L +KM+LQIHDEL+FEVP +E ++ ME A Sbjct: 833 GTAADIVKLAMLAVSRRMASEELKSKMVLQIHDELLFEVPFDEADRMEGLLKEEMESA-- 890 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 + L VPL+V+I+ +W + Sbjct: 891 --VKLSVPLRVSIERGGSWGD 909 >gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222] gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222] Length = 940 Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust. Identities = 255/624 (40%), Positives = 374/624 (59%), Gaps = 21/624 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ Y I + + +W+ ++ G + T +D ++ + +++ T + Sbjct: 328 IDRSLYITIRDEAVLAEWLAEIAEKGVVAIDTETTGLDEMQAELVGVSLCTGPGR----- 382 Query: 423 KVETIFIDLS-VHTSQDSTGKNTLTK------EILSYLKKFFENEHFLKIGHNIKYDKLV 475 ++ L V + D G + L+ LK E+ LKIG NIKYD V Sbjct: 383 ---AAYLPLGHVDGAADLFGSGARVEGQMDLDRALAMLKPVLEDPSVLKIGQNIKYDWKV 439 Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDK 532 L R+GI M +D ML+SY ++G +H + +A +L + K+++ S KS I + Sbjct: 440 LARHGIRMVPLDDTMLLSYAQNAGAHNHGMDELADLYLGHRCLPIKDLIGSGKSQINFSQ 499 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 ++ + E+A E++ V +LW LRPKL + YERL++PMI V++ ME+ GI+ID Sbjct: 500 VAIDKASEYAAEDAEVTWRLWRHLRPKLAPNHVTTAYERLERPMIAVLADMEMAGIRIDS 559 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 + LK++S ++ + LE I++L+G FN+ SPKQLG+ILF ++ G + KTG + T Sbjct: 560 EHLKRMSNAFAQKMAGLEAEIHELAGGPFNVGSPKQLGEILFERMGLAGGKQGKTGAFST 619 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A+ LE + + + +L+WR +SK+KSTY D+LP H+N T RVHT YS+A TGR Sbjct: 620 GAEVLEDLAAEGHELPARVLDWRAISKLKSTYTDALPLHVNPETGRVHTSYSIAGAQTGR 679 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 LAS +PNLQNIP++TD G++IR AF++ P +L+S DYSQIELRILAH+A+I L Q F Sbjct: 680 LASTDPNLQNIPVRTDEGRRIREAFVAAPGMRLVSLDYSQIELRILAHVAQIPALQQAFR 739 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + +DIH M A+++FGV +E + P +RR AK INF +IYGIS F LA LRIPR+EA +I Sbjct: 740 DGIDIHAMTASQMFGVPVEGMDPMIRRRAKAINFGVIYGISGFGLARNLRIPRAEAQAFI 799 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF RFP I Y+++T +Q+G+V T+FGRRI IN RAAINAPI Sbjct: 800 DTYFERFPEIRAYMDRTVAGAKQDGFVRTLFGRRIMTPGINQ-SGPAAGGARRAAINAPI 858 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI RRAMI + +++ L +MLLQ+HDELVFEV E + ++ M+ A Sbjct: 859 QGAAADIIRRAMIRMPQAIA--HLPARMLLQVHDELVFEVEEAAVPELVEVARGVMQGAA 916 Query: 953 LPKINLRVPLKVNIKVSNNWQEEN 976 P + L VPL V+ NW E + Sbjct: 917 DPAVRLDVPLIVDAGQGANWAEAH 940 Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 149/293 (50%), Positives = 204/293 (69%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS+FI+RA++A P L+R+ DGLP+ A+AGFCNM+WK LQ+ + +H A Sbjct: 7 KGHHLHLIDGSAFIFRAYHALPPLTRRSDGLPIGAVAGFCNMVWKYLQDGKGSDQPTHAA 66 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD+ A TFRN+IYP YKANRP+ PE L PQ PL R AT+AF I IE +GFEADDIIA Sbjct: 67 VIFDHSARTFRNDIYPLYKANRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIA 126 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 + A G VTIIS+DKDLMQLV + D +K + I + V +K+G+ PE++V + Sbjct: 127 SLACQARDAGGRVTIISSDKDLMQLVGGGVEMMDPIKAKPIGPDEVREKFGVGPERVVDV 186 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDSIDN+PG PGIG KTAA L++EYG+LE++L A+ IKQ KRR+ ++++AE R+ Sbjct: 187 QALAGDSIDNVPGAPGIGIKTAAQLIEEYGDLESLLARAAEIKQPKRRQTLIDHAEQIRI 246 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 S++LV L + + LE L + + + L+ FL +E L RVA + + Sbjct: 247 SKRLVELDCGMVLDFTLESLEIREPDPEALLEFLTRMELRTLTKRVAERFGTE 299 >gi|330938832|gb|EGH42351.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B] Length = 832 Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust. Identities = 309/905 (34%), Positives = 478/905 (52%), Gaps = 103/905 (11%) Query: 97 LVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD 156 L+ + G P + ++G EADD+I T + V I + DKD+ QLV L + Sbjct: 2 LLHACVKGMGYPFLCVEGVEADDVIGTLARSSAAADRPVVISTGDKDMAQLVDGHITLVN 61 Query: 157 TVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE------ 210 T+ +D+ V +K+G+ PE ++ AL GD +DNIPG+PG+G KTA LL Sbjct: 62 TMTGSVMDVAGVKEKFGVGPEHIIDYLALMGDKVDNIPGVPGVGEKTAVGLLVGIGGGIK 121 Query: 211 --YGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCN 268 Y NL+ + R K + E+ E A LS +L ++ D +PL+ Sbjct: 122 ELYENLDKVASLPIR-GAKTLAAKLEEHREMAFLSYELATIKID----VPLD-------- 168 Query: 269 GPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKT 328 +E +L C E DRDT ++ Sbjct: 169 ----------IELDQL--------HC-----------------------GEPDRDTLMEL 187 Query: 329 S---QFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE 385 +F S + + ++++ Q+L +E +Y I+ W++KL+ Sbjct: 188 YAELEFKSWIEDLQR-DAKRAGQELTVEE----PTVEAREAAYEVILQQGQFDAWLKKLQ 242 Query: 386 TIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET---IFIDLSVHTSQDSTGK 442 +F ++ DA ++ + + SF ++T +I L+ S + Sbjct: 243 AAPLFAFVTQSNGTDAQRAQLVGL-----------SFAIQTHEAAYIPLT--HSYMGVPQ 289 Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--------HRYGISMRGFE-DIMLMS 493 +L LK E+ K+G + K+ +L GI ++G D +L S Sbjct: 290 QLDRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANCAIDGDQAQGIDLQGVRFDTILES 349 Query: 494 YVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550 YVLDS + HD S+ K+L++T +EI + D+I+ Q +A E +++ L Sbjct: 350 YVLDSTATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLSFDQIALEQAGNYAAEEADLTL 409 Query: 551 QLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609 +L + +L + L V ++ P++ V++++E G +D +LL S E+ + +L Sbjct: 410 RLHEVFDARLAAIPTLQPVLNDIEMPLVPVLARIERQGALVDANLLGIQSVELGDKMTAL 469 Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669 E + ++GE+FNL SPKQLG IL+ KL P +KT TGQ T L ++ D P+ K Sbjct: 470 EREAFAIAGEEFNLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPK 529 Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729 ++++R +SK+KSTY D LP IN RT R+HT Y A +TGRL+S +PNLQNIPI+T Sbjct: 530 VLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNLQNIPIRTAE 589 Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789 G++IR+AF++P KL++ADYSQIELRI+AH+A+ L F N LD+HR AAE+FGV Sbjct: 590 GRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVE 649 Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849 +E V+ MRR AK INF +IYG+S F LA Q+ + R ++ Y+ RYF R+PG+ Y+E+T Sbjct: 650 LENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERT 709 Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 + + G+VETIFGRR++ +IN+ S+R ER AINAP+QG+AADI ++AM++V+ Sbjct: 710 RAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNG 769 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 L++ L +++LQ+HDELV EV E+ + S+ I M A L VPL V + V Sbjct: 770 WLDESGLDARVILQVHDELVLEVREDLVDQVSEQIRPHMSGAA----ELAVPLLVEVGVG 825 Query: 970 NNWQE 974 NNW E Sbjct: 826 NNWDE 830 >gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] Length = 972 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 328/1001 (32%), Positives = 522/1001 (52%), Gaps = 73/1001 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG + YRAF+A R G P A+ GF + + ++ + E + AV F Sbjct: 8 LLLIDGHALAYRAFHALAEAGLRSSTGEPTYAVYGFTSAMLNAIEEYQPE----YAAVAF 63 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+++Y +YKANR + P QL ++ AF IP +G+EADD+I T Sbjct: 64 DV-GKTFRDDLYAEYKANRAETPAEFEQQLERIKQVLAAFDIPIYTAEGYEADDVIGTLA 122 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTC-------LYDTVKEEKIDIEHVIKKW-GIPPE 177 A + G V I++ D D +QLV L + + V +++ G+ P Sbjct: 123 RQATERGVDVLILTGDTDTLQLVDDHVTVLLNNPYLRGPKNTTRYGVAEVTERYKGLRPH 182 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE-Y 236 ++ L+ L GD DNIPG+ GIG A LL ++G +EN+ + + KR + LE Sbjct: 183 QLADLRGLKGDPSDNIPGVKGIGEAGAIALLNQFGTIENLYDHLD--EAPKRYQKHLEGQ 240 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCD 295 + A S+KL + D P+T+ L L D + R+I+ + LEF L+ R+ + Sbjct: 241 RDIALFSKKLATIVCDAPVTLNLADATLADYDRSRVIAVFQELEFGASLVKRLPPSGSTT 300 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 A P + + D ++ F+ + + ++E PQ+L L Sbjct: 301 VAQPLPSI--------------PQADASAPLQADMFAPEAPAVRESSAE--PQQLTLFGD 344 Query: 356 QKLSQYPINN---------DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406 ++ P+ + Y D++ V +L T +F T M+ Sbjct: 345 PEVVPPPVAHVEAPLRAAPGEYRAACTDADLEAVVAELATAPLVAFDTETRGMNPLRDDL 404 Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKI 465 + ++++T+ + +I + HT TG+ L ++ +++ L+ FF + K+ Sbjct: 405 VGLSLATVPGR--------AWYIPVG-HT----TGEMQLPRDRVIAALRSFFADPARPKV 451 Query: 466 GHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA----SIAQKWLSYTRKEI 520 HN K+D VL R G+ + G D ML + +LD R+ D+A +A+ + ++ Sbjct: 452 AHNAKFDIEVLERAGMPVAGLSFDTMLAAGLLDKRRNLKDLAFYELELAEPLDAI--GDL 509 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDV 579 + K+ + ++ ++ +A ++++ L+L L KL L ++ RL+ P++ V Sbjct: 510 IGKGKNQVTFAEVPIARATRYAAADADMTLRLQPALEAKLRAAGSLADMFYRLEMPLVPV 569 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT-KLK 638 + +ME +GI +D ++ + + + L +E+ I+ ++G+ FN++S QL ++LF K+ Sbjct: 570 LVRMEQSGILLDVPYMRALGERMGRELAQIEQQIFAIAGKPFNINSGDQLSEVLFGPKIN 629 Query: 639 FPSGA--KTKTGQWKTTAQDLEQINCGDN-PIIKNILEWRQLSKIKSTYADSLPNHINKR 695 P+ +T+TG++ TAQ LE++ D II+ IL R+LSK+KSTY D LP +N Sbjct: 630 LPTTGLERTRTGRYSLTAQALEELQASDTTGIIELILRHRRLSKLKSTYVDELPALVNPE 689 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T RVHT Y+ TGRL+S PNLQNIP +T+ G+++RR FI+ P LI+ADYSQIEL Sbjct: 690 TGRVHTDYNQLGAATGRLSSNSPNLQNIPTRTEEGREVRRGFIAAPGHVLIAADYSQIEL 749 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 R+LAHI L Q F DIH AA +FGV V RR AKT+ F +IYGISPF Sbjct: 750 RVLAHITGDPNLIQTFIEGRDIHAATAARLFGVGFNAVDKNQRRIAKTVVFGVIYGISPF 809 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA +L I R +A + I F++FP I +YI++T R GYV+++FGRR ++ + Sbjct: 810 GLAQRLGISREQARNLIDSLFNQFPRIRDYIDRTLETGRNEGYVQSLFGRRRPMFDLRT- 868 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 R ER AIN PIQ +AADI + AMI+V L +L T+MLLQ+HDEL+FE PE Sbjct: 869 SGPRRQAAEREAINHPIQSTAADIMKLAMIAVDAELRRRRLRTRMLLQVHDELIFEAPEA 928 Query: 936 EITTASQIIVHSMEKACLPKIN--LRVPLKVNIKVSNNWQE 974 E+ ++ ME L ++ VPL+V I+ +NW+E Sbjct: 929 EVDEVVALVRERME-GVLSDMHPPFAVPLRVEIEKGSNWEE 968 >gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803] gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803] Length = 986 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 350/1023 (34%), Positives = 528/1023 (51%), Gaps = 103/1023 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L LVDG S +RA+YA L R G+P + GF N L +++++ + +IA Sbjct: 10 LLLVDGHSLAFRAYYAFGLSKKGPLRTTAGIPTSVCFGFLNSLMQVMESQKPAAIA---- 65 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR+E YK+NR + PE L ++ +A + I G+EADDI+ Sbjct: 66 IAFDRREPTFRHEADGAYKSNRQETPEDFAEDLSYLQQLLEALNLQTITYAGYEADDILG 125 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLYDT-------VKEEKIDIEHVIKKW 172 T G+ V I+S D+DL QLVSP + LY T +++D + V+ K Sbjct: 126 TLACQGSDAGYQVKILSGDRDLFQLVSPEKNISVLYLTRNPFSSNTGYDELDWQGVVDKM 185 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRR 230 G+ P ++V +AL GD D IPGI GIG KTA LL EY LE + N ++IK K R Sbjct: 186 GVTPAQIVDFKALCGDKSDCIPGINGIGEKTAIKLLAEYETLEKVYENLAQIKGALKTRL 245 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 +N + A S+ L + DVP+ + E L L + RL+ L+ LE I+++ Sbjct: 246 DN---GKDDAMHSQMLARIVVDVPLPVTWEDLQLTGFSTDRLVPLLEKLELRTFIDKIQA 302 Query: 291 TYDCDAANIEPVVL--DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348 + + N PV + + + E K + SQ SL D +N E Sbjct: 303 FHRNFSDNQSPVPMGNEADNGEPKKTVKAKKSKEKVNPDDSQQLSLFDGVPVVNQED--- 359 Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII----TDTMDAFHS 404 L +L K Q I I ++ V++L+ A F + TD++D + Sbjct: 360 GLITIQLPKQIQPQI-------ITTIAQLEALVEELKKHTDADFPVAWDTETDSLDPLVA 412 Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464 + I + + + ++ I L H G+ I L + N + K Sbjct: 413 NLVGIGCAWGQEPNQVAY------IPLKHHQ-----GEQLSLGIIKDLLGEILGNAIYPK 461 Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW------LSYTR 517 + N K+D+ VL +GI + G D ML SYVL +H++ + +++ LSY Sbjct: 462 VLQNAKFDRRVLAHHGIELGGVVLDTMLASYVLQP-EETHNLTDLCRRYNLGLVALSYKD 520 Query: 518 KEILKSRK-SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-----KLLHVYER 571 + K + + +P+ E A + + LL KL E +L + + Sbjct: 521 LGLKKDQTIADLPL---------ETAGQYCGLDCYATYLLASKLQKELDQYPELKEILKE 571 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 +++P+ +++ ME GI+ID D L+ +S ++++NLL++E Y+ +GE FNLSSPKQLG Sbjct: 572 IEQPLEKILAAMEDRGIRIDCDYLQTLSQQLAENLLTIETAAYEAAGESFNLSSPKQLGT 631 Query: 632 ILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689 ILF KL KTKTG + T LE++ GD+PII ILE R L+K+KSTY D+LP Sbjct: 632 ILFDKLGLDRKKSRKTKTG-YSTDHATLEKLQ-GDHPIIDAILEHRTLAKLKSTYVDALP 689 Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 +N +TQR+HT ++ A T TGRL+S PNLQNIPI++D ++IRRAF+ L+SAD Sbjct: 690 ELVNGQTQRIHTDFNQAVTSTGRLSSSNPNLQNIPIRSDFSRQIRRAFLPQKDWLLVSAD 749 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELRILAH+++ L Q + + D+H + A +FG E ++P R KTINF +I Sbjct: 750 YSQIELRILAHLSQEPVLLQAYGDRQDVHGVTAKLLFGK--EDITPAERNLGKTINFGVI 807 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YG+ R A + I E ++I RY + + +Y+E K GYV TI GRR ++ Sbjct: 808 YGMGAQRFARETGISAVEGREFIDRYHRTYAQVFDYLETMKLEAIAKGYVTTIVGRRRYF 867 Query: 870 DEINSPKSSIR--------------NINE----RAAINAPIQGSAADITRRAMISVHKSL 911 + + +R N N+ R+A NAPIQGS+ADI + AM+ + K L Sbjct: 868 NFVTEALRQLRGKTVTELDLVDVKMNYNDAQLLRSAANAPIQGSSADIIKIAMVKLAKLL 927 Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 E ++ T+MLLQ+HDEL+FE+P EE + +I ++ME+A + L VPL V + +N Sbjct: 928 ESYQ--TRMLLQVHDELIFEMPPEEWEELAPLIQNTMEQA----LTLSVPLVVEMHRGSN 981 Query: 972 WQE 974 W E Sbjct: 982 WME 984 >gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] Length = 876 Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust. Identities = 327/989 (33%), Positives = 515/989 (52%), Gaps = 141/989 (14%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI-F 65 L ++DG S ++RAFYA P L+ +G+ NA+ GF NML K+ KE I + V F Sbjct: 6 LLILDGHSLMHRAFYALPDLTN-LEGVHTNAVYGFLNMLLKM-----KEEIKPDYVVCTF 59 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR+ Y +YKA R K+P L Q P+++ + + EI GFEADD++ T + Sbjct: 60 DRSAPTFRHNKYSEYKAGRKKMPPELSEQFPVIKEILKMMSVSIFEIDGFEADDLMGTLS 119 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVC 181 AEK G V I++ D+D +QL + + T K +E D +I+++G+ P + + Sbjct: 120 VFAEKNGIQVYIVTGDRDALQLATDKVKIVITKKGITQKEIYDRNRMIEEYGVTPTQFID 179 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GD+ DNIPG+PG+G KTA L IKQ K EN+ E Sbjct: 180 VKGLMGDTSDNIPGVPGVGEKTAFKL----------------IKQYKSIENVYEN----- 218 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK-ALEFTKLINRVATTYDCDAANIE 300 +ED +G +L LK +E ++AT N+ Sbjct: 219 ----------------------VEDISGKKLKENLKDNMEQAIFSKKLATI----MTNV- 251 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 PV +D+ + E+K E D K + SKI+ QK K + Sbjct: 252 PVEMDLESIESK-----EEYDAQGLKKVFEKLEFKSLISKIHGLNEIQK------DKAQE 300 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 + + +T+I +V L+ ++ + I D++ + Sbjct: 301 FDV---EFTEIDTLHKFSDFVNSLK-----------------NNDLVYINFKVEDEESYS 340 Query: 421 SFKVETIFIDLSVHTSQDSTGK--NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 ++ +FI L+ Q + N + + K FENE K+G+++K +L++ Sbjct: 341 RNYIDKVFISLNEKNFQIHINEIYNEDKNKAVELFKLLFENEGISKVGYDVKVPCSILYK 400 Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS----------YTRKEILKSRKSS 527 GI E DI + +Y++DS RS +++ I +++ ++++ +L S+ S Sbjct: 401 MGIRFLKLEFDIKIAAYLIDSSRSDYELKDIIRQYTGVEISEDDEKFFSKETVLFSKVYS 460 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 KI ++ ++E LL+ ++++P+I V++ ME G Sbjct: 461 ELTKKIEEAHMEE------------------------LLY---KVEQPLIYVLASMECEG 493 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 ++D+D L + + + +++ IY LS E+FN++SPKQLG ILF KL P KTKT Sbjct: 494 FKVDKDKLVEQEGKFKIEIDKVQKEIYSLSEEEFNINSPKQLGKILFEKLDLPVIKKTKT 553 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G + T A+ LE++ +PI++ I+ +RQL+K+ STY + L I + ++H+ ++ Sbjct: 554 G-YSTNAEVLEKLK-DKHPIVEKIIYYRQLTKLYSTYIEGLKAVI-QEDDKIHSSFNQTV 610 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKIT 765 T TGRL+S EPNLQNIPIK ++G++IR+ F+ P + ++SADYSQIELR+LAHIA Sbjct: 611 TTTGRLSSTEPNLQNIPIKYEMGKEIRKIFV-PENEDCVILSADYSQIELRVLAHIADDE 669 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F N DIH A+E+F V I++V+ R +AK +NF I+YGI F LA L+I R Sbjct: 670 NLISAFINHSDIHTKTASEVFKVPIDEVTSAQRSNAKAVNFGIVYGIGDFSLAKNLKISR 729 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA YI YF R+P + Y++ + N YV T+ RR EI S +R+ ER Sbjct: 730 KEAKLYIDTYFERYPKVKLYMDDIVKEAKVNSYVTTLMNRRRFIPEIKSSNKIVRSFGER 789 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 A+N PIQGSAADI + AM++V++ LE++KL +K++LQ+HDEL+ V +EEI ++ Sbjct: 790 LAMNTPIQGSAADIIKIAMVNVYRRLEENKLKSKLILQVHDELILNVYKEEIDNVKSVVK 849 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 MEK + L+VPL+V+I V +NW E Sbjct: 850 EEMEKV----LQLKVPLEVDISVGSNWYE 874 >gi|332705531|ref|ZP_08425609.1| DNA polymerase I [Lyngbya majuscula 3L] gi|332355891|gb|EGJ35353.1| DNA polymerase I [Lyngbya majuscula 3L] Length = 996 Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust. Identities = 341/1016 (33%), Positives = 527/1016 (51%), Gaps = 94/1016 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L L+DG S +R+++A R G+P + GF L +++++ +IA Sbjct: 25 LILIDGHSLAFRSYFAFAKSRQGGLRTKTGIPTSVCFGFIKSLLEVMESENPNAIA---- 80 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR + YKANR + PE LP + ++ Q IP I G+EADD++A Sbjct: 81 IAFDTKEATFRQQADATYKANRTETPEDFLPDVKNLQQLLQGLRIPVITSPGYEADDVLA 140 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---------DTVKEEKIDIEHVIK 170 T + A +G+ V ++S D+DL QLV+P T LY TV + +E V Sbjct: 141 TLAHQAIDQGYRVKVVSGDRDLFQLVAPDKGITVLYLSGPFSRGSATVGPTEYGLEEVEA 200 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K G+ P ++V +AL GD DNIPG+ GIG KTA LL+EY NL+NI + IK ++ Sbjct: 201 KLGVLPSQVVDYKALCGDPSDNIPGVKGIGAKTAVKLLKEYQNLDNIYASLDTIKGAVKK 260 Query: 231 ENILEYAET-ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 + LE ++ A +R L LR D PI I L+ L+ + L L+ LE I+++ Sbjct: 261 K--LEVGKSDAEHARYLAQLRFDTPIDIDLDQCQLQGFDPQVLKPLLERLELKSFISQI- 317 Query: 290 TTYDCDAANIEPVVL-DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348 D VVL DI T+ +T + D+ T + D S + +T Sbjct: 318 ---DKLQQRFGGVVLEDIETSAPNDTVSDTVSNTDSDTDTQE----DDDISFFSVAET-- 368 Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 E Q+ Q +I++T D + Q V++L+ A + DT Sbjct: 369 ----EEFQE--QGSNTGSIQPQIIDTVDKLNQLVEQLKYYTDAGNPVAWDT--------- 413 Query: 408 AIAISTLDQKDDTSFKVETI----FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463 S L+ +D + F D++ G N +L L+ E+ + Sbjct: 414 --ETSDLEPRDAQLVGIGCCWGKEFTDVAYIPIGHKDGTNLDKDIVLESLRPILESSDYP 471 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ N K+D+LVL GI + G D ML SYVL+ +SH ++ + +L + Sbjct: 472 KVLQNSKFDRLVLRCNGIQLAGVVFDTMLASYVLNP-ETSHKLSDLGLHYLGIEAQSYND 530 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVS 581 I + V ++ ++ + LR +L + L + +++P+ V++ Sbjct: 531 LVPKGKTIRDLDIPTVADYCGMDAYTTFGIVFKLREELEQIPALQQLLLEVEQPLEPVLA 590 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP- 640 +ME GI+ID+D L+Q S E+ K+L+++++ Y +GE+FNL SPKQL +LF KL Sbjct: 591 EMEYQGIRIDKDYLQQFSQELEKDLVAIKQQAYQDAGEEFNLGSPKQLSQLLFEKLGLDR 650 Query: 641 -SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 KTKTG + T A L ++ GD+P++ I+E+R LSK+KSTY D+LP + T+RV Sbjct: 651 RKSRKTKTG-YSTDATILAKLQ-GDHPVVDAIVEYRSLSKLKSTYVDALPALMRSDTKRV 708 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 HT ++ T TGRL+S PNLQNIPI+TD ++IR+ FI L+SADYSQIELRILA Sbjct: 709 HTDFNQTVTTTGRLSSSSPNLQNIPIRTDFSRQIRKGFIPESGWLLVSADYSQIELRILA 768 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+++ L + ++ D+H + A +F + E ++ + RR K INF +IYG+ R A Sbjct: 769 HLSQEPVLVEAYQTQADVHTLTAQMLF--DKEDITAEERRLGKIINFGVIYGMGAQRFAR 826 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY---------- 869 + ++ +E ++I R R+P + Y+E+TK GYVETI GRR ++ Sbjct: 827 EAKVSTAEGKEFIDRLNQRYPLVFAYLEETKKKAIAQGYVETILGRRRYFSFGGNSLRRL 886 Query: 870 -----DEINSPKSSIRNINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 D+I+ K +++IN RAA N+PIQGS+ADI + AMI +++ L+ +K Sbjct: 887 QGKPLDQIDLDK--LKSINPYDAGSLRAAANSPIQGSSADIIKIAMIKLYQELQKYK--A 942 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++LLQ+HDEL+FE+P +E I +ME A + L VPL V I +NW E Sbjct: 943 RLLLQVHDELIFEIPPDEWEELQLKIRETMESA----VELTVPLVVEIHAGDNWME 994 >gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05] Length = 970 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 341/1016 (33%), Positives = 529/1016 (52%), Gaps = 111/1016 (10%) Query: 10 VDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +DG S +RA+YA PL R G+P + GF N L ++++ + E IA + Sbjct: 13 IDGHSLAFRAYYAFAKARRGPL--RTSTGIPTSICFGFLNSLIQVIKLEKPEYIA----I 66 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E +YKA+R + PE +P + ++ +A I I G+EADDI+ T Sbjct: 67 AFDSSEPTFRHEADVNYKADRKETPEDFIPDIQNLQRLLEALNITIITAPGYEADDILGT 126 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKEE------KIDIEHVIKK 171 + G+ V I++ D+DL QLV+ + LY + V+ + + V +K Sbjct: 127 VANRGTENGYRVKIVTGDRDLFQLVNDQNNLSVLYLERNAVRSSSGEGYTEFKFDDVTEK 186 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 GI P +++ +AL GD DNIPGI GIG KTA LL EY LE + N IK +++ Sbjct: 187 MGIKPTQVIDYKALCGDKSDNIPGIRGIGDKTAVKLLNEYETLEEVYNNIEAIKGANKKK 246 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 E S+ L + TD P+ +E+ L+ N + L+ LE K + + Sbjct: 247 LKEGKKEAEH-SQFLAKIVTDAPLDFEIENCELKGFNFDAVKPILENLELKKFVKEINQL 305 Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351 + NI + +IDR T + S F S S Q +N + +K Sbjct: 306 QEHFGGNIT-------------LEFHDKIDRSETHQLSLFDSSSTQVETVNKIEEEKKES 352 Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT----MDAFHSKPI 407 L + Q +++ + +++ V KL T + + + DT ++ ++ + Sbjct: 353 LIKPQIITE-------------IEQLEELVNKLVTYTNGNIPVAWDTETTALNPREAELV 399 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 I ++ D ++ + + Q GK +++L L+ E+ ++ K+ Sbjct: 400 GIGCCWGNKPTDIAY--------IPIAHKQ---GKQLRKEQVLDRLQSILESNNYPKVFQ 448 Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL----SYTRKEILK 522 N K+D+L+ GI++ G D ML SYVL +S H ++ + +++L S K++ Sbjct: 449 NTKFDRLIFKHQGINLDGVVLDTMLASYVLHPEKS-HKLSELCEQYLEGITSLDYKDLGI 507 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL----DKPMID 578 +K +I +D ++ A +LL+ P K L ++L ++P+ Sbjct: 508 GKKQTI-----ADLDIETVAEYCGMDAYATFLLVEPLKNELKTLSTLDKLLLEVEQPLEP 562 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V++ ME TGI ID + L ++S E+ ++LLSLEEN Y +GEKFNL SPKQLG ILF KL+ Sbjct: 563 VLAIMEDTGIIIDSEYLGKLSKELEQHLLSLEENAYQAAGEKFNLGSPKQLGHILFEKLE 622 Query: 639 F--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 KTKTG + T LE++ GD+PII ILE+R LSK+KSTY D+LP ++K Sbjct: 623 LNRKKSRKTKTG-YSTDHATLEKLK-GDHPIIDYILEYRTLSKLKSTYIDALPELVDKID 680 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 QR+HT ++ + T TGRL+S PNLQNIPI+T+ ++IR+AFI L+SADYSQIELR Sbjct: 681 QRIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFSRQIRQAFIPQQDWLLVSADYSQIELR 740 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 ILAH+++ L ++N+ D+H + A +F + E+++PQ R KTINF +IYG+ R Sbjct: 741 ILAHLSQEQVLLNAYKNADDVHSVTARLLF--DKEEITPQERTLGKTINFGVIYGMGSQR 798 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 A + + E ++I +Y R+ + +Y+E K NGYV TI GRR +++ + Sbjct: 799 FAREAGVSAVEGKEFINKYRQRYAKVFDYLESMKKEAIANGYVTTILGRRRYFNFFDDNL 858 Query: 877 SSIR------------NINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 R NIN RAA NAPIQGS+ADI + AM+ + + L++++ Sbjct: 859 YRFRGHDPQNIDLNKININYNDSQLLRAAANAPIQGSSADIIKIAMVKIQEILDNYQ--A 916 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +LLQ+HDELVFE+P +E I +ME A + L VPL V I NW E Sbjct: 917 NLLLQVHDELVFEIPHQEWEELEDKIKETMENA----VTLTVPLVVEINTGKNWME 968 >gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 900 Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust. Identities = 316/979 (32%), Positives = 504/979 (51%), Gaps = 104/979 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+LVD S +++RA++A LS G P +A G ML KL+ + RK + + V D Sbjct: 17 LYLVDLSGYVFRAYHAISPLS-SPSGEPTHATYGTVAMLTKLV-DERKPA---YLGVAMD 71 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+E+ P YKA+RP P L Q+ R +A+ IP +G EADD++A Sbjct: 72 SPGKTFRDELDPRYKAHRPPPPPDLGVQMSRCREIVEAYRIPIFIQEGLEADDLVAVAVA 131 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A++ G V I S+DKDLMQLV L+D ++++ V+ K+G+PPE++ L AL Sbjct: 132 RAKERGLRVVIASSDKDLMQLVDGEQVMLWDAMRDKVYGHPEVVAKFGVPPEQVRDLLAL 191 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GD+ DN+PG+PG+G KTAA LL ++G+L I RI + K+ Sbjct: 192 VGDTSDNVPGVPGVGLKTAAELLAQFGSLSAIY---ERIGEVKK---------------- 232 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 PR+ L+ E +++ T D A PV LD Sbjct: 233 ------------------------PRIRESLQQNEADARLSQKLVTLDGGA----PVSLD 264 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP--- 362 + T G DT F+ L R K + P Sbjct: 265 LETLRYGGA--------DTGRLRELFTELG----------------FSRFLKAVRAPEPT 300 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 +Y + ++++ + + G + ++ + + + +A++ Sbjct: 301 ARAATYRVLTTREELEGFARSARAAGRLALDVLATSREPMSAHVCGVALACEPG------ 354 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 + +++ L H + + +++ +I + + + K+GH++K+ +++L R+ I Sbjct: 355 --QAVYVPLG-HRYLGAPAQLSMS-DIDAVMGPLLADPELPKVGHDVKFCEVILLRHRIG 410 Query: 483 MRGFE-DIMLMSYVLD-SGRSS-HDIASIAQKWLSYTRKEILKSRKSSI--PIDKISDSQ 537 + G D ML SY+LD G++ H++A T E+ R+ +D+I + Sbjct: 411 LVGVSFDTMLASYLLDPEGKNQLHELAERELGAKMQTLDEVAPKRRGQAQRALDEIELGE 470 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 + ++V L L LRP+L EKL + +++ P+ V+++ME+TG+ +D L Q Sbjct: 471 ASSYGAAFADVALSLTDRLRPRLRAEKLEDLLVQIELPLSAVLAEMELTGVLVDPQALAQ 530 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 + A+++ L +LE+ ++ G NL+SPKQL +LF +LK S KTKTG ++T D+ Sbjct: 531 LGAQMTTELAALEQKAREIVGHDINLASPKQLEAVLFDELKLRSQRKTKTG--RSTDADV 588 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 + ++P +LE R ++K+K TY D+LP ++ T R+HT + A TGRL+S + Sbjct: 589 LEALSEEHPFPGVVLEHRAIAKLKGTYVDALPRLVHPGTGRIHTRWGQAVAATGRLSSQD 648 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+T+LG+ IRRAF++PP ++SADYSQIELR+LAH++K L F D+ Sbjct: 649 PNLQNIPIRTELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFRTGQDV 708 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H A EIFGV+ V+ +MRR +KTINF +IYG+ LA +L I R+EAA +I YF Sbjct: 709 HVRTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMGESALAKRLDISRAEAARFIDAYFA 768 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+ G+HE++E T +++ V T+ GRR ++ S R ER A N PIQG+AA Sbjct: 769 RYRGVHEFMEGTMAEAKRSESVRTLLGRRRLLPDLRSSDRMRRAQAERIAQNTPIQGTAA 828 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 D+ + AM+ V + + +M+L +HDEL FEVP E + A + +ME Sbjct: 829 DLLKLAMVRVPRPVVP---GARMVLTVHDELAFEVPAEAVDEAKAKVREAMESV----FP 881 Query: 958 LRVPLKVNIKVSNNWQEEN 976 L VPL V++ W + + Sbjct: 882 LDVPLVVDVGHGPTWADAH 900 >gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501] gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501] Length = 970 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 339/1016 (33%), Positives = 528/1016 (51%), Gaps = 111/1016 (10%) Query: 10 VDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +DG S +RA+YA PL R G+P + GF N L ++++ + E IA + Sbjct: 13 IDGHSLAFRAYYAFAKARRGPL--RTSTGIPTSICFGFLNSLIQVIKLEKPEYIA----I 66 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E +YKA+R + PE +P + ++ +A I I G+EADDI+ T Sbjct: 67 AFDSSEPTFRHEADVNYKADRKETPEDFIPDIQNLQRLLEALNITIITAPGYEADDILGT 126 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKEE------KIDIEHVIKK 171 + G+ V I++ D+DL QLV+ + LY + V+ + + V +K Sbjct: 127 VANRGTENGYRVKIVTGDRDLFQLVNDQNNLSVLYLERNAVRSSSGEGYTEFKFDDVTEK 186 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 GI P +++ +AL GD DNIPGI GIG KTA LL EY L+ + N IK +++ Sbjct: 187 MGIKPTQVIDYKALCGDKSDNIPGIRGIGDKTAVKLLNEYETLDEVYNNIEAIKGANKKK 246 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 E S+ L + TD P+ +E+ L+ N + L+ LE K + + Sbjct: 247 LKEGKKEAEH-SQFLAKIVTDAPLDFEIENCELKGFNFDAVKPILENLELKKFVKEINQL 305 Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351 + NI + +IDR T + S F S S Q +N + +K Sbjct: 306 QEHFGGNIT-------------LEFHDKIDRSETHQLSLFDSSSTQVETVNKIEEEKKES 352 Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT----MDAFHSKPI 407 L + Q +++ + +++ V KL T + + + DT ++ ++ + Sbjct: 353 LIKPQIITE-------------IEQLEELVNKLVTYTNGNIPVAWDTETTALNPREAELV 399 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 I ++ D ++ + + Q GK +++ L+ E+ ++ K+ Sbjct: 400 GIGCCWGNKPTDIAY--------IPIAHKQ---GKQLRKEQVFDRLQSILESNNYPKVFQ 448 Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL----SYTRKEILK 522 N K+D+L+ GI++ G D ML SYVL +S H ++ + +++L S K++ Sbjct: 449 NTKFDRLIFKHQGINLDGVVLDTMLASYVLHPEKS-HKLSELCEQYLEGITSLDYKDLGI 507 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL----DKPMID 578 +K +I +D ++ A +LL+ P K L ++L ++P+ Sbjct: 508 GKKQTI-----ADLDIETVAEYCGMDAYATFLLVEPLKNELKPLSTLDKLLLEVEQPLEP 562 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V++ ME TGI ID + L ++S E+ ++LLSLEEN Y +GEKFNL SPKQLG ILF KL+ Sbjct: 563 VLAIMEDTGIIIDSEYLGKLSKELEQHLLSLEENAYQAAGEKFNLGSPKQLGHILFEKLE 622 Query: 639 F--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 KTKTG + T LE++ GD+PII ILE+R LSK+KSTY D+LP ++K Sbjct: 623 LNRKKSRKTKTG-YSTDHATLEKLK-GDHPIIDYILEYRTLSKLKSTYIDALPELVDKID 680 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 QR+HT ++ + T TGRL+S PNLQNIPI+T+ ++IR+AFI L+SADYSQIELR Sbjct: 681 QRIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFSRRIRQAFIPQQDWLLVSADYSQIELR 740 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 ILAH+++ L ++N+ D+H + A +F + E+++PQ R KTINF +IYG+ R Sbjct: 741 ILAHLSQEQVLLNAYKNADDVHSVTARLLF--DKEEITPQERTLGKTINFGVIYGMGSQR 798 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 A + + E ++I +Y R+ + +Y+E K NGYV TI GRR +++ + Sbjct: 799 FAREAGVSAVEGKEFINKYRQRYAKVFDYLESMKKEAIANGYVTTILGRRRYFNFFDDNL 858 Query: 877 SSIR------------NINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 R NIN RAA NAPIQGS+ADI + AM+ + + L++++ Sbjct: 859 YRFRGHDPQNIDLNKININYNDSQLLRAAANAPIQGSSADIIKIAMVKIQEILDNYQ--A 916 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +LLQ+HDELVFE+P +E I +ME A + L VPL V I NW E Sbjct: 917 NLLLQVHDELVFEIPHQEWEELEDKIKETMENA----VTLTVPLVVEINTGKNWME 968 >gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135] gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135] Length = 919 Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust. Identities = 343/986 (34%), Positives = 533/986 (54%), Gaps = 89/986 (9%) Query: 6 HLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 ++L+D + I+R ++ PL ++K G VNA GF L+ ++ KE + Sbjct: 3 EIYLIDALNIIFRNYHVMKNNPLTNKK--GENVNAFIGFFKTLFFII----KEKNPENLI 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR + YP YKA R P+ L+PQ+ ++ + IP EIQG+EADD+IA Sbjct: 57 VTFDSETQTFRQQKYPSYKATRDAPPDNLIPQIYWIKESLIKANIPMFEIQGYEADDLIA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180 ++ AE + IIS DKDL+QL+S T + ++D ++V+KK+G+ ++ Sbjct: 117 SFAKKAEINNYLTYIISPDKDLLQLMSAKTKILKIENSSFVEMDNDYVMKKFGVNKSQIK 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++ GD DNIPGI GIG K AA LL E+ L I N I K RE +L+ E A Sbjct: 177 DYLSIVGDRSDNIPGIKGIGEKGAAKLLNEFQTLNGIYDNLDSINNK-YREILLKERENA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +L+ L D+ + LE LE+ L+ F + T LI T A Sbjct: 236 FLSYELISLVEDLELP-ALEKFKLENLKEDILLLF-EEYSATTLIKSYKTILKKRYA--- 290 Query: 301 PVVLDINTTENKGIAIETEIDR-DTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 T + + ET I++ DT I L TS N+ +T Q+ Sbjct: 291 -------TNQTQKSLFETNINQTDTEI-------LQTTTSHSNALKTIQE---------- 326 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 N Y I+ + + ++KL+ + T +++ ++ I I++S Sbjct: 327 ----ENIKYETILKKEQLDLLIEKLKQANYVAIDTETTSLNVHEAQIIGISVS------- 375 Query: 420 TSFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 FK E+ +I + ++ K T+ K I+ +FF+ + L IG N K+D +L Sbjct: 376 --FKEFESYYIPI------ETKEKKTIEKAYIIQKFNEFFKAQPKL-IGQNYKFDYKILK 426 Query: 478 RYGIS-MRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR---KEILKSRKS--SIPI 530 ++ + + + D M+ +YV+D + + S D +A+K+L + +EI+ + IP+ Sbjct: 427 KHEFNVIPPYFDTMIAAYVIDPNTKVSLDF--LAEKYLMHKNIRYEEIVAQNGTLKDIPL 484 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 + +S+ +A E++++ +L+ + KL + L ++ ++ P +V+++ME GI + Sbjct: 485 EMVSN-----YAAEDADITFRLFKIFTKKLKEDNLENLMTDIEMPFSNVITEMEENGIYL 539 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTG 648 D+D L+Q E+ K L +E I G +FNL+S KQL +LF +L P K Sbjct: 540 DKDYLRQYGYELDKELKLIENEIIKSIGIEFNLNSTKQLHTVLFERLNLVLPQNVK---- 595 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 Q T + LE I I K ++++RQ++K+K+TY D+L +N++T ++HT + T Sbjct: 596 QDSTDIKVLETIKEQHESIPK-LIQYRQIAKLKNTYTDNLIEFVNEKTNKIHTNFIQTKT 654 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGR++S PNLQNIPIK + G+KIR AF ISADYSQIEL ILAH+++ L Sbjct: 655 ATGRISSTSPNLQNIPIKDEKGRKIREAFKPEKGNIFISADYSQIELVILAHLSEDESLI 714 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F+N DIH A+++F V+ EKV+ MRR AK+INF IIY +S FRL+ +L I R EA Sbjct: 715 EAFKNKKDIHIKTASQLFKVDEEKVTSSMRRIAKSINFGIIYRMSAFRLSKELSIKREEA 774 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +I YF+ + I +I+ +FVR+NGY ET+ RR + EINS S R+ ER AI Sbjct: 775 QKFIDSYFNLYSKIKTFIQNQIDFVRKNGYSETLLKRRRYIKEINSQNYSERSGAERIAI 834 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 N+ IQGSA+DI + AMI V+ L+ L +K+LLQ+HDE++ E PE+E ++II M Sbjct: 835 NSTIQGSASDIMKIAMIKVYNELKSKNLKSKILLQVHDEMLIESPEQECEEVNKIIKTMM 894 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A P L++PLKVNI+ +W E Sbjct: 895 ENAY-P---LKIPLKVNIETGKSWGE 916 >gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly] gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly] Length = 922 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 341/985 (34%), Positives = 538/985 (54%), Gaps = 90/985 (9%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 ++L+D + I+R ++ PL + K G V+A GF L+ +++ + E++ V Sbjct: 4 IYLIDALNIIFRNYHVMKNNPLTNSK--GENVSAFIGFFKTLFFIIKEKKPENLI----V 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR + YP YKA R P+ L+PQ+ ++ IP E+QG+EADD+IA+ Sbjct: 58 TFDSETQTFRQKQYPSYKATRDAPPDNLIPQIHWIKEGLIKANIPMFELQGYEADDLIAS 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMVC 181 +T AE+ + IIS DKDL+QL+S T ++ +++ ++VIKK+GI ++ Sbjct: 118 FTKKAEQNNYLTYIISPDKDLLQLISNQTKIFKIENSSFLEMNNDYVIKKFGINKSQIKD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ GD DNIPGI GIG K A+ LL E+ L I N S I K RE +L E A Sbjct: 178 YLSIVGDPSDNIPGIKGIGQKGASKLLNEFHTLNGIYENLSLINNK-YREILLREKENAF 236 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN-IE 300 LS KL+ L D+ + LE LE+ ++ F + T + + + + N ++ Sbjct: 237 LSYKLISLVEDLELP-SLETFRLENLKEDIILLFEEYSATTLIKSYKSLLKKKNIINTMQ 295 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + DIN +T+ +++ T K Q ++L T K E+ Sbjct: 296 KSIFDIN---------KTKANKENT-KDLQSTTLYANTLKTIQEE--------------- 330 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I+ +++ +++L+ + T +++ + S I I++S Sbjct: 331 ----NVKYKTILKKEELDLLIEQLKKASYIAIDTETTSINVYESNIIGISVS-------- 378 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E+ +I + ++ KN++ KE I+ + F ++ L IG N K+D VL R Sbjct: 379 -FKEFESYYIPI------ETKEKNSIGKEYIIQKFNELFNSQPKL-IGQNYKFDYKVLKR 430 Query: 479 YGIS-MRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR---KEIL--KSRKSSIPID 531 +G + + + D M+ +YV+D + + S D +A K+L + +EI+ S IP++ Sbjct: 431 HGFNVISAYFDTMIAAYVIDPNTKVSLDF--LAAKYLMHKNIKYEEIVPQHSTLKDIPLE 488 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 S+ +A E++++ +L+ +LR KL + L + + ++ P +V+ +ME GI +D Sbjct: 489 IASN-----YAAEDADITFRLFNILRKKLKEDNLESLMKNIEMPFSNVIIEMEENGIYLD 543 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQ 649 + L Q E+ + L ++E + G +FNL+S KQL ILF KL P K Q Sbjct: 544 SNYLTQYGHELEQELKTIENEVIQSIGIEFNLNSSKQLHTILFEKLNIIVPKNVK----Q 599 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + LE I I K ++ +RQL+K+K+TY D+L IN++T ++HT + T Sbjct: 600 DSTDIKVLETIKDQHESIEK-LINYRQLAKLKNTYTDNLIEFINEKTNKIHTNFIQTKTA 658 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPL 767 TGR++S PNLQNIPIK + G+KIR AF PTK ISADYSQIEL ILAH+++ L Sbjct: 659 TGRISSTAPNLQNIPIKNERGRKIRAAF--KPTKGNIFISADYSQIELVILAHLSEDESL 716 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F + DIH A+++F V+ ++P MRR AK+INF IIY +S FRL+ +L I R E Sbjct: 717 IEAFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSINFGIIYRMSAFRLSQELSIKREE 776 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A ++I YF+ + I +I+ +FV+QNGY ET+ RR + EINS R ER A Sbjct: 777 AQNFIDSYFNLYSKIKTFIQNQIDFVKQNGYSETLLKRRRYIREINSQNYLERTGAERMA 836 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 IN+ IQGSA+DI + AMI V+ +++ L +K+LLQ+HDE++ E PEEE A QII+ Sbjct: 837 INSIIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLIESPEEECEKA-QIIIKE 895 Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972 M + P L++PLK NI+ +W Sbjct: 896 MMENAYP---LKIPLKTNIETGKSW 917 >gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1] gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1] Length = 922 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 339/983 (34%), Positives = 537/983 (54%), Gaps = 86/983 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 ++L+D + I+R ++ PL + K G V+A GF L+ +++ + E++ V Sbjct: 4 IYLIDALNIIFRNYHVMKNNPLTNSK--GENVSAFIGFFKTLFFIIKEKKPENLI----V 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR + YP YKA R P+ L+PQ+ ++ IP E+QG+EADD+IA+ Sbjct: 58 TFDSETQTFRQKQYPSYKATRDAPPDNLIPQIHWIKEGLIKANIPMFELQGYEADDLIAS 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMVC 181 +T AE+ + IIS DKDL+QL+S T ++ +++ ++VIKK+GI ++ Sbjct: 118 FTKKAEQNNYLTYIISPDKDLLQLISNQTKIFKIENSSFLEMNNDYVIKKFGINKSQIKD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ GD DNIPGI GIG K AA LL E+ L I N S I K RE +L E A Sbjct: 178 YLSIVGDPSDNIPGIKGIGQKGAAKLLNEFHTLNGIYENLSLINNK-YREILLREKENAF 236 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN-IE 300 LS KL+ L D+ + LE LE+ ++ F + T + + + + N ++ Sbjct: 237 LSYKLISLVEDLELP-SLETFRLENLKEDIILLFEEYSATTLIKSYKSLLKKKNIINTMQ 295 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 + DIN +T+ +++ T K Q ++L T K E+ Sbjct: 296 KSIFDIN---------KTKANKENT-KDLQSTTLYANTLKTIQEE--------------- 330 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I+ +++ +++L+ + T +++ + S I I++S Sbjct: 331 ----NVKYKTILKKEELDLLIEQLKKASYIAIDTETTSINVYESNIIGISVS-------- 378 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E+ +I + ++ KN++ K+ I+ + F ++ L IG N K+D VL R Sbjct: 379 -FKEFESYYIPI------ETKEKNSIGKDYIIQKFNELFNSQPKL-IGQNYKFDYKVLKR 430 Query: 479 YGIS-MRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR---KEIL--KSRKSSIPID 531 +G + + + D M+ +YV+D + + S D +A K+L + +EI+ S IP++ Sbjct: 431 HGFNVISAYFDTMIAAYVIDPNTKVSLDF--LAAKYLMHKNIKYEEIVPQHSTLKDIPLE 488 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 S+ +A E++++ +L+ +LR KL + L + + ++ P +V+ ++E GI +D Sbjct: 489 IASN-----YAAEDADITFRLFNILRKKLKEDNLESLMKNIEMPFSNVIIEIEENGIYLD 543 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 + L Q E+ + L ++E + G +FNL+S KQL ILF KL K Q Sbjct: 544 SNYLTQYGHELEQELKTIENEVIQSIGIEFNLNSSKQLHTILFEKLNIIVSKNVK--QDS 601 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T + LE I I K ++ +RQL+K+K+TY D+L IN++T ++HT + T TG Sbjct: 602 TDIKVLETIKDQHESIEK-LINYRQLAKLKNTYTDNLIEFINEKTNKIHTNFMQTKTATG 660 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQ 769 R++S PNLQNIPIK + G+KIR AF PTK ISADYSQIEL ILAH+++ L + Sbjct: 661 RISSTAPNLQNIPIKNERGRKIRAAF--KPTKGNIFISADYSQIELVILAHLSEDESLIE 718 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F + DIH A+++F V+ ++P MRR AK+INF IIY +S FRL+ +L I R EA Sbjct: 719 AFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSINFGIIYRMSAFRLSQELSIKRDEAQ 778 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 ++I YF+ + I +I+ +FV+QNGY ET+ RR + EINS R ER AIN Sbjct: 779 NFIDSYFNLYSKIKTFIQNQIDFVKQNGYSETLLKRRRYIREINSQNYLERTGAERMAIN 838 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 + IQGSA+DI + AMI V+ +++ L +K+LLQ+HDE++ E PEEE A QII+ M Sbjct: 839 SIIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLIESPEEECEKA-QIIIKEMM 897 Query: 950 KACLPKINLRVPLKVNIKVSNNW 972 + P L++PLK NI+ +W Sbjct: 898 ENAYP---LKIPLKTNIETGKSW 917 >gi|332300236|ref|YP_004442157.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707] gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707] Length = 948 Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust. Identities = 325/1005 (32%), Positives = 516/1005 (51%), Gaps = 103/1005 (10%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L+L+D + IYRA+YA PL+ + G +A+ GF + L ++ R + IA V Sbjct: 4 LYLLDAYALIYRAYYAFINRPLVDAQ--GRDTSALYGFASTLQDIIDKERPDYIA----V 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 D P TFR++ YP+YKANRP+ PE + +P ++ QA+ IP + ++G+EADD+I T Sbjct: 58 AIDMPGGTFRHKEYPEYKANRPETPETIRFSMPYIKELVQAYQIPLLGVEGYEADDLIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178 + A + G+ V +++ DKD QLV P ++ + E + E + K+GI P + Sbjct: 118 LSRQAVEAGYEVRMVTPDKDYGQLVGPHAQMFAPQRTGSGFELLGAEEITAKYGIRYPLQ 177 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 M+ L GDS DN+PG PGIG A LL+E+ ++E+I ++K ++ +L E Sbjct: 178 MIDYLGLVGDSSDNVPGCPGIGKVAAQRLLEEFDSIEDIYARIDQVKPTYAKK-LLAAKE 236 Query: 239 TARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 LSR LV + TDVP +T + + + + K FT L+ R+ A Sbjct: 237 QTILSRHLVTIVTDVPGVTFDPDQMKWRGPDHAAVERIFKEFAFTSLLKRIGK-----PA 291 Query: 298 NIEPVV--LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 P V D+ + T S + + + S P Sbjct: 292 ESTPQVGLFDLGGS-----------------STPASSPATIEVTGPVSAAAP-------- 326 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 L Y ++T++ + + Q ++L I +F TD +DA + + +++ + Sbjct: 327 --LENYKTVGATFTEVQGYEAVSQLAKQLAGISVVAFDTETDGLDALCAGIVGMSLCADE 384 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 Q + FI L + ILS LK ++E LK+ HN K+D V Sbjct: 385 Q--------QAYFIPLPESAEE--------AAHILSPLKDLMQDERVLKVAHNAKFDLEV 428 Query: 476 LHRYGI-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRKSSIPIDK 532 L RYG+ D ML Y++D+ + H + +A L Y R + L ++S Sbjct: 429 LTRYGLPEAHPLYDTMLAHYLIDADQG-HSLDELAGGLLRYDTIRYKDLAPQESFALRTD 487 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 + + ++A E++ V L+L+ L +L ++LL ++ P++ V+ ME GI + Sbjct: 488 VDPKLLCDYASEDAYVTLRLYHALHKQLSPTEQRLL---TEVEIPLLYVLMHMEQRGIVL 544 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL--SSPKQLGDILFTKLK-FPSGAKTKT 647 D + L++ E+ +++L LE+ I S NL +SPKQ+G++LF +LK KTKT Sbjct: 545 DIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELKIMEKPRKTKT 604 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G + T + L + +P++ IL++R+ K+ +TY D LP + ++HT Y+ A Sbjct: 605 GNYVTNEETLLPLRS-LHPVVALILDYREARKLLNTYIDPLPK-MCYPDGKLHTSYNQAV 662 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP--------------------TKKLIS 747 T TGRL+S PNLQNIPI++DLG+ +RRAF++ P L+S Sbjct: 663 TATGRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACTPVDHTHEEPIGAVLLS 722 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQ+ELR++AH+++ + F + DIH AA++F V E+V+P MR AKT NF Sbjct: 723 ADYSQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFG 782 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 I YGI+P+ L+ +L IP EAA+ IK YF F I ++ + + GY ET FGRR Sbjct: 783 INYGITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNEAIALATERGYTETAFGRRR 842 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + + + + R ER AINAPIQG+AADI + AMI V + L +L + ++LQ+HDE Sbjct: 843 QLRNLRTARGAQRGNEERNAINAPIQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDE 902 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LV V +E+ + ++ +ME A P+ + VPL V I +W Sbjct: 903 LVLNVYLDELDRVTALVREAMEGAW-PECS--VPLVVEIGTGKDW 944 >gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829] gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829] gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829] Length = 1030 Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust. Identities = 312/1002 (31%), Positives = 512/1002 (51%), Gaps = 81/1002 (8%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++DG+S ++RAF+A DG NA+ GF NML KL+++ + I FD Sbjct: 72 VIDGNSLMHRAFHAIMQPMSAPDGRSTNALLGFFNMLIKLVRSFSPDGII----CAFDKG 127 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 R ++ P YKA RP + L Q P+V+ +A IP +E+QG+E DDI+ T + Sbjct: 128 KPQVRIDMLPQYKAQRPPMDPSLHEQFPMVKELLRALQIPVVELQGWEGDDILGTLAHQG 187 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHVIKKWGIPPEK 178 E +G+++ + + D+D+ QL + + T K E+ D+ H GI P Sbjct: 188 ELQGYSMLLFTGDRDIYQLATEHVSVVSTKKGVSDVRIMTPEDVDDLYH-----GITPNL 242 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + L GD+ DNIPG+PGIG K AA L+ EYG+LE ++ +A ++ K EN+ + + Sbjct: 243 VPDFYGLKGDTSDNIPGVPGIGPKRAAALIVEYGSLEGVIAHADQVS-GKMGENLRNHID 301 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY-DCDAA 297 ARLS+++ +R D PIT+ L + + AL FT L+ ++ + A Sbjct: 302 DARLSKRVATIRRDAPITVDLCAAAFPTFDPAEVARAFCALGFTNLVPKLLRFLPSLNGA 361 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +I+ ++ D T + A+ + TT+ SL+ +++ TP ++R Q Sbjct: 362 DIKGIIHDAATAAKRNSAVLPASAQHTTMSAD---SLTSSVQAHSTQATPLDSLVDRAQ- 417 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIG---SASFKIITDTM-DAFHSKPIAIAIST 413 V+ + +Q ++ T SA F T AF + ++ I Sbjct: 418 -------------TVHASEEEQTQSEVNTYAPDYSALFPACVQTQAHAFIKRVVSCGIWV 464 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDS-----TGKNTLTK----EILSYLKKFFENEHFLK 464 + S K + S T D+ T TL + ++ S LK ++ H + Sbjct: 465 ACAYEPASMKSAQENVQPSFDTLLDTHTLWVTDGTTLAQFSGTDVSSVLKTLVKSGHVIA 524 Query: 465 IGHN---------IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY 515 + + + L IS D+ L +Y+L+S + + ++ +L Sbjct: 525 LNCKALLHVLYPPVSSEPASLELSDISTAALFDVGLAAYLLNSDANDYSWQTLCSAYL-- 582 Query: 516 TRKEILKSRKSSIPIDKISDS-QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574 + + D D+ + E+A+E + + L+ +LR L + ++ L+ Sbjct: 583 ---------PTFVYPDTTDDTDEPNEYALE-AIAVRALYPVLRELLHTDGSDDLFYELEL 632 Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P+I V+ ME GI D+ LL + S +S L ++ + L+ + FN+ SP QL +LF Sbjct: 633 PLIPVLLHMERNGIYCDKHLLAEQSRALSHELNAMSLELRRLAQQDFNIDSPMQLSHVLF 692 Query: 635 TKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 P+ KT+ G + T AQ L ++ D + + IL++R+ KIK+TY D+L + I Sbjct: 693 DVWGLPTKGLKKTRRGYYSTNAQTLASLSMADERV-QLILDYRERMKIKNTYLDALVHDI 751 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752 + R+H+ ++ TGRL+S +PNLQNIP ++ LG ++R+AF+ P ++ DYSQ Sbjct: 752 -RSDGRIHSTFNQTIAATGRLSSSDPNLQNIPTRSSLGHRVRKAFVLPRNHLFLACDYSQ 810 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELR+LAH+++ L F+ D H AA IF V+ ++V+P +R AK +NF I+YG Sbjct: 811 IELRLLAHLSQDEHLIHAFQTGADFHAATAARIFHVSPDEVTPALRSRAKAVNFGIVYGQ 870 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 F LAT L+I R EA + I RYF +PG+ ++++++ F R++ YV T++GR+ H +I Sbjct: 871 QAFGLATSLKISRKEAQEMIDRYFEAYPGVRKFLDESVQFAREHSYVPTMYGRKRHIAQI 930 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 +S +R+ ER A+N P+QGSAADI + AMI V K LA+K++LQIHDEL FEV Sbjct: 931 DSRNFQLRSFAERTAMNHPMQGSAADIIKLAMIEVEKQFAQLGLASKLILQIHDELDFEV 990 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EE+ S ++ +ME + LRVPL I ++NW + Sbjct: 991 VPEELERVSSVVKRAMEGV----VTLRVPLIAEISYADNWAD 1028 >gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021] gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021] Length = 743 Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust. Identities = 288/796 (36%), Positives = 445/796 (55%), Gaps = 67/796 (8%) Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETARLSR 244 DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L A LS Sbjct: 1 DNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKSNADLSY 60 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 L ++TDV + + + L+L + +LI + EF + +N V D Sbjct: 61 TLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-------- 112 Query: 305 DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPIN 364 TTE +K +Q+ + S S + E TP+ I+ Sbjct: 113 --QTTEQP-------------VKMNQYKATSQDQSAV--ENTPK------------IQID 143 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 Y ++ D+ +W++KL + + TD++D + + I+ + L+ + + Sbjct: 144 RTKYETLLTQADLTRWIEKLNSAKLIAVDTETDSLDYMSANLVGISFA-LENGEAAYLPL 202 Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 + ++D + T + ST L+ +K EN + KIG NIK+D+ + R+GI ++ Sbjct: 203 QLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFARHGIELQ 253 Query: 485 GFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 G E D ML+SY L+S GR H++ +A+++L + + + KS + ++I Q Sbjct: 254 GVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIPLEQAT 311 Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ ID D L Sbjct: 312 EYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQ 371 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S EI+ L +LE+ Y L+G+ FNL+S KQL +ILF KL P KT G T + LE Sbjct: 372 SNEIATRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEVLE 431 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 +++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T TGRL+S +P Sbjct: 432 ELSY-SHELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDP 490 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH++ L F DIH Sbjct: 491 NLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIH 550 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R +A Y+ YF R Sbjct: 551 RSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYMDLYFQR 610 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +P + +++ + + GYVET+FGRR++ +INS + R ER AINAP+QG+AAD Sbjct: 611 YPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAAD 670 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I +RAMI + + + H +M++Q+HDELVFEV E++ + I ME A L Sbjct: 671 IIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA----EL 725 Query: 959 RVPLKVNIKVSNNWQE 974 VPL V + V NW E Sbjct: 726 VVPLIVEVGVGKNWDE 741 >gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] Length = 931 Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust. Identities = 329/982 (33%), Positives = 510/982 (51%), Gaps = 77/982 (7%) Query: 7 LFLVDGSSFIYRA---FYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 ++D +YR F PL++ K G V++I GF + L+ A + A+ Sbjct: 11 FLIIDAFGILYRYHFIFLKRPLINSK--GQNVSSINGFLRTYFSLINTYP----ADYTAI 64 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 D TFR+EIY YK NR +P+ L Q+P++ A GI I + +EADDI+ Sbjct: 65 ALDSSRKTFRSEIYKAYKENRESMPDDLRSQIPILYNLIDALGITRIVLDNYEADDIVGC 124 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIPPEKMV 180 +KE I S DKD++QLV T + + K+ ++ DI V +K G+ P +++ Sbjct: 125 IAQNNKKENIKTIIYSPDKDILQLVDENTKVIASNKDNELIEYDINMVKEKRGVYPNQII 184 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L +L GD+ DNIPG+ GIG KTA LL+EY L+NI N IK K +E ++ + A Sbjct: 185 DLLSLMGDASDNIPGVKGIGEKTALKLLEEYDTLDNIYKNIDSIKGK-IQEKLIADKDNA 243 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +S +L ++ ++ E+ N I + K +E K+ NI+ Sbjct: 244 YMSYELATIKREI-----------EELN----IDY-KEIEKNKI-------------NID 274 Query: 301 PVVLDINTTENKGI--AIETEIDRDTTIKTSQFSSLSDQTSK-INSEQTPQKLFLERLQK 357 V ++ E K I I + I ++ K + +S QT + N E +K + Sbjct: 275 EVNKILDNLELKQIRDKINSYIYGSSSKKKEEKVQISKQTKQETNVEDNTEKTIV----- 329 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +S NN Y I N ++Q + + T +D + I I+ + + Sbjct: 330 VSNAKDNNAKYYLIENETELQNLLNDINAKKLVCIDFETTGLDTLTDEIIGISFAIKSK- 388 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E ++DLS T+ D K K + L K E IGHN+KY+ ++ Sbjct: 389 -------EAFYLDLSGRTNID---KEACKKLVFDTLAK----EDIKIIGHNLKYEYKMMR 434 Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 M + D M+ +Y+++ R +++ +A +LSY +I + K ++ ++ Sbjct: 435 AIDKKMGNMYFDTMVAAYLINPSRGRYNMDDLALSYLSYNTIKYSDITDNAKKTLLDVEL 494 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 D V E+A E++++ + + P L L ++ ++ P+I V++ ME G+ I + Sbjct: 495 KD--VVEYACEDADITFRFYEYFAPLLNTYNLEDLFFNVEMPLISVLADMEFDGVYISTE 552 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 +K +S E + L + IY+ +GE+FNL SPKQL ILF KLK S KTKTG + T Sbjct: 553 KMKSLSEEYASLLEKTKAKIYEKAGEEFNLQSPKQLEYILFEKLKINSTKKTKTGAYSTD 612 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + L ++ I + +L +R+ SK+K+TY D P ++K+T R+H ++ T TGRL Sbjct: 613 EEVLREL-AQREKIAEYMLTYRKYSKLKNTYLDVFPTLVHKKTNRIHASFNQTVTATGRL 671 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S EPNLQNIP + D G+ IR FI+ LI+ADYSQIELR+LAH + L + F+N Sbjct: 672 SSSEPNLQNIPARGDEGKDIRNTFIAEKGNVLIAADYSQIELRLLAHFSNDPVLVEAFKN 731 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 + DIHR A +I+ V+ E V+P MR AK INFSIIYG + F L+ +L I R EA D+IK Sbjct: 732 NDDIHRKTAMKIYSVSKEHVTPSMRNTAKIINFSIIYGKTAFGLSKELNISRKEADDFIK 791 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR-RIHYDEINSPKSSIRNINERAAINAPI 892 YF + + + EK V+ GYV T+ GR R INS + +RN ER A+N I Sbjct: 792 GYFSTYSQVKPFCEKVIEDVKAKGYVRTMLGRIRDLSKTINSSNAVVRNEAERMALNTLI 851 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAAD+ + AMI++HK ++H K+++Q+HDELV EV E+E A I+ ME + Sbjct: 852 QGSAADMIKVAMIAIHKEFKNHFKTAKIVMQVHDELVVEVSEKESDKAMTIMKEIMEHS- 910 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VP+ V+I +W + Sbjct: 911 ---VKTNVPITVDIHKGLSWGD 929 >gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017] gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017] Length = 957 Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust. Identities = 333/1017 (32%), Positives = 518/1017 (50%), Gaps = 113/1017 (11%) Query: 9 LVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 +VDG S +RA+YA R G+P + GF L LL+ + + A+ Sbjct: 1 MVDGHSLAFRAYYAFAKGREGGLRTSTGIPTSVCYGFLKNLLDLLKTEKPH----YLAIA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR++ YKANR + PE +P L ++ A +P + G+EADD++ T Sbjct: 57 FDLGGPTFRHKADETYKANRAETPEDFIPDLENLQELLTAMDLPIVVEPGYEADDVLGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--------TTCLYDTVKEE-----KIDIEHVIKK 171 Y A ++GF V I+S D+DL QLV P + +Y V +K Sbjct: 117 AYQASQQGFKVKILSGDRDLFQLVQPDDRVRILYMSNIYSAASRSGAPPGSFGPTEVQEK 176 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 G+ E++V +AL GDS DNIPG+ GIG KTA LL EYG L+NI + +IK +++ Sbjct: 177 MGVTVEQIVDYKALCGDSSDNIPGVKGIGDKTAVKLLTEYGTLDNIYASVDQIKGAVQKK 236 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL---INRV 288 ++ E A S+ + + DVP+ + + L+ ++ L+ LEF IN++ Sbjct: 237 -LITGKEAAYHSQFMARIVLDVPLKVGPKDFELKGFTSDKVSPVLEKLEFQSFLRQINQL 295 Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDT-TIKTSQFSSLSDQTSKINSEQTP 347 + +A I P + + G DT ++T L + TP Sbjct: 296 QKQFGGEA--IAPPAPTASPVTDDGDDTWFFSAEDTEAVQTPPPPQLVPRIV-----DTP 348 Query: 348 QKL-----FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402 KL LE +Q P+ D+ T ++ +D L IG + Sbjct: 349 AKLKELITILESCTDGNQ-PVAWDTETDSLSPRDAH-----LVGIGC-----------CW 391 Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462 + AIA + K+ + +ET L + E++ + Sbjct: 392 QGEEQAIAYIPVGHKEGDNLDLETALEGL----------------------RPILESDVY 429 Query: 463 LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521 K+ N K+D+LV GI ++G D ML +YVL+ R SH++ +++ +L T K Sbjct: 430 PKVLQNAKFDRLVFQFQGIQLQGVVFDTMLANYVLNPER-SHNLTDLSRNYLQITAKSYK 488 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVV 580 + K I +S +QV E+ + QL L +L LH +++ ++ P+ V+ Sbjct: 489 ELVKKGQTIADLSITQVAEYCGLDVFTTYQLREKLEAELAAIPSLHGLFQEVELPLEAVL 548 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF- 639 + ME +G++IDQ+ L+ +S ++ +L LE Y+L+GE FNL SPKQL +ILF +L+ Sbjct: 549 AVMETSGVRIDQEYLQTLSTQLEADLQRLEAGAYELAGEIFNLGSPKQLSEILFGRLELD 608 Query: 640 -PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 KTK G + T A LE++ GD+PII +LE+R L+K+KSTY D+LP + T R Sbjct: 609 VKKSRKTKLG-YSTDAATLEKLQ-GDHPIIDVLLEYRTLAKLKSTYVDALPMLVRDDTHR 666 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 +HT ++ A T TGRL+S PNLQNIPI+T+ ++IR AFI + L++ADYSQIELRIL Sbjct: 667 IHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRAAFIPESSWILMAADYSQIELRIL 726 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH+++ L + + N D+H + A + + ++++ + RR AK INF +IYG+ P R A Sbjct: 727 AHLSQEPRLLEAYRNGQDVHTLTAQLL--LEKDQIAAEERRLAKIINFGVIYGMGPHRFA 784 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR--IHYDEINSPK 876 + + SEA D+I+R++ R+P + Y+++ + GYVETI GRR +D K Sbjct: 785 REAGVKYSEAKDFIQRFYDRYPEVFAYLQRMEREAVSQGYVETILGRRRYFEFDSRGLKK 844 Query: 877 SSIRNINE-------------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917 + + E RAA NAPIQGS+AD+ + AM+ + +LE +K Sbjct: 845 YRGKALEELAEVDLSDIKMSSYDRGLLRAAANAPIQGSSADLIKIAMVQLQAALEPYK-- 902 Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++L+Q+HDELV EVP +E+ I +ME A LP L +PL + NW E Sbjct: 903 SRLLMQVHDELVLEVPVDEVDDVRSQIKTTMETA-LP---LSIPLVAEVHTGANWME 955 >gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] Length = 948 Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust. Identities = 323/1005 (32%), Positives = 514/1005 (51%), Gaps = 103/1005 (10%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L+L+D + IYRA+YA PL+ + G +A+ GF + L ++ R + IA V Sbjct: 4 LYLLDAYALIYRAYYAFINRPLVDAQ--GRDTSALYGFASTLQDIIDKERPDYIA----V 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 D P TFR++ YP+YKANRP+ PE + +P ++ QA+ IP + ++G+EADD+I T Sbjct: 58 AMDMPGGTFRHKEYPEYKANRPETPETIRFSMPYIKELVQAYQIPLLGVEGYEADDLIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178 + A + G+ V +++ DKD QLV P ++ + E + E + K+GI P + Sbjct: 118 LSRQAVEAGYEVRMVTPDKDYGQLVGPHAQMFAPQRTGSGFELLGAEEITAKYGIRYPLQ 177 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 M+ L GDS DN+PG PGIG A LL+E+ +E+I ++K ++ +L E Sbjct: 178 MIDYLGLVGDSSDNVPGCPGIGKVAAQRLLEEFDTIEDIYARIDQVKPTYAKK-LLAAKE 236 Query: 239 TARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 LSR LV + TDVP +T + + + + K FT L+ R+ A Sbjct: 237 QTMLSRHLVTIVTDVPGVTFDPDQMKWRGPDHAAVERIFKEFAFTSLLKRIGK-----PA 291 Query: 298 NIEPVV--LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 P V D+ + T S + + + S P Sbjct: 292 ESTPQVGLFDLGGS-----------------STPASSPATIEVTGPVSAAAP-------- 326 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + Y ++T++ + + Q ++L +F TD +DA + + +++ + Sbjct: 327 --MENYKTVGVTFTEVQGYEAVSQLAKQLAGSSVVAFDTETDGLDALCAGIVGMSLCADE 384 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 Q + FI L + ILS LK ++E LK+ HN K+D V Sbjct: 385 Q--------QAYFIPLPESAEE--------AAHILSPLKDLMQDERVLKVAHNAKFDLEV 428 Query: 476 LHRYGI-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRKSSIPIDK 532 L RYG+ D ML Y++D+ + H + +A L Y R + L ++S Sbjct: 429 LTRYGLPEAHPLYDTMLAHYLIDADQG-HSLDELAGGLLRYDTIRYKDLAPQESFALRTD 487 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 + + ++A E++ V L+L+ L +L ++LL ++ P++ V+ ME GI + Sbjct: 488 VDPKLLCDYASEDAYVTLRLYHALHKQLSPTEQRLL---TEVEIPLLYVLMHMEQRGIVL 544 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL--SSPKQLGDILFTKLK-FPSGAKTKT 647 D + L++ E+ +++L LE+ I S NL +SPKQ+G++LF +LK KTKT Sbjct: 545 DIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELKIMEKPRKTKT 604 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G + T + L + +P++ IL++R+ K+ +TY D LP + ++HT Y+ A Sbjct: 605 GNYVTNEETLLPLRS-LHPVVALILDYREARKLLNTYIDPLPK-MCYPDGKLHTSYNQAV 662 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP--------------------TKKLIS 747 T TGRL+S PNLQNIPI++DLG+ +RRAF++ P L+S Sbjct: 663 TATGRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACTPVDHTHEEPIGAVLLS 722 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQ+ELR++AH+++ + F + DIH AA++F V E+V+P MR AKT NF Sbjct: 723 ADYSQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTANFG 782 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 I YGI+P+ L+ +L IP EAA+ IK YF F I ++ K + GY ET FGRR Sbjct: 783 INYGITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNKAIALATERGYTETAFGRRR 842 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + + + + R ER AINAPIQG+AADI + AMI V + L +L + ++LQ+HDE Sbjct: 843 QLRNLRTARGAQRGNEERNAINAPIQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVHDE 902 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LV V +E+ + ++ +ME A P+ + +PL V I +W Sbjct: 903 LVLNVYLDELDRVTALVREAMEGAW-PECS--IPLVVEIGTGKDW 944 >gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3] gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3] Length = 948 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 328/1015 (32%), Positives = 522/1015 (51%), Gaps = 115/1015 (11%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L+L+D + IYRA+YA PL+ + G +A+ GF + L ++ R + IA V Sbjct: 4 LYLLDAYALIYRAYYAFINRPLVDAQ--GRDTSALYGFASTLQDIIDKERPDYIA----V 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 D P TFR++ YP+YKANRP+ PE + +P ++ QA+ IP + ++G+EADD+I T Sbjct: 58 AMDMPGGTFRHKEYPEYKANRPETPETIRFSMPYIKELVQAYQIPLLGVEGYEADDLIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PEK 178 + A + G+ V +++ DKD QLV P ++ + E + E + K+GI P + Sbjct: 118 LSRQAVEAGYEVRMVTPDKDYGQLVGPHAQMFAPQRTGSGFELLGAEEITAKYGIRYPLQ 177 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 M+ L GDS DN+PG PGIG A LL+E+ +E+I ++K ++ +L E Sbjct: 178 MIDYLGLVGDSSDNVPGCPGIGKVAAQRLLEEFDTIEDIYARIDQVKPTYAKK-LLAAKE 236 Query: 239 TARLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 LSR LV + TDVP +T + + + + K FT L+ R+ Sbjct: 237 QTMLSRHLVTIVTDVPGVTFDPDQMKWRGPDHAAVERIFKEFAFTSLLKRI--------- 287 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD--QTSKINSEQTPQKLFLERL 355 K A ++ +S SL + + S TP Sbjct: 288 -------------GKPAATAAQVGLFDLGGSSAAPSLPATIEVAGPVSATTP-------- 326 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 L Y ++T++ + + Q ++L +F TD +DA + + +++ D Sbjct: 327 --LENYKTVGVTFTEVQGYEAVSQLAKQLAGSSVVAFDTETDGLDALCAGIVGMSLCA-D 383 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 +K + FI L +++++T ILS LK+ ++E LK+ HN K+D V Sbjct: 384 EK-------QAYFIPLP-ESAEEAT-------HILSPLKELMQDERVLKVAHNAKFDLEV 428 Query: 476 LHRYGI-SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--------TRKEILKSRKS 526 L RYG+ R D ML Y++D+ + H + +A L Y + EI R Sbjct: 429 LTRYGLPEARPLYDTMLAHYLIDADQG-HSLDELAGGLLRYDTIRYKDLSPLEIFALRTD 487 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQME 584 P + ++A E++ V L+L+ L +L ++LL ++ P++ V+ ME Sbjct: 488 VDP------KLLCDYASEDAYVTLRLYQALHKQLSPTEQRLL---TEVEIPLLYVLMHME 538 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL--SSPKQLGDILFTKLK-FPS 641 GI +D + L++ E+ +++L LE+ I S NL +SPKQ+G++LF +L+ Sbjct: 539 QRGIVLDIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELQIMEK 598 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG + T + L + +P++ IL++R+ K+ +TY D LP + ++HT Sbjct: 599 PRKTKTGSYVTNEETLLPLRS-LHPVVALILDYREARKLLNTYIDPLPK-MCYPDGKLHT 656 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP-------------------- 741 Y+ A T TGRL+S PNLQNIPI++DLG+ +RRAF++ P Sbjct: 657 SYNQAVTATGRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACAPVDHTHEKPI 716 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 L+SADYSQ+ELR++AH+++ + F + DIH AA++F V E+V+P MR A Sbjct: 717 GAVLLSADYSQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKA 776 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 KT NF I YGI+P+ L+ +L IP EAA+ IK YF F I ++ + + GY ET Sbjct: 777 KTANFGINYGITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNEAIALATERGYTET 836 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 FGRR + + + + R ER AINAPIQG+AADI + AMI V + L +L + ++ Sbjct: 837 AFGRRRQLRNLRTARGAQRGNAERNAINAPIQGTAADIIKIAMIRVEEELTKQQLRSYLV 896 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 LQ+HDELV V +E+ + ++ +ME A P+ + VPL V I +W E + Sbjct: 897 LQVHDELVLNVYLDELERVTALVREAMECAW-PECS--VPLVVEIGTGKDWLEAH 948 >gi|229828896|ref|ZP_04454965.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM 14600] gi|229792059|gb|EEP28173.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM 14600] Length = 910 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 318/993 (32%), Positives = 506/993 (50%), Gaps = 108/993 (10%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M +++ L L+DG S + RAFY P L+ G NA+ GF N+L+K ++ + + H Sbjct: 1 MAEQSKLLLIDGHSILNRAFYGLPDLTNSK-GQHTNAVYGFLNILFKTMEEEKPD----H 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD A TFR+ ++ DYK R + L Q+P+++ A GI + +G EADD+ Sbjct: 56 LTVAFDLSAPTFRHRMFADYKGTRKPMAAELREQVPMIKEMLAAMGICLVTKEGLEADDL 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWG 173 + T + I E G VTI+S D+DL+QL + P T T + E + V + + Sbjct: 116 LGTMSKIGEAAGMDVTILSGDRDLLQLATDKVKIMIPKTKKGGT-ETESYYAKDVRETYQ 174 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 + P + + ++AL GD+ DNIPG+PGIG KTA ++ YG++E +A +K + NI Sbjct: 175 VSPTEFIDVKALWGDTADNIPGVPGIGEKTAINIIAAYGSIEAAHEHAEDLKPPRAARNI 234 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 +++ + ARLS+ L + I L + + FT R+ Sbjct: 235 VDFWDQARLSKTLATIDVHAKIDYDLAAAQIGNI-------------FTDDAYRL----- 276 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 C + ++L + + +DR+ TS+FS L+ +T+ F E Sbjct: 277 CKDWGFKNILLRFD---------KESVDREEKDLTSRFSHLTSRTA-----------FEE 316 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 +++ Q + W IG+ F + D A + A+AIS Sbjct: 317 MIERAGQSQ---------------ETW------IGAGLF--LKDHSAARAGQIRALAISF 353 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTG---KNTLTKEILSYLKKFFENEHFLKIGHNIK 470 + E + L + D +G ++T + L L +N FL + Sbjct: 354 EGKAFFAEADTEARQLSLFGSEADDGSGDLIQSTDLRRGLQALADAGKNLAFLDL----- 408 Query: 471 YDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKS 526 K L + S RG D+ + +Y+LD SS+ IA+ L+ + E +K+ Sbjct: 409 --KEALSQLSFSDRGRSFDLQVAAYLLDPLSSSYPTEDIARDQLALSIPSYSEFFGKKKA 466 Query: 527 SIPIDKI-SDSQVQEHAIENSNVILQLWLLLR-PKLIVEKLLH-----VYERLDKPMIDV 579 D+I D + EH + + Q ++ R P+ ++++L +YE ++ P++ Sbjct: 467 ----DQIWEDPEEVEHRMHYA--CYQAYVASRAPQKLLKRLEEQGMRALYEEVELPLVYT 520 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 + ME GI ++++ LK ++ + LEE IY +GE FN++SPKQLG++LF +L Sbjct: 521 LYDMETAGIAVEKEALKSYGDQLVGRINELEEGIYREAGETFNINSPKQLGEVLFGQLGL 580 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 P KTKTG + T A L+ + + I++++LE+RQL+K+KSTYAD L I R+ Sbjct: 581 PGARKTKTG-YSTAADVLDPLAV-NYQIVRDVLEFRQLTKLKSTYADGLAKVIAD-DGRI 637 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 H+ + T TGRL+S EPNLQNIPI+ +LG++IRR F + + +DYSQIELR+LA Sbjct: 638 HSSFQQTVTATGRLSSTEPNLQNIPIRMELGKEIRRVFPAMEGCVFVDSDYSQIELRVLA 697 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+++ L + + DIHR A+ +F E+V+ Q R +AK +NF I+YGIS F LA Sbjct: 698 HLSQDPKLIEAYRQGKDIHRATASLVFHTPFEEVTDQQRSNAKAVNFGIVYGISAFGLAK 757 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA +YI YF +P +H+Y++ F R+ GY T+FGRR E+ + Sbjct: 758 DLGISREEAQEYIDGYFAAYPRLHDYLDGLVEFARKEGYAVTLFGRRRPVPELKNSNFMQ 817 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER A+NAP+QG+AADI + AM+ VH L L ++++L +HDEL+ E E+E Sbjct: 818 RQFGERVAMNAPVQGTAADIIKIAMVRVHDRLAKEGLRSRLILTVHDELLVETFEQEEQE 877 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ M A L V L+++ NW Sbjct: 878 VREILDQEMRGAA----QLSVELEIDTHSGRNW 906 >gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822] gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822] Length = 966 Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust. Identities = 336/1017 (33%), Positives = 529/1017 (52%), Gaps = 110/1017 (10%) Query: 7 LFLVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L+DG S YRA++A PL R G+P + GF N L ++++ + + + Sbjct: 9 FLLIDGHSLAYRAYHAFAHAKAGPL--RTSTGIPTSVCFGFLNSLLQVIETQQPQGVV-- 64 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 + FD +FR+ +YP+YK +R + PE +P L ++ A + + + G+EADDI Sbjct: 65 --IAFDRKEPSFRHLLYPNYKGDRKETPEEFIPDLENLKRLLNALNLQMVTVAGYEADDI 122 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKE------EKIDIEHV 168 + T A + V I++ D+DL QLV P + LY + +K ++D + V Sbjct: 123 LGTLAEKAASSNYRVKIVTGDRDLFQLVDPEKQISVLYVEKNALKGIAAHGYTEVDPKVV 182 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 +K G+ P ++V +AL GD D+IPGI GIG KTAA LL+EYG+LE I N +IK Sbjct: 183 EEKLGVKPNQVVDFKALCGDKSDSIPGILGIGEKTAATLLKEYGSLEGIYQNLDQIKGAV 242 Query: 229 RRENILEYA-ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 +++ LE E A+ SR L L DVP I LE L+ + + L+ LE K + Sbjct: 243 KKK--LEAGKEDAQQSRVLAQLALDVPTDIDLEKCQLKGFDINTIRPLLEKLELKKFLQN 300 Query: 288 VATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP 347 + + + P DIN + + T + + IK + + + S I P Sbjct: 301 INRLQEKFGGTVHPTT-DINEPQQLSL-FATPVSEN--IKEVEKTEPVAEVSSIE----P 352 Query: 348 QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPI 407 Q ++ +KL+ K++N + Q +T ++ T ++D + + Sbjct: 353 Q--IIDTSEKLA----------KLINILE-----QHTDTHQPVTWDTETTSLDPIEATLV 395 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 I Q D + +I L+ HT G+ E+L+ L+ E++ + K Sbjct: 396 GIGCCWGHQSTDVA------YIPLN-HTE----GEQLPQTEVLAALRSILESDQYPKAFQ 444 Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526 N K+D++VL GI + G D ML SYVL SH ++ + ++L + L + Sbjct: 445 NTKFDRIVLLHQGIQLAGVVFDTMLASYVLRP-EDSHKLSDLCHRYLENIKS--LNYKDL 501 Query: 527 SIP----IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-----KLLHVYERLDKPMI 577 IP I + S+V + ++ +L PKL+ E L ++ ++++P+ Sbjct: 502 EIPKTQTIANLDISRVAHYCGMDAYATFKLV----PKLLAELEKAPDLYNLLIKVEQPLE 557 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 V+++ME TG++ID LK S ++ ++L E+ Y+ +GE FNL SPKQL ILF KL Sbjct: 558 PVLAEMENTGVRIDSQYLKAFSQKLEQDLAIFEKKAYEAAGESFNLGSPKQLSYILFDKL 617 Query: 638 KFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 K K KTG + T LE++ G++ II ILE R L+K+KSTY D+LP ++ + Sbjct: 618 KLSKSKSRKIKTG-YSTDHATLEKLQ-GEDRIIDYILEHRTLAKLKSTYVDALPALVHPK 675 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T RVHT ++ T TGRL+S PNLQNIPIKT+ ++IR+AFI L+SADYSQIEL Sbjct: 676 TGRVHTDFNQTVTTTGRLSSSNPNLQNIPIKTEFSRQIRQAFIPEEGWLLVSADYSQIEL 735 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RILAH+ + L + ++N D+HR+ A +F + ++ + R KTINF +IYG+ Sbjct: 736 RILAHLTQEPLLVEAYQNYQDVHRVTAQLLF--DKANITSEERSIGKTINFGVIYGMGAQ 793 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 R A + E ++I++Y ++ + EY+E+ K G+V TI GRR +++ + Sbjct: 794 RFARAFGLSVQEGKEFIEKYHQKYARVFEYLERVKKEAIAKGFVTTILGRRRYFEFFDDK 853 Query: 876 KSSIR--------------NINE----RAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917 + +R N ++ RAA NAPIQGS+ADI + AM+ + + L+ ++ Sbjct: 854 LNRLRGEKPENLDLKKLELNFSDAQLLRAAANAPIQGSSADIIKIAMVQLQEILQQYQ-- 911 Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++LLQ+HDELVFEVP E I ++ME A +NL VPL V I+ NW E Sbjct: 912 ARLLLQVHDELVFEVPPHEWEELEVKIKNTMENA----VNLTVPLVVEIRSGKNWME 964 >gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] Length = 920 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 319/980 (32%), Positives = 499/980 (50%), Gaps = 78/980 (7%) Query: 7 LFLVDGSSFIYR---AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 ++D +YR F PLL+ K G V++I GF + L+ A + A+ Sbjct: 5 FLIIDAFGILYRYHFIFLKRPLLNSK--GQNVSSINGFMRTYFSLINTYP----AEYVAI 58 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 D TFRNEIY +YK NR +P+ L Q+P++ A GI I + +EADDI+ T Sbjct: 59 ALDSSRKTFRNEIYKEYKENRESMPDDLRSQIPILYNLIDALGISRIVLDNYEADDIVGT 118 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIPPEKMV 180 +KE I S DKD++QLV + + K+ ++ D + V +K G+ P +++ Sbjct: 119 IAERNKKENIKTIIYSPDKDILQLVDDDVKVVASNKDNELMEYDAQAVKEKRGVYPNQII 178 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L +L GD+ DNIPG+ G+G KTA LL+EY +L+ I N IK K +E +LE + A Sbjct: 179 DLLSLMGDASDNIPGVKGVGEKTALKLLEEYKSLDGIYENIDSIKG-KIQEKLLESKDMA 237 Query: 241 RLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 +S KL + ++ + + N + L LE ++ ++ I Sbjct: 238 YMSYKLATIERNIEGFNLDYNEIASSKINIDEVNKILDELELKQIRDK-----------I 286 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 + + E+K +I++D KT + LS + Sbjct: 287 NSYIYGSSKKEDKVKISNDKINKDNDSKTEEAPILSAKD--------------------- 325 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 N SY I N +++ ++ + + T +D F I I+ + Sbjct: 326 ----NKSSYYLIENETELENLLKDINSKKLVCIDFETTGLDTFKDTIIGISFAIKSN--- 378 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 E ++DLS T D L + L E E IGHN+KY+ ++ Sbjct: 379 -----EAFYLDLSGRTKIDKDKCMNLVFDTL-------EKEDIKVIGHNLKYEYKMMRAI 426 Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535 G S+ + D M+ +Y+++ R +++ +A +LSY ++ + K ++ + D Sbjct: 427 GKSIGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYADLTDNAKKTLLDAPLKD 486 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 V E+A E+++V + + P L L ++ ++ P++ V++ ME G+ I + + Sbjct: 487 --VVEYACEDADVTFRFYECFAPLLKTHNLEDLFFNIEMPLVSVLADMEFDGVYISSERM 544 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 K +S E S L +E IY +GE+FNL SPKQL ILF K+ P KTKTG + T + Sbjct: 545 KALSDEYSSLLEKTKEKIYKEAGEEFNLQSPKQLEYILFDKMGIPPTKKTKTG-FSTDEE 603 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 L ++ I + +L +R+ +K+K+TY D P IN++T R+H ++ T TGRL+S Sbjct: 604 VLTEL-SQKYKIAEYMLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGRLSS 662 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 EPNLQNIP++ + G++IR FI LI+ADYSQIELR+LAH + L + F+N+ Sbjct: 663 SEPNLQNIPVRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPTLVEAFKNND 722 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR A +I+ V+ E V+ MR AK INFSIIYG + F L+ +L I R EA D+IK Y Sbjct: 723 DIHRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKRKEAEDFIKGY 782 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGR-RIHYDEINSPKSSIRNINERAAINAPIQG 894 F + + + E+ VR G+V T+ GR R INS + RN ER A+N IQG Sbjct: 783 FSTYSRVKPFCEEVVEEVRNKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLIQG 842 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 SAAD+ + AM+++HK ++H K+++Q+HDELV EV E E A I+ ME + Sbjct: 843 SAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAMTIMKEIMEHS--- 899 Query: 955 KINLRVPLKVNIKVSNNWQE 974 + VP+ V+I N+W E Sbjct: 900 -VKANVPIIVDIHKGNSWGE 918 >gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] Length = 903 Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust. Identities = 253/614 (41%), Positives = 379/614 (61%), Gaps = 22/614 (3%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + + + + WV +LE +F + T+ +D ++ + ++ + E Sbjct: 304 AYETVFSEESFENWVARLEKAELFAFDLETNNLDYIEAEIVGLSFAIQPH--------EA 355 Query: 427 IFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 ++I L +D+T L +E +L+ LK E+ K+G N+K+D VL YGI ++G Sbjct: 356 MYIPLG---HEDATAPPQLPREQVLARLKPLLEDPRHGKVGQNLKFDCNVLANYGIELQG 412 Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR--KEILKSRKS-SIPIDKISDSQVQEH 541 D ML SYVLDS + H++ S+A K+L T E++ + + +P ++++ + + Sbjct: 413 IRHDSMLESYVLDSTATRHNMDSLALKYLQRTTITYEMVAGKGAKQLPFNQVTIEKAAPY 472 Query: 542 AIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 A E++++ LQL P+L E+ L +Y+ L+ P+I V+S+ME G+Q++ + LK S Sbjct: 473 AAEDADISLQLHHCFWPRLQQEEGLRQLYQELEIPLIPVLSRMERNGVQVNTEQLKAQSD 532 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 E++ L LE+ ++L+GE FNL+SPKQ+ IL+ KLK P KT TGQ T L+++ Sbjct: 533 ELAARLKRLEQEAFELAGESFNLASPKQIQAILYEKLKLPVTRKTPTGQPSTAETVLQEL 592 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 D P+ + +LE+R LSK+KSTY D LP +N T RVHT Y A T TGRL+S +PNL Sbjct: 593 AL-DYPLPQLLLEYRTLSKLKSTYTDRLPLQVNSHTGRVHTSYHQAVTATGRLSSSDPNL 651 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIPI++ G++IR+AFI+PP +L++ADYSQIELRI+AH+++ L FE DIH+ Sbjct: 652 QNIPIRSTEGRRIRQAFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEEDIHQR 711 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A EIF +E V+P+ RR AK INF +IYG+S L QL I R+ A YI+RYF R+P Sbjct: 712 TATEIFRTPLEDVTPEQRRSAKAINFGLIYGMSAHGLGRQLGINRTAAQHYIERYFQRYP 771 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 G+ Y+E RQ GYVET+FGRR++ EI+S ++ RN ER AINAP+QGSAADI Sbjct: 772 GVKAYMENICQQARQKGYVETLFGRRLYLPEIHSRQTQRRNQAERTAINAPMQGSAADII 831 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 +RAMI + L++ K +M++Q+HDELVFEV E+++ + I +M A L+V Sbjct: 832 KRAMIHADRWLQEQKANARMIMQVHDELVFEVAEDKLEATIRAIRENMAAAA----QLKV 887 Query: 961 PLKVNIKVSNNWQE 974 PL V I NW E Sbjct: 888 PLIVEIGSGTNWDE 901 Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 111/275 (40%), Positives = 159/275 (57%), Gaps = 6/275 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS+++RAF+A P L+ G P AI G NML KLL + + IA V+FD Sbjct: 9 LILIDGSSYLFRAFHALPSLTTS-KGQPTGAIYGVINMLRKLLDEYQPQYIA----VVFD 63 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ YK +RP +PE L Q+ + +A G+P + ++G EADD+I T Sbjct: 64 AKGKTFRHELFEQYKDHRPPMPEELACQIQPLHDLIRALGLPLLCVKGVEADDVIGTLAR 123 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + I S DKDL QLV+P L +T+ K+D V K+ + PE++V AL Sbjct: 124 QATAQRLETLISSGDKDLAQLVNPHVSLVNTMNLSKLDPAGVKAKFNVSPEQIVDYLALV 183 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DNIPGIPGIG KTAA LL +Y +L+ I+ AS IK K E++ + L+++L Sbjct: 184 GDTVDNIPGIPGIGPKTAAKLLCQYHSLDQIMAYASEIK-GKMGESLRSHLTQLPLAKEL 242 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 +R D+ + + + L N P L ALEF Sbjct: 243 ATVRQDLLLDLGPKDLRCAPPNIPALRELYAALEF 277 >gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120] gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120] Length = 977 Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust. Identities = 335/1017 (32%), Positives = 526/1017 (51%), Gaps = 107/1017 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 LVDG S +R+++A R G+P + GF L +++ + +++A Sbjct: 17 FILVDGHSLAFRSYFAFAKGRDGGLRTKTGIPTSVCFGFLKSLLEVMATQQPQAMA---- 72 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR+E YKA+RP PE +P L + + F +P G+EADD++ Sbjct: 73 IAFDLGLPTFRHEADDTYKADRPGTPEDFVPDLKNLHELLEGFNLPIYTAPGYEADDVLG 132 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKEE-----KIDIEHVIKK 171 T A EG+ V I++ D+DL QLV P T L D +K ++ E V ++ Sbjct: 133 TLAQKATAEGYKVKILTGDRDLFQLVDPEKEITVLNFSPDALKRSTNSITEVSTEQVKER 192 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 G+ P ++V +AL GD DNIPG+ GIG KTA LL YG+L+ + + IK +++ Sbjct: 193 LGVLPTQVVDFKALCGDKSDNIPGVRGIGEKTAVQLLSTYGSLDGVYKALNEIKGATQKK 252 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 + E E A S+ L + DVP+ + LE L + LI L+ LEFT+ +++ Sbjct: 253 -LAEGKEDAAKSQFLAKIVVDVPLEVNLEDCKLVGFDESLLIPILEKLEFTRFLSQ---- 307 Query: 292 YDCDAANIEPVVLDINTTENK--GIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349 IN + + G +ET + I+T+ F D + +E+T Sbjct: 308 --------------INDLQLRFGGTVVETPKTETSAIETTNFED--DDIAFYTAEET--- 348 Query: 350 LFLERLQKLSQYPINNDSYTKIVNTK-DIQQWVQKLETIGSASFKIITDT----MDAFHS 404 Q + Q + +I+NT+ + + VQ L+ + + DT ++ + Sbjct: 349 ------QAIQQNQPASPIQPRIINTEAKLIELVQILQQFTNPETPVAWDTETSALEPRDA 402 Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464 + I + D +++ I L+ HT G+N +L+ L+ E+ + K Sbjct: 403 ALVGIGCCWGTETDASAY------IPLA-HTK----GENLNQDIVLAALRPILESADYPK 451 Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523 N K+D+LV GI++ G D ML SYVL+ +SH++ + Q++L T + + Sbjct: 452 TFQNAKFDRLVFLVQGINLTGVVFDPMLASYVLNPD-TSHNLTDLTQRYLGLTIQNYVDL 510 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI----VEKLLHVYERLDKPMIDV 579 I I+ S V + QL LR +L ++KLL +++P+ V Sbjct: 511 VPKGKTIADINISAVANYCCLQVYATFQLVAKLREELAKTPNLDKLLR---EVEQPLESV 567 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 ++ +E TG++I+ L ++S ++ +L L+E +L+GEKFNL SPKQL ILF KL Sbjct: 568 LATVEYTGVRINSAYLHELSQQLEIDLAKLQEQATELAGEKFNLGSPKQLSYILFEKLGL 627 Query: 640 PS--GAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 + K +TG + T A LE++ D + I+E+R LSK+KSTY D+LP + T Sbjct: 628 STKYSRKIQTG-YSTDAATLEKLQEVDDTGFVNAIIEYRTLSKLKSTYVDALPALVRPDT 686 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 QRVHT ++ +T TGRL+S PNLQNIPI+T ++IR+AF+ + +ADYSQIELR Sbjct: 687 QRVHTDFNQTATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLMAAADYSQIELR 746 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 ILAH+++ L Q ++ + DIH + A +F E V+ RR AKTINF +IYG+ + Sbjct: 747 ILAHLSQEPLLVQAYQQNEDIHTVTAKLVF--EKEDVNSDERRIAKTINFGVIYGMGSLK 804 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS-- 874 + I ++ A ++IKR+ R+ I Y+E K GYVETI GRR ++D N+ Sbjct: 805 FSRSTGIDKNVANEFIKRFNERYAKIFAYLEGVKKQAISLGYVETILGRRRYFDFTNNSL 864 Query: 875 -------PK----SSIRNINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917 P+ S ++N+ R+A NAPIQGS+ADI + AM+ +H+ L+ ++ Sbjct: 865 RKLKGSKPEDIDLSKLKNLGPYDAGLLRSAANAPIQGSSADIIKIAMVQIHEVLKKYQ-- 922 Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++LLQ+HDELVFEVP +E I ME A + L VPL V+++ NW E Sbjct: 923 ARLLLQVHDELVFEVPPQEWAELQPQIKSVMENA----VKLSVPLVVDVRAGENWME 975 >gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 906 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 319/979 (32%), Positives = 512/979 (52%), Gaps = 89/979 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DGS+F++RA+++T + DG P AI G + + +L +K+ + IF Sbjct: 5 LILMDGSAFLFRAYFSTLKQNLTNQDGFPTGAIFGVISAIKRL----QKQYPEAKIITIF 60 Query: 66 DYPAVTFRNEIYPDYKANR-PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D FR++IYP YKA+R P E+++ PL + +A G+ + + EADD+IAT Sbjct: 61 DAKGKNFRHDIYPQYKAHRKPADSELVVQIEPLYEI-IRAMGLHFMCVPDVEADDVIATL 119 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 + A + I S DKDLMQLVS D +K D + VI+K G+ PE + L A Sbjct: 120 SCYANQNNIKTIIASGDKDLMQLVSANISQLD-MKGTVYDRQGVIEKMGVAPEIFLDLLA 178 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAETAR 241 LTGDS DN+PG+P +G KTA LQ Y ++ I NA++IK K K R N Sbjct: 179 LTGDSADNVPGVPSVGPKTAIKWLQTYNDIAGIKENATQIKGKVGEKLRNNFY----LLD 234 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LSR+LVML+ D + +P CN S ++ L + + + P Sbjct: 235 LSRRLVMLKFD--VALP--------CNISDDESEQDVVKLADLYQQYGFSMWLKQLDNMP 284 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 ++ E +GI Q + +++ TS + ++ L+ SQ Sbjct: 285 ML------EQEGI---------------QATEVTESTSNM----------VDVLEDYSQ- 312 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 T ++++ V +L+T + F + T ++D ++ + D S Sbjct: 313 -------TLVLDSDVFNAMVNRLKTSKTFVFDLETTSLDYMNATIVGWVFLV----DKNS 361 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 F V L+ D K++L LK E+ K+G N+KYD +L Y I Sbjct: 362 FYVPVGHDYLNAPKQLD-------FKDVLDQLKLILEDVSIGKVGQNLKYDAHILANYQI 414 Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537 ++G +D M+ SY L+S + H+I +++ +L++ +I K I +++ Sbjct: 415 DLQGISDDTMVKSYCLNSVATRHNIDDLSEYYLNHKTIHFDDIAGKGKKQITFNQVDLET 474 Query: 538 VQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +A E V L +L +++ KL+ +Y+ L+ P+I V+ ME GI++D + L Sbjct: 475 AFPYACEYVIVTDLLNHVLDEEIVQYPKLVKLYQNLELPLIKVLLCMERNGIELDMNELS 534 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT--KLKFPSGAKTKTGQWKTTA 654 +I + + ++ +++L+G+ FNL SPKQ+ ILF L KT G T Sbjct: 535 TQQIDIVQQMKDIQAQVFELAGDIFNLESPKQIQQILFEPEGLGLTPLKKTPKGAPSTNE 594 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 + L+ + D+P++ IL +R L+K+ STY ++LP I+ T R+HT Y A T+TGRL+ Sbjct: 595 EALKLL---DHPLVDLILSYRTLTKLNSTYLEALPKQIDLNTHRLHTSYHQAVTVTGRLS 651 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S PNLQNIPI++ G +IR AF++ +I+ADYSQIELRI+A +++ L F + Sbjct: 652 SSNPNLQNIPIRSKQGARIRGAFVAGKDNVIIAADYSQIELRIMAQLSQDKNLLDAFNHD 711 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 D+H + A+ +F + I +V+ + RR +K INF +IYG+S F L Q+ + EA YI Sbjct: 712 KDVHSVTASTMFNMPINEVTKKHRRRSKAINFGLIYGMSAFGLTKQIDVSIIEAKQYIDT 771 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF +PG+ Y++ K + GYVET+ GRR++ +INS ++ R AINAP+QG Sbjct: 772 YFDNYPGVLHYMDSIKESAKVWGYVETVMGRRLYLPQINSKNKILQQHALRTAINAPMQG 831 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 S+ADI +++M+ +H + ++ +M++Q+HDELVFEV E + + I M L Sbjct: 832 SSADIIKKSMLDIHAWIGENNPDIRMIMQVHDELVFEVSESKADEFAHKIQGLMANVYL- 890 Query: 955 KINLRVPLKVNIKVSNNWQ 973 L +PLKVN+ + +WQ Sbjct: 891 ---LDIPLKVNVGIGTSWQ 906 >gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2] gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2] Length = 888 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 323/972 (33%), Positives = 508/972 (52%), Gaps = 97/972 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R++YA P L K G P + GF N + L+ R + I FA+ D Sbjct: 4 LTIIDTFGFFFRSYYALPPLKSKK-GFPTGLLTGFINFINSLVSEERSDYIV--FAL--D 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +FR +I +YKA RP+ PE L QLP+ Q G + +GFEADDIIA+ Sbjct: 59 SEGPSFRAKIDSEYKAQRPEPPEELKMQLPVAIKWIQEMGFKTLAKEGFEADDIIASLVK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A+++G V I+S DKDL QL+ LYD +K+E+ID E KK+GIPP+ + AL Sbjct: 119 CAKEQGIKVKIVSHDKDLYQLIDDGKVVLYDPIKKEEIDEEKATKKFGIPPKLIKDYLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ GIG KTA LL+++G+LE I + +K ++ ++ ++E E A LS+K Sbjct: 179 VGDSADNIPGVKGIGPKTAVKLLEQFGSLEGIYEHLDEVKPERIKKLLIEGKEKAFLSKK 238 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LV L +V +H L+ + P +I P++ Sbjct: 239 LVELDENV-----FDHCNLQQFHLP---------------------------SINPII-- 264 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 IA E ID D T + + Q SK S Q I Sbjct: 265 -------KIADEL-IDYDITAILRKIKAAPLQQSKKQSVQFE--------------AICL 302 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 D+Y K++ +Q + +F TD +D + + + + ++K ++ V Sbjct: 303 DTYDKLIKA------IQSIPEGALVAFDTETDDLDTKKANLVGFSFAYSEEK---AYYVP 353 Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MR 484 L V G + L + K FE H + IGHN+K+D +L+RYGI + Sbjct: 354 IGHNYLGV-------GDQVGLDKALEAISKIFE--HTI-IGHNLKFDLSLLYRYGIDEKK 403 Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544 D M++++++D G SS + S+A+++L + ++ K ++S ++A E Sbjct: 404 DIVDTMILAWLVDPG-SSVGLESVAKRFLDHDMIAYKETVKKGEDFSQVSIDAACKYASE 462 Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDK---PMIDVVSQMEITGIQIDQDLLKQVSAE 601 ++ + ++ L L + H+ + K P ++ + ME GI+ID +++ + Sbjct: 463 DAVITYMVYFKLLDALRKQGASHLIDEAKKVEFPFVNTLIHMEQAGIKIDIPFFEELKSS 522 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + K + + + IY+ +G +FN++S KQL ILF KLK P KTK+G + T L+ + Sbjct: 523 LEKRIDEITQKIYEYAGGEFNINSTKQLAAILFEKLKLPPLKKTKSG-YSTNETTLQALK 581 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLEPNL 720 +PII +LE+R+L K+KSTY D L N+ + + R++T + T TGRLAS PNL Sbjct: 582 -DKHPIIPLLLEYRELYKLKSTYIDPLINYAKRDPKHRIYTSFIQTGTATGRLASKNPNL 640 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIPIKT+LG+KIR FI+ + LI DYSQIELR+LAH +K L + F+ DIH Sbjct: 641 QNIPIKTELGRKIRYGFIAGEGRLLIGIDYSQIELRLLAHFSKDPALLEAFQKGRDIHME 700 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A ++FG ++ + + R AK+INF +IYG+ +LA L I EA I+ YF FP Sbjct: 701 TAIKLFG---KEHAKEKRNIAKSINFGLIYGMGSRKLAETLGISTKEAKAIIESYFASFP 757 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 + Y+E +NF + +GYVET+ RR ++D ++ + + R A N QGSAAD+ Sbjct: 758 TVKSYLESVENFAKTHGYVETLLKRRRYFDFAHASGAQLAAYL-REATNTVFQGSAADLI 816 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 + AM + +++ +L K+LLQIHDEL+FEV E + +Q + ++ L V Sbjct: 817 KMAMNKIKNVIDEKQLEAKILLQIHDELIFEVQENQ----AQELAEEFKQIMQTIHPLNV 872 Query: 961 PLKVNIKVSNNW 972 P++ +++++ NW Sbjct: 873 PIECSVQIARNW 884 >gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703] Length = 612 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 258/622 (41%), Positives = 394/622 (63%), Gaps = 29/622 (4%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 ++ ++Y I++ K + W+++L+ +F TD +D S I + SF Sbjct: 8 LSQENYQTILDEKSLSDWIERLKKAEVFAFDTETDGLDTLSSNLIGL-----------SF 56 Query: 423 KV---ETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 V E ++ L+ H D+ + L ++ +L+ LK E++ LK+G N+K+D+ +L R Sbjct: 57 AVAPGEAAYLPLA-HDYLDAPAQ--LDRDWVLAQLKPLLEDDKALKVGQNLKFDQSMLAR 113 Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534 YGI +RG D ML SYVLDS HD+ S+A+++L++ T +EI K+ + ++I+ Sbjct: 114 YGIDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIA 173 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 Q +A E+++V LQL L+L PKL E L V++ ++ P++ ++S++E TG+ IDQ+ Sbjct: 174 LEQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPILSRIERTGVLIDQN 233 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 +L S E++ L LE+ ++L+ E FNL+SPKQL IL+ K K P KT G T Sbjct: 234 ILVAHSKELTIRLDELEKQAHELAEEPFNLASPKQLQVILYEKQKLPILKKTPGGAASTN 293 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + L ++ D P+ K ILE+R L+K+KSTY D LP IN + RVHT Y A T TGRL Sbjct: 294 EEVLAELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRVHTSYHQAVTATGRL 352 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIP++ + G++IR+AFI+P ++++ADYSQIELRI+AH+++ L F Sbjct: 353 SSRDPNLQNIPVRNEEGRRIRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAA 412 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIHR AAE+FG+++EKV+ + RR AK INF +IYG+S F LA QL IPR EA Y+ Sbjct: 413 GKDIHRATAAEVFGLSLEKVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMD 472 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF R+PG+ EY+E+T+ + GYV T+ GRR++ +I+S ++ R ER AINAP+Q Sbjct: 473 LYFERYPGVLEYMERTRKQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQ 532 Query: 894 GSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 G+AADI +RAMI+V L+ + ++++Q+HDELVFEV E + +A Q I ME++ Sbjct: 533 GTAADIIKRAMIAVDAWLQQQPEPLVRVIMQVHDELVFEVHESVLESAEQKIRELMEQS- 591 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + L VPLKV++ V NW + Sbjct: 592 ---MQLAVPLKVDVGVGYNWDQ 610 >gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102] gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102] Length = 978 Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust. Identities = 332/1015 (32%), Positives = 515/1015 (50%), Gaps = 100/1015 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIAS 59 LVDG S YR+++A ++ DG +P + GF L +++ + +++A Sbjct: 15 FILVDGHSLAYRSYFA---FAKGRDGGLRTKAGIPTSICFGFVKCLLEVMATQQPQAMA- 70 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + FD TFR+E YKA+R + PE +P L + F IP G+EADD Sbjct: 71 ---IAFDLGEATFRHEADETYKADRKETPEDFIPDLANLHELLNGFNIPIFTAPGYEADD 127 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLV-----------SPTTCLYDTVKEEKIDIEHV 168 ++ T G+ V I++ D+DL QL+ SP T + + E V Sbjct: 128 VLGTLAQRVTAAGYRVKILTGDRDLFQLIDSDKEITVLNFSPDAIKRSTNSITEFEAEQV 187 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 +K G+ P +++ +AL GD DNIPG+ GIG KTA LL YG+L+NI IK Sbjct: 188 KEKMGVLPSQIIDFKALCGDKSDNIPGVKGIGEKTAVQLLNTYGSLDNIYAALDEIKGAT 247 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +++ + E A SR L + DVPI I LE L+ + L L+ LEF + ++ Sbjct: 248 QKK-LASGREDADKSRYLATIVLDVPIEINLEDCKLKGFDTSVLSPILEKLEFKSFLGKI 306 Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348 +E + + I ++E+ RD F S SD + PQ Sbjct: 307 NDLQQRFGGKVE----EKQEAKTDVINPKSEL-RDDEDNDLWFFSASDTAA------VPQ 355 Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTK-DIQQWVQKLETIGSASFKIITDT----MDAFH 403 + S PI +I+NT+ + + V+ L+T + + DT ++ Sbjct: 356 Q---------STSPIT----PRIINTEAKLTELVKLLQTFTTPDIPVAWDTETTALEPRD 402 Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463 + + I Q D E +I L TG+N +L L+ E+ + Sbjct: 403 ADLVGIGCCWGMQPD------EVAYIPLG-----HKTGENLHKDLVLEGLRPILESADYP 451 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K N K+D+LVL GI++ G D ML SY+L+ SSH++ + Q++L K L Sbjct: 452 KALQNAKFDRLVLKCQGINLAGVVFDPMLASYILNPD-SSHNLMDLGQRYLGLIAKSYLD 510 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVS 581 I I V ++ ++ L LR +L + L + +++P+ V++ Sbjct: 511 LVPKGKTIADIDIPSVADYCGMDAYSTFGLVPKLREELDKIPTLSKLLVEVEQPLEAVLA 570 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 QME TG++I+ LK++S + L L+E ++GE FNL SPKQL ILF KL + Sbjct: 571 QMEYTGVRINSAYLKELSQHLETELARLKEEATKIAGENFNLGSPKQLSQILFEKLGLST 630 Query: 642 --GAKTKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 K +TG + T A LE++ D + ++ I+E+R LSK+KSTY D+LP + TQR Sbjct: 631 KHSRKIQTG-FSTDAATLEKLQEDDKSGFVEAIIEYRTLSKLKSTYVDALPALVRPDTQR 689 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT ++ A+T TGRL+S PNLQNIPI+T ++IR+AF+ +++ADYSQIELRIL Sbjct: 690 VHTDFNQAATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPEAGWLMVAADYSQIELRIL 749 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH+++ L Q ++ + D+H + +F EK++ + R AKTINF +IYG+ R + Sbjct: 750 AHLSQEPILVQAYQQNEDVHTVTGRLVF--EKEKITSEERGIAKTINFGVIYGMGSLRFS 807 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN----- 873 I ++ A ++IKR+ R+P + Y+E+ K GYVETI GRR ++D N Sbjct: 808 RSTGIDKNIANEFIKRFNERYPKVFAYLEQVKKEAIALGYVETILGRRRYFDFTNNSLRR 867 Query: 874 ----SPK----SSIRNINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 +P+ S ++N+ R+A NAPIQGS ADI + AM+ +H+ L++++ + Sbjct: 868 LKGSNPEDIDLSKLKNLGPYDAGLLRSAANAPIQGSNADIIKIAMVRLHEVLKNYQ--AR 925 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +LLQ+HDELVFE+P +E I ME A + L VPL V +V NW + Sbjct: 926 LLLQVHDELVFEIPPDEWEELQPQIKSVMENA----VQLSVPLLVEARVGENWMD 976 >gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424] gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424] Length = 966 Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust. Identities = 341/1026 (33%), Positives = 531/1026 (51%), Gaps = 128/1026 (12%) Query: 7 LFLVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG S +RA++A PL R G+P + GF N L +++++ + + + Sbjct: 9 LILIDGHSLAFRAYHAFAHTKQGPL--RTSTGIPTSVCFGFLNSLLQVIESQQPQCVI-- 64 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 + FD +FR+++ P+YK +R + PE +P L ++L A + + + G+EADDI Sbjct: 65 --IAFDRKEPSFRHQLDPNYKGDRKETPEEFIPDLENLKLLLSALNLQIVTVAGYEADDI 122 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKEE------KIDIEHV 168 + T A + + V I++ D+DL QLV + LY + K +++ V Sbjct: 123 LGTLALKASQANYKVKIVTGDRDLFQLVDAQKKISVLYLEKNAFKASSPNGYTEVNPAEV 182 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 +K G+ P ++V +AL GD D+IPGI GIG KTA LL+EYG LE I N IK Sbjct: 183 EQKLGVKPNQVVDYKALCGDKSDSIPGILGIGEKTAVTLLKEYGTLEGIYQNLESIKGAL 242 Query: 229 RRENILEYA-ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 +++ LE E A+ SR L L DVP+ L+ + L+ LE K I Sbjct: 243 KKK--LETGEENAKHSRILAQLALDVPVEFDFNTCQLKGFELETIRPLLEKLELKKFIQ- 299 Query: 288 VATTYDCDAANIEPVVLDINTTENK-GIAIETEIDRDTTIKTSQFS-SLSDQTSKINSEQ 345 +IN + K G + + + + S F S SD ++N + Sbjct: 300 -----------------NINRLQEKFGGVVSLPSQSNESQQLSLFPVSGSDSIEQVNQTE 342 Query: 346 TPQKL-FLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFH 403 + KL F+E +++NT + + Q V+ L+ + + + DT Sbjct: 343 SITKLNFIE---------------PQLINTSEKLTQLVKLLKQYTNPAQPVAWDT----- 382 Query: 404 SKPIAIAISTLDQKDDTSFKV---------ETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454 ++L+ KD T + E +I L+ HT G+ +E+LS L Sbjct: 383 ------ETTSLEPKDTTLVGIGCCWGEQPTEVAYIPLN-HTE----GEQLPQEEVLSALS 431 Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL 513 E+E++ K+ N K+D++VL GI + G D ML SYVL SH ++ + +++L Sbjct: 432 VILESENYPKVFQNTKFDRIVLLNKGIKLAGVVFDTMLASYVLRP-ELSHKLSDLCERYL 490 Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-----KLLHV 568 + L R IP + E + +L PKLI E L + Sbjct: 491 ENIKA--LNYRDLEIPKTQTIAHLSLEKVAHYCGMDAYATFMLVPKLIAELKQAPDLYEL 548 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 ++++P+ V+++ME TG+ ID L Q+S ++ ++L LE Y+ +GE FNL SPKQ Sbjct: 549 LLKVEQPLEPVLAEMENTGVCIDTAYLNQLSQQLEQDLQILETKAYEAAGESFNLGSPKQ 608 Query: 629 LGDILFTKLKFP--SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 L +ILF KL K KTG + T LE++ GD+PII ILE R L+K+KSTY D Sbjct: 609 LSEILFEKLGLNKRKSRKLKTG-YSTDHATLEKLQ-GDHPIIDYILEHRTLAKLKSTYVD 666 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 +LP ++ +T RVHT ++ A T TGRL+S PNLQNIPI+T+ ++IR+AFI+ L+ Sbjct: 667 ALPALVHPQTGRVHTDFNQAVTTTGRLSSSNPNLQNIPIRTEFSRQIRKAFITQDDWLLV 726 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 SADYSQIELRILAH+++ L + ++N D+HR+ A +F + E ++ + R KTINF Sbjct: 727 SADYSQIELRILAHLSQEPVLLEAYQNYQDVHRVTAQLLF--DKEVITSEERSIGKTINF 784 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 +IYG+ R A + + E D+I +Y ++ + EY+E+ K G+V TI GRR Sbjct: 785 GVIYGMGAQRFARSMGLSFQEGKDFIDKYHQKYARVFEYLERVKKEAIAKGFVTTIKGRR 844 Query: 867 IHYDEINSPKSSIR------------NINE------RAAINAPIQGSAADITRRAMISVH 908 +++ + + +R N+N RAA NAPIQGS+ADI + AM+ +H Sbjct: 845 RYFEFFDDKLNHLRGEKPENLDLDKLNLNYSDAQLLRAAANAPIQGSSADIIKIAMVQLH 904 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 + L+ ++ ++LLQ+HDELVFE+P +E I +ME A + L VPL V+I+ Sbjct: 905 EILQHYQ--ARLLLQVHDELVFEIPPDEWEDLQVKIKDTMENA----VKLTVPLVVDIRS 958 Query: 969 SNNWQE 974 NW E Sbjct: 959 GKNWME 964 >gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] Length = 908 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 334/978 (34%), Positives = 510/978 (52%), Gaps = 85/978 (8%) Query: 7 LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H + Sbjct: 4 LYLIDALNIIFRNYHVMKNYPLLNTR--GENVNAFIGFFKTLFFII----KEKNPKHLII 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR + YP+YKA R P+ L+PQ+ ++ IP EI+G+EADD++A+ Sbjct: 58 TFDSEIPTFRKQKYPNYKATRDAPPDDLIPQIGWIKEGLLKAKIPIFEIEGYEADDLLAS 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVC 181 + A K + IIS DKDL+Q +S + ++D E+VIKK+GI ++ Sbjct: 118 FAKKAAKNNYLTYIISPDKDLLQTMSEHIKILKIENNSFVEMDNEYVIKKFGINSFQIKD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK +E +++ E A Sbjct: 178 YLAIVGDRSDNIPGIKGIGPKGAANLLREFKTLKGIYSNLELI-SKKHQEILIKEKENAF 236 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LS LV L D+ I +E+ L++ LIS + LI TY D Sbjct: 237 LSYDLVSLEEDLKIP-EIENFSLKNF-SKELISLFEKHSAISLI----KTYKKD------ 284 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 I E + +A + S F+ Q+ + L L+ Sbjct: 285 ----ILKQEEENVA-----------QKSLFT---------------QEPIADNLDTLNTI 314 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 N Y I K++ ++ L+ S T ++D + ++ I I+IS Sbjct: 315 DTENVKYHSITTKKELDNLIESLKKAKYISIDTETSSLDIYTARLIGISIS--------- 365 Query: 422 FK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 FK E +I + ++ GK + K I+ FE+ + IG N K+D +L Sbjct: 366 FKEFEGYYIPI------EAKGKIYIEKHYIIQKFNNLFESNPKI-IGQNYKFDYKILKNN 418 Query: 480 GIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538 G S + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 419 GFSPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMA 477 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++ E++++ +L+ + KL + L + ++ P +V+ +ME GI +D++ LK+ Sbjct: 478 TSYSSEDADITFRLFNIFTKKLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEY 537 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQD 656 E+ + L +E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 538 GKELGQELELIENEIIKSIGINFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKV---- 593 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + G + I+NI++ RQ++K+KSTY D+L IN +T R+HT + T TGR+ S+ Sbjct: 594 LESL-IGQHESIENIIKHRQIAKLKSTYTDNLIELINHKTNRLHTSFIQTKTATGRITSI 652 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ D Sbjct: 653 NPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKD 712 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I YF Sbjct: 713 IHTETASKLFKIEEKEITPDLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYF 772 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 +P I E+I NFVR GY ETI RR + EINS R+ ER AIN+ IQGSA Sbjct: 773 DSYPKIKEFITNQINFVRNTGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSA 832 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AM+ V + K+ +K+LLQ+HDE++ E P +E +I+ ME A Sbjct: 833 ADIMKIAMVRVFNEFKSKKMESKILLQVHDEMLIESPIKEKNEVEKILKIMMETAY---- 888 Query: 957 NLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 889 TLNLPLRANIETGKSWGE 906 >gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413] gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413] Length = 977 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 331/1017 (32%), Positives = 526/1017 (51%), Gaps = 107/1017 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 LVDG S +R+++A R G+P + GF L +++ + +++A Sbjct: 17 FILVDGHSLAFRSYFAFAKGRDGGLRTKTGIPTSVCFGFLKSLLEVMATQQPQAMA---- 72 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR+E YKA+RP PE +P L + + F +P G+EADD++ Sbjct: 73 IAFDLGLPTFRHEADDTYKADRPGTPEDFVPDLKNLHELLEGFNLPIYTAPGYEADDVLG 132 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKEE-----KIDIEHVIKK 171 T A EG+ V I++ D+DL QLV P T L D +K ++ E V ++ Sbjct: 133 TLAQKATAEGYKVKILTGDRDLFQLVDPEKEITVLNFSPDALKRSTNSITEVSTEQVKER 192 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 G+ P ++V +AL GD DNIPG+ GIG KTA LL YG+L+ + + IK +++ Sbjct: 193 LGVLPTQVVDFKALCGDKSDNIPGVRGIGEKTAVQLLSTYGSLDGVYKALNEIKGATQKK 252 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 + E E A S+ L + DVP+ + LE L + LI L+ LEFT+ +++ Sbjct: 253 -LAEGKEDAAKSQFLAKIVVDVPLEVNLEDCKLVGFDESLLIPILEKLEFTRFLSQ---- 307 Query: 292 YDCDAANIEPVVLDINTTENK--GIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349 IN + + G +E E I+T++F D + +E+T Sbjct: 308 --------------INDLQRRFGGTVVEVEKTEVAAIETTKFED--DDIAFYTAEET--- 348 Query: 350 LFLERLQKLSQYPINNDSYTKIVNTK-DIQQWVQKLETIGSASFKIITDT----MDAFHS 404 Q + Q + +I+NT+ + + VQ L+ + + DT ++ + Sbjct: 349 ------QAIQQNQPASPIQPRIINTEAKLIELVQILQQFTNPETPVAWDTETSGLEPRDA 402 Query: 405 KPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464 + I + D +++ I L+ HT G+N +L+ L+ E+ + K Sbjct: 403 ALVGIGCCWGTEADASAY------IPLA-HTK----GENLSQDIVLTALRPILESADYPK 451 Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523 N K+D+LV GI++ G D ML SYVL+ +SH++ + Q++L T + + Sbjct: 452 TFQNAKFDRLVFLVQGINLTGVVFDPMLASYVLNPD-TSHNLTDLTQRYLGLTIQNYVDL 510 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI----VEKLLHVYERLDKPMIDV 579 I I+ S V + QL LR +L ++KLL +++P+ V Sbjct: 511 VPKGKTIADINISAVANYCCLQVYATFQLVAKLREELAKTPNLDKLLR---EVEQPLESV 567 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 ++ +E TG++ID L ++S ++ +L L+E +L+GEKFNL SPKQL ILF KL Sbjct: 568 LATVEYTGVRIDSAYLHELSQQLEIDLAKLQEQATELAGEKFNLGSPKQLSYILFEKLGL 627 Query: 640 PS--GAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 + K +TG + T A LE++ + + I E+R LSK+KSTY D+LP + T Sbjct: 628 STKYSRKIQTG-YSTDAATLEKLQEVDETGFVNAITEYRTLSKLKSTYVDALPALVRPDT 686 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 QRVHT ++ +T TGRL+S PNLQNIPI+T ++IR+AF+ + +ADYSQIELR Sbjct: 687 QRVHTDFNQTATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPKSGWLMAAADYSQIELR 746 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 ILAH+++ L Q ++ + DIH + A +F + ++ RR AKTINF +IYG+ + Sbjct: 747 ILAHLSQEPLLVQAYQQNEDIHTVTAKLVF--EKDDINSDERRIAKTINFGVIYGMGSLK 804 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD------ 870 + I ++ A ++IKR+ R+ I Y+E K GYVETI GRR +++ Sbjct: 805 FSRSTGIDKNVANEFIKRFNERYAKIFAYLEGVKKQAISLGYVETILGRRRYFNFDSTSL 864 Query: 871 ---EINSPK----SSIRNINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917 + ++P+ S ++N+ R+A NAPIQGS+ADI + AM+ +H+ L+ ++ Sbjct: 865 LNLKGSNPEDIDLSKLKNLGAKDAGLLRSAANAPIQGSSADIIKIAMVQIHEVLKKYQ-- 922 Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++LLQ+HDELVFEVP +E I ME A + L VPL V+++ NW E Sbjct: 923 ARLLLQVHDELVFEVPPQEWAELQPQIKSVMENA----VKLSVPLVVDVRAGENWME 975 >gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae] Length = 920 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 316/980 (32%), Positives = 500/980 (51%), Gaps = 78/980 (7%) Query: 7 LFLVDGSSFIYR---AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 ++D +YR F PLL+ K G V++I GF + L+ A + A+ Sbjct: 5 FLIIDAFGILYRYHFIFLKRPLLNSK--GQNVSSINGFMRTYFSLINTYP----AEYVAI 58 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 D TFRNEIY +YK NR +P+ L Q+P++ A GI I + +EADDI+ T Sbjct: 59 ALDSSRKTFRNEIYKEYKENRESMPDDLRSQIPILYNLIDALGISRIVLDNYEADDIVGT 118 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIPPEKMV 180 +KE I S DKD++QLV + + K+ ++ D + V +K G+ P +++ Sbjct: 119 IAERNKKENIKTIIYSPDKDILQLVDDDVKVVASNKDNELMEYDAQAVKEKRGVYPNQII 178 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L +L GD+ DNIPG+ G+G KTA LL+EY +L+ I N IK K +E +LE + A Sbjct: 179 DLLSLMGDASDNIPGVKGVGEKTALKLLEEYKSLDGIYENIDSIKG-KIQEKLLESKDMA 237 Query: 241 RLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 +S KL + ++ + + N + L LE ++ ++ I Sbjct: 238 YMSYKLATIERNIEGFNLDYNEIASSKINIDEVNKILDELELKQIRDK-----------I 286 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 + + E+K +I++D KT + LS + Sbjct: 287 NSYIYGSSKKEDKVKISNDKINKDNDSKTEEAPILSAKD--------------------- 325 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 N SY I N +++ ++ + + T +D F I I+ + Sbjct: 326 ----NKSSYYLIENETELENLLKDINSKKLVCIDFETTGLDTFKDTIIGISFAIKSN--- 378 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 E ++DLS T GK+ + L+K E IGHN+KY+ ++ Sbjct: 379 -----EAFYLDLSGRT---KIGKDKCMNLVFDTLEK----EDIKVIGHNLKYEYKMMKAI 426 Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535 G S+ + D M+ +Y+++ R +++ +A +LSY ++ + K ++ + D Sbjct: 427 GKSIGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYSDLTDNAKKTLLDAPLKD 486 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 V E+A E+++V + + P L L ++ ++ P++ V++ ME G+ I + + Sbjct: 487 --VVEYACEDADVTFRFYECFAPLLKTHNLEELFFNIEMPLVSVLADMEFDGVYISSERM 544 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 K +S E S L +E IY +GE+FNL SPKQL ILF K+ P KTKTG + T + Sbjct: 545 KALSDEYSSLLEKTKEKIYAEAGEEFNLQSPKQLEYILFDKMGIPPTKKTKTG-FSTDEE 603 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 L ++ I + +L +R+ +K+K+TY D P IN++T R+H ++ T TGRL+S Sbjct: 604 VLTEL-SQKYKIAEYMLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGRLSS 662 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 EPNLQNIP++ + G++IR FI LI+ADYSQIELR+LAH + L + F+N+ Sbjct: 663 SEPNLQNIPVRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNND 722 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR A +I+ V+ E V+ MR AK INFSIIYG + F L+ +L I + EA D+IK Y Sbjct: 723 DIHRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKKKEAEDFIKGY 782 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGR-RIHYDEINSPKSSIRNINERAAINAPIQG 894 + + + ++ VR G+V T+ GR R INS + RN ER A+N IQG Sbjct: 783 SSTYSRVKPFCDEVVEEVRNKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLIQG 842 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 SAAD+ + AM+++HK ++H K+++Q+HDELV EV E E A I+ ME + Sbjct: 843 SAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAMTIMKEIMEHS--- 899 Query: 955 KINLRVPLKVNIKVSNNWQE 974 + VP+ V+I N+W E Sbjct: 900 -VKANVPIIVDIHKGNSWGE 918 >gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002] gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002] Length = 973 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 342/1020 (33%), Positives = 516/1020 (50%), Gaps = 110/1020 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L L+DG S +R +YA R G+P + GF N L ++++ + +++A Sbjct: 6 LLLIDGHSLAFRCYYAFAKSRQGALRTSTGIPTSICFGFLNALVQVIERQKPDAVA---- 61 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD P TFR+ +YKA R P+ P + + + + G+EADD++A Sbjct: 62 IAFDRPEPTFRHTADENYKAQRKPAPDDFRPDFENLLDLLDSLNVSRVTAVGYEADDVLA 121 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLYDTVKE------EKIDIEHVIKKWG 173 T A + G V I++ D+DL QLV P + LY K E+ E V K G Sbjct: 122 TLARQASEAGQQVKILTGDRDLFQLVDPDKKISILYLDTKGVKSGSYEEFTPELVEAKLG 181 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRE 231 + PE++V +AL GDS DN G+ GIG KTA L+ E+G+L+NI N IK KKR E Sbjct: 182 VKPEQVVDFKALAGDSSDNYKGVQGIGEKTAIKLIHEFGSLDNIYANLDNIKGATKKRLE 241 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 + A +KL + D P+ I L L L N + I L LE K I + Sbjct: 242 TD---KDAAYHCQKLAKIAQDAPLDILLNELHLTGFNLEQAIGILTKLELKKFIQDIGRI 298 Query: 292 YDC-DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS-SLSDQTSKINSEQTPQK 349 A IE L+ + N T +D + S F+ S DQ N QTP Sbjct: 299 QQIFGAETIEIPTLESVQSNN------TIVDEAGNAQLSIFAPSDPDQ----NQAQTPPT 348 Query: 350 LFLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDT-MDAFHSKPI 407 + +Q L I++T + + + + +L+T + + DT + + Sbjct: 349 ATISPIQPL------------IIDTAEKLTELIDQLKTQTDVNHPVAWDTETTGLDPREV 396 Query: 408 -AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK-EILSYLKKFFENEHFLKI 465 + I +D + +I ++ H N L K +I LK E E + K+ Sbjct: 397 DLVGIGCCWGRDPGNIA----YIPIAHHNG------NQLEKTQIFQALKPILETEKYPKV 446 Query: 466 GHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL----SYTRKEI 520 N K+D+ + GIS+ G D ML SYVL H++ ++ ++L + + K++ Sbjct: 447 FQNAKFDRAIFAHQGISLAGVVFDTMLASYVLHP-EMKHNLTDLSLRYLGNIIAKSYKDL 505 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-----KLLHVYERLDKP 575 ++K +I +IS A E + + L+ KL VE L + E+++ P Sbjct: 506 GLTKKQTIADLEIS------VAAEYCGLDVYTTYLVCQKLKVELKDYPDLEKLLEKVETP 559 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + V+ ME TGI+IDQD L+Q++ E+ +L LE Y+ + E+FNL+SPKQLG+ILF Sbjct: 560 LEPVLCAMENTGIRIDQDYLQQLAEELGADLTDLEIKAYNAADERFNLNSPKQLGEILFE 619 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 KL + KT +T + + GD+PII ILE+R L+K+KSTY D+LP ++ + Sbjct: 620 KLGLNTKKTRKTKTGYSTNHAVLEKLQGDHPIIDYILEYRTLAKLKSTYIDALPTLVSPK 679 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T R+HT ++ T TGRL+S PNLQNIP++T+ Q+IRRAFI L++ADYSQIEL Sbjct: 680 TDRIHTDFNQTLTSTGRLSSSNPNLQNIPVRTEFSQRIRRAFIPKENWVLVAADYSQIEL 739 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM-----RRHAKTINFSIIY 810 RIL H+++ L Q ++ D+HR+ A IF ++ SPQ RR K INF +IY Sbjct: 740 RILTHLSQEPILLQAYQAGEDVHRVTAQMIF----DRDSPQAVTAAERRIGKIINFGVIY 795 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 G+ R A + + + E +I RY R+ + EY+E K GYV TI RR ++D Sbjct: 796 GMGAQRFAREAGVSKEEGRAFIDRYHERYAKVFEYLELVKKQAIAQGYVSTILQRRRNFD 855 Query: 871 EINSPKSSIRNINE------------------RAAINAPIQGSAADITRRAMISVHKSLE 912 I++ ++ + RAA NAPIQGS+ADI + AMI +H+ L+ Sbjct: 856 FISNCLIELKGSDPKAIDLDSLDYAYNDAQLLRAAANAPIQGSSADIIKVAMIQIHELLK 915 Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 D++ ++LLQ+HDELVFE+P EE I +ME+A + L +PL V+I NW Sbjct: 916 DYQ--ARLLLQVHDELVFEMPPEEWEELGSKIKTTMEQA----VPLSIPLVVDIHCGKNW 969 >gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S] gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S] Length = 928 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 240/625 (38%), Positives = 369/625 (59%), Gaps = 32/625 (5%) Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 PI+ Y +V + + +W+ + G + TD +D + ++++ Sbjct: 318 PIDRSLYETVVTEEALDRWIAAVHAEGLVAVDTETDMLDCVSCALVGVSLA--------- 368 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKE--------ILSYLKKFFENEHFLKIGHNIKYDK 473 + + + + GK+ ++ +L+ LK E++ LKIG N+KYD Sbjct: 369 -----VGPNAACYIPVGHGGKDMFAEKPDQLPLPLVLAKLKPLLEDDSVLKIGQNLKYDI 423 Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRS--SHDIASIAQKWLSY---TRKEILKSRKSSI 528 VL R+GI + ++D ++MS+ LD+G+S H + A+ L++ + K++ + +S I Sbjct: 424 TVLRRHGIEIAPYDDTIVMSFDLDAGQSLAGHGMDEAARVHLNHVCISFKDVCGTGRSQI 483 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 ++ + E+A E+++V L+LW L + ++ E VYE +D+P++ V+++ME GI Sbjct: 484 SFAEVPLDKATEYAAEDADVTLRLWRLFKSRIANEGATRVYELVDRPLVGVIAKMEHEGI 543 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ++D++ L ++SAE + + +LE I+ L+G+ F + S +QLG ILF K+ + G K K+G Sbjct: 544 KVDREALSRLSAEFTAGIAALEGEIHALAGQPFAIGSTQQLGAILFDKMGYKGGRKGKSG 603 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T LEQ+ I +L+WRQLSK+KSTY D+L INK + RVHT YSL+ Sbjct: 604 AYSTDVTILEQLKAQGAEIAGKVLDWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLSGA 663 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIPI+T++G++IR AF++ P +++ADYSQIELR+ AH+A + L Sbjct: 664 QTGRLSSTDPNLQNIPIRTEVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALK 723 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 + F N DIH A ++FG +V+ R AKTINF+I+YGIS + LA +L I EA Sbjct: 724 EAFANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEA 779 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 D I RY+ RFPGI YI T R GY ET+FGR+ + I +P R ERAAI Sbjct: 780 QDMISRYYERFPGISLYITDTIEKARSRGYTETLFGRKTWFPRIKAPVQHERQGAERAAI 839 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 NAPIQG++ADI +RAM + +L L KMLLQ+HDELVFE+PE ++ A +I Sbjct: 840 NAPIQGTSADIIKRAMARMGPALAAEGLHRVKMLLQVHDELVFELPEGDVEHAGAVIRRV 899 Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972 ME A P + L VPL V I ++W Sbjct: 900 MEGAAEPIVKLSVPLGVEIGHGSSW 924 Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 138/282 (48%), Positives = 194/282 (68%), Gaps = 1/282 (0%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +NHL+LVDGS +I+RA++ P L+ +H G PV A+ G+ MLWKL K +H AV Sbjct: 3 QNHLYLVDGSGYIFRAYHQLPPLTNRH-GQPVGAVYGYTTMLWKLADELGKAEGPTHLAV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 + D + TFRN++Y YKANRP PE L+PQ P++R AT+AF +P IE GFEADDIIA+ Sbjct: 62 VLDKGSHTFRNDMYDAYKANRPPPPEDLVPQFPMIRDATRAFSLPCIEEAGFEADDIIAS 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 YT A +G+ VTI+S+DKDLMQL+ P +YDT+K E+ ++V+ K+G+ PE++ + Sbjct: 122 YTKAAVAQGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMTKFGVRPEQLGDVL 181 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GDS+DN+PG+PGIG KTAA L+ EYG LE L A R+K+ K +EN++E+A+ ARLS Sbjct: 182 ALMGDSVDNVPGVPGIGPKTAAKLITEYGGLEAALEAAPRMKKSKMQENLIEHADMARLS 241 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 R+LV L + + PL+ L L+ L +FL+ F L+ Sbjct: 242 RRLVALHDGMDLPEPLDDLTLKGIPLEPLQAFLEHHGFKSLL 283 >gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802] gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802] Length = 972 Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust. Identities = 344/1023 (33%), Positives = 535/1023 (52%), Gaps = 117/1023 (11%) Query: 7 LFLVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG S +R++YA PL R G+P + GF N L +++++ + E + Sbjct: 10 LILIDGHSLAFRSYYAFAKARKGPL--RTSKGIPTSVCFGFLNSLMQVIESQKPE----Y 63 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A+ FD TFR+E +YKA+R + PE + + ++ +A + + G+EADD+ Sbjct: 64 LAIAFDRSEPTFRHEADENYKADREETPEDFIIDMANLQELLEALNLTIVTFPGYEADDV 123 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY---DTVKEE-----KIDIEHVI 169 + T + G+ V I+S D+DL QLV + LY + VK + + E V Sbjct: 124 LGTLANQGSESGYQVKIVSGDRDLFQLVDEAKNISVLYLERNAVKGSSEGYTEFNSEAVE 183 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---Q 226 K GI P ++V +AL GD D+IPGI GIG KTA LL+EYG ++ + N +IK Sbjct: 184 AKLGIKPVQVVDYKALCGDKSDSIPGIDGIGEKTAVKLLKEYGTIQEVYNNLDKIKGTLN 243 Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 KK ++ + E A S+ L + DVP+ I ++ L+ N L L+ LE K + Sbjct: 244 KKLKDGVKE----AEHSQYLAKIVVDVPVDIDFKNCQLKGFNLSILEPLLQKLELNKFLK 299 Query: 287 RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346 ++ ++PV D T++ +D Q S +Q +S Sbjct: 300 QINHLQQKFGGEVKPV--DQATSQ--------PLDH-----PQQLSLFPEQNLPAHS--- 341 Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNT-KDIQQWVQKLETIGSASFKIITDT----MDA 401 + L ++ + ++S PI KI+ T D+ + KLE + + DT ++ Sbjct: 342 VEPLVIKTIPEVS--PIT----PKIITTLDDLNHLINKLEQYTDVEYPVAWDTETTSLEP 395 Query: 402 FHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENE 460 +++ + I ++ D ++ + T + N L KE +L LK E++ Sbjct: 396 RNAELVGIGCCWGEKSTDIAY----------IPTGHNKG--NQLKKEAVLQALKPILESD 443 Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519 + K+ N K+D+L+ + GI+++G D +L SYVL SH+++ + ++LS + Sbjct: 444 RYPKVFQNTKFDRLIFYHQGINLKGVVFDTLLASYVLHP-EMSHNLSDLCYRYLSGITSQ 502 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--------IVEKLLHVYER 571 K + +IP K S E + LL KL +EKLL Sbjct: 503 SYK--ELAIPKGKTIASLDIETVANYCGLDAYATFLLVSKLKQELKSFPSLEKLLL---E 557 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 +++P+ V++ ME GI+ID D L+Q+S ++ ++L +E+ Y +GE FNL SPKQLG+ Sbjct: 558 VEQPLEPVLAAMEDIGIRIDTDYLQQLSQQLEQDLHIIEQQAYQEAGEIFNLGSPKQLGE 617 Query: 632 ILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689 ILF KL+ KTKTG + T LE++ GD+PII +IL++R LSK+KSTY D+LP Sbjct: 618 ILFEKLELNRKKSRKTKTG-YSTDHATLEKLQ-GDHPIIDHILDYRTLSKLKSTYVDALP 675 Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 + TQRVHT ++ T TGRL+S PNLQNIPI+T+ +KIR+AFI L+SAD Sbjct: 676 ALVRPDTQRVHTNFNQTVTATGRLSSSNPNLQNIPIRTEFSRKIRQAFIPQENWLLVSAD 735 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELRILAH+++ L + + N+ D+H + A +F + E ++PQ R KTINF +I Sbjct: 736 YSQIELRILAHLSQEVVLLEAYRNNQDVHSVTAKLLF--DKETITPQERNLGKTINFGVI 793 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YG+ R A + + +E +I +Y R+ + +Y+E+ K +G+V TI GRR ++ Sbjct: 794 YGMGAQRFAREAGVSAAEGKTFINKYRQRYAKVFDYLERMKKEAIADGFVTTILGRRRYF 853 Query: 870 DEINSPKSSIR------------NINE------RAAINAPIQGSAADITRRAMISVHKSL 911 + I ++ NIN RAA NAPIQGS+ADI + AMI + + L Sbjct: 854 NFITESLQKLKGSDPEKINLEVLNINYADAQLLRAAANAPIQGSSADIIKIAMIKMQEIL 913 Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 ++ ++LLQ+HDELVFE+P E I +ME A + L VPL V I NN Sbjct: 914 SHYQ--ARLLLQVHDELVFEIPLNEWEELQTKIKETMENA----VTLTVPLVVEIHSGNN 967 Query: 972 WQE 974 W E Sbjct: 968 WME 970 >gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi] gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi] Length = 909 Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust. Identities = 337/979 (34%), Positives = 506/979 (51%), Gaps = 86/979 (8%) Query: 7 LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H + Sbjct: 4 LYLIDALNIIFRNYHVLKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLII 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR + YP+YKA R P L+PQ+ ++ IP EI G+EADDI+A+ Sbjct: 58 AFDSEMPTFRKQKYPNYKATRDAPPNDLIPQIGWIKEGLLKAKIPIFEIDGYEADDILAS 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMVC 181 + AEK G+ IIS DKDL+Q +S + I++ E+VIKK+GI ++ Sbjct: 118 FAKKAEKNGYLTYIISPDKDLLQTMSEYIKILKIENNSFIEMNNEYVIKKFGINSFQIKD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK +E +++ E A Sbjct: 178 YLAIVGDRSDNIPGIKGIGSKGAANLLREFKTLKGIYSNLELI-NKKHQEILIKEKENAF 236 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LS LV L ++ I +E+ L++ N +IS + LI TY D Sbjct: 237 LSYDLVSLEENLQIP-EIENFYLKNFN-EEIISLFEKHSAVALI----KTYKKDILK--- 287 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 EN G SL +Q S S L L+ Sbjct: 288 -----KKEENLGQ-----------------KSLFEQESITKS-----------LNALNTI 314 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 N Y I K++ ++ L+ S T ++D + +K I I+IS Sbjct: 315 DTENVKYYSITTKKELDNLIEGLKQANYISIDTETSSLDTYTAKLIGISIS--------- 365 Query: 422 FK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 FK E +I + ++ GK + K I+ F++ + IG N K+D +L Sbjct: 366 FKEFEGYYIPI------ETKGKIYIEKHYIIQKFNNLFKSNPKI-IGQNYKFDYKILKNN 418 Query: 480 GIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538 G S + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 419 GFSPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMA 477 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++ E++++ +L+ + KL ++L + ++ P +V+ +ME GI +D++ LK+ Sbjct: 478 TSYSCEDADITFRLFNIFTEKLKEDELYELMHEIEMPFNNVIIEMEENGIYLDKEYLKEY 537 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQD 656 E+ K L +E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 538 GKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESL 597 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 EQ + I N+++ R+++K+KSTY D+L IN +T R+HT + T TGR+ S+ Sbjct: 598 REQ-----HESIGNLIKHRRIAKLKSTYTDNLIELINYKTNRLHTSFIQTRTATGRITSI 652 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ D Sbjct: 653 NPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDETLIKAFENNKD 712 Query: 777 IHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 IH A+++F + EK++P +RR AK+INF IIY +S FRLA +L I + EA +I Y Sbjct: 713 IHIETASKLFKIEEKEKITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 772 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I E+I NFV+ GY ETI RR + EINS R+ ER AIN+ IQGS Sbjct: 773 FDSYPKIKEFIINQINFVKNTGYSETILKRRRYIKEINSNNYLERSAAERIAINSTIQGS 832 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD + AMI V ++ K+ +K+LLQ+HDE++ E P +E +I+ ME A Sbjct: 833 AADYMKIAMIKVFNEFKNKKMESKILLQVHDEMLIESPIKEENEVKKILKIMMETAY--- 889 Query: 956 INLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 890 -TLNLPLRANIETGKSWGE 907 >gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563] gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563] Length = 926 Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust. Identities = 322/982 (32%), Positives = 513/982 (52%), Gaps = 76/982 (7%) Query: 7 LFLVDGSSFIYR---AFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 ++D +YR F PLL+ K G V++I GF + L+ A + A+ Sbjct: 5 FLIIDAFGILYRYHFIFLKRPLLNSK--GQNVSSINGFMRTYFSLINTYP----AEYTAI 58 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 D TFRNEIY +YK NR +P+ L Q+P++ A GI I + +EADDI+ T Sbjct: 59 ALDSSRKTFRNEIYKEYKENRESMPDDLRSQIPILYNLIDALGISRIVLDNYEADDIVGT 118 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIPPEKMV 180 +KE I S DKD++QLV + + K+ ++ D E V +K G+ P +++ Sbjct: 119 IAEKNKKENIKTIIYSPDKDILQLVCDDVRVVASNKDNELMEYDEETVKEKRGVYPNQII 178 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L AL GD+ DNIPG+ G+G KTA LL+EY +L+ I N IK K +E ++E + A Sbjct: 179 DLLALMGDASDNIPGVKGVGEKTALKLLEEYKSLDGIYENIDSIKGK-VQEKLIESKDMA 237 Query: 241 RLSRKLVMLRTDVP-ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 +S KL + ++ + + N + L LE ++ +++ + ++ Sbjct: 238 YMSYKLATIEKNIKDFNLDYNEIAKNKINIEEVNKILDELELKQIRDKINSYIYGVSSKK 297 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 E V +N T++ SS S++ + E++P + + K S Sbjct: 298 EEKVKILNNTDD--------------------SSKSEENKEDKKEESP--ILSAKDNKAS 335 Query: 360 QYPINNDSYTK-IVNTKDIQQWVQ-KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 Y I N++ K ++N + ++ V ET G +D F I I+ + Sbjct: 336 YYLIENETELKNLLNDINSKKLVCVDFETTG----------LDVFKDTIIGISFAIRSN- 384 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 E ++D+S T+ D K+ + L K E IGHN+KY+ ++ Sbjct: 385 -------EAFYLDVSGRTNID---KDKCIDMVFETLAK----EDIKVIGHNLKYEYKMMR 430 Query: 478 RYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 S + D M+ +Y+++ R +++ +A +LSY +I + K ++ + Sbjct: 431 AINKSFGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYSDITDNAKKTLLDVPL 490 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 D V E+A E++++ + + P L L ++ ++ P++ V++ ME G+ I + Sbjct: 491 KD--VVEYACEDADITFRFYECFAPLLKTHNLEELFFNIEMPLVSVLADMEFDGVYISSE 548 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 +K +S E S L ++ IY +GE+FN+ SPKQL ILF K+ P KTKTG + T Sbjct: 549 KMKALSDEYSSLLEKTKKKIYAEAGEEFNIQSPKQLEYILFDKMGIPPTKKTKTG-FSTD 607 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + L +++ I + +L +R+ +K+K+TY D P IN++T R+H ++ T TGRL Sbjct: 608 EEVLTELS-QKYKIAEYMLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGRL 666 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S EPNLQNIP++ + G++IR FI+ LI+ADYSQIELR+LAH + L + F+N Sbjct: 667 SSSEPNLQNIPVRGEEGREIRNTFIAEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKN 726 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 + DIHR A +I+ V+ E V+ MR AK INFSIIYG + F L+ +L I R EA D+IK Sbjct: 727 NDDIHRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKRKEAEDFIK 786 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR-RIHYDEINSPKSSIRNINERAAINAPI 892 YF + + + E+ VR GYV T+ GR R INS + RN ER A+N I Sbjct: 787 GYFSTYSRVKPFCEEVVEEVRNKGYVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLI 846 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAAD+ + AM+++HK ++H K+++Q+HDELV EV E+E A I+ ME + Sbjct: 847 QGSAADMIKVAMVAIHKEFKNHFKTAKIVMQVHDELVVEVSEKEADKAMTIMKEIMEHS- 905 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + VP+ V+I N+W E Sbjct: 906 ---VKTNVPITVDIHKGNSWGE 924 >gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA] gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA] Length = 909 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 322/980 (32%), Positives = 510/980 (52%), Gaps = 89/980 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DGS+F++RA+++T + +G P A+ G N + K LQ +E+ +IF Sbjct: 5 LILMDGSAFLFRAYFSTLKQNLTNQNGFPTGAMFGVINAM-KSLQRKYQEA---RIIIIF 60 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D FR+ IYP YKANR I L+ Q+ + QA GI I + EADD+IAT + Sbjct: 61 DARGKNFRHNIYPQYKANRKPIDGGLVVQIEPLYEMIQAMGIHFICVSKVEADDVIATLS 120 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A + I S DKDLMQLV T +K D + VI+K G+ PEK++ AL Sbjct: 121 CCANQNNIKTIIASGDKDLMQLVG-TNISQLNMKGVLHDRQSVIEKIGVAPEKILDFLAL 179 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAETARL 242 TGDS DNIPG+P +G KTA LQ Y ++ I NA +IK K K R+N + L Sbjct: 180 TGDSADNIPGVPSVGPKTAIKWLQIYSDILGIKENAMQIKGKVGEKLRDNF----DLLDL 235 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S +LV L+ DV +P IL+D E K I+++A Y Sbjct: 236 SYQLVKLKFDV--VLPCN--ILDD-------------EPVKNIDKLANLY---------- 268 Query: 303 VLDINTTENKGIAIE-TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 + G + ++D + +K + T NS ++ L+ SQ Sbjct: 269 -------QQYGFFMWLKQLDNVSVLKQKSIQVIGTDTGVNNS--------VDILKGYSQI 313 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 + + I NT V +L+ + + F + ++D ++ + L KD Sbjct: 314 LVLD---LDIFNT-----MVSRLKILKTFVFSLKATSLDYMNASIVGWVF--LIDKDSFY 363 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 V +ID K ++L+ LK E+ KIG N+KYD +L Y I Sbjct: 364 VPVNHDYID---------APKQLNFNDVLNQLKPILEDVSISKIGQNLKYDAHILSNYKI 414 Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537 ++G +D+++ SY L+S + H++ +++ +L+Y +IL K + ++++ Sbjct: 415 DLQGISDDVIVKSYCLNSVATRHNMNDLSEYYLNYQTINFVDILGKGKKQVTFNQVNVEI 474 Query: 538 VQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 + EN + L +L ++ +L+ +Y+ L+ P+I V+ ME G+++D ++L Sbjct: 475 ALLYVCENVIITSLLNHMLDEEIAQYPRLVKLYQNLELPLIKVLLCMERNGVELDVNILS 534 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK--LKFPSGAKTKTGQWKTTA 654 +I++ + ++ +++L+ FNL SPKQ+ ILF L KT G T Sbjct: 535 TQQLDITQQMEDIKNQVFELADNVFNLESPKQIQRILFESKGLGLIPLRKTPKGVPSTNE 594 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 + L+ + D+P++ IL +R L+K+ STY + LP I+ T R+HT Y+ T TGRL+ Sbjct: 595 EALKLL---DHPVVDLILSYRTLAKLNSTYLEVLPRKIDLNTHRLHTSYNQVVTATGRLS 651 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S PNLQNIPI ++ G IR AFI+ +ISADYSQIELRI+ ++K L + F N Sbjct: 652 SSNPNLQNIPIFSEQGSCIRGAFITGKGNVIISADYSQIELRIMTQLSKDQNLLEAFNND 711 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 D+H A+ +F + I++V+ + RR AK INF +IYG+S + LA Q+ + R++A Y+ Sbjct: 712 KDVHSETASTMFNIPIDEVTSEYRRRAKAINFGLIYGMSAYGLAKQIGVSRTKAKQYMDT 771 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF +P + Y++ K + GYVETI GRR++ +IN+ ++ R AINAP+QG Sbjct: 772 YFDNYPSVLYYMDNIKEIAKVQGYVETIMGRRLYLPQINAKNKMLQQHALRTAINAPMQG 831 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 S+ADI +++M V+ + +M++Q+HDELVFEV + S+ I M L Sbjct: 832 SSADIIKKSMFDVYTWIGQDNPDIRMIMQVHDELVFEVSASKADEFSRKIQALMSNTYL- 890 Query: 955 KINLRVPLKVNIKVSNNWQE 974 L +PLKV++ + N+W+E Sbjct: 891 ---LDIPLKVDVGIGNSWKE 907 >gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a] Length = 908 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 332/979 (33%), Positives = 503/979 (51%), Gaps = 85/979 (8%) Query: 6 HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H Sbjct: 3 ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPKHLI 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR + YP YKA R P+ L+PQ+ ++ IP E++G+EADD++A Sbjct: 57 ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180 ++ A K + IIS DKDL+Q +S + ++D E+V KK+G+ ++ Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK RE +++ E A Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDEIYSNLEII-NKKHRELLIKEKENA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +LV L ++ I +E+ L++ +IS + LI TY D E Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 EN +DQ S E T L ++ Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTNGL-----DDINT 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I ++ ++ L+ S T ++D + +K I I+IS Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E +I + ++ GK + K I+ FE+ + IG N K+D +L Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417 Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 G + + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ E++++ +L+ L KL +KL + ++ P V+ +ME GI +D++ LK+ Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655 E+ K L +E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 537 YGKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLES 596 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 EQ I+N++++RQ++K+KSTY D+L IN +T R+HT + T TGR+ S Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 + PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I Y Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I E+I NFVR GY ETI RR + EINS R+ ER AIN+ IQGS Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V + K+ +K+LLQ+HDE++ E P EE +I+ ME A Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888 Query: 956 INLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 889 -TLNLPLRANIETGKSWGE 906 >gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 1009 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 341/1044 (32%), Positives = 536/1044 (51%), Gaps = 129/1044 (12%) Query: 9 LVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 LVDG S +R++YA R G+P +A GF L +++ E + A+ Sbjct: 15 LVDGHSLAFRSYYAFAKSRDGGLRTSTGIPTSASFGFLKSLLEVMAAEEPE----YMAIA 70 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E YKA+R + PE + L ++ F + + G+EADD++ T Sbjct: 71 FDLGLPTFRHEADDTYKADRTETPEDFIIDLKNLQELLSYFHLSIVTAPGYEADDVLGTL 130 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLY------------DTVKEEKIDIEHVIKKW 172 A GF V I++ D+DL QLV+ + T + ++ E VI+K Sbjct: 131 AQRASLAGFCVKILTGDQDLFQLVNTDANISVLRLGRDSFGRGGTGRGQEYGPEQVIEKL 190 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 GI P+++V +AL GD+ DNIPG+ GIG KTA LL Y +L+ I + ++K R++ Sbjct: 191 GIRPDQVVDYKALCGDASDNIPGVRGIGEKTAVQLLTTYNSLDRIYASLDQVKGAVRKK- 249 Query: 233 ILEYAET-ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA-- 289 LE +T A S+ L + DVP+ I LE L + LI L+ LEF +N+V Sbjct: 250 -LEDGKTEAYHSQHLAKIICDVPLEIELEECKLAGFDEAALIPVLEKLEFKTFLNKVKQL 308 Query: 290 ---------TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS----D 336 + + + IE V D TT I+TEI D K + SLS D Sbjct: 309 QKRFGGVEQSGEEASSRKIEEVDQDNRTT------IKTEISEDRVSKENSDRSLSNNEDD 362 Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNT-KDIQQWVQKLETIGSASFKII 395 + N E T + Q+ + PI +I++T + + + VQ L T ++ + Sbjct: 363 ASWFWNLEDTREA------QQQAILPIK----PRIIHTPEQLTELVQLLRTFTDSATPVA 412 Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF----IDLSVHTSQDSTGKNTLTKEILS 451 DT + L+ +D + + DL+ + TG+N +L Sbjct: 413 WDT-----------ETTALEPRDAELVGIGCCWGTGEADLAYIPTGHKTGQNLDKAIVLE 461 Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510 L+ E+ ++ K N K+D+L+L GI + G D ML SYV+D SH++ ++ + Sbjct: 462 ALRPILEDNNYPKALQNAKFDRLILRCQGIKLAGVVFDTMLASYVIDP-EGSHNLTALCK 520 Query: 511 KWL------SYTRKEILKSRKS----SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 ++L + + K+++ ++ +IPI V + + QL LR KL Sbjct: 521 EYLEDPKLTAKSYKDLVSKEQTIADLAIPI-------VANYCGMDVYTTFQLVSKLREKL 573 Query: 561 --------IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612 + L + ++++P+ V++QME GI+I+ + L ++S E+ L +E+ Sbjct: 574 EELDAEKPLTASLEQLLIKVEQPLEPVLAQMEYKGIRINTEYLNELSQELENKLQLIEQT 633 Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670 Y+++GE+F+LSSPKQL +LF LK + ++G + T A LE++ D+ ++K Sbjct: 634 AYEVAGEEFSLSSPKQLSKLLFETLKLDIKKSRRIQSG-YSTDAAVLEKLQ-DDHEVVKT 691 Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730 ILE R LSK+KSTY D+LP + T RVHT ++ A+T TGRL+S PNLQNIPI+T+ Sbjct: 692 ILEHRTLSKLKSTYVDALPQLVRPDTGRVHTDFNQAATGTGRLSSSNPNLQNIPIRTEFS 751 Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790 ++IR+AF+ ++SADYSQIELRILAH+ + L + ++ + D+H + A +F Sbjct: 752 RQIRKAFLPKEGWLMVSADYSQIELRILAHLTQEPVLVEAYKTNQDVHTVTAKLLF--EK 809 Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLR-IPRSEAADYIKRYFHRFPGIHEYIEKT 849 E V+P RR KTINF +IYG+ R A + + ++A +I+R+ R+ + EY+ + Sbjct: 810 ETVTPDERRLGKTINFGVIYGMGAQRFARSVEGVSPTQAKLFIERFNQRYSRVFEYLNRV 869 Query: 850 KNFVRQNGYVETIFGRRIHY----DEINSPKSS---------IRNINE------RAAINA 890 K GYV TI GRR ++ + + K S ++NI + RAA NA Sbjct: 870 KKDAIAQGYVSTILGRRRYFKFEGESVRKLKDSDVQDINLATLKNIGQNDAQLLRAAANA 929 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGS+ADI + AM+ +H L+D + ++LLQ+HDELV EVP +E I ++ME Sbjct: 930 PIQGSSADIIKVAMVKLHDILKDRQ--ARLLLQVHDELVLEVPPDEWEELQHKIKNTMEN 987 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A + L VPL V+I NW E Sbjct: 988 A----VELSVPLVVDIHAGQNWME 1007 >gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942] gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942] Length = 953 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 327/1022 (31%), Positives = 512/1022 (50%), Gaps = 132/1022 (12%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L LVDG S +R++YA R G+P + GF L ++++ + +++A Sbjct: 8 LLLVDGHSLAFRSYYAFAKGRDGGLRTRTGIPTSVCFGFLKALLEVMEQQQPKALA---- 63 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR+E +YKANR + PE + Q +P + G+EADD++ Sbjct: 64 IAFDLGGPTFRHEADENYKANRDEAPEDFKIDTDNLVALLQTLNLPILVEPGYEADDLLG 123 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTC---LY---------DTVKEEKIDIEHVIK 170 T + G+ V I+S D+DL QLV P LY + +ID VI Sbjct: 124 TVAQRGAEAGYRVRILSGDRDLFQLVDPEGAIRVLYLGNTFGRSANREAAREIDPAAVID 183 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K G+PPE+++ +AL GDS DNIPG+ GIG KTA LLQ +G+L+ I N IK R+ Sbjct: 184 KLGVPPEQVIDFKALCGDSSDNIPGVKGIGPKTAVDLLQAWGDLDRIYDNLEAIKPAVRK 243 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE---FTKLINR 287 + + E A SRKL + TD+P+ I +H L + ++ +L+ LE F + ++R Sbjct: 244 K-LESDREAAYHSRKLAQIVTDIPLAIDWDHYALTGFDEQEVLPWLEKLELQAFRRQVDR 302 Query: 288 VATTYDCDAANIEPVV---LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344 + + +E + LD T E +T + ++ L Q + Sbjct: 303 LQQLFGGQPPTVEALSDESLDFWTAE------------ETAAQQPRWPQLQPQIITTAAA 350 Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIV----NTKDIQQWVQKLETIGSASFKIITDTMD 400 T LE+ DS IV T D+ + +L IG A Sbjct: 351 LTDLVTLLEQ----------RDSPEAIVAWDTETTDLDPRLAQLVGIGCA---------- 390 Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460 + +P +A L ++ ++T+ L+ L+ E++ Sbjct: 391 -WGEEPDQLAYIPLGHEEGEQLPLQTV----------------------LTALRPILESD 427 Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519 K N K+D+L+L GI + G D ML SY+L+ H + ++A +WL Sbjct: 428 RHPKALQNAKFDRLILRHQGIELAGVVFDTMLASYLLNPSLG-HSLDALADRWLK----- 481 Query: 520 ILKSRKSS--IPIDKISDSQVQE----HAIENSNVILQLWLLLRPKLIVEKLLH-VYERL 572 L++R S +P K + + +V+ +L LL+ + L + E + Sbjct: 482 -LQTRSYSDLVPKGKTIAQVAIAAVAQYCGSDVHVVQRLIPLLKAGIAESPALQFLLETV 540 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 + P+ V+++ME GI+ID+ L ++S + L LE + L+G++FNL SPKQL ++ Sbjct: 541 ELPLEAVLAEMEDRGIRIDEGYLAELSEHLKGELDRLEGAAHTLAGDRFNLGSPKQLSEL 600 Query: 633 LFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 LF KL KTKTG + T A LE++ GD+PII ILE R L+K+KSTY D+LP+ Sbjct: 601 LFEKLGLNVKKSRKTKTG-YSTDAAVLEKLQ-GDHPIIDLILEHRTLAKLKSTYVDALPS 658 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750 + R+HT ++ A T TGRL+S PNLQNIPI+T+ ++IR+AF+ L +ADY Sbjct: 659 LVAA-DGRIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRKAFLPREGWLLAAADY 717 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELRILAH+++ L + + D+HR+ A+ +F + E+++ + RR K INF +IY Sbjct: 718 SQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLF--DREEITSEERRIGKIINFGVIY 775 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 G+ R A + EA +I R++ R+P + Y++ + GYVET+ GRR ++D Sbjct: 776 GMGAQRFARETGSSTKEAQGFIDRFYDRYPRVFTYLQSLERQAIARGYVETVLGRRRYFD 835 Query: 871 EINSPKSSIRNINE------------------RAAINAPIQGSAADITRRAMISVHKSLE 912 ++ +R + RAA NAPIQGS+ADI + AM+ + L+ Sbjct: 836 FEDTGLQKLRGSDPESIDLDKIRPSRFEAQLLRAAANAPIQGSSADIIKVAMVQLQALLQ 895 Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ +MLLQ+HDELV E+P EE + + I +ME+A + L VPL V + +NW Sbjct: 896 SYQ--ARMLLQVHDELVLELPPEEWDSLAPQIQQTMEQA----VQLTVPLAVELHAGHNW 949 Query: 973 QE 974 E Sbjct: 950 ME 951 >gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC3046] Length = 976 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 322/1022 (31%), Positives = 529/1022 (51%), Gaps = 114/1022 (11%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L LVDG S +R+FYA L+ K DG P + GF L +N E + Sbjct: 13 LLLVDGHSLAFRSFYAFSKGIDGGLTTK-DGFPTSVTYGFLKSLLDNCKNISPEGVC--- 68 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEADDI 120 + FD TFR+E+ P+YKANR P++ + + + ++ +P + GFEADD+ Sbjct: 69 -ITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGFEADDL 127 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHVIK 170 + T A +G+ V I+S D+DL QLV +Y + ++ V + Sbjct: 128 LGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNENGVKE 187 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K G+ PE++V L+ALTGD+ DNIPGI G+G KTA LL+E L+ I +I+Q + Sbjct: 188 KLGVAPERVVDLKALTGDNSDNIPGIKGVGPKTAINLLKENDTLDGIYQALDKIQQNNDK 247 Query: 231 -----------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279 E + A LSR L + T+VP+ + L++ N L LK L Sbjct: 248 KYKGFIKGSVIEKLRNDKHNAFLSRDLAKINTEVPLILS-NGYELKNINQELLSESLKKL 306 Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339 E + L+ ++ N+T +KG D++ K Sbjct: 307 ELSTLLRQIDI---------------FNSTFSKG-----GFDKNNVAK------------ 334 Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS-ASFKIITDT 398 E+ P+ L+ S+ I + T + + + + + +Q+L+ S T++ Sbjct: 335 --EEEKAPKVAGNNELEN-SENKIPKINVTVVNDFELLDKLIQRLDKTNQIVSLDTETNS 391 Query: 399 MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE 458 ++ +++ + I + ++ DD +I L H ++ T +++ S L+ + E Sbjct: 392 LNPINAELVGIGLCLGEENDDL------FYIPLG-HQTKKGTSNQLSIEDVFSKLRNWIE 444 Query: 459 NEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517 + K N K+D+ + +G+ ++G D +L Y+L++ + H ++ I+ + + Sbjct: 445 DPKKEKALQNSKFDRQIFFNHGLDLKGVTFDTLLADYLLNN-QEKHGLSEISFRLFGFKP 503 Query: 518 ---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHVYERL 572 KE + K +D I ++ + + + + ++ + + EK L+ ++E + Sbjct: 504 PLFKETVGKNKDFSFVD-IDEASI--YCGYDVFLTFKIVKIFKESFSKEKDELIKLFEEI 560 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 + P+ V+SQME+ GI ID L ++S E+ L +E +Y+L+GE FNLSSPKQLG+I Sbjct: 561 ELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAGENFNLSSPKQLGEI 620 Query: 633 LFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 LF KL KTKTG W T A LE++ ++ II+++++ R LSK+ STY D+LPN Sbjct: 621 LFDKLNLDKKKSRKTKTG-WSTDAVVLERL-VDEHEIIQHLIKHRTLSKLLSTYIDALPN 678 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750 IN++T RVHT ++ A+T TGRL+S PNLQNIP++T+ ++IR+AF+ KL+SADY Sbjct: 679 LINEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSADY 738 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELRILAH+A L F + DIH + A IF E++S + RR KTINF +IY Sbjct: 739 SQIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSEERRVGKTINFGVIY 796 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY- 869 G+ + A + EA +++ +Y R+ I +++E + GYV+TIFGR+ + Sbjct: 797 GMGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFK 856 Query: 870 -----------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912 D ++ ++ + + RAA NAPIQGS+ADI + AM+ ++K Sbjct: 857 FDKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFI 916 Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + + KMLLQ+HDEL+FEV + + ++++ +ME + L VPL V+I + +NW Sbjct: 917 EMNIPAKMLLQVHDELLFEVEPDSLEITTKLVKKTMEDC----VKLNVPLLVDIGIGDNW 972 Query: 973 QE 974 E Sbjct: 973 ME 974 >gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] Length = 908 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 331/979 (33%), Positives = 504/979 (51%), Gaps = 85/979 (8%) Query: 6 HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H Sbjct: 3 ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR + YP YKA R P+ L+PQ+ ++ IP E++G+EADD++A Sbjct: 57 ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMV 180 ++ A K + IIS DKDL+Q +S + I++ E+V KK+G+ ++ Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMGNEYVTKKFGVNSFQIK 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK RE +++ E A Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +LV L ++ I +E+ L++ +IS + LI TY D E Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAITLI----KTYKKDILKQE 289 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 EN +DQ S E T L ++ Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----NLDDINT 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I ++ ++ L+ S T ++D + +K I I+IS Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E +I + ++ GK + K I+ FE+ + IG N K+D +L Sbjct: 366 -FKEFEGCYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417 Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 G + + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ E++++ +L+ L KL +KL + ++ P V+ +ME GI +D++ LK+ Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDRLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655 E+ K L +E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 537 YGKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 EQ + I+N++++RQ++K+KSTY D+L IN +T R+HT + T TGR+ S Sbjct: 597 LREQ-----HESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 + PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I Y Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I E+I NFV+ GY ETI RR + EINS R+ ER AIN+ IQGS Sbjct: 772 FDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V + K+ +K+LLQ+HDE++ E P EE +I+ ME A Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888 Query: 956 INLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 889 -TLNLPLRANIETGKSWGE 906 >gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116] gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116] Length = 907 Score = 452 bits (1164), Expect = e-125, Method: Compositional matrix adjust. Identities = 333/978 (34%), Positives = 508/978 (51%), Gaps = 86/978 (8%) Query: 7 LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H + Sbjct: 4 LYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLII 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR + YP+YKA R P L+PQ+ ++ IP EI+G+EADD++A+ Sbjct: 58 AFDSEIPTFRKQKYPNYKATRDAPPNDLIPQIGWIKEGLLKAKIPIFEIEGYEADDLLAS 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMVC 181 + A K + IIS DKDL+Q +S + I++ E+VIKK+GI ++ Sbjct: 118 FAKKAVKNNYLTYIISPDKDLLQTMSEHIKILKIENNSFIEMNNEYVIKKFGINSFQIKD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK +E ++ E A Sbjct: 178 YLAIVGDRSDNIPGIKGIGPKGAANLLREFKTLKGIYSNLELI-NKKHQEILIREKENAF 236 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LS LV L ++ I +E+ L++ +IS + LI TY D E Sbjct: 237 LSYDLVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAISLI----KTYKKDILKQE- 289 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 +++ SL Q S I+S L L+ Sbjct: 290 -------------------------ESADQKSLFKQESTISS-----------LDNLNTI 313 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 N Y I K++ ++KL+ S T ++D + +K I I+IS Sbjct: 314 DTENVKYHPITTKKELDSLMEKLKKAKYISIDTETSSLDTYTAKLIGISIS--------- 364 Query: 422 FK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 FK E +I + ++ GK + K I+ F+++ + IG N K+D +L Sbjct: 365 FKEFEGYYIPI------EAKGKVYIEKHYIIQKFNNLFKSKPKI-IGQNYKFDYKILKNN 417 Query: 480 GIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538 G + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 418 GFDPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFAHISLEMA 476 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++ E++++ +L+ + KL + L + ++ P V+ +ME GI +D++ LK+ Sbjct: 477 TSYSSEDADITFRLFNVFNEKLKEDGLDKLMYEIEMPFNRVIIEMEENGIYLDKEYLKEY 536 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQD 656 E+ K L +E I G FNL+SPKQ+ ++LF +L K P K + K Sbjct: 537 GKELGKELELIENEIIKSIGIDFNLNSPKQMHEVLFERLNLKLPDRMKKDSTDIKV---- 592 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + G + I+N+++ RQ++K+KSTY D+L IN +T R+HT + T TGR+ S+ Sbjct: 593 LESLK-GQHESIENLIKHRQIAKLKSTYTDNLTELINYKTNRLHTNFIQTKTATGRITSI 651 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ D Sbjct: 652 NPNLQNIPIKEEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKD 711 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I YF Sbjct: 712 IHAETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYF 771 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 +P I E+I NFVR GY ETI RR + EINS R+ ER AIN+ IQGSA Sbjct: 772 DSYPKIKEFITNQINFVRNTGYSETISKRRRYIKEINSNNYLERSAAERIAINSIIQGSA 831 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI V + K+ +K+LLQ+HDE++ E P EE +I+ + ME A Sbjct: 832 ADIMKIAMIKVFNEFKSKKMKSKILLQVHDEMLIESPIEEENETKKILKNMMETAY---- 887 Query: 957 NLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 888 TLSLPLRANIETGKSWGE 905 >gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198] gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198] Length = 904 Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust. Identities = 320/995 (32%), Positives = 519/995 (52%), Gaps = 115/995 (11%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 MQK + LVD F++R+F+A P L R +G P + GF +L K ++ I Sbjct: 2 MQK---IILVDTFGFLFRSFFALPPL-RDKEGFPTGLLQGFGALLLKF-----QKEIGLQ 52 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 + FR +YP YK+ R +IP+ L QLP+V + + ++ I+G+EADD+ Sbjct: 53 NVIFALEGGKNFRKTLYPKYKSTRQEIPQDLALQLPIVMEWIKRMKLTSVSIEGYEADDV 112 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IAT + +A K+G+ V I S DKDL QL++ CL+D +K+ I E ++K+G+ P++ + Sbjct: 113 IATLSNLAVKKGYEVEIYSHDKDLYQLINEGICLFDPIKKIPIKAEQCLEKYGVHPQQFI 172 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYA 237 Q+L GDS+DN+PGIP IG KTA L+ +G+LE I ++ KK ILE+ Sbjct: 173 DFQSLVGDSVDNVPGIPSIGPKTAQKLIHHFGSLEEIYARTEELEGVVSKKIASKILEHK 232 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LSRKLV LR DV LED SF +LE Sbjct: 233 EEAYLSRKLVSLRKDV----------LED------FSFGSSLE----------------- 259 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ-TPQKLFLERLQ 356 N +AI ++++ K Q + K+ + Q TP+K+ + + Sbjct: 260 ----------GGSNPMLAIASDLEEYQLYKILQ------RLKKLPTTQGTPKKIRAKGIG 303 Query: 357 KLSQYPINNDSYTKI----VNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 + P + I +++ + + + ++ T+ +DA ++ + Sbjct: 304 GVDYSPQKKSEFHCIPHLITEERELFALLDSIPSDALIAYDCETNGLDALQARLVGF--- 360 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQD--STGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 SF + I V S D GK TK+ ++K F + +GHN+K Sbjct: 361 --------SFCFDGIH-GYYVPISHDYLGVGKQVDTKDAKRAIEKIFSHP---IVGHNLK 408 Query: 471 YDKLVLHRYGISM---RGFEDIMLMSYVLDSGRS-SHDIAS---IAQKWLSYTRKEILKS 523 +D L++ + ++ R +D ML++Y+LDS DI +K ++Y E++K Sbjct: 409 FD-LMIAKANFNLTPKREIQDSMLLAYLLDSASMMGLDILMEKFFGKKMIAYD--EVVKK 465 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE---RLDKPMIDVV 580 K+ +D + E+A E++ L L+ +L ++ H+ E L+ P I+V+ Sbjct: 466 GKTFGDVDL---ERASEYASEDAVACFCLQERLKEELQAKRCAHLLELAKDLEYPFIEVL 522 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 + ME GI+ID + + + +S+ L EE I+ + + FN++SPKQL +LF LK Sbjct: 523 ADMEYQGIKIDVEWFEALKESLSEALSQKEEEIFAHAKQNFNINSPKQLSRVLFDDLKL- 581 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 G + G + T + LE++ +PII ++E+R++ K+K+TYA+ + + + ++H Sbjct: 582 RGLRRVKGGYSTDEKTLEELK-DSHPIIPILMEYREIFKLKNTYAEPILK-LRTKENKIH 639 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T +S T TGRL+S PNLQNIP++T+ G++IRR FI+ KKLIS DYSQIELR+LAH Sbjct: 640 TSFSQTGTTTGRLSSRSPNLQNIPVRTEAGKQIRRGFIADAGKKLISVDYSQIELRLLAH 699 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH-AKTINFSIIYGISPFRLAT 819 ++ L F LDIH A +FG + + +RH AKTINF +IYG+ +L+ Sbjct: 700 FSQDQELLDAFRKDLDIHLRTAQMVFGEDAKN-----KRHIAKTINFGLIYGMGTRKLSQ 754 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L+I +EA +YI RYF FP + +++ + + + GY +T+ G R +++ + Sbjct: 755 TLKISNTEAKEYIDRYFASFPTVRQFLRTEEEQILRRGYAQTLLGHRRYFN-FKGVGDFM 813 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ R INA QGSAAD+ + +M ++++ ++ KMLLQ+HDEL+F+ PEEE Sbjct: 814 RSNFLREGINAIFQGSAADLMKLSMNKIYQTFQNS--GVKMLLQVHDELIFQSPEEEAED 871 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 A++ I + M LRVPL+ N+ + NW + Sbjct: 872 AAREIENIMNGV----YELRVPLRCNVAIGQNWAD 902 >gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ] gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ] Length = 908 Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust. Identities = 250/619 (40%), Positives = 369/619 (59%), Gaps = 29/619 (4%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y +++ + W+ KL+ G +F T ++DA ++ + ++ + +E Sbjct: 309 YETLLDRERFAAWLDKLKQAGLIAFDSETTSLDAQQAELVGLSFAVA--------PLEAA 360 Query: 428 FIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 +I L+ H+ + L ++ +L+ L+ E+ K+G + KYD VL YGI +RG Sbjct: 361 YIPLA-HSYMGV--PDQLDRDAVLAALRPILEDPARAKVGQHAKYDMNVLAHYGIEVRGV 417 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 D ML SYVLDS + HD+ S+A K+L ++I + D+I+ Q +A Sbjct: 418 AYDTMLESYVLDSTATRHDMDSLALKYLGQGTIRFEDIAGKGAKQLTFDQIALEQAGPYA 477 Query: 543 IENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E+++V L+L L KL + L V + ++ P++ V++++E G +D LL + S E Sbjct: 478 AEDADVTLRLHQCLWQKLEAIPALAKVLKEIEMPLVPVLARIERHGALVDAKLLGEQSLE 537 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + + L LE ++L+GE FNL+SPKQLG IL+ KL P +KT GQ T L + Sbjct: 538 LGEKLQQLEREAHELAGEPFNLASPKQLGAILYDKLGLPVLSKTAKGQPSTAESVLADLA 597 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 P+ + I+ R L+K+K TY D LP IN RT R+HT Y A T TGRL+S +PNLQ Sbjct: 598 EQGYPLPQVIMRHRSLNKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATGRLSSSDPNLQ 657 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+T G++IR+AF++P +L++ADYSQIELRI+AH+A+ T L F N LD+HR Sbjct: 658 NIPIRTTEGRRIRQAFVAPEGYRLVAADYSQIELRIMAHLAQDTSLLHAFRNDLDVHRAT 717 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV E VS RR AK INF +IYG+S F LA Q+ + R EA YI RYF R+PG Sbjct: 718 AAEVFGVAPEAVSADQRRSAKAINFGLIYGMSAFGLARQIGVERKEAQAYIDRYFARYPG 777 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ + GYVET+FGRR++ EI+S ++R ER AINAP+QGSAADI + Sbjct: 778 VLAYMERTRAQAAEQGYVETLFGRRLYLPEIHSKNGALRKAAERTAINAPMQGSAADIIK 837 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN---- 957 RAM++V L + L +M+LQ+HDELV EV E++ V +++ LP+++ Sbjct: 838 RAMVTVDAWLLESGLDARMILQVHDELVLEVREDQ--------VEALKAGLLPRMSGAAA 889 Query: 958 LRVPLKVNIKVSNNWQEEN 976 L VPL V V NW E + Sbjct: 890 LDVPLLVEAGVGGNWDEAH 908 Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 117/354 (33%), Positives = 181/354 (51%), Gaps = 28/354 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G P A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLATS-GGTPTGAVKGVLNMLLAL----RKQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ YK++RP +P+ L Q+ + +A G+P + ++G EADD+I T Sbjct: 61 AKGPTFRDELFEHYKSHRPPMPDDLRVQIEPLHACVRALGLPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + +G V I + DKD+ QLV L +T+ +D V +K+G+ PE ++ AL Sbjct: 121 GSALDGRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDHAGVAEKFGVGPELIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA LLQ Y NLE + R K + E+ E Sbjct: 181 GDKVDNIPGVPGVGEKTALGLLQGLGGGLDTIYANLERVATLPIR-GAKSLAAKLEEHRE 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++TDV + I ++ L + LI+ + LEF ++ + Sbjct: 240 MAYLSHRLATIKTDVALDIEIDALHPAAPDREALIALYRELEFKSWLDELLREAHAAGPT 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRD------TTIKTSQFSSLSDQTSKINSEQT 346 +P G ET +DR+ +K + + +T+ ++++Q Sbjct: 300 ADPAA--------PGTHYETLLDRERFAAWLDKLKQAGLIAFDSETTSLDAQQA 345 >gi|119494050|ref|ZP_01624605.1| DNA polymerase I [Lyngbya sp. PCC 8106] gi|119452218|gb|EAW33419.1| DNA polymerase I [Lyngbya sp. PCC 8106] Length = 927 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 323/961 (33%), Positives = 521/961 (54%), Gaps = 92/961 (9%) Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + A+ FD TFR+E YKANR + PE + + ++ + +P I G+EADD Sbjct: 11 YLAIAFDLGEPTFRHEADATYKANRSETPEDFIEDICHLQAVLEGLNVPIITAAGYEADD 70 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY----DTVKEEKIDIEHVIKKW 172 +I T + G+AV ++S D+DL QL+ + L+ K + I++V+ K Sbjct: 71 VIGTLAKQGREAGYAVKVLSGDQDLFQLIDGDEQISVLHLSPGKGNKTIEFKIQNVVDKL 130 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 I PE+++ +AL GD DNIPG+ GIG KTA LL EY +L+ I + +IK R++ Sbjct: 131 QIKPEQLIDYKALCGDKSDNIPGVRGIGDKTAVQLLSEYNSLDEIYASLDQIKAATRKK- 189 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 + + E A S+++ + DVP+ I + + ++I LK LEF + + Sbjct: 190 LEDGKEAAYHSQRMATIIQDVPLKISVADCQFSKLDFSQIIPKLKELEFWSFVEEAESQQ 249 Query: 293 DCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 + + + TE+K I E+ T + + +Q S + E+T Sbjct: 250 VFEETS--------SQTEDKTINSESVSSESETSDSEGLDN-DEQLSFWSYEET------ 294 Query: 353 ERLQKLSQYPINNDSYTKIVNT-KDIQQWVQKLETIGSASFKIITDT----MDAFHSKPI 407 + QK+++ + + +I+ T K +Q+ V+ LET + + DT ++ +K + Sbjct: 295 QAAQKVAEQKL---IHPEIIQTEKQLQELVKILETFTDKNNPVAWDTETTALEPRDAKLV 351 Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIG 466 I S K E +I L T N L KE +L L+ E+ + K Sbjct: 352 GIGCCW------GSEKTEIAYIPLEHKTG------NQLKKETVLEALRPILESNKYPKAL 399 Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEI 520 N K+D+L+ GI++ G D ML SYVL+ SH++ +++K+L + + K++ Sbjct: 400 QNAKFDRLIFKVQGINLAGVVFDTMLASYVLNPD-DSHNLTELSRKYLDSGILAKSYKQL 458 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-----KLLHVYERLDKP 575 S+K +I I A E + + L+ PKL E +L + +++P Sbjct: 459 SLSKKQTIADLDIPT------AAEYCGLDVYATYLIVPKLRKELQDFPELHKLLLDIEQP 512 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + V+++ME GI+I+ D LKQ+S+++ K L +E+ Y +G +FNL SPKQL +LF Sbjct: 513 LEPVLAEMEYQGIRINVDYLKQLSSQLEKKLEEIEKQAYQEAGTEFNLGSPKQLSKLLFE 572 Query: 636 KLKFPS--GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 L+ + KTKTG + T A+ LE++ GD+PII +ILE R L+K+KSTY D+LP ++ Sbjct: 573 TLELSTKKSRKTKTG-YSTDAKVLEKLK-GDHPIIDSILEHRTLAKLKSTYVDALPELVH 630 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753 +TQR+HT ++ A T TGRL+S PNLQNIPI+T+ ++IR+AF+ P L+SADYSQI Sbjct: 631 PQTQRIHTDFNQAITTTGRLSSSNPNLQNIPIRTEFSRQIRQAFLPEPGWLLVSADYSQI 690 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGI 812 ELRILAH++ L + ++ + DIH + A +F +I+ V+P+ RR KTINF +IYG+ Sbjct: 691 ELRILAHLSDEPILVEAYKTNRDIHTVTAQFLFEKDDIKDVTPEERRFGKTINFGVIYGM 750 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR--IHYD 870 R + ++++ ++A ++I+R+ ++ + EY+E+ K GYV T+ GRR H++ Sbjct: 751 GALRFSREMKVNTNKAKEFIERFNQQYEKLFEYLEEQKKQAISQGYVTTLLGRRRYFHFE 810 Query: 871 EI-----------NSPKSSIRNINE------RAAINAPIQGSAADITRRAMISVHKSLED 913 + P ++ I + RAA NAPIQGS+ADI + AM+ + L++ Sbjct: 811 SPSLKALKESPLEDIPLDELKKIGQNDAQFLRAAANAPIQGSSADIIKIAMVKLRDVLQN 870 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 ++ K+LLQ+HDELVFEVP EE I +ME A +L+VPL V+I +NW Sbjct: 871 YR--AKLLLQVHDELVFEVPPEEWEELQPQIKQTMEDA----YSLKVPLLVDIHAGDNWM 924 Query: 974 E 974 E Sbjct: 925 E 925 >gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1] gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1] Length = 908 Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust. Identities = 333/979 (34%), Positives = 504/979 (51%), Gaps = 85/979 (8%) Query: 6 HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H Sbjct: 3 ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR + YP+YKA R P+ L+PQ+ ++ IP E++G+EADD++A Sbjct: 57 ITFDSEVPTFRKQKYPNYKATRDSPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180 ++ A K + IIS DKDL+Q +S + ++D E+V KK+G+ ++ Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYIKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK RE +++ E A Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAASLLREFKTLDGIYSNLELI-NKKHRELLIKEKENA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +LV L ++ I +E+ L++ +IS + LI TY D E Sbjct: 236 LLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 EN +DQ S E T L ++ Sbjct: 290 K--------EN-----------------------ADQKSLFKQEATTN-----SLDDINT 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I ++ ++ L+ S T ++D + +K I I+IS Sbjct: 314 IDTENVKYHSITTKIELDDLIESLKKAKYTSIDTETSSLDTYTAKLIGISIS-------- 365 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E +I + ++ GK + K I+ FE+ + IG N K+D +L Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417 Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 G S + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 418 NGFSPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ E++++ +L+ L KL +KL + ++ P V+ +ME GI +D++ LK+ Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655 E+ K L +E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 537 YGKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 EQ I+N++++RQ++K+KSTY D+L IN +T R+HT + T TGR+ S Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 + PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNK 711 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I Y Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I E+I NFVR GY ETI RR + EINS R+ ER AIN+ IQGS Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V + K+ +K+LLQ+HDE++ E P EE +I+ ME A Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888 Query: 956 INLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 889 -TLNLPLRANIETGKSWGE 906 >gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] Length = 908 Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust. Identities = 333/979 (34%), Positives = 506/979 (51%), Gaps = 85/979 (8%) Query: 6 HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H Sbjct: 3 ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR + YP YKA R P+ L+PQ+ ++ IP E++G+EADD++A Sbjct: 57 ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180 ++ A K + IIS DKDL+Q +S + ++D E+V KK+G+ ++ Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK RE +++ E A Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +LV L ++ I +E+ L++ +IS + LI TY D E Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 EN +DQ S E T L ++ Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I ++ ++ L+ S T ++D + +K I I+IS Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E +I + ++ GK + K I+ FE+ + IG N K+D +L Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417 Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 G + + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ E++++ +L+ L KL +KL + ++ P V+ +ME GI +D++ LK+ Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655 E+ K L ++E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 EQ + I+N++++RQ++K+KSTY D+L IN +T R+HT + T TGR+ S Sbjct: 597 LREQ-----HESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 + PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+++F + ++++P +RR AK+INF IIY +S FRLA +LRI + EA +I Y Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELRITKEEAKGFINSY 771 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I E+I NFVR GY ETI RR + EINS R+ ER AIN+ IQGS Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V + K+ +K+LLQ+HDE++ E P EE +I+ ME A Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888 Query: 956 INLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 889 -TLNLPLRANIETGKSWGE 906 >gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16] gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16] Length = 938 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 249/624 (39%), Positives = 373/624 (59%), Gaps = 40/624 (6%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE-- 425 Y + ++ W++++E + T ++D ++ + I++S VE Sbjct: 336 YDTVSTEAQLEDWMRRIEAAPLVAIDTETTSLDPMQAQLVGISLS-----------VEPG 384 Query: 426 -TIFIDLSVHTSQDSTG---KNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 +I ++ H D G L++E +L ++ + E+ K+G N+KYD V +G Sbjct: 385 VACYIPVA-HRGPDVAGLPDHGQLSREFVLGRMRAWLEDASRPKLGQNLKYDVHVFANHG 443 Query: 481 ISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536 + +RG D ML SYVL S R+ H + S+A++ LS T +E+ S I D+I + Sbjct: 444 VKLRGVAHDTMLQSYVLASHRN-HGMDSLAERLLSLKTITYEEVCGKGASQIGFDQIDLA 502 Query: 537 QVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + E+A E+++V L+L + P++ L VYE ++ P+ V+ ++E G+ ID + L Sbjct: 503 RATEYAAEDADVTLRLHRKMFPQVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERL 562 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 SAE+ + +L+LE+ Y+ +G+ FNL SPKQ+G+ILF+++K P KT +G T + Sbjct: 563 AAQSAELGQRMLALEQAAYEAAGQPFNLGSPKQIGEILFSQMKLPVVKKTASGAPSTDEE 622 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 L+++ D P+ K +L++R L+K+KSTY D LP +N +T RVHT Y A+ +TGRLAS Sbjct: 623 VLQKL-AEDYPLPKLLLDYRGLAKLKSTYTDKLPKMVNPQTGRVHTSYGQATAVTGRLAS 681 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 EPNLQNIP++T+ G++IR AFI+ P ++SADYSQIELRI+AHI+ L + F N Sbjct: 682 TEPNLQNIPVRTEEGRRIREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLRAFANGE 741 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR A EIFGV E VS + RR+AK INF +IYG+S F LA L I R A YI RY Sbjct: 742 DIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIEREAAKHYIDRY 801 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PG+ Y+E+T+ R+ GYVET+FGRR+ +IN R ERAAINAP+QG+ Sbjct: 802 FMRYPGVAHYMEETRQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAINAPMQGT 861 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD+ + +MI+V LE L T+ ++Q+HDELV EVPE E+ + K LP+ Sbjct: 862 AADLIKLSMIAVQGWLERDGLQTRQIMQVHDELVLEVPEHEL---------ELVKVRLPE 912 Query: 956 I-----NLRVPLKVNIKVSNNWQE 974 + LRVPL + NW+E Sbjct: 913 LMCSVAQLRVPLVAEVGSGANWEE 936 Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 99/250 (39%), Positives = 153/250 (61%), Gaps = 6/250 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R +GLP AI G NML KL R + A + A +FD Sbjct: 8 LLLVDGSSYLYRAYHALPDL-RNGEGLPTGAIYGMINMLRKL----RNDYPAEYSACVFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++YP YK +RP +PE L Q+ + A +A G P + + G EADD+I T + Sbjct: 63 AKGKTFRDDMYPAYKEHRPSMPEDLARQIEPIHEAVRAMGWPIVVVDGVEADDVIGTLSR 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G + + DKDL QLV+ L +T+ E +D V+ K+G+PPE+++ +L Sbjct: 123 QATEQGVRTVVSTGDKDLAQLVNDQVTLVNTMSGEVLDPPGVVAKFGVPPERIIDYLSLI 182 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+P +G KTA L E+G+L+ ++ A IK EN+ + ++R+L Sbjct: 183 GDAVDNVPGVPKVGPKTAVKWLAEHGSLDGVIAAAPGIKGVV-GENLRNTLDWLPMARQL 241 Query: 247 VMLRTDVPIT 256 V ++TD ++ Sbjct: 242 VTVKTDCDLS 251 >gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] Length = 908 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 333/979 (34%), Positives = 506/979 (51%), Gaps = 85/979 (8%) Query: 6 HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H Sbjct: 3 ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR + YP YKA R P+ L+PQ+ ++ IP E++G+EADD++A Sbjct: 57 ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180 ++ A K + IIS DKDL+Q +S + ++D E+V KK+G+ ++ Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK RE +++ E A Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +LV L ++ I +E+ L++ +IS + LI TY D E Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 EN +DQ S E T L ++ Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I ++ ++ L+ S T ++D + +K I I+IS Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E +I + ++ GK + K I+ FE+ + IG N K+D +L Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417 Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 G + + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ E++++ +L+ L KL +KL + ++ P V+ +ME GI +D++ LK+ Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655 E+ K L ++E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 EQ + I+N++++RQ++K+KSTY D+L IN +T R+HT + T TGR+ S Sbjct: 597 LREQ-----HESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 + PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEILIKAFENNK 711 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+++F + ++++P +RR AK+INF IIY +S FRLA +LRI + EA +I Y Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELRITKEEAKGFINSY 771 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I E+I NFVR GY ETI RR + EINS R+ ER AIN+ IQGS Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V + K+ +K+LLQ+HDE++ E P EE +I+ ME A Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888 Query: 956 INLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 889 -TLNLPLRANIETGKSWGE 906 >gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr] gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr] Length = 908 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 332/978 (33%), Positives = 504/978 (51%), Gaps = 85/978 (8%) Query: 7 LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H + Sbjct: 4 LYLIDALNIIFRNYHVLKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLII 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR + YP+YKA R P L+PQ+ ++ IP EI+G+EADDI+A+ Sbjct: 58 AFDSEVPTFRKQKYPNYKATRDAPPNDLIPQIGWIKEGLLKAKIPIFEIEGYEADDILAS 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMVC 181 + AEK + IIS DKDL+Q +S + +++ E+VIKK+G+ ++ Sbjct: 118 FAKKAEKNNYLTYIISPDKDLLQTMSEYIKILKIENNSFVEMNNEYVIKKFGVNSFQIKD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK +E +++ E A Sbjct: 178 YLAIVGDRSDNIPGIKGIGSKGAANLLREFKTLKGIYSNLELI-NKKHQEILIKEKENAF 236 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LS LV L ++ I +E+ L++ +IS + LI TY D Sbjct: 237 LSYDLVSLEENLQIP-EIENFYLKNF-SEEIISLFEKHSAVALI----KTYKKDILK--- 287 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 EN G + S F EQ P + L L+ Sbjct: 288 -----QKEENLG-------------QKSLF------------EQEP---ITKSLNTLNTI 314 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 N Y I K++ ++ L+ S T ++D + +K I I+IS Sbjct: 315 DTENVKYHSITTKKELDNLIESLKQAKYISIDTETSSLDTYTAKLIGISIS--------- 365 Query: 422 FK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 FK E +I + ++ GK + K I+ F++ + IG N K+D +L Sbjct: 366 FKEFEGYYIPI------EAKGKFYIEKHYIIQKFNNLFKSNPKI-IGQNYKFDYKILKNN 418 Query: 480 GIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538 G S + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 419 GFSPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMA 477 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++ E++++ +L+ + KL + L + ++ P V+ +ME GI +D+ LK+ Sbjct: 478 TSYSCEDADITFRLFNIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEY 537 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQD 656 E+ K L +E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 538 GKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESL 597 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 EQ + I+N+++ R+++K+KSTY D+L IN +T R+HT + T TGR+ S+ Sbjct: 598 REQ-----HESIENLIKHRRIAKLKSTYTDNLIELINYKTNRLHTSFIQTRTATGRITSI 652 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ D Sbjct: 653 NPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKD 712 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I YF Sbjct: 713 IHIETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYF 772 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 +P I E+I NFV+ GY ETI RR + EINS R+ ER AIN+ IQGSA Sbjct: 773 DSYPKIKEFIINQINFVKNTGYSETILKRRRYIKEINSNNYLERSAAERIAINSAIQGSA 832 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI V + K+ +K+LLQ+HDE++ E P +E +I+ ME A Sbjct: 833 ADIMKIAMIKVFNEFKSKKMESKILLQVHDEMLIESPIKEENEVKKILKIMMETAY---- 888 Query: 957 NLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 889 TLNLPLRANIETGKSWGE 906 >gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S] gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S] Length = 908 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 330/978 (33%), Positives = 517/978 (52%), Gaps = 85/978 (8%) Query: 7 LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H + Sbjct: 4 LYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFVGFFKTLFFII----KEKNPKHLII 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR + YP+YKA R P+ L+PQ+ ++ IP EI+G+EADD++A+ Sbjct: 58 TFDSEIPTFRKQKYPNYKATRDAPPDDLIPQIGWIKKGLLKAKIPIFEIEGYEADDLLAS 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--DTVKEEKIDIEHVIKKWGIPPEKMVC 181 + A + + IIS DKDL+Q++S + + + ++D E+VIKK+GI ++ Sbjct: 118 FAKKATQNNYLTYIISPDKDLLQIMSEHIKILKIENNRFVEMDNEYVIKKFGINSFQIKD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK +E +++ E A Sbjct: 178 YLAIVGDRSDNIPGIKGIGPKGAANLLREFKTLKGIYSNLELI-TKKHQEILIKEKENAF 236 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LS LV L ++ I +E+ L++ +IS + LI TY D Sbjct: 237 LSYDLVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAITLI----KTYKRD------ 284 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 I E + +A ++ +++T K+ D + I++E Sbjct: 285 ----ILKQEEENLAQKSLFKQESTTKSI------DTLNTIDTE----------------- 317 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 N Y I K++ ++ L+ S T ++D + ++ I I+IS Sbjct: 318 ---NVKYHSITTKKELDNLIESLKKAKYISIDTETSSLDIYTARLIGISIS--------- 365 Query: 422 FK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 FK E +I + ++ GK + K I+ FFE+ + IG N K+D +L Sbjct: 366 FKEFEGYYIPI------EARGKIYIEKHYIIQKFNNFFESNPKI-IGQNYKFDYKILKNN 418 Query: 480 GIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538 G + + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 419 GFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFAGISLEMA 477 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++ E++++ +L+ + KL + L + ++ P +V+ +ME GI +D++ LK+ Sbjct: 478 TSYSSEDADITFRLFNVFSKKLKEDSLDKLMHEIEMPFNNVIIEMEENGIYLDREYLKEY 537 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQD 656 E+ K L +E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 538 GKELGKELELIETEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKV---- 593 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + G + I+N+++ RQ++K+KSTY D+L IN +T R+HT + T TGR+ S+ Sbjct: 594 LESLR-GQHESIENLIKHRQIAKLKSTYTDNLIELINYKTNRLHTNFIQTKTATGRVTSI 652 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ D Sbjct: 653 NPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKD 712 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I YF Sbjct: 713 IHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFIDSYF 772 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 +P I E+I NFVR GY ETI RR + EINS R+ ER +IN+ IQGSA Sbjct: 773 DSYPKIKEFIINQINFVRNTGYSETILKRRRYIKEINSNNYLERSAAERISINSIIQGSA 832 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AM+ V + K+ +K+LLQ+HDE++ E P +E +I+ ME A Sbjct: 833 ADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIKEENEVKKILKIMMETAY---- 888 Query: 957 NLRVPLKVNIKVSNNWQE 974 L PL+ NI+ +W E Sbjct: 889 TLTPPLRANIETGKSWGE 906 >gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] Length = 976 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 320/1024 (31%), Positives = 537/1024 (52%), Gaps = 118/1024 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIAS 59 L LVDG S +R+FYA S+ DG P + GF L +N E + Sbjct: 13 LLLVDGHSLAFRSFYA---FSKGIDGGLTTKEGFPTSVTYGFLKSLLDNCKNISPEGVC- 68 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEAD 118 + FD TFR+E+ P+YKANR P++ + + + ++ +P + G+EAD Sbjct: 69 ---ITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGYEAD 125 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHV 168 D++ T A +G+ V I+S D+DL QLV +Y + I+ V Sbjct: 126 DLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKGIYVLYMGGGPYAKSGNPTLINENGV 185 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILINA 221 +K G+ PE++V L+ALTGDS DNIPGI G+G KTA LL+E Y L+ IL N Sbjct: 186 KEKLGVVPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYQALDKILQNN 245 Query: 222 SRIKQKKRRENILEYAET----ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277 + + + +++E + A LSR L + T+VP+ + + L++ N L L+ Sbjct: 246 DKKYKGFIKGSVIEKLKNDKYNAYLSRDLAKINTEVPLILS-DGYELKNINQELLSESLQ 304 Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337 LE + L+ ++ N+T +KG D++ K + + Sbjct: 305 KLELSTLLRQIDI---------------FNSTFSKG-----GFDKNNVAKVDEKAPKVSS 344 Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS-ASFKIIT 396 +++++ + ++ K+S +NN + + +Q+LE S T Sbjct: 345 KNELDNREN-------KIPKISVTIVNNFEL--------LDKLIQRLEKTNEIVSLDTET 389 Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456 ++++ ++ + I + ++ DD +I L T +++T + ++ +E+ S ++ + Sbjct: 390 NSLNPIDAELVGIGLCLGEETDDL------FYIPLGHQTKKETTNQLSI-EEVFSKIRTW 442 Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515 E+ K N K+D+ + +G+ ++G D +L Y+L++ + H ++ I+ + + Sbjct: 443 IEDPKKEKALQNSKFDRQIFFNHGLDLKGVTFDTLLADYLLNN-QEKHGLSEISFRLFGF 501 Query: 516 ---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHVYE 570 + KE + K +D I ++ V + + + ++ + + + +EK L+ ++E Sbjct: 502 KPPSFKETVGKNKDFSFVD-IDEASV--YCGYDVFLTFKIVKIFKERFSMEKDELIKLFE 558 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 ++ P+ V+SQME+ GI ID L ++S E+ L +E +Y+L+ FNLSSPKQLG Sbjct: 559 EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAEGNFNLSSPKQLG 618 Query: 631 DILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 +ILF KL KTKTG W T A LE++ ++ II+ +++ R LSK+ STY D+L Sbjct: 619 EILFEKLNLDKKKSRKTKTG-WSTDAVVLERL-VDEHEIIQYLIKHRTLSKLLSTYIDAL 676 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748 PN IN++T RVHT ++ A+T TGRL+S PNLQNIP++T+ ++IR+AF+ KL+SA Sbjct: 677 PNLINEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSA 736 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELRILAH+A L F + DIH + A IF E++S RR KTINF + Sbjct: 737 DYSQIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGV 794 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 IYG+ + A + EA +++ +Y R+ I +++E + GYV+TIFGR+ Sbjct: 795 IYGMGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKRE 854 Query: 869 Y------------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910 + D ++ ++ + + RAA NAPIQGS+ADI + AM+ ++K Sbjct: 855 FKFDKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQINKK 914 Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970 + + KMLLQ+HDEL+FEV + + ++++ +ME + L VPL V+I + + Sbjct: 915 FIEMNVPAKMLLQVHDELLFEVEPDSLEITTKLVKKTMEDC----VKLNVPLLVDIGIGD 970 Query: 971 NWQE 974 NW E Sbjct: 971 NWME 974 >gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] Length = 908 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 333/978 (34%), Positives = 503/978 (51%), Gaps = 85/978 (8%) Query: 7 LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H + Sbjct: 4 LYLIDALNIIFRNYHVLKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLII 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR + YP+YKA R P L+PQ+ ++ IP EI+G+EADDI+A+ Sbjct: 58 AFDSEVPTFRKQKYPNYKATRDAPPNDLIPQIGWIKEGLLKAKIPIFEIEGYEADDILAS 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMVC 181 + AEK + IIS DKDL+Q +S + +++ E+VIKK+GI ++ Sbjct: 118 FAKKAEKNNYLTYIISPDKDLLQTMSEYIKILKIENNSFVEMNNEYVIKKFGINSFQIKD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK +E +++ E A Sbjct: 178 YLAIVGDRSDNIPGIKGIGSKGAANLLKEFKTLKGIYSNLELI-NKKHQEILIKEKENAF 236 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LS LV L ++ I +E+ L++ +IS + LI TY D Sbjct: 237 LSYDLVSLEENLQIP-EIENFHLKNF-SEEIISLFEKHSAVALI----KTYKKDILK--- 287 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 EN G + S F EQ P + L L+ Sbjct: 288 -----QKEENLG-------------QKSLF------------EQEP---ITKSLNTLNTI 314 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 N Y I K++ ++ L+ S T ++D + +K I I+IS Sbjct: 315 DTENVKYHSITTKKELDNLIESLKQAKYISIDTETSSLDTYTAKLIGISIS--------- 365 Query: 422 FK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 FK E +I + ++ GK + K I+ F++ + IG N K+D +L Sbjct: 366 FKEFEGYYIPI------EAKGKFYIEKHYIIQKFNNLFKSNPKI-IGQNYKFDYKILKNN 418 Query: 480 GIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538 G S + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 419 GFSPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMA 477 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++ E++++ +L+ + KL + L + ++ P V+ +ME GI +D+ LK+ Sbjct: 478 TSYSCEDADITFRLFNIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEY 537 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQD 656 E+ K L +E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 538 GKELGKELELIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESL 597 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 EQ + I+N+++ R+++K+KSTY D+L IN +T R+HT + T TGR+ S+ Sbjct: 598 REQ-----HESIENLIKHRRIAKLKSTYTDNLIELINYKTNRLHTSFIQTRTATGRITSI 652 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ D Sbjct: 653 NPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKD 712 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+++F ++++P +RR AK+INF IIY +S FRLA +L I + EA +I YF Sbjct: 713 IHVETASKLFKTEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYF 772 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 +P I E+I NFV+ GY ETI RR + EINS R+ ER AIN+ IQGSA Sbjct: 773 DSYPKIKEFIINQINFVKNTGYSETILKRRRYIKEINSNNYLERSAAERIAINSAIQGSA 832 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI V + K+ +K+LLQ+HDE++ E P +E +I+ ME A Sbjct: 833 ADIMKIAMIKVFNEFKSKKMESKILLQVHDEMLIESPIKEENEVKKILKIMMETAY---- 888 Query: 957 NLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 889 TLNLPLRANIETGKSWGE 906 >gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740] gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes] Length = 898 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 315/974 (32%), Positives = 503/974 (51%), Gaps = 91/974 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F++R+++A P L + G P + GF N++ ++ + R + I FA+ D Sbjct: 4 LTIIDTFGFLFRSYFALPPL-KSPSGFPTGLLMGFANLIAQIAKEYRSDYIV--FAL--D 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 R EI +YKA RP +PE LL QLP+ + G I I G+EADD+IA+ Y Sbjct: 59 SKEEGIRKEIDANYKAQRPDVPEELLKQLPVALEWIEKMGFKNITIPGYEADDVIASVNY 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A V IIS DKDL QL+ T L+D +K+++I E I K+G+ P + V Q+L Sbjct: 119 FANSHDVFVKIISHDKDLYQLIDGNTFLFDPLKKQEIREEQCIAKYGVSPAQFVDYQSLV 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA-ETARLSRK 245 GDS DN+PG+ G+G K+A L++ +G+LE I + ++ R +LE E A SR+ Sbjct: 179 GDSADNVPGVKGVGAKSAQKLIESFGSLEGIYERLEEVTPERLR-GLLEMGREDAYRSRE 237 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LV LR EHL LED + L++ F L ++ + + ++ V+ Sbjct: 238 LVRLR---------EHL-LEDFD-------LESCRFPSLHPLLSISGELMDLGMKRVLEK 280 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 I E E +T + S L F+ R Sbjct: 281 IQK--------EGEWIAPSTPSAPKSSPLKGN-------------FVRR----------- 308 Query: 366 DSYTKIVN-TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 T++V+ TK +++ + L +F TD+++ +K + + S + + + V Sbjct: 309 ---TELVDSTKRLEELLSSLTPSSVVAFDTETDSLETRSAKLVGFSFSL---EGEVGYYV 362 Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISM 483 V S G +E ++K F + +GHN+K+D +LH G Sbjct: 363 -------PVAHSYLGAGDQVSLEEARGAIEKIFSAQ---VVGHNLKFDLEILHGALGFYP 412 Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542 +G D M+++++LDSG + + ++W + K K +++ + E+A Sbjct: 413 KGRIGDSMILAWLLDSG-APVGLDFQMKRWFGHEMIPFEKMVKKGETFAQVALEEAAEYA 471 Query: 543 IENSNVILQLWLLLRPKL---IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 E++ +L+ L +L E LL + E L+ P I + +ME GI++D + +++ Sbjct: 472 GEDALATYRLYFRLEEELKKRGCESLLGLAESLEFPFIHTLIEMEERGIRVDTEFFARLN 531 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 AE+ + L ++ +G +FNL+S +QLG +LF KL PSG KTKTG + T + L + Sbjct: 532 AEVEVRIRELSGEVFAHAGGEFNLNSTQQLGGVLFEKLHLPSGKKTKTG-YSTDEKVLSE 590 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNH-INKRTQRVHTFYSLASTMTGRLASLEP 718 + G +PII+ ILE+R+L K+KSTY + L + + +R++T + T TGRL+S P Sbjct: 591 L-LGVHPIIEPILEYRELFKLKSTYIEPLTRFALQDKNRRIYTSFLHTGTSTGRLSSKNP 649 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIP+KT+ G+KIR+ FI+ LIS DYSQIELR+LAH ++ L F+ DIH Sbjct: 650 NLQNIPVKTEAGRKIRQGFIASEGNLLISLDYSQIELRLLAHFSQDPALVAAFKAGADIH 709 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 A +IFG E+ + R AKTINF +IYG+ +L+ LRI EA YI YF Sbjct: 710 YETAKKIFG---EREAKAHRGIAKTINFGLIYGMGSRKLSETLRISPKEAKGYIDSYFAS 766 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 FP + +++ + F ++GY ET+ GRR +++ +P+ + R A+N QGSAAD Sbjct: 767 FPTVKSFLKAQEEFALEHGYTETLLGRRRYFEFQQAPEYQ-KAAYLREAVNCIFQGSAAD 825 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 + + AM + + + + +LLQ+HDEL+FE P+E ++ + ME P L Sbjct: 826 LIKLAMNEIRRRFAQEE-SLWLLLQVHDELIFEAPKEHAEALARELALVME-GIHP---L 880 Query: 959 RVPLKVNIKVSNNW 972 RVPL+ I + +W Sbjct: 881 RVPLQCGISLGEHW 894 >gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301] gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301] Length = 964 Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust. Identities = 326/1022 (31%), Positives = 511/1022 (50%), Gaps = 132/1022 (12%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L LVDG S +R++YA R G+P + GF L ++++ + +++A Sbjct: 19 LLLVDGHSLAFRSYYAFAKGRDGGLRTRTGIPTSVCFGFLKALLEVMEQQQPKALA---- 74 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR+E +YKANR + PE + Q +P + G+EADD++ Sbjct: 75 IAFDLGGPTFRHEADENYKANRDEAPEDFKIDTDNLVALLQTLNLPILVEPGYEADDLLG 134 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTC---LY---------DTVKEEKIDIEHVIK 170 T + G+ V I+S D+DL QLV P LY + +ID VI Sbjct: 135 TVAQRGAEAGYRVRILSGDRDLFQLVDPEGAIRVLYLGNTFGRSANREAAREIDPAAVID 194 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K G+PPE+++ +AL GDS DNIPG+ GIG KTA LLQ +G+L+ I N IK R+ Sbjct: 195 KLGVPPEQVIDFKALCGDSSDNIPGVKGIGPKTAVDLLQAWGDLDRIYDNLEAIKPAVRK 254 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE---FTKLINR 287 + + E A SRKL + TD+P+ I +H L + ++ +L+ LE F + ++R Sbjct: 255 K-LESDREAAYHSRKLAQIVTDIPLAIDWDHYALTGFDEQEVLPWLEKLELQAFRRQVDR 313 Query: 288 VATTYDCDAANIEPVV---LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344 + + +E + LD T E +T + ++ L Q + Sbjct: 314 LQQLFGGQPPTVEALSDESLDFWTAE------------ETAAQQPRWPQLQPQIITTAAA 361 Query: 345 QTPQKLFLERLQKLSQYPINNDSYTKIV----NTKDIQQWVQKLETIGSASFKIITDTMD 400 T LE+ DS IV T D+ + +L IG A Sbjct: 362 LTDLVTLLEQ----------RDSPEAIVAWDTETTDLDPRLAQLVGIGCA---------- 401 Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460 + +P +A L ++ ++T+ L+ L+ E++ Sbjct: 402 -WGEEPDQLAYIPLGHEEGEQLPLQTV----------------------LTALRPILESD 438 Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519 K N K+D+L+L GI + G D ML SY+L+ H + ++A +WL Sbjct: 439 RHPKALQNAKFDRLILRHQGIELAGVVFDTMLASYLLNPSLG-HSLDALADRWLK----- 492 Query: 520 ILKSRKSS--IPIDKISDSQVQE----HAIENSNVILQLWLLLRPKLIVEKLLH-VYERL 572 L++R S +P K + + +V+ +L LL+ + L + E + Sbjct: 493 -LQTRSYSDLVPKGKTIAQVAIAAVAQYCGSDVHVVQRLIPLLKAGIAESPALQFLLETV 551 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 + P+ V+++ME GI+ID+ L ++S + L LE + L+G++FNL SPKQL ++ Sbjct: 552 ELPLEAVLAEMEDRGIRIDEGYLAELSEHLKGELDRLEGAAHTLAGDRFNLGSPKQLSEL 611 Query: 633 LFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 LF KL KTKTG + T A LE++ GD+PII ILE L+K+KSTY D+LP+ Sbjct: 612 LFEKLGLNVKKSRKTKTG-YSTDAAVLEKLQ-GDHPIIDLILEHCTLAKLKSTYVDALPS 669 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750 + R+HT ++ A T TGRL+S PNLQNIPI+T+ ++IR+AF+ L +ADY Sbjct: 670 LVAA-DGRIHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRQIRKAFLPREGWLLAAADY 728 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELRILAH+++ L + + D+HR+ A+ +F + E+++ + RR K INF +IY Sbjct: 729 SQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLF--DREEITSEERRIGKIINFGVIY 786 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 G+ R A + EA +I R++ R+P + Y++ + GYVET+ GRR ++D Sbjct: 787 GMGAQRFARETGSSTKEAQGFIDRFYDRYPRVFTYLQSLERQAIARGYVETVLGRRRYFD 846 Query: 871 EINSPKSSIRNINE------------------RAAINAPIQGSAADITRRAMISVHKSLE 912 ++ +R + RAA NAPIQGS+ADI + AM+ + L+ Sbjct: 847 FEDTGLQKLRGSDPESIDLDKIRPSRFEAQLLRAAANAPIQGSSADIIKVAMVQLQALLQ 906 Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ +MLLQ+HDELV E+P EE + + I +ME+A + L VPL V + +NW Sbjct: 907 SYQ--ARMLLQVHDELVLELPPEEWDSLAPQIQQTMEQA----VQLTVPLAVELHAGHNW 960 Query: 973 QE 974 E Sbjct: 961 ME 962 >gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo] gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo] Length = 889 Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust. Identities = 329/958 (34%), Positives = 499/958 (52%), Gaps = 82/958 (8%) Query: 24 PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKAN 83 PLL+ + G VNA GF L+ ++ KE H + FD TFR + YP+YKA Sbjct: 5 PLLNTR--GENVNAFIGFFKTLFFII----KEKNPKHLIITFDSEIPTFRKQKYPNYKAT 58 Query: 84 RPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKD 143 R P+ L+PQ+ ++ IP EI+G+EADD++A++ A K + IIS DKD Sbjct: 59 RDAPPDDLIPQIGWIKEGLLKAKIPIFEIEGYEADDLLASFAKKAAKNNYLTYIISPDKD 118 Query: 144 LMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGY 201 L+Q +S + ++D E+VIKK+GI ++ A+ GD DNIPGI GIG Sbjct: 119 LLQTMSEHIKILKIENNSFVEMDNEYVIKKFGINSFQIKDYLAIVGDRSDNIPGIKGIGP 178 Query: 202 KTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261 K AA LL+E+ L+ I N I KK +E +++ E A LS LV L D+ I +E+ Sbjct: 179 KGAANLLREFKTLKGIYSNLELI-SKKHQEILIKEKENAFLSYDLVSLEEDLKIP-EIEN 236 Query: 262 LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEID 321 L++ LIS + LI TY D I E + +A Sbjct: 237 FSLKNF-SKELISLFEKHSAISLI----KTYKKD----------ILKQEEENVA------ 275 Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWV 381 + S F+ Q+ + L L+ N Y I K++ + Sbjct: 276 -----QKSLFT---------------QEPIADNLDTLNTIDTENVKYHSITTKKELDNLI 315 Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK-VETIFIDLSVHTSQDST 440 + L+ S T ++D + ++ I I+IS FK E +I + ++ Sbjct: 316 ESLKKAKYISIDTETSSLDIYTARLIGISIS---------FKEFEGYYIPI------EAK 360 Query: 441 GKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRGFEDIMLMSYVLDS 498 GK + K I+ FE+ + IG N K+D +L G S + + D M+ +Y++D+ Sbjct: 361 GKIYIEKHYIIQKFNNLFESNPKI-IGQNYKFDYKILKNNGFSPIPPYFDTMIAAYLIDT 419 Query: 499 GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558 S + +A+K+L + + + + IS ++ E++++ +L+ + Sbjct: 420 N-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMATSYSSEDADITFRLFNIFTK 478 Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 KL + L + ++ P +V+ +ME GI +D++ LK+ E+ + L +E I G Sbjct: 479 KLKEDGLDKLMHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELIENEIIKSIG 538 Query: 619 EKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 FNL+SPKQ+ +ILF KL K P K + K LE + G + I+NI++ RQ Sbjct: 539 INFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKV----LESL-IGQHESIENIIKHRQ 593 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 ++K+KSTY D+L IN +T R+HT + T TGR+ S+ PNLQNIPIK + G+KIR+A Sbjct: 594 IAKLKSTYTDNLIELINHKTNRLHTSFIQTKTATGRITSINPNLQNIPIKDEKGRKIRKA 653 Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 F ISADYSQIEL ILAH+++ L + FEN+ DIH A+++F + ++++P Sbjct: 654 FKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHTETASKLFKIEEKEITPD 713 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 +RR AK+INF IIY +S FRLA +L I + EA +I YF +P I E+I NFVR Sbjct: 714 LRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSYFDSYPKIKEFITNQINFVRNT 773 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GY ETI RR + EINS R+ ER AIN+ IQGSAADI + AM+ V + K+ Sbjct: 774 GYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGSAADIMKIAMVRVFNEFKSKKM 833 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +K+LLQ+HDE++ E P +E +I+ ME A L +PL+ NI+ +W E Sbjct: 834 ESKILLQVHDEMLIESPIKEKNEVEKILKIMMETAY----TLNLPLRANIETGKSWGE 887 >gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] Length = 931 Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust. Identities = 325/989 (32%), Positives = 523/989 (52%), Gaps = 84/989 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L LVDG S YR+FYA R G+P + GF L ++L + +H A Sbjct: 8 LLLVDGHSLAYRSFYAFAYSREGGLRTSTGIPTSVSFGFLKSLLEVLD----KYTPTHVA 63 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR+E YK+ RP+ P + + ++ A IP + + GFEADDI+ Sbjct: 64 VAFDTRQPTFRHEADETYKSGRPETPPEFIEDVENLKQVLTALRIPILVVPGFEADDILG 123 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEE--KIDIEHVIKKWGIPPE 177 T + +A ++ + V I+S D+DL QL+ L+ K+ + E V +K GI P Sbjct: 124 TLSRLAPQD-YRVQILSGDQDLFQLIDTDGRVRVLHLNSKDRISEFGPEQVKEKLGIWPW 182 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 ++V +AL GD DNIPG+ GIG K A LL+ YG+L+ I + I Q K ++ + E Sbjct: 183 QVVDYKALCGDPSDNIPGVKGIGPKRAVELLERYGSLDEIFDHLDEI-QGKVQQYLKEGI 241 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A S+ + ++ D +PL D +L F +A L ++ Sbjct: 242 PAAHHSQFMARIKCD----VPLS----PDWESMKLTGFDQAELLPLLEKLEFHSFIAQVR 293 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 I+ T GI E E+ F+ D + + + L+ + Sbjct: 294 KIQ--------TALGGIPTEAEV-------VGAFNPTGDPANAPD-----EALWFD---- 329 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETI--GSASFKIITDTMDAFHSKPIAIAISTLD 415 + P+ + +I++T + + +++ G ++ T ++D ++ + I Sbjct: 330 FALDPVPSLPAVRIIDTPEQLELLRQELLACPGIVAWDTETTSLDPRDAQLVGIGCCW-- 387 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + D ++ L + Q S L K+ L+ +E+ + K N KYD + Sbjct: 388 SEGDIAY--------LPIGHRQGSNLDWELVKQ---SLQPLWEDPNRPKSLQNCKYDLSI 436 Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPID 531 +GI ++G + D ML SYVLD +SH++A +A L + + K++L +S I Sbjct: 437 FRAHGIRLQGIQFDPMLASYVLDP-EASHNLADLAATHLNLPTTSYKKLLGKEQS---IA 492 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 I S+V E+ ++ +L +L KL +L ++ +++ P+ V+ +ME GI+ Sbjct: 493 DIPISKVAEYCGTDAYCAYRLVPILTEKLQKTDPRLWDLFIQVELPLAQVLEEMEWIGIR 552 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP--SGAKTKT 647 +D + L+Q S E+ + L SLE+ Y +GE FNL+SPKQLG +LF KLK KT T Sbjct: 553 VDTEFLRQFSQELEQELQSLEQKAYAQAGETFNLNSPKQLGSLLFEKLKLDIRKTRKTAT 612 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G + T A LE++ GD+P+I+ I+++R L+K+KSTY D+LP + T RVHT ++ Sbjct: 613 G-YSTDASVLEKLE-GDHPLIETIVQYRTLAKLKSTYVDALPALVRSDTGRVHTDFNQTV 670 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S PNLQNIPI+T+ ++IR+AFI L +ADYSQIELRILAH+++ L Sbjct: 671 TATGRLSSSNPNLQNIPIRTEFSRRIRQAFIPQEGWLLTAADYSQIELRILAHLSQEPAL 730 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F + D+H + A + + ++++ + RR AKTIN+ +IYG+ R A + SE Sbjct: 731 LEGFRSGEDVHTLTARLL--LEKQEITSEERRLAKTINYGVIYGMGAQRFARTAGVSLSE 788 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A +++R+ R+ GI Y+ T+ FV ++GYVETI GRR ++ ++ + RAA Sbjct: 789 AKQFLQRFNERYAGIFAYLRSTEAFVEKHGYVETILGRRRYFPNLSRLTGHRKQAELRAA 848 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +NAPIQGSA+DI + AM+ + + L++ + +++LLQ+HDELVFEV E +I Sbjct: 849 VNAPIQGSASDIIKVAMVRLRQKLQNFR--SRLLLQVHDELVFEVDPSEWQALKPLIQRE 906 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEEN 976 ME A + L +PL V+I++ +NW+E N Sbjct: 907 MEGA----VPLSIPLVVDIQIGHNWKEAN 931 >gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] Length = 977 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 230/534 (43%), Positives = 339/534 (63%), Gaps = 11/534 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506 E+L+ LK + E++ K+G NIKYD VL +GI++RG +D ML SYVL++ R+ H + Sbjct: 450 EVLAVLKPWLESDAQQKVGQNIKYDMHVLANHGITLRGVVDDTMLESYVLEAHRT-HGMD 508 Query: 507 SIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IV 562 ++A + L + T +E+ +I D+++ +A E+++V LQL L P + Sbjct: 509 ALAGRHLNRTTITYEEVAGKGAKAIGFDQVALDVATPYAAEDADVTLQLHRTLWPAIEAS 568 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 E+L H+Y ++ P + V+ ME G+ +D+D L+ S ++++ L LE ++L+G+ FN Sbjct: 569 ERLRHIYRNIEMPTLQVLYDMERHGVLLDRDRLRAQSQQLAEQLQELERQAHELAGQPFN 628 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 L S KQLG+ILF +L P KT G+ T LE++ D P+ K +L+WR L+K+KS Sbjct: 629 LGSTKQLGEILFERLGLPVVKKTPAGKPSTDESVLEKLAL-DYPLPKVLLQWRGLAKLKS 687 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D LP ++ +T RVHT YS A +TGRLAS +PNLQNIP++T G++IR AFI+PP Sbjct: 688 TYTDKLPEMVDPKTGRVHTTYSQAVAITGRLASSDPNLQNIPVRTPEGRRIREAFIAPPG 747 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 +++SADYSQIELRI+AHI++ L + F + D+HR A+E+FGV I +V+ + RR+AK Sbjct: 748 HQMMSADYSQIELRIMAHISQDAGLLKAFADGEDVHRATASEVFGVPIAEVNSEQRRYAK 807 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 INF +IYG+S F LA L I R A YI RYF R+PG+ Y+E+T+ R+ GYVET+ Sbjct: 808 VINFGLIYGMSAFGLAANLGIERGAAQAYIDRYFARYPGVAAYMERTRAQAREQGYVETV 867 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 FGRR+ EI S R + ERAAINAP+QG+AAD+ + AMI VH L L ++++ Sbjct: 868 FGRRLWLPEIGSSNMGRRQMAERAAINAPMQGTAADLIKLAMIDVHAWLRRENLGARLVM 927 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 Q+HDELV EVP+ E+ + M L VPL + V NW++ + Sbjct: 928 QVHDELVLEVPDAEVERLKTDLPARMAGVA----QLSVPLLAEVGVGENWEQAH 977 Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 103/261 (39%), Positives = 146/261 (55%), Gaps = 7/261 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS+++RA++A P L R G P AI G ML +L ++R A+ Sbjct: 1 MTDTQTLLLVDGSSYLFRAYHALPDL-RNKAGEPTGAIHGMVGMLRRLRDDTRLHGGATL 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AVIFD P TFR+++Y YKANR + PE L+ Q+ + TQA G P + + G EADD+ Sbjct: 60 GAVIFDAPGRTFRDDLYEYYKANRSQTPEALVAQIAPIHELTQALGWPLLVVPGIEADDV 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-----DIEHVIKKWGIP 175 I T A G I + DKDL QLV T L +T+ + + D V K+G+ Sbjct: 120 IGTLATRARAAGMRTVISTGDKDLAQLVDDETLLVNTMTRDGVPPTVMDAAGVRDKFGVD 179 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ LTGD++DN+PG+ +G KTAA L EYG+L+ IL +A IK K EN+ Sbjct: 180 PGQIIDFLTLTGDAVDNVPGVDKVGPKTAAKWLNEYGSLDAILQHADEIKGKV-GENLRA 238 Query: 236 YAETARLSRKLVMLRTDVPIT 256 + R+LV + D ++ Sbjct: 239 ARDWLPRGRELVTVLRDADLS 259 >gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille] gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille] Length = 912 Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust. Identities = 250/611 (40%), Positives = 371/611 (60%), Gaps = 23/611 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I+ ++++W+QK+++ S T ++ ++ + I++ Sbjct: 315 YETILTEAELERWLQKIDSAVLTSIDTETTSLIPMQAQLVGISLCCEPGV--------AA 366 Query: 428 FIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 +I ++ H QD L++E +L +K + E+ K+G N+KYD + +G+++RG Sbjct: 367 YIPVA-HHYQDVP--QQLSRELVLEKMKPWLEDASKAKVGQNLKYDSHIFANHGVNLRGI 423 Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHA 542 D +L SYV +S RS HD+ S+A + L + T +E+ S I +++ + E+A Sbjct: 424 VHDTLLESYVFESHRS-HDMDSLALRHLNRKTITFQEVCGKGASQIGFEQVEIGRATEYA 482 Query: 543 IENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL + P + + L VYE+++ P V+ ++E G+ ID DLL + S E Sbjct: 483 AEDADITLQLHQRMWPNVAEDNGLTFVYEKIELPTAVVLQKIERNGVLIDPDLLAKQSNE 542 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + K +L +E+N Y+L+ + FNL+SPKQ+G+I F KLK P KT +G T + L+++ Sbjct: 543 LGKRMLEIEQNAYELAEQPFNLNSPKQIGEIFFEKLKLPVVKKTPSGSPSTDEEVLQKL- 601 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE+R LSK+KSTY D LP I+ T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 602 AEDYPLPKVLLEYRGLSKLKSTYTDKLPKMIDPTTGRVHTNYAQAVAVTGRLASNDPNLQ 661 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI+ G++IR AFI+ P ++SADYSQIELRI+AHI+ + Q F + DIHR Sbjct: 662 NIPIRNAEGRRIREAFIAAPGNVIVSADYSQIELRIMAHISGDENMLQAFADGEDIHRAT 721 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAEIFGV V + RR+AK INF +IYG+S F LA L I RS A YI+RYFHRF G Sbjct: 722 AAEIFGVERRAVDSEQRRYAKVINFGLIYGMSAFGLAGNLGIERSAAQSYIERYFHRFAG 781 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+++T+ + GYV+T+FGRR+ EINSP R ERAAINAP+QG+AAD+ + Sbjct: 782 VKRYMDETRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQGAERAAINAPMQGTAADLIK 841 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI+V LE KL +KM++Q+HDELV EVPE E+ + + M L+VP Sbjct: 842 LAMIAVQGWLETEKLQSKMIMQVHDELVLEVPETELPLVREKLPELMRHVA----QLKVP 897 Query: 962 LKVNIKVSNNW 972 L + V NNW Sbjct: 898 LIAEVGVGNNW 908 Score = 177 bits (449), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 95/256 (37%), Positives = 153/256 (59%), Gaps = 5/256 (1%) Query: 8 FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 LVDGSS++YRAF+A P L R +G P AI G NML +L ++ A + A +FD Sbjct: 1 MLVDGSSYLYRAFHAMPDL-RGPNGAPTGAIYGMINMLRRLRKDYPD---AEYMACVFDA 56 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 TFR+++Y +YKA R +P+ L+ Q+ + A +A G P + ++G EADD+I T Sbjct: 57 KGKTFRDDLYAEYKAQRASMPDDLVKQIEPIHEAVRAMGWPILMVEGIEADDVIGTLAVE 116 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 A K G I + DKDL QLV+ L +T+ EK+D + VI K+G+PPE+++ L G Sbjct: 117 AVKHGMDTVISTGDKDLAQLVNDRVMLINTMSNEKLDRDGVIAKFGVPPERIIDYLTLIG 176 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247 D++DN+PG+ +G KTA L +YG L+ I+ +A+ IK +N+ + ++ L+ Sbjct: 177 DTVDNVPGVDKVGPKTAVKWLTQYGTLDGIVEHAADIK-GAVGDNLRRALDWLPQAKTLI 235 Query: 248 MLRTDVPITIPLEHLI 263 ++TD ++ ++ ++ Sbjct: 236 TVKTDCDLSGHMDTIV 251 >gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] Length = 908 Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust. Identities = 331/979 (33%), Positives = 505/979 (51%), Gaps = 85/979 (8%) Query: 6 HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H Sbjct: 3 ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR + YP YKA R P+ L+PQ+ ++ IP E++G+EADD++A Sbjct: 57 ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180 ++ A K + IIS DKDL+Q +S + ++D E+V KK+G+ ++ Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK RE +++ E A Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +LV L ++ I +E+ L++ +IS + LI TY D E Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 EN +DQ S E T L ++ Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I ++ ++ L+ S T ++D + +K I I+IS Sbjct: 314 IDTENVKYRSITTKIELDNLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E +I + ++ GK + K I+ FE+ + IG N K+D +L Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417 Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 G + + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ E++++ +L+ + KL +KL + ++ P V+ +ME GI +D++ LK+ Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655 E+ K L ++E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 EQ I+N++++RQ++K+KSTY D+L IN +T R+HT + T TGR+ S Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 + PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I Y Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I E+I NFVR GY ETI RR + EINS R+ ER AIN+ IQGS Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V + K+ +K+LLQ+HDE++ E P EE +I+ ME A + Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAYI-- 889 Query: 956 INLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 890 --LNLPLRANIETGKSWGE 906 >gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1] Length = 908 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 331/979 (33%), Positives = 505/979 (51%), Gaps = 85/979 (8%) Query: 6 HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H Sbjct: 3 ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR + YP YKA R P+ L+PQ+ ++ IP E++G+EADD++A Sbjct: 57 ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180 ++ A K + IIS DKDL+Q +S + ++D E+V KK+G+ ++ Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK RE +++ E A Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +LV L ++ I +E+ L++ +IS + LI TY D E Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 EN +DQ S E T L ++ Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I ++ ++ L+ S T ++D + +K I I+IS Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E +I + ++ GK + K I+ FE+ + IG N K+D +L Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417 Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 G + + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ E++++ +L+ L KL +KL + ++ P V+ +ME GI +D++ LK+ Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655 E+ K L ++E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 EQ I+N++++RQ++K+KSTY D+L IN +T R+HT + T TGR+ S Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 + PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I Y Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I E+I NFV+ GY ETI RR + EINS R+ ER AIN+ IQGS Sbjct: 772 FDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V + K+ +K+LLQ+HDE++ E P EE +I+ ME A + Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAYI-- 889 Query: 956 INLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 890 --LNLPLRANIETGKSWGE 906 >gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414] gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414] Length = 970 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 334/1016 (32%), Positives = 503/1016 (49%), Gaps = 110/1016 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 LVDG S YR+++A R +G+P + GF L +++ + E+IA Sbjct: 15 FILVDGHSLAYRSYFAFAKGRDGGLRTKEGIPTSVCFGFLKCLLEVMTTEQPEAIA---- 70 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR+E YKA+RP PE +P L ++ F +P G+EADD++ Sbjct: 71 IAFDLNLPTFRHEADDTYKADRPGTPEDFIPDLKNLQELLTGFNLPIFTAPGYEADDVLG 130 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLY---DTVKEE-----KIDIEHVIKK 171 T A G+ V I+S DKDL QL++P T L D +K + IE V K Sbjct: 131 TLAQKASAAGYKVKILSGDKDLFQLINPEQEITVLNFSPDALKRSTNSITEFSIEEVKAK 190 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 G+ P ++V +AL GD DNIPG+ GIG KTA LL +YG+L I + IK + + Sbjct: 191 LGVLPTQIVDYKALCGDKSDNIPGVRGIGEKTAVQLLTKYGSLAEIYAAINEIKGAVQTK 250 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 + E A S+ L + DVP+ I LE+ L + L L+ LEF + ++ Sbjct: 251 -LAAGKEDAEKSKYLAKIVLDVPLEIKLENCKLTGFDTSLLTPILEKLEFKHFLGKI--- 306 Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351 D G ET T + S + + Q P L Sbjct: 307 -------------DELQQHFGGEIAETSTATPTDDEDEDISFFTPAETAAAILQQPASLI 353 Query: 352 LERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDT----MDAFHSKP 406 R I+NT + +++ V+ LET + + DT ++ + Sbjct: 354 QPR----------------IINTPEKLKELVKLLETFTNPDIPVAWDTETSDLEPRDATL 397 Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466 + I Q D E+ +I ++ G+N + + L + + K Sbjct: 398 VGIGCCWGTQPD------ESAYIPIA-----HKFGENLSQDVVFAELSPILTSADYPKTF 446 Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 N K+D+LV GI + G D ML SYVL+ + H++ I+ ++L ILKS + Sbjct: 447 QNGKFDRLVFRCQGIKLAGIVFDTMLASYVLNPD-TPHNLNDISLRYLGL----ILKSYE 501 Query: 526 SSIP----IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVV 580 +P I IS + V + + QL LR +L LH + +++P+ V+ Sbjct: 502 DLVPKGQTIADISIASVGYYCCLQVHATFQLVQKLREELEKFPALHKLLLEVEQPLEAVL 561 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ++ME TG+ I+ L ++S ++ +L LEE ++GE FNL SPKQL ILF KL Sbjct: 562 AEMEYTGVCINSAYLHELSQQLEIDLAKLEETATSIAGETFNLGSPKQLSVILFDKLGLS 621 Query: 641 S--GAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 + K KTG + T LE++ + + ++E+R LSK+KSTY D+LP + TQ Sbjct: 622 TKYSRKIKTG-YSTDVATLEKLQEVDETGFVDAMMEYRTLSKLKSTYVDALPALVRPDTQ 680 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 R+HT ++ T TGRL+S PNLQNIPI+T ++IR+AF+ + +ADYSQIELRI Sbjct: 681 RLHTNFNQTVTATGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGYLMAAADYSQIELRI 740 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 LAH+++ L Q ++ + DIH + A +F ++ RR AKTINF +IYG+ R Sbjct: 741 LAHLSQEPILLQAYQQNEDIHTVTARLVF--EKSDITSDERRIAKTINFGVIYGMGSLRF 798 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS--- 874 + I +S A ++IKR+ R+P + Y+E K GYVETI GRR + D N Sbjct: 799 SRSTGIDKSIANEFIKRFNERYPQVFAYLEGVKKQAISQGYVETILGRRRYVDFKNDSLR 858 Query: 875 ------PK----SSIRNINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 P+ S ++N+ R+A NAPIQGS+ADI + AMI +H+ L+ ++ Sbjct: 859 KLKNSKPEDIDLSKLKNLGPEDAGLLRSAANAPIQGSSADIIKIAMIRMHEVLQKYQ--A 916 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++LLQ+HDELVFEVP +E I ME A + L VPL V+++ +NW E Sbjct: 917 RLLLQVHDELVFEVPPQEWEELQPQIKSVMENA----VTLSVPLLVDVRAGDNWME 968 >gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] Length = 908 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 332/979 (33%), Positives = 504/979 (51%), Gaps = 85/979 (8%) Query: 6 HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H Sbjct: 3 ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPKHLI 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR + YP YKA R P+ L+PQ+ ++ IP E++G+EADD++A Sbjct: 57 ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180 ++ A K + IIS DKDL+Q +S + ++D E+V KK+G+ ++ Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK RE +++ E A Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +LV L ++ I +E+ L++ +IS + LI TY D E Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 EN +DQ S E T L ++ Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I ++ ++ L+ S T ++D + +K I I+IS Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E +I + ++ GK + K I+ FE+ + IG N K+D +L Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417 Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 G + + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ E++++ +L+ L KL +KL + ++ P V+ +ME GI +D++ LK+ Sbjct: 477 ATSYSSEDADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655 E+ K L ++E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLES 596 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 EQ I+N++++RQ++K+KSTY D+L IN +T R+HT + T TGR+ S Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 + PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I Y Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I E+I NFVR GY ETI RR + EINS R+ ER AIN+ IQGS Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V + K+ +K+LLQ+HDE++ E P EE +I+ ME A Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888 Query: 956 INLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 889 -TLNLPLRANIETGKSWGE 906 >gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505] gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505] Length = 988 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 329/1029 (31%), Positives = 523/1029 (50%), Gaps = 116/1029 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 + LVDG S +R+++A R G+P N GF L ++ + ++IA Sbjct: 13 IILVDGHSLAFRSYFAFAKSRAGGLRTKSGIPTNVCFGFIQCLLDVIAKEQPQAIA---- 68 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD A TFR+E +YKANR PE +P L + +A I I G+EADDI+ Sbjct: 69 IAFDLAAPTFRHEADSNYKANRADTPEDFIPDLFNLYDLLKALNIQIITQPGYEADDILG 128 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEEKIDIEH-----VIKK 171 T A G+ V I+S D+DL QL+ + + +K I+ V +K Sbjct: 129 TLAETAVCSGYRVKILSGDRDLFQLIDENKGITVLNFTPEALKSSANGIKEFHTLDVKEK 188 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 G+ P ++V +AL GD+ DNIPG+ GIG KTA LL Y +L I N ++I ++ Sbjct: 189 LGVLPTQVVDFKALCGDTSDNIPGVKGIGEKTAVKLLNTYKSLTEIYANINKIT-GTNQQ 247 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 ++ E A S+ L + TDVPITI ++ L+ + ++I L+ LEF K ++R+ Sbjct: 248 KLIAGQENALHSQYLAKIVTDVPITIKIQDCDLKGFDTAKIIPILEKLEFKKFLDRIQ-- 305 Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ------ 345 EI++ SQ +SL+ +T+K N++ Sbjct: 306 ---------------------------EIEK--KFSHSQSASLTGETNKSNTDNLAPDDD 336 Query: 346 -----TPQKLFLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDT- 398 + ++ Q L Q +++ +I++T++ + + V LE + DT Sbjct: 337 LWFFSAADTVNAQKSQTLKQG--SSEIKVRIIDTEEKLGELVNILEQHKDPQNPVAWDTE 394 Query: 399 ---MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455 +D ++ + I ++D ++ I L H + KN +LS L K Sbjct: 395 TTDLDPRNANLVGIGCCWGMGENDVAY------IPLG-HNITTNLEKNLQLNTVLSTLDK 447 Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS 514 + + K N K+D+L+ G+++ G D ML SY+L+ + H++ +A ++L Sbjct: 448 ILASRDYPKTFQNAKFDRLIFKYQGVTLDGVIFDPMLASYLLNPDHT-HNLTDLALRYLG 506 Query: 515 YTRKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL---LRPKL-IVEKLLH 567 E I++ P I+D + A + W L LR +L + L Sbjct: 507 LQLTEYDHIVQKSGKKEPQKTIADISIHTVANYCGKQVYATWQLVGKLREELNKIPALFK 566 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + +++P+ V+++ME G+ I+ L+Q+S I +L +LE ++GEKFNL SPK Sbjct: 567 LLVDVEQPLEVVLAEMEHRGVIINSAYLQQLSQYIESDLATLEIKATKIAGEKFNLGSPK 626 Query: 628 QLGDILFTKLKFPS--GAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIKSTY 684 QL ILF KL + K TG + T A LE++ + + I+E+R L+K+KSTY Sbjct: 627 QLSYILFEKLGLSTKYSRKISTG-YSTDAATLEKLQEVDETGFVDAIIEYRTLAKLKSTY 685 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 D+LP +N +TQR+HT ++ +T TGRL+S PNLQNIPI+T ++IR+AF+ Sbjct: 686 VDALPELVNHKTQRIHTSFNQTATATGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWL 745 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 +++ADYSQIELRILAH+++ L Q + N+ DIH + A +F + E V+ + RR AKTI Sbjct: 746 MVAADYSQIELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLF--DKEDVTSEERRFAKTI 803 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF +IYG+ + + + ++ A ++I+++ R+P + Y+E K GYVETI G Sbjct: 804 NFGVIYGMGVLKFSRSTGVDKNIANEFIQKFNQRYPLVFTYLETIKKQAISQGYVETILG 863 Query: 865 RRIHYDEINSP-------------KSSIRNINE------RAAINAPIQGSAADITRRAMI 905 RR ++D N + ++N+ R+A NAPIQGS+ADI + AM+ Sbjct: 864 RRRYFDFTNKTLREFKGKDLQEIELNKLKNLGPYDAGLLRSAANAPIQGSSADIIKIAMV 923 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 +H+ L ++ TK+LLQ+HDELVFEVP E I ME A + L VPL V+ Sbjct: 924 RLHQVLRPYQ--TKLLLQVHDELVFEVPPSEWDELQLQIKSVMENA----MKLSVPLVVD 977 Query: 966 IKVSNNWQE 974 + V NW E Sbjct: 978 VHVGENWME 986 >gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] Length = 908 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 331/979 (33%), Positives = 505/979 (51%), Gaps = 85/979 (8%) Query: 6 HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H Sbjct: 3 ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR + YP YKA R P+ L+PQ+ ++ IP E++G+EADD++A Sbjct: 57 ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180 ++ A K + IIS DKDL+Q +S + ++D E+V KK+G+ ++ Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK RE +++ E A Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +LV L ++ I +E+ L++ +IS + LI TY D E Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 EN +DQ S E T L ++ Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I ++ ++ L+ S T ++D + +K I I+IS Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E +I + ++ GK + K I+ FE+ + IG N K+D +L Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417 Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 G + + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ E++++ +L+ + KL +KL + ++ P V+ +ME GI +D++ LK+ Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655 E+ K L ++E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 EQ + I+N++++RQ++K+KSTY D+L IN +T R+HT + T TGR+ S Sbjct: 597 LREQ-----HESIENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 + PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I Y Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I E+I NFVR GY ETI RR + EINS R+ ER AIN+ IQGS Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V + K+ +K+LLQ+HDE++ E P EE +I+ ME A Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888 Query: 956 INLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 889 -TLNLPLRANIETGKSWGE 906 >gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] Length = 976 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 321/1024 (31%), Positives = 528/1024 (51%), Gaps = 118/1024 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIAS 59 L LVDG S +R+FYA S+ DG P + GF L +N E + Sbjct: 13 LLLVDGHSLAFRSFYA---FSKGIDGGLTTKEGFPTSVTYGFLKSLLDNCKNISPEGVC- 68 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEAD 118 + FD TFR+E+ P+YKANR P++ + + + ++ +P + G+EAD Sbjct: 69 ---ITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGYEAD 125 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHV 168 D++ T A +G+ V I+S D+DL QLV +Y + ++ V Sbjct: 126 DLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNENGV 185 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 +K G+ PE++V L+ALTGDS DNIPGI G+G KTA LL+E L+ I +I+Q K Sbjct: 186 KEKLGVAPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYQALDKIQQNK 245 Query: 229 RR-----------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277 + E + A LSR L + T+VP+ + L++ N L LK Sbjct: 246 DKKYKGFIKGSVIEKLRNDKHNAFLSRDLAKINTEVPLILS-NGYELKNINQELLSESLK 304 Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337 LE + L+ ++ N+T +KG D++ K Sbjct: 305 KLELSTLLRQIDI---------------FNSTFSKG-----GFDKNNVAK---------- 334 Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS-ASFKIIT 396 E+ P+ L+ S+ I + T + + + + + +Q+L+ S T Sbjct: 335 ----EEEKAPKVAGNNELEN-SENKIPKINVTVVNDFELLDKLIQRLDKTNQIVSLDTET 389 Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456 ++++ ++ + I + ++ DD +I L H ++ T +++ S L+ + Sbjct: 390 NSLNPIDAELVGIGLCLGEENDDL------FYIPLG-HQTKKETPDQLSIEDVFSKLRNW 442 Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515 E+ K N K+D+ + +G+ ++G D +L Y+L++ + H ++ I+ + + Sbjct: 443 IEDPKKEKALQNSKFDRQIFFNHGLDLKGVTFDTLLADYLLNN-QEKHGLSEISFRLFGF 501 Query: 516 ---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHVYE 570 + KE + K +D I ++ + + + + ++ + + EK L+ ++E Sbjct: 502 KPPSFKETVGKNKDFSFVD-IDEASI--YCGYDVFLTFKIVKIFKESFSKEKDELIKLFE 558 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 ++ P+ V+SQME+ GI ID L ++S E+ L +E +Y+L+ E FNLSSPKQLG Sbjct: 559 EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELADESFNLSSPKQLG 618 Query: 631 DILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 +ILF KL KTKTG W T A LE++ ++ II+++++ R LSK+ STY D+L Sbjct: 619 EILFEKLNLDKKKSRKTKTG-WSTDAVVLERL-VDEHEIIQHLIKHRTLSKLLSTYIDAL 676 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748 PN IN++T RVHT ++ A+T TGRL+S PNLQNIP++T+ ++IR+AF+ KL+SA Sbjct: 677 PNLINEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLSA 736 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELRILAH+A L F + DIH + A IF E++S RR KTINF + Sbjct: 737 DYSQIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERRVGKTINFGV 794 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 IYG+ + A + EA +++ +Y R+ I +++E + GYV+TIFGR+ Sbjct: 795 IYGMGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKRE 854 Query: 869 YD---------------EIN---SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910 + EI+ + ++ + + RAA NAPIQGS+ADI + AM+ ++K Sbjct: 855 FKFDKNGLGRLLGKDPYEIDLQAARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKK 914 Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970 + + KMLLQ+HDEL+FEV + + ++++ +ME + L VPL V++ + + Sbjct: 915 FTEMNVPAKMLLQVHDELLFEVEPDSLEITTKLVKKTMEDC----VKLNVPLLVDVGIGD 970 Query: 971 NWQE 974 NW E Sbjct: 971 NWME 974 >gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] Length = 908 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 330/979 (33%), Positives = 505/979 (51%), Gaps = 85/979 (8%) Query: 6 HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H Sbjct: 3 ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR + YP YKA R P+ L+PQ+ ++ IP E++G+EADD++A Sbjct: 57 ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180 ++ A K + IIS DKDL+Q +S + ++D E+V KK+G+ ++ Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK RE +++ E A Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +LV L ++ I +E+ L++ +IS + LI TY D E Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 EN +DQ S E T L ++ Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I ++ ++ L+ S T ++D + +K I I+IS Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E +I + ++ GK + K I+ FE+ + IG N K+D +L Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417 Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 G + + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ E++++ +L+ + KL +KL + ++ P V+ +ME GI +D++ LK+ Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655 E+ K L ++E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 EQ I+N++++RQ++K+KSTY D+L IN +T R+HT + T TGR+ S Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 + PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I Y Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I E+I NFV+ GY ETI RR + EINS R+ ER AIN+ IQGS Sbjct: 772 FDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V + K+ +K+LLQ+HDE++ E P EE +I+ ME A + Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAYI-- 889 Query: 956 INLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 890 --LNLPLRANIETGKSWGE 906 >gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9] gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9] Length = 988 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 333/1020 (32%), Positives = 526/1020 (51%), Gaps = 98/1020 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 + LVDG S +R+++A R G+P N GF L ++ + ++IA Sbjct: 13 IILVDGHSLAFRSYFAFAKSRAGGLRTKSGIPTNVCFGFMQCLLDVIVKEQPQAIA---- 68 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD A TFR+E +YKANR PE +P L + +A I I G+EADDI+ Sbjct: 69 VAFDLAAPTFRHEADSNYKANRADTPEDFIPDLVNLYDLLEALNIQVITQPGYEADDILG 128 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEEKIDIEH-----VIKK 171 T + G+ V I+S D+DL QL+ + + +K I+ V +K Sbjct: 129 TLAETSVCSGYRVKILSGDRDLFQLIDENKGISVLNFTPEALKSSSNGIKEFHTLDVKEK 188 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 G+ P ++V +AL GD+ DNIPG+ GIG KTA LL Y +L I N ++I ++ Sbjct: 189 LGVLPTQVVDFKALCGDTSDNIPGVKGIGEKTAVKLLNIYKSLTEIYANINKIT-GANQQ 247 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 ++ E+A S+ L + TDVPITI ++ L+ + ++I L+ LEF K ++++ Sbjct: 248 KLIAGQESAFHSQYLAKIVTDVPITIKIQDCHLKGFDTAKIIPILEKLEFKKFLDKIQ-- 305 Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351 IE + +T G + + + F S +D +N++++ Sbjct: 306 ------EIEKKFIHSQSTSLTGETNNSNTNNLSLDDDLWFFSAAD---TVNAQKS----- 351 Query: 352 LERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDT----MDAFHSKP 406 Q L Q +++ +I++T+D +++ V LE + DT +D ++ Sbjct: 352 ----QTLKQG--SSEIKVRIIDTEDKLRELVNILEQHKDPENPVAWDTETTDLDPRNANL 405 Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466 + I ++D ++ I L H + KN +LS L+K + + K Sbjct: 406 VGIGCCWGTGENDVAY------IPLG-HNITSNLEKNLPLNTVLSTLEKILVSGDYPKTF 458 Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY--------TR 517 N K+D+L+ GI++ G D ML SYVL+ R+ H++ +A ++L + Sbjct: 459 QNAKFDRLIFKYQGITLDGVVFDPMLASYVLNPDRT-HNLTDLALRYLGLQLTEYDDIVQ 517 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPM 576 K K R+ +I IS V + + QL LR +L + L + +++P+ Sbjct: 518 KSGKKERQKTIA--DISIHTVANYCGKQVYATWQLVGKLREELNEIPALFKLLVDVEQPL 575 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 V+++ME G+ I+ L+Q+S I +L +LE ++GEKFNL SPKQL ILF K Sbjct: 576 EVVLAEMEHRGVIINSAYLQQLSQHIESDLATLEIKATKIAGEKFNLGSPKQLSYILFEK 635 Query: 637 LKFPS--GAKTKTGQWKTTAQDLEQINCGDNP-IIKNILEWRQLSKIKSTYADSLPNHIN 693 L + K TG + T A LE++ D + I+E+R L+K+KSTY D+LP +N Sbjct: 636 LGLSTKYSRKISTG-YSTDAATLEKLQEVDQTGFVDAIIEYRTLAKLKSTYVDALPELVN 694 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753 +TQR+HT ++ +T TGRL+S PNLQNIPI+T ++IR+AF+ +++ADYSQI Sbjct: 695 HKTQRIHTNFNQTATATGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLMVAADYSQI 754 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELRILAH+++ L Q + N+ DIH + A +F + E V+ + RR AKTINF +IYG+ Sbjct: 755 ELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLF--DKEDVTSEERRFAKTINFGVIYGMG 812 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + + + ++ A ++I+++ R+P + Y+E K GYVETI GRR ++D N Sbjct: 813 VLKFSRSTGVDKNIANEFIQKFNQRYPLVFTYLETIKKQAISQGYVETILGRRRYFDFTN 872 Query: 874 SPKSSIRN-------INE------------RAAINAPIQGSAADITRRAMISVHKSLEDH 914 ++ +N+ R+A NAPIQGS+ADI + AM+ +H+ L + Sbjct: 873 KTLQQLKGKDLQEIELNKLKNLGPYDAGLLRSAANAPIQGSSADIIKIAMVRLHEVLRRY 932 Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + K+LLQ+HDELVFEVP E I ME A + L VPL V+I V NW E Sbjct: 933 Q--AKLLLQVHDELVFEVPPSEWDELQLQIKSVMENA----MKLSVPLVVDIHVGENWME 986 >gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str. MIT 9202] gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str. MIT 9202] Length = 976 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 322/1025 (31%), Positives = 529/1025 (51%), Gaps = 120/1025 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIAS 59 L LVDG S +R+FYA S+ DG P + GF L LL N + S Sbjct: 13 LLLVDGHSLAFRSFYA---FSKGIDGGLTTKEGFPTSVTYGF---LKSLLDNCKNIS-PQ 65 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEAD 118 + FD TFR+E+ P+YKANR P++ + + + ++ +P + G+EAD Sbjct: 66 GVCITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGYEAD 125 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHV 168 D++ T A +G+ V I+S D+DL QLV +Y + ++ V Sbjct: 126 DLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNENGV 185 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 +K G+ PE++V L+ALTGDS DNIPGI G+G KTA LL+E L+ I +I+Q Sbjct: 186 KEKLGVAPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYKALDKIQQNN 245 Query: 229 RR-----------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277 + E + A LSR L + T+VP+ + L++ N L LK Sbjct: 246 DKKYKGFIKGSVIEKLRNDKHNAFLSRDLAKINTEVPLILS-NGYELKNINQELLSESLK 304 Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS-SLSD 336 LE + L+ ++ N+T +KG D++ K + + +S Sbjct: 305 KLELSTLLRQIDI---------------FNSTFSKG-----GFDKNNVAKEEEKAPKVSG 344 Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS-ASFKII 395 NSE K+ + T + + + + + +Q+L+ S Sbjct: 345 NNELENSENKIPKI----------------NVTVVNDFELLDKLIQRLDKTNQIVSLDTE 388 Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455 T++++ ++ + I + ++ DD +I L H ++ T +++ S L+ Sbjct: 389 TNSLNPIDAELVGIGLCLGEENDDL------FYIPLG-HQTKKETPNQLSIEDVFSKLRN 441 Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514 + E+ K N K+D+ + +G+ ++G D +L Y+L++ + H ++ I+ + Sbjct: 442 WIEDPRKEKALQNSKFDRQIFFNHGLDLKGVTFDTLLADYLLNN-QEKHGLSEISFRLFG 500 Query: 515 Y---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHVY 569 + + KE + K +D I ++ + + + + ++ + + + EK L+ ++ Sbjct: 501 FKPPSFKETVGKNKDFSFVD-IGEASI--YCGYDVFLTFKIVKIFKERFSKEKDELIKLF 557 Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629 E ++ P+ V+SQME+ GI ID L ++S E+ L +E +Y+L+ E FNLSSPKQL Sbjct: 558 EEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAEENFNLSSPKQL 617 Query: 630 GDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 G+ILF KL KTKTG W T A LE++ ++ II+++++ R LSK+ STY D+ Sbjct: 618 GEILFEKLNLDKKKSRKTKTG-WSTDAVVLERL-VDEHEIIQHLIKHRTLSKLLSTYIDA 675 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747 LPN IN++T RVHT ++ A+T TGRL+S PNLQNIP++T+ ++IR+AF+ KL+S Sbjct: 676 LPNLINEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKLLS 735 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIELRILAH+A L F + DIH + A IF E++S + RR KTINF Sbjct: 736 ADYSQIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSEERRVGKTINFG 793 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 +IYG+ + A + EA +++ +Y R+ I +++E + GYV+TIFGR+ Sbjct: 794 VIYGMGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKR 853 Query: 868 HY------------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 + D ++ ++ + + RAA NAPIQGS+ADI + AM+ ++K Sbjct: 854 EFKFDKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNK 913 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 + + KMLLQ+HDEL+FEV ++ + ++++ +ME + L VPL V+I Sbjct: 914 KFIEMNVPAKMLLQVHDELLFEVEQDSLEITTKLVKKTMEDC----VKLNVPLLVDIGTG 969 Query: 970 NNWQE 974 +NW E Sbjct: 970 DNWME 974 >gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] Length = 908 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 330/979 (33%), Positives = 505/979 (51%), Gaps = 85/979 (8%) Query: 6 HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H Sbjct: 3 ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPKHLI 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR + YP YKA R P+ L+PQ+ ++ IP E++G+EADD++A Sbjct: 57 ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180 ++ A K + IIS DKDL+Q +S + ++D E+V KK+G+ ++ Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK RE +++ E A Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +LV L ++ I +E+ L++ +IS + LI TY D E Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 EN +DQ S E T L ++ Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I ++ ++ L+ S T ++D + +K I I+IS Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E +I + ++ GK + K I+ FE+ + IG N K+D +L Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417 Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 G + + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ E++++ +L+ + KL +KL + ++ P V+ +ME GI +D++ LK+ Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655 E+ K L ++E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 EQ I+N++++RQ++K+KSTY D+L IN +T R+HT + T TGR+ S Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 + PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I Y Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I E+I NFV+ GY ETI RR + EINS R+ ER AIN+ IQGS Sbjct: 772 FDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V + K+ +K+LLQ+HDE++ E P EE +I+ ME A + Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAYI-- 889 Query: 956 INLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 890 --LNLPLRANIETGKSWGE 906 >gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Length = 605 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 250/617 (40%), Positives = 381/617 (61%), Gaps = 20/617 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 2 ISYDNYVTILDEETLKAWIAKLEKAPVFAFATATDSLDNISANLVGLSFA-IEPGVAAYI 60 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 V ++D S++ L LK E+E LK+G N+KYD+ +L YGI Sbjct: 61 PVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I+ + Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID +L Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T+ + L Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGRL+S + Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F DI Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ YF Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+QG+AA Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---TR 586 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 587 LDVPLLVEVGSGENWDQ 603 >gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] Length = 908 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 331/979 (33%), Positives = 504/979 (51%), Gaps = 85/979 (8%) Query: 6 HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H Sbjct: 3 ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPKHLI 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR + YP YKA R P+ L+PQ+ ++ IP E++G+EADD++A Sbjct: 57 ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMV 180 ++ A K + IIS DKDL+Q +S + I++ E+V KK+G+ ++ Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMGNEYVTKKFGVNSFQIK 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK RE +++ E A Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +LV L ++ I +E+ L++ +IS + LI TY D E Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 EN +DQ S E T L ++ Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I ++ ++ L+ S T ++D + +K I I+IS Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E +I + ++ GK + K I+ FE+ + IG N K+D +L Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417 Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 G + + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ E++++ +L+ + KL +KL + ++ P V+ +ME GI +D++ LK+ Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655 E+ K L ++E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 EQ I+N++++RQ++K+KSTY D+L IN +T R+HT + T TGR+ S Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 + PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I Y Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I E+I NFVR GY ETI RR + EINS R+ ER AIN+ IQGS Sbjct: 772 FDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V + K+ +K+LLQ+HDE++ E P EE +I+ ME A Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888 Query: 956 INLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 889 -TLNLPLRANIETGKSWGE 906 >gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] Length = 911 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 233/589 (39%), Positives = 362/589 (61%), Gaps = 20/589 (3%) Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450 +F T ++DA ++ + ++ + F+ T + HT D+ E L Sbjct: 336 AFDTETTSLDAMRAEIVGMSFA---------FEPGTAWYLPLAHTGPDAD-PQLPRAETL 385 Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509 LK + E+E K+GH++KYD+ VL +GI++RG +D +L S+ LD+G + HD+ S+A Sbjct: 386 ERLKPWLESERHGKLGHHLKYDRNVLGNHGITLRGIVDDTLLESFCLDAGANRHDLDSLA 445 Query: 510 QKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKL 565 ++ L Y +++ IP ++ ++A E++++ LQL + +P+L E Sbjct: 446 ERHLDYKTTHYEDVAGKGVKQIPFAEVDIGIATDYAGEDADICLQLDAVFQPRLQAAEGP 505 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 VY ++ P++ V++ +E G+++D D L + S E+ + +E ++ +G +FNL S Sbjct: 506 AFVYREIEMPLVPVLADIERVGVKVDPDRLGEQSQELLAEMERIEREAFEEAGGEFNLGS 565 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQ+ +ILF +L P +T GQ T LEQ+ D + + ILE R LSK++STY Sbjct: 566 PKQIQEILFERLGLPVLRRTPKGQPSTAEDVLEQM-ADDYALPRLILEHRGLSKLRSTYT 624 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745 ++LP I+ T RVHT Y A TGRL+S EPNLQNIP++T+ G++IRRAFI+ +L Sbjct: 625 ETLPRRIHPETGRVHTSYHQAGAATGRLSSSEPNLQNIPVRTEAGRRIRRAFIAEEGHQL 684 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 ++ADYSQIELRI+AH+++ L + F DIHR AAE+FG++ E+VS RR AK IN Sbjct: 685 LAADYSQIELRIMAHLSQDAGLLKAFAEGQDIHRATAAEVFGLDPEQVSGDQRRAAKAIN 744 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F +IYG+S + LA L I + EA +YI RYF R+PG+H+Y+E+ + R+NGYVET+FGR Sbjct: 745 FGLIYGMSAWGLARNLGIEQGEAREYIDRYFSRYPGVHDYMERARASGRENGYVETLFGR 804 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R++ EINS + R +ER AINAP+QG+AADI +RAM+ V LED + +M++Q+H Sbjct: 805 RLYLPEINSRNGARRQQSERVAINAPMQGTAADIIKRAMVRVAHDLEDTGIDARMIMQVH 864 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DELVFEV + + + ++ +M A +L V L V++ V NW + Sbjct: 865 DELVFEVADAAVEDLTTLVRKAMSGAA----DLDVELVVDVGVGANWDD 909 Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 116/295 (39%), Positives = 171/295 (57%), Gaps = 7/295 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS+++RAF+A P L+ DG P A+ G NML KL R + H AV+FD Sbjct: 17 LVLVDGSSYLFRAFHALPPLTAP-DGAPTGAMIGVANMLRKL----RADYGPEHMAVVFD 71 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++IYP+YKA RP +P+ L Q+ + +A G+P + ++G EADD+IAT Sbjct: 72 AKGKTFRDDIYPEYKATRPPMPDELAAQIEPLHELVRAMGLPLLCVEGVEADDVIATLAD 131 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A G V I + DKDL QLV+ L +T+ +D E V +K+G+ PE++V AL Sbjct: 132 QAAAAGHDVVISTGDKDLAQLVNDRITLVNTMSGVTLDREGVQEKFGVAPEQIVDYLALM 191 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DNIPG+ +G KTAA + +YG+L+ IL A I K EN+ AE SR+L Sbjct: 192 GDSVDNIPGVDKVGPKTAAKWIAKYGDLDTILEQADDIGGKI-GENLRAAAERLPTSREL 250 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 + ++ DV + L + + + RL+ ++ FT+ + + D +AA+ P Sbjct: 251 ITVKRDVELDAGPNDLNIREPDHERLLEMVRRYGFTRWRAELEGSED-EAADGNP 304 >gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] Length = 937 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 240/618 (38%), Positives = 371/618 (60%), Gaps = 25/618 (4%) Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 P + Y ++ + + W ++E + TD++D ++ + ++ S Sbjct: 334 PAVDKRYETVLAREAFEAWRARIEAADLVALDTETDSLDGMRARIVGLSFSVQ------- 386 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 E +I L+ HT + + L E+L+ LK + E+ K+G N+KYD V +GI Sbjct: 387 -PYEACYIPLA-HTYPGAPDQLPL-DEVLAALKSWLEDGSRAKLGQNVKYDTHVFANHGI 443 Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIA-----QKWLSYTRKEILKSRKSSIPIDKISD 535 ++RG+ D +L SYVL++ H + S+A +K LSY +++ IP ++ Sbjct: 444 AVRGYVHDTLLQSYVLEA-HKPHSLESLASRHLDRKGLSY--EDVAGKGAQQIPFAQVEL 500 Query: 536 SQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 ++ E++ E+S++ L + +L P+L +L VYER++ P ++ ++E G+ ID L Sbjct: 501 TRATEYSGEDSDMTLDVHRVLWPQLEAAPRLREVYERIEMPTSVILGRIERHGVLIDSAL 560 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L + SA++++ +++LE+ + L+G+ FNL SPKQ+G+ILF KL P+ KT +G T Sbjct: 561 LARQSADLAQRMVALEQEAHALAGQPFNLGSPKQIGEILFNKLGIPAKKKTASGAPSTDE 620 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 + L ++ D P+ +LE R L+K+K TY D LP +N T RVHT Y+ A +TGRLA Sbjct: 621 EVLAEL-AADYPLPAKLLEHRSLAKLKGTYTDKLPLMVNAATGRVHTNYAQAVAVTGRLA 679 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIPI+T G+++R AFI+PP ++SADYSQIELRI+AHI++ L + F Sbjct: 680 SNDPNLQNIPIRTPEGRRVREAFIAPPGHVILSADYSQIELRIMAHISEDPGLLKAFAEG 739 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 LD+HR A+E+F V + +VS + RR+AK INF +IYG+ F LA+ L I + A DYI R Sbjct: 740 LDVHRATASEVFNVPVAEVSSEQRRYAKVINFGLIYGMGAFGLASNLGIEQKAAKDYIDR 799 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF RF G+ Y+++T+ ++ GYVET+FGRRI+ EIN R ER AINAP+QG Sbjct: 800 YFARFAGVKRYMDETRARAKELGYVETLFGRRIYLPEINGGNGPRRTGAERQAINAPMQG 859 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AAD+ + AMI+V +L+ + AT M++Q+HDELVFEVPE E+ A + M Sbjct: 860 TAADLIKLAMIAVQAALDAQQRATCMVMQVHDELVFEVPEAELDWARTAVPELMAGVA-- 917 Query: 955 KINLRVPLKVNIKVSNNW 972 L+VPL + V NW Sbjct: 918 --ELKVPLLAEVGVGANW 933 Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 100/250 (40%), Positives = 148/250 (59%), Gaps = 6/250 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G ML KL R+E ++H A +FD Sbjct: 9 LLLVDGSSYLYRAYHALPDL-RNPAGEPTGAVRGMVAMLKKL----REEFPSAHAACVFD 63 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ YP+YKANR +PE L Q+ + G P +EI G EADD+I T Sbjct: 64 AKGKTFRDDWYPEYKANRASMPEDLARQIAPIHAVVTLLGWPVLEIPGIEADDVIGTLAR 123 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A G V + + DKDL QLV L +T+ E++D+ V +K+G+PPE++V L Sbjct: 124 AAAARGQRVIVSTGDKDLAQLVDAHVTLINTMSGERLDVAGVTEKFGVPPERIVDYLTLV 183 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ +G KTAA + E+G+L+ ++ A IK EN+ + + L R+L Sbjct: 184 GDAVDNVPGVEKVGPKTAAKWIAEHGSLDGVMAAADAIKGVA-GENLRKALDWLPLGRRL 242 Query: 247 VMLRTDVPIT 256 V ++TD ++ Sbjct: 243 VTVKTDCDLS 252 >gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40] Length = 908 Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust. Identities = 330/979 (33%), Positives = 504/979 (51%), Gaps = 85/979 (8%) Query: 6 HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H Sbjct: 3 ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR + YP YKA R P+ L+PQ+ ++ IP E++G+EADD++A Sbjct: 57 ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180 ++ A K + IIS DKDL+Q +S + ++D E+V KK+G+ ++ Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK RE +++ E A Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +LV L ++ I +E+ L++ +IS + LI TY D E Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 EN +DQ S E T L ++ Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I ++ ++ L+ S T ++D + +K I I+IS Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E +I + ++ GK + K I+ FE+ + IG N K+D +L Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFESNPKI-IGQNYKFDYKILKN 417 Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 G + + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ E++++ +L+ + KL +KL + ++ P V+ +ME GI +D++ LK+ Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655 E+ K L ++E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 EQ I+N++++RQ++K+KSTY D+L IN +T R+HT + T TGR+ S Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 + PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I Y Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I E+I NFV+ GY ETI RR + EINS R+ ER AIN+ IQGS Sbjct: 772 FDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V + K+ +K+LLQ+HDE++ E P EE +I+ ME A Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAY--- 888 Query: 956 INLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 889 -TLNLPLRANIETGKSWGE 906 >gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v] Length = 605 Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust. Identities = 250/617 (40%), Positives = 382/617 (61%), Gaps = 20/617 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ D+Y I++ + +++W+ KLE +F TD++D + + ++ + ++ Sbjct: 2 ISYDNYVTILDEETLKEWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAYI 60 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 V ++D S++ L LK E+E LK+G N+KYD+ +L YGI Sbjct: 61 PVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I+ + Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID +L Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T+ + L Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGRL+S + Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F DI Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ YF Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+QG+AA Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKI-HQLMENC---TR 586 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 587 LDVPLLVEVGSGENWDQ 603 >gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Manganese gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc Only gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And Manganese gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate And Europium (Iii) Ion gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Short Dna Fragment Carrying 2'-0- Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3' gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Tetramer Carrying 2'-O-(3-Aminopropyl)- Rna Modification 5'-D(Tt)-Ap(U)-D(T)-3' gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431] gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G] gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180] gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357] gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74] Length = 605 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 250/617 (40%), Positives = 381/617 (61%), Gaps = 20/617 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 2 ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAYI 60 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 V ++D S++ L LK E+E LK+G N+KYD+ +L YGI Sbjct: 61 PVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I+ + Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID +L Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T+ + L Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGRL+S + Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F DI Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ YF Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+QG+AA Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---TR 586 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 587 LDVPLLVEVGSGENWDQ 603 >gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex Length = 605 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 250/617 (40%), Positives = 381/617 (61%), Gaps = 20/617 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 2 ISYDNYVTILDEETLKAWIAKLEKAPVFAFATETDSLDNISANLVGLSFA-IEPGVAAYI 60 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 V ++D S++ L LK E+E LK+G N+KYD+ +L YGI Sbjct: 61 PVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I+ + Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID +L Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T+ + L Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGRL+S + Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F DI Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ YF Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+QG+AA Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---TR 586 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 587 LDVPLLVEVGSGENWDQ 603 >gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] Length = 896 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 248/639 (38%), Positives = 382/639 (59%), Gaps = 33/639 (5%) Query: 349 KLFLERLQKLSQYPINND---SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405 + +LE L + + P+ SY I +++ +W+Q+LE +F T +++ +K Sbjct: 276 RAWLEDLLEEGEAPVVEQLETSYEIITEQQELDRWLQQLEAAELFAFDTETTSLNYMEAK 335 Query: 406 PIAIAISTLDQKDDTSFKVET---IFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENE 460 + + SF +E ++ L+ D G L ++ +L+ +K E+ Sbjct: 336 VVGV-----------SFAIEAGKAAYVPLA----HDYLGAPEQLDRDAVLAQMKPLLEDP 380 Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR-- 517 + K+G N+KYD VL +GI+++G + D ML SYVLDS + HD+ S+A K+L Sbjct: 381 NQAKVGQNLKYDASVLANHGIALKGIDYDTMLESYVLDSTATRHDMDSLALKYLGQNTIH 440 Query: 518 -KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKP 575 ++I + +++ + +A E++++ L+L L PKL + LL V+ ++ P Sbjct: 441 FEDIAGKGAKQLTFNQVKVEEAGPYAAEDADITLRLHQALWPKLEELSSLLPVFRDIELP 500 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 ++ V+S++E G + ++L Q S E+ L L+ Y+L+G++FNL SPKQLG+ILF Sbjct: 501 LVPVLSKIERQGALLSCEMLHQQSTELGLRLEELKSAAYELAGQEFNLGSPKQLGEILFE 560 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 KL+ P KT G T + L ++ D P+ K +LE+R LSK+KSTY D LP +N + Sbjct: 561 KLELPIIKKTPKGAPSTAEEVLVELAL-DYPLPKLLLEYRSLSKLKSTYTDKLPGMVNPQ 619 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T RVHT Y A TGRL+S +PNLQNIPI+T+ G++IR+AFI+P ++++ADYSQIEL Sbjct: 620 TGRVHTSYHQAVAATGRLSSSDPNLQNIPIRTEEGRRIRQAFIAPQGFRIVAADYSQIEL 679 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH++ L F+ D+HR AAE+F V++++VS RR AK INF +IYG+S F Sbjct: 680 RIMAHLSDDPSLLTAFKEGQDVHRATAAEVFEVSLDEVSGDQRRKAKAINFGLIYGMSAF 739 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA QL + R EA +YI RYF R+PG+ +Y+++T+ ++ G+VET+FGRR++ EIN+ Sbjct: 740 GLAKQLHLGRHEAQEYIDRYFERYPGVAQYMDRTRAIAKEQGFVETLFGRRLYLPEINAR 799 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 ER AINAP+QGSAADI +RAM+SV + LE +M++Q+HDELV EV + Sbjct: 800 NKMRVQAAERTAINAPMQGSAADIIKRAMLSVDQWLEQGDANARMIMQVHDELVLEVAND 859 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+ S + M A L VPL V V +NW E Sbjct: 860 EVDAVSNQVCRLMSGAA----ELAVPLLVEAGVGDNWDE 894 Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 158/280 (56%), Gaps = 11/280 (3%) Query: 8 FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 LVDGSS++YRAF+A P L+ G A+ G NML +LL++ + + +FD Sbjct: 1 MLVDGSSYVYRAFHALPPLTNSK-GQATGAVKGVINMLRRLLKDYPESPVVG----VFDA 55 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 TFR+++YP+YKANRP +P+ L Q+ + +A G+P + ++G EADD+I T Sbjct: 56 KGKTFRDDLYPEYKANRPSMPDELREQIVPIHSIVRAMGLPFLCVEGVEADDVIGTLARQ 115 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 A ++G +V I + DKD+ QLV T L +T+ + +D V +K+GIPP ++ AL G Sbjct: 116 ASEQGRSVVISTGDKDMAQLVDKHTTLVNTMTDTVMDEAGVEQKFGIPPSLIIDFLALMG 175 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETAR 241 D +DNIPG+ G+G KTA LLQ G+L++I + ++ + K + A Sbjct: 176 DKVDNIPGVAGVGEKTALGLLQGIGSLDDIYASLDKVAELSFRGAKTMAPKLEAEKANAY 235 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 +S +L ++TDV + E L + + L+ + +EF Sbjct: 236 MSYELATIKTDVELDQRPEALANAEPDREALVEWYTQMEF 275 >gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna Polymerase I Complexed With DTMP gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna Polymerase I Complexed With Deoxynucleoside Triphosphate And Pyrophosphate Length = 605 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 250/617 (40%), Positives = 381/617 (61%), Gaps = 20/617 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 2 ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAYI 60 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 V ++D S++ L LK E+E LK+G N+KYD+ +L YGI Sbjct: 61 PVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I+ + Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID +L Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T+ + L Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGRL+S + Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F DI Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ YF Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+QG+AA Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---TR 586 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 587 LDVPLLVEVGSGENWDQ 603 >gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74] Length = 605 Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust. Identities = 250/617 (40%), Positives = 381/617 (61%), Gaps = 20/617 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 2 ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAYI 60 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 V ++D S++ L LK E+E LK+G N+KYD+ +L YGI Sbjct: 61 PVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I+ + Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNPLTFNQIALEEA 171 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID +L Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T+ + L Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGRL+S + Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F DI Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ YF Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+QG+AA Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---TR 586 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 587 LDVPLLVEVGSGENWDQ 603 >gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] Length = 908 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 329/979 (33%), Positives = 505/979 (51%), Gaps = 85/979 (8%) Query: 6 HLFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L+L+D + I+R ++ PLL+ + G VNA GF L+ ++ KE H Sbjct: 3 ELYLIDALNIIFRNYHVMKNYPLLNTQ--GENVNAFIGFFKTLFFII----KEKNPEHLI 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR + YP YKA R P+ L+PQ+ ++ IP E++G+EADD++A Sbjct: 57 ITFDSEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMV 180 ++ A K + IIS DKDL+Q +S + ++D E+V KK+G+ ++ Sbjct: 117 SFAKKAAKNNYLTYIISPDKDLLQTMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 A+ GD DNIPGI GIG K AA LL+E+ L+ I N I KK RE +++ E A Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEII-NKKHRELLIKEKENA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS +LV L ++ I +E+ L++ +IS + LI TY D E Sbjct: 236 FLSYELVSLEENLKIP-EIENFALKNF-SEEIISLFEKHSAIALI----KTYKKDILKQE 289 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 EN +DQ S E T L ++ Sbjct: 290 K--------EN-----------------------ADQKSLFKQEPTTN-----SLDDINT 313 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 N Y I ++ ++ L+ S T ++D + +K I I+IS Sbjct: 314 IDTENVKYRSITTKIELDDLIESLKKAKYISIDTETSSLDTYTAKLIGISIS-------- 365 Query: 421 SFK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 FK E +I + ++ GK + K I+ F++ + IG N K+D +L Sbjct: 366 -FKEFEGYYIPI------EAKGKIYIEKNYIIQKFNNLFKSNPKI-IGQNYKFDYKILKN 417 Query: 479 YGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 G + + + D M+ +Y++D+ S + +A+K+L + + + + IS Sbjct: 418 NGFNPIPPYFDTMIAAYLIDTN-SKVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEM 476 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ E++++ +L+ + KL +KL + ++ P V+ +ME GI +D++ LK+ Sbjct: 477 ATSYSSEDADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKE 536 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQ 655 E+ K L ++E I G FNL+SPKQ+ +ILF KL K P K + K Sbjct: 537 YGKELGKELEAIENEIIKSIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLES 596 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 EQ I+N++++RQ++K+KSTY D+L IN +T R+HT + T TGR+ S Sbjct: 597 LREQHES-----IENLIKYRQIAKLKSTYTDNLIELINYKTNRLHTSFIQTKTATGRITS 651 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 + PNLQNIPIK + G+KIR+AF ISADYSQIEL ILAH+++ L + FEN+ Sbjct: 652 INPNLQNIPIKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNK 711 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+++F + ++++P +RR AK+INF IIY +S FRLA +L I + EA +I Y Sbjct: 712 DIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKGFINSY 771 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I E+I NFV+ GY ETI RR + EINS R+ ER AIN+ IQGS Sbjct: 772 FDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAERIAINSIIQGS 831 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V + K+ +K+LLQ+HDE++ E P EE +I+ ME A + Sbjct: 832 AADIMKIAMVKVFNEFKSKKMESKILLQVHDEMLIESPIEEENEVKKILKIMMETAYI-- 889 Query: 956 INLRVPLKVNIKVSNNWQE 974 L +PL+ NI+ +W E Sbjct: 890 --LNLPLRANIETGKSWGE 906 >gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] Length = 985 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 324/1023 (31%), Positives = 518/1023 (50%), Gaps = 94/1023 (9%) Query: 2 QKENHLFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES 56 QK+ L LVDG S +R+FYA L+ K +GLP + GF L LL N R S Sbjct: 5 QKKPTLLLVDGHSLAFRSFYAFSKGGEGGLATK-EGLPTSVTYGF---LKSLLDNCRAIS 60 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQA-FGIPAIEIQGF 115 + FD P TFR++ P+YKANR P + L +++ + + G+ Sbjct: 61 -PQGITIAFDTPEPTFRHKTDPNYKANRDIAPPIFFQDLEQLQIILEKDLNLSICTAPGY 119 Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL---------YDTVKEEKIDIE 166 EADD++ T A G+ V I+S D+DL QLV + Y + E Sbjct: 120 EADDVLGTLANKAADNGWIVRILSGDRDLFQLVDDERNIAIMYMGGGPYGKSGNPTLINE 179 Query: 167 HVIK-KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225 +K K GI P K++ +ALTGDS DNIPG+ G+G KTA LL E +L+ + + ++ Sbjct: 180 AGVKTKLGIVPTKVIDFKALTGDSSDNIPGVKGVGPKTAINLLNENKDLDGVFASLELLE 239 Query: 226 QKKRRE-----------NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS 274 + + + + + A LSR L + +VPI PL L + N L + Sbjct: 240 SQGEKAYKGAIKGALKAKLKQGKDNAYLSRHLAEILVEVPIE-PLPSFKLSEINRENLEN 298 Query: 275 FLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL 334 L+ LE L+ ++ + T G + + K+S SS Sbjct: 299 SLQKLELNSLVRQMPAF--------------VATFSPGGFSAHK---KTINTKSSNTSSK 341 Query: 335 SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKI 394 + Q N E P + E + + I+N+S ++ I+ +Q + I + Sbjct: 342 NQQ----NRENLPDEK--EGIPTIMPQIISNNSELSVL----IENLLQLDDPIQPVAIDT 391 Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454 T +++ F S+ + I + ++ + ++ + I + Q S + L +++ L Sbjct: 392 ETTSLNPFQSELVGIGLCWGERPEQIAY-IPLGHITEDLFEDQSSNLQLPLI-DVIKGLS 449 Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL 513 + + K+ N KYD+L+ +YGI + G D +L Y+ D H + ++A++ Sbjct: 450 PWLGSSEHPKVLQNAKYDRLIFLQYGIPLEGVIMDTLLADYLCDV-THRHSLEAMAKREF 508 Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYER 571 +T + +S S + + + +L+ L + L + +KL+ + E+ Sbjct: 509 GFTPTNFNEIVGKDETFKNVSISTASLYCGMDVYLTRKLYFLKKSNLEEMGQKLIELLEK 568 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 +++P+ +++ ME GI+ID LK++S E++K L ++E++ Y ++ FNLSSPKQLG+ Sbjct: 569 VEQPLEPILADMEARGIRIDIPYLKELSIELNKALKNIEKSAYKIAKTDFNLSSPKQLGE 628 Query: 632 ILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689 +LF +L +TKTG W T A LE++ GDNPI+ ++E R LSK+ STY ++LP Sbjct: 629 VLFEQLGLDKKKSRRTKTG-WSTDANVLERLQ-GDNPIVPLVIEHRTLSKLLSTYVEALP 686 Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 + +T RVHT ++ A T TGRL+S PNLQNIPI+T+ ++IR+AF+ +L+SAD Sbjct: 687 QLVEAQTGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPREGWQLLSAD 746 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELRILAH++ L + + N D+H + A + ++ E ++ RR KTINF +I Sbjct: 747 YSQIELRILAHLSGEASLQEAYRNGDDVHALTAKIL--LDKESITSNERRLGKTINFGVI 804 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YG+ R A + +SEA D++ RY R+ + Y+E + G+VETI GRR H+ Sbjct: 805 YGMGVQRFARSTGVSQSEAKDFLNRYKERYTNVFSYLELQERLALSKGFVETILGRRRHF 864 Query: 870 D---------------EIN---SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911 EI+ + ++ + RAA NAPIQGS+ADI + AM+ + K L Sbjct: 865 HFDKNGLGRLLGKNPLEIDLKLARRAGMEAQQLRAAANAPIQGSSADIIKVAMVKLDKEL 924 Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 ++ L +LLQ+HDELV EV +++H+MEKA L L VPL V V N Sbjct: 925 KNEGLPANLLLQVHDELVLEVDPTATEQVKALVIHTMEKAVL----LNVPLVVEASVGKN 980 Query: 972 WQE 974 W + Sbjct: 981 WMD 983 >gi|333014001|gb|EGK33362.1| DNA polymerase I domain protein [Shigella flexneri K-227] Length = 605 Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust. Identities = 249/617 (40%), Positives = 379/617 (61%), Gaps = 20/617 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 2 ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAYI 60 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 V ++D S + L LK E+E LK+G N+KYD+ +L YGI Sbjct: 61 PVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I+ + Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID +L Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T+ + L Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGRL+S + Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F DI Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ YF Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ER AINAP+QG+AA Sbjct: 471 RYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERTAINAPMQGTAA 530 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---TR 586 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 587 LDVPLLVEVGSGENWDQ 603 >gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] Length = 930 Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust. Identities = 253/619 (40%), Positives = 380/619 (61%), Gaps = 24/619 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 ++ + Y I++ + W+ KL+ +F TD++D + + + SF Sbjct: 327 LSAEHYVTILDEATLLTWIDKLKQAPLFAFDTETDSLDNISANMVGL-----------SF 375 Query: 423 KVETIFIDLSVHTSQDS-TGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 VE + V + D + + +E +L+ LK E+E LK+G N+KYD+ +L Y Sbjct: 376 AVEP-GVAAYVPVAHDYLDAPDQIPRERVLTLLKPLLEDEKVLKVGQNLKYDRGILANYD 434 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536 I +RG D ML SY+LDS HD+ S++ +WL + T +EI K+ + ++I+ Sbjct: 435 IELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQIALE 494 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + +A E+++V LQL L + PKL E L++++ ++ P++ V+S++E G++ID +L Sbjct: 495 EAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVL 554 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 S EI++ L+ LE+ ++++GE FNLSS KQL ILF K KT G T+ + Sbjct: 555 HAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEE 614 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGRL+S Sbjct: 615 VLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSS 673 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 674 TDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGK 733 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA Y+ Y Sbjct: 734 DIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLY 793 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+QG+ Sbjct: 794 FERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPMQGT 853 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI +RAMI+V + L K +M++Q+HDELVFEV ++E+ S+ I ME + Sbjct: 854 AADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENST--- 910 Query: 956 INLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 911 -TLAVPLLVEVGSGENWDQ 928 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 161/291 (55%), Gaps = 11/291 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H V Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQP----THAVV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AE+ G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I + K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAELSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + A LS +L ++TDV + + E L ++ L++ + EF + V Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELQVQPPAADDLLALFRQYEFKRWTTDV 291 >gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] Length = 912 Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust. Identities = 230/611 (37%), Positives = 370/611 (60%), Gaps = 19/611 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y + + W+++LE+ +F + T +++ ++ + +A++ E Sbjct: 313 YHTVDDADAFDDWLRRLESAELFAFDLETSSLNYMDAEIVGVALAV--------GAGEAA 364 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ L+ H D+ + + +L+ LK E+ K+G N+KYD VL RY I + G Sbjct: 365 YVPLA-HEGPDTPTQLDRDR-VLAALKPLLEDPDRAKVGQNLKYDMSVLARYDIHLEGVA 422 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D ML SYVLDS S HD+ S+A K+L +++ IP +++ +A Sbjct: 423 YDTMLESYVLDSTASRHDMDSLALKYLGRATVKYEDVCGKGAKQIPFAQVAVETATRYAG 482 Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ L+L L P+L E +L+ V+ ++ P++ V+S+ME G+++D+ LL+Q S E+ Sbjct: 483 EDADITLRLHQTLYPRLEAEGRLVQVFHAIEMPLLPVLSRMERHGVKVDRALLEQQSTEL 542 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 ++ + +LE+ ++ + FNLSSPKQ+ +ILF ++ P KT G T LE++ Sbjct: 543 AEGMAALEQRAHEEAEGPFNLSSPKQIQEILFERMGLPVLQKTPKGAPSTAESVLEELAA 602 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 + + IL +R L+K+K+TY D LP I+ +T RVHT Y A TGRL+S +PNLQN Sbjct: 603 RGYELPRLILAYRSLAKLKTTYTDKLPRLIHPKTGRVHTSYHQAVAATGRLSSSDPNLQN 662 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR+AF++ P KL++ADYSQ+ELRI+AH++ L Q F DIH A Sbjct: 663 IPVRTAEGRRIRKAFVAEPGCKLLAADYSQVELRIMAHLSGDEGLRQAFAEGADIHSATA 722 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FG+ E+V + RR AK INF +IYG+S + LA QL I R EA Y+ RYF R+PG+ Sbjct: 723 AEVFGLAPERVGGEQRRAAKAINFGLIYGMSAYGLARQLGIERGEAQAYVDRYFERYPGV 782 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 EY+++T+ R+ GYVET+FGRR++ EIN+ R ER AINAP+QG+AAD+ +R Sbjct: 783 KEYMDRTRAEARERGYVETLFGRRLYLPEINARNRQRREYAERTAINAPMQGTAADLIKR 842 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AM++V L + +M++Q+HDELV EVP ++ ++ + M+ A L VPL Sbjct: 843 AMVAVDAWLTEAHSKARMVMQVHDELVLEVPAADVPAVAEGLRERMQAAG----ELAVPL 898 Query: 963 KVNIKVSNNWQ 973 +V++ V+++W+ Sbjct: 899 EVDVGVADDWE 909 Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 110/282 (39%), Positives = 168/282 (59%), Gaps = 6/282 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ K DG P A+ G NM+ KLL + R E IA V+FD Sbjct: 8 LILVDGSSYLYRAFHAMPPLTNK-DGEPTGAMYGVLNMVRKLLDDYRPERIA----VVFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+E++ YKA+RP +P+ L Q+ ++ +A G+P +E+ G EADD+I T Sbjct: 63 APGRTFRDELFDQYKAHRPPMPDELRAQIQPLKDIIRAMGLPLLEVPGVEADDVIGTLAR 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + G V I + DKD+ QLV L +T+ + ++D V +K+G+PPE+++ AL Sbjct: 123 QAAEAGQPVVISTGDKDMAQLVDEQVTLLNTMNDTRLDEAGVKEKFGVPPERIIDYLALV 182 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPG+P +G KTAA L ++G+L+ + A +K K E++ + + LS L Sbjct: 183 GDSSDNIPGVPRVGPKTAAKWLNQFGSLDALKARADEVKGKV-GESLRAHLDELALSEDL 241 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +R D+ + E L + + RL + + EF +L+ + Sbjct: 242 ATIRCDLDLDQRPEDLKPGESDVERLREYYQRYEFRRLLREL 283 >gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 930 Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust. Identities = 253/619 (40%), Positives = 380/619 (61%), Gaps = 24/619 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 ++ + Y I++ + W+ KL+ +F TD++D + + + SF Sbjct: 327 LSAEHYVTILDEATLLTWIDKLKQAPLFAFDTETDSLDNISANMVGL-----------SF 375 Query: 423 KVETIFIDLSVHTSQDS-TGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 VE + V + D + + +E +L+ LK E+E LK+G N+KYD+ +L Y Sbjct: 376 AVEP-GVAAYVPVAHDYLDAPDQIPRERVLALLKPLLEDEKVLKVGQNLKYDRGILANYD 434 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536 I +RG D ML SY+LDS HD+ S++ +WL + T +EI K+ + ++I+ Sbjct: 435 IELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQIALE 494 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + +A E+++V LQL L + PKL E L++++ ++ P++ V+S++E G++ID +L Sbjct: 495 EAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVL 554 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 S EI++ L+ LE+ ++++GE FNLSS KQL ILF K KT G T+ + Sbjct: 555 HAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEE 614 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGRL+S Sbjct: 615 VLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSS 673 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 674 TDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGK 733 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA Y+ Y Sbjct: 734 DIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLY 793 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+QG+ Sbjct: 794 FERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPMQGT 853 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI +RAMI+V + L K +M++Q+HDELVFEV ++E+ S+ I ME + Sbjct: 854 AADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELNAVSKKIHELMENST--- 910 Query: 956 INLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 911 -TLAVPLLVEVGSGENWDQ 928 Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 161/291 (55%), Gaps = 11/291 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H V Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQP----THAVV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AE+ G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I + K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAELSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + A LS +L ++TDV + + E L ++ L++ + EF + V Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELEVQPPAADDLLALFRQYEFKRWTTDV 291 >gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 927 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 253/619 (40%), Positives = 380/619 (61%), Gaps = 24/619 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 ++ + Y I++ + W+ KL+ +F TD++D + + + SF Sbjct: 324 LSAEHYVTILDEATLLTWIDKLKQAPLFAFDTETDSLDNISANMVGL-----------SF 372 Query: 423 KVETIFIDLSVHTSQDS-TGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 VE + V + D + + +E +L+ LK E+E LK+G N+KYD+ +L Y Sbjct: 373 AVEP-GVAAYVPVAHDYLDAPDQIPRERVLALLKPLLEDEKVLKVGQNLKYDRGILANYD 431 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536 I +RG D ML SY+LDS HD+ S++ +WL + T +EI K+ + ++I+ Sbjct: 432 IELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQIALE 491 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + +A E+++V LQL L + PKL E L++++ ++ P++ V+S++E G++ID +L Sbjct: 492 EAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVL 551 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 S EI++ L+ LE+ ++++GE FNLSS KQL ILF K KT G T+ + Sbjct: 552 HAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEE 611 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGRL+S Sbjct: 612 VLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSS 670 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 671 TDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGK 730 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA Y+ Y Sbjct: 731 DIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLY 790 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+QG+ Sbjct: 791 FERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPMQGT 850 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI +RAMI+V + L K +M++Q+HDELVFEV ++E+ S+ I ME + Sbjct: 851 AADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENST--- 907 Query: 956 INLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 908 -TLAVPLLVEVGSGENWDQ 925 Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 161/291 (55%), Gaps = 11/291 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H V Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQP----THAVV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AE+ G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I + K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAELSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + A LS +L ++TDV + + E L ++ L++ + EF + V Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELEVQPPAADDLLALFRQYEFKRWTTDV 291 >gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815] gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815] Length = 915 Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust. Identities = 249/612 (40%), Positives = 364/612 (59%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y + + W++K++ SF T ++D ++ + I+I+ ++ V Sbjct: 318 YDTVQTWEQFDAWLEKIDHAEITSFDTETTSLDPMVAQIVGISIA-VEAGKAAYIPVAHH 376 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 D V +D E+L+ LK + E+ K+G ++KYD+ VL YGI+M G E Sbjct: 377 GPDAPVQLPRD---------EVLAKLKPWLESRDKKKVGQHLKYDEQVLANYGITMDGIE 427 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R HD+ ++A + L +++ S I D+++ + E+A Sbjct: 428 HDTLLQSYVLESHRP-HDMDNLALRHLGLKTIKYEDVAGKGASQIGFDEVALDKASEYAA 486 Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ L+L L P++ E L HVY ++ P V+ +ME G+ ID + L+ S EI Sbjct: 487 EDADITLRLHQTLYPQIASEVPLDHVYRNIEVPTSRVLRKMERNGVLIDVEKLRVQSNEI 546 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE YDL+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 547 ATRLVELERQAYDLAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKL-A 605 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K ILE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 606 EDYPLPKTILEHRGLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVAVTGRLASNDPNLQN 665 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+PP KL+SADYSQIELRI+AHI+ L + F+ DIHR A Sbjct: 666 IPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDEALLRAFKQGEDIHRATA 725 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +E+F V +VS RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 726 SEVFSVTPLEVSNDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARYPGV 785 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+E T+ + GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 786 AAYMENTRTSAKMKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 845 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V K +E+ + T+M++Q+HDELV EVP++E++ + + M L+VPL Sbjct: 846 SMIAVQKWIEESGIRTRMIMQVHDELVLEVPDDELSDVRKRLPELMCGVA----QLKVPL 901 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 902 VAEVGAGANWEE 913 Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 106/256 (41%), Positives = 154/256 (60%), Gaps = 9/256 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R DG P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGIINMLRRM----RKEVTAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ YP YKANRP +P+ L Q+ + +A ++ G P + I G EADD+I T Sbjct: 67 AKGKTFRDDWYPQYKANRPSMPDDLARQIEPIHVAVRSLGWPLLMIDGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE G V + + DKDL QLV+ L +T+ EK+D E V+ K+G+PPE++V +L Sbjct: 127 RAEARGMNVIVSTGDKDLAQLVTDHVTLINTMTNEKLDREGVVAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L ++G L+ I+ +A IK +N+ ++RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAIKWLTQFGTLDGIVAHADEIKGAV-GDNLRRALHFLPMARKL 245 Query: 247 VMLRTDVPITIPLEHL 262 V + TD +T EH+ Sbjct: 246 VTVETDCDLT---EHV 258 >gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044] gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 930 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 253/619 (40%), Positives = 380/619 (61%), Gaps = 24/619 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 ++ + Y I++ + W+ KL+ +F TD++D + + + SF Sbjct: 327 LSAEHYVTILDEATLLTWIDKLKQAPLFAFDTETDSLDNISANMVGL-----------SF 375 Query: 423 KVETIFIDLSVHTSQDS-TGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 VE + V + D + + +E +L+ LK E+E LK+G N+KYD+ +L Y Sbjct: 376 AVEP-GVAAYVPVAHDYLDAPDQIPRERVLTLLKPLLEDEKVLKVGQNLKYDRGILANYD 434 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536 I +RG D ML SY+LDS HD+ S++ +WL + T +EI K+ + ++I+ Sbjct: 435 IELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQIALE 494 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + +A E+++V LQL L + PKL E L++++ ++ P++ V+S++E G++ID +L Sbjct: 495 EAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVL 554 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 S EI++ L+ LE+ ++++GE FNLSS KQL ILF K KT G T+ + Sbjct: 555 HAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEE 614 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGRL+S Sbjct: 615 VLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSS 673 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 674 TDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGK 733 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA Y+ Y Sbjct: 734 DIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLY 793 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+QG+ Sbjct: 794 FERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPMQGT 853 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI +RAMI+V + L K +M++Q+HDELVFEV ++E+ S+ I ME + Sbjct: 854 AADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENST--- 910 Query: 956 INLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 911 -TLAVPLLVEVGSGENWDQ 928 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 161/291 (55%), Gaps = 11/291 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H V Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQP----THAVV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AE+ G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVTKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I + K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAELSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + A LS +L ++TDV + + E L ++ L++ + EF + V Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELEVQPPAADDLLALFRQYEFKRWTTDV 291 >gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1] gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1] Length = 904 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 231/613 (37%), Positives = 369/613 (60%), Gaps = 19/613 (3%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y +++ + W+++L + S + T++++ ++ + ++++ + ++ Sbjct: 304 AYEVVLDDHGLAAWMERLRNADAFSIDLETNSLNYMDAEIVGVSLAV--EPGQAAY---- 357 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 L V +L L+ E E K+G N+KYD VL RYGI +RG Sbjct: 358 ----LPVAHCGPGAPDQLDRDRVLDALRPLLEAEQPEKMGQNLKYDMSVLARYGIELRGV 413 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHA 542 D ML SYVLDS + HD+ S+A K+L + +++ +P +I + +A Sbjct: 414 AYDSMLESYVLDSTATRHDMDSLASKYLGVEVTSYEQLCGKGVRQVPFAEIDVERAGHYA 473 Query: 543 IENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ L+L LL P+L E LL V+ +L+ P++ V+S+ME G+++D DLL++ S E Sbjct: 474 AEDADIALRLHQLLYPRLQAESGLLRVFSQLEMPLLPVLSRMERHGVRVDCDLLERQSEE 533 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 ++ + +E+ ++ +GE FNL SPKQ+ +I F ++ P +T GQ T LE+++ Sbjct: 534 LAGRMAEVEQRAHEEAGEAFNLGSPKQIQEIFFERMGLPVIQRTPKGQPSTAESVLEELS 593 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 + + + ILE R LSK+KSTY D LP I++ T RVHT Y A TGRL+S +PNLQ Sbjct: 594 ARGHELPRLILEHRGLSKLKSTYTDKLPQLIHRDTGRVHTSYHQAVAATGRLSSSDPNLQ 653 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR+AF++ P +LI+ADYSQ+ELRI+AH++ L + FE DIHR Sbjct: 654 NIPVRTPEGRRIRKAFVASPGHRLITADYSQVELRIMAHLSGDEGLRRAFEQGEDIHRAT 713 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+F + +V+ + RR AK INF +IYG+S + L QL IPR EA YI RYF R+PG Sbjct: 714 AAEVFAAD--EVNDEQRRAAKAINFGLIYGMSAWGLGRQLGIPRDEAQTYIDRYFERYPG 771 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + ++++ + R+ GYVET+FGRR+H EI+S R ER AINAP+QG+AAD+ + Sbjct: 772 VRAFMDRAREQAREQGYVETVFGRRLHVPEIHSRNRQRREYAERTAINAPMQGTAADVIK 831 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 RAMI V L + +++++Q+HDELV EVPE + T + ME + ++ VP Sbjct: 832 RAMIDVDALLNERFPESRLVMQVHDELVLEVPEAQATAVGDEVRRLMEGSDRGMVS--VP 889 Query: 962 LKVNIKVSNNWQE 974 L+V + V ++W++ Sbjct: 890 LEVELGVGDDWEQ 902 Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 106/262 (40%), Positives = 156/262 (59%), Gaps = 9/262 (3%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 Q ++ L LVDGSS++YRAF+A P L+ +G P A+ G NML KLL E + F Sbjct: 3 QPDDRLVLVDGSSYLYRAFHALPALTNA-NGEPTGALYGVVNMLHKLL----AEEPEARF 57 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 AV+FD P TFR+E++ YKA+RP +P+ L Q ++ A G+P +E+ G EADD+I Sbjct: 58 AVVFDAPGKTFRDELFEQYKAHRPPMPDELRAQREPLKAIIAALGVPVLEVPGVEADDVI 117 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T +A + V I +TDKD+ QLV L +T+ ++D E V +K+G+PPE + Sbjct: 118 GT---LAARASGPVLISTTDKDMAQLVDEQVTLLNTMSGTRLDPEGVREKFGVPPELIRD 174 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD+ DNIPG+P +G KTAA L YG+L+ + A I+ K E++ + + Sbjct: 175 YLALVGDTSDNIPGVPKVGPKTAAKWLNAYGSLDALREQADEIRGKV-GESLRAHLDELP 233 Query: 242 LSRKLVMLRTDVPITIPLEHLI 263 LS LV +R D+ + + E L+ Sbjct: 234 LSVDLVTIRCDLALEVAPEDLV 255 >gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34] gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus metallidurans CH34] Length = 934 Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust. Identities = 242/616 (39%), Positives = 369/616 (59%), Gaps = 24/616 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y + + +W++K+ + T ++D ++ + I++S Sbjct: 332 YETVTTEAALDEWLRKIADAPIVAIDTETTSLDPMLAQLVGISLSVEPGA--------AA 383 Query: 428 FIDLSVHTSQDSTG---KNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 +I ++ H D G L++E +L ++ + E+ K+G ++KYD V +G+++ Sbjct: 384 YIPVA-HRGPDVAGLENHGQLSREYVLERMRGWLEDPARPKLGQHLKYDSHVFANHGVAL 442 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQ 539 RG D ML SYVL S R+ H + S+A++ LS T +E+ + I D+I + Sbjct: 443 RGIAHDTMLESYVLASYRN-HGMDSLAERLLSLKTITYEEVCGKGANQIGFDQIDLPRAT 501 Query: 540 EHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 E+A E+++V L+L ++P+L E L +VYE+++ P+ V+ ++E G+ ID D L Sbjct: 502 EYAAEDADVTLRLHRKMQPQLEASEGLKYVYEQIEIPVSVVLQKIERNGVLIDADRLAAQ 561 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 SAE+ ++ LE +D +G+ FNL SPKQ+G+ILF ++K P KT +G T + L+ Sbjct: 562 SAELGLRMMDLERAAHDAAGQPFNLGSPKQIGEILFNQMKLPVVKKTASGAPSTDEEVLQ 621 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ D P+ K +L++R LSK+KSTY D LP +N T RVHT Y A+ +TGRLAS +P Sbjct: 622 KL-ADDYPLPKLLLDYRGLSKLKSTYTDKLPKMVNPNTGRVHTSYGQATAVTGRLASTDP 680 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIP++T+ G++IR AFI+ P ++SADYSQIELRI+AHI+ L + F N DIH Sbjct: 681 NLQNIPVRTEEGRRIREAFIAAPGNVIVSADYSQIELRIMAHISGDENLLRAFANGEDIH 740 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R A EIFGV E VS + RR+AK INF +IYG+S F LA+ L I R A YI RYF R Sbjct: 741 RATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIEREAAKHYIDRYFMR 800 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ Y+E+T+ R+ GYVET+FGRR+ +IN R ERAAINAP+QG+AAD Sbjct: 801 YPGVAHYMEQTRQTAREQGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQGTAAD 860 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 + + +MI+V LE +L T+ ++Q+HDELV EVP+ E+ +++ + + L Sbjct: 861 LIKLSMIAVQDWLEGERLGTRQIMQVHDELVLEVPQAEL----ELVRVKLPELMCAVATL 916 Query: 959 RVPLKVNIKVSNNWQE 974 VPL + NW+E Sbjct: 917 NVPLVAEVGSGANWEE 932 Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 113/282 (40%), Positives = 168/282 (59%), Gaps = 17/282 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R +GLP AI G NML KL R + A + A +FD Sbjct: 8 LLLVDGSSYLYRAYHALPDL-RNGEGLPTGAIYGMINMLRKL----RNDYPAQYIACVFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++YP YK +RP +PE L Q+ + A +A G P + ++G EADD+I T Sbjct: 63 AKGKTFRDDMYPAYKEHRPSMPEDLAKQIEPIHEAVRALGWPIVVVEGVEADDVIGTLAL 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G + + DKDL QLV+ T L +T+ E +D V+ K+G+PPE++V +L Sbjct: 123 QASQQGVNTVVSTGDKDLAQLVNDTVTLVNTMSGEVLDPPGVVAKFGVPPERIVDYLSLI 182 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEYAETARLSR 244 GD++DN+PG+P +G KTA L EYG L++I+ NA +IK + N LE+ A R Sbjct: 183 GDAVDNVPGVPKVGPKTAVKWLTEYGTLDDIMGNAEKIKGVVGENLRNTLEWLPRA---R 239 Query: 245 KLVMLRTDVPITIPLE-----HLILEDCNGPRLISFLKALEF 281 +LV ++TD ++ + H + ED +LI+F + F Sbjct: 240 ELVTVKTDCDLSGAVADFQALHDLGEDKE--KLIAFFQRYGF 279 >gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] Length = 908 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 308/978 (31%), Positives = 493/978 (50%), Gaps = 108/978 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG+S +RAFYA P + K GL NA+ GF ML LL++ + +H A F Sbjct: 22 LMLLDGNSLAFRAFYALPAENFKTQSGLTTNAVYGFTAMLINLLRDEQP----THIAAAF 77 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR + YP+YK R P+ Q+ + + A GI + GFEADDIIAT Sbjct: 78 DVSRQTFRKDKYPEYKEGRSATPDEFRGQIDITKEVLGALGITVLAEPGFEADDIIATLA 137 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 AE+EG+ V +++ D+D +QLVS T LY V E + + V++K+G+ P++ Sbjct: 138 TQAEQEGYRVLVVTGDRDSLQLVSDQVTVLYPRKGVSELTRFTPDAVVEKYGLTPQQYPD 197 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238 AL GD DN+PGIPG+G KTA + EYG+L+ ++ N +K K R N+ Sbjct: 198 FAALRGDPSDNLPGIPGVGEKTATKWIVEYGSLQALVDNVDAVKGKVGDALRANL----S 253 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 + L+R+L L DVP+ + L ++ N ++ LEF L +R+ T Sbjct: 254 SVILNRELTDLIRDVPLPQTPDTLRMQPWNRDQIHRLFDDLEFRVLRDRLFETL------ 307 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 +A+E E++ ++ Sbjct: 308 ---------------VAVEPEVEHGFDVRG------------------------------ 322 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 + + ++ W+ + ++GS + T A+ + A+AI D Sbjct: 323 -----------RALEPGELAAWLSE-HSLGSRFGVAVVGTHKAYDADATALAIVAADG-- 368 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 + +ID S TLT E + L + + K H K L Sbjct: 369 ------DGRYIDTS-----------TLTPEDEAALASWLADPGPPKALHEAKLAMHDLAG 411 Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKIS-D 535 G ++RG D L +Y++ G+ S + +A ++L R E + ++ S+ D D Sbjct: 412 RGWTLRGVTSDTALAAYLVRPGQRSFTLDDLAVRYLHRELRAETPEQQQLSLLDDSDGVD 471 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 Q + I + +L L L +L L + R++ P+ +++ME GI +D +L Sbjct: 472 EQAVQTVILRACAVLDLADALDQELARIDSLSLLSRMELPVQRTLAEMEHAGIAVDLGML 531 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 +Q+ +E + + E Y + G++ NL SPKQL +LF +L+ P KTKTG Sbjct: 532 EQLQSEFADQIRDAAEAAYSVIGKQINLGSPKQLQAVLFDELEMPKTKKTKTGYTTDADA 591 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 +P ++++L R +++K T D L N + R+HT ++ TGRL+S Sbjct: 592 LQSLFEKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAS-DGRIHTTFNQTIAATGRLSS 649 Query: 716 LEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 EPNLQNIPI+T+ G++IR AF+ +L++ADYSQIE+RI+AH+++ L + F Sbjct: 650 TEPNLQNIPIRTEAGRRIRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTG 709 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 D+H VA+ F V I++V+P++RR K +++ + YG+S + LA QL+I EA +++ Sbjct: 710 EDLHSFVASRAFSVPIDEVTPELRRRVKAMSYGLAYGLSAYGLAQQLKISTEEAKVQMEQ 769 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF RF G+ +Y+ + R++GY T+ GRR + E++S +R ERAA+NAPIQG Sbjct: 770 YFDRFGGVRDYLRDVVDQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQG 829 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 SAADI + AMI+V ++++D L +++LLQ+HDEL+FEV E E Q++ M A Sbjct: 830 SAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGEQGELEQLVREHMGNAY-- 887 Query: 955 KINLRVPLKVNIKVSNNW 972 L VPL+V++ +W Sbjct: 888 --PLDVPLEVSVGYGRSW 903 >gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210] Length = 622 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 247/616 (40%), Positives = 368/616 (59%), Gaps = 27/616 (4%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425 +Y + + W+ K+ +F T ++D ++ + + SF VE Sbjct: 24 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGL-----------SFSVEP 72 Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 ++ ++ H D + + E+L+ L + E+ K+G ++KYD VL YGI++ Sbjct: 73 GHAAYVPVA-HRGPDMPAQ-LPSDEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIAL 130 Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 G E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q Sbjct: 131 NGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQAS 189 Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 E+A E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + Sbjct: 190 EYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQ 249 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S EI+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+ Sbjct: 250 SGEIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQ 309 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +P Sbjct: 310 KL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDP 368 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIH Sbjct: 369 NLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIH 428 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R Sbjct: 429 RATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLR 488 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD Sbjct: 489 YPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAAD 548 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 + + +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L Sbjct: 549 LIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKL 604 Query: 959 RVPLKVNIKVSNNWQE 974 +VPL + V NW+E Sbjct: 605 KVPLVAEVGVGENWEE 620 >gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b] gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b] Length = 923 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 247/616 (40%), Positives = 368/616 (59%), Gaps = 27/616 (4%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425 +Y + + W+ K+ +F T ++D ++ + + SF VE Sbjct: 325 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGL-----------SFSVEP 373 Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 ++ ++ H D + + E+L+ L + E+ K+G ++KYD VL YGI++ Sbjct: 374 GHAAYVPVA-HRGPDMPAQ-LPSDEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIAL 431 Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 G E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q Sbjct: 432 NGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQAS 490 Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 E+A E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + Sbjct: 491 EYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQ 550 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S EI+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+ Sbjct: 551 SGEIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQ 610 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +P Sbjct: 611 KL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDP 669 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIH Sbjct: 670 NLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIH 729 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R Sbjct: 730 RATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLR 789 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD Sbjct: 790 YPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAAD 849 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 + + +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L Sbjct: 850 LIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKL 905 Query: 959 RVPLKVNIKVSNNWQE 974 +VPL + V NW+E Sbjct: 906 KVPLVAEVGVGENWEE 921 Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V +L Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668] gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668] Length = 923 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 245/613 (39%), Positives = 365/613 (59%), Gaps = 21/613 (3%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + + W+ K+ +F T ++D ++ + ++ S ++ V Sbjct: 325 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 383 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 434 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 553 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 554 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 673 NIPVRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 909 LVAEVGVGENWEE 921 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V +L Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLMQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T] gi|332997589|gb|EGK17204.1| DNA polymerase I domain protein [Shigella flexneri VA-6] Length = 605 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 250/617 (40%), Positives = 380/617 (61%), Gaps = 20/617 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 2 ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPGVAAYI 60 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 V ++D S + L LK E+E LK+G N+KYD+ +L YGI Sbjct: 61 PVAHDYLDAPDQISHERA---------LELLKPLLEDEKALKVGQNLKYDRGILANYGIE 111 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I+ + Sbjct: 112 LRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEA 171 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID +L Sbjct: 172 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 231 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T+ + L Sbjct: 232 HSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVL 291 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGRL+S + Sbjct: 292 EELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTD 350 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F DI Sbjct: 351 PNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDI 410 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Y+ YF Sbjct: 411 HRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFE 470 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+QG+AA Sbjct: 471 RYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAA 530 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + + C Sbjct: 531 DIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLMENC---TR 586 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 587 LDVPLLVEVGSGENWDQ 603 >gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894] Length = 625 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 245/613 (39%), Positives = 365/613 (59%), Gaps = 21/613 (3%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + + W+ K+ +F T ++D ++ + ++ S ++ V Sbjct: 27 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 85 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G Sbjct: 86 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 136 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 137 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 195 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 196 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGE 255 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 256 IATRLVTLEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 314 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 315 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 374 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 375 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 434 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 435 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 494 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 495 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 554 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 555 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 610 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 611 LVAEVGVGENWEE 623 >gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] Length = 933 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 240/614 (39%), Positives = 358/614 (58%), Gaps = 17/614 (2%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y + + ++ W+ + G + TD +DA + + I+++ K Sbjct: 332 YETVTTVEALEPWLTEARKAGLFAMDTETDGLDAQQCRLVGISLAIAPGK--------AC 383 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRGF 486 +I L T+ D + EI + L + LKI N K+D VL R+ + + Sbjct: 384 YIPLDHQTTLDQPVRQPAIAEIAAALNPILADPTVLKIFQNGKFDLAVLRRHQMPVIAPI 443 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 +D ML+SY ++G H + ++ L ++ ++ + ++ +P ++ + +A Sbjct: 444 DDTMLISYAQEAGAHGHGMDELSVLHLGHSPISYDQVTGTGRNRLPFPQVPIDKATAYAA 503 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 E+++V L+LW LRP+L K L VYE++++P++ V+ ME GI++D+ L+++SA+ + Sbjct: 504 EDADVTLRLWHALRPRLRETKSLTVYEQMERPLVPVLCAMEAAGIRVDEAELRRMSADFA 563 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NC 662 + +E I+ L+G FNL+SPKQLG++LF ++ ++KTG W T A L+ I + Sbjct: 564 LRMADMETEIHQLAGRPFNLASPKQLGEVLFDEIGLTGSKRSKTGAWGTDAATLQAIADE 623 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 + + IL+WRQL+K+KSTYAD+L +N RT RVHT + +A T TGRL+S EPNLQN Sbjct: 624 SGHALPARILDWRQLAKLKSTYADALVEDVNPRTGRVHTSFQMAITTTGRLSSNEPNLQN 683 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IPI+T+ G +IRRAFI+ P LISADYSQIELR+LAH+A I L F N DIH A Sbjct: 684 IPIRTEEGSRIRRAFIADPGHVLISADYSQIELRLLAHVADIPQLKDSFANGEDIHARTA 743 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +E+FGV ++ + RR AK INF IIYGIS F LA L I EA YI YF R+PGI Sbjct: 744 SEVFGVPMQGMDSLTRRRAKAINFGIIYGISAFGLARSLAISPGEARQYIDAYFARYPGI 803 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y+E+TK R NG+V T FGRR I + R ER AINAP+QG AADI +R Sbjct: 804 RDYMERTKEEARINGFVVTPFGRRCWVPGIADRNPARRGYAERQAINAPLQGGAADIIKR 863 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AM+ + L D+ T+MLLQ+HDEL+FE PE E ++++ +M+ A + VPL Sbjct: 864 AMVRLPAVLADNSFQTRMLLQVHDELLFEAPEAEAEAVARLVTTTMQDAA----RISVPL 919 Query: 963 KVNIKVSNNWQEEN 976 V + NW E + Sbjct: 920 VVETGIGTNWGEAH 933 Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 137/289 (47%), Positives = 192/289 (66%), Gaps = 5/289 (1%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + HL L+DGS FI+RAF+A P ++R DG PVNA+ GF NML + L K+ + +H Sbjct: 11 LPDSTHLILIDGSGFIFRAFHALPPMTRP-DGTPVNAVFGFTNMLARFL----KDHVGTH 65 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AVIFD TFRN +YP YKA+RP+ P L+PQ L+R AT AFG+PAIE+ +EADD+ Sbjct: 66 LAVIFDAGRTTFRNRLYPAYKAHRPEPPPELIPQFALIREATAAFGVPAIELADWEADDL 125 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IA+Y A G VTI+S+DKDLMQL+ P + D +K++ I V++K+G+ PEKM+ Sbjct: 126 IASYARAAVTRGGRVTIVSSDKDLMQLIQPGVEMQDPIKQKTIGPAEVMEKFGVTPEKMI 185 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +QAL GDS+DN+PG+PGIG KTAA L+ EYG+L+ +L +K KRR+N++ +AE A Sbjct: 186 DVQALMGDSVDNVPGVPGIGPKTAAQLINEYGDLDGVLAALETMKPSKRRDNLVAHAEDA 245 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 R+SR+LV L D P+ +P+ L + + L +L A F R+ Sbjct: 246 RISRQLVALSQDAPLPVPITDLSVRQPDAAVLQDWLNAQGFRSTAARLG 294 >gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a] gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a] Length = 923 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 247/616 (40%), Positives = 368/616 (59%), Gaps = 27/616 (4%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425 +Y + + W+ K+ +F T ++D ++ + + SF VE Sbjct: 325 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGL-----------SFSVEP 373 Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 ++ ++ H D + + E+L+ L + E+ K+G ++KYD VL YGI++ Sbjct: 374 GHAAYVPVA-HRGPDMPAQ-LPSDEVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIAL 431 Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 G E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q Sbjct: 432 NGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQAS 490 Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 E+A E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + Sbjct: 491 EYAAEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQ 550 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S EI+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+ Sbjct: 551 SGEIATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQ 610 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +P Sbjct: 611 KL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDP 669 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIH Sbjct: 670 NLQNIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIH 729 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R Sbjct: 730 RATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLR 789 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD Sbjct: 790 YPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAAD 849 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 + + +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L Sbjct: 850 LIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKL 905 Query: 959 RVPLKVNIKVSNNWQE 974 +VPL + V NW+E Sbjct: 906 KVPLVAEVGVGENWEE 921 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V +L Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177] gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] Length = 923 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 245/613 (39%), Positives = 365/613 (59%), Gaps = 21/613 (3%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + + W+ K+ +F T ++D ++ + ++ S ++ V Sbjct: 325 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 383 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 434 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 553 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 554 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 673 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 909 LVAEVGVGENWEE 921 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V +L Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305] gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305] Length = 923 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 245/613 (39%), Positives = 365/613 (59%), Gaps = 21/613 (3%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + + W+ K+ +F T ++D ++ + ++ S ++ V Sbjct: 325 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAEIVGLSFS-VEPGHAAYVPVAH 383 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 434 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 553 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 554 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 673 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 909 LVAEVGVGENWEE 921 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V +L Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] Length = 894 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 237/623 (38%), Positives = 369/623 (59%), Gaps = 29/623 (4%) Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 S P+ ++Y IV+ +++ + + LE + T ++D ++ + +++ + Sbjct: 286 SADPVRRENYRAIVHREELARLLATLEQTERVAIDTETSSLDPHAAELVGFSLAWFEGD- 344 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 + +++ L GK L+ L + E+ K+ N K+D + Sbjct: 345 ----RTRAVYVPLG-----HREGKQIPRDVALALLGPWLEDGSKAKLAQNAKFDWQIFWA 395 Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534 G+ RG D +L SYVLDS ++HD+ S+A+++L + + E+ + + + Sbjct: 396 QGLRPRGLARDTLLESYVLDS-TAAHDLDSLAERYLQHRNISYAELTGKGRQARSFAAVD 454 Query: 535 DSQVQEHAIENSNVIL----QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 + +A E++ V L Q+W +R E L V+ ++ P+++V+++ME G++I Sbjct: 455 IASATAYAAEDAEVCLRVDAQMWPQIRRH---EGLARVFRDIEMPLVEVLARMEWAGVRI 511 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D D+LK++S E+ + ++E + +G++FNL+SPKQ+ ILF K+ P KT GQ Sbjct: 512 DVDVLKRLSEELDTRMATVESEAFAAAGQRFNLNSPKQIQTILFDKMGLPVLKKTPGGQP 571 Query: 651 KTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T L ++ D P + IL++R L+K+K+TYAD+LP I +RT RVHT Y A Sbjct: 572 STNEDVLAELAKQADLP--RLILDYRGLAKLKNTYADALPQMIQERTGRVHTHYHQAVAA 629 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIP+++DLG++IR+AF++ P LISADYSQIELRI+AH++ L Q Sbjct: 630 TGRLSSSDPNLQNIPVRSDLGRRIRQAFVAEPGHLLISADYSQIELRIMAHLSGDAGLRQ 689 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F LDIHR AAE+F + +E+V+P+ RR AK INF +IYG +P+ LA QL + + EA Sbjct: 690 AFARGLDIHRATAAEVFAIPLEQVTPEQRRAAKAINFGLIYGQTPYGLAQQLGVGQGEAK 749 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 Y++RYF R+PG+ EY+E T+ RQ GYVET+FGRR++ EI S + RN ERAAIN Sbjct: 750 AYMERYFERYPGVREYMENTRRLARQQGYVETLFGRRLYLPEIRSQNPARRNYAERAAIN 809 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AAD+ + AMI+V L +MLLQ+HDEL+ EVPE+ + A Q++ ME Sbjct: 810 APMQGTAADLIKLAMIAVDAWLLAQTDHGRMLLQVHDELILEVPEKAVDAACQMLREKME 869 Query: 950 KACLPKINLRVPLKVNIKVSNNW 972 L VPL V + V NW Sbjct: 870 GVA----ELAVPLTVGLGVGANW 888 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 104/248 (41%), Positives = 142/248 (57%), Gaps = 7/248 (2%) Query: 8 FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 LVD SSF+YRAF+A P L R DGLP AI G NML +L ++E S V+FD Sbjct: 7 ILVDASSFLYRAFHALPDL-RAPDGLPTGAILGVANMLRRL----QREYPQSEIIVVFDA 61 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 P TFR+ ++ YKA RP +PE + Q+ L+ +A G+ + + G EADD+I T Sbjct: 62 PGKTFRDALFDQYKAQRPPMPEEMRAQVELLHQWVRAMGLRLLVVPGVEADDVIGTLARA 121 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 + V I + DKDL QLV T L DT+K + D+ V ++G+ P ++ AL G Sbjct: 122 TPVQ-TPVIIATGDKDLTQLVDEHTTLMDTMKGTRTDLAEVRARFGVEPTQIADYLALVG 180 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247 D +DNIPG+PG G KT A LQ+YG+L+ IL + I K E++ AE SR+L Sbjct: 181 DKVDNIPGVPGAGPKTVAKWLQQYGDLDGILAHGQEIPGKV-GESLRAVAEILPRSRELA 239 Query: 248 MLRTDVPI 255 +R DV I Sbjct: 240 RIRCDVEI 247 >gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] Length = 976 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 330/1026 (32%), Positives = 531/1026 (51%), Gaps = 122/1026 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIAS 59 L LVDG S +R+FYA S+ DG P + GF L LL N +K S A Sbjct: 13 LLLVDGHSLAFRSFYA---FSKGVDGGLTTKEGFPTSVTYGF---LKSLLDNCKKVS-AE 65 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEAD 118 + FD TFR+E+ P+YKANR P++ + + + ++ +P + GFEAD Sbjct: 66 GVCITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILKESLNLPIFKSPGFEAD 125 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHV 168 D++ T A +G+ V I+S D+DL QLV +Y + ++ V Sbjct: 126 DLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNENGV 185 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILINA 221 +K G+ P+++V L+ALTGDS DNIPGI G+G KTA LL+E Y L+ I N Sbjct: 186 KEKLGVYPDRVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYKTLDIIQKNE 245 Query: 222 SRIKQKKRRENILEYAET----ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277 + Q + ++E + A LSR L + +VP+ + L + N L LK Sbjct: 246 DKKYQGFIKGAVMEKLKNDKFNAYLSRNLAKIDVEVPLVLN-NGYELNEINQDSLSESLK 304 Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337 LE + L+ +V N+ +KG F+ +++ Sbjct: 305 KLELSTLLRQVDI---------------FNSAFSKG----------------GFNKNNEE 333 Query: 338 TSK-INSEQTPQKLFLERLQKLSQYPINNDSYTKIVN-TKDIQQWVQKLE-TIGSASFKI 394 K S+ +P E KL + +N IVN ++ + Q V++LE T + Sbjct: 334 KHKDKESKDSPSTDLEEIENKLPKIKVN------IVNDSESLDQLVKRLEITKEIVALDT 387 Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLK 454 T++++ ++ + I ++ +D +I L H SQ +++ L+ Sbjct: 388 ETNSLNPLDAELVGIGFCLGEESNDL------FYIPLG-HQSQKDEMNQLAIEDVFLNLR 440 Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL 513 + E+ K N K+D+ + + +G+++ G D +L Y+L++ + H ++ I + Sbjct: 441 TWIESPEKEKTLQNCKFDRQIFYNHGLNLSGVTFDTLLADYILNN-QEKHGLSEICFREF 499 Query: 514 SY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHV 568 + + KE + K +D I+ + + + + + ++ + + + EK L + Sbjct: 500 GFKPPSFKETVGKNKDFSFVD-INHASI--YCGYDVFLTYKIAKIFKERFRKEKKELTKL 556 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 ++ ++ P+ V+S ME++GI ID L ++S E+ L ++EEN+++++ ++FNLSSPKQ Sbjct: 557 FKEIELPLEQVLSGMEMSGISIDITYLNELSRELKSTLANIEENVFEIAKQEFNLSSPKQ 616 Query: 629 LGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 LG+ILF KL KTKTG W T A LE++ ++ II +++ R LSK+ STY D Sbjct: 617 LGEILFDKLNLDKKKSRKTKTG-WSTDAVVLERL-VEEHEIIPYLIKHRTLSKLLSTYID 674 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 +LPN INK+T RVHT ++ A+T TGRL+S PNLQNIP++T+ ++IR+AF+ KL+ Sbjct: 675 ALPNLINKKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKGWKLL 734 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 SADYSQIELRILAH+A L F + DIH + A IF + ++ RR KTINF Sbjct: 735 SADYSQIELRILAHLANEEILITAFHQNDDIHSLTARLIF--EKKDINSDERRVGKTINF 792 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 +IYG+ + A + +EA +++ +Y R+ I +++E + GYVETIFGR+ Sbjct: 793 GVIYGMGIKKFARSTGVSTTEAKEFLIKYKKRYAKIFKFLELQERLALSKGYVETIFGRK 852 Query: 867 IHY------------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908 + D + K+ + + RAA NAPIQGS+ADI + AM+ ++ Sbjct: 853 REFKFDKNGLGRLIGKEPYEIDLQTARKAGMEAQSLRAAANAPIQGSSADIIKIAMVQLN 912 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 K L + + KMLLQ+HDEL+FEV + + Q++ +ME + L+VPL V+I V Sbjct: 913 KKLLEMNIPVKMLLQVHDELLFEVKPDFLEITKQLVKETMEDC----VKLKVPLLVDIGV 968 Query: 969 SNNWQE 974 NNW E Sbjct: 969 GNNWME 974 >gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91] Length = 622 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 245/613 (39%), Positives = 365/613 (59%), Gaps = 21/613 (3%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + + W+ K+ +F T ++D ++ + ++ S ++ V Sbjct: 24 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAEIVGLSFS-VEPGHAAYVPVAH 82 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G Sbjct: 83 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 133 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 134 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 192 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 193 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 252 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 253 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 311 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 312 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 371 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 372 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 431 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 432 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 491 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 492 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 551 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 552 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 607 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 608 LVAEVGVGENWEE 620 >gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229] gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247] gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH] gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU] gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247] gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH] gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU] gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229] Length = 926 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 245/613 (39%), Positives = 365/613 (59%), Gaps = 21/613 (3%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + + W+ K+ +F T ++D ++ + ++ S ++ V Sbjct: 328 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAEIVGLSFS-VEPGHAAYVPVAH 386 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G Sbjct: 387 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 437 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 438 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 496 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 497 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 556 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 557 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 615 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 616 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 675 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 676 NIPVRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 735 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 736 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 795 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 796 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 855 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 856 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 911 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 912 LVAEVGVGENWEE 924 Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V +L Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGGV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] Length = 911 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 234/517 (45%), Positives = 341/517 (65%), Gaps = 11/517 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519 K+G N+KYDK VL G + G + D ML SYVL+S + HD+ S+A K+L + + ++ Sbjct: 398 KVGQNLKYDKSVLANAGYQLNGIKFDTMLESYVLNSVGTRHDMDSLALKFLGHKNISFED 457 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMID 578 I K + +++ + +A E++++ L+L +L PKL EKL V+E ++ P+++ Sbjct: 458 IAGKGKKQLTFNQVELDKAGPYAAEDADITLRLHQVLWPKLAADEKLKSVFEDIEMPLVN 517 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V+S +E TG+ ID +L S + + LL LE+ Y+++GE FNLSSPKQL +LF KL+ Sbjct: 518 VISDIERTGVAIDSKMLAAHSQRLGERLLELEKEAYEIAGEPFNLSSPKQLQVLLFEKLE 577 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P KT G +TA+++ Q D P+ K I+E R LSK+KSTY D LP +N++TQR Sbjct: 578 LPIIKKTPKGA-PSTAEEVLQELAHDYPLPKVIIEHRGLSKLKSTYTDKLPLMVNEKTQR 636 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 VHT Y A T TGRL+S +PNLQNIPI+++ G++IR AFI+ K+++ADYSQIELRI+ Sbjct: 637 VHTSYHQAVTATGRLSSTDPNLQNIPIRSEEGRRIREAFIAADGYKIVAADYSQIELRIM 696 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH+++ L F N LD+H AAE+FGV++E+V+ MRR AK +NF +IYG+S F LA Sbjct: 697 AHLSQDKGLLSAFANGLDVHSATAAEVFGVSLEEVTSDMRRKAKAVNFGLIYGMSAFGLA 756 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL +PR EA YI +YF RFPG+ EY+E T+ ++GYVETIFGRR++ EI + + Sbjct: 757 RQLDVPRHEAQHYIDKYFERFPGVLEYMETTREKAAESGYVETIFGRRLYLPEIKAQNGA 816 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEI 937 R ERAAINAP+QG+AADI ++AM+SVH + + T K+L+Q+HDELVFE+ + + Sbjct: 817 RRKGAERAAINAPMQGTAADIIKKAMLSVHSWVYEQAPNTVKLLMQVHDELVFEIKTDCV 876 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ I M +A L VPL V +NW++ Sbjct: 877 DAYTKHICELMSQAA----TLDVPLIVEADEGDNWEQ 909 Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 118/334 (35%), Positives = 182/334 (54%), Gaps = 12/334 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS+++RA+++ P L+ G AI G NML L+ ++ SH V Sbjct: 6 ENPLILVDGSSYLFRAYHSPPHLTNSK-GEATGAIYGVINMLKSLI----RQYDPSHMVV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFRN++Y +YKANRP +P+ L Q+ + +A G P I I+G EADD+I T Sbjct: 61 IFDAKGKTFRNDMYSEYKANRPPMPDDLRTQIAPIHRIIKAMGFPLISIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + IA ++ V + + DKD+ QLV+ L +T+ + D V++K+G+ PE ++ Sbjct: 121 FARIASEQKRHVLVSTGDKDMAQLVNEHVTLINTMTDSISDPVTVVEKFGVGPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD +DNIPG+ G G KTA L++YG+L+ ++ NAS IK K E + + LS Sbjct: 181 ALMGDKVDNIPGVEGCGPKTAVKWLEKYGSLQGVMDNASEIK-GKIGEKLAAALDHLPLS 239 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 +L ++ DV + L+ L++ N LI+ EF + + + D Sbjct: 240 YQLATIKCDVEVESDLDTFKLQEPNKDELIALYGECEFRRWLAEL-----LDNPKDTETH 294 Query: 304 LDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337 L + T N+ + E +T + SQF +L +Q Sbjct: 295 LAVPTEANE-VPKVAEAQYETILTESQFDALIEQ 327 >gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55] gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55] Length = 930 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 252/619 (40%), Positives = 380/619 (61%), Gaps = 24/619 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 ++ + Y I++ + W+ KL+ +F TD++D + + + SF Sbjct: 327 LSAEHYVTILDEATLVTWIDKLKQAPLFAFDTETDSLDNISANMVGL-----------SF 375 Query: 423 KVETIFIDLSVHTSQDS-TGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 VE + V + D + + +E +L+ LK E+E LK+G N+KYD+ +L Y Sbjct: 376 AVEP-GVAAYVPVAHDYLDAPDQIPRERVLALLKPLLEDEKLLKVGQNLKYDRGILANYD 434 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536 I +RG D ML SY+LDS HD+ S++ +WL + T +EI K+ + ++I+ Sbjct: 435 IELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQIALE 494 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + +A E+++V LQL L + PKL E L++++ ++ P++ V+S++E G++ID +L Sbjct: 495 EAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVL 554 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 S EI++ L+ LE+ ++++GE FNLSS KQL ILF K KT G T+ + Sbjct: 555 HAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEE 614 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGRL+S Sbjct: 615 VLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSS 673 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 674 TDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFSEGK 733 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA Y+ Y Sbjct: 734 DIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLY 793 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+QG+ Sbjct: 794 FERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPMQGT 853 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI +RAMI+V + L + +M++Q+HDELVFEV ++E+ S+ I ME + Sbjct: 854 AADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENST--- 910 Query: 956 INLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 911 -TLAVPLLVEVGSGENWDQ 928 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 160/291 (54%), Gaps = 11/291 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H V Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQP----THAVV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AE+ G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVSKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAALSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + A LS +L ++TDV + + E L ++ L++ + EF + V Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELEVQPPAADDLLALFRQYEFKRWTTDV 291 >gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13] gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13] Length = 923 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 245/613 (39%), Positives = 365/613 (59%), Gaps = 21/613 (3%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + + W+ K+ +F T ++D ++ + ++ S ++ V Sbjct: 325 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 383 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 434 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGE 553 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 554 IATRLVTLEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 673 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 909 LVAEVGVGENWEE 921 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V +L Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] Length = 976 Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust. Identities = 323/1025 (31%), Positives = 531/1025 (51%), Gaps = 120/1025 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIAS 59 L LVDG S +R+FYA S+ DG P + GF L LL N + S Sbjct: 13 LLLVDGHSLAFRSFYA---FSKGIDGGLTTKEGFPTSVTYGF---LKSLLDNCKNIS-PQ 65 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEAD 118 + FD TFR+E+ P+YKANR P++ + + + ++ +P + G+EAD Sbjct: 66 GVGITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGYEAD 125 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHV 168 D++ T A +G+ V I+S D+DL QLV +Y + ++ V Sbjct: 126 DLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNENGV 185 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 +K G+ PE++V L+ALTGDS DNIPGI G+G KTA LL+E L+ I +I++ Sbjct: 186 KEKLGVAPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYQALDKIQKNN 245 Query: 229 RR-----------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277 + E + A LSR L + T+VP+ + L++ N L LK Sbjct: 246 DKKYKGFIKGSVIEKLRNDKHNAFLSRDLAKINTEVPLILS-NGYELKNINQELLSESLK 304 Query: 278 ALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQ 337 LE + L+ ++ N+T +KG D++ K Sbjct: 305 KLELSTLLRQIDI---------------FNSTFSKG-----GFDKNNVAK---------- 334 Query: 338 TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS-ASFKIIT 396 E+ P+ L+ S+ I + T + + + + + +Q+L+ S T Sbjct: 335 ----EEEKAPKVTGNNELEN-SENKIPKINVTVVNDFELLDKLIQRLDKTNQIVSLDTET 389 Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKK 455 ++++ ++ + I + ++ DD +I L T +++ N L+ E + S L+ Sbjct: 390 NSLNPIDAELVGIGLCLGEENDD------LFYIPLGHQTKKETP--NQLSIEYVFSKLRN 441 Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514 + E+ K N K+D+ + +G+ ++G D +L Y+L++ + H ++ I+ + Sbjct: 442 WIEDPKKEKALQNSKFDRQIFFNHGLILKGVTFDTLLADYLLNN-QEKHGLSEISFRLFG 500 Query: 515 Y---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHVY 569 + + KE + K +D I ++ + + + + ++ + + + EK L+ ++ Sbjct: 501 FKPPSFKETVGKNKDFSFVD-IDEASI--YCGYDVFLTFKIVKIFKERFSKEKDELIKLF 557 Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629 E ++ P+ V+SQME+ GI ID L ++S E+ L +E +Y+L+ E FNLSSPKQL Sbjct: 558 EEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAEENFNLSSPKQL 617 Query: 630 GDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 G+ILF KL KTKTG W T A LE++ ++ II+++++ R LSK+ STY D+ Sbjct: 618 GEILFEKLNLDKKKSRKTKTG-WSTDAVVLERL-VDEHEIIQHLIKHRTLSKLLSTYIDA 675 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747 LPN IN++T RVHT ++ A+T TGRL+S PNLQNIP++T+ ++IR+AF+ KL+S Sbjct: 676 LPNLINEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNCKLLS 735 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIELRILAH+A L F + DIH + A IF E++S RR KTINF Sbjct: 736 ADYSQIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEQISSDERRVGKTINFG 793 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 +IYG+ + A + EA +++ +Y R+ I +++E + GYV+TIFGR+ Sbjct: 794 VIYGMGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIFGRKR 853 Query: 868 HY------------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 + D ++ ++ + + RAA NAPIQGS+ADI + AM+ ++K Sbjct: 854 EFKFDKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNK 913 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 + + KMLLQ+HDEL+FEV ++ + ++++ +ME + L VPL V+I + Sbjct: 914 KFIEMNVPAKMLLQVHDELLFEVEQDSLEITTKLVKKTMEDC----VKLNVPLLVDIGIG 969 Query: 970 NNWQE 974 +NW E Sbjct: 970 DNWME 974 >gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109] gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109] Length = 986 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 340/1034 (32%), Positives = 528/1034 (51%), Gaps = 125/1034 (12%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L LVDG S +R+FYA L+ K DG P + GF L LL NS K Sbjct: 10 LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGRPTSVTYGF---LKALLDNS-KTLKPEGV 64 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120 A+ FD TFR++ +YKA+R PE+ L L ++ +P GFEADD+ Sbjct: 65 AIAFDTAEPTFRHKADANYKAHRDVAPEVFFQDLEQLQQILETHLQLPLCMAPGFEADDV 124 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170 + T A G+ V I+S D+DL QLV + LY + I E V+ Sbjct: 125 LGTLANRAADSGWGVRILSGDRDLFQLVDDSRDIAVLYMGGGPYAKSSGPTLIHEEGVLG 184 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILIN--- 220 K G+ P K+V L+ALTGDS DNIPG+ G+G KTA LL++ Y LE + Sbjct: 185 KLGVMPNKVVDLKALTGDSSDNIPGVRGVGPKTAINLLKDNSDLDAVYATLEQVEAEGPK 244 Query: 221 ASRIKQKKR-RENILEYAETARLSRKLVMLRTDVPI----TIPLEHLILEDCNGPRLISF 275 ASR K +E + + A LSRKL + DVP+ ++PL + D +G L S Sbjct: 245 ASRGAIKGALKEKLRADRDNAYLSRKLAEILVDVPLPKEPSLPLSSV---DADG--LSSC 299 Query: 276 LKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335 L+ LE L+ +V + + G E KT + S+ S Sbjct: 300 LEDLELNSLLRQVGSF--------------VAAFSEGGYGANAEA---AAAKTPRRSASS 342 Query: 336 DQ--TSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTK-DIQQWVQKLETIGSASF 392 +Q ++ T + + L L+ +++ T+ D+ VQ+L + Sbjct: 343 EQPAAEAASAAATQEDVGLPALKP------------QLIQTETDLDALVQRLMACTDSGL 390 Query: 393 KIITDT----MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448 + DT ++ F ++ + I I + D ++ I L ++DS+ + + Sbjct: 391 PVAFDTETTDLNPFRAELVGIGICWGETLDALAY------IPLGHKGNEDSSPEQLPLET 444 Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507 +L+ L + + + K N KYD+L+L R+G+++ G D +L Y+ D+ + H + Sbjct: 445 VLTALAPWLASSNHPKTLQNAKYDRLILLRHGVALEGVVIDTLLADYLRDAA-AKHGLEL 503 Query: 508 IAQKWLSY--TRKEILKSRK---SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-- 560 +A++ + T L +K + +P++ S + + +V +L LLLR +L Sbjct: 504 MAEREFGFQPTAFTDLVGKKQTFADVPLEPAS-----LYCGMDVHVTRRLALLLRHQLEA 558 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 + +L+ + E++++P+ V+++ME TGI+ID L+ +S E+ L LE + +G Sbjct: 559 MGPQLMPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEEMGSTLQQLESDAKAAAGVD 618 Query: 621 FNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 FNL+SPKQLG++LF L +TKTG + T A LE++ D+P++ +LE R LS Sbjct: 619 FNLASPKQLGELLFDTLGLDRKKSRRTKTG-FSTDATVLEKLG-NDHPVVPLVLEHRVLS 676 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 K+KSTY D+LP + T RVHT ++ A T TGRL+S PNLQNIP++T+ ++IR+AF+ Sbjct: 677 KLKSTYIDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFL 736 Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 L+SADYSQIELRIL H++ L + + + D+H + A + N +VSP R Sbjct: 737 PQEGWTLLSADYSQIELRILTHLSGEEVLQEAYRSGDDVHALTARLLLDKN--EVSPDER 794 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 R KTINF +IYG+ R A + + +SEA +++ RY R+P + ++E + GY Sbjct: 795 RLGKTINFGVIYGMGAQRFARETGVSQSEAKEFLARYKQRYPKVFAFLELQERLALSRGY 854 Query: 859 VETIFGRR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADIT 900 VETI GRR H+D EI+ + + + RAA NAPIQGS+ADI Sbjct: 855 VETILGRRRPFHFDRNGLGRLLGKAPLEIDLNVARRGGMEAQQLRAAANAPIQGSSADII 914 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 + AM+ + +L+ L ++LLQ+HDELV EV + +++V +ME+A + L V Sbjct: 915 KVAMVQLQDALQRQGLPAQLLLQVHDELVLEVAPNALDATRELVVQTMEQA----VALSV 970 Query: 961 PLKVNIKVSNNWQE 974 PL V V NW E Sbjct: 971 PLVVETGVGANWME 984 >gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22] gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22] Length = 930 Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust. Identities = 252/619 (40%), Positives = 380/619 (61%), Gaps = 24/619 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 ++ + Y I++ + W+ KL+ +F TD++D + + + SF Sbjct: 327 LSAEHYVTILDEATLVTWIDKLKQAPLFAFDTETDSLDNISANMVGL-----------SF 375 Query: 423 KVETIFIDLSVHTSQDS-TGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 VE + V + D + + +E +L+ LK E+E LK+G N+KYD+ +L Y Sbjct: 376 AVEP-GVAAYVPVAHDYLDAPDQIPRERVLALLKPLLEDEKLLKVGQNLKYDRGILANYD 434 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536 I +RG D ML SY+LDS HD+ S++ +WL + T +EI K+ + ++I+ Sbjct: 435 IELRGIAFDTMLESYILDSVAGRHDMDSLSDRWLKHKTITFEEIAGKGKNQLTFNQIALE 494 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + +A E+++V LQL L + PKL E L++++ ++ P++ V+S++E G++ID +L Sbjct: 495 EAGRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVL 554 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 S EI++ L+ LE+ ++++GE FNLSS KQL ILF K KT G T+ + Sbjct: 555 HAHSQEIAQRLVELEQRAHEIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEE 614 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T TGRL+S Sbjct: 615 VLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSS 673 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L F Sbjct: 674 TDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGK 733 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR AAE+FG+ ++ VS + RR AK INF +IYG+S F LA QL IPR EA Y+ Y Sbjct: 734 DIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLY 793 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAINAP+QG+ Sbjct: 794 FERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAGAERAAINAPMQGT 853 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI +RAMI+V + L + +M++Q+HDELVFEV ++E+ S+ I ME + Sbjct: 854 AADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVFEVHKDELDAVSKKIHELMENST--- 910 Query: 956 INLRVPLKVNIKVSNNWQE 974 L VPL V + NW + Sbjct: 911 -TLAVPLLVEVGSGENWDQ 928 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 160/291 (54%), Gaps = 11/291 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H V Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLILQYQP----THAVV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHKMVKAMGLPLMAVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AE+ G V I + DKD+ QLV+P L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAERAGRPVLISTGDKDMAQLVTPGITLINTMTNTILGPDEVVSKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAALSFRGAKTMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + A LS +L ++TDV + + E L ++ L++ + EF + V Sbjct: 241 DVAYLSYQLATIKTDVELELTCEELEVQPPAADDLLALFRQYEFKRWTTDV 291 >gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112] Length = 618 Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust. Identities = 250/613 (40%), Positives = 367/613 (59%), Gaps = 27/613 (4%) Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 N +Q W Q L TI +A +F T ++D ++ + ++ S ++ V Sbjct: 20 NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 78 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G Sbjct: 79 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 129 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 130 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 188 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 189 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 248 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 249 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 307 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 308 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 367 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 368 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 427 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 428 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 487 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 488 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 547 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 548 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 603 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 604 LVAEVGVGENWEE 616 >gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH] Length = 926 Score = 442 bits (1138), Expect = e-121, Method: Compositional matrix adjust. Identities = 246/612 (40%), Positives = 361/612 (58%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y + + W+ K+ +F T ++D ++ + ++ S ++ V Sbjct: 329 YMTVQTWEQFDAWLAKISAAELTAFDTETTSLDPMLAQIVGLSFS-VEPGHAAYVPVAHR 387 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G E Sbjct: 388 GPDMPAQLPRD---------EVLAKLTPWLEDASKKKLGQHLKYDAQVLANYGIALNGIE 438 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R+ HD+ S+A + L +++ I D++ Q E+A Sbjct: 439 HDTLLESYVLESHRT-HDMDSLALRHLGVRTIKYEDVAGKGAQQIGFDEVPLEQASEYAA 497 Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S+EI Sbjct: 498 EDADITLQLHHALYPQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDTDRLGRQSSEI 557 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 558 ATRLIELEQQAYGLAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL-A 616 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 617 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQN 676 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+PP K++SADYSQIELRI+AHI++ L + F N DIHR A Sbjct: 677 IPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFANGEDIHRATA 736 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 737 AEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPGV 796 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 797 ARYMEETRARAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 856 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V LE L +M++Q+HDELV EVPE E++ I+ + + L+VPL Sbjct: 857 SMIAVDDWLERGGLRARMIMQVHDELVLEVPEGELS----IVREKLPEMMCGVAKLKVPL 912 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 913 VAEVGAGENWEE 924 Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHSAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V +L Sbjct: 127 RAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|162149305|ref|YP_001603766.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] Length = 943 Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust. Identities = 240/634 (37%), Positives = 348/634 (54%), Gaps = 38/634 (5%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y + ++ WV + T G + TD +D + + I+++ + Sbjct: 323 YETVRTAGALETWVAEARTAGFCAIDTETDGLDPLRAGLVGISLAVAPGR--------AC 374 Query: 428 FIDLSVHTSQ---------------------DSTGKNTLTKEILSYLKKFFENEHFLKIG 466 +I L+ HT++ D G T L+ L + LKI Sbjct: 375 YIPLA-HTAEPPPPQLLPDLLLEPAPQDDAPDPVGPQLETGLALAILGPLLADASVLKIF 433 Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILK 522 N K+D LVL R G +D ML+SY +GR + +++ +L +T E+ Sbjct: 434 QNAKFDLLVLTRAGAPQPAPVDDTMLISYAQFAGRHGQGMDELSRLYLGHTPIPYDEVTG 493 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + ++ +P ++ ++ +A E+++V L+LWL LRP L + L +YE L++P++ V++ Sbjct: 494 TGRNRVPFARVDVARATAYAAEDADVTLRLWLSLRPTLRIHHALALYEELERPLVAVLAD 553 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI ID L+++SA+ + + +E I L+G FN+ SPKQLG+ILF ++ P G Sbjct: 554 MERAGIAIDVVELRRMSADFATRMAQMEAEIQALAGRSFNVGSPKQLGEILFDEMGLPGG 613 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 + K+G W T + L+ + + + IL WRQL+K+KSTYAD+L + T RVHT Sbjct: 614 KRMKSGAWGTDSSVLQDLADQGHDLPGRILAWRQLAKLKSTYADALVKQADPDTARVHTS 673 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 + +A T TGRL+S EPNLQNIPI+T+ G +IRRAF++ P L+SADYSQIELR+LAH+A Sbjct: 674 FQMAITSTGRLSSNEPNLQNIPIRTEEGGRIRRAFVAAPGHVLLSADYSQIELRLLAHVA 733 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 I L + F DIH A+E+FG+ IE + P RR AK INF IIYGIS F L QL Sbjct: 734 DIPALREAFALGQDIHARTASEVFGIPIEGMDPLTRRRAKAINFGIIYGISAFGLGRQLG 793 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IP EA YI YF R+PGI Y+E K + GYV T FGRR I + R Sbjct: 794 IPPGEARAYIDAYFARYPGIRAYMETVKQEAKDQGYVTTPFGRRCWVPGIADRSAVRRAY 853 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AINAP+QG AADI +RAM+ + +L L ++LLQ+HDEL+FEV + S Sbjct: 854 AERQAINAPLQGGAADIIKRAMVRLPHALASAGLDGRLLLQVHDELLFEVRAGQQDALSA 913 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 ++ ME A +L VPL V NW + + Sbjct: 914 LVKQVMESAA----SLSVPLVVETGTGANWADAH 943 Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 140/284 (49%), Positives = 195/284 (68%), Gaps = 5/284 (1%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 HL LVDGS FI+RAF+A P ++ DG PVNA+ GF NML +LL ++ + +H AVIF Sbjct: 8 HLILVDGSGFIFRAFHALPPMT-APDGTPVNAVFGFTNMLARLL----RDHVGTHLAVIF 62 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D VTFRN IY YKA+RP+ PE L PQ LVR AT AFG+P IE G+EADD+IA Y Sbjct: 63 DAGRVTFRNGIYDQYKAHRPEPPEELRPQFALVRDATAAFGVPGIEEAGWEADDLIAAYA 122 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 + G T++S+DKDLMQL+ P + D ++++ I + V K+G+ P+K++ +QAL Sbjct: 123 RLVTDAGGRCTVVSSDKDLMQLIRPGVEMLDPIRQKPIGPKEVEAKFGVTPDKVIDVQAL 182 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS+DN+PG+PGIG KTA+ L+ EYG+L+ IL A +K KRR++++E+AE ARLSR Sbjct: 183 IGDSVDNVPGVPGIGPKTASALIAEYGSLDAILDGAPAMKPSKRRDSLIEHAERARLSRV 242 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 LV LR D P + LE LI D + +L +L+++ F L++R+ Sbjct: 243 LVTLREDAPCPLGLEDLICRDPDEVKLGEWLQSMGFRSLLHRMG 286 >gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14] Length = 619 Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust. Identities = 250/613 (40%), Positives = 367/613 (59%), Gaps = 27/613 (4%) Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 N +Q W Q L TI +A +F T ++D ++ + ++ S ++ V Sbjct: 21 NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 79 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G Sbjct: 80 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 130 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 131 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 189 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 190 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 249 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 250 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 308 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 309 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 368 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 369 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 428 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 429 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 488 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 489 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 548 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 549 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 604 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 605 LVAEVGVGENWEE 617 >gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9] Length = 923 Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust. Identities = 250/613 (40%), Positives = 367/613 (59%), Gaps = 27/613 (4%) Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 N +Q W Q L TI +A +F T ++D ++ + ++ S ++ V Sbjct: 325 NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 383 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 434 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 553 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 554 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 673 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 909 LVAEVGVGENWEE 921 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V +L Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98] Length = 620 Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust. Identities = 250/613 (40%), Positives = 367/613 (59%), Gaps = 27/613 (4%) Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 N +Q W Q L TI +A +F T ++D ++ + ++ S ++ V Sbjct: 22 NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAEIVGLSFS-VEPGHAAYVPVAH 80 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G Sbjct: 81 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 131 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 132 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 190 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 191 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 250 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 251 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 309 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 310 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 369 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 370 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 429 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 430 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 489 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 490 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 549 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 550 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 605 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 606 LVAEVGVGENWEE 618 >gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] Length = 923 Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust. Identities = 250/613 (40%), Positives = 367/613 (59%), Gaps = 27/613 (4%) Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 N +Q W Q L TI +A +F T ++D ++ + ++ S ++ V Sbjct: 325 NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAEIVGLSFS-VEPGHAAYVPVAH 383 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 434 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 553 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 554 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 673 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 909 LVAEVGVGENWEE 921 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V +L Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] Length = 876 Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust. Identities = 250/613 (40%), Positives = 367/613 (59%), Gaps = 27/613 (4%) Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 N +Q W Q L TI +A +F T ++D ++ + ++ S ++ V Sbjct: 278 NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 336 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G Sbjct: 337 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 387 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 388 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 446 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 447 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 506 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 507 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 565 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 566 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 625 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 626 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 685 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 686 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 745 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 746 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 805 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 806 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 861 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 862 LVAEVGVGENWEE 874 Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 79/204 (38%), Positives = 124/204 (60%), Gaps = 1/204 (0%) Query: 48 LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107 +L+ RK+ A + A +FD TFR+++Y DYKA+RP +P L Q+ + A +A G Sbjct: 1 MLRRMRKDVSAEYSACVFDAKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGW 60 Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167 P + I+G EADD+I T AE+ G V + + DKDL QLV+ L +T+ E +D + Sbjct: 61 PLLMIEGVEADDVIGTLAKQAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDG 120 Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 V+ K+G+PPE++V +L GD++DN+PG+ G KTA L +YG+L+ ++ +A IK Sbjct: 121 VLAKFGVPPERIVDYLSLIGDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGV 180 Query: 228 KRRENILEYAETARLSRKLVMLRT 251 +N+ + L+RKLV + T Sbjct: 181 V-GDNLRRALDFLPLARKLVTVET 203 >gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e] gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e] Length = 923 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 250/613 (40%), Positives = 366/613 (59%), Gaps = 27/613 (4%) Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 N +Q W Q L TI +A +F T ++D ++ + ++ S ++ V Sbjct: 325 NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 383 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 434 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 553 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 554 IATRLVALEREAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 673 NIPVRTTEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 909 LVAEVGVGENWEE 921 Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V +L Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4] Length = 926 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 245/612 (40%), Positives = 361/612 (58%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y + + W+ K+ +F T ++D ++ + ++ S ++ V Sbjct: 329 YMTVQTWEQFDAWLAKISAAELTAFDTETTSLDPMLAQIVGLSFS-VEPGHAAYVPVAHR 387 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G E Sbjct: 388 GPDMPAQLPRD---------EVLAKLTPWLEDASKKKLGQHLKYDAQVLANYGIALNGIE 438 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R+ HD+ S+A + L +++ I D++ Q E+A Sbjct: 439 HDTLLESYVLESHRT-HDMDSLALRHLGVRTIKYEDVAGKGAQQIGFDEVPLEQASEYAA 497 Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S+EI Sbjct: 498 EDADITLQLHHALYPQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEI 557 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 558 ATRLIELEQQAYGLAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL-A 616 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 617 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQN 676 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+PP K++SADYSQIELRI+AHI++ L + F + DIHR A Sbjct: 677 IPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATA 736 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 737 AEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPGV 796 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 797 ARYMEETRARAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 856 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V LE L +M++Q+HDELV EVPE E++ I+ + + L+VPL Sbjct: 857 SMIAVDDWLERGGLRARMIMQVHDELVLEVPESELS----IVREKLPEMMCGVAKLKVPL 912 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 913 VAEVGAGENWEE 924 Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHSAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V +L Sbjct: 127 RAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|74318471|ref|YP_316211.1| DNA polymerase I [Thiobacillus denitrificans ATCC 25259] gi|74057966|gb|AAZ98406.1| DNA polymerase A [Thiobacillus denitrificans ATCC 25259] Length = 907 Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust. Identities = 236/613 (38%), Positives = 361/613 (58%), Gaps = 23/613 (3%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y I++ + WV ++ T + + + + + I +A + + E Sbjct: 309 GYEIILSEAQLDAWVARVATADAFALDVEASSASPLQCELIGLAFAVCEG--------EA 360 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 ++ L H + + +K E +G N+KY + VL GI++ G Sbjct: 361 AYLPLGHHYA--GAPAQLSRAAAFARIKPLLEERAAKIVGQNLKYARHVLANCGIALGGA 418 Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 +D +L SYVL++ H++AS+A + L E+ + I D+++ + E+A Sbjct: 419 ADDTLLQSYVLEA-HQPHELASLANRHLGLATLACDELTGKGAARIGFDQVAVERAGEYA 477 Query: 543 IENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E ++V L++ L ++ EKL +VY ++ P+ +V+ +ME G+ +D+ LL S E Sbjct: 478 AEQADVTLRVRGQLAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGE 537 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + + +L LE+ + +G+ FNL SPKQ+GDILF + P KT G T + LE + Sbjct: 538 LGRKMLELEQRAFQEAGQPFNLGSPKQIGDILFAQKGLPILKKTPGGAPSTDEETLELLA 597 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D+PI + IL++R L+K+KSTY D LP ++ T R+HT YS A+ +TGRLAS+EPNLQ Sbjct: 598 L-DHPIARAILDYRGLAKLKSTYTDKLPQMVHPLTGRLHTSYSQATAVTGRLASVEPNLQ 656 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP +T G++IR AFI+PP L+SADYSQIELRI+AH++ L F N LDIH Sbjct: 657 NIPARTAEGRRIREAFIAPPGHLLVSADYSQIELRIMAHLSDDAGLLHAFANDLDIHTAT 716 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV ++ VS + RR AK INF +IYG+S F LA+QL + RS A +I RYF R+PG Sbjct: 717 AAEVFGVPLDAVSAEQRRIAKVINFGLIYGMSAFGLASQLNLERSAAQAWIDRYFTRYPG 776 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+ +T+ R GYVET+FGRR++ EIN+ R ERAAINAP+QG+AAD+ + Sbjct: 777 VANYMLRTRESARAQGYVETVFGRRLYLPEINARNPQRRQGAERAAINAPMQGTAADLIK 836 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA-SQIIVHSMEKACLPKINLRV 960 AMI+V + ++ +L T++LLQ+HDEL+ EVPE E+ +++ H + A L+V Sbjct: 837 LAMIAVQRWIDSERLGTRLLLQVHDELILEVPEHELERVRAELPSHMCDVAA-----LKV 891 Query: 961 PLKVNIKVSNNWQ 973 PL+V + V NW+ Sbjct: 892 PLRVGVGVGGNWE 904 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 107/278 (38%), Positives = 159/278 (57%), Gaps = 10/278 (3%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 Q L LVDGSS++YRAF+A P L R G P +AI G ML +L RK+ A + Sbjct: 8 QPGKTLLLVDGSSYLYRAFHALPDL-RNAAGEPTSAIKGVLAMLHRL----RKDYAADYI 62 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 A +FD TFR+++YP YKANRP +P+ L Q+ + A +A G P + I G EADD+I Sbjct: 63 ACVFDAKGKTFRDDLYPAYKANRPAMPDDLRSQIEPLHEAIRAEGWPLVVIDGVEADDVI 122 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T A ++G + + DKD+ QLV L +T+ E +D V+ K+G+ P++++ Sbjct: 123 GTLVRHAAQKGIRSIVSTGDKDMAQLVDGHVTLVNTMSLETLDEAGVVAKFGVAPDRIID 182 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L GD++DN+PG+ G KTAA L EYG L+N+L +A +K EN+ + Sbjct: 183 YLTLVGDAVDNVPGVAKCGPKTAAKWLAEYGTLDNLLAHADAVKGAVG-ENLRAVVDWLP 241 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279 +R L+ ++TDV + + L+L+ PR I L+ L Sbjct: 242 QARALLTIKTDVALPFDFDDLVLK----PRDIDALRGL 275 >gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215] Length = 923 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 244/613 (39%), Positives = 364/613 (59%), Gaps = 21/613 (3%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + + W+ K+ +F T ++D ++ + ++ S ++ V Sbjct: 325 NYATVQTWEQFDAWLAKISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 383 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + + K+G ++KYD VL YGI++ G Sbjct: 384 RGPDMPAQLPRD---------EVLAKLTPWLGDAGKKKLGQHLKYDAQVLANYGIALNGI 434 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLAQASEYA 493 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGE 553 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 554 IATRLVTLEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 672 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 673 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 793 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 853 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 908 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 909 LVAEVGVGENWEE 921 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIVNMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHTAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V +L Sbjct: 127 QAEQRGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|289674485|ref|ZP_06495375.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5] Length = 780 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 291/855 (34%), Positives = 441/855 (51%), Gaps = 110/855 (12%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L R++ S AV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLATSK-GLPTGAVKGVLNMLKSL----RRQYPDSPLAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQE--------YGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA LL Y NL+ + R K + E+ E Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVASLPIR-GAKTLAAKLEEHRE 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ I L+ L C P Sbjct: 240 MAFLSYELATIKIDVPLDIELDQL---HCGEP---------------------------- 268 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTS---QFSSLSDQTSKINSEQTPQKLFLERL 355 DRDT ++ +F S + + ++++ Q+L +E Sbjct: 269 ----------------------DRDTLMELYAELEFKSWIEDLQR-DAKRAGQELTVEE- 304 Query: 356 QKLSQYPINND---SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 P D +Y I+ W++KL+ +F ++ DA ++ + + Sbjct: 305 ------PTVEDREAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLVGL--- 355 Query: 413 TLDQKDDTSFKVET---IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 SF ++T +I L+ S + +L LK E+ K+G + Sbjct: 356 --------SFAIQTHEAAYIPLT--HSYMGVPQQLDRDTVLKALKPLLEDPDKTKVGQHA 405 Query: 470 KYDKLVL--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517 K+ +L GI ++G D +L SYVLDS + HD S+ K+L++T Sbjct: 406 KFAINLLANCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINF 465 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPM 576 +EI + D+I+ Q +A E +++ L+L + +L + L V ++ P+ Sbjct: 466 QEIAGKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPL 525 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 + V++++E G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ K Sbjct: 526 VPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEK 585 Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 L P +KT TGQ T L ++ D P+ K ++++R +SK+KSTY D LP IN RT Sbjct: 586 LGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRT 645 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 R+HT Y A +TGRL+S +PNLQNIPI+T G++IR+AF++P KL++ADYSQIELR Sbjct: 646 GRIHTSYHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYKLLAADYSQIELR 705 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 I+AH+A+ L F N LD+HR AAE+FGV +E V+ MRR AK INF +IYG+S F Sbjct: 706 IMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFG 765 Query: 817 LATQLRIPRSEAADY 831 LA Q+ + R ++ Y Sbjct: 766 LAKQIGVDRKQSQAY 780 >gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002] gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002] Length = 913 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 250/612 (40%), Positives = 368/612 (60%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y + + + W+ K+ SF T ++D ++ + +++S + Sbjct: 316 YETVQTWEQLDAWLDKINAAELTSFDSETTSLDPMVAQIVGLSLSVEAGR--------AA 367 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ L+ H D+ E+L+ LK + E+ K+G ++KYD+ VL YGI MRG E Sbjct: 368 YVPLA-HRGPDAP-VQLPRDEVLAKLKPWLESADHKKVGQHLKYDEQVLANYGIEMRGVE 425 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R+ HD+ S+A + L +++ I D+++ + E+A Sbjct: 426 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVALDKAAEYAA 484 Query: 544 ENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ L+L L P++ VE L HVY ++ P V+ +ME TG+ ID + L+Q S EI Sbjct: 485 EDADITLRLHQALYPQIAVENSLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQSGEI 544 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE + Y+L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 545 ATRLIELEGSAYELAGGEFNLGSPKQIGQIFFEKLELPVIKKTPSGAPSTDEEVLQKL-A 603 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N RT RVHT Y+ A +TGRLAS +PNLQN Sbjct: 604 EDYPLPKILLEHRGLSKLKSTYTDKLPRMVNPRTGRVHTNYAQAVAVTGRLASNDPNLQN 663 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+PP KL+SADYSQIELRI+AHI+ L + F DIHR A Sbjct: 664 IPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLMRAFSQGEDIHRATA 723 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +EIF V +VS RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 724 SEIFNVTPLEVSSDQRRVAKVINFGLIYGMSAFGLASNLGITRDAAKMYIDRYFARYPGV 783 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+++T+ + GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 784 ARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKM 843 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V +ED K+ T+M++Q+HDEL+ EVP+ E++ + + M L+VPL Sbjct: 844 SMIAVQNWIEDSKIGTRMIMQVHDELILEVPDAELSEVRKRLPELMCGVA----ALKVPL 899 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 900 VAEVGAGLNWEE 911 Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 102/250 (40%), Positives = 151/250 (60%), Gaps = 6/250 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R +G P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPEGGPTGALYGMINMLRRM----RKEVTAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ YP+YKANRP +PE L Q+ + +A +A G P + I EADD+I T Sbjct: 67 AKGKTFRDDWYPEYKANRPSMPEDLARQIEPIHVAVRALGWPLLMIDRVEADDVIGTLCT 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AEK G V + + DKDL QLVS L +T+ E +D + V+ K+G+PPE+++ +L Sbjct: 127 EAEKLGMNVVVSTGDKDLAQLVSNRVTLVNTMTNETLDRDGVVAKFGVPPERIIDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y +L+ I+ +AS IK +N+ + ++RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLMQYESLDGIVEHASEIKGAV-GDNLRRALDFLPMARKL 245 Query: 247 VMLRTDVPIT 256 V + +T Sbjct: 246 VTVERHCDLT 255 >gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160] gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160] Length = 913 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 249/612 (40%), Positives = 369/612 (60%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y + + + W+ K+ SF T ++D ++ + +++S + Sbjct: 316 YETVQTWEQLDAWLDKINAAELTSFDTETTSLDPMIAQIVGLSLSVEAGR--------AA 367 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ L+ H D+ E+L+ LK + E+ K+G ++KYD+ VL YGI MRG E Sbjct: 368 YVPLA-HRGPDAP-VQLPRDEVLAKLKPWLESADHKKVGQHLKYDEQVLANYGIEMRGVE 425 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R+ HD+ S+A + L + +++ I D+++ + E+A Sbjct: 426 HDTLLESYVLESHRT-HDMDSLALRHLGEKTIKYEDVAGKGAQQIGFDEVALDKAAEYAA 484 Query: 544 ENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ L+L L P++ EK L HVY ++ P V+ +ME TG+ ID + L+Q S+EI Sbjct: 485 EDADITLRLHQALYPQIAAEKTLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQSSEI 544 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y+L+G +FNL SPKQ+G I F KL P KT +G T + L+++ Sbjct: 545 ATRLIQLEGEAYELAGGEFNLGSPKQIGQIFFEKLGLPVIKKTPSGAPSTDEEVLQKL-A 603 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N++T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 604 EDYPLPKVLLEHRGLSKLKSTYTDKLPRMVNRQTGRVHTNYAQAVAVTGRLASNDPNLQN 663 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+PP KL+SADYSQIELRI+AHI+ L + F DIHR A Sbjct: 664 IPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLMRAFSQGEDIHRATA 723 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +EIF V +VS RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 724 SEIFNVTPLEVSSDQRRVAKVINFGLIYGMSAFGLASNLGITRDAAKMYIDRYFARYPGV 783 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+++T+ + GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 784 ARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKM 843 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V +ED K+ T+M++Q+HDEL+ EVP+ E++ + + M L+VPL Sbjct: 844 SMIAVQNWIEDSKIGTRMIMQVHDELILEVPDAELSEVRKRLPELMCGVA----ALKVPL 899 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 900 VAEVGTGLNWEE 911 Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 105/257 (40%), Positives = 155/257 (60%), Gaps = 9/257 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R +G P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPEGGPTGALYGMINMLRRM----RKEVTAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ YP+YKANRP +PE L Q+ + +A +A G P + I+ EADD+I T Sbjct: 67 AKGKTFRDDWYPEYKANRPSMPEDLARQIEPIHVAVRALGWPLLMIERVEADDVIGTLCT 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AEK G V + + DKDL QLVS L +T+ E +D + V+ K+G+PPE+++ +L Sbjct: 127 EAEKLGMNVVVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVVAKFGVPPERIIDYLSLV 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y +L+ I+ +AS IK EN+ + ++RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYDSLDGIVEHASEIKGAV-GENLRRALDFMPMARKL 245 Query: 247 VMLRTDVPITIPLEHLI 263 V + + EHL+ Sbjct: 246 VTVERHCDLN---EHLV 259 >gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58] gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58] Length = 928 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 238/619 (38%), Positives = 369/619 (59%), Gaps = 22/619 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ Y +V + +W+ + G + TD +D + I+++ Sbjct: 319 IDRSLYETVVTQDALDRWIAAAQAEGVVAVDTETDMLDCVSCGLVGISLAVAPNA----- 373 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKE---ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 +I + H D + + +L+ LK E++ LK+G N+KYD VL R+ Sbjct: 374 ---ACYIPVG-HGGTDMFAERPAQLDKALVLAKLKPLLEDDAVLKVGQNLKYDMTVLRRH 429 Query: 480 GISMRGFEDIMLMSYVLDSGRS--SHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534 GI + ++D ++MS+ L++G+S H + A++ L + + K+++ + K+ I ++ Sbjct: 430 GIEVVPYDDTIVMSFDLEAGKSLSGHGMDEAARQHLGHECISFKDVVGTGKNQISFAEVP 489 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + E+A E+++V L+LW + ++ E VYE +D+P++ V+++ME GI++D++ Sbjct: 490 LPRATEYAAEDADVTLRLWKRFKARIANEGTNRVYELVDRPLVGVIAKMEHQGIKVDREA 549 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L ++SAE + + +LE I++++G+ F + S +QLG ILF K+ + G K K+G + T Sbjct: 550 LSRLSAEFTAGIAALETEIHEIAGQPFAIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDV 609 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LEQ+ PI +LEWRQLSK+KSTY D+L INK + RVHT YSL TGRL+ Sbjct: 610 TILEQLKAQGAPIAAKVLEWRQLSKLKSTYTDALQAQINKDSGRVHTSYSLTGAQTGRLS 669 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIPI+T++G++IR AF++ P +++ADYSQIELR+ AH+A + L + F Sbjct: 670 STDPNLQNIPIRTEVGRQIRHAFVAEPGHVILAADYSQIELRLAAHMADVPALKEAFAAG 729 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH A ++FG +V+ + R AKTINF+I+YGIS + LA +L I EA D I R Sbjct: 730 EDIHAATAEQLFG----EVNRETRGRAKTINFAILYGISRWGLAGRLEISADEAQDMISR 785 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 Y+ RFPGI YI +T R+ GY ET+FGR+ + I + R ERAAINAPIQG Sbjct: 786 YYERFPGISIYINETIEKARERGYTETLFGRKTWFPRIKASIQHERQGAERAAINAPIQG 845 Query: 895 SAADITRRAMISVHKSLEDHKL-ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 ++ADI +RAM+ + +LE L +MLLQ+HDELVFEVPE ++ AS ++ ME A Sbjct: 846 TSADIIKRAMVRMGPALEAAGLSGVRMLLQVHDELVFEVPEGDVDAASAVVRRVMETAAE 905 Query: 954 PKINLRVPLKVNIKVSNNW 972 P + L VPL V I +W Sbjct: 906 PIVTLSVPLGVEIGTGPSW 924 Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 140/286 (48%), Positives = 195/286 (68%), Gaps = 1/286 (0%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +NHL+LVDGS +I+RA++ P L+ +H G PV A+ G+ MLWKL + K +H AV Sbjct: 3 QNHLYLVDGSGYIFRAYHQLPPLTNRH-GQPVGAVYGYTTMLWKLAEELGKAEGPTHLAV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 I D + TFRN++Y YKANRP PE L+PQ P++R AT+AF +P IE G+EADDIIA+ Sbjct: 62 ILDKGSHTFRNDMYDQYKANRPPAPEDLVPQFPMIRDATRAFSLPCIEEDGYEADDIIAS 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 YT A G+ VTI+S+DKDLMQL+ P +YDT+K E+ ++V+ K+G+ PE++ + Sbjct: 122 YTRAAVAAGWHVTIVSSDKDLMQLIQPGVDMYDTMKNERRGADYVMGKFGVQPEQLGDVL 181 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GDS+DN+PGIPGIG KTAA L+ EYG LE L A +K+ K +EN++ +A+ ARLS Sbjct: 182 ALMGDSVDNVPGIPGIGPKTAAKLITEYGGLEAALDAAPSMKKSKMQENLIAHADMARLS 241 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 R+LV L + + PLE L L+ L +FL+ F L+NR+ Sbjct: 242 RRLVALHDAMDLPEPLEELTLKGIPPEPLQTFLEHHGFKTLLNRLG 287 >gi|329946786|ref|ZP_08294198.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str. F0386] gi|328526597|gb|EGF53610.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str. F0386] Length = 913 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 301/982 (30%), Positives = 491/982 (50%), Gaps = 98/982 (9%) Query: 17 YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75 +RAFYA P+ + G NA+ GF +M LL+N R +H AV FD P TFR E Sbjct: 3 FRAFYALPVDNFTTSTGQSTNAVHGFVSMFLSLLENERP----THVAVAFDLPGGTFRTE 58 Query: 76 IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135 Y +YK R + P+ L Q+ L+ +A G+ A+ G+EADDI+AT A+ EG V Sbjct: 59 EYAEYKGTRDETPQPFLGQVELIEEVLEAMGVKALTAPGYEADDILATLAASAQTEGMEV 118 Query: 136 TIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191 + S D+D Q V+ + VK ++ V ++G+ PE+ L AL G++ D Sbjct: 119 LLCSGDRDSFQTVTERCTVLYPVKGVSTLRRMTPAEVEGRYGVTPERYPHLAALVGETSD 178 Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251 N+PG+PG+G KTAA + Y L+ ++ +A +IK K +++ ++ + +R+L L T Sbjct: 179 NLPGVPGVGPKTAAKWINLYDGLDGVIAHADQIKGKAG-QSLRDHLDDVMRNRRLNHLLT 237 Query: 252 DVPITI-PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTE 310 D+ + + P + L + + L +ALEF L R Sbjct: 238 DLDLGVAPRKDLRVSGADRADLARVFEALEFRTLHQRA---------------------- 275 Query: 311 NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTK 370 ++T F+ S+ + E + LE L+ S + +D Sbjct: 276 ---------------LRTLTFTDTSNHAEPVEGEASGPLGALESLELAS---LGHD---- 313 Query: 371 IVNTKDIQQWVQKLETI--GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428 + + + QW++ + G+ S + D + KP+ + + D V + Sbjct: 314 -LAARGLSQWLETNLSADDGNGSRLLGVDVVGVL--KPVEGDAALVSLSD----GVRAVA 366 Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-E 487 IDL+ +D + L + + K+ + K L G++M G Sbjct: 367 IDLTKILPEDE-----------AALAELLADVERPKLVADAKGSWHALRARGLTMDGVVA 415 Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR----------KSSIPIDKI-SDS 536 D L Y+ + S+D+ ++ Q+WL + + + +S+ +D + SD+ Sbjct: 416 DPSLAGYLCRPEQRSYDVDTLTQRWLGIDLAVVGEGQNQADAGSSQSQSAFDLDALASDA 475 Query: 537 QVQEH--AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 H + + V+L L ++L ++ L ++ L+ P+ ++ ME GI +D + Sbjct: 476 VPAAHLASARRAAVLLPLQVVLDEQMADRDALGLFADLEMPVAATLTVMEDVGIAVDDAV 535 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L E+ + E Y +G + NLSSPKQL +LF +LK P KTKTG + T A Sbjct: 536 LAVRETELDARVTHAAEGAYAAAGRELNLSSPKQLQAVLFDELKMPKTRKTKTG-YTTDA 594 Query: 655 QDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + L + +P ++N+LE R K++ T + L I + R+HT + TGRL Sbjct: 595 EALAGLYAKTSHPFLENLLEHRDAIKLRQTV-EGLRKAI-QSDGRIHTTFQQTIAATGRL 652 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 +S +PNLQNIP + + G +IR+AF + + L++ADYSQIE+RI+AH++ L + F Sbjct: 653 SSTDPNLQNIPARNEEGMRIRQAFTVGEGYECLMTADYSQIEMRIMAHLSGDQALIEAFR 712 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + D+HR VAA + G++++ V+ Q R H K +++ + YG+S F LA QL I +EAAD Sbjct: 713 SGEDLHRYVAALVHGIDVDDVTAQQRSHVKAMSYGLAYGLSTFGLARQLGIGNAEAADLR 772 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF RF +H+Y+E R++GY +T+FGRR + ++ S R + ERAA+NAPI Sbjct: 773 NAYFARFGRVHDYLESVVEQARRDGYTQTMFGRRRYLPDLTSDNRQRREMAERAALNAPI 832 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAADI ++AMI V ++L + L++++LLQIHDEL+ EV E+ ++ M A Sbjct: 833 QGSAADIVKKAMIDVDRALSEQGLSSRVLLQIHDELLVEVASAEVEAVETLLKEQMGGAA 892 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L VPL V + W+E Sbjct: 893 ----ELSVPLDVAVGRGRTWRE 910 >gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65] gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65] Length = 916 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 249/625 (39%), Positives = 371/625 (59%), Gaps = 24/625 (3%) Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 K Q P++ YT + + +Q+W+ KL+ + T ++ ++ + I+++ Sbjct: 307 KQQQLPVDRSLYTNLSTEEALQEWLDKLDKAELYAIDTETTSLKYMEAEIVGISLAVAPN 366 Query: 417 KDDTSFKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKL 474 E +I L+ D G L ++ +L +K E+E K+G N+KYD Sbjct: 367 --------EACYIPLA----HDYAGAPEQLDRDWVLQKMKPLLEDETPKKVGQNLKYDAH 414 Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPI 530 VL Y I + G D ML SYVL+S S H++ +A+ +L + + I + Sbjct: 415 VLKNYDIELNGIAHDTMLESYVLNSTASKHNMDDLAKHYLGHECIDFESIAGKGAKQLTF 474 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQ 589 ++I Q E+A E++++ L+L +L P+L E LL +Y++++ P++ V++ ME G Sbjct: 475 NQIPVEQAGEYAAEDADITLRLHQVLWPQLEADESLLTLYKKVELPLVQVLTNMEYVGAS 534 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ++ D L Q S+EI + L LE +D++GE FNL S KQL I F KL+ P KT GQ Sbjct: 535 VNADKLHQQSSEIEQRLQELERKAHDIAGEVFNLGSTKQLQAIFFEKLELPVIKKTPKGQ 594 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + L +++ D + K ILE R L+K+K+TY D LP IN ++QRVHT Y A T Sbjct: 595 PSTAEEVLVELSH-DYELPKVILEHRGLAKLKNTYTDKLPLMINSKSQRVHTSYHQAVTA 653 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIPI+ + G+KIR+AF +P L++ADYSQIELRI+AH++ L Sbjct: 654 TGRLSSSDPNLQNIPIRNEEGRKIRQAFEAPEGYTLVAADYSQIELRIMAHLSGDKGLLD 713 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F+N DIHR AAEI V+ V + RR AK +NF +IYG+S F LA QL I RSEA Sbjct: 714 AFKNGKDIHRATAAEIMEVDEADVDNEQRRRAKAVNFGLIYGMSAFGLARQLGIGRSEAQ 773 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 +YI +YF R+PG+ +Y+E T+ + GYVET+FGRR++ EINS R ER AIN Sbjct: 774 EYIDKYFDRYPGVKKYMESTRELAAKQGYVETLFGRRLYLPEINSRNGMRRQAAERTAIN 833 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AADI +RAMI +H+ +++ M++Q+HDEL+FEVP+ ++ S I ME Sbjct: 834 APMQGTAADIIKRAMIKMHQWIQESAHDVHMIMQVHDELIFEVPDGQLDAVSAEIKSIME 893 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 A +L VPL V++ +NWQ+ Sbjct: 894 AAA----DLDVPLLVDVGHGDNWQQ 914 Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 164/290 (56%), Gaps = 11/290 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RAF+A P L+ G P A+ G NM+ L +K S V+FD Sbjct: 16 VILVDGSSYLFRAFHALPPLTNSK-GNPTGAVKGVINMIRSL----KKGYPDSKIIVVFD 70 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFRN+IYP+YKA+RP +P+ L Q+ + +A G+P + I EADD+I T + Sbjct: 71 AKGKTFRNDIYPEYKAHRPPMPDDLRVQIQPIHDIIKAMGLPLLVIDNVEADDVIGTLAH 130 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A +G + + DKD+ QLVS L +T+ E++D++ V K+G+PPE +V AL Sbjct: 131 EATDQGIETLVSTGDKDMAQLVSEHVQLINTMNNEQLDVDGVQAKFGVPPEHIVDYLALM 190 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAETA 240 GD +DNIPG+P +G KTA L+ G+LE++ + K + + E+ E A Sbjct: 191 GDKVDNIPGVPKVGEKTAKALIAGLGSLEDVYSRLDDVATLDFRGAKSMKAKLEEHKEQA 250 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 LS++L ++TDV + L + +++ + +L+ + EF I ++T Sbjct: 251 FLSKELATIKTDVELEWGLGDIKIDEPDNKKLLELYQECEFKTWIKELST 300 >gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 922 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 245/625 (39%), Positives = 369/625 (59%), Gaps = 37/625 (5%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y +++ + W+QK+E + T ++D ++ + I+++ E Sbjct: 320 GYETVLDWPAFENWLQKIENAPLTALDTETTSLDPLAARIVGISLAVAPG--------EA 371 Query: 427 IFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 ++ L+ D G E+L+ LK + E+ KIG ++KYD+ VL +GI++ Sbjct: 372 AYLPLA----HDYPGVPAQLPCDEVLARLKSWLESPGHAKIGQHLKYDQHVLANHGIALA 427 Query: 485 GFE-DIMLMSYVLDSGRSS---HDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537 G D +L SYVL+SG+ HD+ +A + L + + + I ++++ Q Sbjct: 428 GVRHDTLLQSYVLESGKDGVRGHDLGQLATRHLGLATIPYEALCGKGANQIGFEQVAIGQ 487 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 E+A E++++ +L +L P+++ + L VY ++ P+ D++ +ME G+ ID +LL Sbjct: 488 AAEYAAEDADLCQRLHAVLYPQIVADAGLARVYAEIEIPVRDILFRMERQGVLIDGELLT 547 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 + S EI K LL LE + +G+ FN++SPKQL +ILF KL P KT +G T + Sbjct: 548 RQSHEIGKRLLDLEARAHAAAGQPFNVNSPKQLAEILFDKLGLPVKKKTPSGTPSTDEEV 607 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 L ++ D P+ K +LE RQL+K+K TY D LP +N T RVHT Y+ A +TGRLAS Sbjct: 608 LSELAL-DYPLPKILLESRQLAKLKGTYTDKLPKMVNAGTGRVHTSYAQAVAVTGRLASS 666 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T G++IR AFI+PP L+SADYSQIELRI+AH+++ L + F D Sbjct: 667 DPNLQNIPVRTAEGRRIRAAFIAPPGSSLVSADYSQIELRIMAHLSEDARLLEAFAQGED 726 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 +HR AAEIFGV V P RR AK INF +IYG+S F LA +L + R A YI+RYF Sbjct: 727 VHRATAAEIFGVRPVDVGPDQRRVAKVINFGLIYGMSAFGLARELDLERGAAQAYIERYF 786 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+PG+ Y+ T+ R GYVET+FGRR+ EI S ++ R ERAAINAP+QGSA Sbjct: 787 ARYPGVARYMATTREAARTQGYVETVFGRRLWLPEIRSSQAGRRQGAERAAINAPMQGSA 846 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AMI+V L+ +L T++L+Q+HDELV EVP++E+ + LP++ Sbjct: 847 ADLIKSAMIAVQGWLDAERLQTRLLMQVHDELVLEVPDDELARV---------RGELPRL 897 Query: 957 -----NLRVPLKVNIKVSNNWQEEN 976 +LRVPL V++ V NW E + Sbjct: 898 MTDFASLRVPLVVDVGVGANWDEAH 922 Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 105/282 (37%), Positives = 156/282 (55%), Gaps = 3/282 (1%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R P A+ G NML +L + + I ++ A IFD Sbjct: 4 LLLVDGSSYLYRAFHAMPDL-RTTKNEPTGALHGVLNMLRRLESDYQAAGI-TYKACIFD 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ YP+YKANRP +P+ ++ Q+ + A A G P + I G EADD+I T Sbjct: 62 AKGKTFRDDWYPEYKANRPPMPDDMVRQIEPLNAAIAALGWPLLSIDGVEADDVIGTLAT 121 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A G V + + DKDL QLV P L +T+ E +D V K+G+PPE++V AL Sbjct: 122 QAAAAGIEVVVSTGDKDLAQLVGPHVTLINTMSNEALDEAGVRAKFGVPPERIVDYLALI 181 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ +G KTA L +YG+L+ ++ A+ +N+ + L+R+L Sbjct: 182 GDAVDNVPGVDKVGPKTAVKWLDQYGSLDGVIAAAA-AIGGVVGQNLRRSLDFLPLARRL 240 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 V +R D+ + + L L + RLI E + V Sbjct: 241 VSVRCDLELPLALRELAPRPADRERLIELFAHYEMRSWLREV 282 >gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264] gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264] gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264] Length = 926 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 245/612 (40%), Positives = 361/612 (58%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y + + W+ K+ +F T ++D ++ + ++ S ++ V Sbjct: 329 YMTVQTWEQFDAWLAKISAAELTAFDTETTSLDPMLAQIVGLSFS-VEPGHAAYVPVAHR 387 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G E Sbjct: 388 GPDMPAQLPRD---------EVLAKLTPWLEDASKKKLGQHLKYDAQVLANYGIALNGIE 438 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R+ HD+ S+A + L +++ I D++ Q E+A Sbjct: 439 HDTLLESYVLESHRT-HDMDSLALRHLGVRTIKYEDVAGKGAQQIGFDEVPLEQASEYAA 497 Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S+EI Sbjct: 498 EDADITLQLHHALYPQIAREPGLSRVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEI 557 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 558 ATRLIELEQQAYGLAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL-A 616 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 617 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQN 676 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+PP K++SADYSQIELRI+AHI++ L + F + DIHR A Sbjct: 677 IPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATA 736 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 737 AEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPGV 796 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 797 ARYMEETRARAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 856 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V LE L +M++Q+HDELV EVPE E++ I+ + + L+VPL Sbjct: 857 SMIAVDDWLERGGLRARMIMQVHDELVLEVPESELS----IVREKLPEMMCGVAKLKVPL 912 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 913 VAEVGAGENWEE 924 Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHSAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V +L Sbjct: 127 RAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] Length = 911 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 234/533 (43%), Positives = 334/533 (62%), Gaps = 10/533 (1%) Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDI 505 +++L+ LK EN LK+G N+KYD +L +GI++RG ED ML SYVLDS + HD+ Sbjct: 382 EQVLAKLKPILENADILKLGQNLKYDSNILCNHGITLRGITEDTMLESYVLDSVGTRHDM 441 Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-I 561 S+A K+L ++I + ++I+ Q +A E+++V L+L +L PKL Sbjct: 442 DSLALKYLGRGTTKFQDIAGKGAKQLTFNQIALEQAAPYAAEDADVTLRLHEVLSPKLKA 501 Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 V +L +Y L+ P++ V+S++E G I + L S E++ L SLE +L+G+ F Sbjct: 502 VPRLHQLYAELEVPLVAVLSRIERNGAYISRQSLADHSHELAGRLESLEARAQELAGQAF 561 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 NL SPKQLG+ILF KL P KT G T + L ++ D P+ ++E+R LSK+K Sbjct: 562 NLGSPKQLGEILFDKLGLPVIKKTPKGAPSTAEEVLLEL-AEDYPLPSVLMEYRSLSKLK 620 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 STY D LP I+ T RVHT Y A T TGRL+S +PNLQNIPI+T+ G++IR+AF++P Sbjct: 621 STYTDRLPEVIDPDTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRTEEGRRIRQAFVAPE 680 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 +++++ADYSQIELRI+AH+++ L + F LD+H AAE+FGV + V+ RR A Sbjct: 681 GRRILAADYSQIELRIMAHLSRDAGLLRAFSEGLDVHSATAAEVFGVELNDVTVDQRRKA 740 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K INF +IYG+S F LA QL I R EA +YI+RYF R+PG+ +Y+ +T+ + GYVET Sbjct: 741 KAINFGLIYGMSAFGLARQLHIGRGEAQEYIERYFSRYPGVADYMARTRAEAHERGYVET 800 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 FGRR+ EIN+ + ER AINAP+QG+AADI ++AMI+V L+D L ++ Sbjct: 801 HFGRRLQLPEINAKNKQRQLAAERTAINAPMQGTAADIIKKAMIAVDAWLQDSSLDALLI 860 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +Q+HDELVFEV E + S+ + M L VPL V V NW E Sbjct: 861 MQVHDELVFEVAETAVAQLSEALPSLMADVA----ALEVPLLVEAGVGANWDE 909 Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 120/404 (29%), Positives = 196/404 (48%), Gaps = 35/404 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + L LVDGSS+++RA++A P L+ GL A+ G M+ KLL + + + V Sbjct: 3 DKRLILVDGSSYLFRAYHALPPLTNSK-GLNTGAVKGVIGMIRKLLADYPDDQVV----V 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFRNEIY +YKANRP +P+ L Q+ + A G+P + + G EADD+I T Sbjct: 58 VFDAKGPTFRNEIYSEYKANRPPMPDELREQIEPIHGIIHAMGLPLLCVPGVEADDVIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A V + + DKD+ QLV+ L +T+ ++ + V++K+G+PPE ++ L Sbjct: 118 LAARAADADRPVLVSTGDKDMAQLVNDHVTLVNTMTNTVLNRDGVVEKFGVPPELIIDLL 177 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI------LINASRIKQKKRRENILEYA 237 AL GD +DNIPG+ G+G KTA LLQ G ++ I + + S K + ++ Sbjct: 178 ALMGDKVDNIPGVAGVGEKTALALLQGIGGVDAIYGALDQVADLSVRGAKTLAAKLEKHR 237 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN----------- 286 + A LS +L + TD + + E L+ + LI + + +EF ++ Sbjct: 238 DEAELSYRLATIETDCDLPLSEEDLVSAAPDRDALIGYYQDMEFKAWLDEQLSDDAPEDH 297 Query: 287 -RVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345 D D +E +V+D + ++ IK F + +T+ +N Q Sbjct: 298 LEADADSDHDGDTLEVIVIDEMSVLDQWF---------DDIKARGFFAFDTETTSLNYMQ 348 Query: 346 TPQKLFLE--RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI 387 F R + P+ +D Y + D +Q + KL+ I Sbjct: 349 ARLVGFSMAIRPGTAAYVPLGHD-YPGAPDQLDFEQVLAKLKPI 391 >gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916] gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916] Length = 1007 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 340/1050 (32%), Positives = 524/1050 (49%), Gaps = 126/1050 (12%) Query: 2 QKENHLFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKES 56 Q + L LVDG S +R+FYA L+ K DG+P + GF L LL N K Sbjct: 5 QDKPLLLLVDGHSLAFRSFYAFSKGGEGGLATK-DGVPTSVTYGF---LKALLDNC-KSL 59 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGF 115 A+ FD TFR++ P+YKA+R PE+ L L + Q +P GF Sbjct: 60 TPQGVAIAFDTAEPTFRHKADPNYKAHRDTAPEVFFQDLNQLQEILRQQLQLPLCMAPGF 119 Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDI 165 EADD++ T A G+ V I+S D+DL QLV + +Y + I+ Sbjct: 120 EADDVLGTLANRAANAGWRVRILSGDRDLFQLVDDSRDIAVMYMGGGPYARSSGPMLINE 179 Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI--LINASR 223 E V+ K G+ P +V L+ALTGDS DNIPG+ G+G KTA LL+E G+L+ + ++ Sbjct: 180 EGVVAKLGVVPTSVVDLKALTGDSSDNIPGVKGVGPKTAINLLKENGDLDAVYRVLAEVE 239 Query: 224 IKQKKRRENILEYA---------ETARLSRKLVMLRTDVPITIPLE-HLILEDCNGPRLI 273 + K ++ A + A LSR+L + D+P+ P E L L +G L Sbjct: 240 AEGPKASRGAIKGALKGKLSNDRDNAYLSRQLAEILVDIPL--PEEPALELGPVDGEGLQ 297 Query: 274 SFLKALEFTKLINRV---ATTYDCD--AAN---IEPVVLDINTTENKGIAIETEIDR--- 322 L+ LE L+ +V T+ AAN +E + T+ + ++ D+ Sbjct: 298 QQLEMLELNSLVRQVPAFVATFSTGGLAANRHLVESAKTSSSKTKASASSSTSDPDQAAA 357 Query: 323 -DTTIKTSQFSSLSDQTSKINSEQTPQKL--FLERLQKLSQ--YPINNDSYTKIVNTKDI 377 D + +SL D ++ + TP +L +ERL P+ D+ T D+ Sbjct: 358 NDPSTSPESSASLPDLQPELIT--TPAQLTGLVERLMACRDPLAPVAVDT-----ETSDL 410 Query: 378 QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQ 437 + +L +G + D P+ +D + + E + +D Sbjct: 411 NPFKAQLVGVGVCWGADLKD----LAYIPVGHMAPAAPDGEDAAGEPEQLALD------- 459 Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVL 496 +L L + + K N KYD+L+L R+G+++ G D +L Y+ Sbjct: 460 ----------AVLQALAPWLASSDHPKALQNAKYDRLILLRHGLTLGGVVMDTLLADYLR 509 Query: 497 DSGRSSHDIASIAQKWLSYT----------RKEILKSRKSSIPIDKISDSQVQEHAIENS 546 D+ + H + +AQ+ T K+ S +++P+D Q + + Sbjct: 510 DAA-AKHGLDLMAQRDYGITPTLFTDLVGKAKDGKASSFAAVPVD-----QAALYCAMDV 563 Query: 547 NVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 ++ +L L LR +L + E+L + E+++ P+ V++ ME TGI+ID L+++SAE+ Sbjct: 564 HLTRRLALDLRQQLTSMGEQLPALLEQVELPLEPVLALMEATGIRIDVPYLQELSAELGA 623 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINC 662 L LE D+ G FNL+SPKQLG++LF L +TKTG W T A LE++ Sbjct: 624 TLERLETEAQDVVGTSFNLASPKQLGELLFDTLGLNRKKSRRTKTG-WSTDATVLEKLE- 681 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 GD+P++ +LE R LSK+KSTY ++LP + T RVHT ++ A T TGRL+S PNLQN Sbjct: 682 GDHPVVPLLLEHRVLSKLKSTYVEALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQN 741 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T+ ++IR+AF+ +L+SADYSQIELRIL H++ L Q + + D+H + A Sbjct: 742 IPVRTEFSRRIRKAFLPQEGWQLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTA 801 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 + ++VS RR KTINF +IYG+ R A + + + A D++ +Y R+P + Sbjct: 802 RLLL--EKDEVSADERRLGKTINFGVIYGMGAQRFARETGVSQVVAKDFLAKYKQRYPKV 859 Query: 843 HEYIEKTKNFVRQNGYVETIFGRR--IHYD-------------EIN---SPKSSIRNINE 884 ++E + GYVETI GRR H+D EI+ + + + Sbjct: 860 FAFLELQERLALSRGYVETILGRRRPFHFDRNGLGRLLGKDPLEIDLDVARRGGMEAQQL 919 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 RAA NAPIQGS+ADI + AM+ + +L+ L ++LLQ+HDELV EV + T Q++ Sbjct: 920 RAAANAPIQGSSADIIKLAMVQLQTALQQQGLPAQLLLQVHDELVLEVEPAALDTVRQLV 979 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 V +ME A + L VPL V NW E Sbjct: 980 VQTMENA----MTLSVPLVVETGSGANWME 1005 >gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43] Length = 926 Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust. Identities = 252/616 (40%), Positives = 367/616 (59%), Gaps = 33/616 (5%) Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425 N +Q W Q L TI +A +F T ++D ++ + + SF VE Sbjct: 328 NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMLAQIVGL-----------SFSVEP 376 Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 ++ L+ H D + E+L+ L + E+ K+G ++KYD VL YGI++ Sbjct: 377 GHAAYVPLA-HRGPDLPAQ-LPRDEVLAKLTPWLEDASRKKLGQHLKYDAQVLANYGIAL 434 Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 G E D +L SYVL+S R+ HD+ S+A + L +++ I D++ + Sbjct: 435 NGIEHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLDKAS 493 Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 E+A E++++ LQL L P++ E L+ VY ++ P+ V+ +ME TG+ ID D L + Sbjct: 494 EYAAEDADITLQLHRALYPQVAREPGLMRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQ 553 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S+EI+ L+ LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+ Sbjct: 554 SSEIATRLVELEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQ 613 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +P Sbjct: 614 KL-AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDP 672 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIP++T G++IR AFI+PP K++SADYSQIELRI+AHI++ L + F + DIH Sbjct: 673 NLQNIPVRTAEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIH 732 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R Sbjct: 733 RATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLR 792 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD Sbjct: 793 YPGVAHYMEETRARAKERGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAAD 852 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 + + +MI+V LE L +M++Q+HDELV EVP+ E++ + + M L Sbjct: 853 LIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPDGELSVVREKLPEMMCGVA----KL 908 Query: 959 RVPLKVNIKVSNNWQE 974 +VPL + V NW+E Sbjct: 909 KVPLVAEVGVGENWEE 924 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 98/245 (40%), Positives = 149/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKAHRPPMPPDLALQIEPIHAAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE++V +L Sbjct: 127 QAEQHGMNVIVSTGDKDLAQLVTDRVTLINTMTNEALDRDGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG+L+ ++ +A IK +N+ + L+R+L Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYGSLDGVVEHAGEIKGVV-GDNLRRALDFLPLARQL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 976 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 328/1025 (32%), Positives = 524/1025 (51%), Gaps = 120/1025 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIAS 59 L LVDG S +R+FYA S+ DG P + GF L +N E + Sbjct: 13 LLLVDGHSLAFRSFYA---FSKGVDGGLTTKEGFPTSVTYGFLKSLLDNCKNINAEGVC- 68 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEAD 118 + FD TFR+E+ P+YKANR P++ + + + ++ +P + GFEAD Sbjct: 69 ---ITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILKESLNLPIFKSPGFEAD 125 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHV 168 D++ T A +G+ V I+S D+DL QLV +Y + ++ V Sbjct: 126 DLLGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNENGV 185 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 +K G+ PE++V L+ALTGDS DNIPGI G+G KTA LL+E L+ I A I QK Sbjct: 186 KEKLGVYPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIY-KALDIIQKD 244 Query: 229 R------------RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276 RE + A LSR L + +VP+ + L N L L Sbjct: 245 EDKKYQGFIKGAVREKLKNDKFNAYLSRDLAKIDVEVPLVLS-NGYELNQINQDALSESL 303 Query: 277 KALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336 + LE + L+ +V N+ +KG + + Q S Sbjct: 304 QKLELSTLLRQVDI---------------FNSAFSKG-------GFNKNNEEKQKKKESK 341 Query: 337 QTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLE-TIGSASFKII 395 ++ IN E+T + + K+ +N N K + Q V++LE T + Sbjct: 342 VSASINLEETEHE-----IPKIKVNIVN--------NFKLLDQLVKRLEITKEIVALDTE 388 Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455 T++++ ++ + I ++ +D +I LS H SQ +++ L+ Sbjct: 389 TNSLNPLDAELVGIGFCLGEEIND------LFYIPLS-HQSQKKEMNQLAIEDVFFNLRS 441 Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514 + E+ K N K+D+ + + +G+++RG D +L Y+L++ + H ++ I+ + Sbjct: 442 WIESPEKEKTLQNCKFDRQIFYNHGLNLRGVTFDTLLADYILNN-QEKHGLSEISFREFG 500 Query: 515 Y---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK--LLHVY 569 + T KE + K +D I+D+ + + + ++ + + + E L ++ Sbjct: 501 FKPPTFKETVGKNKDFSFVD-INDAST--YCGYDVLLTFKIAKIFKERFNNENKDLTKLF 557 Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629 + ++ P+ V+S+ME+ GI+ID L ++S E+ L ++EEN+++++ ++FNLSSPKQL Sbjct: 558 KEIELPLEPVLSEMEMNGIRIDTTYLNELSGELKSTLENIEENVFEIAKQEFNLSSPKQL 617 Query: 630 GDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 G+ILF KL KTKTG W T A LE++ ++ II +++ R LSK+ STY D+ Sbjct: 618 GEILFEKLNLDKKKSRKTKTG-WSTDAVVLERL-VEEHEIIPFLIKHRTLSKLLSTYIDA 675 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747 LPN I+++T RVHT ++ A+T TGRL+S PNLQNIP++T+ ++IR+AF+ KL+S Sbjct: 676 LPNLISEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKGWKLLS 735 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIELRILAH+A L F + DIH + A IF E ++ RR KTINF Sbjct: 736 ADYSQIELRILAHLANEEILINAFHKNDDIHSLTARLIF--EKEDINSDERRVGKTINFG 793 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 +IYG+ + A + +EA +++ +Y R+ I +++E + GYVETIFGR+ Sbjct: 794 VIYGMGIKKFARSTGVSTTEAKEFLIKYKERYAKIFKFLEFQERLALSKGYVETIFGRKR 853 Query: 868 HY------------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 + D + K+ + + RAA NAPIQGS+ADI + AM+ ++K Sbjct: 854 EFKFDKNGLGRLIGKDPYEIDLQTARKAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNK 913 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 L + + KMLLQ+HDEL+FEV + + ++ +ME + L VPL V+I V Sbjct: 914 KLLEMNIPVKMLLQVHDELLFEVQPDFLEITKDLVKETMEDC----VKLNVPLLVDIGVG 969 Query: 970 NNWQE 974 NNW E Sbjct: 970 NNWME 974 >gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 778 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 294/873 (33%), Positives = 467/873 (53%), Gaps = 105/873 (12%) Query: 110 IEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDI 165 ++I GFEADDI+ TY+ IA EG II+ DKD QLV+ +Y T K E+I Sbjct: 1 MDIDGFEADDIVGTYSKIARDEGLETVIITGDKDYFQLVNDDVIVYLTRKGISQMEEITE 60 Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225 E + + +G+ P++++ ++ L GD DNIPG+ GIG KTA +++YG++E++ N I Sbjct: 61 EKIKEDYGLSPKQLIDVKGLMGDKSDNIPGVDGIGEKTALKYIKKYGSMEDLYENLDDIS 120 Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 KK +EN+ R I+FL +K I Sbjct: 121 GKKTKENL----------------------------------ENSRQIAFL-----SKKI 141 Query: 286 NRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQ 345 + T PV +I+ D +K SL ++ SK N + Sbjct: 142 GTIVTN--------APVDYEIS---------------DLRVKDPDMESLKEKFSKYNFNK 178 Query: 346 TPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405 FLE+ + S ++ D + +E FK I + + HSK Sbjct: 179 -----FLEKFEDGSDVQREELDFSYSFTDDDFS-VIDDIEKDKIFYFKTIFENDNYIHSK 232 Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465 IAI + K FI ++ + KK+FE+E+ K+ Sbjct: 233 AFKIAIKSPSSK---------TFI-------------YNPDQKFVDNFKKYFEDENINKV 270 Query: 466 GHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL 521 +IK D ++ ++ GI + ++DIMLM Y++D RSS+D+ + +Q +L Y +++L Sbjct: 271 SFDIKEDIVLFNKLGIEINFPYDDIMLMHYLIDPSRSSYDLKTFSQAFLKYEVLNEEDLL 330 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 ++ +S+ ++ ++ N I +L KL + +Y+ + + V++ Sbjct: 331 GKGRNKKSYKDLSEKELGKYLSSIINAIEDSLDILTDKLKELSMYELYKDCEIKLSKVLA 390 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 MEITG D++ L+++ E+S L LE+ IY+L+G +FN++SPKQL ILF L+ P Sbjct: 391 DMEITGFVCDKNELEKIKDEVSVELEGLEKIIYELAGSEFNINSPKQLSIILFEDLELPI 450 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG + T A+ LE++ +PII I +R++ K+KSTY +SL I+ R+ + Sbjct: 451 IKKTKTG-YSTDAKVLEKLR-DKHPIIGKIERYREMYKLKSTYLESLEECIDG-DGRIRS 507 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 + T TGRL+S EPNLQN+PI+T+ G+KIR+AF + K LI ADYSQIELR+LAH+ Sbjct: 508 TFKQNVTATGRLSSTEPNLQNLPIRTEEGRKIRKAFKADNEKILIDADYSQIELRVLAHL 567 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 A + + F + +DIH A+E+F I++V+ R AK +NF IIYGIS + L+ L Sbjct: 568 ANDKKMQEAFSHDIDIHTKTASEVFNTPIDEVTKLQRSEAKAVNFGIIYGISDYGLSQNL 627 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 IPR A +YI+ Y + +P I +Y++ ++ G+V TIF RR + EINS ++R+ Sbjct: 628 NIPRKRAKEYIENYLNTYPQIKKYMKDIVKKAKEEGFVNTIFNRRRYVPEINSKNFNVRS 687 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER A+N PIQGSAADI + AMI+ +++L+ K+ K++LQIHDE++ E ++++ A Sbjct: 688 FGERVALNTPIQGSAADIIKFAMINSYENLKKAKVDAKIVLQIHDEIIIEASKKDLQKAK 747 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I+ SME+A +NL+VPL V+I ++ E Sbjct: 748 EILKSSMEEA----VNLKVPLLVDIDSGDSMYE 776 >gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39] Length = 959 Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust. Identities = 328/1010 (32%), Positives = 526/1010 (52%), Gaps = 102/1010 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L L+DG S +RA+YA R G+P + GF L +++ + E +A Sbjct: 8 LILIDGHSLAFRAYYAFGKSRNGGLRTSTGIPTSVCFGFIKSLLEVIDTYKPELVA---- 63 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR+E +YKA+R + P + + ++ + F IP + G+EADD++ Sbjct: 64 IAFDRAEPTFRHEADANYKADRAETPADFIEDINNLQELLEGFRIPIFSVAGYEADDVLG 123 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY----DTVKEEKIDIEHVIKKWGIP 175 T G+ V I+S D+DL QL+ T L+ ++ V +K I Sbjct: 124 TLANRGSAAGYQVKILSGDQDLFQLIDEQKQITVLHLSHGKGSSPQEFAAAQVYEKLSIK 183 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PE++V +AL GD D IPG+ GIG KTA LL EYG+L++I + ++IK + + + Sbjct: 184 PEQVVDYKALCGDKSDCIPGVRGIGEKTAVKLLAEYGSLDSIYESVNQIKGAIANK-LKQ 242 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE---FTKLINRVATT- 291 E A S+ + + DVP+ I E L+ + LI LK LE F IN++ + Sbjct: 243 GQELAYHSQTMARIICDVPLDINWEDCQLQGFDSQELIPLLKQLEFHGFINKINQLQSQF 302 Query: 292 ---YDCD-----AANIEPVVLDINTTENKGIAIETEI--DRDTTIKTSQFS-SLSDQTSK 340 +D + +A+ P L+I+ + + DTT++T + S+ Q Sbjct: 303 KGLFDVEINSSISASSPPTELEISENNDNNEDEDVWFFSAEDTTLETKAIAPSIHPQII- 361 Query: 341 INSEQTPQKL--FLERLQKL--SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIIT 396 QTP+ L + RL+ + P+ D+ T + +D L IG ++ Sbjct: 362 ----QTPEALAILVNRLKTHINPEKPVAWDTETTSLEPRD-----ANLVGIGCCWGSELS 412 Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456 D +I L+ HT G+ +++L L+ Sbjct: 413 DLA----------------------------YIPLN-HTQ----GEMLNIEQVLEALRPI 439 Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515 E+E + K N K+D+L+L GI+++G D ML SY+++ SSH++ ++ ++L Sbjct: 440 LESEEYPKTLQNAKFDRLILRSQGITLKGVVFDTMLASYIINP-ESSHNLTDLSLRYLP- 497 Query: 516 TRKEILKSRKSSIPIDK-ISDSQVQEHA-IENSNVILQLWLLLRPKLIVE---KLLHVYE 570 + +S +P K I+D + A +V + + + I++ +L + Sbjct: 498 DLGIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTFQITQKMQDILKDLPRLNDLLR 557 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 ++++P+ +++ ME GI+ID D L Q+S ++ + L +LE+ + +GE FNL SPKQL Sbjct: 558 QVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGETLDNLEKTSHQAAGEVFNLGSPKQLS 617 Query: 631 DILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 ++LF +L+ KTKTG + T A LE++ D+P+I +ILE+R LSK+KSTY D+L Sbjct: 618 ELLFDRLQLDRKKSRKTKTG-YSTDATVLEKLK-HDHPVINSILEYRTLSKLKSTYVDAL 675 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748 P + T R+HT ++ A T TGRL+S PNLQNIPI+T+ ++IR+AFI L+SA Sbjct: 676 PELVRSDTGRIHTDFNQAITSTGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSA 735 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELRILAH+++ L + + + D+H + A +F + + ++P+ RR K INF + Sbjct: 736 DYSQIELRILAHLSQEKVLIEAYNTNQDVHSLTAKLLF--DRDGITPEERRLGKIINFGV 793 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 IYG+ R A ++ + + +I R+ ++PG+ EY+E K GYVETI GRR + Sbjct: 794 IYGMGAQRFAREVGVSATAGKQFIDRFNSQYPGVFEYLESQKLAAINQGYVETILGRRRY 853 Query: 869 YDEINSPKSSIRNINE----RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 ++ + N + RAA NAPIQGS+ADI + AMI + + L++++ ++LLQ+ Sbjct: 854 FEGLKGRDRDRLNYQDEQMLRAAANAPIQGSSADIIKIAMIKLAEILKNYQ--ARLLLQV 911 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDELVFEVP E I +ME CL L VPL V+I NW E Sbjct: 912 HDELVFEVPLSEWEELEYQIKSTMEN-CL---FLSVPLVVDIHAGTNWME 957 >gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei] Length = 615 Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust. Identities = 249/613 (40%), Positives = 366/613 (59%), Gaps = 27/613 (4%) Query: 373 NTKDIQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 N +Q W Q L TI +A +F T ++D ++ + ++ S ++ V Sbjct: 17 NYATVQTWEQFDAWLATISAAELTAFDTETTSLDPMRAQIVGLSFS-VEPGHAAYVPVAH 75 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 D+ +D E+L+ L + E+ K+G ++KYD VL YGI++ G Sbjct: 76 RGPDMPAQLPRD---------EVLAKLTPWLEDAGKKKLGQHLKYDAQVLANYGIALNGI 126 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ +Q E+A Sbjct: 127 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGQGAQQIGFDEVPLAQAFEYA 185 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S E Sbjct: 186 AEDADITLQLHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGE 245 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L++LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 246 IATRLVALEQEAYALAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 304 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 305 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYAQAVAVTGRLASNDPNLQ 364 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AF++PP K++SADYSQIELRI+ HI++ L + F + DIHR Sbjct: 365 NIPVRTAEGRRIREAFVAPPGSKIVSADYSQIELRIMLHISEDESLLRAFAHGEDIHRAT 424 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 425 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 484 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 485 VARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 544 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE L +M++Q+HDELV EVPE+E++ I+ + + L+VP Sbjct: 545 LSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELS----IVREKLPEMMCGVAKLKVP 600 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 601 LVAEVGVGENWEE 613 >gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] Length = 891 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 225/532 (42%), Positives = 341/532 (64%), Gaps = 13/532 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506 E+++ ++ E+ K+G N+KYD LVL R GI++RG D ML SY+L SH + Sbjct: 366 EVVAQVQPLLEDATLAKVGQNLKYDALVLRRAGIALRGVVADTMLQSYLLYPAARSHGLD 425 Query: 507 SIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 ++A L Y + E+ + K I D+++ +A E++++ LQL+ +L Sbjct: 426 ALAADHLGYKMISYSEVAGTGKKQIGFDEVALDVATRYAAEDADITLQLYQRFDAELD-G 484 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 L ++E ++ P++ V+ ME G+++D++ L +SA S ++ LE+ IY+L+GE+FN+ Sbjct: 485 TLRELFETVEMPLLQVLIDMEWWGVRVDRERLDALSAGFSTSIKQLEQQIYELAGEEFNI 544 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKS 682 +SPKQLG ILF KL P G KTKTG W T L+ N D + ++ IL++R L+K+K Sbjct: 545 NSPKQLGVILFEKLDLPHGKKTKTG-WSTAVDVLK--NLADKHDVVALILQYRSLAKLKG 601 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D+LP I+ + R+HT ++ A T TGRL+S +PNLQNIPI+++ G+ IR AF+ Sbjct: 602 TYTDALPLLIHPDSGRIHTSFNQAVTATGRLSSSDPNLQNIPIRSEEGRAIREAFVPDAG 661 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 + L++ADYSQIELR++AH+A L + F DIH+ A+EIF V + V +MRR AK Sbjct: 662 QVLLAADYSQIELRVMAHMADEPILQESFRQGEDIHQRTASEIFSVFPDMVDSEMRRRAK 721 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 TINF ++YG+ F LA L I EA YI YF R+P + E+IE+ K F R++ YVET+ Sbjct: 722 TINFGVLYGMGAFSLAKDLGISNKEAKQYIDHYFERYPAVLEFIEQQKQFGREHLYVETL 781 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 GRR +INS +R+ ER A+N P+QGSAADI + AM+ +H+ L+D +L T+M+L Sbjct: 782 LGRRCAVSDINSKNGQVRSYAERNAVNYPVQGSAADIIKVAMVRIHQRLQDLQLKTRMVL 841 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q+HDELVF+VP++E+ ++V ME+A + LRVPL+V++ NW+E Sbjct: 842 QVHDELVFDVPKDEVDDVVALVVQEMEQA----VELRVPLEVSLGRGANWRE 889 Score = 260 bits (665), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 134/294 (45%), Positives = 192/294 (65%), Gaps = 11/294 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M LFL+DGSS+IYRA+YA LS G+ NA+ GF ML K++++ + +A Sbjct: 1 MSSAPRLFLIDGSSYIYRAYYAIRHLSTSQ-GMACNAVFGFTKMLLKVVRDHNPDQLA-- 57 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 VIFD TFR EIY +YKANR K+PE L+PQ+PL++ AF IPA+E+ GFEADDI Sbjct: 58 --VIFDAKGPTFRKEIYSEYKANRSKMPEDLVPQIPLIKDVVAAFNIPALEMNGFEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IAT G VT+++ DKDLMQ+VS CL DT+K+++ + V +++G P+K++ Sbjct: 116 IATLARQKSAAGMDVTVVTGDKDLMQVVSDKVCLLDTMKDKQSGLAEVAERFGGTPDKVI 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +QAL GDS DN+PG+PGIG KTA L++E+G++EN+L + ++K KKR+EN+ E+A+ A Sbjct: 176 EVQALAGDSSDNVPGVPGIGEKTAKALIEEFGDVENLLAHVDQVKGKKRQENLREFADQA 235 Query: 241 RLSRKLVMLRTDVPIT-IPLEHLILEDCNGPR--LISFLKALEFTKLINRVATT 291 RLSR+LV L D+ ++ +P + C R L K LEF +L + A Sbjct: 236 RLSRQLVTLVDDMDLSGLPAD---FARCEQDREALSELFKTLEFQQLYDEFAVA 286 >gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311] gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311] Length = 994 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 331/1032 (32%), Positives = 514/1032 (49%), Gaps = 113/1032 (10%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L LVDG S +R+FYA L+ K +G+P + GF L + + S+ Sbjct: 10 LLLVDGHSLAFRSFYAFSKGGEGGLATK-EGIPTSVTYGFLKALLDNCKGLKPNSVT--- 65 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120 + FD TFR++ P+YKA+R P L L + T +P GFEADD+ Sbjct: 66 -IAFDTAEPTFRHKADPNYKAHRDVAPAHFFQDLEQLQAILTTQLKLPLCLAPGFEADDV 124 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170 + T A +G++V I+S D+DL QLV + LY + ID V Sbjct: 125 LGTLANRAAADGWSVRILSGDRDLFQLVDDSRNIAVLYMGGGPYAKSSGPTLIDEAGVQA 184 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--K 228 K G+ P K+V L+ALTGDS DNIPG+ G+G KTA LL++ +L+ + + ++++ K Sbjct: 185 KLGVAPTKVVDLKALTGDSSDNIPGVKGVGPKTAISLLKDNDDLDGVYRALAEVEEEGPK 244 Query: 229 RRENILEYA---------ETARLSRKLVMLRTDVPITIPLE-HLILEDCNGPRLISFLKA 278 ++ A + A LSR L + D+P+ P E L L +G L LK Sbjct: 245 ASRGAIKGALKAKLANDKDNAYLSRHLAEILVDIPL--PKEPKLDLGSVDGDGLSQRLKE 302 Query: 279 LEFTKLINRV---ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS 335 LE LI +V T+ +L E + + E TS S Sbjct: 303 LELNSLIRQVPNFVATFSSGGLAANAHLLAKAEEEQRTVKDEA--------ATSAQPSGP 354 Query: 336 DQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKII 395 + S+ +S QT L +Q L Q T+++N +D + + Sbjct: 355 EAISEASSSQTQPVLRPGIVQTLDQL---KALLTQLMNCRD---------PLAPVALDTE 402 Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455 T ++ F ++ + I + DD ++ + V D + +L L Sbjct: 403 TTDLNPFRAQLVGIGMCWGPGSDDLAY--------IPVSHQGDPIPDQLPLETVLQALAP 454 Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK--W 512 + + K N KYD+L+L R+G+ + G D +L Y+ D+ + H + ++AQ+ Sbjct: 455 WLASGEHPKALQNAKYDRLILLRHGLPLAGVVMDTLLADYLRDAA-AKHGLDAMAQRDYG 513 Query: 513 LSYT--------RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IV 562 +S T KE S S +P++ + ++ + ++ +L + L +L + Sbjct: 514 ISPTLFSDLVGKAKEGKASNFSEVPLESAA-----QYCGMDVHLTRKLAIDLNQQLEALG 568 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 +L ++ +++ P+ V++ ME TGI+ID L+ +S EI NL LE + + + FN Sbjct: 569 PQLPNLLSKVELPLEPVLAVMEATGIRIDVPYLEALSCEIGTNLERLEASAKEAAEIDFN 628 Query: 623 LSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 L+SPKQLGD+LF L +TKTG + T A LE++ D+P++ +LE R LSK+ Sbjct: 629 LASPKQLGDLLFNTLGLDRKKSRRTKTG-YSTDATVLEKLEH-DHPVVPLVLEHRVLSKL 686 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 KSTY D+LP + T RVHT ++ A T TGRL+S PNLQNIP++T+ ++IR+AF+ Sbjct: 687 KSTYVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQ 746 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 L+SADYSQIELRIL H++ L Q + + D+H + A + + ++VSP RR Sbjct: 747 DGWTLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLL--DKDEVSPDERRL 804 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 KTINF +IYG+ R A + + +SEA D++ +Y R+P + ++E + GYVE Sbjct: 805 GKTINFGVIYGMGAQRFARETGVSQSEAKDFLSKYKQRYPKVFAFLELQERLALSQGYVE 864 Query: 861 TIFGRR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADITRR 902 TI GRR H+D EIN + + + RAA NAPIQGS+ADI + Sbjct: 865 TILGRRRPFHFDRNGLGRLNGMDPLEINLEVARRGGMEAQQLRAAANAPIQGSSADIIKL 924 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AM+ + LE L ++LLQ+HDELV E E + +++V +M+ A I+L VPL Sbjct: 925 AMVQLQAKLESKNLPARLLLQVHDELVLETEPEALAVVEELVVQTMKNA----IDLSVPL 980 Query: 963 KVNIKVSNNWQE 974 +V NW E Sbjct: 981 EVETGNGANWME 992 >gi|330806700|ref|YP_004351162.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374808|gb|AEA66158.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 922 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 244/620 (39%), Positives = 365/620 (58%), Gaps = 27/620 (4%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I++ W+ KL+ +F T+ DA HS+ + ++ + ++ I Sbjct: 315 YEVILDQAHFDAWLAKLDKAPLFAFVTETNGGDAQHSQLVGLSFAV------APYEAAYI 368 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--------HRY 479 + S + ++T +L LK EN + LK+G + K++ +L Sbjct: 369 PLTHSYMGVPEQLDRDT----VLKALKPLLENPNKLKVGQHAKFETNILANCAIGGDQNN 424 Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISD 535 GI ++G D ML SYVLDS + HD+ S+A K+L ++ ++I + D+IS Sbjct: 425 GILVQGIAFDTMLESYVLDSTATRHDMDSLALKYLGQSKTDFQDIAGKGVKQLTFDQISL 484 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDL 594 +A E+++V +L L+ KL L V ++ P++ V++++E G +D +L Sbjct: 485 ELAGPYAAEDADVTFRLHQALQEKLAATPSLGTVLNDIEMPLMPVLARIERQGALVDANL 544 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L S E+ + L++LE + ++GE+FNL SPKQLG IL+ KL P +KT GQ T Sbjct: 545 LGVQSVELGEKLVALEREAFAIAGEEFNLGSPKQLGVILYEKLGLPVLSKTAKGQASTAE 604 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L ++ D P+ K ++++R LSK+KSTY D LP IN RT RVHT Y A TGRL+ Sbjct: 605 AVLAELAEQDYPLPKVLMQYRSLSKLKSTYTDRLPEQINSRTGRVHTNYQQAVAATGRLS 664 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S++PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+AK L F ++ Sbjct: 665 SIDPNLQNIPIRTSEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLYAFRHN 724 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 LD+HR AAE+FGV +E V+ RR AK INF +IYG+S F LA Q+ + R ++ YI R Sbjct: 725 LDVHRATAAEVFGVELEAVTLDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYIDR 784 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF R+PG+ Y+E+T+ + G+VETIFGRR++ +IN+ ++R ER AINAP+QG Sbjct: 785 YFARYPGVLAYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPALRKGAERTAINAPMQG 844 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AADI ++AM++V + L L K++LQ+HDELV EV E+ + I M A Sbjct: 845 TAADIIKKAMVAVDRWLTTSGLDAKVILQVHDELVLEVREDLVDQVRDEIRQHMSAAA-- 902 Query: 955 KINLRVPLKVNIKVSNNWQE 974 L VPL V + V NNW E Sbjct: 903 --TLDVPLLVEVGVGNNWDE 920 Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 108/282 (38%), Positives = 157/282 (55%), Gaps = 12/282 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ GLP A+ G NML L RK+ S FAV+FD Sbjct: 6 LVLVDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y +YKANRP +P+ + Q+ + + +A G P + + EADD+I T Sbjct: 61 AKGGTFRDALYAEYKANRPSMPDDMRVQIEPLHASVKALGFPLLCVDNVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE+++ AL Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVAPEQIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTA-ALLLQEYGNLENI-----LINASRIKQKKRRENIL-EYAET 239 GDS DNIPG+PGIG KTA LL+ G L + ++ I+ K L E+ E Sbjct: 181 GDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVATLPIRGAKTLAAKLEEHKEM 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 A LS +L ++TDVP+ + L+ L + + +L LEF Sbjct: 241 ALLSYELATIKTDVPLDVGLDDLQMGTPDHEKLAELYTLLEF 282 >gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80] gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80] Length = 525 Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust. Identities = 233/529 (44%), Positives = 340/529 (64%), Gaps = 13/529 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK E+E K+G N+KYD V+ RYG+ +RG D ML SYV +S HD+ S+A + Sbjct: 1 LKPLLEDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALR 60 Query: 512 WLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE--KLL 566 +L ++ +++ K+ + ++I+ + ++A E+++V L+L + P LI + KL Sbjct: 61 FLQHSCISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHP-LIEQDAKLE 119 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 VY ++ P++ V+S++E TG+ ID LL S EI+ L LE+N Y+L+G+ FNLSSP Sbjct: 120 QVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLSSP 179 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQL ILF ++K P KT +G T + L+++ D P+ K ++E+R L+K+KSTY D Sbjct: 180 KQLQTILFEQMKLPVLQKTPSGTPSTNEEVLQELAL-DYPLPKVLIEYRGLAKLKSTYTD 238 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 LP IN T RVHT Y A T TGRL+S +PNLQNIP++ + G++IR+AF++P K++ Sbjct: 239 KLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFVAPHGWKIM 298 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 + DYSQIELRI+AH++ L F + DIH AAEI GV I++VS + RR AK +NF Sbjct: 299 AVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNF 358 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ +Y+E T++ Q GYVETIFGRR Sbjct: 359 GLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRR 418 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATKMLLQIH 925 +H EI S + R ERAAINAP+QG+AADI ++AM+ V + +E + K+L+Q+H Sbjct: 419 LHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVH 478 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DELVFEV E ++ + ME A L VPL +NW++ Sbjct: 479 DELVFEVKESSLSEIESKVQQLMESAA----ELAVPLVAEAGHGDNWEQ 523 >gi|237738344|ref|ZP_04568825.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817] gi|229420224|gb|EEO35271.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817] Length = 905 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 315/986 (31%), Positives = 523/986 (53%), Gaps = 110/986 (11%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+D S+ +YRA++A K + P A+ GF N L +++ + I + F V Sbjct: 8 LLDVSAIMYRAYFANMNFRTKTE--PTGAVYGFVNTLMSIIKEFSPDYIGAAFDV---KR 62 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 A R+EIY +YKA R PE L+ Q+P + + I +I+G+EADD++ T Sbjct: 63 ASLKRSEIYKEYKAQRESAPEDLIAQIPRIEELLDCYNIERFKIEGYEADDVLGTLAKNL 122 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-------EHVIKKWGIPPEKMVC 181 +G V +++ DKDL Q++ + K E D E VI+ G+P +K+ Sbjct: 123 SAQGVEVYVVTGDKDLAQILDENINIALLGKGEGGDKFKIIRTDEDVIEYLGVPSKKIPD 182 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236 L L GDS D IPG+ IG K A +L++Y LE I N ++ + K N++E Sbjct: 183 LFGLIGDSSDGIPGVRKIGPKKAIPMLEKYETLEGIYENIDKLTEIAGIGKSLVNNLVED 242 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E A +SR+L ++ DVP LEF N +YD D Sbjct: 243 KEIAFMSRELAIICQDVP------------------------LEF----NLKNLSYDID- 273 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 NI+ + L K +F +L + N ++ Q++ E+ + Sbjct: 274 -NIKLLEL---------------------FKILEFKALIKKMGLENGDEKTQEI--EKSK 309 Query: 357 KLSQYPINNDSYTKIVNTK-DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 ++S+ + K+V K DI+ V+ L+ + D + ++++ IA S+ D Sbjct: 310 RVSK-----ERTFKVVEGKADIKDMVKSLKKV---------DLVSCYYTE-YGIAFSSFD 354 Query: 416 QKDDTSFKVET-----IFIDLSVHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNI 469 + D F E I ++S+ + KEI ++FF+N + + +N+ Sbjct: 355 K--DYYFPFEKKCESKIGANISLFDPTPVVEDCEINCKEI----QEFFDNYNGEIVTYNL 408 Query: 470 KYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529 K +L+R GIS++ + M+++Y L S ++ ++ + + L+ + + Sbjct: 409 KN---ILNR-GISVKNCKLDMMIAYHLISSQTKENV-ELPIEHLTGIELDNYADKFGKEK 463 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 + IS + ++ + + +L+ + +L+ +L L+ V ++ P+I+++S MEI GI+ Sbjct: 464 PENISAKEYGKYLCQRTMGLLECYDILKEELEDRNLMKVLNEIEMPLIEILSSMEIKGIK 523 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 ID + E+ + L+E IY+ +GE+FN++SPKQL +ILF KL P KTKTG Sbjct: 524 IDPEYFSNYEKELGDLIEKLQEKIYEEAGEEFNINSPKQLAEILFFKLNLPPVKKTKTG- 582 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T + LE++ I K ILE+R+L+K+K+TY D++P + RVHT ++ T Sbjct: 583 LSTDEEVLEKLKVDGAEIAKAILEYRKLAKLKNTYVDAIP-KLRDEKDRVHTTFNQIGTT 641 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIP+KTD G KIR+ F++ L+ DYSQIELR+LA ++ L + Sbjct: 642 TGRLSSSDPNLQNIPVKTDEGIKIRQGFVAEKNSVLMGIDYSQIELRVLAQLSGDENLRE 701 Query: 770 VFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 ++NS+D+H + A +IF + + E+VS + R AKTINFSIIYG + F LA +L I + EA Sbjct: 702 AYQNSMDLHSLTARKIFELSDEEEVSREERIIAKTINFSIIYGKTAFGLAKELGISQKEA 761 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++YI RYF+++P + + ++ F ++GY ET FGRR D INS +I++ ER A+ Sbjct: 762 SEYIDRYFNQYPKVKGFEKEIVEFTEKHGYTETFFGRRRLIDGINSKNKNIKSQAERMAV 821 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 N+ IQG+AA+I ++ MI ++K ++D +LLQ+HDEL+FE+ +E++ + I M Sbjct: 822 NSVIQGTAAEIIKKVMIEIYKYIKDRD-GISLLLQVHDELIFEIEKEKLEMYREDIEKIM 880 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 ++ K + VPL++N + NW E Sbjct: 881 RESV--KFD-SVPLEINTNIGVNWAE 903 >gi|296159650|ref|ZP_06842473.1| DNA polymerase I [Burkholderia sp. Ch1-1] gi|295890094|gb|EFG69889.1| DNA polymerase I [Burkholderia sp. Ch1-1] Length = 913 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/609 (41%), Positives = 371/609 (60%), Gaps = 27/609 (4%) Query: 377 IQQWVQ---KLETIGSA---SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430 +Q W Q LETI +A SF T ++D ++ + +++S + ++ Sbjct: 319 VQTWEQFDAWLETINAAELTSFDTETTSLDPMIAQIVGLSLSVEAGR--------AAYVP 370 Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DI 489 L+ H D+ E+L+ LK + E+ K+G ++KYD+ VL YGI MRG E D Sbjct: 371 LA-HRGPDAP-VQLPRDEVLARLKPWLESVEHKKVGQHLKYDEQVLANYGIEMRGIEHDT 428 Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENS 546 +L SYV++S R+ HD+ S+A + L +E+ I D+++ + E+A E++ Sbjct: 429 LLQSYVVESHRT-HDMDSLALRHLGVKTIKYEEVAGKGAGQIGFDEVALDKAAEYAAEDA 487 Query: 547 NVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 ++ L+L +L P++ EK L +VY ++ P V+ +ME TG+ ID + L+Q S+EI+ Sbjct: 488 DITLRLHQVLYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSEKLRQQSSEIATR 547 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 L+ LE Y L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ D Sbjct: 548 LIQLESEAYVLAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKL-AEDF 606 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQNIP+ Sbjct: 607 PLPKILLEHRGLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQNIPV 666 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 +T G++IR AFI+PP KL+SADYSQIELRI+AHI+ L + F DIHR AAEI Sbjct: 667 RTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRSFSQGEDIHRATAAEI 726 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 F V +VS RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Y Sbjct: 727 FSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARYPGVARY 786 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 +++T+ + GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + +MI Sbjct: 787 MDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMI 846 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 +V K +E+ K+ T+M++Q+HDEL+ EVP+ E++ + + M +L+VPL Sbjct: 847 AVQKWIEESKIGTRMIMQVHDELILEVPDAELSDVRKRLPELMCGVA----DLKVPLVAE 902 Query: 966 IKVSNNWQE 974 + NW+E Sbjct: 903 VGAGLNWEE 911 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 101/250 (40%), Positives = 153/250 (61%), Gaps = 6/250 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R DG P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGMINMLRRM----RKEVTAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ Y DYKANRP +P+ L Q+ + +A +A G P + I+G EADD+I T + Sbjct: 67 AKGKTFRDDWYADYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDVIGTLST 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AEK G V + + DKDL QLVS L +T+ EK+D V+ K+G+PPE+++ +L Sbjct: 127 EAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIIDYLSLV 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L ++ +L+ I+ +A IK +N+ + +++KL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQFDSLDGIVAHADEIKGAV-GDNLRRALDFLPMAKKL 245 Query: 247 VMLRTDVPIT 256 V + + +T Sbjct: 246 VTVERNCDLT 255 >gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489] gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489] Length = 895 Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust. Identities = 312/977 (31%), Positives = 512/977 (52%), Gaps = 96/977 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F++R+++A P L + H+G P + GF ++ +L ++ K+ + FA+ D Sbjct: 4 LTIIDTFGFLFRSYFALPPL-KNHEGFPTGLLTGFAKLIMQLHRDYPKDYLV--FAL--D 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR +I P YKANRP++P+ L QL + + G I I+G+EADD+IA+ Sbjct: 59 SKGENFRKQIDPLYKANRPEMPQDLKLQLEVAIKWVEDMGFKNISIEGYEADDVIASINK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + V IIS DKDL QL+ T L++ K+E+I E I+K+G+ P + V Q++ Sbjct: 119 QANQLKVNVRIISHDKDLYQLIDRDTFLFNPSKKEEIREEECIEKYGVSPSQFVDYQSIV 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DN+PG+ G+G K AA LL Y L+ I N +I QK+ RE +L E A SR+L Sbjct: 179 GDSVDNVPGVKGVGAKGAASLLGAYQTLDGIYENIEKIPQKRIRELLLASKEDAYRSREL 238 Query: 247 VMLRTDVPITIPLEHLIL-EDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 V LR D+ L + +DC ++ LK + ++ ++ ++ + Sbjct: 239 VRLRDDLLEDFDLSKCEMPQDCPLLNILDSLKHYDLNSILKKLHKNPITKKKIVQKQSMQ 298 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINN 365 NT E + I I+ D ++ ++ S TP+ +F Sbjct: 299 ENTQEKQFIYKSHLINTDEKLR------------ELLSTFTPEDIF-------------- 332 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 +T+ V+ + +G F + +D+++ + IA + L ++ S++ Sbjct: 333 -----SFDTETTSLEVRSAKIVG---FSFSVNGVDSYY---VPIAHNYLGVEEQVSYEC- 380 Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMR 484 KE + Y+ F ++ IGHN+KYD +L + ++ Sbjct: 381 --------------------AKEFIEYI---FGCKYV--IGHNLKYDLEILKTNFDFVLQ 415 Query: 485 GF---EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538 F D ML++++L S + ++ + +K+ ++ K+I+ +++ +I Sbjct: 416 DFSKIRDSMLLAWLLQSD-ALCNLDFLMKKYFNHEMIHYKDIVHKKEN---FSQILIQYA 471 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 E+A E++ QL+ L+ L+ E+L+ + + ++ P I + ME+ GI+ID + +++ Sbjct: 472 CEYASEDAAACYQLYFKLKG-LVDERLMEIAKSVEFPFIQSLMNMELIGIKIDLEFFQEL 530 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 E + L + E I+ L+ ++FNL+SP+QL ILF +L +G KTK+G + T+ L Sbjct: 531 ILESRERLHQISEEIFALANKRFNLNSPQQLATILFEELNLQAGKKTKSG-FSTSESVLN 589 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLE 717 + +PII ILE+R+ K+ STY + L H Q R++T + T TGRL+S Sbjct: 590 SL-YDTHPIIPKILEYREFFKLYSTYIEPLSEHAKADLQHRIYTSFMQTGTSTGRLSSKN 648 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIP+KT G++IRR FI+ L+S DYSQIELR+LAH ++ + + F DI Sbjct: 649 PNLQNIPVKTAQGRRIRRGFIAKENHLLVSLDYSQIELRLLAHFSEDEAMIEAFLKDADI 708 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H A +IFG E ++ + R AK+INF +IYG+ P +L+ L+I EA YI+ YF Sbjct: 709 HLETAKKIFG---EDMAQEKRAIAKSINFGLIYGMGPKKLSETLKITFQEAKTYIQNYFT 765 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 FP + E+++ + F+ +NGY +T+ GR +D + + R INA QGSAA Sbjct: 766 SFPTVKEFLKNQEEFILENGYSKTLLGRMRKFD-FEGVQEYQKAAFLREGINAIFQGSAA 824 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AM ++ K+ L +K+LLQ+HDEL+FE P+E S+ I ME Sbjct: 825 DIIKMAMNAITKA----NLESKLLLQVHDELIFEAPKEIAKKESEEIAKIMENIT----T 876 Query: 958 LRVPLKVNIKVSNNWQE 974 L+VPLK I + NW E Sbjct: 877 LKVPLKCTISIGENWGE 893 >gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147] Length = 923 Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust. Identities = 245/613 (39%), Positives = 361/613 (58%), Gaps = 21/613 (3%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + W+ K+ +F T ++D ++ + ++ S ++ V Sbjct: 325 NYDTVQTWAQFDAWLAKISAAELTAFDTETTSLDPMLAQIVGLSFS-VEPGHAAYVPVAH 383 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 DL +D E+L+ LK + E+ K+G ++KYD VL +GI++ G Sbjct: 384 RGPDLPAQLPRD---------EVLAKLKPWLEDASRKKLGQHLKYDAQVLVNHGIALNGI 434 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ + E+A Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLDKASEYA 493 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S+E Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSE 553 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L+ LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 554 IATRLVELEQEAYVLAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQ 672 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AFI+ P K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 673 NIPVRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 793 VARYMEETRTRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE A +M++Q+HDELV EVPE E++ + + M L+VP Sbjct: 853 LSMIAVDDWLERGGFAARMIMQVHDELVLEVPENELSVVREKLPEMMCGVA----KLKVP 908 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 909 LVAEVGVGENWEE 921 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/245 (40%), Positives = 147/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y +YKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYAEYKAHRPPMPPDLALQIEPIHAAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE +V +L Sbjct: 127 EAERRGMKVIVSTGDKDLAQLVTGHVTLINTMTNEALDRDGVLAKFGVPPELIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYGTLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786] Length = 923 Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust. Identities = 245/613 (39%), Positives = 361/613 (58%), Gaps = 21/613 (3%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + W+ K+ +F T ++D ++ + ++ S ++ V Sbjct: 325 NYDTVQTWAQFDAWLAKISAAELTAFDTETTSLDPMLAQIVGLSFS-VEPGHAAYVPVAH 383 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 DL +D E+L+ LK + E+ K+G ++KYD VL +GI++ G Sbjct: 384 RGPDLPAQLPRD---------EVLAKLKPWLEDASRKKLGQHLKYDAQVLVNHGIALNGI 434 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +++ I D++ + E+A Sbjct: 435 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAQQIGFDEVPLDKASEYA 493 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID D L + S+E Sbjct: 494 AEDADITLQLHHALYPQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSE 553 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L+ LE+ Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 554 IATRLVELEQEAYVLAGGEFNLGSPKQIGQIFFERLQLPVVKKTPSGAPSTDEEVLQKL- 612 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQ Sbjct: 613 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPNTGRVHTNYAQAVAVTGRLASNDPNLQ 672 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AFI+ P K++SADYSQIELRI+AHI++ L + F + DIHR Sbjct: 673 NIPVRTAEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRAT 732 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 733 AAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFLRYPG 792 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E+T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 793 VARYMEETRTRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 852 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE A +M++Q+HDELV EVPE E++ + + M L+VP Sbjct: 853 LSMIAVDDWLERGGFAARMIMQVHDELVLEVPENELSVVREKLPEMMCGVA----KLKVP 908 Query: 962 LKVNIKVSNNWQE 974 L + V NW+E Sbjct: 909 LVAEVGVGENWEE 921 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/245 (40%), Positives = 147/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RK+ A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKDVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y +YKA+RP +P L Q+ + A +A G P + I+G EADD+I T Sbjct: 67 AKGKTFRDDLYAEYKAHRPPMPPDLALQIEPIHAAVRALGWPLLMIEGVEADDVIGTLAK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + V+ K+G+PPE +V +L Sbjct: 127 EAERRGMKVIVSTGDKDLAQLVTGHVTLINTMTNEALDRDGVLAKFGVPPELIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG L+ ++ +A IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYGTLDGVVEHAGEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 985 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 327/1029 (31%), Positives = 525/1029 (51%), Gaps = 116/1029 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L LVDG S +R+FYA + +G P + GF L LL N + S Sbjct: 10 LLLVDGHSLAFRSFYAFSKGGEGGLQTKEGTPTSVTYGF---LKSLLDNCKLLS-PEGVT 65 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDII 121 + FD TFR++ P+YKANR P++ L L ++ ++ +P G+EADD++ Sbjct: 66 IAFDTAEPTFRHKADPNYKANRDVAPDIFFQDLAQLQKILEESLNLPIFTAPGYEADDVL 125 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIKK 171 T A G+ V I++ D+DL QLV LY + I+ V K Sbjct: 126 GTLANKASDNGWQVRILTGDRDLFQLVDDDRNIAVLYMGGGPYAKSGSPAFINEAGVKTK 185 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI--LINASRIKQKKR 229 G+ P K++ L+ALTGDS DNIPGI G+G KTA LL+E G+L+ I +++ K +K Sbjct: 186 LGVIPTKVIDLKALTGDSSDNIPGIRGVGPKTAINLLKENGDLDGIFKILDYLETKGEKA 245 Query: 230 RENILEYA---------ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280 + +++ A E A LSR+L + +VPI L +L L N L + L+ LE Sbjct: 246 TQGVIKGALKEKLKTGKENAYLSRQLAEIMINVPIK-ELSNLELTKINQESLKNSLEGLE 304 Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340 LIN++ + + +KG T+Q S S Sbjct: 305 LFSLINQLP---------------NFTASFSKG-----------GFNTNQRSISSTDKKS 338 Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKL----ETIGSASFKII 395 N + TP E+++ P +I+ T+ ++ V KL E + + Sbjct: 339 NNKKNTPD----EKIEDSGTQP--PAIKPQIIETESQLKSLVNKLSRCNEPLQPVAIDTE 392 Query: 396 TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-----IL 450 T +++ F ++ + + + DD ++ I L H SQ ++ ++ ++ Sbjct: 393 TTSLNPFKAELVGLGFCWGENLDDIAY------IPLG-HNSQGELKDQSIRQQLPIQNVI 445 Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510 L + + + K+ N KYD+L+ GI + G L++ L + + H + IA+ Sbjct: 446 QSLTPWLSSSYHPKVLQNAKYDRLIFLHNGIPLEGVVMDTLLADYLSNSTNKHSLDEIAK 505 Query: 511 KWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE--KL 565 + +T KE++ ++ +D I + + + + + +L +R +L + +L Sbjct: 506 REYGFTPINFKELVGKGETFKDVD-IDTASI--YCGMDVYLTRKLSFRIRSQLQTKGSEL 562 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 + + E++++P+ ++++ME GI ID LK++S E+++ L LEE Y +G +FNL+S Sbjct: 563 IQLLEKVEQPLEPILAEMEARGICIDIPYLKELSKELNQTLKGLEEQAYKSAGFEFNLNS 622 Query: 626 PKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 PKQLG+ILF KL KTKTG W T A LE++ D+P++ ++E R LSK+ ST Sbjct: 623 PKQLGEILFDKLALDKKKSRKTKTG-WSTDANVLERLEA-DHPLVPLLVEHRTLSKLVST 680 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y D+LP + T RVHT ++ A T TGRL+S PNLQNIPI+T+ ++IR+AF+ Sbjct: 681 YVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENW 740 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 KLISADYSQIELRILAH++ L + ++N D+H + A + + E ++ RR KT Sbjct: 741 KLISADYSQIELRILAHLSGEEILQEAYKNGDDVHTLTAKIL--LEKESINSNERRLGKT 798 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 INF +IYG+ R A + +SEA D++ R+ R+P + ++E + GYV+T+ Sbjct: 799 INFGVIYGMGAQRFARSTGLNQSEAKDFLNRFKERYPKVFSFLELQERLALSKGYVQTLL 858 Query: 864 GRRIHY-------------DEIN-----SPKSSIRNINERAAINAPIQGSAADITRRAMI 905 GRR ++ D +N + ++ + RAA NAPIQGS+ADI + AM+ Sbjct: 859 GRRRYFNFDKNGLGRLLGSDPMNIDLKRARRAGMEAQQLRAAANAPIQGSSADIIKIAMV 918 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 + L+ +A +LLQ+HDELV EV I I+V +ME A ++L VPL V+ Sbjct: 919 QLATKLKVSGVAANLLLQVHDELVLEVEPSVIEEVKNIVVSTMENA----VHLAVPLVVH 974 Query: 966 IKVSNNWQE 974 + +NW + Sbjct: 975 ASIGDNWMD 983 >gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] Length = 976 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 318/1033 (30%), Positives = 521/1033 (50%), Gaps = 136/1033 (13%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L LVDG S +R+FYA L+ K DG P + GF L +N E + Sbjct: 13 LLLVDGHSLAFRSFYAFSKGIDGGLTTK-DGFPTSVTYGFLKSLLDNCKNICPEGVC--- 68 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRL-ATQAFGIPAIEIQGFEADDI 120 + FD TFR+E+ P+YKANR P++ + + + ++ +P + G+EADD+ Sbjct: 69 -ITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILEESLNLPIFKSPGYEADDL 127 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----------DTVKEEKIDIEHVIK 170 + T A +G+ V I+S D+DL QLV +Y + ++ V + Sbjct: 128 LGTIANDASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNENGVKE 187 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K G+ PE++V L+ALTGDS DNIPGI G+G KTA LL+E L+ I +I+Q + Sbjct: 188 KLGVAPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYQALEKIQQNNDK 247 Query: 231 -----------ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279 E + A LSR L + T+VP+ + + L++ N L L+ L Sbjct: 248 KYKGFIKGSVIEKLRNDKHNAFLSRDLAKINTEVPLILS-DGYELKNINQELLSESLQKL 306 Query: 280 EFTKLINRV---ATTYDCDAANIE---------PVVLDINTTENKGIAIETEIDRDTTIK 327 E + L+ ++ +T+ P +L N EN E +I + I Sbjct: 307 ELSTLLRQIDIFNSTFSKGGFGKNNLVSKEEKVPKILSNNELENS----ENKIPKIKVII 362 Query: 328 TSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETI 387 + F L ++RL K +Q Sbjct: 363 VNDFELLDK--------------LIKRLNKTNQI-------------------------- 382 Query: 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK 447 S T++++ ++ + I + ++ DD +I L H + T + Sbjct: 383 --VSLDTETNSLNPIDAELVGIGLCLGEENDDL------FYIPLG-HQIKKETPNQLSIE 433 Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 ++ S L+ + E+ K N K+D+ + +G+ ++G D +L Y+L++ + H ++ Sbjct: 434 DVFSKLRTWIEDPKKEKALQNSKFDRQIFFNHGLDLKGVTFDTLLADYLLNN-QEKHGLS 492 Query: 507 SIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 I+ + + + KE + K +D I+++ + + + + ++ + + + E Sbjct: 493 EISFRLFGFKPPSFKETVGKNKDFSFVD-INEASI--YCGYDVFLTFKIVKIFKERFSKE 549 Query: 564 K--LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 K L+ +++ ++ P+ V+SQME+ GI ID L ++S E+ L +E +++L+ E F Sbjct: 550 KDELIKLFKEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIENKVFELADENF 609 Query: 622 NLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 NLSSPKQLG+ILF KL KTKTG W T A LE++ ++ II+++++ R +SK Sbjct: 610 NLSSPKQLGEILFEKLNLDKKKSRKTKTG-WSTDALVLERL-VDEHEIIQHLIKHRTISK 667 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 + STY D+LPN IN++T RVHT ++ A+T TGRL+S PNLQNIP++T+ ++IR+AF+ Sbjct: 668 LLSTYIDALPNLINEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLP 727 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 KL+SADYSQIELRILAH+A L F + DIH + A IF E++S RR Sbjct: 728 EKNWKLLSADYSQIELRILAHLADEEILINAFHKNDDIHSLTARLIF--EKEEISSDERR 785 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 KTINF +IYG+ + A + EA +++ +Y R+ I +++E + GYV Sbjct: 786 VGKTINFGVIYGMGIKKFARSTGVSTPEAKEFLIKYKERYSKIFKFLELQERLALSKGYV 845 Query: 860 ETIFGRRIHY------------------DEINSPKSSIRNINERAAINAPIQGSAADITR 901 +TIFGR+ + D ++ ++ + + RAA NAPIQGS+ADI + Sbjct: 846 KTIFGRKREFKFDKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIK 905 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AM+ ++K + KMLLQ+HDEL+FEV + + ++++ +ME + L VP Sbjct: 906 IAMVQLNKKFIEMNFPAKMLLQVHDELLFEVEPDSLEITTKLVKKTMENC----VKLNVP 961 Query: 962 LKVNIKVSNNWQE 974 L V+I + +NW E Sbjct: 962 LLVDIGIGDNWME 974 >gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301] gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301] Length = 892 Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust. Identities = 246/611 (40%), Positives = 352/611 (57%), Gaps = 21/611 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I + ++ +W+ ++ G + T ++ H+K + I+++T + Sbjct: 297 YVTIDSEAELDRWIAEIRHAGRFAIDTETTGLNPRHAKLVGISVATAPGR--------AA 348 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRGF 486 +I L G L L + LKI HN K+D VL R G++ Sbjct: 349 YIPLG-----HEDGPQLPRPLALERLAPVLADPSILKIFHNAKFDLHVLERAGLADATPV 403 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543 +D MLMSY L +GR H + ++ L + + E+ + +S + + + +A Sbjct: 404 DDTMLMSYTLGAGRHGHGMDELSALHLDHRPISYDEVTGTGRSRVSFAAVPIDRATAYAA 463 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 E+++V L+LWLLLRP+L E L +YE +++ ++ V+ ME GI +D+ L+ +SAE + Sbjct: 464 EDADVTLRLWLLLRPRLRTEAALALYETMERRLLSVLLGMERAGIMVDRADLESMSAEFA 523 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + + ++ I L+G FN SPKQLG+ILF ++ P G +TKTG W T A LE++ Sbjct: 524 RRMDDIQREIEKLAGRAFNPGSPKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAAS 583 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 + + +LEWRQL K+KSTYAD+L I+ QRVHT +S A T TGRL+S EPNLQNI Sbjct: 584 GHDLPVRVLEWRQLQKLKSTYADALVGEIDIADQRVHTSFSQAITTTGRLSSNEPNLQNI 643 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 PI+T G +IRRAFI+ P K LISADYSQIELR+LAH+A I L + F DIH AA Sbjct: 644 PIRTSEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHARTAA 703 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 E+FG+ +E + P +RR AK INF IIYGIS F LA QL I SEA +I YF R+P I Sbjct: 704 EVFGLPMEGMDPMVRRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARYPEIR 763 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 Y+ +T F R +GYV T FGRR + I + R ER AINAP+QG AADI +RA Sbjct: 764 RYMNETAEFARTHGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADIIKRA 823 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + ++ D L MLLQ+HDELVFE P+++ +++ M+ A +L VPL Sbjct: 824 MVRLPAAIRDAGLDAVMLLQVHDELVFEAPKDQAEATAKLACAVMQGAA----SLSVPLL 879 Query: 964 VNIKVSNNWQE 974 V + NW + Sbjct: 880 VETGIGANWSD 890 Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 132/263 (50%), Positives = 176/263 (66%), Gaps = 6/263 (2%) Query: 29 KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88 + DG PVNA+ GFCNML +LL KE +H AVIFD TFRNEI P YKA+RP+ P Sbjct: 3 RDDGTPVNAVFGFCNMLARLL----KEHTGTHLAVIFDAGRTTFRNEIDPRYKAHRPEPP 58 Query: 89 EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV 148 E L+PQ LVR AT+AF +PAIE+ G EADD+IA+Y +K G IIS+DKDLMQL+ Sbjct: 59 EELVPQFALVREATRAFAVPAIELDGVEADDLIASYAEEMKKAGGEAVIISSDKDLMQLL 118 Query: 149 SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLL 208 + D +K I + V+ K+G+ PE+MV QAL GDS+DN+PG+PGIG K AA L+ Sbjct: 119 DAHVSMLDPIKSTPIGPDEVVAKYGVTPEQMVDAQALMGDSVDNVPGVPGIGPKGAAQLI 178 Query: 209 QEYGNLENILINASR--IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266 E+G+LE+IL A+ +K KRRE+++ YAE AR+SR+LV LR DVP+ +P++ L + Sbjct: 179 AEFGDLESILAAAASGTMKPSKRRESLVAYAEEARISRRLVELRRDVPLPVPIDELAIAP 238 Query: 267 CNGPRLISFLKALEFTKLINRVA 289 + L FL A F + R+ Sbjct: 239 LHDGMLNDFLDAQGFKSIKARLG 261 >gi|315122836|ref|YP_004063325.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496238|gb|ADR52837.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 233 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 203/228 (89%), Positives = 217/228 (95%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 MQKE HLFLVDGSSFIYRAFYATP LSRK DGLPVNAIAGFCNMLWKLLQNSR E+IASH Sbjct: 1 MQKEKHLFLVDGSSFIYRAFYATPALSRKRDGLPVNAIAGFCNMLWKLLQNSRSENIASH 60 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 F+VIFDYP TFRNEIYPDYKANRP+IPEMLLPQLPLVRLATQAFGIP+IEIQGFEADDI Sbjct: 61 FSVIFDYPDKTFRNEIYPDYKANRPQIPEMLLPQLPLVRLATQAFGIPSIEIQGFEADDI 120 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IATY IAEK GF+VTI+STDKDLMQLVSPTTCLYD++KEEKIDIE+VIKKWG+PPEKMV Sbjct: 121 IATYASIAEKRGFSVTIVSTDKDLMQLVSPTTCLYDSIKEEKIDIENVIKKWGVPPEKMV 180 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 CLQAL+GDSIDNIPGIPGIGYKTAA LLQEYGNL+NIL NA++IKQKK Sbjct: 181 CLQALSGDSIDNIPGIPGIGYKTAASLLQEYGNLDNILNNANQIKQKK 228 >gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH] gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH] Length = 905 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 328/984 (33%), Positives = 521/984 (52%), Gaps = 101/984 (10%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 ++L+D + I+R ++A PL + K G VNA GF L+ ++ KE + V Sbjct: 4 IYLIDALNIIFRNYHAMKNNPLTNSK--GENVNAFIGFFKTLFFII----KEKNPENLIV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR + YP YKA R P+ L+PQ+ ++ IP E QG+EADD+IA+ Sbjct: 58 AFDSETQTFRQQKYPSYKATRDAPPDNLIPQIHWIKEGLLKANIPFFERQGYEADDLIAS 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE--KIDIEHVIKKWGIPPEKMVC 181 + AE+ + IIS DKDL+QL+S T + K+D ++V++K+G+ ++ Sbjct: 118 FAKKAERNNYLTYIISPDKDLLQLMSDQTKILKIENSSFVKMDNDYVMQKFGVNTSQIKD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ GD DNIPGI GIG K A LL E+ L+ I N I + +E +L + A Sbjct: 178 YLSIVGDRSDNIPGIKGIGGKGAVKLLNEFQTLKGIYENIDSINNR-YKEILLREIKNAF 236 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LS +L+ L D+ + LE LE+ ++S + T LI Sbjct: 237 LSYELISLVEDLELP-ALEEFKLENLK-EDVLSLFEEYSATTLIKSY------------- 281 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 K I + + T+Q TS +N+ +T Q+ Sbjct: 282 ----------KAILKKRHV-------TNQTQGTLQTTSYLNTLKTIQE------------ 312 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 N Y I+ + + ++KL+ S T + + + ++ + I++S Sbjct: 313 --ENIKYETILTKEQLDLLIEKLKKTSYVSIDTETTSTNVYEAQILGISVS--------- 361 Query: 422 FK-VETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 FK E+ +I + ++ K ++ +E I +FF+ + L IG N K+D + R+ Sbjct: 362 FKEFESYYIPI------ETKEKKSIEREYITQKFNEFFKTKPKL-IGQNYKFDYKIFTRH 414 Query: 480 GI-SMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR---KEILKSRKS--SIPIDK 532 G ++ + D M+ +YV+D + + S D +++K+L + +EI+ + IP++ Sbjct: 415 GFNAIPPYFDTMIAAYVIDPNTKVSLDF--LSEKYLMHKNIKYQEIVSQNGTLKDIPLET 472 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 +S+ +A E++++ +L+ + KL + L + ++ P +V+++ME GI +D+ Sbjct: 473 VSN-----YAAEDADITFRLFKIFAKKLKEDNLESLMIDVEMPFSNVITEMEENGIYLDK 527 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQW 650 D L+Q S E++K L +E I G KFNL+S KQL +LF +LK P K + Sbjct: 528 DYLRQYSQELTKELKLIENEIIQSIGIKFNLNSSKQLYRVLFDELKLVLPPNVKKHS--- 584 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T+ + LE I I K I+++R++SK+K+TY D+L IN +T ++HT + A T Sbjct: 585 -TSIKVLEAIKDQHESIPK-IIQYRKISKLKNTYTDNLIKFINAKTNKIHTNFIQAKAAT 642 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GR+ S PNLQNIPIK + G+KIR AF ISADYSQIEL ILAH ++ L + Sbjct: 643 GRILSTAPNLQNIPIKDEKGRKIREAFKPKEGNLFISADYSQIELVILAHFSEDGALIEA 702 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+N DIH A+++F V+ +KV+P MRR AK+INF IIY +S L+ +L I R EA Sbjct: 703 FKNKEDIHIKTASQLFKVDTDKVTPSMRRVAKSINFGIIYNMSAHGLSQELSIKREEAQK 762 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I YF+ + I +I+ +F R+NGY ET+ RR + EINS S R+ ER AIN+ Sbjct: 763 FIDSYFNLYSKIKIFIQNRIDFARKNGYSETLLKRRRYIKEINSQNHSERSGAERIAINS 822 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 IQGSA+DI + AM+ V+ + L +K+LLQ+HDE++ E P++E A II ME Sbjct: 823 TIQGSASDIMKIAMVRVYNEFKSKNLKSKILLQVHDEILIESPKQECEEAKTIIKEMMEN 882 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A P L++PL++NI+ +W E Sbjct: 883 AY-P---LKLPLRINIETGKSWGE 902 >gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708] gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708] Length = 982 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 318/1021 (31%), Positives = 514/1021 (50%), Gaps = 114/1021 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 LVDG S +R+++A R G+P + GF L +++ + ++IA Sbjct: 21 FILVDGHSLAFRSYFAFAKGKNGGLRTKAGIPTSVCFGFIKCLLEVITTQKPQAIA---- 76 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR+E YKA+R + PE +P L + + +P G+EADD++ Sbjct: 77 VAFDLGLPTFRHEADDTYKADRLETPEDFIPDLENLNELLRGLNLPIFTAPGYEADDVLG 136 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLV-----------SPTTCLYDTVKEEKIDIEHVIKK 171 T + A G+ V I+S D+DL QL+ SP + E V +K Sbjct: 137 TLSQKASAAGYRVKILSGDRDLFQLIDGDKGITVLNFSPEALKRYANSITEFQAEQVKEK 196 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 G+ P ++V +AL GD DNIPG+ GIG KTA LL Y +L+ I I +E Sbjct: 197 LGVLPTQIVDFKALCGDKSDNIPGVRGIGEKTAVKLLNTYNSLDGIYAKLDEIT-GSTQE 255 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 ++ E A SR L + DVP+ + LE L + +LI L+ LEF K +++ Sbjct: 256 KLIAGKEDASHSRYLAQIVVDVPLEVNLEDCQLTGFDTNQLIPILEKLEFNKFLDQ---- 311 Query: 292 YDCDAANIEPVVLDINTTENK--GIAIETEIDR-DTTIKTSQFSSLSDQTSKINSEQTPQ 348 IN + K G +ET+ + +TT + S + + N+E+ P Sbjct: 312 --------------INELQQKLGGQVLETKAEEINTTQEDDDLWFFSGEDTA-NTEKRP- 355 Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDT----MDAFH 403 ++ +I+NT+D +Q+ V L+ + + DT ++ Sbjct: 356 ---------------DSSIQIRIINTEDKLQELVAILQKCTNLEKPVAWDTETTALEPRD 400 Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463 + + I D E +I + G N ++S L+ EN ++ Sbjct: 401 AALVGIGCCWGTGSD------EAAYIPVG-----HKIGHNLQLDLVVSALRPILENANYP 449 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE--- 519 K N K+D+L+ GI++ G D ML SY+++ ++H+++ ++ + L E Sbjct: 450 KTFQNAKFDRLIFKCQGINLVGVVFDTMLASYLINPD-TTHNLSDLSLRNLGLQLTEYND 508 Query: 520 -ILKSRKSSIP--IDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKP 575 + K+ K + I I V + QL LR +L L + +++P Sbjct: 509 IVTKTGKKELQKNIADIGIDIVAYYCGTQVYATFQLVDKLRCELNKTPDLAKLLVEVEQP 568 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + V+++ME TG++I+ L+++S ++ L LE +++ EKFNL SPKQL ILF Sbjct: 569 LEAVLAEMEYTGVRINSSYLQELSQQLESELAKLEIQATEIASEKFNLDSPKQLSYILFD 628 Query: 636 KLKFPS--GAKTKTGQWKTTAQDLEQINCGDNP-IIKNILEWRQLSKIKSTYADSLPNHI 692 KL + K +TG + T A LE++ DN + I+E+R SK+KSTY D+LP + Sbjct: 629 KLGLSTKYSRKIQTG-YSTDAATLEKLQEVDNTGFVDAIIEYRTSSKLKSTYVDALPALV 687 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752 + ++QR+HT ++ +T TGRL+S PNLQNIPI+T ++IR+AF+ +++ADYSQ Sbjct: 688 HPQSQRLHTDFNQTATSTGRLSSSNPNLQNIPIRTAFSRQIRKAFLPESGWLMVAADYSQ 747 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELRILAH+++ L Q ++ + DIH + A +F ++V+ + RR AKTINF +IYG+ Sbjct: 748 IELRILAHLSQEPVLVQAYKQNEDIHTVTAKLVF--EKDEVTSEERRFAKTINFGVIYGM 805 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 + A + ++ A ++I+R+ R+P + Y+EK K GYVETI GRR ++D Sbjct: 806 GSLKFARSTGVDKANANEFIRRFNERYPQVFAYLEKVKKEAISQGYVETILGRRRYFDFT 865 Query: 873 NSPKSSIRNIN-------------------ERAAINAPIQGSAADITRRAMISVHKSLED 913 + ++ I+ R+A NAPIQGS+ADI + AM+ +H+ L + Sbjct: 866 SKSLKELKGISLEDIDLSRLKNLGAYNAGLLRSAANAPIQGSSADIIKIAMVQLHEVLRN 925 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 ++ ++LLQ+HDELVFEVP +E I ME A ++L VPL V+++ +NW Sbjct: 926 YQ--ARLLLQVHDELVFEVPPQEWGELQLQIKSVMENA----MSLSVPLVVDVRAGDNWM 979 Query: 974 E 974 E Sbjct: 980 E 980 >gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5] gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5] Length = 915 Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust. Identities = 245/613 (39%), Positives = 353/613 (57%), Gaps = 21/613 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I + ++ +W+ ++ G + T ++ H+K + I+++T + Sbjct: 320 YVTIDSEAELDRWIAEIRHAGRFAIDTETTGLNPRHAKLVGISVATAPGR--------AA 371 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRGF 486 ++ L G L L + LKI HN K+D VL R G++ Sbjct: 372 YVPLG-----HEDGPQLPRPLALERLAPVLADPSILKIFHNAKFDLHVLERAGLADATPV 426 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAI 543 +D MLMSY L +GR H + ++ L + + E+ + +S + + + +A Sbjct: 427 DDTMLMSYTLGAGRHGHGMDELSALHLDHRPISYDEVTGTGRSRVSFAAVPIDRATAYAA 486 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 E+++V L+LWLLLRP+L E L +YE +++ ++ V+ ME GI +D+ L+ +SAE + Sbjct: 487 EDADVTLRLWLLLRPRLRTEAALALYETMERRLLSVLLGMERAGIMVDRADLESMSAEFA 546 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + + ++ I L+G FN SPKQLG+ILF ++ P G +TKTG W T A LE++ Sbjct: 547 RRMDDIQREIEKLAGRAFNPGSPKQLGEILFDEMGLPGGKRTKTGAWGTDATVLEELAAS 606 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 + + +LEWRQL K+KSTYAD+L I+ QRVHT +S A T TGRL+S EPNLQNI Sbjct: 607 GHDLPVRVLEWRQLQKLKSTYADALVGEIDIADQRVHTSFSQAITTTGRLSSNEPNLQNI 666 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 PI+T G +IRRAFI+ P K LISADYSQIELR+LAH+A I L + F DIH AA Sbjct: 667 PIRTSEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHARTAA 726 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 E+FG+ +E + P +RR AK INF IIYGIS F LA QL I SEA +I YF R+P I Sbjct: 727 EVFGLPMEGMDPMVRRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARYPEIR 786 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 Y+ +T F R +GYV T FGRR + I + R ER AINAP+QG AADI +RA Sbjct: 787 RYMNETAEFARTHGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADIIKRA 846 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + ++ D L MLLQ+HDELVFE P+++ +++ M+ A +L VPL Sbjct: 847 MVRLPAAIRDAGLDAVMLLQVHDELVFEAPKDQAEATAKLACAVMQGAA----SLSVPLL 902 Query: 964 VNIKVSNNWQEEN 976 V + NW + + Sbjct: 903 VETGIGANWSDAH 915 Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 146/285 (51%), Positives = 193/285 (67%), Gaps = 7/285 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGS FI+RAF+A P ++R DG PVNA+ GFCNML +LL KE +H AVIFD Sbjct: 5 LVLVDGSGFIFRAFHALPPMTRD-DGTPVNAVFGFCNMLARLL----KEHTGTHLAVIFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFRNEI P YKA+RP+ PE L+PQ LVR AT+AF +PAIE+ G EADD+IA+Y Sbjct: 60 AGRTTFRNEIDPRYKAHRPEPPEELVPQFVLVREATRAFAVPAIELDGVEADDLIASYAE 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +K G IIS+DKDLMQL+ + D +K I + V+ K+G+ PE+MV QAL Sbjct: 120 EMKKAGGEAVIISSDKDLMQLLDAHVSMLDPIKSTPIGPDEVVAKYGVTPEQMVDAQALM 179 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR--IKQKKRRENILEYAETARLSR 244 GDS+DN+PG+PGIG K AA L+ E+G+LE+IL A+ +K KRRE+++ YAE AR+SR Sbjct: 180 GDSVDNVPGVPGIGPKGAAQLIAEFGDLESILAAAASGTMKPSKRRESLVAYAEEARISR 239 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 +LV LR DVP+ +P++ L + + L FL A F + R+ Sbjct: 240 RLVELRRDVPLPVPIDELAIAPLHDGMLNDFLDAQGFKSIKARLG 284 >gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001] gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001] Length = 913 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 249/612 (40%), Positives = 362/612 (59%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y + W+Q++E SF T ++D ++ + ++ + ++ V Sbjct: 316 YETVQTWHQFDAWLQRVEAAELTSFDTETTSLDPMTAQIVGLSFA-VEAGHAAYVPVAHR 374 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 D V +D E+L+ LK + E+ K+G ++KYD+ VL YGI MRG E Sbjct: 375 GPDAPVQLPRD---------EVLAKLKPWLESAKHKKVGQHLKYDEQVLANYGIEMRGIE 425 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R HD+ ++A + L +++ I D+++ + E+A Sbjct: 426 HDTLLQSYVLESHRP-HDMDNLALRHLGVKTIKYEDVAGKGAQQIGFDEVALDKAAEYAA 484 Query: 544 ENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ L+L L P+L EK L HVY ++ P V+ +ME TG+ ID + L+ S+EI Sbjct: 485 EDADITLRLHQTLYPQLAAEKTLEHVYRDIEVPTSRVLRKMERTGVLIDAEKLRLQSSEI 544 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 545 AARLIELESEAYVLAGGEFNLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVLQKL-A 603 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 604 EDYPLPKILLEHRGLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVAVTGRLASNDPNLQN 663 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+PP KL+SADYSQIELRI+AHI+ L + F DIHR A Sbjct: 664 IPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATA 723 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AEIF V +VS RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 724 AEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARYPGV 783 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+++T+ + GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 784 ARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 843 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V K +E+ + T+M++Q+HDEL+ EVP+EE+ + + M L+VPL Sbjct: 844 SMIAVQKWIEESNIGTRMIMQVHDELILEVPDEELPEVRKRLPELMCGVA----ALKVPL 899 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 900 VAEVGAGLNWEE 911 Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 105/250 (42%), Positives = 152/250 (60%), Gaps = 6/250 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R DG P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGMINMLRRM----RKEVTAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ YPDYKANRP +P+ L Q+ + +A +A G P + I G EADD+I T + Sbjct: 67 AKGKTFRDDWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLST 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AEK G V + + DKDL QLVS L +T+ EK+D V+ K+G+PPE++V +L Sbjct: 127 EAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y +L+ I+ +A IK +N+ + ++RKL Sbjct: 187 GDTVDNVPGVEKCGPKTALKWLTQYESLDGIVAHAGEIKGAV-GDNLRRALDFLPMARKL 245 Query: 247 VMLRTDVPIT 256 V + +T Sbjct: 246 VTVERHCDLT 255 >gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92] gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92] Length = 922 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 240/614 (39%), Positives = 365/614 (59%), Gaps = 24/614 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y +++ + QW++KL T +F T +++ ++ + + SF +E Sbjct: 324 YDTVLDEATLDQWLEKLSTAELFAFDTETTSLNYMEAELVGV-----------SFAIEPG 372 Query: 428 FIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 V + D G +T+E +L +K E+ K+G ++KYD VL RYGI + G Sbjct: 373 KA-AYVPVAHDYMGAPEQITRETLLEKMKPLLESSDHKKVGQHLKYDMNVLARYGIELTG 431 Query: 486 FE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEH 541 E D ML SYVL+S + HD+ S+A ++L ++I K + ++I Q + Sbjct: 432 IEFDTMLESYVLNSTATRHDMDSLADRYLGLKTIKFEDIAGKGKKQLTFNQIELEQAAPY 491 Query: 542 AIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 A E++++ L+L + +L E L V+ +++P+I V+S +E G +D +L + S Sbjct: 492 AAEDADITLRLHQAINAQLSKDETLTSVFNDIERPLIPVLSHIERNGALVDASMLGEQSI 551 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 E+++ ++ LE YD++G++FNL+SPKQL ILF +L P KT G T + L+++ Sbjct: 552 ELAERMVELERQAYDIAGKEFNLASPKQLQQILFEELSIPVIKKTPKGAPSTAEEVLQEL 611 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 D P+ K ILE R LSK+KSTY D LP IN T R+HT Y A T TGRL+S +PNL Sbjct: 612 AL-DYPLPKLILEHRSLSKLKSTYTDKLPLMINPGTGRIHTSYHQAVTATGRLSSTDPNL 670 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIP++T G++IR AFI+P K+++ADYSQIELRI+AH+++ L F DIHR Sbjct: 671 QNIPVRTQEGRRIRHAFIAPEGYKVVAADYSQIELRIMAHLSQDQGLLDAFSKGADIHRA 730 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 AAE+F V +++VS RR AK INF +IYG+S F LA QL I R +AA YI+ YF +P Sbjct: 731 TAAEVFKVELDQVSDDQRRSAKAINFGLIYGMSAFGLAKQLGIARKDAAQYIEHYFETYP 790 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 G+ Y++ + ++ GYVET+FGRR++ EI + + R ER AINAP+QG+AADI Sbjct: 791 GVQHYMDDIRAKAQEQGYVETLFGRRLYLPEIKARNAMRRQAAERTAINAPMQGTAADII 850 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 +RAM++V K L + +M++Q+HDELVFEV + ++ + + + M A +L V Sbjct: 851 KRAMVTVDKWLAESDFDVRMIMQVHDELVFEVRDTQVDSFVEAVKDKMATAA----DLDV 906 Query: 961 PLKVNIKVSNNWQE 974 PL V V NW++ Sbjct: 907 PLLVEAGVGENWEQ 920 Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 103/264 (39%), Positives = 148/264 (56%), Gaps = 11/264 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L LVDGSS++YRAF+A+ R G+P AI +M+ L+ K+ S AVIF Sbjct: 12 LILVDGSSYLYRAFFASQQADLRNSAGIPTGAIRVVTSMMKSLI----KQYPESPVAVIF 67 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+EI+ +YKA RP +P+ L Q+ + +A G P I +G EADD+I T Sbjct: 68 DAKGKTFRDEIFSEYKAQRPPMPDDLRSQVEPIHKIIKAMGFPLIVEEGVEADDVIGTMA 127 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A +G A I + DKD+ QLV L +T+ + +D+E V K+GIPPE ++ AL Sbjct: 128 REASAKGIATLISTGDKDMAQLVDQHVTLINTMTDTVMDVEGVKDKFGIPPELIIDFLAL 187 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYAET 239 GD +DNIPG+PG+G KTA LLQ G L+++ N +I K + + + E Sbjct: 188 MGDKVDNIPGVPGVGEKTALALLQGIGGLKDLYANLDKIADLGFRGSKSMAKKLEDNREA 247 Query: 240 ARLSRKLVMLRTDVPITIPLEHLI 263 A LS L ++TDV + +E + Sbjct: 248 ADLSYLLATIKTDVELQESVEDFV 271 >gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN] gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN] Length = 913 Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust. Identities = 248/612 (40%), Positives = 366/612 (59%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y + + W++K+ T SF T ++D ++ + +++S + Sbjct: 316 YDTVQTWEQFDGWLEKINTAELTSFDTETTSLDPMTAQIVGLSLSVEAGR--------AA 367 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ L+ H D+ E+L+ LK + E+ K+G ++KYD+ VL YGI MRG E Sbjct: 368 YVPLA-HRGPDAP-VQLPRDEVLARLKPWLESAEHKKVGQHLKYDEQVLANYGIEMRGIE 425 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYV++S R+ HD+ S+A + L +E+ I D+++ + E+A Sbjct: 426 HDTLLQSYVVESHRT-HDMDSLALRHLGVKTIKYEEVAGKGAGQIGFDEVALDKAAEYAA 484 Query: 544 ENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ L+L L P++ EK L +VY ++ P V+ +ME TG+ ID + L+ S+EI Sbjct: 485 EDADITLRLHQALYPQVTAEKTLEYVYRAIELPTSRVLRKMERTGVLIDAEKLRLQSSEI 544 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 545 ATRLIQLESEAYVLAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKL-A 603 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 604 EDYPLPKILLEHRGLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQN 663 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+PP KL+SADYSQIELRI+AHI+ L + F DIHR A Sbjct: 664 IPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATA 723 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AEIF V +VS RR AK INF +IYG+S F LA L I R A YI RYF R+PG+ Sbjct: 724 AEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLAANLGITRDAAKLYIDRYFARYPGV 783 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+++T+ + GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 784 ARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 843 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V +E+ K+ T+M++Q+HDEL+ EVP+ E++ + + M +L+VPL Sbjct: 844 SMIAVQNWIEESKIGTRMIMQVHDELILEVPDAELSDVRKRLPELMCGVA----DLKVPL 899 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 900 VAEVGAGLNWEE 911 Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 102/250 (40%), Positives = 152/250 (60%), Gaps = 6/250 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R DG P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RSPDGNPTGALYGMINMLRRM----RKEVTAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ YPDYKANRP +P+ L Q+ + +A +A G P + I G EADD+I T + Sbjct: 67 AKGKTFRDDWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLST 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AEK G V + + DKDL QLVS L +T+ E +D V+ K+G+PPE++V +L Sbjct: 127 QAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNETLDRAGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L ++ +L+ I+ +A IK +N+ + +++KL Sbjct: 187 GDTVDNVPGVEKCGPKTAIKWLTQFDSLDGIVAHADEIKGAV-GDNLRRALDFLPMAKKL 245 Query: 247 VMLRTDVPIT 256 V + + +T Sbjct: 246 VTVERNCDMT 255 >gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB] gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB] Length = 906 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 237/611 (38%), Positives = 359/611 (58%), Gaps = 21/611 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y +++ W+ K+E + T ++D+F ++ + I++S E Sbjct: 309 YETVLSWPQFDAWLAKIEAAELTALDTETTSLDSFAARIVGISLSVTPG--------EAC 360 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF- 486 +I L+ HT+ +E+L+ LK + E+ K+ N KYD+ V +GI++ G Sbjct: 361 YIPLA-HTAP-GVADQLPREEVLARLKSWLESAAHKKVLQNAKYDQHVFANHGIALSGIA 418 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D ML SYV++S + HD+ + + L +++ I D++ + +A Sbjct: 419 HDTMLQSYVIESDKG-HDLGQLCTRHLGLATIAYEDLCGKGAKQITFDQVDIERAATYAA 477 Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E+S+V L++ +L P+ E L +Y ++ P V+ Q+E GI ID D+L + S E+ Sbjct: 478 EDSDVTLRVHNVLHPQFASEPGLSRIYHEIEMPARQVIWQIERNGILIDSDVLSRQSHEM 537 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + +++LE Y+L+G+ FNL+SPKQL DILF K P KT +G T + L ++ Sbjct: 538 GQKIMALEAQAYELAGQPFNLASPKQLADILFEKQGLPVKKKTPSGGPSTDEEVLSELAL 597 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+K TY D LP +N +T RVHT +S A+ +TGRLAS +PNLQN Sbjct: 598 -DYPLPKLLLEHRSLSKLKGTYTDKLPRMVNPQTGRVHTHFSQAAVVTGRLASSDPNLQN 656 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++++ G+KIR AFI+P ++SADYSQIELRI+AH++ L F + D+H+ A Sbjct: 657 IPVRSEEGRKIRTAFIAPAGSSIVSADYSQIELRIMAHLSGDERLLDAFAHGEDVHKATA 716 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 EIFGV +V P RR AK+INF +IYG+S F LA QL + RS A YI RYF R+PG+ Sbjct: 717 GEIFGVTPLEVGPDQRRVAKSINFGLIYGMSAFGLARQLGLERSAAQTYIDRYFARYPGV 776 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+E+ + RQ+GYVET FGRR+ + +I S + R ERAAINAP+QG+AAD+ + Sbjct: 777 ARYMEEARESARQHGYVETAFGRRLWFPDIRSSNGNRRQGAERAAINAPMQGTAADLIKL 836 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI+V LE L ++++LQ+HDEL+ EVP+ E+ + M + L+VPL Sbjct: 837 AMIAVQNWLEKSALKSRLILQVHDELLLEVPDGELMDVRTHLPRLMGQVA----ELKVPL 892 Query: 963 KVNIKVSNNWQ 973 V + V NW+ Sbjct: 893 VVEVGVGPNWE 903 Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 97/247 (39%), Positives = 145/247 (58%), Gaps = 6/247 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R G P AI G NML +L + + E + AV+FD Sbjct: 4 LLLVDGSSYLYRAFHALPDL-RNKAGEPTGAIYGVLNMLRRLESDYKAE----YKAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ YP+YKA+RP +P+ L+ Q+ + A +A G P + + G EADD+I T Sbjct: 59 AKGKTFRDDWYPEYKAHRPPMPDDLVQQIEPLHAAIKAAGWPLLMVDGVEADDVIGTLAT 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A +G I + DKDL QLVS Y+T+ E +D V K+G+PP K+V AL Sbjct: 119 NATADGIETLISTGDKDLTQLVSSHVRWYNTMSNELLDEAGVEAKFGVPPGKIVDYLALV 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++D +PG+ G KTA L +YG+L+ ++ +A+ I +N+ ++ L ++L Sbjct: 179 GDTVDGVPGVAKCGPKTALKWLAQYGSLDEVVAHANEIG-GVVGQNLRDHLGFLPLGKRL 237 Query: 247 VMLRTDV 253 V + D+ Sbjct: 238 VTVACDL 244 >gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003] gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003] Length = 913 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 250/615 (40%), Positives = 366/615 (59%), Gaps = 27/615 (4%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET- 426 Y + + W+Q++ SF T ++D ++ + + SF VE Sbjct: 316 YETVQTWEQFDAWLQRINAAELTSFDTETTSLDPMTAQIVGL-----------SFSVEAG 364 Query: 427 --IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 ++ ++ H D+ +E+L+ LK + E+ K+G ++KYD+ VL YGI MR Sbjct: 365 HAAYVPVA-HRGPDAP-VQLPREEVLAKLKPWLESAQQKKVGQHLKYDEQVLANYGIEMR 422 Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQE 540 G E D +L SYVL+S R HD+ ++A + L +++ I D+++ + E Sbjct: 423 GIEHDTLLQSYVLESHRP-HDMDNLALRHLGVKTIKYEDVAGKGAQQIGFDEVALEKAAE 481 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A E++++ L+L + P+L EK L +VY ++ P V+ +ME TG+ ID + L+Q S Sbjct: 482 YAAEDADITLRLHQTMYPQLAAEKTLENVYRDIEVPTSRVLRKMERTGVLIDAEKLRQQS 541 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 EI+ L+ LE Y+L+G +FNL SPKQ+G I F KL+ P KT +G T + L++ Sbjct: 542 NEIATRLIELESKAYELAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQK 601 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PN Sbjct: 602 L-AEDYPLPKILLEHRGLSKLKSTYTDKLPRMVNASTGRVHTNYAQAVAVTGRLASNDPN 660 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIP++T G++IR AFI+PP KL+SADYSQIELRI+AHI+ L + F DIHR Sbjct: 661 LQNIPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHR 720 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAEIF V +VS RR AK INF +IYG+S F LA+ L I R A YI RYF R+ Sbjct: 721 ATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARY 780 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 PG+ Y+++T+ + GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ Sbjct: 781 PGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADL 840 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + +MI+V K +E+ + T+M++Q+HDEL+ EVP+EE+ + + M L+ Sbjct: 841 IKLSMIAVQKWIEESNIGTRMIMQVHDELILEVPDEELPEVRKRLPELMCGVAA----LK 896 Query: 960 VPLKVNIKVSNNWQE 974 VPL + NW+E Sbjct: 897 VPLVAEVGAGLNWEE 911 Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 106/256 (41%), Positives = 156/256 (60%), Gaps = 9/256 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R DG P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGMINMLRRM----RKEVTAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ YP+YKANRP +P+ L Q+ + +A +A G P + I G EADD+I T + Sbjct: 67 AKGKTFRDDWYPEYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLST 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AEK G V + + DKDL QLVS L +T+ EK+D V+ K+G+PPE++V +L Sbjct: 127 EAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y +L+ I+ +A IK +N+ + ++RKL Sbjct: 187 GDTVDNVPGVEKCGPKTALKWLTQYESLDGIVAHAGEIKGAV-GDNLRRALDFLPMARKL 245 Query: 247 VMLRTDVPITIPLEHL 262 V + + +T EH+ Sbjct: 246 VTVERNCDLT---EHI 258 >gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M] gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M] Length = 913 Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust. Identities = 249/612 (40%), Positives = 365/612 (59%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y + + W+QK+ SF T ++D ++ + ++ S ++ V Sbjct: 316 YETVQTWEQFDVWLQKINAAEITSFDTETTSLDPMVAQIVGLSFS-VEAGHAAYVPVAHR 374 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 D V +D E+L+ LK + E+ K+G ++KYD+ VL YGI MRG E Sbjct: 375 GPDAPVQLPRD---------EVLAKLKPWLESAEHKKVGQHLKYDEQVLANYGIEMRGVE 425 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R HD+ ++A + L + +++ I D+++ + E+A Sbjct: 426 HDTLLQSYVLESHRP-HDMDNLALRHLGIKTIKYEDVAGKGAQQIGFDEVALDKAAEYAA 484 Query: 544 ENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ L+L L P+L E+ L HVY ++ P V+ +ME +G+ ID + L+Q S+EI Sbjct: 485 EDADITLRLHQTLYPQLAAEETLEHVYRDIEVPTSRVLRKMERSGVLIDAEKLRQQSSEI 544 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y L+G +FNL SPKQ+G I F +L+ P KT +G T + L+++ Sbjct: 545 ATRLIQLESEAYVLAGGEFNLGSPKQIGQIFFERLELPVVKKTPSGAPSTDEEVLQKL-A 603 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 604 EDYPLPKILLEHRGLSKLKSTYTDKLPRMVNANTGRVHTNYAQAVAVTGRLASNDPNLQN 663 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+PP KL+SADYSQIELRI+AHI+ L + F DIHR A Sbjct: 664 IPVRTGEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSEGEDIHRATA 723 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AEIF V +VS RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 724 AEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARYPGV 783 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+++T+ + GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 784 ARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 843 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V K +E+ + T+M++Q+HDEL+ EVP+EE++ + + M L+VPL Sbjct: 844 SMIAVQKWIEESNIGTRMIMQVHDELILEVPDEELSDVRKRLPELMCGVA----ALKVPL 899 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 900 VAEVGAGLNWEE 911 Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 107/256 (41%), Positives = 156/256 (60%), Gaps = 9/256 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R DG P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGMINMLRRM----RKEVTAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ YPDYKANRP +P+ L Q+ + +A +A G P + I G EADD+I T + Sbjct: 67 AKGKTFRDDWYPDYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIDGVEADDVIGTLST 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AEK G V + + DKDL QLVS L +T+ EK+D V+ K+G+PPE++V +L Sbjct: 127 EAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y +L+ I+ +A IK +N+ + ++RKL Sbjct: 187 GDTVDNVPGVEKCGPKTALKWLTQYESLDGIVAHADEIKGAV-GDNLRRALDFLPMARKL 245 Query: 247 VMLRTDVPITIPLEHL 262 V + + +T EH+ Sbjct: 246 VTVERNCDLT---EHI 258 >gi|119503603|ref|ZP_01625686.1| DNA polymerase I [marine gamma proteobacterium HTCC2080] gi|119460665|gb|EAW41757.1| DNA polymerase I [marine gamma proteobacterium HTCC2080] Length = 909 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 242/611 (39%), Positives = 364/611 (59%), Gaps = 24/611 (3%) Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430 +++ + +W+ +E +F T ++D ++ + +A++ + +I Sbjct: 314 VLSLSQLDEWLAAIEEAPLFAFDTETTSLDYMQAEIVGVALAVATDR--------AAYIP 365 Query: 431 LSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-E 487 L+ D G L ++ +L+ L+ E+ K+G N+KYD VL YGI++RG Sbjct: 366 LA----HDYPGAPEQLDRDLVLTRLRPLLEDSQRAKVGQNLKYDANVLANYGIALRGIAH 421 Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIE 544 D ML SYVLD+ S HD+ ++A K+L +E+ I + ++ Q +A E Sbjct: 422 DSMLESYVLDATGSRHDMDTLALKYLGEKTTHFEEVAGKGAKQITFNAVAIEQAAPYAAE 481 Query: 545 NSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 ++ V L+L L PKL E L +Y ++ P++ ++S++E G ++D+ LL S E+ Sbjct: 482 DAAVTLKLHQTLWPKLESEAYLSTLYRDIELPLVPILSRIERNGARVDRQLLADQSHELG 541 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L LE++ +DL+G+ FNL SPKQLG+ILF KL+ P KT G +TA+D+ Sbjct: 542 ERLAILEQSAHDLAGQAFNLGSPKQLGEILFQKLELPVLKKTPKGA-PSTAEDVLAELAL 600 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 D P+ ++E+R LSK++STY D LP+ I+ T RVHT Y A T TGRL+S +PNLQNI Sbjct: 601 DYPLPAVLMEYRSLSKLRSTYTDRLPDMIDPGTGRVHTSYHQAVTATGRLSSSDPNLQNI 660 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 PI+T G++IR+AF +P + +++ADYSQIELRI+AH+++ L F +LD+H AA Sbjct: 661 PIRTAEGRRIRQAFCAPEGRSIVAADYSQIELRIMAHLSQDKGLLGAFGANLDVHSATAA 720 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 E+FGV +E VS RR AK INF +IYG+S F LA QLR+ R EA YI RYF R+PG+ Sbjct: 721 EVFGVPLEDVSSDQRREAKAINFGLIYGMSAFGLAKQLRLGRHEAQAYIDRYFERYPGVA 780 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 +Y+ +T+ GYVET+FGRR++ EIN+ + ER AINAP+QG+AADI + A Sbjct: 781 DYMTQTRELAHSQGYVETLFGRRLYLPEINARNKQRQMAAERTAINAPMQGTAADIIKLA 840 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 MI+V + L + M++Q+HDELVFEV + E+ T + I M +L VPL Sbjct: 841 MIAVDEWLSKTDIDALMIMQVHDELVFEVADTEVATLTSAIPDLMADVA----SLDVPLL 896 Query: 964 VNIKVSNNWQE 974 V V NW + Sbjct: 897 VEAGVGTNWDQ 907 Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 109/309 (35%), Positives = 168/309 (54%), Gaps = 15/309 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L L+DGSS+++RA++A P L+ GL A G M+ +L+ + + + V+ Sbjct: 3 GSLILIDGSSYLFRAYHALPPLTNSK-GLNTGAAKGVVGMVRRLVADYPGDQVV----VV 57 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFRNEIY +YKANRP +PE L Q+ + +A G+P + + G EADD+I T Sbjct: 58 FDAKGPTFRNEIYAEYKANRPPMPEELREQIEPIHAMIRAMGLPLVCVSGVEADDVIGTL 117 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A +V I + DKD+ QLV L +T+ +D V+ K+G+PPE ++ L A Sbjct: 118 ALEAAARQQSVLISTGDKDMAQLVGDHVTLINTMTNTTMDHGGVVDKFGVPPELIIDLLA 177 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GD +DNIPG+PG+G KTA LLQ G L +I + SR+ +K + E+ E Sbjct: 178 LQGDKVDNIPGVPGVGEKTALALLQNLGGLNDIFADLSRVADLAVRGAQKLGARLAEHRE 237 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-- 296 +A LS +L ++TD + + + L+ + + L + K LEF ++ T D+ Sbjct: 238 SAELSYRLATIKTDCELELSTDDLLAKAPDSAALTYWYKELEFKGWLSEALTDDALDSPS 297 Query: 297 --ANIEPVV 303 A +EP+ Sbjct: 298 EVAVVEPLA 306 >gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] Length = 891 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 226/530 (42%), Positives = 326/530 (61%), Gaps = 10/530 (1%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507 ++ L+ + KI N KYD LVL R G+ + G D ML SY+ + SH + + Sbjct: 366 VIDKLRPLMADTQLAKIAQNAKYDLLVLRRAGLEVAGLSCDTMLASYLANPAAKSHGLDT 425 Query: 508 IAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 +A + L Y E+ K I +++ + +A E++++ L+L L P+L Sbjct: 426 LASELLGYRTIGYTEVTGKGKKQIGFEEVEIEKATVYATEDADITLRLADKLEPQLAETG 485 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 ++ ++ P++ V+S ME G++ID D LK +SA++ L +LE I++LSG FN++ Sbjct: 486 QGELFRTVELPLVTVLSDMEWQGVRIDADFLKGLSADMKTRLATLEGEIHELSGRSFNVA 545 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG++LF LK P G KTKTG W T + L + ++PI +L++R ++K+KSTY Sbjct: 546 SPKQLGEVLFEHLKLPRGKKTKTG-WSTDVEVLTNL-AEEHPIAARVLDYRSVAKLKSTY 603 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 D+LP I+ T R+HT ++ A T TGRL+S +PNLQNIPI+T+ G++IR AF+ Sbjct: 604 CDALPKLIHPDTGRIHTSFNQAVTATGRLSSSDPNLQNIPIRTEEGRRIREAFVPAEGNL 663 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L++ADYSQ+ELRILAH+A L + F + DIH A+EIFGV +E V+P+MRR AKTI Sbjct: 664 LLAADYSQVELRILAHMADEPALKESFAHGEDIHARTASEIFGVFLELVTPEMRRQAKTI 723 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF ++YG+S F LA L I R EA YI YF R+P + E++E K R+ YV T+ G Sbjct: 724 NFGVLYGMSAFGLAKSLGIARKEAQTYIDNYFARYPKVLEFMEAKKAEAREKQYVTTLLG 783 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR EI S ++R ER AIN PIQGSAADI + AM+ +H+ L+ KL TKM+LQ+ Sbjct: 784 RRCAVPEIASKNGAVRGYAERNAINYPIQGSAADIIKVAMLRIHERLKAEKLETKMVLQV 843 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDELVF++P E ++ ME A L VPL V++ V NW+E Sbjct: 844 HDELVFDMPAAEQAAVENLVREQMEHA----FELDVPLLVDMGVGRNWRE 889 Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 132/297 (44%), Positives = 196/297 (65%), Gaps = 5/297 (1%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++L+DGSS+IYRA+YA LS GL NA+ GF NML K++++ + + H AVIFD Sbjct: 8 IYLIDGSSYIYRAYYAIRQLSNSK-GLATNAVYGFTNMLLKVVRDEQPD----HLAVIFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR EIYP+YKANR +PE L PQ+P+++ +AF +PA+E++G+EADDIIAT Sbjct: 63 AKGPTFRKEIYPEYKANRSAMPEDLRPQIPVIKELVKAFNMPALELEGYEADDIIATLAR 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + G AVT+++ DKDLMQ+VS L DT+K++ + + V +++G P+K+V +QAL Sbjct: 123 RFAERGMAVTVVTGDKDLMQVVSERVRLLDTMKDQVVGLAEVAERFGGTPDKVVEVQALA 182 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DN+PG+PGIG KTA L+ ++G LEN+L N ++ KKR+EN+ ++ E ARLS+KL Sbjct: 183 GDSSDNVPGVPGIGEKTARTLIAQFGTLENLLANIDQVSGKKRQENLRQFGEQARLSKKL 242 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 V L D+ + + ++ L + N L K LEF KL+ ++ + + VV Sbjct: 243 VSLVDDLSLDVDYDNFDLSEPNHEALTHLFKELEFHKLLQEFSSDERASGEHYQTVV 299 >gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3] gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3] Length = 919 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 250/613 (40%), Positives = 361/613 (58%), Gaps = 21/613 (3%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 +Y + W+ K+E SF T ++D ++ + I++ST Sbjct: 321 NYETVQTWPQFDAWMAKIEAAELTSFDTETTSLDPMVAQIVGISLSTEPGS--------A 372 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 +I ++ H D+ + E+L+ LK + E+ K+G ++KYD VL Y I++ G Sbjct: 373 AYIPVA-HRGPDAP-EQLPRDEVLAKLKPWLESAERRKVGQHLKYDAQVLANYEIALNGI 430 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHA 542 E D +L SYVL+S R+ HD+ S+A + L +E+ I D++ +A Sbjct: 431 EHDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEEVAGKGAQQIGFDEVPLETAAAYA 489 Query: 543 IENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 E++++ LQL L + P++ E L VY ++ P+ V+ +ME TG+ ID L + S E Sbjct: 490 AEDADITLQLHLAMYPQVAREPGLKRVYAEIEMPVSLVLRRMERTGVLIDSARLDKQSHE 549 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I+ L+ LE Y+L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 550 IAVRLIELEREAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL- 608 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ K +LE R LSK+KSTY D LP IN RT RVHT Y+ A +TGRLAS +PNLQ Sbjct: 609 AEDYPLPKLLLEHRGLSKLKSTYTDKLPRMINARTGRVHTNYAQAVAVTGRLASNDPNLQ 668 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T G++IR AFI+ P +++SADYSQIELRI+AHI++ L + F DIHR Sbjct: 669 NIPVRTAEGRRIREAFIASPGCRIVSADYSQIELRIMAHISEDESLLRAFSQGEDIHRAT 728 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+FGV +VS RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG Sbjct: 729 AAEVFGVTPLEVSNDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPG 788 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E T+ + GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 789 VANYMETTRAVAKDKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 848 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +MI+V LE KL ++M++Q+HDELV EVPE+E+ + + M L+VP Sbjct: 849 LSMIAVDGWLERDKLRSRMIMQVHDELVLEVPEDELALVREKLPEMMSGVA----KLKVP 904 Query: 962 LKVNIKVSNNWQE 974 L + +NW+E Sbjct: 905 LVAEVGAGDNWEE 917 Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 102/245 (41%), Positives = 148/245 (60%), Gaps = 6/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVTAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++++ DYKANRP +P L Q+ + A +A G P + I+G EADD+I T + Sbjct: 67 AKGKTFRDDLFADYKANRPSMPTDLALQIEPIHQAVRALGWPLLMIEGVEADDVIGTLAH 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE G V I + DKDL QLV+ L +T+ E +D E VI K+G+PPE++V +L Sbjct: 127 AAEARGMKVVISTGDKDLAQLVTERVTLVNTMSNELLDREGVIAKFGVPPERIVDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y L+ ++ +A+ IK +N+ + L+RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYETLDGVVEHAAEIKGVV-GDNLRRALDFLPLARKL 245 Query: 247 VMLRT 251 V + T Sbjct: 246 VTVET 250 >gi|306822947|ref|ZP_07456323.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679] gi|304553579|gb|EFM41490.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679] Length = 950 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 292/994 (29%), Positives = 488/994 (49%), Gaps = 90/994 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P+ + G NA+ GF ML +++ + H AV F Sbjct: 16 LLVVDGHSLAFRAFFALPVENFSTSAGQATNAVWGFATMLSQVIDTEHPD----HLAVAF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRN + P YK R PE LL QLPL++ A G+ IE G+E DD+I T Sbjct: 72 DVKGGTFRNMMLPQYKGTRDAAPEDLLSQLPLIQRMLSALGVTYIEQPGYEGDDVIGTLA 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + +K G+ ++S D+D QL++ T LY D++H V++K+ + PE+ Sbjct: 132 TMGDKAGYRTLVLSGDRDAFQLINDNITVLYP--GHHFKDLKHMTSDAVVEKYHVTPEQY 189 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236 L AL G++ DNIPG+PG+G AA + +YG L+ I+ +A I KK RENI Sbjct: 190 PDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLDQIIEHADEITGKKGEALRENI--- 246 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCD 295 E +L+R + L D+ + + L+ L + RL LEF + NRV T++ Sbjct: 247 -EQVKLNRSVNALVRDLELDVTLDDLTFGTVDTARLNDLFSKLEFGIRTRNRVLKTFNA- 304 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 T G+ ++ E +R + + + + +++ P L Sbjct: 305 ------------GTTTAGVTVQPESNRVVLPEVMTITHGDELRTWVDANMPPADEHLHGD 352 Query: 356 QKLSQYPINNDSYTKIVNTKDI-----QQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 + + I D+ + I NT WV + E + + M + K I Sbjct: 353 DEDANPAI--DAGSLIGNTMTCTNAVNHSWVLQAEGVAKPGNASMASLMLMVNGKGAQI- 409 Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 + DD+ I + L+ + H + H K Sbjct: 410 ----EHVDDS----------------------------IANELQHMLDGYHRSMVVHGYK 437 Query: 471 YDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-YTRKEILKSRKSSI 528 + +L GI++ D L Y++ + + A +L + ++ ++ + ++ Sbjct: 438 EQQHLLESVGITLPTPLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGTL 497 Query: 529 PIDKI-SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEIT 586 +D + S Q ++ I+ + + L+ ++ + + ++ P+ V+ ME Sbjct: 498 DLDDMDGSSNTQADELQRHAAIVDMLANVLADLLDQRAQFGLLKSIELPVSKVLYGMEHA 557 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G Q+D L ++ + + + +E ++ +GE+ NL SPKQL ILF + KTK Sbjct: 558 GAQVDMIRLTEMRDQFAADARQAQEIAWESAGERVNLQSPKQLQKILFEDMGLKPTKKTK 617 Query: 647 TGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 +G + T A L+ + N N + +L R+ +K+K +L + N R R+H Sbjct: 618 SGSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQI-VQTLIDATNPRDGRIH 676 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759 T + TGRL+S++PNLQNIP + G++IR AF+ + L+S+DYSQ+ELRI+A Sbjct: 677 TTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRSAFVPGEGYESLLSSDYSQVELRIMA 736 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 ++ L + F + D H+ VA+ ++G+ +E+++ R H K +++ + YG+S + LA Sbjct: 737 DLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAYGLSTYGLAQ 796 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL+I EA +YF F +HEY+E + R+ GY ETI+GRR ++ + SP ++ Sbjct: 797 QLKISPKEAESLRNQYFATFGKVHEYLESLVSTAREKGYTETIYGRRRYFPGLKSPNRAV 856 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ERAA+NAPIQGSAADI + AMI SL D L ++++LQIHDELV E+ E Sbjct: 857 RDAAERAALNAPIQGSAADIMKIAMIRASDSLRDACLKSRIILQIHDELVVEIAPGEAEQ 916 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 A+ ++ ++ME A + + VPL + + ++WQ Sbjct: 917 ATALVRNAMEHA----VTMAVPLDASTGIGSDWQ 946 >gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] Length = 677 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 248/622 (39%), Positives = 369/622 (59%), Gaps = 21/622 (3%) Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 S I+ Y I++ W++KL+ +F TD++D + + ++ + +D+ Sbjct: 69 SAVTIDRSQYETILDEASFNAWLEKLKAAELFAFDTETDSLDYMVANLVGLSFA-IDEGI 127 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 V ++D +D +L LK E++ K+G N+KYD VL R Sbjct: 128 AAYVPVAHDYLDAPEQLDRDW---------VLEQLKPILEDDAQAKVGQNLKYDASVLAR 178 Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKIS 534 YGI M+G + D ML SYV +S HD+ S+A ++L ++ ++I K+ + ++I Sbjct: 179 YGIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLTFNQIE 238 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 Q +A E+++V L+L L + EKL VYE ++ P++ V+S++E TG+ ID Sbjct: 239 LEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPVLSRIERTGVLIDDM 298 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L S EI+ L LE+ Y+++ ++FN++SPKQL ILF K+ P KT +G T Sbjct: 299 KLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKKTPSGTPSTN 358 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + L+++ D P+ K ILE+R L+K+KSTY D LP IN T RVHT Y A T TGRL Sbjct: 359 EEVLQELAL-DYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRL 417 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIPI+ + G++IR+AF++P K+++ DYSQIELRI+AH++ L F + Sbjct: 418 SSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRD 477 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIH AAEI GV+I++VS + RR AK +NF +IYG+S F LA QL IPR EA Y+ Sbjct: 478 GKDIHAATAAEIMGVSIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMD 537 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 +YF R+PG+ +Y+E T++ GYVETIFGRR+H EI S R ERAAINAP+Q Sbjct: 538 KYFERYPGVMQYMEDTRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQ 597 Query: 894 GSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 G+AADI ++AM+ V + + E+ K+L+Q+HDELVFEV E ++ + ME A Sbjct: 598 GTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKVQKLMESAA 657 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 L+VPL +NW + Sbjct: 658 ----ELKVPLVAEAGHGDNWDQ 675 >gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400] gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400] Length = 913 Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust. Identities = 248/612 (40%), Positives = 366/612 (59%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y + + W+ K+ SF T ++D ++ + +++S + Sbjct: 316 YDTVQTWEQFDAWLGKINAAELTSFDTETTSLDPMIAQIVGLSLSVEAGR--------AA 367 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ L+ H D+ E+L+ LK + E+ K+G ++KYD+ VL YGI MRG E Sbjct: 368 YVPLA-HRGPDAP-VQLPRDEVLARLKPWLESAGHKKVGQHLKYDEQVLANYGIEMRGIE 425 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYV++S R+ HD+ S+A + L +E+ I D+++ + E+A Sbjct: 426 HDTLLQSYVVESHRT-HDMDSLALRHLGVKTIKYEEVAGKGAGQIGFDEVALDKAAEYAA 484 Query: 544 ENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ L+L +L P++ EK L +VY ++ P V+ +ME TG+ ID + L+Q S+EI Sbjct: 485 EDADITLRLHQVLYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSEKLRQQSSEI 544 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 545 ATRLIQLESEAYVLAGGEFNLGSPKQIGQIFFEKLELPVVKKTPSGAPSTDEEVLQKL-A 603 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 604 EDFPLPKILLEHRGLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLASNDPNLQN 663 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+P KL+SADYSQIELRI+AHI+ L F DIHR A Sbjct: 664 IPVRTGEGRRIREAFIAPAGHKLVSADYSQIELRIMAHISGDESLLHSFSQGEDIHRATA 723 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AEIF V +VS RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 724 AEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYIDRYFARYPGV 783 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+++T+ + GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 784 ARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 843 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V K +E+ K+ T+M++Q+HDEL+ EVP+ E++ + + M +L+VPL Sbjct: 844 SMIAVQKWIEESKIGTRMIMQVHDELILEVPDAELSDVRKRLPELMCGVA----DLKVPL 899 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 900 VAEVGAGLNWEE 911 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 101/250 (40%), Positives = 153/250 (61%), Gaps = 6/250 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R DG P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPDGGPTGALYGMINMLRRM----RKEVTAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ Y DYKANRP +P+ L Q+ + +A +A G P + I+G EADD+I T + Sbjct: 67 AKGKTFRDDWYADYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDVIGTLST 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AEK G V + + DKDL QLVS L +T+ EK+D V+ K+G+PPE+++ +L Sbjct: 127 EAEKRGMNVIVSTGDKDLAQLVSDHVTLINTMTNEKLDRAGVLAKFGVPPERIIDYLSLV 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L ++ +L+ I+ +A IK +N+ + +++KL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQFDSLDGIVAHADEIKGAV-GDNLRRALDFLPMAKKL 245 Query: 247 VMLRTDVPIT 256 V + + +T Sbjct: 246 VTVERNCDLT 255 >gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] Length = 896 Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust. Identities = 254/619 (41%), Positives = 376/619 (60%), Gaps = 29/619 (4%) Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLDQKDDTS 421 NN SY I + + W+ KLE S F I T+T +D ++ + I+++ ++D+ S Sbjct: 297 NNKSYEIITTHQQLNHWLNKLEQ--SQQFCIDTETTNLDVMQAELVGISLAV--EEDNAS 352 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 + I L+ HT G L KE +L+ LK EN KIG NIKYD VL YG Sbjct: 353 Y------IPLA-HTD----GSTQLVKEEVLTALKPILENPAIGKIGQNIKYDYSVLKNYG 401 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536 I+++G D ML SYVL+SG HD+ S+A K+L Y + +++ + D+I Sbjct: 402 ITLQGIRYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGAKQLRFDQIPVE 461 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 + +A E++++ L+L L P ++ + L +V ++ P++ V++ ME+ G+ ID +L+ Sbjct: 462 KAGIYAAEDADITLRLHHKLYP-MLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILE 520 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 + + + + + SLE+ L+G+ FNL+SPKQL +ILF + K P AKT TGQ +TA+ Sbjct: 521 KHGSRLKEQMKSLEQEAVQLAGKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQ-PSTAES 579 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + Q D + ILE+R LSK+ STY D+LP IN +T RVHT Y+ A TGRL+S Sbjct: 580 VLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSS 639 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIPI+++ G+ IR AFI+P +++ADYSQIELRI+AH+++ L + F N D Sbjct: 640 DPNLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWD 699 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+EIF N+E VS + RR AK +NF +IYG+S F LA Q+ + R +A YI YF Sbjct: 700 IHAATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHYIDTYF 759 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+P + EY+E+T+ Q GYVET+FGRR++ EINS + ER AIN P+QG+A Sbjct: 760 RRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGPMQGTA 819 Query: 897 ADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 ADI ++ M++V K + KM++Q+HDELVFEV +E + II ME+ Sbjct: 820 ADIIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECHAIIHKLMEQT---- 875 Query: 956 INLRVPLKVNIKVSNNWQE 974 + L VPL V+I +NW + Sbjct: 876 VKLSVPLVVSIGTGSNWDD 894 Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 117/304 (38%), Positives = 175/304 (57%), Gaps = 23/304 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS+ +RAF+A P L+ G P AI G NM+ K++++ + E IA V+FD Sbjct: 5 LILIDGSSYFFRAFHALPPLTNS-KGQPTGAIYGVANMIKKIIKDYQPEEIA----VVFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 TFR+E YP+YKA+RP +P+ L Q PL++L QA G+P + I G EADD+I T Sbjct: 60 AKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQL-LQAMGLPLLIIDGVEADDVIGTLA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A ++G V I + DKD+ QLV+ L +T+ +DI+ V K+G+ PE+++ L Sbjct: 119 KQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA----R 241 GDS+DNIPG+ G KTA L EY L+N+L +A+ I K I EY + Sbjct: 179 IGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEIGGK-----IGEYLRASIPHLP 233 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-------ATTYDC 294 LS+KLV ++TD+ + + L L+ + + +LI + LEF + + +T + Sbjct: 234 LSKKLVTIKTDLDLPLNLNQLMPKPADSEQLIKLTRELEFKSWLKELLQEEENQKSTKEM 293 Query: 295 DAAN 298 DA N Sbjct: 294 DAGN 297 >gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605] gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605] Length = 986 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 335/1032 (32%), Positives = 512/1032 (49%), Gaps = 121/1032 (11%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L LVDG S +R+FYA L+ K DG P + GF L LL NS K Sbjct: 10 LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGRPTSVTYGF---LKALLDNS-KTLQPEGV 64 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120 A+ FD TFR++ +YKA+R PE+ L L ++ +P GFEADD+ Sbjct: 65 AIAFDTAEPTFRHKADANYKAHRDVAPEVFFQDLEQLQQILETHLQLPLCMAPGFEADDV 124 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170 + T A G+ V I+S D+DL QLV + LY + I E V+ Sbjct: 125 LGTLANRAADSGWGVRILSGDRDLFQLVDDSRDIAVLYMGGGPYAKSSGPTLIREEGVLG 184 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQE-------YGNLENILIN--- 220 K G+ P+K+V L+ALTGDS DNIPG+ G+G KTA LL++ Y LE + Sbjct: 185 KLGVIPDKVVDLKALTGDSSDNIPGVRGVGPKTAINLLKDNSDLDAVYATLEEVEAEGPK 244 Query: 221 ASRIKQKKR-RENILEYAETARLSRKLVMLRTDVPI----TIPLEHLILEDCNGPRLISF 275 ASR K +E + + A LSRKL + DVP+ ++PL + D +G L S Sbjct: 245 ASRGAIKGALKEKLRADRDNAYLSRKLAEILVDVPLPKEPSLPLSSV---DADG--LSSC 299 Query: 276 LKALEFTKLINRVA---TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFS 332 L+ LE L+ +V + + T T+ Sbjct: 300 LEDLELNSLLRQVGGFVAAFSEGGYGANAEAAAAKPPHRSATTEPAAAETATEPVTNDDV 359 Query: 333 SLSDQTSKINSEQTPQKLFLERLQKL--SQYPINNDSYTKIVNTKDIQQWVQKLETIGSA 390 + K+ +T ++RL S P+ D+ T +N Sbjct: 360 GVPALKPKLIQTETALDALVQRLMACTDSSLPVAFDTETTDLNP---------------- 403 Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450 F ++ + I I + D ++ I L S+DS + + +L Sbjct: 404 -----------FRAELVGIGICWGEDLDALAY------IPLGHKGSEDSIPEQLSLETVL 446 Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 + L + + + K N KYD+L+L R+GI++ G D +L Y+ D+ + H + +A Sbjct: 447 TALAPWLASSNHPKTLQNAKYDRLILLRHGIALEGVVIDTLLADYLRDA-SAKHGLELMA 505 Query: 510 QKWL-----SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IV 562 ++ S+T K + +P++ S + + +V +L LLLR +L + Sbjct: 506 EREFGFQPTSFTDLVGKKQTFADVPLEPAS-----LYCGMDVHVTRRLALLLRHQLETMG 560 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 +LL + E++++P+ V+++ME TGI+ID L+ +S E+ L LE + +G FN Sbjct: 561 PQLLPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEEMGSTLQQLESDAKAAAGVDFN 620 Query: 623 LSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 L+SPKQLG++LF L +TKTG + T A LE++ D+P++ +L+ R LSK+ Sbjct: 621 LASPKQLGELLFDTLGLDRKKSRRTKTG-FSTDATVLEKLG-NDHPVVPLVLDHRVLSKL 678 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 KSTY D+LP + T RVHT ++ A T TGRL+S PNLQNIP++T+ ++IR+AF+ Sbjct: 679 KSTYIDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQ 738 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 L+SADYSQIELRIL H++ L + + D+H + A + ++ ++VSP RR Sbjct: 739 EGWTLLSADYSQIELRILTHLSGEKVLQEAYRGGDDVHALTARLL--LDKDEVSPDERRL 796 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 KTINF +IYG+ R A + + +SEA +++ +Y R+P + ++E + GYVE Sbjct: 797 GKTINFGVIYGMGAQRFARETGVSQSEAKEFLVKYKQRYPKVFAFLELQERLALSRGYVE 856 Query: 861 TIFGRR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADITRR 902 TI GRR H+D EI+ + + + RAA NAPIQGS+ADI + Sbjct: 857 TILGRRRPFHFDRNGLGRLLGKDPLEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKV 916 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AM+ + +L L ++LLQ+HDELV EV + + T ++V +ME+A L VPL Sbjct: 917 AMVQLQDALLRQGLPAQLLLQVHDELVLEVAPDALETTRDLVVRTMEQA----FELSVPL 972 Query: 963 KVNIKVSNNWQE 974 V V NW E Sbjct: 973 VVETGVGANWME 984 >gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01] gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01] Length = 960 Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust. Identities = 245/617 (39%), Positives = 367/617 (59%), Gaps = 27/617 (4%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV--- 424 Y ++ + W+QKL+ +F T ++DA ++ + + SF V Sbjct: 359 YQLVLEQAQLDAWLQKLKQAELIAFDSETTSIDAQQAQLVGL-----------SFAVKAG 407 Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG--IS 482 E +I L+ S + +L+ LK E+ K+G + KYD VL I Sbjct: 408 EAAYIPLA--HSYMGVPQQLDRDAVLNALKPILEDPAKAKVGQHAKYDINVLANASTPIM 465 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538 ++G D ML SYVLDS + HD+ S+A K+L+++ ++I + D+I+ Q Sbjct: 466 VQGVAFDTMLESYVLDSTATRHDMDSLALKYLNHSTIRFEDIAGKGAKQLTFDQIALEQA 525 Query: 539 QEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E+++V L+L L +L + L V ++ P++ V++++E G +D LL + Sbjct: 526 GPYAAEDADVTLRLHQELWGRLEAIPSLAKVLRDIEIPLVPVLARIERNGALVDAKLLGE 585 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E+ + L+ LE ++++GE+FNL+SPKQLG IL+ KL +P +KT GQ T L Sbjct: 586 QSVELGEKLVELERKAFEIAGEEFNLASPKQLGVILYEKLGYPVISKTAKGQPSTAEAVL 645 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 ++ D + K ++++R LSK+KSTY D LP IN RT R+HT Y A TGRL+S + Sbjct: 646 AELAEQDYELPKVLMQYRSLSKLKSTYTDKLPEQINPRTGRIHTSYHQAVAATGRLSSSD 705 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+T G++IR+AF++P KL++ADYSQIELRI+AH+AK L F LD+ Sbjct: 706 PNLQNIPIRTAEGRRIRQAFVAPKGYKLMAADYSQIELRIMAHLAKDEGLLDAFRYDLDV 765 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H+ AAE+FGV +++V+ RR AK INF +IYG+S F LA Q+ + R EA YI RYF Sbjct: 766 HKATAAEVFGVPLDQVTSDQRRKAKAINFGLIYGMSAFGLAKQIDVERKEAQAYIDRYFA 825 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ Y+E T+ + GYVET++GRR++ EI++ ++R ERAAINAP+QG+AA Sbjct: 826 RYPGVLTYMESTRAQAAEQGYVETVYGRRLYLPEIHAQNQAMRKGAERAAINAPMQGTAA 885 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI +RAMI+V L+D + +++LQ+HDELV EV EE I S + M A + Sbjct: 886 DIIKRAMIAVDGWLQDSGIDARIILQVHDELVLEVREELINEVSAKLKSLMSGAA----D 941 Query: 958 LRVPLKVNIKVSNNWQE 974 L VP+ V + V NW E Sbjct: 942 LDVPMLVEVGVGANWDE 958 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 109/288 (37%), Positives = 160/288 (55%), Gaps = 14/288 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L+ G+P A+ G NML L RK+ S FAV+FD Sbjct: 31 LVLVDGSSYLYRAFHALPPLTTSK-GMPTGAVKGVLNMLKSL----RKQYPDSPFAVVFD 85 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ +YKANRP +P+ L Q+ + + +A G+P + ++G EADD+I T Sbjct: 86 AKGGTFRDELFAEYKANRPSMPDELRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLAR 145 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A E V I + DKD+ QLV P L +T+ D + V +K+G+ PE ++ AL Sbjct: 146 QAAGEKRDVVISTGDKDMAQLVCPHVTLVNTMTGSVYDADGVKEKFGVGPELIIDYLALM 205 Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA L Y NL+ + R K + E+ E Sbjct: 206 GDKVDNIPGVPGVGEKTALGLLVGVGGGLDVLYANLDKVPELPIR-GAKGLPAKLEEHRE 264 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 A LS +L ++TDVP+ I ++ L + + L+ LEF ++ Sbjct: 265 MAYLSYQLATIKTDVPLNIEIDSLHPGEPDQAALVELYGQLEFKNWLD 312 >gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 896 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 253/619 (40%), Positives = 376/619 (60%), Gaps = 29/619 (4%) Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT--MDAFHSKPIAIAISTLDQKDDTS 421 NN SY I K + W+ KLE S F I T+T +D ++ + I+++ ++++ S Sbjct: 297 NNKSYEIITTHKQLNHWLNKLEQ--SQQFCIDTETTNLDVMQAELVGISLAV--EEENAS 352 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 + I L+ HT G L KE +L+ LK EN KIG NIKYD VL YG Sbjct: 353 Y------IPLA-HTD----GSTQLVKEEVLTALKPILENPAIGKIGQNIKYDYSVLKNYG 401 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDS 536 I+++G D ML SYVL+SG HD+ S+A K+L Y + +++ + D+I Sbjct: 402 ITLKGIGYDTMLESYVLNSGAGRHDMDSLALKYLGYKTISYEDVAGKGAKQLRFDQIPVV 461 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 + +A E++++ L+L L P ++ E L +V ++ P++ V++ ME+ G+ ID +L+ Sbjct: 462 KAGIYAAEDADITLRLHHKLYP-MLDESLRNVLHDIEIPLLTVLADMEMHGVLIDPVILE 520 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 + + + + + SLE+ L+G+ FNL+SPKQL +ILF + K P AKT TGQ +TA+ Sbjct: 521 KHGSRLKEQMKSLEQEAVQLAGKAFNLNSPKQLQEILFDEQKLPVVAKTPTGQ-PSTAES 579 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + Q D + ILE+R LSK+ STY D+LP IN +T RVHT Y+ A TGRL+S Sbjct: 580 VLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSS 639 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIPI+++ G+ IR AFI+P +++ADYSQIELRI+AH+++ L + F N D Sbjct: 640 DPNLQNIPIRSEEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAFANGWD 699 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+EIF N++ VS + RR AK +NF +IYG+S F LA Q+ + R +A YI YF Sbjct: 700 IHAATASEIFQTNLDAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHYIDTYF 759 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+P + EY+E+T+ Q GYVET+FGRR++ EINS + ER AIN P+QG+A Sbjct: 760 RRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGPMQGTA 819 Query: 897 ADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 ADI ++ M+++ K + KM++Q+HDELVFEV +E + II ME+ Sbjct: 820 ADIIKKTMLAISSWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECRAIIHKLMEQT---- 875 Query: 956 INLRVPLKVNIKVSNNWQE 974 + L VPL V+I +NW + Sbjct: 876 VKLSVPLVVSIGTGSNWDD 894 Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 113/280 (40%), Positives = 167/280 (59%), Gaps = 16/280 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS+ +RAF+A P L+ G P AI G NM+ K++++ + E IA V+FD Sbjct: 5 LILIDGSSYFFRAFHALPPLTNSK-GQPTGAIYGVANMIKKIIKDYQPEEIA----VVFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 TFR+E YP+YKA+RP +P+ L Q PL++L QA G+P + I G EADD+I T Sbjct: 60 AKGKTFRDEWYPEYKAHRPPMPQELSSQFQPLIQL-LQAMGLPLLIIDGVEADDVIGTLA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A ++G V I + DKD+ QLV+ L +T+ +DI+ V K+G+ PE+++ L Sbjct: 119 KQATEQGIPVVISTGDKDMAQLVNEHVSLINTMSNYSMDIDGVKAKFGVTPEQIIDYLTL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA----R 241 GDS+DNIPG+ G KTA L EY L+N+L +A+ I K I EY + Sbjct: 179 IGDSVDNIPGVEKCGPKTAVKWLTEYQTLDNLLAHANEIGGK-----IGEYLRASIPHLP 233 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 LS+KLV ++TD+ + + L L+ + + +LI + LEF Sbjct: 234 LSKKLVTIKTDLDLPLNLNQLMPKPADSEQLIKLTRELEF 273 >gi|257460112|ref|ZP_05625216.1| DNA polymerase I [Campylobacter gracilis RM3268] gi|257442553|gb|EEV17692.1| DNA polymerase I [Campylobacter gracilis RM3268] Length = 938 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 299/991 (30%), Positives = 497/991 (50%), Gaps = 85/991 (8%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D F +R +YA L K DG P ++GF + + N KE + + D Sbjct: 6 IIDTFGFFFRLYYAMSGLKTK-DGKPSGMVSGFAS----FIANLSKEFKSDYIIFALDSK 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR++I P+YK NR P LL QLP+ + G+ ++ +G+EADD+IA+ + Sbjct: 61 GKTFRSDIDPNYKTNRQAPPPALLQQLPVCIEMIEKMGLYSLGREGYEADDLIAS---VV 117 Query: 129 EKEGFA--VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +K G + I+++DKDL QL+ +Y K+ E ++++G+ PE++V A+ Sbjct: 118 KKYGATHKINIVTSDKDLYQLIGENVKIYSHGKKMLYGREECLQRYGVYPEQIVDFLAIC 177 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPG+ GIG K A LL E+G+L+ I N R+ Q K+RE ++E ++A +S++L Sbjct: 178 GDSADNIPGVRGIGDKGAKKLLDEWGSLDEIYSNLDRLPQNKQREYLIEGKQSAYISKRL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK--LINRVATTYDCDAANIEPVVL 304 L ++ I LED P+ K E K +NR+ + N L Sbjct: 238 ATLYDELEIPP------LEDAKFPQQNPLFKIREILKDYALNRLLSALSLQEQN----GL 287 Query: 305 DINTTENKGIAIETEI------------DRDTTIKTSQFSSLSDQTS----KINSEQTPQ 348 D+ E KG ++ + R +I + L Q S SE+ + Sbjct: 288 DL-WGEGKGAGAKSSVLGAGGKGAGAESSRGGSILGAAVGGLDGQNSIPGGSACSEKNSE 346 Query: 349 KLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIA 408 F + + I + ++ + + ++ SF T ++D+ +K + Sbjct: 347 SAFKTPFEPIC-----------ITDAVELARLCESIDAETLVSFDTETTSIDSKSAKIVG 395 Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468 + + +++ + ++ S D+ K + Y+ +G N Sbjct: 396 FSFA-FNEERAYYVPLAHSYLGAPAQISSDAA-KAAIDSLFRGYV-----------VGQN 442 Query: 469 IKYD-KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526 +KYD ++V + + I F D M+++++LD ++ + SI+ ++L Y K Sbjct: 443 LKYDFEIVKNNFNIEPPARFADTMVLAWLLDPA-NAVGMDSISPRYLGYETVHFGDVVKK 501 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 + +A E++ V L+L+ L+ L+ L + + L+ P + V+ QM+ Sbjct: 502 GETFASVELDAATIYASEDAWVTLRLYFKLK-GLLEPALFKLAQELEFPFVRVLWQMQRC 560 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 GI+ID +++K++ K+L +L + IY+L GE+FN++SP QLG +LF +L P+ +TK Sbjct: 561 GIKIDVEMIKRLIGRNEKSLRALTDEIYELCGEQFNINSPAQLGAVLFERLGLPAAKRTK 620 Query: 647 TGQW--KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHTFY 703 TG ++ +DL ++ P + IL++R+L K++STY + L + RV + + Sbjct: 621 TGYSTDESVLKDLTALH----PAVGKILDYRELFKLQSTYCEPLLQLALADAQNRVRSNF 676 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 T TGRLAS PNLQNIP + + +R F++ LIS DYSQIELR+LAH ++ Sbjct: 677 LQTGTATGRLASKNPNLQNIPARGTFAKNVRDCFLAEGGYSLISLDYSQIELRLLAHFSR 736 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L F DIH A IFG P R AK+INF +IYG+ +L+ L I Sbjct: 737 DPALLAAFRADEDIHARTAISIFG----DAQPAHRTIAKSINFGLIYGMGAGKLSDSLGI 792 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 R+EA YI+RYF F I E+++ K+ + +GYV T+FGRR ++D N+ + + Sbjct: 793 ARAEAKGYIERYFAAFSTIKEFLQSIKSDAKADGYVSTLFGRRRYFDFANARNNMVYASY 852 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER A+N QGSAADI ++AM+ + L +++LQIHDEL+FEV ++ Sbjct: 853 EREAVNTKFQGSAADIIKKAMVDISPLLNGE---ARLILQIHDELIFEVRDDLAQGFGAR 909 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ A +L VPLK ++ ++ W E Sbjct: 910 AQEIMQSAA----SLNVPLKTSLNIAKRWGE 936 >gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 922 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 301/978 (30%), Positives = 503/978 (51%), Gaps = 74/978 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S I RA+Y L+ DG P+ A+ F N++ + KE +H AV FD Sbjct: 6 LLLIDGNSLINRAYYGGTELNLA-DGTPIGAVYTFFNIVLRY----AKELHITHLAVAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR++++ YK+ R + + L Q +++ G + G+EADDI+ T Sbjct: 61 LPEPTFRHKLFHSYKSGRKPMSDDLATQFTFLKMILPELGWACYSLAGYEADDILGTLAK 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPEKMVCLQ 183 + E V I+S D+D +QLV + + + + + +G P+ + + Sbjct: 121 QSCSEMEHVYILSGDRDTLQLVDSNISVIYPGRHSAVTFYTPARLQEDFGCTPKSFITYK 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD+ D +PG+PGIG +A+ ++ ++ +L+ I N S K + + ++E TA + Sbjct: 181 ALLGDTSDAVPGVPGIGKVSASKIVGQFSSLDEIYENLSAFSPKVQAK-LVEGRNTAYQA 239 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 LV + +P+ L L L + + +K F L+ ++ Y AA +E Sbjct: 240 LALVTINCAIPLKWALADLSLAGSHD-KWREVIKKYSFNSLLEKMNVLYS--AAQVE--- 293 Query: 304 LDINTTENKGIAI-ETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 T+ K A+ +++ D I ++ +SL ++ S TP Sbjct: 294 -----TDKKETALADSDTIADEKIGATEKNSLPNE-SGTQETSTP--------------- 332 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFH-SKPIAIAISTLDQKDDTS 421 + + +NT + + W++ I I+ + + + + P +DQ Sbjct: 333 ----ALYRFINTDEWRTWLENASPI-----LIMAERYPSIYIADPEQHVYICIDQ----- 378 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 TIF D + + +GK L + L++F L + + Y + I Sbjct: 379 ----TIFPDF--YAWSELSGKKILCFSLKQILQRF---PALLSENNCVDYTTGTIIDLSI 429 Query: 482 SMRGFEDIMLMSYVLDSG---RSSHDIAS--IAQKWLSYTRKEILKSRKSSIPIDKISDS 536 D ++Y+ D R ++ I+S K L I S ++ ++ + Sbjct: 430 LAYACGDAQKVAYLSDLAELYRLNYPISSENTGMKELPENNCSI-SSAEAEAQAQAVAVA 488 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 + + I N I+ ++ L++ K+ + L ++ ++D P+++V++QME G+ +D+ +L+ Sbjct: 489 DLNKELISYFNTIIAVYSLVKSKIESQGLNYLVSQVDLPLVEVLTQMERDGVAVDEAVLQ 548 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 + + S + + + IY L+G +FNL+SP+QL ++LF +L P G K K+G + T+A+D Sbjct: 549 RQTEAFSSEIADIADEIYKLAGHEFNLNSPRQLAEVLFNELGLPGGKKLKSG-YSTSAED 607 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 L + +PI+ IL +R LSK+ ST+ L +I R+HT + T TGRL+S Sbjct: 608 LMHLQ-DLHPIVDLILRYRMLSKLLSTFIVGLHKYI-AADHRIHTTFHQTLTQTGRLSSS 665 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP +T+ G++IR AFI+ P LI ADYSQIELR+LAH++ T + + F D Sbjct: 666 DPNLQNIPARTEEGRRIRAAFIAAPGCILIDADYSQIELRLLAHLSGDTAMLKAFAAKED 725 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH + AA +F ++ V+ + RR KTINFSI+YGIS F LA L I +EA +YI Y+ Sbjct: 726 IHALTAARVFHMDPVDVTSEHRRVGKTINFSIVYGISAFSLAQDLHISVAEAKNYIAEYY 785 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 +P I Y+ + +GYVET+F RR + E+ S + R ER A+N PIQG+A Sbjct: 786 ATYPQIKAYLNDLVERAKIDGYVETMFKRRRYIPELKSKNYNRRLFGERVAMNTPIQGTA 845 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI R AM+++ + L + KL + M+LQIHDELV EVPE E ++++ + ME+ I Sbjct: 846 ADIMRLAMVNLARKLREKKLKSHMILQIHDELVLEVPEPEFAEVAELLRNEMERV----I 901 Query: 957 NLRVPLKVNIKVSNNWQE 974 +L+V L V ++ NW E Sbjct: 902 DLKVSLPVELEYGKNWLE 919 >gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383] gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383] Length = 917 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 246/612 (40%), Positives = 364/612 (59%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I + W K++ +F T ++D ++ + ++ S K Sbjct: 320 YDTIQTWEQFDAWFAKIDAAALTAFDTETTSLDPMLARLVGLSFSVESGK--------AA 371 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ ++ H D + L E+L+ LK + E+ K+G ++KYD VL Y I++ G E Sbjct: 372 YLPVA-HRGPDMPEQLPL-DEVLARLKPWLESADRKKVGQHLKYDAQVLANYDIALNGIE 429 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYV++S R+ HD+ S+A + L +++ I D+++ +Q E+A Sbjct: 430 HDTLLESYVVESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALTQAAEYAA 488 Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL L P++ E LLHVY ++ P+ V+ +ME TG+ ID L+ S EI Sbjct: 489 EDADITLQLHHALYPQVAREPGLLHVYREIEMPVSLVLRKMERTGVLIDDVRLQAQSTEI 548 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y+L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 549 ATRLIELEAQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYAQAVAVTGRLASNDPNLQN 667 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+ P +++SADYSQIELRI+AHI+ L + F DIHR A Sbjct: 668 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATA 727 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGV 787 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y+E T++ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 788 AQYMEDTRSVAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V L KLA++M++Q+HDELV EVP+ E++ + + M L+VPL Sbjct: 848 SMIAVDDWLTRDKLASRMIMQVHDELVLEVPDGELSLVREKLPEMMCGVA----KLKVPL 903 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 904 VAEVGAGANWEE 915 Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 102/256 (39%), Positives = 151/256 (58%), Gaps = 6/256 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKANRP +P L Q+ + A +A G P + ++G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + VI K+G+PPE+++ AL Sbjct: 127 EAERHGMNVVVSTGDKDLAQLVTDHVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y +L+ ++ +A IK +N+ + L R L Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLAQYDSLDGVIEHAGDIKGVV-GDNLRRALDFLPLGRTL 245 Query: 247 VMLRTDVPITIPLEHL 262 V + T +T LE + Sbjct: 246 VTVETACDLTPHLESI 261 >gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli] gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli] Length = 898 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 247/619 (39%), Positives = 377/619 (60%), Gaps = 24/619 (3%) Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 P+N +Y+ I++ + ++++L SF T +++ ++ + ++ + +K Sbjct: 296 PVN--AYSLILDEQSFHVFLKQLTQANGWSFDTETTSLNVMQAELVGLSFAIGGEK---- 349 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 ++I L+ H D+ L ++ +L LK FE+ +KIGH++KYD +L YG Sbjct: 350 ----PVYIPLA-HDYPDAP--QQLNRQWVLQQLKPLFEDPKQIKIGHHLKYDMNILAHYG 402 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDS 536 I +RG + D ML SY+LDS + H + S A K L + +EI ++I+ Sbjct: 403 IQLRGIDFDTMLESYLLDSASNQHSLDSAALKHLDHKTIRFEEIAGKGAKQKTFNQINLQ 462 Query: 537 QVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 +A E++ + L+L L+P+L V L VY ++ P++ V+++ME G+ ID LL Sbjct: 463 DAGPYAAEDAAIALRLHETLKPQLDNVVGLSTVYTEIEMPLVTVLARMERHGVLIDAPLL 522 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 K+ S I+K LL+LE+ + L+G+ FNL SPKQL ILF P KT GQ +T++ Sbjct: 523 KKQSRSIAKRLLTLEQQAFQLAGKPFNLGSPKQLQTILFDDHGLPILEKTPKGQ-ASTSE 581 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 ++ Q P+ K IL+ R+LSK+KSTY D LP IN +T RVHT Y A+ +TGRL+S Sbjct: 582 NVLQALALTFPLPKIILKHRRLSKLKSTYTDKLPEQINPKTGRVHTSYHQAAVVTGRLSS 641 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP +T G+KIR+AFI+PP +++ADYSQIELRI+AH ++ L + F L Sbjct: 642 SDPNLQNIPARTHEGRKIRQAFIAPPGYFILAADYSQIELRIIAHFSQDKGLLKAFAQGL 701 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH+ AAE+ + +E+V+ + RR AK INF ++YG+S F LA QL I R +A +YI+RY Sbjct: 702 DIHQATAAEVLNIPLERVTHEQRRSAKAINFGLMYGMSAFGLARQLGISREDAKNYIERY 761 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+PG+ Y+E+ + + YV T+FGRR++ INS S R +ERAAINAP+QGS Sbjct: 762 FDRYPGVKRYMERIRQRAHEQRYVTTLFGRRLNLAFINSNDSLQRRASERAAINAPLQGS 821 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI ++AMI + L KL M++Q+HDELVFE+ E ++ A ++I E + Sbjct: 822 AADIIKKAMIRIDAELIKKKLDAHMIMQVHDELVFEIAEHDLQRAKRLI----ENLMVHT 877 Query: 956 INLRVPLKVNIKVSNNWQE 974 L VPL V+I++ +NW + Sbjct: 878 TTLSVPLVVDIQIGSNWNK 896 Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 107/276 (38%), Positives = 160/276 (57%), Gaps = 8/276 (2%) Query: 7 LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LVDG+S++YRAF+A PL++ K G P AI G +ML KL+ KE+ + V+F Sbjct: 5 FILVDGTSYLYRAFHALPPLMNSK--GEPTGAIYGVISMLRKLM----KENDPEYIVVVF 58 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR +Y +YKA+RP +P+ L Q+ + + G+P + G EADD+I T Sbjct: 59 DAKGKTFREALYSEYKAHRPLMPDDLQVQIEPLYALIRGLGLPLVIHSGVEADDVIGTLA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A + V I + DKD QLV L +T+ ++D + VI K+G+ PE++ +L Sbjct: 119 TKALQHLRPVLISTGDKDFAQLVCEEITLVNTMTNTRLDRQGVIDKFGVAPEQITDYLSL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GD +DN+PG+P +G KTAA L YGNLE+++ NAS IK K +N+ + LSR+ Sbjct: 179 IGDPVDNVPGVPNVGPKTAAKWLNHYGNLESLIKNASAIK-GKVGDNLRASRDKLLLSRQ 237 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 LV ++TDV ++ LE + + L ++ K LEF Sbjct: 238 LVTIKTDVDLSFDLEKFRPQAPHHSVLSAYYKKLEF 273 >gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105] gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105] Length = 927 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 237/590 (40%), Positives = 360/590 (61%), Gaps = 23/590 (3%) Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT-KEI 449 +F TD+++ +++ + ++ S K + +I L T QD T + L E+ Sbjct: 353 AFDTETDSLEPMNARIVGLSFSV---KPGVGY-----YIPL---THQDLTAEPQLPLAEV 401 Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASI 508 L++LK +FE+ KI N KYD V+ + + ++G FED ML SY+L++ + H + ++ Sbjct: 402 LAFLKPWFEDSDSPKIAQNAKYDLHVMANHDVWVKGLFEDTMLASYILEAHKP-HGMDAL 460 Query: 509 AQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEK 564 A +WL+Y +E+ S I D++ ++A E++ V L+L L+ +L V + Sbjct: 461 ALRWLNYNTIKYEEVAGKGASQITFDQVPIDTATKYAAEDAEVTLRLAHALKAELDKVPE 520 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L +Y ++ P V+ ++E G+ ID D L+ SAEI+ L +EE ++L+G FNL+ Sbjct: 521 LAKLYRDVELPFGQVLFEVERNGVLIDSDKLEAQSAEIADKLKLIEEQAFELAGGSFNLN 580 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQ+G++LF KL P KT +G T + L ++ D P+ +LE R L+K+KSTY Sbjct: 581 SPKQIGELLFDKLGLPVVKKTASGAPSTDEEVLSKL-AEDYPLPAKLLEHRSLAKLKSTY 639 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 D LP +N RT RVHT Y+ A +TGRLAS +PNLQNIP++T G+++R AFI+ P Sbjct: 640 TDKLPRMVNARTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRVREAFIAAPGCV 699 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L+SADYSQIELRI+AHI+ L F LDIH A+EIFGV + +V+ RR AK I Sbjct: 700 LVSADYSQIELRIMAHISGDEALIHAFNEGLDIHSATASEIFGVGLNEVTSDHRRTAKVI 759 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF +IYG+S F LA L I R A YI RYF R+PG+ ++++ + +++G+V+T+FG Sbjct: 760 NFGLIYGMSAFGLAGNLGITREAAKLYIDRYFARYPGVAKFMDNVRAQAKEDGFVQTVFG 819 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR+ EI SP R ERAAINAP+QG++AD+ + AM+ + L+ KL +KM++Q+ Sbjct: 820 RRLWLPEIKSPNGPRRAGAERAAINAPMQGTSADLIKMAMVELSAWLKAEKLNSKMIMQV 879 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDE++FEVP+ E+ + + M + LRVPL+V V NNW+E Sbjct: 880 HDEVIFEVPKGELELIQKRVPEIMTQVA----KLRVPLEVGCGVGNNWEE 925 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 105/249 (42%), Positives = 151/249 (60%), Gaps = 4/249 (1%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH-FAVIF 65 L LVDGSS++YRAF+A P L R G P AI G NML +L + + I S+ A +F Sbjct: 4 LLLVDGSSYLYRAFHAMPDL-RNRAGEPTGAIYGMVNMLRRLRADYNTDDITSNCIACVF 62 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D P TFR++IYP+YKANR +PE L Q+P + T+A G P + G EADD+I T Sbjct: 63 DAPGKTFRDDIYPEYKANRASMPEDLAAQIPHIHEVTRAMGWPIVMEPGIEADDVIGTLA 122 Query: 126 YIAEKEGFAVTIIST-DKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 +A ++GF I+ST DKD+ QLV+ L DT+K + + V +K+G+ PE++V Sbjct: 123 QVALEQGFDEVIVSTGDKDMAQLVNDKVRLVDTMKNAVMTRDSVFEKFGVYPEQIVDYLT 182 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD++DN+PG+ +G KTAA L EY L+ ++ NA +I K EN+ + + + Sbjct: 183 LVGDTVDNVPGVEKVGPKTAAKWLAEYKTLDGVVANADKIG-GKVGENLQKALDWLPTGK 241 Query: 245 KLVMLRTDV 253 LV ++TD Sbjct: 242 SLVTIKTDC 250 >gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath] gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath] Length = 906 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 239/616 (38%), Positives = 358/616 (58%), Gaps = 24/616 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y +++ +W++KLE +F T ++D ++ I + SF VE Sbjct: 308 YQAVMDPAAFDRWLEKLEAAELFAFDTETSSLDYMRAEVIGL-----------SFAVEP- 355 Query: 428 FIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 V + D G +L L+ E+ K+G ++KYD VL +GI +RG Sbjct: 356 GAAAYVPLAHDYPGAPPQLDRAMVLERLRPLLEDPGKAKLGQHLKYDANVLLNHGIMLRG 415 Query: 486 FE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEH 541 D ML SYVL+S + HD+ S+A+++L + +++ IP ++S + Sbjct: 416 IRHDTMLESYVLNSTATRHDMDSLAERYLDRKTLHYEDVAGKGAKQIPFARVSVEDACRY 475 Query: 542 AIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 A E+++V L L L P+L + L VYE ++ P++ V+S++E G+ +D L + S Sbjct: 476 AAEDADVTLCLHRALWPRLESIPSLRAVYETIEIPLVPVLSRIERAGVLVDVYKLAEQSR 535 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 E+ + + +E ++GE FNL SPKQ+ IL+ KL P KT TGQ T L+ + Sbjct: 536 ELERRMAEVEAEARAVAGETFNLGSPKQIQTILYDKLGLPVIKKTPTGQPSTDESVLQDL 595 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 + + ILE+R LSK+KSTY D LP+ +N + RVHT Y A TGRL+S +PNL Sbjct: 596 -AETFELPRLILEYRSLSKLKSTYTDKLPHQVNPVSGRVHTSYHQAVAATGRLSSSDPNL 654 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIP++T+ G++IR+AF++PP KL++ADYSQIELRI+AH++ L F D+HR Sbjct: 655 QNIPVRTEEGRRIRQAFVAPPGHKLLAADYSQIELRIMAHLSGDANLLAAFAEDADVHRA 714 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 AAE+FGV +E+V+ RR AK INF +IYG+S F LA QL I + A YI YF R+P Sbjct: 715 TAAEVFGVALEEVTSSQRRSAKAINFGLIYGMSAFGLAKQLGIQQKLAQGYIDLYFARYP 774 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 G+ Y+++T+ R+ GYVET+FGRR+H +I S R ER AINAP+QG+AADI Sbjct: 775 GVRAYMDRTRESARELGYVETLFGRRLHVPDIQSRNGQRRQYAERTAINAPMQGTAADII 834 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 +RAMI++ +E +M++Q+HDELVFEV E+ ++ A+ + M +A L V Sbjct: 835 KRAMIALDAWIESSGAPLRMIMQVHDELVFEVAEDFVSEATATVREHMSRAA----ELAV 890 Query: 961 PLKVNIKVSNNWQEEN 976 PL V+I +NW E + Sbjct: 891 PLMVDIGTGDNWDEAH 906 Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 117/287 (40%), Positives = 165/287 (57%), Gaps = 6/287 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSSF+YRAF+A P L+ H G P A+ G NML KLLQ +H AV+FD Sbjct: 10 LVLVDGSSFLYRAFFALPPLTNSH-GEPTGAVYGVINMLRKLLQTYD----GAHIAVVFD 64 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P FR+E++ YKA+RP +P+ L Q+ + +A G+P + G EADD+I T Sbjct: 65 APGRNFRDELFEHYKAHRPPMPDDLRSQIEPLHQVVRAMGLPMLIEPGVEADDVIGTLAR 124 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + GF V I + DKD+ QLV L +T+ + ++D+ VI K+G+PPE++V AL Sbjct: 125 QAVERGFRVVISTGDKDMAQLVCDRVTLENTMFDSRLDVNGVIVKFGVPPERIVDYLALV 184 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPG+P +G KTAA L EYG+L+ ++ A I K EN+ E LSR+L Sbjct: 185 GDTSDNIPGVPKVGPKTAAKWLAEYGSLDALIARAGEIGGKT-GENLRASLELIPLSREL 243 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 +R D+P+ + E L + L LEF L+ ++ D Sbjct: 244 ATIRCDLPLPLTPESLERRPPDKAALRELYTRLEFKTLLRQLDAEAD 290 >gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725] gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725] Length = 907 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 311/983 (31%), Positives = 502/983 (51%), Gaps = 100/983 (10%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+D S+ +YRA++A K++ P A+ GF N L +++ + I + F V Sbjct: 6 LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFTNTLLSIIKEFSPDYIGAAFDV---KR 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 A R+EIY +YKA R +PE LL Q+P + F I +I G+EADD++ T + Sbjct: 61 ASLKRSEIYSEYKAQRDAVPEDLLLQIPRIEEVLDGFNINRFKIDGYEADDVMGTLSQKL 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-------EHVIKKWGIPPEKMVC 181 EG V +++ DKDL Q++ + K E D E V++ G+ + + Sbjct: 121 SNEGIEVIVVTGDKDLAQILDKNVKIALLGKGEGGDKFKILETDEDVVEYLGVTSKMIPD 180 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236 L GDS D IPG+ IG K A +L++YGNLE + N ++ + K N+ E Sbjct: 181 FFGLIGDSSDGIPGVRKIGPKKAVPMLEKYGNLEGVYENIDKLTEIPGIGKSLIINMKED 240 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E A +SRKL + D+P+ ++ L + +L+ K LEF L+ ++ Sbjct: 241 KEIAFISRKLATIEKDIPLECKIDDLKY-SIDNKKLLDLFKTLEFRVLVKKMGL------ 293 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 ++ +++E + T+++ FS+ S Q ++ Q+ Sbjct: 294 -------------DSPALSVEEKAPEPTSLQMGLFSTPSVQENESVEPVAKQR------- 333 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 ++T + + + +Q+ KL A K + AF A+S+L Sbjct: 334 ----------NFTVVDDEEKFKQFSDKL-----AGEKRL-----AFFYSGTGFAVSSL-- 371 Query: 417 KDDTSFKVETIFIDLS----VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 KDD +I L H + D L +K+FF N + I +N K Sbjct: 372 KDD-------FYIPLGHTPLFHKNLD-----------LDKVKEFFRNSDSIFITYNFK-- 411 Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532 L GI ++ + ++++Y L S ++ + I + LS + Sbjct: 412 --PLLNEGIKIKNMDMDLMIAYHLISSQTKEGV-EIPLEQLSGIDIAPYSEKFGKEAPGN 468 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 +S + + +E S I++ + + ++ + LL V + + P+I V+S ME GI+ID Sbjct: 469 LSTEEYGKFLVERSKGIMETYGIAMEEIKGKNLLEVLKETEMPLIKVLSAMERKGIKIDP 528 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 + E+ L +L++ I++++GE+FNL+SPKQL ++LF KL KTKTG T Sbjct: 529 VYFAKYEKELEILLNNLQKKIFEIAGEEFNLNSPKQLAEVLFFKLNLDPVKKTKTG-LST 587 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE++ I ILE+R+ +K+K+TY D+LP + R R+HT ++ T TGR Sbjct: 588 DEEVLEKLKNDGVEIASYILEYRKYAKLKNTYVDALPKLADSR-DRLHTTFNQIGTTTGR 646 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S PNLQNIP+KTD G KIR+ FI+ L+ DYSQIELR+LA ++K L ++ Sbjct: 647 LSSSNPNLQNIPVKTDEGMKIRQGFIADNGNVLMGIDYSQIELRVLAELSKDENLIAAYK 706 Query: 773 NSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 N+ D+HR+ A +IF + + E+VS + R AKTINFSIIYG + F L+ +L I + EA DY Sbjct: 707 NNEDLHRVTAKKIFELEDGEEVSREQRIIAKTINFSIIYGKTAFGLSKELGITQKEATDY 766 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I RYF ++P + ++ + + +NGY ET FGRR + I S +I+N ER A+N+ Sbjct: 767 INRYFEQYPKVKDFEKSIIAYAEKNGYTETYFGRRRIIEGILSKNKNIKNQAERMAVNSV 826 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AA+I ++ MI + K +E +K +LLQ+HDEL+FE+ EE++ I + M + Sbjct: 827 IQGTAAEILKKVMIEIFKVIE-NKEDISLLLQVHDELIFEIKEEKVEEYRTTIENIMRNS 885 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 K + V L +N + NW E Sbjct: 886 V--KFD-DVVLDINTNIGKNWAE 905 >gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] Length = 986 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 329/1044 (31%), Positives = 532/1044 (50%), Gaps = 136/1044 (13%) Query: 3 KENHLFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 K+ L LVDG S +R+FYA L+ K DG P + GF L LL N + SI Sbjct: 5 KKPTLLLVDGHSLAFRSFYAFSKGGEGGLTTK-DGFPTSVTYGF---LKSLLDNCK--SI 58 Query: 58 ASHFAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGF 115 I FD TFR++ P+YKANR P++ L L + ++ + + G+ Sbjct: 59 EPKGVTIAFDTAEPTFRHKEDPNYKANRDVAPDIFFQDLDQLEEILKESLNLSICKAPGY 118 Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDI 165 EADD++ T A ++G++V I+S D+DL QLV LY + + I+ Sbjct: 119 EADDVLGTLANDAAEKGWSVRILSGDRDLFQLVDDERDIAVLYMGGGPYAKSGSPKLINE 178 Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI-------- 217 + V +K G+ P K++ L+ALTGDS DNIPG+ G+G KTA LL E +L+ + Sbjct: 179 KGVREKLGVNPNKVIDLKALTGDSSDNIPGVKGVGPKTAINLLNENLDLDGVYKSLQELE 238 Query: 218 ----------LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267 + A R+K K ++N A LS+KL + +PI P + LE Sbjct: 239 KEGEKAKRGAIKGAVRLKLKADKDN-------AYLSKKLAEILIKIPID-PKVNYNLEGI 290 Query: 268 NGPRLISFLKALEFTKLINRVAT---TYDCDAA---NIEPVVLDINTTENKGIAIETEID 321 N +L L+ LE L +V+T + D + ++ P +IN NK Sbjct: 291 NESKLAENLERLELHSLSKQVSTFKAIFSKDGSSKKDLNPSSKEINIANNK--------- 341 Query: 322 RDTTIKTSQFSSLSDQTSKINSEQTP--QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQ 379 K S+FS+L++ +++ P + + L++L+ + + Q Sbjct: 342 ----TKNSEFSTLNE------TKEIPRIEPKIINNLEELNNF---------------VAQ 376 Query: 380 WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS 439 ++ + + T +++ F ++ + + + D ++I + +D Sbjct: 377 IIKHTDAKKPIAIDTETTSLNPFKAELVGLGFCFGESLKDI------VYIPIGHKNKEDD 430 Query: 440 TGK----NTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMS 493 + N L +E++ L+ +F + K N KYD+L+L R+GI + G D +L Sbjct: 431 LIEINQINQLKIEEVIFALQDWFSSNENPKTLQNAKYDRLILLRHGIILNGVVMDTLLAD 490 Query: 494 YVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550 Y+ D+ H + IA + + K +I+K + +D S S + + + Sbjct: 491 YICDA-TLKHSLDEIAYREFGFKPKSFSDIVKKGEDFSYVDIKSASMYCGMDVYLTRKLA 549 Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610 +++ R K KL+++ + +++P+ V++++E TGI ID LK +S E++K L ++E Sbjct: 550 IIYIN-RLKETSIKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLSLELTKRLNTIE 608 Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPII 668 + +Y+++G +FNLSSPKQLG++LF KL KTKTG W T LE++ D+PI+ Sbjct: 609 KEVYNIAGSEFNLSSPKQLGELLFEKLDLDRKKSRKTKTG-WSTDVAVLEKLES-DHPIV 666 Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728 K I+E R +SK+ +TY D+LP I K T RVHT ++ A T TGRL+S PNLQNIP++T+ Sbjct: 667 KIIIEHRTISKLLNTYVDALPKLIEKETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTE 726 Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 ++IR+AF+ KL+SADYSQIELRIL H++ L + + D+H + A +F Sbjct: 727 FSRRIRKAFLPQKDWKLLSADYSQIELRILTHLSGEEVLKNAYLKNEDVHSLTAKILF-- 784 Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848 + + RR KTINF +IYG+ R A + EA ++ ++ R+P + +++E Sbjct: 785 EKDAIDADERRIGKTINFGVIYGMGAQRFARSTGVSLIEAKYFLSKFKERYPAVFKFLEY 844 Query: 849 TKNFVRQNGYVETIFGRRIHY------------------DEINSPKSSIRNINERAAINA 890 + G+VET+ GRR ++ D + ++ + RAA NA Sbjct: 845 QERLALSQGFVETLLGRRRYFHFNKNGLGRLLGTPPNEIDLTTARRAGMEAQQLRAAANA 904 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGS+ADI + AMI +H +L + LA K+LLQ+HDELV EV +++ ++ ++ME Sbjct: 905 PIQGSSADIIKLAMIQLHSALRETGLAAKILLQVHDELVLEVNPKDLEETKLLVQNTMEN 964 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A + L VPL V V NW E Sbjct: 965 A----VKLSVPLIVETGVGVNWME 984 >gi|227496059|ref|ZP_03926368.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226834387|gb|EEH66770.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 899 Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust. Identities = 281/973 (28%), Positives = 488/973 (50%), Gaps = 96/973 (9%) Query: 17 YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75 +RAF+A P+ S G NA+ GF +M L++ + +H AV FD P TFR + Sbjct: 3 FRAFFALPVDSFTTSTGQATNAVHGFTSMFLSLIE----QEAPTHVAVAFDLPGGTFRTQ 58 Query: 76 IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135 Y +YK R + P+ + Q+ L+ A G+ ++ GFEADDI+AT A+ E V Sbjct: 59 EYAEYKGTREQTPQPFIGQIELIEEVLAALGVRSVTAPGFEADDILATLAAQAQDEDMEV 118 Query: 136 TIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191 I S D+D Q V+ + +K ++ + V +++G+PPE+ L AL G++ D Sbjct: 119 LICSGDRDSFQTVTQRCTVLYPIKGVSTLRRMTPQEVTERYGVPPERYPHLAALVGETSD 178 Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251 N+PG+PG+G KTAA + Y LE ++ +A +IK K +N+ ++ + +R+L LRT Sbjct: 179 NLPGVPGVGPKTAAKWINLYDGLEGVIAHAEQIKGKAG-QNLRDHLDDVIRNRRLNRLRT 237 Query: 252 DVPITI-PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTE 310 D+ + I P+ L + + + +++LEF L R Sbjct: 238 DLDLGIDPVADLRMPLADRSAVARVMESLEFRTLHQRA---------------------- 275 Query: 311 NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTK 370 ++ FS +D ++ E +P+++ L+ L + + + Sbjct: 276 ---------------LRVLSFSDTADHAEEVTGEGSPRQV----LEDLEVFTLGRE---- 312 Query: 371 IVNTKDIQQWVQKLETIGSASFKIITD---TMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 V ++ W+ + +G A I D T+ +A+S ++ Sbjct: 313 -VAPGQVEGWIHR--HLGDAGVTIGVDVVGTLAPGRGDAQVVAVSD---------GARSL 360 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF- 486 +D+++ +QD L + + K+ + K L GI + G Sbjct: 361 VVDMTLLLAQDE-----------EALDQLLSDPDHPKVVADAKGSWHALRGRGIGLDGVV 409 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR-KSSIPIDKISDSQVQEHAIEN 545 D L +Y+ + S+D+A++A++WL + + ++ +++ ++ ++D + + Sbjct: 410 ADPALAAYLCRPEQRSYDVATLAERWLGLDLESLAQAEPQTAFDLESLADGTPPRTLLAS 469 Query: 546 SN---VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 + +L L +L ++ + +Y L+ P+ ++QME GI +D +L E+ Sbjct: 470 ARRAACLLPLQEVLGEQMAQRGAVTLYTELEMPVAACLAQMEDAGIAVDDSVLAAREVEL 529 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + E + +G + NLSSPKQL ++F +LK P +TK G + T A+ L + Sbjct: 530 DARVTHAAEAAFAAAGHELNLSSPKQLQAVIFDELKMPKTRRTKRG-YTTDAEALAALYA 588 Query: 663 -GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 +P ++++LE R K++ T + L + R+HT + TGRL+S +PNLQ Sbjct: 589 KTGHPFLEHLLEHRDAIKLRQTV-EGLRKAVLA-DGRIHTTFQQTVAATGRLSSTDPNLQ 646 Query: 722 NIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 NIP +T+ G +IR AF + + L++ADYSQIE+RI+AH++ L F + D+HR Sbjct: 647 NIPARTEEGMRIREAFTVGQGQECLLTADYSQIEMRIMAHLSGDQALIDAFRSGEDLHRY 706 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 VAA + G+++ V+ + R H K +++ + YG+S + LA QL I +EA+ YF RF Sbjct: 707 VAAMVHGIDVADVTAEQRSHVKAMSYGLAYGLSTYGLARQLGIDNAEASALRDAYFARFG 766 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 +H+Y+E R++G+ +T+FGRR + ++ S R + ERAA+NAPIQGSAADI Sbjct: 767 AVHDYLESVVAQARRDGWTQTMFGRRRYLPDLTSDNRQRREMAERAALNAPIQGSAADIV 826 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 ++AMI V +L + LA+++LLQIHDEL+ E+ E +++ M A L V Sbjct: 827 KKAMIDVADALAESALASRVLLQIHDELLLEIAPGEAEAVEELVRARMSGAA----QLSV 882 Query: 961 PLKVNIKVSNNWQ 973 PL V++ W+ Sbjct: 883 PLDVSVGRGATWR 895 >gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] Length = 913 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 317/991 (31%), Positives = 496/991 (50%), Gaps = 102/991 (10%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L ++D F +R+FYA P L + G P + GFCN LLQ+ K+ ++ A Sbjct: 2 NTLSVIDTFGFFFRSFYALPPL-KNSQGFPTGLLVGFCN----LLQSLYKDPSCTYIAFA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 + R +IY +YKANR PE L QLP+ G I I+G+EADD++A+ Sbjct: 57 LEGGGRNKRRDIYSEYKANRQAAPEELRLQLPIAIEWIAKMGFLNISIEGYEADDVVASI 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 +A + V IIS DKDL QL+ T +YD + ++ I ++K+G+ P+ + Q+ Sbjct: 117 NKVANAQNITVRIISHDKDLYQLIDENTYIYDPIGKKDIKEAQCLQKYGVYPKNFIDYQS 176 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAETAR 241 L GDS DN+ G+ GIG K+A L+Q +G++E++ ++ + + I E + A Sbjct: 177 LVGDSSDNVMGVKGIGAKSAQKLIQRFGSIESLYARIDEVESATTPRIAKLIKEGKDNAF 236 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF--LKALEFTKLINRVATTYDCDAANI 299 LS+KLV L ++ I L ++ + N P L F L+ E +I+++ + Y+ Sbjct: 237 LSKKLVTLYDNLLENIDLNKCLMPESN-PMLKIFDELEKYELKNIISKIQSPYE------ 289 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 R T K++Q S Q + Q+PQ + ++ + S Sbjct: 290 ----------------------RYTQKKSAQMGIGSLQGT-----QSPQNIESKKDEAFS 322 Query: 360 QYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 P D+ + D I Q V+ F +D +D ++ + + D K+ Sbjct: 323 FTPHLLDTLESVEFVLDSIPQGVR-------VGFDCESDGLDLQEAQLVGFSF-CFDGKN 374 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 V ++ G +E S + + F H L IGHN+K+D +++R Sbjct: 375 AYYVPVGHRYL---------GVGNQLNLQEAKSAISRIFT--HPL-IGHNLKFDFSLIYR 422 Query: 479 -YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ-----KWLSYTRKEILKSRKSSIP-- 529 G+ G D M++S++ DS IA + KW ++T + S S +P Sbjct: 423 TLGLEHIGKIYDSMILSWLYDS------IAPVGLDKQMLKWFNHT----MISFDSVVPKG 472 Query: 530 --IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLDKPMIDVVSQME 584 +++ ++A E++ +L+ L + + +L + + L+ P I V+ ME Sbjct: 473 ENFSQVNIITATQYAAEDAAATFKLYHRLEDEFHKREWGGILELAQNLEYPFIKVLMDME 532 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 + GI++D LL+ + + S+++ L + IYDL GE FNL+SP+QL ILF L G Sbjct: 533 LEGIRVDIGLLEILKDKSSEHIAELSQKIYDLCGETFNLNSPQQLAHILFENLGLKPGRS 592 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHTFY 703 K G T + L I +P+I IL++R+ +K+KSTY + L T R+HT + Sbjct: 593 VKGG-LSTDEKTLLAI-IDSHPVIDLILDYRESNKLKSTYIEPLLRLGRTNETHRIHTSF 650 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 T TGRL+S PNLQNIP++ + G+KIR+AFIS LIS DYSQIELR+LAH K Sbjct: 651 LQNGTATGRLSSKSPNLQNIPVRREEGRKIRQAFISKEGHSLISIDYSQIELRLLAHFCK 710 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L + F DIH AA +FG E+ + Q R AK+INF +IYG+ +L+ L+I Sbjct: 711 DPSLVESFMQDKDIHFETAARLFG---EQEAMQKRFIAKSINFGLIYGMGSKKLSQTLQI 767 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 P +A +YI+ YF FP I +++ + F+ +NGY +T+ G R ++D + N Sbjct: 768 PLKQAKEYIESYFALFPTIKDFLNAQEEFLLENGYSQTLLGHRRYFDFKRATDFMKANF- 826 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 R IN+ QGSAAD+ + +M +HK L KMLLQ+HDEL+FE P E ++ Sbjct: 827 LREGINSIFQGSAADLIKLSMCEIHKRYAKSDL--KMLLQVHDELIFEAPSERAENYAKE 884 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + M L VPLK I + NW E Sbjct: 885 VADIMNSI----YKLEVPLKCGIAIGTNWAE 911 >gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187] gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187] Length = 910 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 243/615 (39%), Positives = 371/615 (60%), Gaps = 25/615 (4%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I+ D+ +W +KL+ SF T+++D ++ + ++ + D ++ Sbjct: 311 YDTILTDADLTRWFEKLQQAELFSFDTETNSLDYIQAQVVGLSFAV--APGDAAY----- 363 Query: 428 FIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 + + D G L +E L+ LK E+ LK+G ++K+D+ VL +GI ++G Sbjct: 364 -----LPLAHDYLGAPEQLDREQTLAKLKPLLEDPTRLKVGQHLKFDRNVLRNHGIHLQG 418 Query: 486 FE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEH 541 D ML SYVL+S S H++ +A+K+L+YT + ++ + +++ + + Sbjct: 419 IAFDTMLESYVLNSTASRHNMDDLAKKYLNYTTQTFEDVAGKGVKQLTFNQVELEKAAFY 478 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 A E++++ L+L L P++ E L + ++ P+ +V+S ME TG ID LL+ S Sbjct: 479 AAEDADITLRLHQTLWPQVEKEPALKSLLLEMELPLAEVLSDMERTGALIDPFLLQNQSQ 538 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 +I L LE ++++G FNL SPKQLG++LF KL+ P KT G +TA+++ Q Sbjct: 539 QIEVRLAELESQAHEIAGGPFNLGSPKQLGEVLFEKLQLPVIKKTPKGA-PSTAEEVLQE 597 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 D P+ K +LE R LSK+KSTY D LP I T RVHT Y A T TGRL+S +PNL Sbjct: 598 LAYDYPLPKLLLEHRSLSKLKSTYTDKLPLMIAPSTGRVHTSYHQAVTATGRLSSSDPNL 657 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIP++T+ G++IR+AF++ K+++ADYSQIELRI+AH+++ L Q F + DIHR Sbjct: 658 QNIPVRTEEGRRIRQAFVADHGYKIVAADYSQIELRIMAHLSEDDGLLQAFAHGQDIHRA 717 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 AAEI + E V+ + RR+AK INF +IYG+S F LA QL IPR EA Y+ RYF R+P Sbjct: 718 TAAEIMNITPEAVTSEQRRNAKAINFGLIYGMSAFGLAKQLGIPRGEAQRYMDRYFERYP 777 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 G+ Y+E+T+ Q GYVET+FGRR++ +I + +R ERAAINAP+QG+AADI Sbjct: 778 GVLTYMERTREQAEQAGYVETLFGRRLYLPDIKAKNMGLRKAAERAAINAPMQGTAADII 837 Query: 901 RRAMISVHKSLEDHKLAT-KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 +RAMI + ++ T +M++Q+HDELVFEV E+++ +I M A +L+ Sbjct: 838 KRAMIKLADWIKTCDNGTIRMVMQVHDELVFEVREDKLDAYVPVIRQYMMDAA----SLK 893 Query: 960 VPLKVNIKVSNNWQE 974 VPL V I V +NW + Sbjct: 894 VPLDVGIGVGDNWDQ 908 Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 110/302 (36%), Positives = 164/302 (54%), Gaps = 11/302 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L LVDGSS++YRAF+A+ R +G P AI NML LL K+ S AV+F Sbjct: 7 LILVDGSSYLYRAFFASQQADLRTSNGEPTGAIRVVTNMLRSLL----KQYPDSVVAVVF 62 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FRN++Y +YK++RP +P+ L Q+ + A G+P + I G EADD+I T Sbjct: 63 DAKGKSFRNDLYAEYKSHRPPMPDDLRSQIEPIHQIIGAMGLPLLVIDGVEADDVIGTLA 122 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A + I + DKD+ QLVS L DT+K++ D + VI K+G+PPE +V AL Sbjct: 123 RQATESQIDTLISTGDKDMAQLVSEHVTLMDTMKDQLTDRQGVIDKFGVPPELIVDYLAL 182 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEYAET 239 GDS DNIPG+ G+G KTA +LQ G+++ I + R+ + R E Sbjct: 183 MGDSSDNIPGMAGVGDKTAVAVLQGVGSIDTIAAHPERVAELSFRGAKTFAAKFKEQEAM 242 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 RLS++L ++TDV + + L L + L++ + EF L+ + + + DA + Sbjct: 243 VRLSQQLATIKTDVELPVSLAELRRHELQKDVLLALYRQFEFKNLVQELESASEADAEIV 302 Query: 300 EP 301 P Sbjct: 303 TP 304 >gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2] gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2] Length = 907 Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust. Identities = 240/615 (39%), Positives = 364/615 (59%), Gaps = 31/615 (5%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y KI+ + + W+ +L T +D ++ + ++ + + + + Sbjct: 310 YQKILTGEQLDAWLARLLAADLVCLDTETTGLDVMDARLVGMSFA-ITPHEAAYLPLAHR 368 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF- 486 + + D+T L+ L+ + E+E K+G N+KYDK + +GI++RG Sbjct: 369 YPGVPDQLDLDAT---------LARLRPWLESEQHKKLGQNLKYDKHIFANHGIALRGIS 419 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAI 543 +D +L SYVL+S +S HD+ S+A + L + + +E+ I D++ +A Sbjct: 420 DDTLLESYVLESHKS-HDMDSLALRHLGVKTISYEEVAGRGAKQICFDQVDLDIATRYAA 478 Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL L P++ + L HVY ++ P + V+ ME G+ +D +LL S E+ Sbjct: 479 EDADITLQLHQSLAPEITGKTGLQHVYRDIELPAMQVLFVMERNGVLLDANLLHVQSHEL 538 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 L++LE ++ + + FNL+SPKQ+ +ILF KLK P KT +G T + L+++ Sbjct: 539 GVKLIALEARAHEAAEQPFNLNSPKQIQEILFDKLKLPVKKKTPSGAPSTDEEVLQELAL 598 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE+R ++K+KSTY D LP +N+ T RVHT YS A +TGRLAS +PNLQN Sbjct: 599 -DYPLPKILLEYRGMAKLKSTYTDKLPKMVNRATGRVHTSYSQAVAVTGRLASSDPNLQN 657 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IPI++ G++IR AFI+P +++ADYSQIELRI+AH++ L Q F + D+HR A Sbjct: 658 IPIRSAEGRRIREAFIAPSGSCIVAADYSQIELRIMAHLSGDAGLLQAFAKNEDVHRATA 717 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AEIF V+ + RR+AK INF +IYG+S F LA QL I R A YI RYF R+PG+ Sbjct: 718 AEIFMTTPVDVTTEQRRYAKVINFGLIYGMSAFGLAKQLGIERGAAQAYIARYFARYPGV 777 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y++ T+ +Q GYVET+FGRR+ EINS + R ERAAINAP+QG+AAD+ + Sbjct: 778 RDYMDSTREQAKQQGYVETVFGRRLWLPEINSSNAMKRQGAERAAINAPMQGTAADLIKL 837 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI-----N 957 AMI V LE KL T++++Q+HDELV EVP++E+ S+ KA LP + N Sbjct: 838 AMIQVQGWLETEKLKTRLIMQVHDELVLEVPDDEL---------SLIKASLPGLMCHVAN 888 Query: 958 LRVPLKVNIKVSNNW 972 L VPL V + NW Sbjct: 889 LNVPLLVEVGSGKNW 903 Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 103/255 (40%), Positives = 149/255 (58%), Gaps = 11/255 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSSF+YRAF+A P + +H G P NAI G NML +L R++ A + +FD Sbjct: 6 LLLVDGSSFLYRAFHAIPEMRNQH-GEPTNAIYGVHNMLRRL----RQDFPADYSLCVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++YP YKANRP +P L+ Q+ + A G ++G EADD+I T Sbjct: 61 AKGKTFRDDLYPQYKANRPSMPADLVAQIEPLHQLIAASGWKIAMVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A ++G + + DKDL QLV L +T+ E +D+ V K+G+PPE +V AL Sbjct: 121 QASRDGVRCIVATGDKDLAQLVDEHVTLINTMNNETLDMAGVKAKFGVPPELIVDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEYAETARLSR 244 GD++DN+PG+ +G KTA L ++G+L+N++ NA I N LE+ A R Sbjct: 181 GDTVDNVPGVEKVGPKTAVKWLLQHGSLDNLMRNADTISGVVGANLRNALEWLPQA---R 237 Query: 245 KLVMLRTDVPITIPL 259 +LV ++ DVP +PL Sbjct: 238 QLVTVKCDVP-DLPL 251 >gi|298485205|ref|ZP_07003298.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160193|gb|EFI01221.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 921 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 226/539 (41%), Positives = 334/539 (61%), Gaps = 17/539 (3%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVL--------HRYGISMRGFE-DIMLMSYVLDSG 499 +L LK E+ K+G + K+ +L GI ++G D +L SYVLDS Sbjct: 385 VLKALKPLLEDPDKTKVGQHAKFAINLLANCALDGDQTQGIDLQGVRFDTILESYVLDST 444 Query: 500 RSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556 + HD S+ K+L++T +EI + D+I+ Q +A E +++ L+L + Sbjct: 445 ATRHDRDSLVAKYLTHTPINFQEIAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVF 504 Query: 557 RPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615 +L + L V ++ P++ V++ +E G +D +LL S E+ + +LE + Sbjct: 505 EARLAAIPTLQPVLNDIEMPLVPVLAGIERQGALVDANLLGIQSVELGDKMTALEREAFA 564 Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675 ++GE+FNL SPKQLG IL+ KL P +KT TGQ T L ++ D P+ K ++++R Sbjct: 565 IAGEEFNLGSPKQLGVILYEKLGMPILSKTATGQASTAEAVLAELAEQDFPLPKVLMQYR 624 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 +SK+KSTY D LP IN RT R+HT Y A +TGRL+S +PNLQNIPI+T G++IR+ Sbjct: 625 SMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQ 684 Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 AF++P KL++ADYSQIELRI+AH+A+ L F N LD+HR AAE+FGV +E V+ Sbjct: 685 AFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTT 744 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 MRR AK INF +IYG+S F LA Q+ + R ++ Y+ RYF R+PG+ +Y+E+T+ + Sbjct: 745 DMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAE 804 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 G+VETIFGRR++ +IN+ S+R ER AINAP+QG+AADI ++AM++V+ LE+ Sbjct: 805 QGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEESG 864 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L +++LQ+HDELV EV E+ + S+ I M A L VPL V + V NNW E Sbjct: 865 LDARVILQVHDELVLEVREDLVDQISEQIRPHMSGAA----ELAVPLLVEVGVGNNWDE 919 Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 105/287 (36%), Positives = 154/287 (53%), Gaps = 14/287 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P L+ GLP A+ G NML L R++ S FAV+FD Sbjct: 6 LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA + + Y LE + R K + E+ Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 A LS +L ++ DVP+ I L+ L + + +L+ LEF I Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWI 286 >gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] Length = 986 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 317/1025 (30%), Positives = 502/1025 (48%), Gaps = 107/1025 (10%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L LVDG S +R+FYA L+ K DG P + GF L LL N + S Sbjct: 10 LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGTPTSVTYGF---LKALLDNCKGLS-PQGI 64 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120 + FD TFR++ +YKANR P++ L L + +P G+EADD+ Sbjct: 65 VIAFDTAEPTFRHQADVNYKANRDVAPDIFFQDLKQLQEILENNLQLPLCLAPGYEADDV 124 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170 + T A ++G+ V I+S D+DL QLV LY ID V+ Sbjct: 125 LGTLANQASRDGWGVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKNSGPSLIDEAGVLS 184 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--K 228 K G+ P K+V L+ALTGDS DNIPG+ G+G KTA LL+E G+L+ I + ++ + K Sbjct: 185 KLGVAPSKVVELKALTGDSSDNIPGVKGVGPKTAITLLKENGDLDGIYNALAEVEAEGEK 244 Query: 229 RRENILEYAETARLSRK-----LVMLRTDVPITIPLE---HLILEDCNGPRLISFLKALE 280 ++ A ++LS L + ++ + IPL L L + L L ALE Sbjct: 245 ASRGAIKGALKSKLSNDRDNAYLSLHLAEILVDIPLPKAPRLELGSVDNDGLTDRLSALE 304 Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340 L+ +V + V ++ K E E R T SS + S Sbjct: 305 LNSLVRQVPS-----------FVATFSSGGFKANRHELEPSRSATSAAEPESSTETKASN 353 Query: 341 INSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL----ETIGSASFKIIT 396 N L L+ I N +++Q+ V++L + + + T Sbjct: 354 DNE--------LPALEP-----------QLITNPEELQELVKRLMGCRDRLKPVAIDTET 394 Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTK----EILSY 452 ++ F ++ + + + + D ++ I + H + + +L Sbjct: 395 TALNPFCAELVGLGVCWGEGLQDLAY------IPIGHHPPAALLDADAACQLPLEAVLKA 448 Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 + + + K N KYD+L+L R+G+++ G D +L Y+ D+ + H + +A++ Sbjct: 449 IAPWLASNDHPKALQNAKYDRLILLRHGLALEGVVMDTLLADYLRDAA-AKHGLEVMAER 507 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVY 569 T + ++ + + ++ +L + LR +L + +LL + Sbjct: 508 EFKITPTGFSELVGKGQTFADVAIPTASLYCGMDVHLTRRLAIRLRAQLENMGAQLLPLL 567 Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629 E++++P+ V++ ME TGI+ID LK++S E+ L LE+ + +G FNL+SPKQL Sbjct: 568 EQVEQPLEPVLALMEATGIRIDLPYLKELSIELGNTLEKLEQQAQEAAGVNFNLASPKQL 627 Query: 630 GDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 G++LF L +TKTG W T A LE++ D+P++ +LE R LSK++STY D+ Sbjct: 628 GELLFETLGLNRKKSRRTKTG-WSTDANVLEKLEA-DHPVVPLVLEHRVLSKLRSTYVDA 685 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747 LP + T RVHT ++ A T TGRL+S PNLQNIPI+T+ ++IR+AF+ KL+S Sbjct: 686 LPQLVESETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWKLLS 745 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIELRIL H++ L + F N D+H + A + ++ ++VS RR KTINF Sbjct: 746 ADYSQIELRILTHLSGEEVLQEAFRNGDDVHALTARLL--LDKDEVSEDERRLGKTINFG 803 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR- 866 +IYG+ R + + ++EA D++ RY R+ + ++E + GYVET+ GRR Sbjct: 804 VIYGMGAQRFSRSTGLSQAEAKDFLSRYKQRYAKVFTFLELQERLALSKGYVETLLGRRR 863 Query: 867 -IHYDEIN----------------SPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 H+D + + + RAA NAPIQGS+ADI + AM+ + + Sbjct: 864 PFHFDRNGLGRLLGKDPMDIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQLQQ 923 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 L L ++LLQ+HDELV EV + Q+++ +MEKA + L VPL V Sbjct: 924 QLTAADLPARLLLQVHDELVLEVDPTALEDVQQLVMQTMEKA----VELSVPLVVETGTG 979 Query: 970 NNWQE 974 +NW + Sbjct: 980 DNWMD 984 >gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Corynebacterium pseudotuberculosis I19] Length = 886 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 299/978 (30%), Positives = 486/978 (49%), Gaps = 110/978 (11%) Query: 5 NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 N L L+DG S +RAFYA P + G NA+ GF +ML LL E SH AV Sbjct: 6 NRLMLIDGHSMAFRAFYALPAENFSTSGGQATNAVYGFLSMLSSLL----NEEKPSHVAV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR +++PDYKA R P Q+ L++ + GI +E + +EADD+IAT Sbjct: 62 AFDVGRKTFRTDMFPDYKAQREATPPEFKGQVGLIKDVLEVLGITTLEKENYEADDVIAT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 A+ GF I++ D+D QLV+ TT + ++ + E V +K+G+ P + Sbjct: 122 LATAAQPLGFETLIVTGDRDSFQLVNATTTVLYPMRGVSVLHRFTPEAVEEKYGLTPAQY 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 AL GD DN+P IPG+G KTA + EYG+L+ +L A +K K ++ E E Sbjct: 182 PDFAALRGDPSDNLPNIPGVGPKTATKWIVEYGSLDELLERADEVKGKAGT-SLRERLEQ 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 R++R L T++I + Y D + Sbjct: 241 VRMNRTL-----------------------------------TEMIKDLELPYSPDQLGL 265 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLS 359 +PV + E G E++ T ++ S++ T+ +E+ + Sbjct: 266 KPVQV-AGVAEKFG-----ELEFGTNLRERVMSAVGADTTTALTEERAEV---------- 309 Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 V+ ++ W+ + + G A F T ++ +AIA D Sbjct: 310 -----------TVDQASLKDWLAQHKNQGLALFVRGRGTPATGDAEALAIA--------D 350 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 V I +DLS QD K + +L+ E +L H K +L Sbjct: 351 KQRHV--IAVDLSDIDPQDE-------KALAQWLRS--ETPKYL---HEAKATFHMLSGR 396 Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538 G + G D + +Y+L G+ ++D+ + Q+ L R+ + + + DS Sbjct: 397 GFELNGVAHDTAIAAYLLRPGQRTYDLKDVYQRHLQ--RQLSGDETQGQLSLLDAPDS-- 452 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 E I++ IL+L L +L +Y L+ P++ ++++ME GI +D + L++ Sbjct: 453 -EELIDSVIAILELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIAVDVETLEEQ 511 Query: 599 SAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 + + E +++G+ NLSSPKQL +LF L P KTKTG + T A+++ Sbjct: 512 LKVFIERVQEHEAAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTG-YSTAAKEI 570 Query: 658 EQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 E + +P + ++L R+ K+K+T + L + R+HT ++ TGRL+S Sbjct: 571 EALAVKHPDPFLDHLLAHRENQKLKTTL-EGLIKAVGS-DGRIHTTFNQTVASTGRLSST 628 Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 EPNLQNIP++T G++IR AF+ + L++ADYSQIE+R++AH+++ L + + Sbjct: 629 EPNLQNIPVRTQDGRRIRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGE 688 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+H V + +F V +++V+P++RR K +++ ++YG+S F L QL IP EA + Y Sbjct: 689 DLHNYVGSRVFEVPVDQVTPELRRRVKAMSYGLVYGLSAFGLGQQLNIPAGEAKQIMTSY 748 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F RF G+ +Y++ R++G+ T+FGRR + E+ S R ERAA+NAPIQG+ Sbjct: 749 FERFGGVKQYLDNVVEQARKDGFTSTLFGRRRYLPELGSDNRVARENAERAALNAPIQGT 808 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AMI V + L+ + +++LLQ+HDELV E+ E+ +I+ M+ A Sbjct: 809 AADIIKVAMIRVDQELKKAGVVSRVLLQVHDELVVEIAPNELEQVREIVEKEMDAA---- 864 Query: 956 INLRVPLKVNIKVSNNWQ 973 I+LRVPL+V+ NW+ Sbjct: 865 ISLRVPLEVSAGSGPNWE 882 >gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601] gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601] Length = 921 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 237/623 (38%), Positives = 364/623 (58%), Gaps = 38/623 (6%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425 +Y I+ + W+ ++ A+ T ++D ++ + I SF VE Sbjct: 324 AYDIILTWAQLDDWLARVRAAPLAAIDTETTSLDELRAEIVGI-----------SFSVEP 372 Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 +I L+ H D+ + L E+L+ LK + E+ K+G ++KYD+ V +GI + Sbjct: 373 GAAAYIPLA-HDGPDTPAQLPLA-EVLARLKPWLEDPKHPKLGQHVKYDRHVFANHGIEV 430 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 RG+ D ML SYVL+ H +AS+A++ T +++ IP ++ + Sbjct: 431 RGYVHDTMLQSYVLEV-HKPHGLASLAERHTGRTGISYEDLCGKGAKQIPFSQVPVDKAA 489 Query: 540 EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++ E+S+ L + +L P+L EKL +Y L+ + + ++E G+ ID D L Sbjct: 490 AYSCEDSDQTLDVHRVLWPQLEADEKLRGIYA-LEIACSETLFRIERNGVLIDADRLAAQ 548 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S + + +L LE+ YD++G+ FNL SPKQLG+I F KL P KT TG T + LE Sbjct: 549 SHALGQRILQLEQEAYDIAGQPFNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLE 608 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ D P+ +LE R LSK+K TY D L + RT RVHT Y+ A +TGRL+S +P Sbjct: 609 KL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQLADPRTGRVHTHYAQAVAVTGRLSSNDP 667 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+T G+++R AF++PP + + S DYSQIELRI+AHI+ L + F LD+H Sbjct: 668 NLQNIPIRTPEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGDEALLRAFHEGLDVH 727 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R AAE+FGV + +V+ + RR+AK INF +IYG+S + LA L I + A +YI RYF R Sbjct: 728 RATAAEVFGVALGQVTSEQRRYAKVINFGLIYGMSSYGLAKNLGIDNTAAKNYIDRYFQR 787 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ +Y++ TK + GYVET+FGRR++ EINSP R+ ERAAINAP+QG+AAD Sbjct: 788 YPGVWQYMQDTKAQAKARGYVETVFGRRLYLPEINSPNGPRRSAAERAAINAPMQGTAAD 847 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI-- 956 + ++AM+ V +L+ K M++Q+HDELVFE+PE ++ + +A +P+I Sbjct: 848 LIKKAMVQVQDALDAAKPEVLMIMQVHDELVFELPEGDV---------NWLRAEVPRIMA 898 Query: 957 ---NLRVPLKVNIKVSNNWQEEN 976 L+VPL + V +W + + Sbjct: 899 GVAELKVPLLAEVGVGPDWDKAH 921 Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 105/256 (41%), Positives = 149/256 (58%), Gaps = 2/256 (0%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRAF+A P L R G P +A G + +LQ +KE A + Sbjct: 1 MSDTKTLVLVDGSSYLYRAFHAMPDL-RAVPGDPTSAATGAIRGMINMLQALKKEVHADY 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A +FD TFR+ IYPDYKANR +PE L Q+ + + G P + I+G EADD+ Sbjct: 60 AACVFDASGPTFRDAIYPDYKANRAPMPEDLRAQIEPIHEVVRLLGWPVLAIEGVEADDV 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T A +G V I S DKDL QLV + DT+ ++ D+ V ++G+PP MV Sbjct: 120 IGTLARAAAGQGMRVVISSGDKDLSQLVDEHVTIIDTMNGKRRDVAGVTAEFGVPPALMV 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 QAL GD++DN+PG+P +G KTAA L EYG+L+ ++ +A IK EN+ + Sbjct: 180 DFQALVGDAVDNVPGVPKVGPKTAAKWLAEYGSLDALVAHAGAIKGVA-GENLRGALDWL 238 Query: 241 RLSRKLVMLRTDVPIT 256 +R+LV ++TD ++ Sbjct: 239 PTARELVTIKTDCDLS 254 >gi|311740514|ref|ZP_07714341.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium ATCC 33035] gi|311304034|gb|EFQ80110.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium ATCC 33035] Length = 882 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 298/975 (30%), Positives = 501/975 (51%), Gaps = 117/975 (12%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P+ + G NA+ GF +ML N+ E AV F Sbjct: 11 LLLIDGHSMAFRAFYALPVDNFSTSGGQHTNAVYGFLSML----SNTVAEETPDAIAVAF 66 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E++PDYKA R PE Q+ L+R + GI + + FEADDI+AT Sbjct: 67 DVGRKTFRTEMFPDYKAQREAAPEEFKGQVDLIREVLEVLGITTLSRENFEADDILATLA 126 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 E + + I++ D+D +QLV+ +T + +K + V +K+G+ P + Sbjct: 127 --TEAQDYETLIVTGDRDYLQLVNESTTVLYPMKGVSTLHRFTPSAVEEKYGLTPAQYPD 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIP +G KTA + +YG+L +++ +A IK N E E + Sbjct: 185 FAALRGDPSDNLPGIPKVGEKTATKWIVKYGDLASLVEHAEEIKGVVGN-NFRERIEQVQ 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 ++RKL + TD+ + + GP ++F +A + VA +D Sbjct: 244 MNRKLTQMITDMDLEV-----------GPNDLAFKEAK-----VADVAAKFD-------- 279 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 +++ T+++ +++ + ++ +EQ E++Q+L Sbjct: 280 -----------------DLEFGTSLRDRVLAAIPNDGAEA-AEQA------EQVQELE-- 313 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 +++ + + QW+ E + + + + A AI+ +DQ + Sbjct: 314 --------TVIDDEPLSQWLPGREHVA------VYVQGEGNPGQGDASAIAFVDQ-ERHG 358 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 +VE DLS + L + + S K+F H K +L GI Sbjct: 359 LQVE--LGDLSAEDDK------ALAQWLASDAPKYF---------HEAKAAFHMLAGRGI 401 Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540 + G D L +Y+L G+ ++ +A + Q+ L T L + + + + DS + Sbjct: 402 ELAGIAHDTALAAYLLRPGQRTYALADVYQRHLQKT----LGAATEQLSL--LDDSSL-- 453 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 ++ + IL+L L +L +Y L+ P++ ++++ME TGI +D D+L+ Sbjct: 454 --VDQAAAILELAERLSAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKD 511 Query: 601 EISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 + + E +L+G+ K NL+SPKQL +LF + P KTKTG + T A+++EQ Sbjct: 512 AFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTG-YSTAAKEIEQ 570 Query: 660 INCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 + + +P + ++L R+ K+K+T + L + R+HT ++ TGRL+S EP Sbjct: 571 LAAKNPHPFLDHLLAHREYQKMKTTL-EGLIKTVQP-DGRIHTTFNQTVASTGRLSSTEP 628 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 NLQNIP++T+ G++IR FI +L++ADYSQIE+R++AH++ L + ++ D+ Sbjct: 629 NLQNIPVRTEAGRQIRSVFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDL 688 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H V + +F V +++V+P++RR K +++ ++YG+S F L+ QL IP EA ++ YF Sbjct: 689 HNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKSIMESYFE 748 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 RF G+ +Y+++ R++GY T+FGRR + E+NS R ERAA+NAPIQG+AA Sbjct: 749 RFGGVKKYLDEVVVQARKDGYTATLFGRRRYLPELNSDNRLARENAERAALNAPIQGTAA 808 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AMI V ++L+ K +++LLQ+HDELV EV E +I+ M+ A I Sbjct: 809 DIIKVAMIRVDRALQGMK--SRVLLQVHDELVVEVAPGEADEVREILEREMDSA----IE 862 Query: 958 LRVPLKVNIKVSNNW 972 L VPL+V+ +W Sbjct: 863 LNVPLEVSAGAGKDW 877 >gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328] gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328] Length = 945 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 319/989 (32%), Positives = 521/989 (52%), Gaps = 79/989 (7%) Query: 17 YRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTF 72 +RA+YA R G+P + GF L +++ + E +A + FD TF Sbjct: 3 FRAYYAFGKSRSGGLRTSTGIPTSVCFGFLQSLLEVIDIYKPELVA----IAFDRAEPTF 58 Query: 73 RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG 132 R+E +YKA+R + P + + ++ +AF IP + G+EADD++ T G Sbjct: 59 RHEADANYKADRAETPADFIQDINNLQQLLEAFRIPIFSVAGYEADDVLGTLANRGSAAG 118 Query: 133 FAVTIISTDKDLMQLVSPT---TCLY----DTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 + V I+S D+DL QL+ T L+ ++ V +K I PE++V +AL Sbjct: 119 YQVKILSGDQDLFQLIDEQKQITVLHLSHGKGSSPQEFAAPQVYEKLSIKPEQVVDYKAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GD D IPG+ GIG KTA LL EYG+L++I + ++IK + + + E A S+ Sbjct: 179 CGDQSDCIPGVRGIGEKTAVKLLAEYGSLDSIYESVNQIKGAIANK-LKQGQELAYHSQN 237 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE---FTKLINRVATTYDCDAANIEPV 302 + + DVP+ I E L+ + +I L+ LE F I+++ + + V Sbjct: 238 MATIICDVPLDINWEDCQLQGFDSQEIIPLLQQLEFQVFIDKIHQLQSQFKG------LV 291 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYP 362 ++IN++ N ++ TE+ + + S ++ D ++E T L Sbjct: 292 DVEINSS-NSEVSYPTEL---DSSEDSSENNDDDDLWFFSAEDT----------ALETKA 337 Query: 363 INNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 I N + +I+ T + + V +L+T + + DT ++L+ +D Sbjct: 338 IANSIHPQIIQTPEALALLVNRLKTHTNPDKPVAWDT-----------ETTSLEPRDANL 386 Query: 422 FKVETIF----IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + + DL+ + G+ +E+L L+ E+E++ K N K+D+L+L Sbjct: 387 VGIGCCWGSELSDLAYIPLNHTQGEMLNIEEVLPALRPILESENYPKTLQNAKFDRLILR 446 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK-ISD 535 GI+++G D ML SYV++ SSH++ ++ ++L + +S +P K I+D Sbjct: 447 SQGITLKGVVFDTMLASYVINP-ESSHNLTDLSLRYLP-DLGIVAQSYSQLVPKGKTIAD 504 Query: 536 ---SQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQID 591 + V + + Q+ ++ L V L + ++++P+ +++ ME GI+ID Sbjct: 505 LDINTVANYCGLDVFTTFQITQKMQDILKDVPPLNDLLRQVEQPLEPILAGMEFQGIRID 564 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQ 649 D L Q+S ++ + L SLE+ + +GE FNL SPKQL ++LF +L+ KTKTG Sbjct: 565 TDYLNQLSKQLGETLESLEKASHQAAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTG- 623 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T A LE++ D+P+I ILE+R LSK+KSTY D+LP + T R+HT ++ A T Sbjct: 624 YSTDATVLEKLK-HDHPVINYILEYRTLSKLKSTYVDALPELVRSDTGRIHTDFNQAITS 682 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S PNLQNIPI+T+ ++IR+AFI L+SADYSQIELRILAH+++ L + Sbjct: 683 TGRLSSSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQIELRILAHLSQEKMLIE 742 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 + + D+H + A +F + ++++ RR K INF +IYG+ R A ++ + + Sbjct: 743 AYNTNQDVHSLTAQLLF--DKDEITADERRLGKIINFGVIYGMGSQRFAREVGVSATAGK 800 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE----R 885 +I R+ ++PG+ EY+E K GYVETI GRR +++ + N + R Sbjct: 801 QFIDRFNSQYPGVFEYLESQKLAAINQGYVETILGRRRYFESLKGRDRDRLNYQDEQMLR 860 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AA NAPIQGS+ADI + AMI + + L++++ ++LLQ+HDELVFEVP E I Sbjct: 861 AAANAPIQGSSADIIKIAMIKLAEILKNYQ--ARLLLQVHDELVFEVPLSEWEELQHQIK 918 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +ME CL L VPL V+I NW E Sbjct: 919 STMEN-CL---FLSVPLVVDIHAGTNWME 943 >gi|255324619|ref|ZP_05365736.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141] gi|255298525|gb|EET77825.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141] Length = 879 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 298/975 (30%), Positives = 504/975 (51%), Gaps = 117/975 (12%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P+ + G NA+ GF +ML ++ ++IA V F Sbjct: 8 LLLIDGHSMAFRAFYALPVDNFSTSGGQHTNAVYGFLSMLSNIVAEETPDAIA----VAF 63 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E++PDYKA R PE Q+ L+R + GI + + FEADDI+AT Sbjct: 64 DVGRKTFRTEMFPDYKAQREAAPEEFKGQVDLIREVLEVLGITTLSRENFEADDILATLA 123 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 E + + I++ D+D +QLV+ +T + +K + V +K+G+ P + Sbjct: 124 --TEAQDYETLIVTGDRDYLQLVNESTTVLYPMKGVSTLHRFTPSAVEEKYGLTPAQYPD 181 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIP +G KTA + +YG+L +++ +A IK N E E + Sbjct: 182 FAALRGDPSDNLPGIPKVGEKTATKWIVKYGDLASLVEHAEEIKGVVGN-NFRERIEQVQ 240 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 ++RKL + TD+ + + GP ++F +A + VA +D Sbjct: 241 MNRKLTQMITDMDLEV-----------GPNDLAFKEAK-----VADVAAKFD-------- 276 Query: 302 VVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 +++ T+++ +++ + ++ +EQ E++Q+L Sbjct: 277 -----------------DLEFGTSLRDRVLAAIPNDGAEA-AEQA------EQVQELE-- 310 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 +++ + + QW+ E + + + + A AI+ +DQ + Sbjct: 311 --------TVIDDEPLSQWLPGREHVA------VYVQGEGNPGQGDASAIAFVDQ-ERHG 355 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 +VE DLS + L + + S K+F H K +L GI Sbjct: 356 LQVE--LGDLSAEDDK------ALAQWLASDAPKYF---------HEAKAAFHMLAGRGI 398 Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540 + G D L +Y+L G+ ++ +A + Q+ L T L + + + + DS + Sbjct: 399 ELAGIAHDTALAAYLLRPGQRTYALADVYQRHLQKT----LGAATEQLSL--LDDSSL-- 450 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 ++ + IL+L L +L +Y L+ P++ ++++ME TGI +D D+L+ Sbjct: 451 --VDQAAAILELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKD 508 Query: 601 EISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 + + E +L+G+ K NL+SPKQL +LF + P KTKTG + T A+++EQ Sbjct: 509 AFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTG-YSTAAKEIEQ 567 Query: 660 INCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 + + +P + ++L R+ K+K+T + L + R+HT ++ TGRL+S EP Sbjct: 568 LAAKNPHPFLDHLLAHREYQKMKTTL-EGLIKTVQP-DGRIHTTFNQTVASTGRLSSTEP 625 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 NLQNIP++T+ G++IR AFI +L++ADYSQIE+R++AH++ L + ++ D+ Sbjct: 626 NLQNIPVRTEAGRQIRSAFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDL 685 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H V + +F V +++V+P++RR K +++ ++YG+S F L+ QL IP EA ++ YF Sbjct: 686 HNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKSIMESYFE 745 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 RF G+ +Y+++ R++GY T+FGRR + E+NS R ERAA+NAPIQG+AA Sbjct: 746 RFGGVKKYLDEVVVQARKDGYTATLFGRRRYLPELNSDNRLARENAERAALNAPIQGTAA 805 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AMI V ++L+ K +++LLQ+HDELV EV E +I+ M+ A I Sbjct: 806 DIIKVAMIRVDRALQGMK--SRVLLQVHDELVVEVAPGEADEVREILEREMDSA----IE 859 Query: 958 LRVPLKVNIKVSNNW 972 L VPL+V+ +W Sbjct: 860 LNVPLEVSAGAGKDW 874 >gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565] gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565] Length = 921 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 247/617 (40%), Positives = 361/617 (58%), Gaps = 29/617 (4%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I++ + W+++L+ +F T ++D ++ + + SF VE Sbjct: 322 YRCILDEAEFDGWLEQLKAAPLFAFDTETTSLDYMEARIVGV-----------SFAVEA- 369 Query: 428 FIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 V D G E +L LK E+ LK+G N+KYD+ VL + I ++G Sbjct: 370 GKAAYVPFGHDYLGAPVQLSEAVVLGKLKPLLEDPTCLKVGQNLKYDRNVLLNHDIDLQG 429 Query: 486 FE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541 D ML SYVL+S S HD+ S+A+++L + ++I + ++I Q + Sbjct: 430 IAYDTMLESYVLNSTASRHDMDSLAKRYLGVETTSFEDIAGKGVKQLTFNQIELEQAAPY 489 Query: 542 AIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 A E++++ L+L L +L V L V+ ++ P++ V+++ME+ G ID LL Q S Sbjct: 490 AAEDADITLRLHQTLWGQLEAVPGLAKVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQ 549 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 EI L LE+ ++L+G++FNLSSPKQLG+ILFTKL P KT G T + L ++ Sbjct: 550 EIELRLAELEKQAHELAGQEFNLSSPKQLGEILFTKLGLPIIKKTPKGAPSTAEEVLAEL 609 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 + + ++E R L+K+KSTY D LP I +T RVHT Y A TGRL+S +PNL Sbjct: 610 -AETYELPQLLMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSYHQAVAATGRLSSSDPNL 668 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIP++ + G++IR+AFI KL++ADYSQIELRI+AH++ L F DIH+ Sbjct: 669 QNIPVRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKGLLTAFAEGKDIHKA 728 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 AAE+FGV I+ V+ MRR AK INF +IYG+S F LA QL I R+EA Y+ YF R+P Sbjct: 729 TAAEVFGVAIDAVTTDMRRSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYP 788 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 G+ EY+E+T+ GYVET+FGRR++ +I S + +R ERAAINAP+QG+AADI Sbjct: 789 GVLEYMERTRQQAEAQGYVETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADII 848 Query: 901 RRAMISVH---KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 +RAMI+V + +ED + +ML+Q+HDELVFE+ EE++ II M A Sbjct: 849 KRAMINVDSWIRGIEDESI--RMLMQVHDELVFEIREEKLEEYIAIIKEKMSAAA----E 902 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPL V +NW + Sbjct: 903 LDVPLVVEAGTGDNWDQ 919 Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 106/260 (40%), Positives = 150/260 (57%), Gaps = 11/260 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M N L LVDGSS++YRAF+A+ R GLP A+ NM+ L RK+ Sbjct: 1 MAPSNPLILVDGSSYLYRAFFASQQADLRTSTGLPSGAVRVMANMMRSL----RKQYPDC 56 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD TFR++IYP+YKA R +P+ L Q+ + +A G P + ++G EADD Sbjct: 57 HVAVVFDAKGKTFRDDIYPEYKATRASMPDDLRSQVAPIHQMIKAMGFPFLMVEGVEADD 116 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +I T A ++ V I + DKD+ QLVS L DT+K+ K D E VI+K+G+PPE + Sbjct: 117 VIGTLARQATEKQLPVLISTGDKDMAQLVSDHVTLIDTMKDVKTDREGVIEKFGVPPELI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENI 233 + AL GD +DNIPG+ G+G KTA LLQ G++++I N ++ K + Sbjct: 177 IDYLALMGDKVDNIPGMTGVGEKTALALLQGIGSIDDIAANLDKVAALGFRGSKAFADKF 236 Query: 234 LEYAETARLSRKLVMLRTDV 253 E E RLS +L ++TDV Sbjct: 237 REQEEQVRLSYRLATIKTDV 256 >gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A] gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A] Length = 986 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 328/1041 (31%), Positives = 532/1041 (51%), Gaps = 130/1041 (12%) Query: 3 KENHLFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 K+ L LVDG S +R+FYA L+ K DG P + GF L LL N + SI Sbjct: 5 KKPTLLLVDGHSLAFRSFYAFSKGGEGGLTTK-DGFPTSVTYGF---LKSLLDNCK--SI 58 Query: 58 ASHFAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGF 115 I FD TFR++ P+YKANR P++ L L + ++ + + G+ Sbjct: 59 EPKGVTIAFDTAEPTFRHKEDPNYKANRDVAPDIFFQDLDQLEEILKESLNLSICKAPGY 118 Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDI 165 EADD++ T A ++G++V I+S D+DL QLV LY + + I+ Sbjct: 119 EADDVLGTLANDAAEKGWSVRILSGDRDLFQLVDDERDIAVLYMGGGPYAKSGSPKLINE 178 Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI-------- 217 + V +K G+ P K++ L+ALTGDS DNIPG+ G+G KTA LL E +L+ + Sbjct: 179 KGVREKLGVNPNKVIDLKALTGDSSDNIPGVKGVGPKTAINLLNENLDLDGVYKSLQELE 238 Query: 218 ----------LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267 + A R+K K ++N A LS+KL + +PI P + LE Sbjct: 239 KEGEKAKRGAIKGAVRLKLKADKDN-------AYLSKKLAEILIKIPID-PKVNYNLEGI 290 Query: 268 NGPRLISFLKALEFTKLINRVAT---TYDCDAANIEPVVLDINTTENKGIAIETEIDRDT 324 N +L L+ LE L +V+T + D + + D+N + E I D Sbjct: 291 NESKLAENLERLELHSLSKQVSTFKAIFSKDGLSKK----DLNPSSK-----EINIANDK 341 Query: 325 TIKTSQFSSLSDQTSKINSEQTP--QKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQ 382 T K S+ S+L++ +++ P + ++ L++L+ + + Q ++ Sbjct: 342 T-KNSELSTLNE------TKEIPKIEPKIIDNLEELNNF---------------VAQIMK 379 Query: 383 KLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGK 442 ++ + T +++ F ++ + + + D ++I + + K Sbjct: 380 HTDSTKPIAIDTETTSLNPFKAELVGLGFCFGESLKDI------VYIPIGHQNKEGDLIK 433 Query: 443 ----NTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496 N L +E++ L+ +F + K N KYD+L+L R+GI + G D +L Y+ Sbjct: 434 INQINQLKIEEVIFALQDWFSSNENHKTLQNAKYDRLILLRHGIILNGVVIDTLLADYIF 493 Query: 497 DSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553 D+ H + IA + + K +++K + +D S S + + + ++ Sbjct: 494 DA-TLKHSLDEIAYREFGFKPKSFSDVVKKGEDFSYVDIKSASMYCGMDVYLTRKLAIIY 552 Query: 554 LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613 + R K KL+++ + +++P+ V++++E TGI ID LK +S E++K L ++E+ + Sbjct: 553 IN-RLKETSTKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLSLELTKKLNTIEKEV 611 Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671 Y+++G +FNLSSPKQLG++LF KL KTKTG W T LE++ D+PI+K I Sbjct: 612 YNIAGSEFNLSSPKQLGELLFEKLDLDRKKSRKTKTG-WSTDVAVLEKLES-DHPIVKMI 669 Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731 +E R +SK+ +TY D+LP I K T RVHT ++ A T TGRL+S PNLQNIP++T+ + Sbjct: 670 IEHRTISKLLNTYVDALPKLIEKETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSR 729 Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791 +IR+AF+ KL+SADYSQIELRIL H++ L + + D+H + A +F + Sbjct: 730 RIRKAFLPQKDWKLLSADYSQIELRILTHLSGEEVLKNAYLKNEDVHSLTAKLLF--EKD 787 Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851 + RR KTINF +IYG+ R A + EA ++ ++ R+P + ++E + Sbjct: 788 AIDADERRIGKTINFGVIYGMGAQRFARSTGVSLIEAKYFLSKFKERYPAVFNFLEYQER 847 Query: 852 FVRQNGYVETIFGRRIHY------------------DEINSPKSSIRNINERAAINAPIQ 893 G+VET+ GRR ++ D + ++ + RAA NAPIQ Sbjct: 848 LALSQGFVETLLGRRRYFHFNKNGLGRLLGTPPNEIDLTTARRAGMEAQQLRAAANAPIQ 907 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 GS+ADI + AMI +H +L + LA K+LLQ+HDELV EV +++ ++ ++ME A Sbjct: 908 GSSADIIKLAMIQLHSALRETGLAAKILLQVHDELVLEVNPKDLEETKLLVKNTMENA-- 965 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 + L VPL V V NW E Sbjct: 966 --VKLSVPLIVETGVGVNWME 984 >gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] Length = 945 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 328/1021 (32%), Positives = 515/1021 (50%), Gaps = 130/1021 (12%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDG-------LPVNAIAGFCNMLWKLLQNSRKESIA 58 HL L+DG S +RA+YA S+ DG +P + GF L ++L+ + + Sbjct: 5 HLLLIDGHSLAFRAYYA---FSKGRDGGLRTSTGIPTSVCFGFLKSLLEILEQQQSD--- 58 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 H A+ FD TFR+ +YKA R + P+ + + ++ +A +P + G+EAD Sbjct: 59 -HVAIAFDLGEPTFRHAADENYKAGRAETPQDFITDIANLQALLRALRLPLLSQPGYEAD 117 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLV---SPTTCLY--DTVKEEKIDIE-----HV 168 D+I T + +G+ V+I+S D+DL QL+ LY T+ + K +E V Sbjct: 118 DVIGTVAHCWRSQGWPVSIVSGDRDLFQLIDREGQVQVLYLGSTLGQRKQGLEAFDALKV 177 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 + G+ PE++V +AL GD+ D IPGI GIG KTA LL +Y LE+I + I+ Sbjct: 178 KETMGVWPEQIVDYKALCGDASDRIPGIKGIGPKTAVQLLSQYPTLEDIYAHIHEIRPPS 237 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 R ++ AR SR L + DVP+ +PLE L L + P L L LEF L ++ Sbjct: 238 LRTKLINGEADARHSRTLAQIVHDVPLELPLEELHLSPFDWPTLDHLLDQLEFRALRLQL 297 Query: 289 ATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE--QT 346 + GI + E D + T F + +D +N + +T Sbjct: 298 QDWH----------------LRLGGILPDLETDSEET----WFFAPTDTPPPLNVQLIET 337 Query: 347 PQKL--FLERLQKL--SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402 P++L + +L+ + +P+ D+ T +N +D L +G + Sbjct: 338 PEQLQWLMSQLETCTDANHPVAWDTETTALNPRDA-----ALVGLGCC-----------W 381 Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462 + P +A L K+ G+N +E L+ L+ E + + Sbjct: 382 GAAPDQVAYLPLGHKE----------------------GQNLPLEETLAALRPILEGDRY 419 Query: 463 LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521 K+ N K+D+LVL GI +RG D ML SYV++ +SH++ + Q++L + Sbjct: 420 PKVLQNAKFDRLVLRFQGIQLRGVVFDTMLASYVINP-EASHNLKDLCQRYLPLQAQSYR 478 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL---IVEKLLHVYERLDKPMID 578 + +S + V ++ + + LL+ KL + +L + ++ P+ Sbjct: 479 TLVGKDQTLADLSPATVAQYC----GLDVHTTYLLKEKLEADLTPRLRQLLLEVELPLEP 534 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 ++++ME TGI+ID D L+Q+S E+ + L +L++ +D G+ FNL+SPKQL ++LF L Sbjct: 535 ILAEMEATGIRIDSDYLRQLSQELEQQLAALQQQAWDAVGQPFNLASPKQLSELLFGTLG 594 Query: 639 FPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 + KTK G + T A LE++ GD+P+I IL R L+K+KSTY D LP + T Sbjct: 595 LDTKKTHKTKLG-YSTDAATLEKLR-GDHPVIDLILSHRTLAKLKSTYVDVLPTLVRPDT 652 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 RVHT ++ A T TGRL+S PNLQNIPI+T+ ++IRRAFI L++ADYSQIELR Sbjct: 653 GRVHTEFNQAVTATGRLSSSSPNLQNIPIRTEFSRQIRRAFIPEAGWLLVAADYSQIELR 712 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 ILAH+++ L ++ D+HR+ A F + +S RR K INF +IYG+ P R Sbjct: 713 ILAHLSQEPALLAAYQEGADVHRLTAQ--FLLEKTDISSSERRLGKMINFGVIYGMGPQR 770 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY------- 869 A + + +EA +I+R+++R+P + +Y+ + + GYVETI GRR ++ Sbjct: 771 FAREAGVSVAEAKVFIQRFYNRYPRVFDYLRQMERLALSQGYVETILGRRRYFAFESREL 830 Query: 870 -----------DEINSPKSSIRNINE---RAAINAPIQGSAADITRRAMISVHKSLEDHK 915 +++ K + N RAA NAPIQGS+ADI + AM+ + L K Sbjct: 831 QSLRGKPLDVLADVDPSKLKMSNYERGLLRAAANAPIQGSSADIIKCAMVKLAPLLPPEK 890 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975 ++LLQ+HDELV E+ E I M A + L VPL V+I + NW E Sbjct: 891 --ARLLLQVHDELVLEMTPEAWEHLQTTIPEVMSTA----VPLSVPLAVDIYAAANWLEA 944 Query: 976 N 976 N Sbjct: 945 N 945 >gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231] gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002] Length = 886 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 299/979 (30%), Positives = 488/979 (49%), Gaps = 112/979 (11%) Query: 5 NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 N L L+DG S +RAFYA P + G NA+ GF +ML LL E SH AV Sbjct: 6 NRLMLIDGHSMAFRAFYALPAENFSTSGGQATNAVYGFLSMLSSLL----NEEKPSHVAV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR +++PDYKA R P Q+ L++ + GI +E + +EADD+IAT Sbjct: 62 AFDVGRKTFRTDMFPDYKAQREATPPEFKGQVGLIKDVLEVLGITTLEKENYEADDVIAT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 A+ GF I++ D+D QLV+ TT + ++ + E V +K+G+ P + Sbjct: 122 LATAAQPLGFETLIVTGDRDSFQLVNATTTVLYPMRGVSVLHRFTPEAVEEKYGLTPAQY 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 AL GD DN+P IPG+G KTA + EYG+L+ +L A +K K ++ E E Sbjct: 182 PDFAALRGDPSDNLPNIPGVGPKTATKWIVEYGSLDELLERADEVKGKAGT-SLRERLEQ 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 R++R L T++I + Y D + Sbjct: 241 VRMNRTL-----------------------------------TEMIKDLELPYSPDQLGL 265 Query: 300 EPVVLDINTTENKGIAIE-TEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 +PV + G+A + E++ T ++ S++ T+ +E+ + Sbjct: 266 KPVQV-------AGVAEKFDELEFGTNLRERVMSAVGADTTTALTEERAEV--------- 309 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 V+ ++ W+ + + G A F T ++ +AIA Sbjct: 310 ------------TVDQASLKDWLAQHKNQGLALFVRGRGTPATGDAEALAIA-------- 349 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 D V I +DLS QD K + +L+ E +L H K +L Sbjct: 350 DKQRHV--IAVDLSDIDPQDE-------KALAQWLRS--ETPKYL---HEAKATFHMLSG 395 Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 G + G D + +Y+L G+ ++D+ + Q+ L R+ + + + DS Sbjct: 396 RGFELNGVAHDTAIAAYLLRPGQRTYDLKDVYQRHLQ--RQLSGDETQGQLSLLDAPDS- 452 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E I++ IL+L L +L +Y L+ P++ ++++ME GI +D + L++ Sbjct: 453 --EELIDSVIAILELAQELTKQLEDIDSFELYRDLELPLVLILARMEAAGIAVDVETLEE 510 Query: 598 VSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 + + E +++G+ NLSSPKQL +LF L P KTKTG + T A++ Sbjct: 511 QLKVFIERVQEHEAAARNIAGDPSLNLSSPKQLQVVLFETLGLPKTKKTKTG-YSTAAKE 569 Query: 657 LEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 +E + +P + ++L R+ K+K+T + L + R+HT ++ TGRL+S Sbjct: 570 IEALAVKHPDPFLDHLLAHRENQKLKTTL-EGLIKAVGS-DGRIHTTFNQTVASTGRLSS 627 Query: 716 LEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 EPNLQNIP++T G++IR AF+ + L++ADYSQIE+R++AH+++ L + + Sbjct: 628 TEPNLQNIPVRTQDGRRIRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQG 687 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 D+H V + +F V +++V+P++RR K +++ ++YG+S F L QL IP EA + Sbjct: 688 EDLHNYVGSRVFEVPVDQVTPELRRRVKAMSYGLVYGLSAFGLGQQLNIPAGEAKQIMTS 747 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF RF G+ +Y++ R++G+ T+FGRR + E+ S R ERAA+NAPIQG Sbjct: 748 YFERFGGVKQYLDNVVEQARKDGFTSTLFGRRRYLPELGSDNRVARENAERAALNAPIQG 807 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AADI + AMI V + L+ + +++LLQ+HDELV E+ E+ +I+ M+ A Sbjct: 808 TAADIIKVAMIRVDQELKKAGVVSRVLLQVHDELVVEIAPNELEQVREIVEKEMDAA--- 864 Query: 955 KINLRVPLKVNIKVSNNWQ 973 I+LRVPL+V+ NW+ Sbjct: 865 -ISLRVPLEVSAGSGPNWE 882 >gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC] gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC] Length = 921 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 237/623 (38%), Positives = 363/623 (58%), Gaps = 38/623 (6%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE- 425 +Y I+ + W+ ++ A+ T ++D ++ + I SF VE Sbjct: 324 AYDIILTWAQLDDWLARVRAAPLAAIDTETTSLDELRAEIVGI-----------SFSVEP 372 Query: 426 --TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 +I L+ H D+ + L E+L+ LK + E+ K+G ++KYD+ V +GI + Sbjct: 373 GAAAYIPLA-HDGPDTPAQLPLA-EVLARLKPWLEDPKHPKLGQHVKYDRHVFANHGIEV 430 Query: 484 RGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 RG+ D ML SYVL+ H +AS+A++ T +++ IP ++ + Sbjct: 431 RGYVHDTMLQSYVLEV-HKPHGLASLAERHTGRTGISYEDLCGKGAKQIPFSQVPVDKAA 489 Query: 540 EHAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++ E+S+ L + +L P+L EKL +Y L+ + + ++E G+ ID D L Sbjct: 490 AYSCEDSDQTLDVHRVLWPQLEADEKLRGIYA-LEIACSETLFRIERNGVLIDADRLAAQ 548 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S + + +L LE+ YD++G+ FNL SPKQLG+I F KL P KT TG T + LE Sbjct: 549 SHALGQRILQLEQEAYDIAGQPFNLGSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLE 608 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ D P+ +LE R LSK+K TY D L + RT RVHT Y+ A +TGRL+S +P Sbjct: 609 KL-AEDYPLPAKLLEHRSLSKLKGTYTDKLAQLADPRTGRVHTHYAQAVAVTGRLSSNDP 667 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+T G+++R AF++PP + + S DYSQIELRI+AHI+ L + F LD+H Sbjct: 668 NLQNIPIRTPEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGDEALLRAFHEGLDVH 727 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R AAE+FGV + +V+ + RR+AK INF +IYG+S + LA L I + A +YI RYF R Sbjct: 728 RATAAEVFGVALGQVTSEQRRYAKVINFGLIYGMSSYGLAKNLGIDNTAAKNYIDRYFQR 787 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ +Y++ TK + GYVET+FGRR++ EINSP R+ ERAAINAP+QG+AAD Sbjct: 788 YPGVWQYMQDTKAQAKARGYVETVFGRRLYLPEINSPNGPRRSAAERAAINAPMQGTAAD 847 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI-- 956 + ++AM+ V +L+ K M++Q+HDELVFE+PE ++ +A +P+I Sbjct: 848 LIKKAMVQVQDALDAAKPEVLMIMQVHDELVFELPEGDV---------DWLRAEVPRIMA 898 Query: 957 ---NLRVPLKVNIKVSNNWQEEN 976 L+VPL + V +W + + Sbjct: 899 GVAELKVPLLAEVGVGPDWDKAH 921 Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 104/250 (41%), Positives = 149/250 (59%), Gaps = 2/250 (0%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R G P +A G + +LQ +KE A + A +FD Sbjct: 7 LVLVDGSSYLYRAFHAMPDL-RAVPGDPTSAATGAIRGMINMLQALKKEVHADYAACVFD 65 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ IYPDYKANR +PE L Q+ + + G P + I+G EADD+I T Sbjct: 66 ASGPTFRDAIYPDYKANRAPMPEDLRAQIEPIHEVVRLLGWPVLAIKGVEADDVIGTLAR 125 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A +G V I S DKDL QLV + DT+ ++ D+ V+ ++G+PP MV QAL Sbjct: 126 AAAGQGMRVVISSGDKDLSQLVDEHVTIIDTMNGKRRDVAGVMAEFGVPPALMVDFQALV 185 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+P +G KTAA L EYG+L+ ++ +A IK EN+ + +R+L Sbjct: 186 GDAVDNVPGVPKVGPKTAAKWLAEYGSLDALVAHAGAIKGVA-GENLRGALDWLPTAREL 244 Query: 247 VMLRTDVPIT 256 V ++TD ++ Sbjct: 245 VTIKTDCDLS 254 >gi|119025698|ref|YP_909543.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703] gi|118765282|dbj|BAF39461.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703] Length = 948 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 291/998 (29%), Positives = 487/998 (48%), Gaps = 100/998 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P+ + G NA+ GF ML +++ + H AV F Sbjct: 16 LLVVDGHSLAFRAFFALPVENFSTSSGQATNAVWGFATMLSQVIDAEHPD----HLAVAF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRN++ P YK R PE LL QLPL++ A G+ IE G+E DD+I T Sbjct: 72 DVKGGTFRNQMLPQYKGTRDAAPEELLSQLPLIQQMLTALGVTYIEKPGYEGDDVIGTLA 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + ++ G+ ++S D+D QL++ T LY D++H V +K+ + P + Sbjct: 132 SMGDQAGYRTLVLSGDRDAFQLINDDITVLYP--GHHFKDLKHMTPDAVQEKYHVSPAQY 189 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236 L AL G++ DNIPG+PG+G AA + +YG LE I+ +A I KK RENI Sbjct: 190 PDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLEQIIEHADEISGKKGEALRENI--- 246 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCD 295 E +L+R + L D+ + + + L + +L LEF + NRV T++ D Sbjct: 247 -EQVKLNRSVNALVRDLDLGVSVSDLTFGQVDAGQLDDLFTKLEFGVRTKNRVLKTFNAD 305 Query: 296 --------AANIE-PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQT 346 ++ +E P V D+N +ET + + +++S Sbjct: 306 KPSGDVHESSKLELPHVEDVNDPH----VVETWVQNHFPVVQEHLHERHERSSN------ 355 Query: 347 PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKP 406 + ++ DS T+ + K Q W E ++ M A H + Sbjct: 356 ----------DIPEFGFEIDSSTRCTD-KVKQSWTLYAEGTSKPGEASLSALMIAVHGEA 404 Query: 407 IAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIG 466 I I + + +++ L++ F+ H + Sbjct: 405 IRI---------------------------------DVFSPDMVQCLQRLFDRYHHSMVV 431 Query: 467 HNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-YTRKEILKSR 524 H K +L G+ + D L Y+ + + +A +L + + + Sbjct: 432 HGYKEHAHLLGSIGVELPEPLFDTKLAGYLAHPDFHADTLEQVAAHFLDLHIEAQAEAAT 491 Query: 525 KSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + ++ D+ +DS+ E + + ++ L L L + + + ++ P+ V+ Sbjct: 492 QGTLDFDEPEENDSKNDELILTRTAIVGLLAEYLAGVLDKREQFGLLKSIELPVSQVLHG 551 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME G Q+D L Q+ +++ + +E + +GE+ NL SPKQL ILF + Sbjct: 552 MEQVGAQVDMARLVQMRDQLAADAAQAQETAWQFAGEQVNLQSPKQLQKILFEDMGLKPT 611 Query: 643 AKTKTGQWKTTAQDLEQIN--CGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKRT 696 KTK+G + T A L+ + DN + +L R+ +K+K +L + N+ Sbjct: 612 KKTKSGSYTTNAAALQTLRDRSYDNDRACQFLDALLMHREKNKLKQI-VQTLIDATNRHD 670 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIEL 755 R+HT + TGRL+S++PNLQNIP + G++IR AF+ + L+S+DYSQ+EL Sbjct: 671 GRIHTTFEQTVAATGRLSSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVEL 730 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+A ++ L + F + D H+ VA+ ++G+ ++ ++ R H K +++ + YG+S + Sbjct: 731 RIMADLSGDEALIEAFRSGKDFHKYVASLVYGIPVDDITSDQRSHVKAMSYGLAYGLSTY 790 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA QL+I EA +YF F +HEY+E + R+ GY ETIFGRR ++ + SP Sbjct: 791 GLAQQLKIKPKEAESLKNQYFATFGKVHEYLESLVSSAREKGYTETIFGRRRYFPGLKSP 850 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 ++R+ ERAA+NAPIQGSAADI + AMI + +L++ L ++++LQIHDELV E+ Sbjct: 851 NRAVRDAAERAALNAPIQGSAADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPG 910 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E A+ ++ +ME A + + VPL V+ + ++WQ Sbjct: 911 EEKQATALVKDAMEHA----VTMAVPLDVSTGIGSDWQ 944 >gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu] Length = 917 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 247/612 (40%), Positives = 359/612 (58%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I W K++ +F T ++D ++ + ++ S K Sbjct: 320 YDTIQTWAQFDAWFAKIDAAALTAFDTETTSLDPMTARLVGLSFSVEPGK--------AA 371 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ ++ H D + L E+L+ LK + E+ K+G ++KYD VL YGI + G E Sbjct: 372 YLPVA-HRGPDLPEQLPL-DEVLARLKPWLESADRKKVGQHLKYDAQVLANYGIELSGIE 429 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R+ HD+ S+A + L +++ I D+++ +Q E+A Sbjct: 430 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAA 488 Query: 544 ENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID L+ S EI Sbjct: 489 EDADITLQLHHALYPQVAREPGLERVYREIEMPVSIVLRKMERTGVLIDDARLQAQSTEI 548 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y+L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 549 ATRLVELEAQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPETGRVHTNYAQAVAVTGRLASNDPNLQN 667 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+ P +++SADYSQIELRI+AHI+ L + F N DIHR A Sbjct: 668 IPVRTAEGRRIREAFIASPGHQIVSADYSQIELRIMAHISGDASLLRAFSNGEDIHRATA 727 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 728 AEVFGVTPLEVTADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGV 787 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y+E T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 788 AQYMEDTRAIAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V L LA++M++Q+HDELV EVPE E+ + + M L+VPL Sbjct: 848 SMIAVDDWLTRDGLASRMIMQVHDELVLEVPEAELPRVREKLPEMMCGVA----KLKVPL 903 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 904 VAEVGAGANWEE 915 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 102/256 (39%), Positives = 151/256 (58%), Gaps = 6/256 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKANRP +P L Q+ + A +A G P + ++G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + VI K+G+PPE+++ AL Sbjct: 127 EAERHGMKVVVSTGDKDLAQLVTDRVTLVNTMTNEILDRDGVIAKFGVPPERIIDYLALI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y +L+ ++ +A IK +N+ + L RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYDSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRKL 245 Query: 247 VMLRTDVPITIPLEHL 262 V + T + LE + Sbjct: 246 VTVETACDLAPHLESI 261 >gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno] gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno] Length = 928 Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust. Identities = 235/542 (43%), Positives = 341/542 (62%), Gaps = 23/542 (4%) Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGR 500 K TK ++ + FFENE K+G N+KYD VL YG+ ++G D M+ Y+L+ Sbjct: 395 KEAATK-LIEQFRPFFENEQIAKVGQNLKYDLKVLQNYGVEVQGALFDTMIAHYLLNPDM 453 Query: 501 SSHDIASIAQKWLSYTRKEI------LKSRKS--SIPIDKISDSQVQEHAIENSNVILQL 552 H++ +++ +L+YT I K+++S ++PID +V+E+A+E+++V QL Sbjct: 454 R-HNMDILSETYLNYTPIAIESLIGKGKAQRSMRTVPID-----EVKEYAVEDADVTWQL 507 Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612 + + ++ +Y L+ P+I V++ ME G+ +D D LK+ S + ++ LE Sbjct: 508 KNVFQSQMPQVNAQKIYTDLEAPLIKVLAAMEREGVNLDVDFLKEYSKTLDADIAQLETA 567 Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNI 671 I +GE FNL+SPKQLGDILF KLK S K TKTGQ+ T+ + L + I+ +I Sbjct: 568 IAQQAGETFNLASPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPF-AAKHKIVADI 626 Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731 LEWRQ+ K+KSTY D+LP +NK T RVHT Y TGRL+S PNLQNIPI+T GQ Sbjct: 627 LEWRQVQKLKSTYVDALPLEVNKSTGRVHTTYMQTVAATGRLSSNNPNLQNIPIRTPRGQ 686 Query: 732 KIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790 ++R+AFI+ P L+SADYSQIELRI+A +++ + + F + DIHR AA++F V + Sbjct: 687 QVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIESFLHGEDIHRATAAKVFNVPL 746 Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850 E+V+ + R HAKT+NF IIYG+S F L+ Q + RSE+ + I Y+ +P + YI + Sbjct: 747 EEVTREQRSHAKTVNFGIIYGVSAFGLSAQTDLSRSESKELIDTYYATYPNLRNYINRQI 806 Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910 F R++GYVETI GRR + +I+S +R ER A+NAPIQGSAADI + AMI +H Sbjct: 807 EFAREHGYVETILGRRRYLPDIHSHNQVVRGGAERNAVNAPIQGSAADIIKIAMIRIHNQ 866 Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970 L+ KL T+MLLQ+HDELVF+VP+ E+ +I +ME A L VPL ++ V N Sbjct: 867 LQAQKLQTRMLLQVHDELVFDVPKTELELVKPLIKDAMENA----FTLAVPLVADLGVGN 922 Query: 971 NW 972 NW Sbjct: 923 NW 924 Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 162/303 (53%), Gaps = 25/303 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + I+R +YA P ++ K GL +AI GF N L+++++ + + H AV Sbjct: 5 LFLLDAYALIFRGYYAFIKNPRINSK--GLNTSAILGFMNSLFEVIKKEKPD----HLAV 58 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD R E++ DYKANR + PE + +P + +A IP IE +G+EADDII T Sbjct: 59 AFDKGGSVARTELFADYKANREETPEAIRLAIPYIHEILKALHIPIIEKEGYEADDIIGT 118 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIP-------- 175 + AE + + V +++ DKD QLVS +Y + DIE WG+ Sbjct: 119 LSKQAEAQDYQVYMVTPDKDYAQLVSDNIFMYRPARSGN-DIE----IWGVKEVQEKFEV 173 Query: 176 --PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + GD++DNIPG+PG+G KTA LL ++G++EN+L N ++K K RENI Sbjct: 174 QNPLQVIDFLGMMGDAVDNIPGLPGVGEKTAKKLLADFGSMENLLANTDKLK-GKLRENI 232 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E LS++L + DVP+T + + + LEF +L+ TY Sbjct: 233 ENNKEKGILSKQLATIMLDVPVTFDEADFAMSQPDFEAVGKIFDELEFRQLLQNFLKTYQ 292 Query: 294 CDA 296 +A Sbjct: 293 PEA 295 >gi|148272937|ref|YP_001222498.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830867|emb|CAN01811.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 894 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 293/981 (29%), Positives = 485/981 (49%), Gaps = 115/981 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P S + +G NA+ GF ML LLQ + +H V F Sbjct: 9 LLVIDGHSLAFRAFYALPAESFQNREGQHTNAVHGFIAMLINLLQKEKP----THVGVAF 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR YP+YK R + P Q+PL+ A + IP + + EADDI+AT Sbjct: 65 DISRFSFRTREYPEYKGTRGETPVEFTGQVPLLERALKTMNIPTLTKEDHEADDILATLA 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 ++GF V ++S D+D +QLV+ T LY + + + D E V +K+G+ PE Sbjct: 125 TQGREQGFRVLVVSGDRDAIQLVNDDVTLLYPSTQGVSQLTRYDAEKVFEKYGVQPEMYP 184 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + AL G++ DN+ G+ +G KTA L +YG+L+ +L + I K +N+ E Sbjct: 185 DIAALVGETSDNLIGVDKVGPKTAVKWLNQYGSLDAVLEHRDEISGKVG-DNLRAQYENV 243 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +R+L L TDV + + + L + + P L + LEF +L++RV Sbjct: 244 IRNRRLNRLLTDVELPLGPKDLERKPIDEPALREVFQVLEFKQLLDRVLKL--------- 294 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 E G + +E + ++ + S + PQ+L E L K Sbjct: 295 ---------EGSGASASSE--------GTPVGAVEQEPSTAPAAPRPQQLLDEELAK--- 334 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 W+++ G+AS + T++ +P+ +++ Sbjct: 335 -------------------WIERQ---GAASPHGLGLTVETQDGRPVGFGLAS------- 365 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 E + + + + + L + KI + K + R G Sbjct: 366 --ATEAVTLPWQEGRADYAPFERWLASDAP-------------KIMSDAKLQVKAMRRAG 410 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE------ILKSRKSSIPIDKI 533 + ++G D+++ ++L G + +A++ ++L E + ++ + P++ Sbjct: 411 LEVQGLAFDVLVAGWLLRPGFTDKTLAALVSRYLMEDLPEPDANQLVPETEALTAPVEAW 470 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 +V EHA+ +++ E+ L V ++ P + V+ +ME+ G+ D+ Sbjct: 471 YTLRV-EHALR--------------EVLDERTLGVMVDIEMPTLLVLVEMELRGVATDRA 515 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L ++SA++ + + L + + G++ NL SPKQL ++LF +L P KTG + T Sbjct: 516 GLAELSAQLQERITDLAQRAFAEIGKEINLGSPKQLQEVLFDQLGMPKTRANKTG-FSTD 574 Query: 654 AQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A L + + +P + +LE R SK++ +L I +R+HT Y T TGR Sbjct: 575 AGALADLQASNPHPFLDLLLEHRDASKLRQII-QTLERGIGD-DERIHTTYVQTGTTTGR 632 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 ++S +PNLQNIP++T+ G++IR A + + L++ADYSQIE+RI+AH++ L + F Sbjct: 633 ISSNDPNLQNIPVRTEEGRRIRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAF 692 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 D+HR V + IFGV VS +MR K +++ + YG+S F L+ QLRIP SEA Sbjct: 693 AAGEDLHRFVGSRIFGVEPADVSAEMRTKVKAMSYGLAYGLSAFGLSKQLRIPSSEAKQL 752 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF RF + +Y+ + R GY ETIFGRR + ++NSP +R+ ERAA+NAP Sbjct: 753 MTDYFARFGAVRDYLRQVVEEARAAGYTETIFGRRRPFPDLNSPNRVLRDNAERAALNAP 812 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGSAADI + AMI + + + +A++MLLQ+HDEL+ EV E I+ M A Sbjct: 813 IQGSAADIMKIAMIRIEADMRERDMASRMLLQVHDELILEVAAGEWDALEAIVTDRMAHA 872 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 +LRVPL+V + ++W Sbjct: 873 A----DLRVPLEVQVGRGDSW 889 >gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49] Length = 641 Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust. Identities = 246/612 (40%), Positives = 363/612 (59%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I W+ K++ +F T ++D ++ + ++ ST K Sbjct: 44 YDTIQTWAQFDAWLAKIDAAELTAFDTETTSLDPMVAQLVGLSFSTEPGK--------AA 95 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ ++ H D + L ++L+ LK + E+ K+G ++KYD VL YGI + G E Sbjct: 96 YLPVA-HRGPDLPEQLPL-DDVLARLKPWLESAERKKVGQHLKYDAQVLANYGIELNGIE 153 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R+ HD+ S+A + L +++ I D+++ +Q E+A Sbjct: 154 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAA 212 Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID L+ S EI Sbjct: 213 EDADITLQLHHALYPQVAREPGLQRVYREIEMPVSLVLRKMERTGVLIDDARLQAQSTEI 272 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y+L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 273 ATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 331 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 332 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRLASNDPNLQN 391 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+ P +++SADYSQIELRI+AHI+ L + F DIHR A Sbjct: 392 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATA 451 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 452 AEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGV 511 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y+E T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 512 AQYMEDTRTVAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 571 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V L KLA++M++Q+HDELV EVP++E++ + + M L+VPL Sbjct: 572 SMIAVDGWLTRDKLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA----KLKVPL 627 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 628 VAEVGAGANWEE 639 >gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306] gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306] Length = 864 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 303/967 (31%), Positives = 491/967 (50%), Gaps = 121/967 (12%) Query: 17 YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75 +RAFYA P+ G NA+ GF +M+ L+ + +SIA V FD TFR E Sbjct: 3 FRAFYALPVDKFSTSGGQHTNAVYGFMSMMAALVGEEKPDSIA----VAFDVGRKTFRTE 58 Query: 76 IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY-TYIAEKEGFA 134 ++P+YKA R PE Q+ ++R GI + + FEADDI+AT T + + F Sbjct: 59 MFPEYKAQRESAPEEFKGQVTIIRDVLDKMGITTLSRENFEADDILATLATQATQMDEFD 118 Query: 135 VTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSI 190 I++ D+D +QLV+ TT LY K + E V +K+G+ P++ AL GD+ Sbjct: 119 TLIVTGDRDYLQLVNDSTTVLYPMQGVSKLHRFTPEAVEEKYGLTPQQYPDYAALRGDTS 178 Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLR 250 DN+PG+P +G KTA + +Y +L+N+L +A IK N+ E E RL+R L + Sbjct: 179 DNLPGVPKVGEKTALKWILQYEDLDNLLNHAEDIKGVVGN-NLRERIEQVRLNRTLTQMI 237 Query: 251 TDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAANIEPVVLDINTT 309 TD+ + + + L + + LEF L RV + NIE Sbjct: 238 TDMDLEVGPQDLAFKSAETATIAQLFDELEFGVNLRERVVDAF----PNIE--------- 284 Query: 310 ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYT 369 G ETE +K S S Q L Q+ + + + Sbjct: 285 ---GAEPETE----DAVKVSVTS-----------------------QSLKQW-LKDKTGV 313 Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429 + T D + + S ++ DT DA H++ ++ L +DD Sbjct: 314 AVFITGDGRPGQGD-----ATSISLVDDTFDAIHAE-----LADLSAEDD---------- 353 Query: 430 DLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-ED 488 K + ++L+ + E FL H K +L GI++ G D Sbjct: 354 -----------------KALAAWLES--DAEKFL---HEAKAAYHMLQGRGITLNGIAHD 391 Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548 L +Y+L G+ ++++ + Q+ L RK + S + +D I+++ Sbjct: 392 TALAAYLLRPGQRTYELPDVYQRHL---RKTLEASSEQLSLLDDTG-------GIDSAVA 441 Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608 I++L + L L +Y L+ P++ ++++ME TGI ++ D L+ + ++ + Sbjct: 442 IMELTVELTKALQEIDSYQLYAELEIPLVSILAKMEATGIAVNVDTLESQQEVFANHVAA 501 Query: 609 LEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD-NP 666 E+ +L+G+ NL+SPKQL +LF L P KTKTG + T A+++EQ+ +P Sbjct: 502 EEKAARELAGDDTLNLNSPKQLQTVLFETLDLPKTKKTKTG-YSTAAKEIEQLAINHPHP 560 Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 + ++L R+ K+K+T + L + R+HT ++ TGRL+S EPNLQNIP++ Sbjct: 561 FLDHLLAHREYQKLKTTL-EGLIKTVQP-DGRIHTTFNQTVASTGRLSSTEPNLQNIPVR 618 Query: 727 TDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 T+ G+ IR AFI + L++ADYSQIE+R++AH+++ L + ++ D+H V + + Sbjct: 619 TESGRTIRSAFIVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYKEGEDLHNYVGSRV 678 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 F V ++KV+ ++RR K +++ ++YG+S F L+ QL IP EA + YF RF G+ +Y Sbjct: 679 FDVPVDKVTSELRRRVKAMSYGLVYGLSAFGLSQQLSIPAGEAKKTMDAYFDRFGGVKKY 738 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 + R++GY T+FGRR + E+ S R ERAA+NAPIQG+AADI + AMI Sbjct: 739 LADVVEQARKDGYTATVFGRRRYLPELISDNRLARENAERAALNAPIQGTAADIIKVAMI 798 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 V ++LE K +++LLQ+HDELV EV E+ +I+ M+ + I+LRVPL+V+ Sbjct: 799 RVDQALEGFK--SRVLLQVHDELVVEVAPGELNKVQEIVEREMDAS----ISLRVPLEVS 852 Query: 966 IKVSNNW 972 +NW Sbjct: 853 AGTGDNW 859 >gi|170782359|ref|YP_001710692.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus] gi|169156928|emb|CAQ02096.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus] Length = 894 Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust. Identities = 296/981 (30%), Positives = 481/981 (49%), Gaps = 115/981 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P S + +G NA+ GF ML LLQ + +H V F Sbjct: 9 LLVIDGHSLAFRAFYALPAESFQNREGQHTNAVHGFIAMLINLLQKEKP----THVGVAF 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR YP YK R + P Q+PL+ A + IP + + EADDI+AT Sbjct: 65 DISRFSFRTREYPGYKGTRGETPVEFTGQVPLLERALKTMNIPTLTKEDHEADDILATLA 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 ++GF V ++S D+D +QLV+ T LY + + + D E V +K+G+ P Sbjct: 125 TQGREQGFRVLVVSGDRDAIQLVNDDVTLLYPSTQGVSQLTRYDAEKVFEKYGVQPGMYP 184 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + AL G++ DN+ G+ +G KTA L +YG+L+ +L + I K +N+ E Sbjct: 185 DIAALVGETSDNLIGVDKVGPKTAVKWLNQYGSLDAVLEHRDEITGKVG-DNLRAQYENV 243 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +R+L L TDV + + L + + P L LEF +L++RV Sbjct: 244 IRNRRLNRLLTDVELPLGPADLERKPIDEPALREVFAVLEFKQLLDRVLKL--------- 294 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 E G + +E + ++ + S + PQ+L E L K Sbjct: 295 ---------EGSGASASSE--------GTPVGAVEQEPSTAPAAPRPQQLLDEELAK--- 334 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 W+ ET +AS + T++ KP+ +++ Sbjct: 335 -------------------WI---ETQSAASPHGLGLTVETQDGKPVGFGLAS------- 365 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 E + + + + + L + K+ + K + R G Sbjct: 366 --ATEAVTLPWQEGRADYAPFERWLASDAP-------------KVMSDAKVQVKAMRRAG 410 Query: 481 ISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE------ILKSRKSSIPIDKI 533 + ++G D+++ ++L G + +A++ ++L E + ++ + P++ Sbjct: 411 LRVQGLAFDVLVAGWLLRPGFTDKSLAALVSRYLMEDLPEPDANQLVPETEALTAPVEAW 470 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 +V EHA+ +++ E+ L V ++ P + V+ +ME+ G+ D+ Sbjct: 471 YTLRV-EHALR--------------EVLDERTLGVMVDIEMPTLLVLVEMELRGVATDRA 515 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L ++SA++ + + L E + G++ NL SPKQL ++LF +L P KTG + T Sbjct: 516 GLAELSAQLQERITGLAERAFAEIGKEINLGSPKQLQEVLFDQLGMPKTRANKTG-FSTD 574 Query: 654 AQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A L + + +P + +LE R SK++ +L I +R+HT Y T TGR Sbjct: 575 AGALADLQASNPHPFLDLLLEHRDASKLRQII-QTLERGIGD-DERIHTTYVQTGTTTGR 632 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 ++S +PNLQNIP++T+ G++IR A + + L++ADYSQIE+RI+AH++ L + F Sbjct: 633 ISSNDPNLQNIPVRTEEGRRIRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAF 692 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 E D+HR V + IFGV VSP MR K +++ + YG+S F L+ QLRIP SEA Sbjct: 693 EVGEDLHRFVGSSIFGVEPADVSPAMRTKVKAMSYGLAYGLSAFGLSKQLRIPSSEAKQL 752 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF RF + +Y+ + R GY ETIFGRR + ++NSP +R+ ERAA+NAP Sbjct: 753 MTDYFARFGAVRDYLRQVVEEARAAGYTETIFGRRRPFPDLNSPNRVLRDNAERAALNAP 812 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGSAADI + AMI + + + +A++MLLQ+HDEL+ EV E I+ M A Sbjct: 813 IQGSAADIMKIAMIRIEADMRERDMASRMLLQVHDELILEVAPGEWDALQAIVTDRMAHA 872 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 +LRVPL+V + ++W Sbjct: 873 A----DLRVPLEVQVGRGDSW 889 >gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4] gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4] Length = 917 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 244/612 (39%), Positives = 359/612 (58%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I W K++ +F T ++D ++ + ++ S K Sbjct: 320 YETIQTWAQFDAWFAKIDAAALTAFDTETTSLDPMTARLVGLSFSVEPGK--------AA 371 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ ++ H D + L ++L+ LK + E K+G ++KYD VL Y I++ G E Sbjct: 372 YLPVA-HRGPDLPEQLPL-DDVLARLKPWLEAADRKKVGQHLKYDAQVLANYDIALNGIE 429 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R+ HD+ S+A + L +++ I D+++ Q +A Sbjct: 430 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALDQAAAYAA 488 Query: 544 ENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL +L P++ E L VY ++ P+ V+ +ME TG+ ID LL S EI Sbjct: 489 EDADITLQLHHVLYPQIAREAGLERVYREIEMPVSLVLRKMERTGVLIDDALLHAQSNEI 548 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y+L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 549 ATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS EPNLQN Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRLASNEPNLQN 667 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+ P +++SADYSQIELRI+AHI+ L + F + DIHR A Sbjct: 668 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAHGEDIHRATA 727 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGV 787 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y+E T+ + GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 788 AQYMEDTRAAAKDQGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V L +LA++M++Q+HDELV EVP++E++ + + M L+VPL Sbjct: 848 SMIAVDDWLTRDRLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA----KLKVPL 903 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 904 VAEVGAGANWEE 915 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 102/256 (39%), Positives = 151/256 (58%), Gaps = 6/256 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKANRP +P L Q+ + A +A G P + ++G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + VI K+G+PPE+++ AL Sbjct: 127 EAEQRGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y +L+ ++ +A IK +N+ + L RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRKL 245 Query: 247 VMLRTDVPITIPLEHL 262 V + T + LE + Sbjct: 246 VTVDTACDLAPHLESI 261 >gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] Length = 885 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 305/983 (31%), Positives = 499/983 (50%), Gaps = 118/983 (12%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R +YA P L R G P + GF N ++ + + E + D Sbjct: 4 LTIIDTFGFFFRNYYALPQL-RNSQGFPTGLLTGFANFIYAI----KNEHDTDYVMFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+E+ P+YKANRP+ PE L QLP+ + G +GFEADD+IA+ Sbjct: 59 SKGKNFRHELDPNYKANRPEAPEELKKQLPVAISWIEKMGFKCYSEEGFEADDVIASAVK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A++ G V I++ DKDL QL+ +YD +K+ +ID E +K+G+ P+K+ +L Sbjct: 119 FAKRHGIKVRIVTHDKDLYQLIDDGRVVIYDPMKKIEIDSEKCFEKFGVYPDKINEYLSL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GD+ DNIPG+ GIG K A LL ++G++ENI N RI + + + E E+A LS++ Sbjct: 179 VGDTADNIPGVKGIGPKGAKKLLDDFGSVENIYANLERIANPRSKSMLEEGRESAFLSKQ 238 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 LV L + I E A + CD P+V Sbjct: 239 LVRLDDSLNIADTFE----------------------------AFYFPCD----NPLV-- 264 Query: 306 INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ-KLSQYPIN 364 +++D+ K ++ E L K+ + P N Sbjct: 265 ---------------------------NIADELEKYELRHMLSRVRNEALHVKIKEAPSN 297 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 + + K + ++ +E +F T+ +DA+++K + + + + Sbjct: 298 TFRAILVDDAKILFNVIEGIEEGSWVAFDTETNALDAYNAKIVGFSFALNEH-------- 349 Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL-HRYGISM 483 E ++ L+ H G+ +E LKK F+++ +G N+KYD V+ + +G+ + Sbjct: 350 EAYYVPLAHHYL--GVGEQIGMEEAKEALKKLFKHK---IVGQNLKYDLAVIENNFGLRL 404 Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRK--SSIPIDKISDSQ 537 + D MLM+++L+ S+ + ++A+++ ++ K+++ + S +P+DK Sbjct: 405 SSSYADTMLMAWLLNP-ESNVGLDTLAKRFFNHDMVKFKDVVSKNENFSHVPLDKAC--- 460 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID----QD 593 E+A E++ + L+L+ L ++ +LL + + ++ P I + +ME GI+ID + Sbjct: 461 --EYASEDAWMTLKLYNKLH-DMLEPRLLEIAKEVEFPFILTLMRMEKEGIKIDGAYFEA 517 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 LLK+ I +L+ I+ L +FNL+S +QLG +LF +L P KTKTG + T Sbjct: 518 LLKRTDGAID----ALKHEIFTLCDAQFNLNSTQQLGTVLFEQLGLPPVKKTKTG-YSTD 572 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT--QRVHTFYSLASTMTG 711 L ++ +P I ILE+R+L K++STY + L ++K + RVHT + T TG Sbjct: 573 ENVLNEL-LDKHPSIAKILEYRELYKLRSTYIEPLLK-LSKESPLGRVHTSFIQTGTSTG 630 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP+KT LG+++R F++ LI DYSQIELR+LAH + + + F Sbjct: 631 RLSSKDPNLQNIPVKTALGREVRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDEAMVKAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DIH A ++FG E+ + R AK+INF ++YG+ P RL+ L I +EA Y Sbjct: 691 RDGKDIHYETALKLFG---EQEAASKRSVAKSINFGLLYGMGPKRLSETLGISMAEAKRY 747 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I+ YF FP I Y+ + + GYVET+ GR+ +D ++ R A+N Sbjct: 748 IESYFATFPTIKAYVMEVAEQAKTTGYVETLLGRKRFFDFEHANAMQYAGY-LREAVNTV 806 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 QGSAAD+ + +M + +L + K+LLQIHDEL+FEV E + +Q +K Sbjct: 807 FQGSAADLIKLSMNKIMATLIHDE--AKLLLQIHDELIFEVVESQ----AQSFALEAQKV 860 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 LR+PLKV+I + NW E Sbjct: 861 MEEIYALRIPLKVSIAMGKNWGE 883 >gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047] gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047] Length = 610 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 242/618 (39%), Positives = 375/618 (60%), Gaps = 24/618 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ Y ++ D+ +W++KL + + TD++D + + I+ + L+ + Sbjct: 9 IDRTKYETLLTQADLTRWIEKLNSAKLIAVDTETDSLDYMSANLVGISFA-LENGEAAYL 67 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 ++ ++D + T + ST L+ +K EN + KIG NIK+D+ + R+GI Sbjct: 68 PLQLDYLD-APKTLEKSTA--------LAAIKPILENPNSHKIGQNIKFDESIFARHGIE 118 Query: 483 MRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQ 537 ++G E D ML+SY L+S GR H++ +A+++L + + + KS + ++I Q Sbjct: 119 LQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQIPLEQ 176 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ ID D L Sbjct: 177 ATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALF 236 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 S EI+ L +LE+ Y L+G+ FNL+S KQL +ILF KL P KT G T + Sbjct: 237 MQSNEIASRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLPVLQKTPKGAPSTNEEV 296 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE+++ + + K ++E R LSK+KSTY D LP +N +T RVHT Y A T TGRL+S Sbjct: 297 LEELSYS-HELPKILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSS 355 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIPI+ + G++IR+AFI+ +++ADYSQIELRI+AH++ L F D Sbjct: 356 DPNLQNIPIRNEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKD 415 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IHR AAEIFGV++++V+ + RR+AK INF +IYG+S F L+ QL I R++A Y+ YF Sbjct: 416 IHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMNLYF 475 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+P + +++ + + GYVET+FGRR++ +INS + R ER AINAP+QG+A Sbjct: 476 QRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTA 535 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI +RAMI + + + H +M++Q+HDELVFEV E++ + I ME A Sbjct: 536 ADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA---- 590 Query: 957 NLRVPLKVNIKVSNNWQE 974 L VPL V + V NW E Sbjct: 591 ELVVPLIVEVGVGKNWDE 608 >gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] Length = 879 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 293/989 (29%), Positives = 491/989 (49%), Gaps = 141/989 (14%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + E L L+DG S +RAFYA P + G NA+ GF M L++ + +H Sbjct: 9 KSEETLLLLDGHSLAFRAFYALPAANFSTTGGQHTNAVYGFLGMFLGLVEQEKP----TH 64 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A FD TFR +P+YKA RP P Q+ L+R + GI ++ + +EADDI Sbjct: 65 IAAAFDLSGPTFREAEFPEYKAQRPSTPPEFKGQIELIRETLKTLGITTLDKESYEADDI 124 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLYD--TVKE-EKIDIEHVIKKWGIPP 176 IA+ G I + D+D +QLV T LY V E + E V +K+G+ P Sbjct: 125 IASLATQGHDAGMNTLICTGDRDSLQLVEDDVTVLYTLRGVSELHRFTPEAVEEKYGVTP 184 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 ++ L AL GD+ DN+PG+PG+G KTA +Q+YG+L+ ++ N I+ K EN+ Y Sbjct: 185 KQYPDLAALRGDTSDNMPGVPGVGPKTAQKWIQKYGSLDGVIDNMDDIR-GKVGENLRAY 243 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 +L+RK+ + D+ + L+ L Sbjct: 244 VADVQLARKITEMVRDLDMVDSLDTL--------------------------------KP 271 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLS---DQTSKI---NSEQTPQKL 350 A+I+P N +AI ++ TT++ F +L + T+ I + TP KL Sbjct: 272 ADIDP---------NDALAIFEKLQFGTTLRNRTFRTLGVEFEDTASIPITEEDLTPGKL 322 Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 L+K + Y D+ + + DI ET+G S + +K + + Sbjct: 323 -ANWLKKNAAYQEGRDAVAEALAV-DIDG-----ETLGLLSAE----------NKGLKLD 365 Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 ++ LD KD+ L+ + + K H+ K Sbjct: 366 LAALDAKDE-------------------------------QVLRTWLADRGAPKWFHDSK 394 Query: 471 YDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529 L + G ++ G E D + +Y++ S + + Q+ + +++ ++ S Sbjct: 395 QSFHALRQQGFALDGVEHDTSVAAYLVRPDLRSWSLGDVLQR---HAGRDLPENSGS--- 448 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 +E + + +L ++ +L +Y ++ P+ ++++ME GI Sbjct: 449 -------------LERAQAVRELVGIMNQELTDAGQAELYFSMEVPLTHILAEMEARGIA 495 Query: 590 IDQDLLKQVSA----EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 +D+ L++++A +I+ + + E D ++ NLSSPKQL +LF P KT Sbjct: 496 VDKAALEELAADYEAQIADEVTAARELAED---DQLNLSSPKQLQKVLFEDFGLPKTKKT 552 Query: 646 KTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 KTG + T A +LE++ ++P + +++ R+ K+KST D L N I+ R+ T ++ Sbjct: 553 KTG-YSTAAAELEKLQQQTEHPFLNHLMAHREYQKMKSTI-DGLINAIDG-DGRIRTTFN 609 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAK 763 TGRL+S EPNLQNIP++T+ G+KIR AF + + L++ADYSQIE+R++AH+++ Sbjct: 610 QKGAATGRLSSSEPNLQNIPVRTEAGRKIRSAFRVGEGYETLLTADYSQIEMRVMAHLSE 669 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L + + D+H V + +F V +++V+P++RR K +++ ++YG+S F L+ QL I Sbjct: 670 DAGLIEAYRAGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLVYGLSAFGLSQQLGI 729 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 EA ++ YF RF G+ Y++K ++ GY ET++GRR + E+ S R Sbjct: 730 SPGEAKGIMENYFDRFGGVKRYLDKVVEAAKETGYTETLYGRRRYLPELASSNRVARENA 789 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ERAA+NAPIQG+AADI + AM+ V ++L + L +++LLQ+HDELV E+ E+ Q+ Sbjct: 790 ERAALNAPIQGTAADIIKLAMLRVDRALRNANLKSRVLLQVHDELVLEIAPGELEQIQQL 849 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + +M+ A +LRVPL V+ NW Sbjct: 850 LEENMDSAA----SLRVPLDVSAGHGENW 874 >gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6] gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6] Length = 917 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 244/612 (39%), Positives = 357/612 (58%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I W K++ +F T +D ++ + ++ S K Sbjct: 320 YDTIQTWAQFDAWFAKIDAAALTAFDTETTALDPMIARLVGLSFSIEPGK--------AA 371 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ ++ H D + E+L+ LK + E+ K+G ++KYD VL YGI + G E Sbjct: 372 YLPVA-HRGPDMP-EQLPIDEVLARLKPWLESADRKKVGQHLKYDAQVLANYGIELNGIE 429 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R+ HD+ S+A + L +++ I D+++ Q +A Sbjct: 430 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAA 488 Query: 544 ENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID LL+ S EI Sbjct: 489 EDADITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEI 548 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y+L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 549 ATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRLASNDPNLQN 667 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+ P +++SADYSQIELRI+AHI+ L + F DIHR A Sbjct: 668 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATA 727 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFTRYPGV 787 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y+E T+ + GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 788 AQYMEDTRTAAKDKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V L +LA++M++Q+HDELV EVP++E++ + + M L+VPL Sbjct: 848 SMIAVDDWLTRDRLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA----KLKVPL 903 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 904 VAEVGAGANWEE 915 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 102/256 (39%), Positives = 150/256 (58%), Gaps = 6/256 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKANRP +P L Q+ + A +A G P + ++G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLVS L +T+ E +D + VI K+G+PPE+++ AL Sbjct: 127 EAERHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y +L+ ++ +A IK +N+ + L R L Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRTL 245 Query: 247 VMLRTDVPITIPLEHL 262 V + T + LE + Sbjct: 246 VTVETACDLAPHLESI 261 >gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5] gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5] Length = 917 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 243/612 (39%), Positives = 357/612 (58%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I W K++ +F T +D ++ + ++ S ++ V Sbjct: 320 YDTIQTWAQFDAWFAKIDAAALTAFDTETTALDPMTARLVGLSFS-IEPGKAAYLPVAHR 378 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 DL D ++L+ L+ + E+ K+G ++KYD VL YGI++ G E Sbjct: 379 GPDLPEQLPID---------DVLARLRPWLESADRKKVGQHLKYDAQVLANYGIALNGIE 429 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R+ HD+ S+A + L +++ I D+++ Q +A Sbjct: 430 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAA 488 Query: 544 ENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID LL+ S EI Sbjct: 489 EDADITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEI 548 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y+L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 549 ATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRLASNDPNLQN 667 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+ P +++SADYSQIELRI+AHI+ L + F DIHR A Sbjct: 668 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATA 727 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFTRYPGV 787 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y+E T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 788 AQYMEDTRTTAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V L +LA++M++Q+HDELV EVP++E++ + + M L+VPL Sbjct: 848 SMIAVDDWLTRDQLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA----KLKVPL 903 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 904 VAEVGAGANWEE 915 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 102/256 (39%), Positives = 149/256 (58%), Gaps = 6/256 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKANRP +P L Q+ + A +A G P + + G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVDGVEADDVIGTLAR 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLVS L +T+ E +D + VI K+G+PPE+++ AL Sbjct: 127 EAERHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y +L+ ++ +A IK +N+ + L R L Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRTL 245 Query: 247 VMLRTDVPITIPLEHL 262 V + T + LE + Sbjct: 246 VTVETACDLAPHLESI 261 >gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804] gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii] Length = 948 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 225/560 (40%), Positives = 342/560 (61%), Gaps = 23/560 (4%) Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 +I L+ H DS + +E+L ++ + ++ K+ H+ KYD V G+++ G Sbjct: 403 ACYIPLA-HRGPDSA-EQLPKREVLERMRAWLQDPARPKLLHHAKYDAHVFANEGVALAG 460 Query: 486 FED-IMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541 +D ML +YVL+S R + +AQ++L T +E+ I D+++ Q + Sbjct: 461 IQDDTMLQAYVLESHRGV-GLNDLAQRYLGRGGITYEELCGKGAKQIGFDEVAVEQAGHY 519 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 A E+++ LQL LRP++ + L +L+ + V++ +E G+++D L + S Sbjct: 520 ACEDADFTLQLHHALRPRVAADAGLERIYQLEIQVSRVLTVVERNGVKVDAAELGRQSHR 579 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + + +L LE+ Y+L+G+ FNL+SPKQLG+ILF +++ P KT G T + L ++ Sbjct: 580 LGQEMLQLEQRAYELAGQPFNLNSPKQLGEILFGRMQLPVVRKTAGGAPSTDEEVLTRL- 638 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+ + +LE+R LSK+KSTY D LP IN RT RVHT YS A+ +TGRLAS +PNLQ Sbjct: 639 AQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINARTGRVHTHYSQAAVVTGRLASSDPNLQ 698 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T+ G+++R AF++ L+SADYSQIELRI+AH++ L Q F DIHR Sbjct: 699 NIPVRTEAGRRVREAFVAE-HGVLVSADYSQIELRIMAHVSDDANLQQAFAAGKDIHRAT 757 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A+EIFGV +++V RR AK INF +IYG+ F LA+ L I R A YI RYF R+PG Sbjct: 758 ASEIFGVALDEVGADQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFARYPG 817 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + +Y+E T+ RQ GYVET+FGRR+ +I + R ERAAINAP+QG+AAD+ + Sbjct: 818 VAQYMEHTRQLARQQGYVETVFGRRLQLPDIRAASGPRRQGAERAAINAPMQGTAADLIK 877 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI----- 956 AM++V L+ +LAT+M++Q+HDEL+ EVP+ E+ +A LP++ Sbjct: 878 MAMVAVQDWLDAERLATRMIMQVHDELILEVPDGELDAV---------RARLPELMCGVA 928 Query: 957 NLRVPLKVNIKVSNNWQEEN 976 LRVPL + V NW++ + Sbjct: 929 RLRVPLVAEVGVGPNWEQAH 948 Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 100/253 (39%), Positives = 148/253 (58%), Gaps = 12/253 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R G P A+ G NML KL+ + + A + A IFD Sbjct: 48 LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVSDHK----ADYAACIFD 102 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++YPDYK++RP +PE L Q+ + A +A G + I+G EADDII T Sbjct: 103 ARGKTFRDDLYPDYKSHRPPMPEDLAAQIEPIHQAVRALGWQVLAIEGVEADDIIGTLAC 162 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A G + + DKDL QLV L +T+ E +D V K+G+PP+++V L Sbjct: 163 QASGMGIRTIVSTGDKDLAQLVDANVTLVNTMSGEVLDETGVRNKFGVPPDRIVDYLMLV 222 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYAETARLS 243 GD+IDN+PG+ +G KTAA L E+G++++++ A IK RE I ++ L+ Sbjct: 223 GDAIDNVPGVAKVGPKTAAKWLAEFGSIDSLVEQADGIKGVAGNNLREAIGQFP----LT 278 Query: 244 RKLVMLRTDVPIT 256 R+L+ ++ D + Sbjct: 279 RQLLTVKCDCDLA 291 >gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD] gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD] Length = 917 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 243/612 (39%), Positives = 356/612 (58%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I W K++ +F T +D ++ + ++ S ++ V Sbjct: 320 YDTIQTWAQFDAWFAKIDAAALTAFDTETTALDPMTARLVGLSFS-IEPGKAAYLPVAHR 378 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 DL D ++L+ L+ + E+ K+G ++KYD VL YGI++ G E Sbjct: 379 GPDLPEQLPID---------DVLARLRPWLESADRKKVGQHLKYDAQVLANYGIALNGIE 429 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R+ HD+ S+A + L +++ I D+++ Q +A Sbjct: 430 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAA 488 Query: 544 ENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID LL+ S EI Sbjct: 489 EDADITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEI 548 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y+L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 549 ATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRLASNDPNLQN 667 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+ P +++SADYSQIELRI+AHI+ L + F DIHR A Sbjct: 668 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATA 727 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFTRYPGV 787 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y+E T+ + GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 788 AQYMEDTRTAAKDKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V L +LA++M++Q+HDELV EVP++E++ + + M L+VPL Sbjct: 848 SMIAVDDWLTRDQLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA----KLKVPL 903 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 904 VAEVGAGANWEE 915 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 102/256 (39%), Positives = 150/256 (58%), Gaps = 6/256 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKANRP +P L Q+ + A +A G P + ++G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLVS L +T+ E +D + VI K+G+PPE+++ AL Sbjct: 127 EAERHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y +L+ ++ +A IK +N+ + L R L Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRTL 245 Query: 247 VMLRTDVPITIPLEHL 262 V + T + LE + Sbjct: 246 VTVETACDLAPHLESI 261 >gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] Length = 917 Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust. Identities = 243/612 (39%), Positives = 357/612 (58%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I W K++ +F T +D ++ + ++ S K Sbjct: 320 YDTIQTWAQFDAWFAKIDAAALTAFDTETTALDPMTARLVGLSFSIEPGK--------AA 371 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ ++ H D + ++L+ LK + E+ K+G ++KYD VL YGI++ G E Sbjct: 372 YLPVA-HRGPDMP-EQLPIDDVLARLKPWLESADRKKVGQHLKYDAQVLANYGIALNGIE 429 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R+ HD+ S+A + L +++ I D+++ Q +A Sbjct: 430 HDTLLESYVLESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAA 488 Query: 544 ENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID LL+ S EI Sbjct: 489 EDADITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQAQSTEI 548 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y+L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 549 ATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYAQAVAVTGRLASNDPNLQN 667 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+ P +++SADYSQIELRI+AHI+ L + F DIHR A Sbjct: 668 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATA 727 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFTRYPGV 787 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+E T+ + GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 788 AHYMEDTRTTAKDKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V L +LA++M++Q+HDELV EVP++E++ + + M L+VPL Sbjct: 848 SMIAVDDWLTRDQLASRMIMQVHDELVLEVPDDELSLVREKLPEMMCGVA----KLKVPL 903 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 904 VAEVGAGANWEE 915 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 102/256 (39%), Positives = 149/256 (58%), Gaps = 6/256 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKANRP +P L Q+ + A +A G P + + G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVDGVEADDVIGTLAR 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLVS L +T+ E +D + VI K+G+PPE+++ AL Sbjct: 127 EAERHGMNVIVSTGDKDLAQLVSDRVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y +L+ ++ +A IK +N+ + L R L Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYDSLDGVIEHAGEIKGVV-GDNLRRALDFLPLGRTL 245 Query: 247 VMLRTDVPITIPLEHL 262 V + T + LE + Sbjct: 246 VTVETACDLAPHLESI 261 >gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902] gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902] Length = 998 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 319/1024 (31%), Positives = 508/1024 (49%), Gaps = 93/1024 (9%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L LVDG S +R+FYA L+ K DG P + GF L + + + +A Sbjct: 10 LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGRPTSVTYGFLKSLLDTGKTFKPQGVA--- 65 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120 + FD TFR++ +YKA+R PE+ L L ++ + +P G+EADD+ Sbjct: 66 -IAFDTAEPTFRHKADTNYKAHRDVAPEVFFQDLEQLQQILSDQMKLPLCMAPGYEADDV 124 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170 + T A G+ V I+S D+DL QLV + LY I + V+ Sbjct: 125 LGTLANRAADAGWGVRILSGDRDLFQLVDNSRDIAVLYMGGGPYAKGSGPTLIQEDGVVS 184 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--K 228 K G+ P+K+V L+ALTGDS DNIPG+ G+G KTA LL++ +L+ + + ++ + K Sbjct: 185 KLGVMPDKVVDLKALTGDSSDNIPGVRGVGPKTAINLLKDNIDLDAVYATLAEVEAEGPK 244 Query: 229 RRENILEYA---------ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279 ++ A + A LSR L + D+P+ E L L+ + L L+ L Sbjct: 245 ASRGAIKGALVGKLRSDRDNAYLSRMLAEILVDIPLPKDPE-LGLQQVDAEGLSDRLEDL 303 Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339 E L+ +V + T G + + T K S + D TS Sbjct: 304 ELNSLVRQVGGF--------------VATFSTGGYGANASSEAEKTPKRSPAKTNPDSTS 349 Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT- 398 I S PQ+ E ++ P I + + +Q VQ+L I DT Sbjct: 350 SIGSAAAPQQGSGE--AEVGAIPPLQPQL--IESNEALQALVQRLMDCTDPKAPIAVDTE 405 Query: 399 ---MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455 ++ F ++ + + + + D ++ I S+ + + + +L L Sbjct: 406 TTDLNPFKAELVGVGVCWGEANDALAYI--PIGHKPPSELSEATPPQQLPLETVLMALSP 463 Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514 + + K N KYD+L+L R+G+++ G D +L Y+ D+ + H + ++++ Sbjct: 464 WLASPQHPKALQNAKYDRLILLRHGLTLNGVVIDTLLADYLRDAA-AKHGLDLMSEREFG 522 Query: 515 Y--TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVYE 570 + T L +K + I + + + + +V +L L LR L + +LL + E Sbjct: 523 FRPTTYGDLVGKKQTFADVAIEPASL--YCGMDVHVTRRLALQLRQTLQAMGPQLLPLLE 580 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 +++P+ V++QME TGI+ID LK +S E+ L LE + ++ FNL+SPKQLG Sbjct: 581 GVEQPLEPVLAQMEATGIRIDVPYLKTLSDELGSTLNRLETDAKQVAEVDFNLASPKQLG 640 Query: 631 DILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 ++LF L +TKTG + T A LE++ D+P++ +LE R LSK+KSTY D+L Sbjct: 641 ELLFDTLGLDRKKSRRTKTG-FSTDATVLEKLE-NDHPVVPLVLEHRVLSKLKSTYVDAL 698 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748 P + T RVHT ++ A T TGRL+S PNLQNIP++T+ ++IR+AF+ L+SA Sbjct: 699 PQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEGWTLLSA 758 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELRIL H++ L + + D+H + A + + + VS RR KTINF + Sbjct: 759 DYSQIELRILTHLSGEEVLQEAYSTGDDVHALTARLLL--DKDDVSADERRLGKTINFGV 816 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR-- 866 IYG+ R A + + +EA +++ +Y R+P + ++E + GYVETI GRR Sbjct: 817 IYGMGAQRFARETGVSSAEAKEFLTKYKQRYPKVFAFLELQERLALSRGYVETILGRRRP 876 Query: 867 IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910 H+D EI+ + + + RAA NAPIQGS+ADI + AM+ + Sbjct: 877 FHFDRNGLGRLLGKDPLEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQLQAV 936 Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970 L + ++LLQ+HDELV EV + + T ++V++ME A + L VPL V V Sbjct: 937 LLSQGIPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENA----VKLSVPLVVETGVGR 992 Query: 971 NWQE 974 +W E Sbjct: 993 DWME 996 >gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989] gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989] Length = 782 Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust. Identities = 242/627 (38%), Positives = 368/627 (58%), Gaps = 31/627 (4%) Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 P+ Y I + ++ W++KL +F T ++D +K + ++ + + + Sbjct: 171 PVVPSDYHTIFTQEQLEGWLEKLSAADLFAFDTETTSLDYMQAKIVGVSFAV--NAGEAA 228 Query: 422 FKVETIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 + V D G L+ E +L+ LK EN + K+G N+KYDK VL + Sbjct: 229 Y----------VPCGHDYMGAPEQLSLECVLAALKPLLENPNKHKVGQNLKYDKHVLLNH 278 Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSS--IPIDKIS 534 I ++G D ML SYV +S + HD+ S+A+ +L S E + +K + + ++I Sbjct: 279 DIDLQGIAYDTMLESYVCNSVATRHDMDSLARFYLDRSTIHFEDVAGKKGAKQLTFNQID 338 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQD 593 +A E+++V LQL + P L E L HV E ++ P++ V+S++E G +D Sbjct: 339 IEIAAPYAAEDADVTLQLHQAIWPTLQQEPTLQHVLESIEIPLLPVISRIERNGALVDAT 398 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 LL Q S E+ + L LE+ +D++GE+FNLSSPKQLG ILF KL+ P KT G T Sbjct: 399 LLGQQSIELEQRLKELEKEAFDIAGEEFNLSSPKQLGVILFEKLELPIIKKTPKGAPSTA 458 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + L+++ D P+ K ++E R LSK+KSTY D LP IN T R+HT Y A T TGRL Sbjct: 459 EEVLQELAL-DYPLPKVLIEHRGLSKLKSTYTDKLPQMINPATGRIHTSYHQAVTATGRL 517 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S +PNLQNIPI+ G++IR+AF++P K+++ADYSQIELRI+AH++ L + F Sbjct: 518 SSSDPNLQNIPIRNAEGRRIRQAFVAPKGYKILAADYSQIELRIMAHLSGDEGLLEAFNQ 577 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 D+H AAE+FGV +++V+ + RR AK INF +IYG+S F LA QL + R++A YI Sbjct: 578 GKDVHSATAAEVFGVELDQVTQEQRRRAKAINFGLIYGMSAFGLAKQLGVGRNDAQQYID 637 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF R+PG+ Y++ + +GYVET+ GRR++ EIN+ R ER AINAP+Q Sbjct: 638 VYFERYPGVKSYMDGVRQQAAVDGYVETLEGRRLYLPEINARNGMRRQAAERTAINAPMQ 697 Query: 894 GSAADITRRAMISVHKSL------EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 G+AADI +RAMI+V + L ++ + KM++Q+HDELV EV E ++ + Sbjct: 698 GTAADIIKRAMIAVDQWLCPTNPKDESAVNAKMIMQVHDELVLEVKESDLDAVRE----K 753 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ + L VPL V++ V +NW E Sbjct: 754 LKRVMTTTVELSVPLIVDVGVGDNWDE 780 Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 7/160 (4%) Query: 137 IIST-DKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPG 195 ++ST DKD+ QLV+ L +T+ E +D+ V +K+GIPP ++ AL GD +DNIPG Sbjct: 1 MVSTGDKDMAQLVNQHVTLVNTMTETVMDVAGVEEKFGIPPNLIIDFLALMGDKVDNIPG 60 Query: 196 IPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETARLSRKLVML 249 + G+G KTA LLQ G ++ I N I+ KK E + E E ARLS L + Sbjct: 61 VAGVGEKTALALLQNVGGVDAIYENLESIRSLDFRGAKKMPEKLAENQEAARLSYALATI 120 Query: 250 RTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 +TDV + + L L ++ + L +F ++ + Sbjct: 121 KTDVDVGVALTDLQQKEIDAEALRQLYTEYDFHGWLDELG 160 >gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994] gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994] Length = 909 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 304/977 (31%), Positives = 489/977 (50%), Gaps = 88/977 (9%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D F +R+FYA P L +H G P + GF N + L K+ + + D Sbjct: 8 IIDTFGFFFRSFYALPPLKNRH-GFPTGLLTGFINFIASL----HKDHSSDYLIFALDAK 62 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 +FR EI P+YKANR PE L+ QLP+ G ++ G+EADD+IA+ A Sbjct: 63 GPSFRAEIDPNYKANRSPAPEELIQQLPIAIDWIDKMGYKSLSQSGYEADDMIASVVRQA 122 Query: 129 EKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 + GF V ++S DKDL QL+ L D + ++ ++ H +K+G+ P + + Q+L G Sbjct: 123 RQHGFLVRVVSHDKDLYQLIDDDRVVLVDAISKKVMNERHCDEKYGVHPCQFIDYQSLIG 182 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247 D+ DN+PG+ GIG TA LL ++G L+ + + + R + Y + A SR+LV Sbjct: 183 DTADNVPGVKGIGKVTAQKLLSQFGTLDTLYERIEEVTPPRIRGLLETYRDDAFRSRELV 242 Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDIN 307 L+ DV T+ + N FL + L++ Y+ +A + Sbjct: 243 RLKDDVFDTLDFSEFAMHFDN-----PFLPI--YDDLVH-----YEMNAV--------LR 282 Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS 367 T + K + E++ S + Q+ K + PQ L+ L I++D+ Sbjct: 283 TLKAKALFEESQ------------PSNTPQSEKTEKAEVPQCDSLDGCSVL----IDSDA 326 Query: 368 YTKIVNTKDIQQWVQKLETIGS---ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 + +ETI +F T +D + + ST D K T + V Sbjct: 327 -----------ALIALMETIADDALIAFDTETTGLDPSKDHLVGFSFST-DGK--TGYYV 372 Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GIS- 482 + L V G T+ ++ FE+ IGHNIK+D + R+ G+ Sbjct: 373 PMMHSYLGV-------GDQVSTEAAAKAIRLIFEHR---VIGHNIKFDLHFVTRFLGVDR 422 Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542 + + D M+++++ DS RS + +++Q L + + K ++ ++A Sbjct: 423 LSIYADTMVLAWLTDSSRSLA-MDNLSQSLLHHEMIHFKDTVKKGENFASVAIEDACKYA 481 Query: 543 IENSNVILQLWLLLRPKLIV----EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 E++ + +L+ +L+ +L++ E L ++ ++ P + ME GI +D +L+ Sbjct: 482 GEDAYITYRLYEVLKEQLLLKGGQEALDEAFD-VEFPFTLTLLGMEKEGIAVDTAVLELF 540 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 E++ + +L E I+ G FNL+SPKQLG ILF L P G KTKTG + T Q LE Sbjct: 541 KKEVAHEIATLTEQIHSACGTVFNLNSPKQLGVILFETLGLPHGKKTKTG-YSTDEQVLE 599 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI-NKRTQRVHTFYSLASTMTGRLASLE 717 + ++P+I +L++R+ K+ STY + L N + R++T + T TGRL+S Sbjct: 600 GLQF-EHPMIPMLLQYREYHKLYSTYIEPLIALAQNDPSSRIYTSFVQTGTATGRLSSKN 658 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIP+KT LG +IR AF++P KKLI DYSQIELR+LAH ++ T L F DI Sbjct: 659 PNLQNIPVKTALGMRIREAFVAPRGKKLIGIDYSQIELRLLAHFSEDTVLVNAFNEGHDI 718 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H A +FG + + + R AKT+NF ++YG+ +L+ L I EA + I+RYF Sbjct: 719 HMQTAIALFGA---EDASRKRNIAKTVNFGLLYGMGQKKLSDTLGITTKEAKEIIERYFE 775 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 FP + Y ++ GYVET+ RR ++D S ++ ER ++N QGSA+ Sbjct: 776 TFPSVKGYFNGIVEQAKEIGYVETLLHRRRYFD-FGSATPMLKAAYERESVNTVFQGSAS 834 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 D+ + +M + + L +MLLQIHDEL+FEV + + V +ME+ + Sbjct: 835 DLIKLSMNKIDTMIRTEGLRARMLLQIHDELIFEVDADVAEEYAVRFVDAMERI----LE 890 Query: 958 LRVPLKVNIKVSNNWQE 974 LRVPLK ++ + N+W E Sbjct: 891 LRVPLKTSMHIGNHWGE 907 >gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247] gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247] Length = 949 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 302/1021 (29%), Positives = 487/1021 (47%), Gaps = 153/1021 (14%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + K G NA+ GF +ML LL++ +H A F Sbjct: 26 LMLLDGHSLAYRAFFALPAENFKTATGQTTNAVYGFTSMLINLLRDEEP----THIAAAF 81 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+E+YP YKA R K P+ Q+ L + A GIP + I+G+EADDIIAT Sbjct: 82 DVSRKTFRSEMYPAYKAQRSKSPDEFNGQVDLTKEVLDALGIPVMAIEGYEADDIIATLA 141 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 A+ EG++V +++ D+D +QLV+ + T LY V E + V KK+G+ P + Sbjct: 142 TQADAEGYSVLVVTGDRDSLQLVNDSVTVLYPRKGVSELTRFTPAEVEKKYGLTPTQYPD 201 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238 AL GD DN+PGIPG+G KTA+ ++EYG+L +++ + +K K R N+ Sbjct: 202 YAALRGDPSDNLPGIPGVGEKTASKWIREYGSLASLVDHVDEVKGKVGDALRANL----A 257 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 + + +R+L L D+ + + L + + R+ LEF L +R+ Sbjct: 258 SVQTNRQLTELVRDMQLPAGPDELAMVGWDRDRIHQLFDDLEFRVLRDRL---------- 307 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 FS+LS T + S Sbjct: 308 --------------------------------FSTLSSATPEAES--------------- 320 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 D ++ +++ W+ + G + + + + P +AI+ D Sbjct: 321 -----GFDLDGAVLGQGEVRAWLAEHAGTGRSGLAVTAPHV-VVGADPTGLAIAAADGT- 373 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 + ++D++ + D L + + K H +K+ L Sbjct: 374 -------SAYVDVTAVDADDEQA-----------LADWLADPAMGKALHEVKWGIHALRS 415 Query: 479 YGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS-----SIPIDK 532 G ++ G D L +Y++ G+ + ++ +A L Y R+E+ S S+ D Sbjct: 416 RGWTLAGVTSDTSLAAYIVRPGQRTFNLDDLA---LRYLRRELRADDGSGDGQLSLLDDD 472 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 +++ E + + +++L +L +L L + ++ P+ V++ +E GI +D Sbjct: 473 GGAAKLAEQHMLEARAVVELAEVLDTELDRIDSLPLLTEMELPLAFVLADLEAAGIAVDV 532 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D ++ ++ + YD+ GE+ NL SPKQL +LF KL P KTKT + T Sbjct: 533 DHFGELEKNFAQRIRVAANAAYDVIGEQINLGSPKQLQTVLFDKLDMPKTKKTKT-GYTT 591 Query: 653 TAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 A L+ + ++P + ++LE R +++K T D L + R+HT ++ TG Sbjct: 592 DADALQALYEKTEHPFLAHLLEHRDATRLKVT-VDGLLKSVAD-DGRIHTTFNQTIAATG 649 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI--------------------SPPTKK------- 744 RL+S EPNLQNIP++T G++IR+ FI P Sbjct: 650 RLSSTEPNLQNIPVRTAAGREIRQGFIVGAGSGASGDGGVGAGSGASGPDGVGAGSGSSG 709 Query: 745 -----------LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 L++ADYSQIE+RI+AH+++ L + F D+H V + FGV I++V Sbjct: 710 HDGGTGDGFDCLMTADYSQIEMRIMAHLSEDAGLIEAFNTGEDLHNFVGSRAFGVPIDEV 769 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 + +MR K +++ + YG+S F LA QL+I R EA + + YF RF G+ +Y+ Sbjct: 770 TTEMRHRVKAMSYGLAYGLSAFGLAAQLKISRDEAKEQMDAYFARFGGVRDYLHDVVAEA 829 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 R+N Y T+FGRR + ++NS R ER A+NAPIQG+AADI + AMI+VHK L+ Sbjct: 830 RRNEYTATLFGRRRYLPDLNSDNWQRRQSAERMALNAPIQGTAADIIKVAMINVHKRLQS 889 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +L ++MLLQ+HDELV EV E ++ M A I L VPL+V++ +W Sbjct: 890 EELRSRMLLQVHDELVVEVATGERDAVEAVVREEMGAA----ITLSVPLEVSVGFGRSWD 945 Query: 974 E 974 + Sbjct: 946 D 946 >gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1] gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1] Length = 922 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 246/618 (39%), Positives = 360/618 (58%), Gaps = 31/618 (5%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET- 426 Y I+ + +W+ KL+ + T ++D ++ + + SF VE Sbjct: 323 YDTILTEAQLDEWIAKLKQASLFAVDTETTSLDYMVAELVGM-----------SFAVEAG 371 Query: 427 --IFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 ++ L+ D G L K+ L L+ E+ K+G N+KYD VL GI+ Sbjct: 372 KAAYLPLA----HDYVGAPQQLDKQFALEKLRPILEDAKLKKVGQNLKYDISVLANAGIT 427 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538 ++G D ML SYV +S S HD+ +A K+L + ++I + ++IS Sbjct: 428 LQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAFEDIAGKGAKQLTFNQISLETA 487 Query: 539 QEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ L+L L P+L E +L V+ ++ P+I ++S +E G+ ID LL Q Sbjct: 488 APYAAEDADITLRLHQHLWPRLEKEAELASVFTDIELPLIHILSDIERQGVFIDSMLLGQ 547 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E+++ + LE YD++GEKFNLSSPKQL + F KL +P KT G T + L Sbjct: 548 QSEELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVL 607 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 ++ D P+ K ILE R L+K+KSTY D LP +N +T RVHT Y A+ TGRL+S E Sbjct: 608 VELAL-DFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGRLSSSE 666 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+T G++IR+AFI+P +K+++ADYSQIELRI+AH+++ L F DI Sbjct: 667 PNLQNIPIRTVEGRRIRQAFIAPEGRKILAADYSQIELRIMAHLSQDAGLLNAFAEGKDI 726 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL IPR+EA YI YF Sbjct: 727 HRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYIDTYFA 786 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ Y+E+T+ GYV T+FGRR++ EI + R ERAAINAP+QG+AA Sbjct: 787 RYPGVLRYMEETRASAADLGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAA 846 Query: 898 DITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 DI ++AMIS+ ++ D + M++Q+HDELVFEV ++ T Q + M KA Sbjct: 847 DIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAKAA---- 902 Query: 957 NLRVPLKVNIKVSNNWQE 974 NL V L + +NW E Sbjct: 903 NLDVELLAEAGIGDNWDE 920 Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 111/291 (38%), Positives = 164/291 (56%), Gaps = 13/291 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRA+YA P L+ G A+ G NML LL SR + SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYQP--SHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRN++Y +YKA+RP +P+ L Q+ PL R+ +A G+P I I G EADD+I T Sbjct: 62 FDAKGKTFRNDLYQEYKAHRPPMPDDLRSQIEPLHRI-IRALGLPLISIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +E AV I + DKD+ QLV L +T+ + + E V K+G+ P++++ Sbjct: 121 IARRASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GD DNIPG+PG+G KTA +L G++ N+L ++ + K I++ A Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVSELAFRGSKTMAAKIIDNA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + RLS +L ++TDV + L + + LI +EF + + + Sbjct: 241 DMLRLSYELATIKTDVELEQDWHELTAKPADRDELIKCYGEMEFKRWLAEI 291 >gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126] gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126] Length = 936 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 224/541 (41%), Positives = 343/541 (63%), Gaps = 23/541 (4%) Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHD 504 ++I K+ ENE KIG N+KYD V+ YG+ ++G D ML Y+LD + H+ Sbjct: 405 AQKIADEFKEVLENEDITKIGQNLKYDIQVMRNYGVRVQGKMFDTMLAHYLLDP-ETRHN 463 Query: 505 IASIAQKWLSYT---------RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555 + +A+ +L+Y+ +K + + +P++ V E+A E++++ LQL + Sbjct: 464 MDVMAENYLNYSPVSITDLIGKKGVKQGNMRDVPVE-----DVVEYAGEDADITLQLKHI 518 Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615 L ++ L + +++P+ V+++ME G++ID+D L ++S E+ L +E I++ Sbjct: 519 LEKEIKENNLESLLHDVEEPLSYVLAEMEYEGVKIDKDALSKMSKELETAALEAQEKIFE 578 Query: 616 LSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674 L+G++FN++SPKQLG+ILF K+K KTKTGQ+ T + L ++ ++ I ILE+ Sbjct: 579 LAGQEFNIASPKQLGEILFDKMKLVDKPKKTKTGQYATGEEILSKL-ANEHEIADKILEF 637 Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734 R+ K+KSTY D+LP I+K+ RVHT Y A TGRL+S PNLQNIPI+T+ G+ IR Sbjct: 638 REYQKLKSTYVDALPKLISKKDGRVHTDYRQAVAATGRLSSNNPNLQNIPIRTEKGRLIR 697 Query: 735 RAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 +AF+ +L++ADYSQIELRI+A ++ + + F+N DIH AA++FGV+++ V Sbjct: 698 KAFVPRDENYQLMAADYSQIELRIMAAFSQDEAMMEAFKNGRDIHATTAAKVFGVDLDDV 757 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 P MRR AK +NF IIYGIS F LA L I R+EA+D IK YF FP +H+Y+EK K Sbjct: 758 DPGMRRKAKEVNFGIIYGISAFGLAQNLNISRTEASDIIKAYFKEFPRVHDYMEKVKEDA 817 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 R N YV TI GR+ +INS +IR ER AINAPIQGSAAD+ + AMI++HK +E Sbjct: 818 RANEYVTTILGRKRWLRDINSRNQTIRGYAERNAINAPIQGSAADMIKIAMINIHKWMEK 877 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 L +KM++Q+HDEL+F+ ++EI +V M+ A + L VP+++ + +++NW Sbjct: 878 ENLKSKMIMQVHDELIFDAHKDEIDKLKDKVVDLMKNA----MELDVPMEIGVGIADNWS 933 Query: 974 E 974 E Sbjct: 934 E 934 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 108/295 (36%), Positives = 168/295 (56%), Gaps = 15/295 (5%) Query: 2 QKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 + + LFL+D + IYRA +A TP ++ K G+ A GF N L ++L+ + Sbjct: 6 ESDKKLFLLDAMALIYRAHFAFSKTPRINSK--GMNTGAALGFTNSLLEILKKEK----P 59 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H V FD A TFR+E +P YKA R + PE + +P V+ +AF IP + + GFEAD Sbjct: 60 THIGVAFDTSAPTFRHEEFPAYKAQREEQPEDIRVAIPYVKKIVEAFNIPVLIMDGFEAD 119 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGI 174 DII T A ++GF V +++ DKD Q+V+ LY + + +E V KK+ I Sbjct: 120 DIIGTIAKQAGEDGFKVYMMTPDKDYAQMVTENVFLYKPAFMGNGVDVLGVEEVKKKFDI 179 Query: 175 PP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 E+++ + L GD++DNIPGIPG+G KTA L++YG++E +L + +K K +E + Sbjct: 180 DRVEQVIDILGLQGDAVDNIPGIPGVGAKTAIKFLKQYGSVEGLLEHTDELK-GKMKEKV 238 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A LS+KL ++ DVP+ + L+L++ N L + LEF ++ RV Sbjct: 239 EANKEQALLSKKLATIKVDVPLAYEPDKLVLDEPNEEALRELFEELEFRTIMKRV 293 >gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294] gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294] Length = 907 Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust. Identities = 300/981 (30%), Positives = 496/981 (50%), Gaps = 97/981 (9%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D F +R+FYA P R DG P + GF N + L +KE + + D Sbjct: 7 VIDTFGFFFRSFYALPQHLRTKDGFPTGLLTGFTNFIATL----QKEHDSDYIIFAIDSK 62 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFRNEI +YKANR P L QLP+ G + GFEADDIIAT Sbjct: 63 GETFRNEIDVNYKANRSAPPPELTQQLPVAIEWINKMGYKTLGKSGFEADDIIATVVRCV 122 Query: 129 EKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 +++G+ + ++S DKDL QL+ + D +K++ ++ + K+G+ P++ + Q++ G Sbjct: 123 KEKGYKIRVVSHDKDLYQLIDDDKVVIVDAIKKKYVNEKACYDKYGVTPKQFIDYQSILG 182 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247 DS DN+PG+ GIG A LL+EYG L+NI + IK +++ ++E E A +S++LV Sbjct: 183 DSADNVPGVKGIGKVGAEKLLKEYGTLDNIYAHIDEIKGATQKK-LIESREQAYMSKELV 241 Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDIN 307 L +V ++C + E +D+ Sbjct: 242 TLHPNV--------------------------------------FECKEFDFEEYKMDV- 262 Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS 367 EN + I E+ +K Q + L +T + TP++ E QKL + + + Sbjct: 263 --ENPFLNIYDEL-----VKYEQNAIL--RTLHAKNMVTPEQK--ENAQKLQESCTDKSA 311 Query: 368 -----YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 T + + K++ + KL +F T +D ++K + + S D+ ++ Sbjct: 312 KLEFKATLLSDEKELNSVLNKLNKETIVAFDTETTGLDYINNKLVGFSFSF---NDEEAY 368 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--G 480 V L V D K+ + +++ F ++ +GHNIK+D + R+ Sbjct: 369 YVPFGHFYLGV---ADQVSKDVAKQA----MRRIFNSK---VVGHNIKFDLHFVTRFLEE 418 Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540 + + D M+++++++ S+ + ++ K L + + K + Sbjct: 419 KDLPVYCDSMILAWLINP-ESALSLDKLSDKLLGHEMVHFKDTVKKGENFSTVELDDACV 477 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYER---LDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++ + +L+ L KL ++ H+ E ++ P + + +ME GI++D L++ Sbjct: 478 YAAEDAFITRKLYKLFLKKLELQDATHLIEEAKTVEIPFMHTLLKMEEEGIEVDTGFLEK 537 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 E+ + L L ++IY+L+G +FN++S +QLG+ILF KL P G KTKTG + T + L Sbjct: 538 FLVEVKETLEYLTKSIYELAGSEFNINSTQQLGNILFEKLGLPVGKKTKTG-YSTNEKVL 596 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASL 716 + +PII +LE+R++ K+ STY D L N+ Q R+HT + T TGRL+S Sbjct: 597 SSLK-DKHPIIPKLLEYREVHKLYSTYIDPLLKLANEDEQHRIHTSFVQTGTATGRLSSK 655 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQNIP +T LG KIRR F++ KK I DYSQ+ELR+LAH ++ L F + D Sbjct: 656 NPNLQNIPTRTPLGAKIRRGFVAGEGKKFIGIDYSQMELRLLAHFSQDPVLVNAFMHDKD 715 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A +FG E+ + R AKT+NF ++YG+ P +L+ L I EA + I++YF Sbjct: 716 IHLQTAIVLFG---EEEAAHKRNIAKTVNFGLLYGMGPKKLSDTLGITTKEAKEIIEKYF 772 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 F + Y ++ GYVET+ GRR ++D N+ R ER ++N+ QGS Sbjct: 773 ESFHTVKAYFRSIVESSKEKGYVETLLGRRRYFDYENAT-PMYRAAYERESVNSVFQGSV 831 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE---EEITTASQIIVHSMEKACL 953 +D+ + +M +H + + KL KMLLQIHDEL+FEV E +E+ + I+ + Sbjct: 832 SDVIKLSMNKIHTIINEEKLQAKMLLQIHDELIFEVDEKVADELGNRFRDIMDHI----- 886 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 + L +PLK ++ + +NW E Sbjct: 887 --VELNIPLKASLNIGDNWGE 905 >gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977] gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus] Length = 902 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 298/986 (30%), Positives = 485/986 (49%), Gaps = 115/986 (11%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 K+ L L+DG+S +RAFYA P + K GL NA+ GF +ML LL ++ +H Sbjct: 11 KQPTLLLLDGNSLAFRAFYALPAENFKTQSGLTTNAVYGFTSMLINLL----RDEAPTHV 66 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 A FD TFR++ YP+YKA R P+ Q+ + + QA GI + +GFEADDII Sbjct: 67 AAAFDVSRKTFRSDRYPEYKATRSATPDEFRGQIDITKEVLQALGITVLAEEGFEADDII 126 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPE 177 AT + EGF V +++ D+D +QLV+ T LY + E V++K+G+ P Sbjct: 127 ATLATQGQAEGFKVFVVTGDRDSLQLVNEDVTVLYPRKGVSDLTRFTPEAVVEKYGLTPS 186 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENIL 234 + AL GD DN+PGIPG+G KTA+ + EYG+L+ ++ A ++ K R N+ Sbjct: 187 QYPDFAALRGDPSDNLPGIPGVGEKTASKWILEYGSLQELVDKADTVRGKVGDSLRANL- 245 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 + L+R+L L VP+ L L + ++ LEF L +R+ T + Sbjct: 246 ---ASVILNRELTDLVRTVPLPYVPAQLALAPWDRDQIHRLFDDLEFRVLRDRLFETLE- 301 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 A+E E+D E Sbjct: 302 --------------------AVEPEVD-------------------------------EG 310 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 Q Q + + W+ + G S + T + A+AI++ Sbjct: 311 FQLAGQ----------ALEPGTVAAWLAEHTGDGRRSGLAVVGTYTPYDGDATAVAIASA 360 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 D + +ID + T D + L ++ + K H K Sbjct: 361 DG--------DGAYIDTTTVTPDDE-----------AALAEWLADAARPKALHEAKQAIH 401 Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL-----KSRKSSI 528 L G + G D L +Y++ G+ S + ++ L Y R+E+ + + S + Sbjct: 402 ALAGRGWELGGVTSDTALAAYLVRPGQRSFALDDLS---LRYLRRELRAEDDGEQQLSLL 458 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 D D++ + + + ++ L L +L + + ++ P+ V++ +E GI Sbjct: 459 DEDGAGDAKAAQAQMLRARAVIDLADALDVELERIESAGLLTDMELPVQRVLAGLESVGI 518 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D D L + + + + + Y + G++ NL SPKQL +LF +L P KTKT Sbjct: 519 AVDTDHLSSLQNQFASGIREAADAAYAVIGKQINLGSPKQLQVVLFDELGMPKTKKTKT- 577 Query: 649 QWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 + T A L+ + + +P ++++L R ++++K T D L + R+HT ++ Sbjct: 578 GYTTDADALQTLFDKTGHPFLEHLLTHRDVTRLKVT-VDGLLKSVAA-DGRIHTTFNQTI 635 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITP 766 TGRL+S EPNLQNIP++T+ G++IR F+ ++L++ DYSQIE+RI+AH++ Sbjct: 636 AATGRLSSTEPNLQNIPVRTEAGREIRDGFVVGAGYRELMTVDYSQIEMRIMAHLSADEG 695 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F D+H VAA FGV I++V+ ++RR K +++ + YG+S + LATQL+I Sbjct: 696 LIEAFNTGEDLHSFVAARAFGVPIDEVTAELRRRVKAMSYGLAYGLSAYGLATQLKISND 755 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA + + +YF RF G+ +Y+ + R++GY T+ GRR + +++S R ERA Sbjct: 756 EAKEQMDQYFSRFGGVRDYLRAVVDQARKDGYTSTVLGRRRYLPDLDSGDRLRREAAERA 815 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 A+NAPIQGSAADI + AMI+ K+L D L ++MLLQ+HDEL+FEV E E + ++ Sbjct: 816 ALNAPIQGSAADIIKVAMITTDKALRDKGLRSRMLLQVHDELLFEVAEGERESLEALVRK 875 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972 +M A L VPL+V++ +W Sbjct: 876 TMGSAY----PLDVPLEVSVGYGRSW 897 >gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] Length = 986 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 321/1027 (31%), Positives = 504/1027 (49%), Gaps = 111/1027 (10%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L LVDG S +R+FYA L+ K DG P + GF L LL N + S Sbjct: 10 LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGTPTSVTYGF---LKALLDNCKGLS-PQGI 64 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120 + FD TFR++ +YKANR P++ L L + +P G+EADD+ Sbjct: 65 VIAFDTAEPTFRHQADVNYKANRDVAPDIFFQDLKQLQEILENNLQLPLCLAPGYEADDV 124 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170 + T A ++G+ V I+S D+DL QLV LY + ID V+ Sbjct: 125 LGTLANQASRDGWGVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKSSGPSLIDEAGVLS 184 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--K 228 K G+ P K+V L+ALTGDS DNIPG+ G+G KTA LL+E G+L+ I + ++ + K Sbjct: 185 KLGVIPNKVVELKALTGDSSDNIPGVKGVGPKTAITLLKENGDLDGIYNALAEVEAEGEK 244 Query: 229 RRENILEYAETARLSRK-----LVMLRTDVPITIPLE---HLILEDCNGPRLISFLKALE 280 ++ A ++LS L + ++ + IPL L L + L L +LE Sbjct: 245 ASRGAIKGALKSKLSNDRDNAYLSLHLAEILVDIPLPKAPRLELGSVDNDGLTDRLSSLE 304 Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340 L+ +V + V ++ K E E + T SS + S Sbjct: 305 LNSLVRQVPS-----------FVATFSSGGFKANRHELEPSKSATSPVEPESSTETKVSN 353 Query: 341 INSEQT--PQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKL----ETIGSASFKI 394 N + PQ I N +++Q+ V++L + + + Sbjct: 354 DNEQPALEPQL---------------------ITNPEELQELVKRLMGYRDRLKPVALDT 392 Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQD---STGKNTLTKE-IL 450 T ++ F ++ + + + + D ++ I + H + + L E +L Sbjct: 393 ETTALNPFCAELVGLGVCWGEGLQDLAY------IPIGHHPPAELLEAEAACQLPLEAVL 446 Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509 + + + K N KYD+L+L R+G+++ G D +L Y+ D+ + H + +A Sbjct: 447 KAIAPWLASNDHPKALQNAKYDRLILLRHGLALEGVVMDTLLADYLRDAA-AKHGLEVMA 505 Query: 510 QKWLSYTRKEI--LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ T L + + I + + + L L L + + + KLL Sbjct: 506 EREFKITPTGFSELVGKGQTFADVAIPTASLYCGMDVHLTRRLALRLRAQLEDMGAKLLP 565 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + E++++P+ V++ ME TGI+ID L+ +S E+ + L LEE + +G FNL+SPK Sbjct: 566 LLEQVEQPLEPVLALMEATGIRIDLPYLQTLSVELGETLERLEEQAREAAGVDFNLASPK 625 Query: 628 QLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 QLG++LF L +TKTG W T A LE++ D+P++ +LE R LSK++STY Sbjct: 626 QLGELLFETLGLNRKKSRRTKTG-WSTDANVLEKLEA-DHPVVPLVLEHRVLSKLRSTYV 683 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745 D+LP + T RVHT ++ A T TGRL+S PNLQNIPI+T+ ++IR+AF+ +L Sbjct: 684 DALPQLVESETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQENWQL 743 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 +SADYSQIELRIL H++ L + F N D+H + A + ++ ++VS RR KTIN Sbjct: 744 LSADYSQIELRILTHLSGEEVLQEAFRNGDDVHALTARLL--LDKDEVSSDERRLGKTIN 801 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F +IYG+ R A + ++EA D++ RY R+ + ++E + GYVET+ GR Sbjct: 802 FGVIYGMGAQRFARSTGVSQAEAKDFLSRYKQRYAKVFTFLELQERLALSEGYVETLLGR 861 Query: 866 R--IHYDEIN----------------SPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 R H+D + + + RAA NAPIQGS+ADI + AM+ + Sbjct: 862 RRPFHFDRNGLGRLLGKDPMDIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQL 921 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 + L L ++LLQ+HDELV EV + Q++V +MEKA + L VPL V Sbjct: 922 QEKLTAADLPARLLLQVHDELVLEVDPTALEDVQQLVVQTMEKA----VELSVPLVVETG 977 Query: 968 VSNNWQE 974 + +NW E Sbjct: 978 IGDNWME 984 >gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057] gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057] Length = 953 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 229/533 (42%), Positives = 336/533 (63%), Gaps = 12/533 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIA 506 +I++ L+ +ENE LK+G NIKYD +VL YG+ +RG D ML YVL H++ Sbjct: 425 KIINELRPLYENEKSLKVGQNIKYDMIVLQNYGVQVRGALFDTMLAHYVLQP-ELRHNMD 483 Query: 507 SIAQKWLSYTR---KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 +A+ +L Y E++ ++ K+ + + V +A E++++ L+L +L +L Sbjct: 484 YLAEIYLHYQTIHIDELIGAKGKNQKNMRDLPAEDVYRYACEDADITLKLKNVLEKELKE 543 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 + H++ ++ P++ V+ +E G+++D + LKQ S + L +E+NIY+L+GE FN Sbjct: 544 QGAEHLFYEIEMPLVPVLVNIETNGMRLDTEALKQSSEHFTVRLQEIEKNIYELAGETFN 603 Query: 623 LSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 + SPKQ+G++LF KLK AK TKTGQ+ T+ + LE + G + +I ILE+R L K+ Sbjct: 604 IGSPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLR-GKHAVIGKILEYRGLKKLL 662 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 STY D+LP IN RT R+HT ++ A T TGRL+S PNLQNIPI+ + G++IR+AFI Sbjct: 663 STYIDALPQLINSRTGRIHTSFNQAVTSTGRLSSSNPNLQNIPIRDEDGKEIRKAFIPDD 722 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 + SADYSQIELRI+AH+++ + F + DIH AA+I+ ++IE+V+ MRR A Sbjct: 723 GCEFFSADYSQIELRIMAHLSEDKNMIDAFLSGHDIHAATAAKIYKIDIEEVTSDMRRKA 782 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 KT NF IIYGIS F LA +L + R EA + I YF +P + EY++K+ R+NGYVET Sbjct: 783 KTANFGIIYGISVFGLAERLNVSRQEAKELIDGYFETYPQVKEYMDKSIQVARENGYVET 842 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 IF R+ +INS + +R ER AINAPIQGSAADI + AM +++ + +KL KM+ Sbjct: 843 IFHRKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMAHIYQRITSNKLKAKMI 902 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LQ+HDEL F VP E QI++ ME A + VPLK + NNW E Sbjct: 903 LQVHDELNFSVPASEKELVQQIVIEEMEHAY----RMHVPLKADCGWGNNWLE 951 Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 111/299 (37%), Positives = 167/299 (55%), Gaps = 22/299 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MNSTDKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 SH V FD TFR+E Y YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PSHIGVAFDPSGPTFRHEAYEQYKAQREETPEAIRLSVPVIKDIIRAYRIPILEVSGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A K+G +++ DKD QLVS +Y T E + IE V K+ I Sbjct: 115 DDVIGTLATEAGKQGITTYMMTPDKDYGQLVSDNVFMYRPKHTGGFEVMGIEEVKAKFNI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 +++ + L GDS DNIPG PG+G KTA L+ E+ ++EN+L + R+K + + Sbjct: 175 QSTAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLIAEFDSIENLLEHTDRLKGALKTK-- 232 Query: 234 LEYAETAR----LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 ET R S+ L ++ DVPIT+ + L+ E+ + +L + LEF LI+RV Sbjct: 233 ---VETNREMIIFSKFLATIKIDVPITLDMNALVREEPDEEKLRKIFEELEFRTLIDRV 288 >gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1] gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1] Length = 937 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 236/615 (38%), Positives = 364/615 (59%), Gaps = 28/615 (4%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 YT I++ + +W+ K+E + TD++D ++ + I+ S E Sbjct: 341 YTTILSEAQLDEWLAKIEAAELTALDTETDSLDEMVARIVGISFSVA--------VGEAA 392 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF- 486 +I L H D + L K +L+ L+ + E+ K+G ++KYD+ V +GI++RG+ Sbjct: 393 YIPLR-HEGMDVPEQLDLDK-VLARLRPWLEDASRKKLGQHVKYDQHVFANHGITVRGYA 450 Query: 487 EDIMLMSYVLDSGRSSHDIASIA-----QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541 D ML SYVL++ R H++ S+A + +SY +++ KS IP ++ + + Sbjct: 451 HDTMLQSYVLEADRP-HNLTSLALRHVNRSGISY--EDLCGKGKSQIPFAQVPVDKAAAY 507 Query: 542 AIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 + E+S+ L + L P++ V LLH+YE L+ + + ++E G+ ID L + S Sbjct: 508 SCEDSDQTLDVHNTLWPRIQVHAGLLHIYE-LEMQTSEALFRIERNGVSIDAGELARQSN 566 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 ++ +L LEE Y+++G+ FNLSSPKQLG+I F KL P KT TG T + LE++ Sbjct: 567 DLGARILKLEEEAYEIAGQPFNLSSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKL 626 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 D P+ +LE R LSK+K TY D L RVHT Y+ A +TGRL+S +PNL Sbjct: 627 -AEDYPLPAKLLEHRSLSKLKGTYTDKLAQMALPSDGRVHTHYAQAVAVTGRLSSNDPNL 685 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIP++T G+++R AF++P K + SADYSQIELRI+AH++ L F+N LD+HR Sbjct: 686 QNIPVRTPEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKNGLDVHRA 745 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 AAE+FGV++++VS + RR+AK INF +IYG+S F LA L I AA YI +YF R+P Sbjct: 746 TAAEVFGVSVDEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYIDKYFQRYP 805 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 G+ Y+++T GYVET+FGRR+ EIN + ERAAINAP+QG+AAD+ Sbjct: 806 GVKRYMDQTVELAHAQGYVETVFGRRLVLPEINGGNGPRKKAAERAAINAPMQGTAADLI 865 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI-NLR 959 ++AM++V L+ K +++Q+HDELVFE+PE A++ V + A + + +L Sbjct: 866 KKAMVAVQARLDAEKPEVLVIMQVHDELVFELPE-----AARDWVQAEIPAIMAGVADLS 920 Query: 960 VPLKVNIKVSNNWQE 974 VPL I ++W++ Sbjct: 921 VPLLAEIGFGSSWEK 935 Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 103/293 (35%), Positives = 163/293 (55%), Gaps = 10/293 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L LVDGSS++YRA++A P L R G P + G + ++Q RK+ A + Sbjct: 1 MSNSKTLVLVDGSSYLYRAYHAMPDL-RAIPGDPASPATGAIRGMVNMMQALRKDVQADY 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 +FD TFR+E+Y +YKA R +P+ L Q+ + G + + G EADD+ Sbjct: 60 AVCVFDASGPTFRDEMYTEYKATRSPMPDDLRSQIEPIHEVVAMLGWKVVAVPGVEADDV 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IAT A +G V + S DKDL QLV+ + DT+ +K D+ V ++G+PP M+ Sbjct: 120 IATLAQTAAAQGIQVIVSSGDKDLSQLVNEHVTIIDTMNGKKRDVAGVTAEFGVPPALMI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 QAL GD++DN+PG+ +G KTAA L+E+G L+N++ NA+ IK +N+ + + Sbjct: 180 DYQALVGDTVDNVPGVTKVGPKTAAKWLEEFGTLDNLIANAAGIKGVA-GQNLRDAIASG 238 Query: 241 R--LSRKLVMLRTDVPIT-----IP-LEHLILEDCNGPRLISFLKALEFTKLI 285 + LSR+LV ++TD ++ +P L+ + L + + L F + F L+ Sbjct: 239 QLALSRQLVTMKTDCDLSAYIGGLPQLDAVTLAEPDSAALAPFYEKYGFKGLV 291 >gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184] gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184] Length = 920 Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust. Identities = 244/612 (39%), Positives = 359/612 (58%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I + W K++ +F T +D ++ + ++ S K Sbjct: 323 YETIQTWEQFDAWFAKIDAAALTAFDTETTALDPMLARLVGLSFSVEPGK--------AA 374 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ ++ H D + L E+L+ LK + E+ K+G ++KYD VL Y I++ G E Sbjct: 375 YLPVA-HRGPDMPEQLPL-DEVLARLKPWLESADRKKVGQHLKYDAQVLANYDIALNGIE 432 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYV++S R+ HD+ S+A + L +++ I D+++ +Q E+A Sbjct: 433 HDTLLESYVVESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAA 491 Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID L S EI Sbjct: 492 EDADITLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEI 551 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y+L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 552 ATRLIELEGEAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 610 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 611 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQN 670 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+ P +++SADYSQIELRI+AHI+ L + F DIHR A Sbjct: 671 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATA 730 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 731 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGV 790 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y+E T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 791 AQYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 850 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V L +LA++M++Q+HDELV EVPE E++ + + M L+VPL Sbjct: 851 SMIAVDDWLTRDRLASRMIMQVHDELVLEVPEGELSLVREKLPEMMCGVA----KLKVPL 906 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 907 VAEVGAGANWEE 918 Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 102/256 (39%), Positives = 152/256 (59%), Gaps = 6/256 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 15 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 69 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKANRP +P L Q+ + A +A G P + ++G EADD+I T Sbjct: 70 AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 129 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + VI K+G+PPE+++ AL Sbjct: 130 EAERHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 189 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y L+ ++ +A+ IK +N+ + L R+L Sbjct: 190 GDTVDNVPGVEKCGPKTAVKWLTQYDTLDGVIEHAADIKGVV-GDNLRRALDFLPLGRQL 248 Query: 247 VMLRTDVPITIPLEHL 262 V + T +T LE + Sbjct: 249 VTVDTSCDLTPHLESI 264 >gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054] gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424] gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3] gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054] gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424] gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3] Length = 917 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 244/612 (39%), Positives = 359/612 (58%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I + W K++ +F T +D ++ + ++ S K Sbjct: 320 YDTIQTWEQFDAWFAKIDAAALTAFDTETTALDPMLARLVGLSFSVEPGK--------AA 371 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ ++ H D + L E+L+ LK + E+ K+G ++KYD VL Y I++ G E Sbjct: 372 YLPVA-HRGPDMPEQLPL-DEVLARLKPWLESADRKKVGQHLKYDAQVLANYDIALNGIE 429 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYV++S R+ HD+ S+A + L +++ I D+++ +Q E+A Sbjct: 430 HDTLLESYVVESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAA 488 Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID L S EI Sbjct: 489 EDADITLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEI 548 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y+L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 549 ATRLIELEGEAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQN 667 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+ P +++SADYSQIELRI+AHI+ L + F DIHR A Sbjct: 668 IPVRTAEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATA 727 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGV 787 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y+E T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 788 AQYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V L +LA++M++Q+HDELV EVPE E++ + + M L+VPL Sbjct: 848 SMIAVDGWLTRDQLASRMIMQVHDELVLEVPEGELSLVREKLPEMMCGVA----KLKVPL 903 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 904 VAEVGAGANWEE 915 Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 102/256 (39%), Positives = 152/256 (59%), Gaps = 6/256 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKANRP +P L Q+ + A +A G P + ++G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + VI K+G+PPE+++ AL Sbjct: 127 EAERHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y L+ ++ +A+ IK +N+ + L R+L Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLTQYDTLDGVIEHAADIKGVV-GDNLRRALDFLPLGRQL 245 Query: 247 VMLRTDVPITIPLEHL 262 V + T +T LE + Sbjct: 246 VTVDTSCDLTPHLESI 261 >gi|332969120|gb|EGK08156.1| DNA-directed DNA polymerase I [Psychrobacter sp. 1501(2011)] Length = 1018 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 225/545 (41%), Positives = 341/545 (62%), Gaps = 27/545 (4%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM----RGFE-DIMLMSYVLDSGRSSH 503 +L+ LK EN KIG ++KYD VL +YGI + + +E D ML SYVL++ + H Sbjct: 480 VLTKLKPILENPEIGKIGQHLKYDAHVLRKYGIELNTSPKNWEMDTMLASYVLNAAATRH 539 Query: 504 DIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 + +A+ +L + + +++ + DK++ + ++A E++++ QL+ L + +L Sbjct: 540 SMDDLARHYLHTQTISFEDVAGKGAKQVTFDKVAINIASDYACEDADITYQLFELFQDRL 599 Query: 561 ----IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 + ++LLH L+ P+ ++ QME GI I + L ++S + ++ LE+ Y Sbjct: 600 KDDTVNQRLLH---ELEIPVAQILCQMESEGIMIKRSFLNELSERFDEEIIELEKQAYVE 656 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +GE+FNL SPKQLG++LF KL G KTK+GQ+ T L +I D+P+ + LE+R Sbjct: 657 AGEEFNLGSPKQLGEVLFDKLGVIGGKKTKSGQYSTGEAVLSKI---DHPLAEIALEYRS 713 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 L+K+K+TY D+L +K T RVHT Y A T TGRL+S +PNLQNIPI+T G+ IR+A Sbjct: 714 LAKLKNTYTDALDAVADKDTDRVHTSYHQALTSTGRLSSTDPNLQNIPIRTKTGRLIRQA 773 Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 FI+P + L++ADYSQIELR++AH + L + F LDIH AAE+ G ++++V+P Sbjct: 774 FIAPEGRVLLAADYSQIELRLMAHFSGDANLTKAFNEGLDIHTATAAEVLGKSVDEVTPT 833 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 RR+AK INF ++YG+S F LA QL++ R EA DYI +YF R+PG+ Y++ T++ Sbjct: 834 ERRNAKAINFGLLYGMSAFGLAKQLQMSRGEAQDYIDQYFKRYPGVRRYMQDTRDNAVDK 893 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GY+ETI GR+++ +INS +R ERAAINAP+QGSAAD+ + AMI+V K L K Sbjct: 894 GYIETILGRKLYTPDINSNNQMVRRGAERAAINAPLQGSAADLIKLAMIAVDKVLP--KQ 951 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSME-------KACLPKINLRVPLKVNIKVS 969 KMLLQ+HDELVFEV ++ ++I ++M+ K ++ VPL V V Sbjct: 952 NAKMLLQVHDELVFEVDSDKADEIGELIKNAMQNVLSDTAKDMGWDVDFAVPLLVETGVG 1011 Query: 970 NNWQE 974 +NW E Sbjct: 1012 DNWDE 1016 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 101/256 (39%), Positives = 148/256 (57%), Gaps = 5/256 (1%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS +++R ++A P GL NAI G N L K+++ +H AV FD Sbjct: 50 FILVDGSYYLFRTYHALPKTMMNSQGLTTNAIRGTLNALLKVMRRYN----PTHMAVCFD 105 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFR+ + +YKANRPK+ L Q+P + +A GIP + I+G EADDII T T+ Sbjct: 106 TKSPTFRHAMSEEYKANRPKMDPELAEQIPYIHRLVRALGIPLLRIEGAEADDIIGTLTH 165 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A +EG V I S DKD+MQL++ L D+ + +D++ V K+GI P +M+ L L Sbjct: 166 RAVQEGHHVVISSGDKDMMQLINDCVILEDSFVGKVVDVQGVEDKYGIKPNQMIDLLTLM 225 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I GIP +G KTA L +Y ++NI+ NA +IK K E ++E+A+ R+L Sbjct: 226 GDASDGIKGIPSVGQKTAVKWLNQYQTVDNIVANAHQIK-GKVGEKLVEFADNIPRDRQL 284 Query: 247 VMLRTDVPITIPLEHL 262 + T++ I E L Sbjct: 285 ATIVTNLEIGQDWEDL 300 >gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315] gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315] Length = 917 Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust. Identities = 244/612 (39%), Positives = 358/612 (58%), Gaps = 21/612 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I + W K++ +F T +D ++ + ++ S K Sbjct: 320 YDTIQTWEQFDAWFAKIDAAALTAFDTETTALDPMLARLVGLSFSVEPGK--------AA 371 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ ++ H D + L E+L+ LK + E+ K+G ++KYD VL Y I + G E Sbjct: 372 YLPVA-HRGPDMPEQLPL-DEVLTRLKPWLESADRKKVGQHLKYDAQVLANYDIELNGIE 429 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYV++S R+ HD+ S+A + L +++ I D+++ +Q E+A Sbjct: 430 HDTLLESYVVESHRT-HDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAA 488 Query: 544 ENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID L S EI Sbjct: 489 EDADITLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARLHAQSTEI 548 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y+L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 549 ATRLIELEGQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 607 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P+ K +LE R LSK+KSTY D LP +N T RVHT Y+ A +TGRLAS +PNLQN Sbjct: 608 EDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYAQAVAVTGRLASNDPNLQN 667 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++T G++IR AFI+ P +++SADYSQIELRI+AHI+ L + F DIHR A Sbjct: 668 IPVRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATA 727 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ Sbjct: 728 AEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGV 787 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y+E T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + Sbjct: 788 AQYMEDTRATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKL 847 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 +MI+V L +LA++M++Q+HDELV EVPE E++ + + M L+VPL Sbjct: 848 SMIAVDDWLTRDRLASRMIMQVHDELVLEVPEGELSLVREKLPEMMCGVA----KLKVPL 903 Query: 963 KVNIKVSNNWQE 974 + NW+E Sbjct: 904 VAEVGAGANWEE 915 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 102/256 (39%), Positives = 152/256 (59%), Gaps = 6/256 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 12 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y DYKANRP +P L Q+ + A +A G P + ++G EADD+I T Sbjct: 67 AKGKTFRDDLYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVEGVEADDVIGTLAR 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + VI K+G+PPE+++ AL Sbjct: 127 EAERHGMNVIVSTGDKDLAQLVTERVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +Y +L+ ++ +A+ IK +N+ + L RKL Sbjct: 187 GDTVDNVPGVEKCGPKTAVKWLSQYESLDGVIAHAADIKGVV-GDNLRRALDFLPLGRKL 245 Query: 247 VMLRTDVPITIPLEHL 262 V + T + LE + Sbjct: 246 VTVDTSCDLAPHLESI 261 >gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181] gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181] Length = 904 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 243/619 (39%), Positives = 368/619 (59%), Gaps = 25/619 (4%) Query: 363 INNDSYTKIVNTK-DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 IN Y +++NTK D+ W+ ++ S T++++ ++ + I++ + Sbjct: 302 INTKEY-QLINTKHDLALWINSIKEEKFFSIDTETNSLNTMKAELVGISLCINPGR---- 356 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 +I L ++S+ +L LK E+ K+G N+KYD + YGI Sbjct: 357 ----ACYIPL---CHKNSSVDQLSLAAVLEDLKPILEDSSIKKLGQNLKYDAHIFLNYGI 409 Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILKSRKSSIPIDKISDSQ 537 + G +D MLMSYV++S ++ H + ++ K+L + K ++ + + D++S Sbjct: 410 EINGISDDTMLMSYVIESNQN-HGMDKLSAKYLGHNCKSYESLVGKGVNQLTFDQVSVED 468 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +A E+++V LQL+L ++ L LL VY+ ++ P + + +E G+ ID +L Sbjct: 469 AVPYAAEDADVTLQLYLAMKETLDSNPSLLRVYKDIEIPAMKALIHIERNGVLIDPKILG 528 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 S I + LL LEE +DL+G+ FNLSSPKQL +ILF KL+ KT +G T+ + Sbjct: 529 DQSKVIGEKLLLLEEKAFDLAGQPFNLSSPKQLQEILFEKLEIKPLKKTPSGTPSTSEEV 588 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 L ++ + P+ K ILE+R L+K+KSTY D LP IN+ + RVHT Y+ A +TGRLAS Sbjct: 589 LSELAL-NYPLPKLILEYRSLAKLKSTYTDKLPKMINESSGRVHTSYNQAIAITGRLASS 647 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIPI+T G+K+R AFI+P K++SADYSQIELRI+AH++K L F+N+ D Sbjct: 648 DPNLQNIPIRTVEGRKVREAFIAPDGSKILSADYSQIELRIMAHLSKDKRLVAAFKNNED 707 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH + A EIF ++ VS + RR+AK INF +IYG+ + LA L I R+ A +YI+RYF Sbjct: 708 IHTITAGEIFNIDNSAVSSEQRRYAKVINFGLIYGMGVYGLAKNLNIERAAAQNYIERYF 767 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 ++P + EY+E TK R+NGYVET FGRR+ EIN R ERAAIN P+QG+A Sbjct: 768 SKYPSVREYMEDTKQDARKNGYVETHFGRRLWVPEINGSNGMQRAGAERAAINGPMQGTA 827 Query: 897 ADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AD+ + AM+ V L+ + L KM++Q+HDELVFEVP+ E+T + I ME Sbjct: 828 ADLIKMAMVGVKTWLDGQRHLKGKMIMQVHDELVFEVPDTEVTEFKENIKRIMENVA--- 884 Query: 956 INLRVPLKVNIKVSNNWQE 974 + VPL V++ NW++ Sbjct: 885 -QMDVPLIVDLGEGKNWEQ 902 Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 116/345 (33%), Positives = 184/345 (53%), Gaps = 16/345 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P R DG P I G NML +N K+ + + IFD Sbjct: 4 LLLVDGSSYLYRAFHAMPDF-RNKDGEPTGVIYGVLNML----RNIHKQYPSDYSVCIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFRN+IY +YKANRP +P+ L Q+ ++ A A G P + G EADD+I T T Sbjct: 59 AKGKTFRNDIYTEYKANRPSMPDDLACQIEPLKEAINAMGWPMLIESGVEADDVIGTLTQ 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A V I + DKDL QLV+ T L +T+ E +DI+ V K+G+PP+ ++ ++ Sbjct: 119 QANSHNIKVVISTGDKDLAQLVNEHTVLINTMTNELLDIDGVKNKFGVPPQLIIDYLSII 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENILEYAETARLSR 244 GD DN+PG+ +G KTA L+EYG+L++I+ NA + L + TA + Sbjct: 179 GDKADNVPGVEKVGPKTALKWLEEYGDLKSIIGNADKFTGVVGNNLRQALAWLPTA---K 235 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT-----TYDCDAANI 299 +L+ ++ DV I +D + L + + F+ + ++T + + ++ + Sbjct: 236 ELITIKCDVKINYSWSDFEKKDQDNIALSNLYQKYNFSSWLRDMSTQIEHSSEEHNSPLV 295 Query: 300 EPVVLDINTTENKGIAIETEID-RDTTIKTSQFSSLSDQTSKINS 343 P INT E + I + ++ +IK +F S+ +T+ +N+ Sbjct: 296 NPKADFINTKEYQLINTKHDLALWINSIKEEKFFSIDTETNSLNT 340 >gi|300741418|ref|ZP_07071439.1| DNA polymerase I [Rothia dentocariosa M567] gi|300380603|gb|EFJ77165.1| DNA polymerase I [Rothia dentocariosa M567] Length = 955 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 305/996 (30%), Positives = 487/996 (48%), Gaps = 105/996 (10%) Query: 29 KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88 + DG A+ F + L ++ K+ SH AV FD P TFR E Y +YK+ R IP Sbjct: 12 RSDGQHTEAVHAFLSTLLNII----KDHNPSHIAVAFDLPGGTFRTEEYSEYKSGRNVIP 67 Query: 89 EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV 148 E QL L++ A IPA+ + +EADDI+AT T + + V I+S D+D+ QLV Sbjct: 68 EAFDGQLDLIKKMLGALKIPALTQENYEADDIVATLTRQGSEAQYKVLILSGDRDIFQLV 127 Query: 149 SP-TTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYK 202 + T LY +++D V KK +PP L ALTG+ DN+PG+PG+G Sbjct: 128 TDDVTLLYPVTTGPSKGIQRMDPAAVEKKTKVPPRLYPDLAALTGEQADNLPGVPGVGPG 187 Query: 203 TAALLLQEYGNLENILINASRIKQKKR---RENILEYAETARLSRKLVMLRTDVPITIPL 259 AA L EYG+LE +L+N+ IK KK RENI E R +R+L L + + + Sbjct: 188 FAAKWLHEYGDLEGVLVNSENIKGKKGEALRENI----ENVRRNRRLNQLVDTLNLDVEF 243 Query: 260 EHL-ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIET 318 + + + D L +F +EF + R + PV+ + Sbjct: 244 DQMRFIPDLQ--ELEAFFDEVEFRTIRKRAQDI-------LGPVIRALGAQ--------- 285 Query: 319 EIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQ 378 ++T+ ++D P E PI D + + D + Sbjct: 286 -------VRTAGEEPMTDNG-------VPSGPTFE--------PIRTDEAITVTSAADFR 323 Query: 379 QWVQKLETIGSA------SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV----ETIF 428 W + +G + +I A P+ + T K+ E Sbjct: 324 SWCEHAAHVGYGHDASGNAIEIPERLKGAVTLFPVIDVPVAREGVKVTKTKIRAAEENPV 383 Query: 429 IDLSVHTSQDST---GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 + + TS++S+ +++++ S ++ + KI ++K + +L YG + G Sbjct: 384 LRGIILTSKESSLWINLTNISEDLASAFAEWVSDPQMRKIVMDLKNQRKLLREYGYKLDG 443 Query: 486 -FEDIMLMSYVLD----SGRS--SHDIASIAQKWLSYTRKEI--LKSRKSSIPIDKISDS 536 ED L SY+ + R + I +A+K+L ++E L + ++ + ++ Sbjct: 444 AIEDPSLSSYMCGYIAAANRRLFAERIEDLAEKYLWIPQQEFSELVFPEEALSLFEMPGE 503 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 + + + S VI +L +L ++ + L +YE ++ P++ V++ ME GI + LL Sbjct: 504 ENLRYFTQVSRVIHELARILHFEMQEQGQLKIYEDIELPLLYVLADMEQAGIAVSDALLN 563 Query: 597 QVSAEISKNLLSLEENIY-----DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +++ S EE D++GE NL+S KQL +LF +L P K K+G + Sbjct: 564 ELNDTFSSRASMAEEQAKVLIGGDVNGEPLNLASVKQLQTVLFERLGLPKTRKIKSG-YS 622 Query: 652 TTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 T ++ + + +P + + +R K+K T + RVHT + Sbjct: 623 TDSESVADLLTKVSPESDGAQFLIALQAYRDNIKLKQTVEGLQKAAVTD--GRVHTTFQQ 680 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-------KKLISADYSQIELRIL 758 + TGRL+S PNLQNIPI+TD G++IR AFI P + L++ADYSQIE+RI+ Sbjct: 681 NAASTGRLSSTAPNLQNIPIRTDEGRRIRGAFIVAPKVLDGVEYEGLLTADYSQIEMRIM 740 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 H+A L Q + + D+HR V +E+FGV E+V+PQMR K +++ + YG+S F LA Sbjct: 741 VHLAADEKLIQAYADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAYGLSRFGLA 800 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL I EA + YF RF + ++ +GY ETI+GRR +++SP + Sbjct: 801 KQLNISSDEAGELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGRRRSLPDLDSPNRT 860 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 R ERAA+NAPIQG+AADI + AMI++H+ L++ KL T+MLLQ+HDE++ EV E Sbjct: 861 RREAAERAALNAPIQGTAADIIKIAMINIHRRLQEEKLKTRMLLQVHDEIILEVAVGERE 920 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 A +I+V M +A I L+VPL V + +W+E Sbjct: 921 AAQRILVEEMSEA----IELKVPLDVQVGWGKSWEE 952 >gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] Length = 990 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 332/1034 (32%), Positives = 507/1034 (49%), Gaps = 124/1034 (11%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L L+DG S +R+FYA LS K DG+P + GF K L + K + Sbjct: 13 LLLIDGHSLAFRSFYAFSKGGEGGLSTK-DGVPTSVTYGFL----KALLDHCKGLEPNGL 67 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR++ YKA+R + PE L L + ++ IP G+EADD+ Sbjct: 68 VVAFDTDVPTFRHDADAAYKAHRDEAPEAFFQDLANLQTILRESLDIPLCMAPGYEADDV 127 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170 + T A G+ V I+S D+DL QLV + LY ++ E V+ Sbjct: 128 LGTLANRAADAGWRVRILSGDRDLFQLVDDSRDIAVLYMGGGPYAKNSGPVEVRREGVVS 187 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--- 227 K G+ PE++V L+ALTGDS DNIPG+ G+G KTA LL Y +L+ I +++ Sbjct: 188 KLGVTPEEVVDLKALTGDSSDNIPGVRGVGPKTAINLLAAYEHLDGIYAALEALERSGPK 247 Query: 228 -KRRENILEYAETARL---------SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277 K + +L+ A +L SR L + ++P+ L L + L S L Sbjct: 248 AKDPKGVLKGALVGKLKDDRDNAFRSRMLAEILVNIPLP-EAPRLELGRVDREALRSSLD 306 Query: 278 ALEFTKL---INRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL 334 LE L ++R A + DA + T + A+ E L Sbjct: 307 ELELASLARQVDRFAALFSADAGAAD------ATISQEAKAVAEEGALAAPAAAGGPPDL 360 Query: 335 SDQTSKINSEQTPQKL--FLERLQKLSQ--YPINNDSYTKIVNTKDIQQWVQKLETIGSA 390 Q +P+ L ++RL + P+ D+ T +N + +L +G A Sbjct: 361 QPQVI-----LSPEALAALVQRLLGCTDPAAPVALDTETTALNP-----FQAELVGLGVA 410 Query: 391 SFKIITDT--MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE 448 + +T+ + H P+A DD + T L + E Sbjct: 411 WGEGLTELAYIPIGHQPPVA---------DDLLSETPTPPRQLPL-------------DE 448 Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIAS 507 +L+ L + + K N KYD+L+L R+G+ + G D +L Y+ D+ + H + Sbjct: 449 VLTALAPWLASAEHPKALQNAKYDRLILLRHGLPLGGVVMDTLLADYLRDA-NAKHGLEV 507 Query: 508 IAQKWLSYTR---KEILKSRKS--SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-- 560 +AQ+ L +T E++ S ++P++ + + + +V +L LLR +L Sbjct: 508 LAQRNLGFTPTSYGELVPKGASFAAVPVEAAA-----LYCGMDVHVTRRLSPLLRRQLEE 562 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 + L + + ++ P+ V++QME TGI+ID L+++S E+ L LE +G + Sbjct: 563 LGPSLPALLDGVELPLEPVLAQMEATGIRIDTAYLQELSEELGATLARLEAEARAAAGVE 622 Query: 621 FNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 FNL+SPKQLG++LF L +TKTG W T A LE++ D+P++ +LE R LS Sbjct: 623 FNLASPKQLGELLFDTLGLDRKKSRRTKTG-WSTDANVLEKLE-DDHPVVPLVLEHRTLS 680 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 K+KSTY D+LP+ + T RVHT ++ A T TGRL+S PNLQNIPI+T+ ++IR+AF+ Sbjct: 681 KLKSTYVDALPSLMEPETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFL 740 Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 LISADYSQIELRIL H+ L + + N D+H + A + + E V+P R Sbjct: 741 PQEGWSLISADYSQIELRILTHLCGEEVLVEAYRNGDDVHALTARLLL--DKEAVTPDER 798 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 R KTINF +IYG+ R A + + +S+A D++ RY R+P + ++E + GY Sbjct: 799 RLGKTINFGVIYGMGAQRFARETGVSQSQAKDFLSRYKQRYPKVFAFLELQERLALSRGY 858 Query: 859 VETIFGRR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADIT 900 VETI GRR +D EI+ + + + RAA NAPIQGS+ADI Sbjct: 859 VETILGRRRPFAFDPSGLGRHLGKDPMEIDLEVARRGGLEAQQLRAAANAPIQGSSADII 918 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 + AM+ + ++L L ++LLQ+HDELV E E + + +ME+A + L V Sbjct: 919 KLAMVHLQQALSQQALPARLLLQVHDELVLEAAPEALDQVCDLTRQTMERA----VQLTV 974 Query: 961 PLKVNIKVSNNWQE 974 PL V V NW E Sbjct: 975 PLVVETGVGPNWME 988 >gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15] Length = 868 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 241/618 (38%), Positives = 361/618 (58%), Gaps = 32/618 (5%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV--- 424 Y+ I + K++ QW+++L +F T ++ ++ + + SF V Sbjct: 270 YSIITDQKELDQWLERLGAAELFAFDTETTSLRYMDAEIVGV-----------SFAVKPG 318 Query: 425 ETIFIDLSVHTSQDSTG--KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 E ++ L D G + ++L LK EN K+G N+KYDK VL +GI+ Sbjct: 319 EAAYVPLG----HDYMGAPEQLDRDQVLDQLKPLLENPDLAKVGQNLKYDKNVLANHGIT 374 Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQV 538 + G ED ML SYVL+S + HD+ S+A +L + + + I + ++I + Sbjct: 375 LEGIAEDTMLESYVLNSVATRHDMDSLAMYYLGEKTTSFESIAGKGAKQLTFNQIDLEKA 434 Query: 539 QEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ L+L LRPKL KL VYE +D P++ V+S+ME G I L+Q Sbjct: 435 APYAAEDADITLRLHQTLRPKLKETGKLAAVYEDIDLPLVPVLSRMEQRGTLISASTLRQ 494 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E+++ + LE+ ++++GE FNL S KQL I + K+ P K + + + ++ Sbjct: 495 HSQELAERMAELEKEAHEVAGETFNLGSTKQLQAIFYDKMGLPVIKKPQRARRQQRSRCF 554 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 N N + ILE R LSK+KSTY D+LP I+ RT RVHT Y A T TGRL+S E Sbjct: 555 R--NSPTNTNCRVILEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATGRLSSSE 612 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+++ G++IR+AFI+P KL++ADYSQIELRI+AH++ L + FE DI Sbjct: 613 PNLQNIPIRSEQGRRIRQAFIAPEGYKLVAADYSQIELRIMAHLSGDKGLLKAFEKGEDI 672 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H+ A+E+FGV+++ VS RR AK INF +IYG+S F L+ QL + R A +YI RYF Sbjct: 673 HKATASEVFGVSLDDVSSDQRRSAKAINFGLIYGMSAFGLSRQLDVERKLAQEYIDRYFE 732 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ +Y++ + +G+VET+FGRR++ EIN+ ++ ER AINAP+QG+AA Sbjct: 733 RYPGVLKYMDNIRKQAHDDGFVETLFGRRLYLPEINARNKQLQQAAERTAINAPMQGTAA 792 Query: 898 DITRRAMISVHK-SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 DI +RAM+ V L++H +M +Q+HDEL+ EV E +A I +EK Sbjct: 793 DIIKRAMVDVENWLLKEHADEARMTMQVHDELILEVKE----SALDKIRSGLEKRMSAAA 848 Query: 957 NLRVPLKVNIKVSNNWQE 974 L VPL V V +NW E Sbjct: 849 ELDVPLLVEAGVGDNWDE 866 Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 91/238 (38%), Positives = 139/238 (58%), Gaps = 1/238 (0%) Query: 48 LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107 +L+ ++ S V+FD TFR+++Y +YKANRP +PE L Q+ + +A G+ Sbjct: 4 MLRRLEQDFPGSKMVVVFDAKGKTFRHDLYEEYKANRPPMPEDLACQIEPIHEIVKAMGL 63 Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167 P + + G EADD+I T A +G V + + DKD+ QLVS L +T+ E ++D + Sbjct: 64 PLLTVTGVEADDVIGTLANEATSKGIDVVVSTGDKDMAQLVSDHVTLINTMTETRMDRDG 123 Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 V++K+G+ PE++V AL GD +DNIPG+ G KTA LQ Y NL+N++ +A IK Sbjct: 124 VVEKFGVTPEQIVDYLALVGDKVDNIPGVNKCGPKTAVKWLQSYDNLDNVIEHADEIK-G 182 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 K E + + ET LSR+L +RTDV + LE L L + + +L+ + EF I Sbjct: 183 KIGEYLRDATETLPLSRELATIRTDVELDFGLEDLKLREQDDQQLLELFREYEFRSWI 240 >gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7] gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7] Length = 922 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 243/618 (39%), Positives = 360/618 (58%), Gaps = 31/618 (5%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET- 426 Y I+ + +W+ KL+ + T ++D ++ + + SF VE Sbjct: 323 YDTILTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAELVGL-----------SFAVEAG 371 Query: 427 --IFIDLSVHTSQDSTGK-NTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 ++ L+ D G L K+ L L+ E+ K+G N+KYD VL GI Sbjct: 372 KAAYLPLA----HDYVGAPQQLDKQTALEKLRPILEDAKLKKVGQNLKYDISVLANAGIQ 427 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538 ++G D ML SYV +S S HD+ +A K+L + ++I + ++I Sbjct: 428 LKGVVFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAFEDIAGKGAKQLTFNQIPLETA 487 Query: 539 QEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E++++ L+L L P+L E +L V+ ++ P+I ++S +E G+ ID LL Q Sbjct: 488 APYAAEDADITLRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQ 547 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S E+++ + LE YD++GEKFNLSSPKQL + F KL +P KT G T + L Sbjct: 548 QSDELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAPSTAEEVL 607 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 ++ D P+ K ILE R L+K+KSTY D LP +N +T RVHT Y A+ TGRL+S E Sbjct: 608 VELAL-DFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATGRLSSSE 666 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+T+ G++IR+AFI+P +K+++ADYSQIELRI+AH+++ L + F DI Sbjct: 667 PNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDI 726 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AAE+FG + + V+ + RR AK +NF +IYG+S F LA QL IPR+EA YI YF Sbjct: 727 HRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTYIDTYFA 786 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+PG+ Y+E+T+ + GYV T+FGRR++ EI + R ERAAINAP+QG+AA Sbjct: 787 RYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAPMQGTAA 846 Query: 898 DITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 DI ++AMIS+ ++ D + M++Q+HDELVFEV ++ T + M KA Sbjct: 847 DIIKKAMISIADWIKTDTQGEITMIMQVHDELVFEVDADKAETLKLKVCELMAKAA---- 902 Query: 957 NLRVPLKVNIKVSNNWQE 974 NL V L + +NW + Sbjct: 903 NLDVELLAEAGIGDNWDQ 920 Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 111/291 (38%), Positives = 164/291 (56%), Gaps = 13/291 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRA+YA P L+ G A+ G NML LL SR + SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVVNMLRSLL--SRYQP--SHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRN++Y +YKA+RP +P+ L Q+ PL R+ +A G+P I I G EADD+I T Sbjct: 62 FDAKGKTFRNDLYEEYKAHRPPMPDDLRSQIEPLHRI-IRALGLPLISIPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +E AV I + DKD+ QLV L +T+ + + E V K+G+ P++++ Sbjct: 121 IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GD DNIPG+PG+G KTA +L G++ N+L ++ + K I++ A Sbjct: 181 ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVTELGFRGAKTMAAKIIDNA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + +LS +L ++TDV + L + + LI +EF + + V Sbjct: 241 DMLKLSYELATIKTDVELEQDWHELEAKPADRDELIKCYGEMEFKRWLAEV 291 >gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803] gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803] Length = 996 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 321/1030 (31%), Positives = 512/1030 (49%), Gaps = 107/1030 (10%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L LVDG S +R+FYA L+ K DG P + GF L + + E +A Sbjct: 10 LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGRPTSVTYGFLKALLDNSKGLKPEGVA--- 65 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120 + FD TFR++ +YKA+R PE+ L L + + +P G+EADD+ Sbjct: 66 -IAFDTAEPTFRHQADANYKAHRDVAPEVFFQDLDQLQTILRERLKLPLCLAPGYEADDV 124 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170 + T A G+ V I+S D+DL QLV LY + I+ V+ Sbjct: 125 LGTLANRAAGSGWRVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKSSGPTLINEAGVVA 184 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL----------IN 220 K G+ P K+V L+ALTGDS DNIPG+ G+G KTA LL+E +L+ + Sbjct: 185 KLGVMPNKVVDLKALTGDSSDNIPGVKGVGPKTAINLLKENNDLDGVYRVLEEVEAEGPK 244 Query: 221 ASRIKQKKRRENILEY-AETARLSRKLVMLRTDVPITIPLEHLI-LEDCNGPRLISFLKA 278 ASR K + L + A LSR L + D+P+ P E ++ L +G L L+ Sbjct: 245 ASRGAVKGALKGKLSADRDNAYLSRHLAEILVDIPL--PEEPVLELGPVDGEGLEEQLQD 302 Query: 279 LEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338 LE L+ ++ + + T + G+ + + T K ++ + Sbjct: 303 LELNSLVRQIPSF--------------VATFSSGGLTANAHLLEEATAKKAKGAP----- 343 Query: 339 SKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKD-IQQWVQKLETIGSASFKIITD 397 SK ++ + ++ + ++V+T++ +Q +Q+L + S + D Sbjct: 344 SKAGVAESGEAGTDPAATGVTSPSTRPELAPQVVSTREQLQSLMQQLMGCTNPSEPVAVD 403 Query: 398 T----MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL 453 T ++ F ++ + I + D ++ I + HT D + +L L Sbjct: 404 TETTDLNPFKAQLVGIGVCWGAGLSDLAY------IPVG-HT--DPALTQLPLEVVLEQL 454 Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW 512 + + K N KYD+L+L R+G+ + G D +L Y+ D+ + H + +A++ Sbjct: 455 APWLSSPSHPKALQNAKYDRLILLRHGLVLGGVVMDTLLADYLRDAA-AKHSLDGMAERD 513 Query: 513 LSYTRKEI------LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--EK 564 T K K+S + SD Q + + ++ +L + LR +L E+ Sbjct: 514 YGITPTLFSDLVGKAKDGKASCFAEVPSD-QAALYCAMDVHLTRRLAIDLRQQLQASGEQ 572 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L ++ ++++ P+ V++ ME TGI+ID L +S E+ + L LE + +G FNL+ Sbjct: 573 LTNLLDQVELPLEPVLALMEATGIRIDLSYLDTLSKEMGETLTRLEADAKQAAGVDFNLA 632 Query: 625 SPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 SPKQLG++LF L +TKTG + T A L+++ D+P++ +LE R LSK+KS Sbjct: 633 SPKQLGELLFETLGLDRKKSRRTKTG-YSTDATVLDKL-ADDHPVVPLVLEHRVLSKLKS 690 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D+LP + T RVHT ++ A T TGRL+S PNLQNIP++T+ ++IR+AF+ Sbjct: 691 TYVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEH 750 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 L+SADYSQIELRIL H++ L Q + + D+H + A + + VS RR K Sbjct: 751 WTLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLL--EKDDVSADERRLGK 808 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 TINF +IYG+ R A + + +++A +++ +Y R+P + ++E + GYVETI Sbjct: 809 TINFGVIYGMGAQRFARETGVSQTDAKEFLSKYRERYPKVFAFLELQERLALSRGYVETI 868 Query: 863 FGRR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADITRRAM 904 GRR H+D EI+ + + + RAA NAPIQGS+ADI + AM Sbjct: 869 MGRRRPFHFDRNGLGRLLGKDPFEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKLAM 928 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 I + +L+ H L ++LLQ+HDELV EV + ++V +MEKA + L VPL Sbjct: 929 IQLQAALQQHSLPARLLLQVHDELVLEVEPSALDDVKALVVSTMEKA----VELSVPLVA 984 Query: 965 NIKVSNNWQE 974 V +NW E Sbjct: 985 ETGVGSNWME 994 >gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231] gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231] Length = 898 Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust. Identities = 233/620 (37%), Positives = 362/620 (58%), Gaps = 32/620 (5%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE-- 425 Y ++ +QQW+Q+L +F + T +++ ++ + + SF VE Sbjct: 300 YETVLEEAGLQQWLQRLAGAEVFAFDLETTSLNYMDAEIVGL-----------SFAVEPA 348 Query: 426 -TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 ++ ++ H Q +L L+ E+ K+G N+KYD VL Y I++R Sbjct: 349 RAAYVPVA-HIGQ-GVSPQLERGHVLEQLRPLLEDPRRAKLGQNLKYDMSVLAHYDIALR 406 Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQE 540 G D ML SY+LDS + HD+ S+A K+L + +++ + D+++ + E Sbjct: 407 GVRFDTMLESYILDSTATRHDMDSLALKYLGHRTIKFEDVAGKGAKQLTFDQVAIERATE 466 Query: 541 HAIENSNVILQLWLLLRPKL----IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +A E++++ L+L +L PKL E++ H E P++ V+S+ME TG+ + ++LL Sbjct: 467 YAAEDADIALRLHRVLYPKLRQLPGPERVFHAIE---MPLLPVLSRMERTGVLVSRELLA 523 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 SAE+++ L +E ++Y +G +FNL SPKQ+ +L+ + P AKT G +TA+ Sbjct: 524 AQSAELAQRLAEIEASVYRAAGCEFNLGSPKQIQAVLYDRQGLPVLAKTPKGA-PSTAES 582 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + Q P+ + ILE R L+K+KSTY D LP I+ RT RVHT Y A TGRL+S Sbjct: 583 VLQELAATYPLPRMILEHRALAKLKSTYTDKLPLLIHPRTGRVHTSYRQAVAATGRLSSS 642 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP+++ G++IRR FI+ +L++ DYSQ+ELRI+AH + L++ F D Sbjct: 643 DPNLQNIPVRSPEGRRIRRGFIARQGYRLLAVDYSQVELRIMAHFSGDERLHRAFAAGED 702 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IHR AAE+F +E+V+ + RR AK INF +IYG+S + LA QL I R A Y++RYF Sbjct: 703 IHRATAAEVFATALEQVTAEQRRAAKAINFGLIYGMSAYGLARQLGIERDAAQHYVERYF 762 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+PG+ ++E+ + R+ YVET+FGRR++ EIN+ + R ER AINAP+QGSA Sbjct: 763 ERYPGVKAFMERIRREARERQYVETVFGRRLYLPEINASNAQRRQAAERTAINAPMQGSA 822 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI +RAM+ V + L+ + M+LQ+HDELVFEVP ++ ++ I M A Sbjct: 823 ADIIKRAMVRVDQWLQSEREDVFMVLQVHDELVFEVPTPDVQAVAERIRAFMVGAA---- 878 Query: 957 NLRVPLKVNIKVSNNWQEEN 976 L VPL V +NW+E + Sbjct: 879 ELSVPLTVEAGWGDNWEEAH 898 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 107/252 (42%), Positives = 151/252 (59%), Gaps = 8/252 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA+YA P L+ G P A+ G +ML KLL E ++F V+FD Sbjct: 8 LILVDGSSYLYRAYYALPPLTTPA-GEPTGAVYGVVSMLRKLL----AEYDTAYFGVVFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 TFR+E++ YKANR +P+ L QL PL R+ A G+ IEI+G EADD+I T Sbjct: 63 AKGKTFRDELFEAYKANRAPMPDELRVQLEPLKRIVC-ALGLSRIEIEGVEADDVIGTLA 121 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A G I + DKD+ Q+V+ L +T+ +D V K+G+PPE+MV AL Sbjct: 122 VRASVAGLRTIIATGDKDMAQIVNDNVVLLNTMSGTWLDAAAVQDKFGVPPERMVDYLAL 181 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GD++DNIPG+P +G KTAA L +YG+L+ +L IK K E++ E+ E LSR+ Sbjct: 182 VGDAVDNIPGVPRVGPKTAAKWLGQYGSLDALLECVDEIKGKV-GESLREHLEQLALSRE 240 Query: 246 LVMLRTDVPITI 257 L +R D+ + + Sbjct: 241 LATIRCDLDLDL 252 >gi|225351885|ref|ZP_03742908.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157132|gb|EEG70471.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 932 Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust. Identities = 289/984 (29%), Positives = 485/984 (49%), Gaps = 96/984 (9%) Query: 20 FYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYP 78 F+A P+ + G NA+ GF ML +++ + H AV FD TFRN + P Sbjct: 11 FFALPVENFSTSAGQATNAVWGFATMLSQVIDAEHPD----HLAVAFDVKGGTFRNTMLP 66 Query: 79 DYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTII 138 YK R PE LL QLPL++ A G+ IE G+E DD+I T + +K G+ ++ Sbjct: 67 QYKGTRDAAPEDLLTQLPLIQRMLTALGVTFIEKPGYEGDDVIGTLASMGDKAGYRTLVL 126 Query: 139 STDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVCLQALTGDSIDN 192 S D+D QL++ T LY D++H V++K+ + PE+ L AL G++ DN Sbjct: 127 SGDRDAFQLINDNITVLYP--GHHFKDLKHMTPDAVVEKYHVTPEQYPDLAALRGETADN 184 Query: 193 IPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYAETARLSRKLVML 249 IPG+PG+G AA + YG L+ I+ +A I KK R NI + +L+R + L Sbjct: 185 IPGVPGVGDGFAAKWINLYGGLDQIIEHADEIGGKKGEALRANI----DQVKLNRSVNAL 240 Query: 250 RTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAANIEPVVLDINT 308 D+ + + +E L + +L LEF + NRV T++ +PV D + Sbjct: 241 VRDLDLGVSIEDLTFGQVDANQLNQLFTRLEFGIRTKNRVLRTFNAGKPTNDPVQQDESG 300 Query: 309 --------TENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 T + A+E + + + L D+ +I + TP ++ ++ +Q Sbjct: 301 KLEIPQYETVDSPEALEAWVRDNLPMPNGH---LHDE-REIAPKTTPSGFAIDHTKQCAQ 356 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 ++ WV ++E M A H K AI T Sbjct: 357 SVAHS--------------WVLQVEGESKPGNAAYASLMIAAHDK----AIRT------- 391 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 N + +++ S L+ + H + H K +L G Sbjct: 392 ----------------------NRVDRDMASQLQTVLDEHHQSMVVHGYKEQSHLLESVG 429 Query: 481 ISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-YTRKEILKSRKSSIPIDKISDS-Q 537 +++ + D L Y++ + + A +L + ++ + + ++ D+ DS Q Sbjct: 430 VALPKPLFDTKLAGYLVHPDFHADTLEQAAAHFLDLHIEEQSEGATQGTLDFDEPDDSAQ 489 Query: 538 VQEHAIENSNVILQLWLL-LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 ++ + I+ L L L + + E ++ P+ V+ ME G Q+D + L Sbjct: 490 RNDNQLPRHTAIVGLLARKLADSLDQREQFSLLESVEIPVSRVLYGMEHAGAQVDMNRLM 549 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 + +++ + +E + +GE+ NL SPKQL ILF + KTKTG + T A Sbjct: 550 SMREQLAADANYAQETAWQYAGERVNLQSPKQLQKILFEDMGLKPTKKTKTGSYTTNAAA 609 Query: 657 LEQI---NCGDN---PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 L+ + +CG++ + +L R+ +K+K +L + N+ R+HT + T Sbjct: 610 LQVLRDRSCGNDRACQFLDALLLHREKNKLKQI-VQTLIDATNRSDGRIHTTFEQTVAAT 668 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQ 769 GRL+S++PNLQNIP + G++IR AF+ + L+S+DYSQ+ELRI+A ++ L + Sbjct: 669 GRLSSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIE 728 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F + D H+ VA+ ++GV +++++P R H K +++ + YG+S + L+ QL I EA Sbjct: 729 AFRSGRDFHKYVASLVYGVPVDEITPDQRSHVKAMSYGLAYGLSTYGLSQQLGIKPGEAE 788 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 ++YF F +HEY+E + R+ GY ETI+GRR ++ + SP ++R+ ERAA+N Sbjct: 789 SLKRQYFATFGKVHEYLESLVSSAREKGYTETIYGRRRYFPGLKSPNRAVRDAAERAALN 848 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 APIQGSAADI + AMI +L + LA++++LQIHDELV EV E + ++ +ME Sbjct: 849 APIQGSAADIMKIAMIRADDALREAGLASRIILQIHDELVVEVAPGEAERVTALVKDAME 908 Query: 950 KACLPKINLRVPLKVNIKVSNNWQ 973 A +++ VPL V+ + ++WQ Sbjct: 909 HA----VDMAVPLDVSTGIGSDWQ 928 >gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM 16992] gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM 16992] Length = 950 Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust. Identities = 290/990 (29%), Positives = 482/990 (48%), Gaps = 82/990 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P+ + G NA+ GF ML +++ + H AV F Sbjct: 16 LLVVDGHSLAFRAFFALPVENFSTSAGQATNAVWGFATMLSQVIDAEHPD----HLAVAF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRN + P YK R PE LL QLPL++ A G+ IE G+E DD+I T Sbjct: 72 DVKGGTFRNTMLPQYKGTRDAAPEDLLTQLPLIQQMLDALGVTFIEKPGYEGDDVIGTLA 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + ++ G+ ++S D+D QL++ T LY D++H V++K+ + PE+ Sbjct: 132 SMGDEAGYRTLVLSGDRDAFQLINNNITVLYP--GHHFKDLKHMTPDAVVEKYHVTPEQY 189 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236 L AL G++ DNIPG+PG+G AA + YG L+ I+ +A I KK R NI Sbjct: 190 PDLAALRGETADNIPGVPGVGDGFAAKWINLYGGLDQIIEHADEIGGKKGEALRANI--- 246 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCD 295 + +L+R + L D+ + + +E L + +L LEF + NRV T++ Sbjct: 247 -DQVKLNRSVNALVRDLDLGVSIEDLTFGQVDANQLNELFTKLEFGIRTKNRVLRTFNAG 305 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 V D ++ + EI TI + + + ++ N + T + L ER Sbjct: 306 KPTNNLVPQDESS--------KLEIPEYETIDSPE---ALESWAQSNLQTTNKHLHDERE 354 Query: 356 QKLSQYPINND-SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 P +TK WV ++E + M A K I I Sbjct: 355 TAPKTTPSGFAIDHTKKCAKSVAHSWVLQVEGESKPGNAAYSSLMIASQGKAIRI----- 409 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKL 474 N + +++ S L+ + H + H K Sbjct: 410 ----------------------------NHIDRDMASQLQTLLDEYHQSMVVHGYKEQSH 441 Query: 475 VLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-YTRKEILKSRKSSIPIDK 532 +L G+ + D L Y++ + + A +L + ++ + + ++ D+ Sbjct: 442 LLGSAGVKLPEPLFDTKLAGYLVHPDFHADTLEQAAAHFLDLHVEEQSESATQGTLDFDE 501 Query: 533 ISDS--QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 +S Q + ++ ++ L L L + + E ++ P+ V+ ME G Q+ Sbjct: 502 PEESVQQKDDQLPRHTAIVGLLARNLSNSLDQREQFALLESVEIPVSRVLYGMEHAGAQV 561 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D + L + +++ + +E + +G++ NL SPKQL ILF + KTKTG + Sbjct: 562 DMNRLMNMREQLASDANHAQETAWQYAGKRVNLQSPKQLQKILFEDMGLKPTKKTKTGSY 621 Query: 651 KTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 T A L+ + N + +L R+ +K+K +L + N R+HT + Sbjct: 622 TTNAAALQTLRDRSYDNDSACQFLDALLLHREKNKLKQI-VQTLIDATNGSDGRIHTTFE 680 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAK 763 TGRL+S++PNLQNIP + G++IR AF+ + L+S+DYSQ+ELRI+A ++ Sbjct: 681 QTVAATGRLSSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVELRIMADLSG 740 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L + F + D H+ VA+ ++GV +++++ R H K +++ + YG+S + L+ QL I Sbjct: 741 DEALIEAFRSGRDFHKYVASLVYGVPVDEITSDQRSHVKAMSYGLAYGLSTYGLSQQLGI 800 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 EA ++YF F +HEY+E + R+ GY ETI+GRR ++ + SP ++R+ Sbjct: 801 KPGEAESLKQQYFATFGKVHEYLESLVSTAREKGYTETIYGRRRYFPGLKSPNRAVRDAA 860 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ERAA+NAPIQGSAADI + AMI +L + LA++++LQIHDELV E+ E A+ + Sbjct: 861 ERAALNAPIQGSAADIMKIAMIRADDALHESGLASRIILQIHDELVVEIAPGEAEQATAL 920 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 + +ME A +++ VPL V+ + ++WQ Sbjct: 921 VKDAMEHA----VDMAVPLDVSTGIGSDWQ 946 >gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50] gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50] Length = 904 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 215/531 (40%), Positives = 331/531 (62%), Gaps = 11/531 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506 E+++ L+ + E+ K+ H+ KYD V G+S+ G ED ML +YVL+S R + Sbjct: 379 EVIARLRGWLEDAGRAKLLHHAKYDTHVFANEGVSLAGVAEDTMLQAYVLESHRGV-GLN 437 Query: 507 SIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 +AQ++L + +++ I D+++ + ++ E+S+ LQL +LRP++ + Sbjct: 438 DLAQRFLGRSGVNYEDLCGKGAKQIGFDEVAVALAGHYSCEDSDFTLQLHEVLRPRVAED 497 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 + L L+ + V++ +E G+++D L + S ++ + +L+LE+ Y+L+G+ FNL Sbjct: 498 EGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLALEQRAYELAGQPFNL 557 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 +SPKQLG+ILF ++ P KT G T + L ++ D P+ + +LE+R LSK+KST Sbjct: 558 NSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKL-AQDYPLPQVLLEYRGLSKLKST 616 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y D LP IN T RVHT YS A+ +TGRLAS +PNLQNIP++T+ G+++R AFI+ Sbjct: 617 YTDKLPRMINPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAE-QG 675 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 KL+SADYSQIELRI+AH++ L + F DIHR A+E+FGV + +V + RR AK Sbjct: 676 KLLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKA 735 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 INF +IYG+ F LA+ L I R A YI RYF R+PG+ Y++ T+ R GYVET+F Sbjct: 736 INFGLIYGMGVFGLASNLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVF 795 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 GRR+ +I + R ERAAINAP+QG+AAD+ + AM++V L+ +L T+M++Q Sbjct: 796 GRRLQLPDIRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLDAERLRTRMIMQ 855 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDELV EVP+EE+ ++ + M LRVPL + + NW++ Sbjct: 856 VHDELVLEVPDEELAAVAEALPRLMCDVA----TLRVPLVAEVGMGTNWEQ 902 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 98/250 (39%), Positives = 148/250 (59%), Gaps = 6/250 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R G P A+ G NML KL+Q+ + E + +FD Sbjct: 5 LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVQDHKAE----YAVCVFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++++PDYK++RP +PE L Q+ + A +A G P + I+G EADDII T Sbjct: 60 ARGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLAR 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A +G + + DKDL QLV P L +T+ E +D+ V K+G+PPE++V L Sbjct: 120 QASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNNKFGVPPERIVDYLMLV 179 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ +G KTA L E+G+++ ++ A +K N+ E L+R L Sbjct: 180 GDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVA-GNNLREAIPNFPLTRTL 238 Query: 247 VMLRTDVPIT 256 + ++ D +T Sbjct: 239 LTVKCDCDLT 248 >gi|224417856|ref|ZP_03655862.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] gi|253827195|ref|ZP_04870080.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491] gi|313141399|ref|ZP_07803592.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] gi|253510601|gb|EES89260.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491] gi|313130430|gb|EFR48047.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] Length = 896 Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust. Identities = 310/979 (31%), Positives = 514/979 (52%), Gaps = 101/979 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F++R+++A P L + H+G P + GF ++ +L ++ K+ + FA+ D Sbjct: 6 LTIIDTFGFLFRSYFALPPL-KNHEGFPTGLLTGFAKLIMQLHKDYPKDYLV--FAL--D 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR +I P YKANRP++P+ L QL + + G I I+GFEADD+IA+ Sbjct: 61 SKGENFRKQIDPLYKANRPEVPQDLKLQLEVAIRWVEDMGFKNISIEGFEADDVIASINK 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 K V IIS DKDL QL+ T L++ K+E+I E +K+G+ P + V Q++ Sbjct: 121 QVNKLDVNVRIISHDKDLYQLIDKDTFLFNPSKKEEIREEECKEKYGVYPSQFVDYQSIV 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DN+PG+ GIG K A LL +G+L++I + I QK+ RE + + A SR+L Sbjct: 181 GDSADNVPGVKGIGAKGAVNLLNNFGSLDSIYQHLDEIPQKRTRELLSAAKDDAYRSREL 240 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + L +LED + +C+ P++ + Sbjct: 241 ----------VKLRDDLLEDFD----------------------LSECEMPQDSPLLRIL 268 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQT-SKINSEQTPQ-KLFLERLQKLSQYPIN 364 ++ E D ++ +K + ++ + S+I S++ Q K F+ + + I+ Sbjct: 269 DSLR--------EYDLNSVLKKLHKNPITKKKISQIESQENEQEKKFIYK-----THLID 315 Query: 365 NDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV 424 NDS ++++ L SF T ++D +K + + S ++ D + Sbjct: 316 NDS--------KLKEFFSTLPKESIFSFDTETTSLDVRKAKIVGFSFS-VNGVDCYYIPI 366 Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISM 483 ++ + S + + +++ F++++ IGHN+KYD +L + + Sbjct: 367 AHNYLGVESQVSLECARE---------CIEQIFQSQYV--IGHNLKYDLEILKTNFDFVL 415 Query: 484 RGF---EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ- 539 F D ML++++L S + ++ + +K+ ++ E++ + + S+ +Q Sbjct: 416 EDFSKVRDSMLLAWLLQSD-TLCNLDFLMKKYFNH---EMIHYKDIVGKNENFSNILIQH 471 Query: 540 --EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E+A E++ QL+ LR L+ E LL + ++++ P I + ME++GI+ID + Sbjct: 472 ACEYASEDAAACYQLYFKLRG-LMDESLLEIAQKVEFPFIQSLMNMELSGIKIDLEYFLG 530 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 ++AE + L + E I+ L+ ++FNL+SP+QL ILF LK + KTK+G + T+ L Sbjct: 531 LNAETREKLHQISEEIFVLANKRFNLNSPQQLASILFDDLKLEASKKTKSG-YSTSELVL 589 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASL 716 + +PII ILE+R+ K+ STY + L H + R++T + T TGRL+S Sbjct: 590 NSL-YDSHPIIPKILEYRESFKLYSTYIEPLIEHAKSDLEHRIYTSFMQTGTSTGRLSSK 648 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQNIP+KT G++IR+ FI+ LIS DYSQIELR+LAH ++ + F D Sbjct: 649 NPNLQNIPVKTLEGRRIRKGFIAKENCLLISLDYSQIELRLLAHFSQDKAMIDAFLQDAD 708 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A +IFG E+++ + R AK+INF +IYG+ P +L+ L+I EA YI+ YF Sbjct: 709 IHLETAKKIFG---EEMAQEKRAVAKSINFGLIYGMGPKKLSETLKINFQEAKTYIQNYF 765 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP I ++++ + F+ +NGY +T+ GR +D + + R INA QGSA Sbjct: 766 TSFPMIKNFLKEQEEFILENGYSKTLLGRMRKFD-FEGVQEYQKAAFLREGINAIFQGSA 824 Query: 897 ADITRRAMISV-HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 ADI + AM + H SLE +K+LLQ+HDEL+FE P+E + ++ I ME Sbjct: 825 ADIIKMAMNKIMHSSLE-----SKLLLQVHDELIFEAPKEIASKEAKKIALIMENIA--- 876 Query: 956 INLRVPLKVNIKVSNNWQE 974 LRVPLK +I + NW E Sbjct: 877 -TLRVPLKCSISIGENWGE 894 >gi|183601492|ref|ZP_02962862.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019] gi|219683966|ref|YP_002470349.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011] gi|241191008|ref|YP_002968402.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196414|ref|YP_002969969.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219098|gb|EDT89739.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019] gi|219621616|gb|ACL29773.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011] gi|240249400|gb|ACS46340.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250968|gb|ACS47907.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793997|gb|ADG33532.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis V9] Length = 960 Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust. Identities = 294/989 (29%), Positives = 491/989 (49%), Gaps = 64/989 (6%) Query: 7 LFLVDGSSFIYRAFYATPL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L ++DG S +RAFYA P S K DG NA+ GF ML +++ + + + + V Sbjct: 12 LLVIDGHSLAFRAFYALPAENFSAK-DGQATNAVYGFFTMLSQVIASQKPDLLG----VA 66 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFRN++ YK R PE L+ Q+PL++ +AFG+ + QG+E DD+IAT Sbjct: 67 FDVKGGTFRNKMLTQYKGTREAAPEELISQIPLIQDMLEAFGVTYVTKQGYEGDDVIATL 126 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDT--VKEEKIDIEHVIK-KWGIPPEKMV 180 + E + ++S D+D QL+ T LY KE K ++ K+ + P + Sbjct: 127 ATMGEHADYRTYVLSGDRDAFQLIDDDITVLYPGYHFKELKAMTPQAVEDKYHVTPRQYP 186 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L AL G++ DNIPG+PG+G AA + +YG L+ ++ +A IK KK + + E E Sbjct: 187 DLAALRGETADNIPGVPGVGDGFAAKWINQYGGLDGVIEHADEIKGKKG-DALRESIEQI 245 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI-NRVATTYDCDAANI 299 RL+RK+ L D+ + + + L + + L F I +++ T++ Sbjct: 246 RLNRKVNALVRDLDLGVDIADLTFGKVDPAKAEELFNQLNFGARIRSKLLKTFNAGDPG- 304 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKL--FLERLQK 357 +PV + E E E D D + T + S+ Q ++ P L + ++ Sbjct: 305 QPVAKKASDAER--FEFEGEFD-DGSFDTPE--SVRVQEPVVDEIDAPASLEAWAQQHCP 359 Query: 358 LSQYPINNDSYTKIVNTKDIQ--QWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 ++ + + +V D Q Q V+ +E GS S + KP +IS L Sbjct: 360 IASGKSISSTTLDVVGEYDAQSQQCVEAVE--GSWSL------FASGSPKPGRSSISGLA 411 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH-NIKYDKL 474 D + +D H Q + + L EH +G N++ + Sbjct: 412 LMADG----HAVVVD--PHDEQYHMALQRILDTYAATLSVHGYKEHLHMLGAVNLRLPMV 465 Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534 + D L Y++D + A +L +E+ ++ + ++ I + Sbjct: 466 LF-----------DTNLAGYLIDPDFQGGSLQDCADHFLHRHAEEVTETEQGTLDI-GMD 513 Query: 535 DSQVQEH--AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 D + + + N+ ++ L L +L + ++ P + ME TG +D+ Sbjct: 514 DERAERDRKVVRNAAIVSLLARTLARQLEQRCQYSLLRDIELPTSVALFHMEHTGASVDR 573 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L ++ + +E+ Y+ +G + NL SPKQLG +LF ++ KTK G + T Sbjct: 574 ARLDELLEMFTDESNRMEQICYEAAGHEVNLQSPKQLGVVLFEEMGLNPTKKTKRGSYST 633 Query: 653 TAQDLEQINC----GDNP--IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 A+ L + G P + +L R+++K++ +L + IN R R+HT ++ Sbjct: 634 NAKALTTLYATSEEGSRPNEFLGALLRHREVNKLRQI-VQTLIDAINPRDGRIHTTFTQT 692 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKIT 765 TGRL+S++PNLQNIP + G+ IR AF+ L+SADYSQ+ELRI+A ++ Sbjct: 693 VAATGRLSSVDPNLQNIPNRNATGRDIRSAFVPGEGFADLLSADYSQVELRIMADLSGDE 752 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L + F++ D HR VA+ ++G+ +++V+P R H K +++ + YG+S + L+ QL IP Sbjct: 753 ALIKAFKSGADFHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAYGLSTYGLSQQLGIPS 812 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EAA RYF F +H+Y+E + R GY +T+FGRR ++ + S R+ ER Sbjct: 813 KEAAALRSRYFQTFGKVHDYLESLVSNARNTGYTQTMFGRRRYFPALTSANRVARDAAER 872 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 A+NAPIQG+AADI + AMI V ++L D L ++++LQIHDELV E+ E ++++ Sbjct: 873 GALNAPIQGTAADIMKIAMIRVDRALRDGNLNSRIVLQIHDELVVELAPGEEKRVTELVR 932 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +ME A +N+ VPL V+ V ++WQ+ Sbjct: 933 DAMEHA----VNIAVPLDVSTGVGSDWQQ 957 >gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822] gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis] Length = 904 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 215/531 (40%), Positives = 330/531 (62%), Gaps = 11/531 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506 E+++ L+ + E+ K+ H+ KYD V G+S+ G ED ML +YVL+S R + Sbjct: 379 EVIARLRGWLEDAGRAKLLHHAKYDTHVFANEGVSLAGVAEDTMLQAYVLESHRGV-GLN 437 Query: 507 SIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 +AQ++L + +++ I D+++ ++ E+S+ LQL +LRP++ + Sbjct: 438 DLAQRFLGRSGVNYEDLCGKGAKQIGFDEVAVPLAGHYSCEDSDFTLQLHEVLRPRVAED 497 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 + L L+ + V++ +E G+++D L + S ++ + +L+LE+ Y+L+G+ FNL Sbjct: 498 EGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLALEQRAYELAGQPFNL 557 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 +SPKQLG+ILF ++ P KT G T + L ++ D P+ + +LE+R LSK+KST Sbjct: 558 NSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKL-AQDYPLPQVLLEYRGLSKLKST 616 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y D LP IN T RVHT YS A+ +TGRLAS +PNLQNIP++T+ G+++R AFI+ Sbjct: 617 YTDKLPRMINPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAE-QG 675 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 KL+SADYSQIELRI+AH++ L + F DIHR A+E+FGV + +V + RR AK Sbjct: 676 KLLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKA 735 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 INF +IYG+ F LA+ L I R A YI RYF R+PG+ Y++ T+ R GYVET+F Sbjct: 736 INFGLIYGMGVFGLASNLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVF 795 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 GRR+ +I + R ERAAINAP+QG+AAD+ + AM++V L+ +L T+M++Q Sbjct: 796 GRRLQLPDIRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLDAERLRTRMIMQ 855 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDELV EVP+EE+ ++ + M LRVPL + + NW++ Sbjct: 856 VHDELVLEVPDEELAAVAEALPRLMCDVA----TLRVPLVAEVGMGTNWEQ 902 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 98/250 (39%), Positives = 148/250 (59%), Gaps = 6/250 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R G P A+ G NML KL+Q+ + E + +FD Sbjct: 5 LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVQDHKAE----YAVCVFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++++PDYK++RP +PE L Q+ + A +A G P + I+G EADDII T Sbjct: 60 ARGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLAR 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A +G + + DKDL QLV P L +T+ E +D+ V K+G+PPE++V L Sbjct: 120 QASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNSKFGVPPERIVDYLMLV 179 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ +G KTA L E+G+++ ++ A +K N+ E L+R L Sbjct: 180 GDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVA-GNNLREAIPNFPLTRTL 238 Query: 247 VMLRTDVPIT 256 + ++ D +T Sbjct: 239 LTVKCDCDLT 248 >gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917] gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917] Length = 996 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 322/1037 (31%), Positives = 516/1037 (49%), Gaps = 121/1037 (11%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L L+DG S +R+FYA L+ K DG P + GF L + R +A Sbjct: 10 LLLIDGHSLAFRSFYAFSKGGEGGLATK-DGRPTSVTYGFLKALLDHCKGLRPSGVA--- 65 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI-PAIEIQGFEADDI 120 + FD TFR+E +YKA+R PE+ L ++ + P G+EADD+ Sbjct: 66 -IAFDTAEPTFRHEADANYKAHRDVAPEVFFQDLEQLQQILRQQLRLPLCLAPGYEADDV 124 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170 + T A +G+ V I+S D+DL QLV LY I+ V Sbjct: 125 LGTLANRAANDGWRVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKNSGPSLINEAGVEA 184 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--K 228 K G+ P +V L+ALTGDS DNIPG+ G+G KTA LL+E G+L+ + + ++ + K Sbjct: 185 KLGVTPASVVDLKALTGDSSDNIPGVKGVGPKTAINLLKENGDLDGVYQALAEVEAEGPK 244 Query: 229 RRENILEYA---------ETARLSRKLVMLRTDVPITIPLE-HLILEDCNGPRLISFLKA 278 ++ A + A LSRKL + D+P+ P E L L + L + L+ Sbjct: 245 ASRGAIKGALKGKLSADRDNAYLSRKLAEILVDIPL--PEEPDLDLGTVDADGLSARLQE 302 Query: 279 LEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEI--------DRDTTIKTSQ 330 LE L+ ++ + T + G+A + +DT + + Sbjct: 303 LELNSLVRQIPAF--------------VATFSSGGLAANGHLLGQVGQVQVQDTGTEGAT 348 Query: 331 FSSLSDQTSKINSEQTPQKLFLE-RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGS 389 ++ TS TPQ + E +L+ L +++ +D Q V Sbjct: 349 EGVVAPATSDSLPLLTPQLIRTEHQLKAL---------IDRLLLCRDPAQPV-------- 391 Query: 390 ASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE- 448 + T ++ F ++ + + + + DD ++ + + + +DS+ L + Sbjct: 392 -ALDTETSDLNPFKAQLVGVGVCWGPELDDLAY-IPVGHRPSAEPSLEDSSAIQQLPLDT 449 Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIAS 507 +L+ L + + K N KYD+L+L R+G+ + G D +L Y+ D+ + H + + Sbjct: 450 VLAQLAPWLASAEHPKALQNAKYDRLILLRHGLPLGGVVMDTLLADYLRDAA-AKHGLDA 508 Query: 508 IAQKWLSYTRKEIL--------KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559 +A++ Y + L K K+S ++ +Q + + ++ +L L LR + Sbjct: 509 MAER--DYGIQPTLFSDLVGKAKDGKASC-FAEVEINQAALYCGMDVHLTRRLALDLRQQ 565 Query: 560 LIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617 L +LL + ++++ P+ V++ ME TGI+ID L +S E+++ L LE + Sbjct: 566 LAAMGPRLLPLLDQVELPLEPVLALMEATGIRIDHPYLAALSTEMAQTLERLETEAKQAA 625 Query: 618 GEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675 G +FNL+SPKQLG++LF L +TKTG + T A LE++ D+P++ +LE R Sbjct: 626 GMEFNLASPKQLGELLFDTLGLDRKKSRRTKTG-YSTDATVLEKLEQ-DHPVVPLVLEHR 683 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 LSK+KSTY D+LP + T RVHT ++ A T TGRL+S PNLQNIP++T+ ++IR+ Sbjct: 684 TLSKLKSTYVDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEFSRRIRK 743 Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 AF+ +L+SADYSQIELRIL H++ L Q + + D+H + A + + V+ Sbjct: 744 AFLPQAGWQLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLL--EKKAVTA 801 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 RR KTINF +IYG+ R A + + +++A +++ +Y R+P + ++E + Sbjct: 802 DERRLGKTINFGVIYGMGAQRFARETGVSQAQAKEFLSKYKERYPKVFAFLELQERLALS 861 Query: 856 NGYVETIFGRR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAA 897 GYVETI GRR H+D EI+ + + + RAA NAPIQGS+A Sbjct: 862 RGYVETILGRRRPFHFDRNGLGRLLGKDPLEIDLEVARRGGMEAQQLRAAANAPIQGSSA 921 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AMI + +LE L ++LLQ+HDELV EV + Q++V +ME+A I Sbjct: 922 DIIKLAMIQLQAALEQQSLPARLLLQVHDELVLEVDPTALERVRQLVVTTMEQA----IQ 977 Query: 958 LRVPLKVNIKVSNNWQE 974 L VPL V V NW E Sbjct: 978 LSVPLVVETGVGANWME 994 >gi|260220821|emb|CBA28770.1| DNA polymerase I [Curvibacter putative symbiont of Hydra magnipapillata] Length = 542 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 221/529 (41%), Positives = 331/529 (62%), Gaps = 12/529 (2%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIAS 507 +L+ LK + EN LK+ +IKYD+ V +GI ++G+ D ML SYVL++ + H +AS Sbjct: 17 VLAKLKPWLENPQALKLVQHIKYDRHVFANHGIEVQGYAHDTMLQSYVLEADKP-HGLAS 75 Query: 508 IAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV-E 563 +A++ L + +++ + I D++ ++ E+A E+S+ L + L+L P++ + Sbjct: 76 LAERHLGRSGISFEDLCGKGANQISFDQVDIAKAAEYACEDSDQTLDVHLVLWPQIEAND 135 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 KL +YE L+ + + ++E G+ ID L S E+ + +L LE Y+++G+ FNL Sbjct: 136 KLKFIYE-LEIASSEALYRIERNGVLIDAPTLAAQSHELGQRILQLETEAYEIAGQPFNL 194 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 SSPKQLG+I F KL P KT TG T + LE++ D P+ +LE R L+K+K T Sbjct: 195 SSPKQLGEIFFDKLGMPVVKKTATGARSTDEEVLEKL-AEDYPLPAKLLEHRSLAKLKGT 253 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y D L RT RVHT Y+ A +TGRL+S +PNLQNIPI+T G+++R AF++ P Sbjct: 254 YTDKLAQLALPRTGRVHTHYAQAVAVTGRLSSNDPNLQNIPIRTAEGRRVREAFVAAPGC 313 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 + SADYSQIELRI+AHI+ L + F + LD+HR AAE+FGV +++VS + RR+AK Sbjct: 314 VIASADYSQIELRIMAHISDDPALLRAFHDGLDVHRATAAEVFGVPVDQVSSEQRRYAKV 373 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 INF +IYG+S F LA L I + A +YI+RYF R+PG+ Y+E T+ ++ GYVET+F Sbjct: 374 INFGLIYGMSAFGLARNLGIDNTAAKNYIQRYFERYPGVKAYMESTRELAKRQGYVETVF 433 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 GRR+ I + K + ERAAINAP+QG+AAD+ + +M+ V + L+ +TKM++Q Sbjct: 434 GRRLQLAGIKNAKGAQLAGLERAAINAPMQGTAADLIKLSMVKVQQVLDAQNKSTKMIMQ 493 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDELVFEVP++E+ I M L+VPL + V NW Sbjct: 494 VHDELVFEVPQDEVDWVRTEIPSLMAGVA----ELKVPLLAEVGVGPNW 538 >gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I] gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I] gi|332381798|gb|AEE66645.1| DNA polymerase I [Bordetella pertussis CS] Length = 904 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 214/531 (40%), Positives = 330/531 (62%), Gaps = 11/531 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506 E+++ L+ + E+ K+ H+ KYD V G+S+ G ED ML +YVL+S R + Sbjct: 379 EVIARLRGWLEDAGRAKLLHHAKYDTHVFANEGVSLAGVAEDTMLQAYVLESHRGV-GLN 437 Query: 507 SIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 +AQ++L + +++ I D+++ ++ E+S+ LQL +LRP++ + Sbjct: 438 DLAQRFLGRSGVNYEDLCGKGAKQIGFDEVAVPLAGHYSCEDSDFTLQLHEVLRPRVAED 497 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 + L L+ + V++ +E G+++D L + S ++ + +L+LE+ Y+L+G+ FNL Sbjct: 498 EGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLALEQRAYELAGQPFNL 557 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 +SPKQLG+ILF ++ P KT G T + L ++ D P+ + +LE+R LSK+KST Sbjct: 558 NSPKQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKL-AQDYPLPQVLLEYRGLSKLKST 616 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y D LP I+ T RVHT YS A+ +TGRLAS +PNLQNIP++T+ G+++R AFI+ Sbjct: 617 YTDKLPRMISPATGRVHTHYSQAAVITGRLASSDPNLQNIPVRTEAGRRVREAFIAE-QG 675 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 KL+SADYSQIELRI+AH++ L + F DIHR A+E+FGV + +V + RR AK Sbjct: 676 KLLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKA 735 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 INF +IYG+ F LA+ L I R A YI RYF R+PG+ Y++ T+ R GYVET+F Sbjct: 736 INFGLIYGMGVFGLASNLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVF 795 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 GRR+ +I + R ERAAINAP+QG+AAD+ + AM++V L+ +L T+M++Q Sbjct: 796 GRRLQLPDIRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLDAERLRTRMIMQ 855 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDELV EVP+EE+ ++ + M LRVPL + + NW++ Sbjct: 856 VHDELVLEVPDEELAAVAEALPRLMCDVA----TLRVPLVAEVGMGTNWEQ 902 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 98/250 (39%), Positives = 148/250 (59%), Gaps = 6/250 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAF+A P L R G P A+ G NML KL+Q+ + E + +FD Sbjct: 5 LLLVDGSSYLYRAFHAMPDL-RNAQGEPTGALYGVVNMLRKLVQDHKAE----YAVCVFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++++PDYK++RP +PE L Q+ + A +A G P + I+G EADDII T Sbjct: 60 ARGKTFRDDLFPDYKSHRPPMPEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLAR 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A +G + + DKDL QLV P L +T+ E +D+ V K+G+PPE++V L Sbjct: 120 QASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAGVNSKFGVPPERIVDYLMLV 179 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ +G KTA L E+G+++ ++ A +K N+ E L+R L Sbjct: 180 GDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVA-GNNLREAIPNFPLTRTL 238 Query: 247 VMLRTDVPIT 256 + ++ D +T Sbjct: 239 LTVKCDCDLT 248 >gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107] gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107] Length = 998 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 315/1028 (30%), Positives = 511/1028 (49%), Gaps = 101/1028 (9%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L LVDG S +R+FYA L+ K DG P + GF L + + + +A Sbjct: 10 LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGRPTSVTYGFLKSLLDTGKTFKPQGVA--- 65 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120 + FD TFR++ +YKA+R PE+ L L ++ + +P G+EADD+ Sbjct: 66 -IAFDTAEPTFRHKADTNYKAHRDVAPEVFFQDLEQLQQILSDQMRLPLCIAPGYEADDV 124 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170 + T A G+ V I+S D+DL QLV + LY I + V+ Sbjct: 125 LGTLANRAADAGWGVRILSGDRDLFQLVDNSRDIAVLYMGGGPYAKGSGPTLIQEDGVVS 184 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK--K 228 K G+ P+K+V L+ALTGDS DNIPG+ G+G KTA LL++ +L+ + + ++ + K Sbjct: 185 KLGVMPDKVVDLKALTGDSSDNIPGVRGVGPKTAINLLKDNIDLDAVYATLAEVEAEGPK 244 Query: 229 RRENILEYA---------ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279 ++ A + A LSR L + D+P+ E L L+ + L L+ L Sbjct: 245 ASRGAIKGALIGKLRSDRDNAYLSRMLAEILVDIPLPKDPE-LGLQQVDAEGLSDRLEDL 303 Query: 280 EFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTS 339 E L+ +V + T G + + T K S + D S Sbjct: 304 ELNSLVRQVGGF--------------VATFSTGGYGANANSEAEKTPKRSPAKTKPDSAS 349 Query: 340 KINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT- 398 S PQ+ +E + P I + + +Q VQ+L I DT Sbjct: 350 STESAAAPQQGSVE--AEAGAIPCLQPQL--IESNEALQALVQRLMDCTDPEAPIAIDTE 405 Query: 399 ---MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKK 455 ++ F ++ + + + + D ++ I ++ + + + +L L Sbjct: 406 TTDLNPFKAELVGVGVCWGEANDALAYI--PIGHKPPSELTEATPPQQLPLETVLMALSP 463 Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514 + + K N KYD+L+L R+G+++ G D +L Y+ D+ + H + ++++ Sbjct: 464 WLASPQHPKALQNAKYDRLILLRHGLTLNGVVIDTLLADYLRDAA-AKHGLDVMSEREFG 522 Query: 515 Y---TRKEILKSRKSSIPIDKISDSQVQEHAI---ENSNVILQLWLLLRPKL--IVEKLL 566 + T +++ +++ +D +++ ++ + +V +L L LR L + +LL Sbjct: 523 FRPTTYGDLVGKKQT------FADVEIEPASLYCGMDVHVTRRLALQLRQTLQAMGPQLL 576 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 + E +++P+ V++QME TGI+ID LK +S E+ L LE ++ FNL+SP Sbjct: 577 PLLEGVEQPLEPVLAQMEATGIRIDVPYLKTLSDELGSTLNRLETEAKQVAEVDFNLASP 636 Query: 627 KQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 KQLG++LF L +TKTG + T A LE++ D+P++ +LE R LSK+KSTY Sbjct: 637 KQLGELLFDTLGLDRKKSRRTKTG-FSTDATVLEKLEH-DHPVVPLVLEHRVLSKLKSTY 694 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 D+LP + T RVHT ++ A T TGRL+S PNLQNIP++T+ ++IR+AF+ Sbjct: 695 VDALPQLVEAETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLPQEGWT 754 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L+SADYSQIELRIL H++ L + + D+H + A + + ++VS RR KTI Sbjct: 755 LLSADYSQIELRILTHLSGEEVLQEAYRTGDDVHALTARLLL--DKDEVSADQRRLGKTI 812 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF +IYG+ R A + + +EA +++ +Y R+P + ++E + GYVETI G Sbjct: 813 NFGVIYGMGAQRFARETGVSSAEAKEFLTKYKQRYPKVFAFLELQERLALSRGYVETILG 872 Query: 865 RR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 RR H+D EI+ + + + RAA NAPIQGS+ADI + AM+ Sbjct: 873 RRRPFHFDRNGLGRLLGKDPLEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQ 932 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 + L + ++LLQ+HDELV EV + + T ++V++ME A I L VPL V Sbjct: 933 LQAMLLSQGIPARLLLQVHDELVLEVAPDALDTTRNLVVNTMENA----IKLSVPLVVET 988 Query: 967 KVSNNWQE 974 V +W E Sbjct: 989 GVGRDWME 996 >gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32] gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32] Length = 891 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 230/619 (37%), Positives = 355/619 (57%), Gaps = 24/619 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 +++D Y I++ D + KL T + + T +++ F ++ + I+ S D Sbjct: 288 LSSDDYRTILSAGDFSALMDKLGTQSIFAIDLETTSLNPFEAEIVGISFSFSDH------ 341 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 + +I ++ H +L L+ + KIG NIKYD VL R GI Sbjct: 342 --QAYYIPVAHHYL--GVPDQLSLAHVLQALRPLLLDPAIKKIGQNIKYDYQVLRRAGIE 397 Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIA-----QKWLSYTRKEILKSRKSSIPIDKISDS 536 M G + D ML SY+L+ RSSH + ++A K +SY ++ S K ++ Sbjct: 398 MEGIWCDTMLASYLLNPNRSSHGLNALAVELLDHKMISYA--DVAGSGKDQKNFAQVEVE 455 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 + ++ E+++ L L P++ + + L+ P++ ++++ME+ G+++D LL+ Sbjct: 456 KASIYSCEDADATWLLHKLFLPQIEESGMERLLFELEMPLVKILAEMELYGVKLDLVLLQ 515 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT-GQWKTTAQ 655 ++SA L LE I+ +G FN++SPKQLG++LF L+ P G KTKT W T Sbjct: 516 KLSAGFGSQLAELEREIFQCAGTTFNINSPKQLGEVLFEHLQLPCGKKTKTKTGWSTNVD 575 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 +LE++ ++ I + IL++R LSK+KSTY D+LP + + R+HT Y+ A T TGRL+S Sbjct: 576 ELERL-AAEHEIGRLILQYRSLSKLKSTYTDALPKLVYSESGRIHTSYNQAVTNTGRLSS 634 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 EPNLQNIPI+++ G+ IR AFI+ ++SADYSQIELR+LAH+++ F Sbjct: 635 SEPNLQNIPIRSEEGRSIRHAFIAEEGCLILSADYSQIELRVLAHLSQDRVFCDAFAKDE 694 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH AAE+FG+ V+P+MRR AKTINF +IYG PF LA +L + A ++I Y Sbjct: 695 DIHTRTAAEVFGLFPGMVTPEMRRQAKTINFGVIYGQGPFSLAKELGVSTKVAKEFIDNY 754 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R G +++ G+V TI GRR+ +INS +IR+ +R AIN PIQGS Sbjct: 755 FDRHAGARVFLDGCVREAEAKGHVTTILGRRLPIPDINSTNGNIRSFAQRNAINYPIQGS 814 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI ++AM+ V + L +++++Q+HDELVFEVP EE T +++ H ME A Sbjct: 815 AADIIKQAMVRVSGRMRREGLKSRLIMQVHDELVFEVPLEEKLTMEKLVCHEMENA---- 870 Query: 956 INLRVPLKVNIKVSNNWQE 974 + LRVPLKV++ +NW E Sbjct: 871 LTLRVPLKVDVNFGSNWSE 889 Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 121/255 (47%), Positives = 174/255 (68%), Gaps = 6/255 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M ++ L+L+DGSS+IYRA+YA LS G P NA+ GF ML K++++ + + H Sbjct: 1 MPEKPKLYLIDGSSYIYRAYYAIRHLSSPK-GFPTNALYGFIQMLLKVVKDRKPD----H 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+FD +TFRNEIYP YKANR +P+ L Q+ ++ A +AF IP +E+ GFEADDI Sbjct: 56 LAVVFDAGKLTFRNEIYPAYKANRSAMPDDLRLQIEPIKEAVRAFRIPVLELPGFEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T EK+G A I++ DKDLMQ+V+ + L DT+K++ V++++G+PPE++V Sbjct: 116 IGTIACDCEKKGMAAVIVTGDKDLMQIVTDSVTLLDTMKDKASGPAEVVERFGVPPERVV 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + AL GDS DNIPGIPGIG KTA L+QE+ +L+ +L NAS +K K E + E+A+ A Sbjct: 176 DILALAGDSSDNIPGIPGIGEKTAIKLIQEHHSLDQLLENASVVK-GKVGERLREFADQA 234 Query: 241 RLSRKLVMLRTDVPI 255 RLSR+L + +VP+ Sbjct: 235 RLSRRLATIECNVPV 249 >gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F] gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F] Length = 950 Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust. Identities = 294/999 (29%), Positives = 489/999 (48%), Gaps = 93/999 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P+ + G NA+ GF ML +++ + + H V F Sbjct: 9 LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNE+ P YK R PE LL QLPL++ A G+ IE GFE DD+IAT Sbjct: 65 DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + +K G+ ++S D+D QLV T LY D++H +I K+ + P + Sbjct: 125 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIIDKYKVTPAQY 182 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DNIPG+PG+G AA + ++G+L+ I +A I KK E++ + Sbjct: 183 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298 +L+RK+ L DV + + +E L + ++ + K LEF + +RV T++ A Sbjct: 242 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGA-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 K S S + T N+EQ Q L+ Sbjct: 300 ----------------------------KASNTSGAGEST---NNEQNEQDSSLD----- 323 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIAI 409 +N T I + +WV+ +++ G + ++D D A + Sbjct: 324 ----LNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVGH 379 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 A + D+ + I ++ TS + +T + + L +F ++EH I H Sbjct: 380 AWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHGY 438 Query: 470 KYDKLVLHRYGISMRGFE----DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 K +LH G + D L Y+ + + A+ +L E + + Sbjct: 439 KE---LLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQ 495 Query: 526 SSIPIDKISDSQVQE----HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 ++ D D QV+E H + + +I L + L P + + + ++ P+ V+ Sbjct: 496 GTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 552 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME TG ++D L + + + +E ++ +G + NL SPKQL +LF + Sbjct: 553 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLKP 612 Query: 642 GAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 +TK+G + T A L+ + N N + +L R+++K+K +L + N Sbjct: 613 TKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNTS 671 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIE 754 +R+HT + TGRL+S++PNLQNIP + G++IR F+ + L+S DYSQ+E Sbjct: 672 DERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVE 731 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LRI+A ++ L + F + D H+ VA+ ++ + +++++ R H K +++ + YG+S Sbjct: 732 LRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLST 791 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 + LA QL+I EA RYF F +H+Y+E R+ GY ETIFGRR ++ ++S Sbjct: 792 YGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHS 851 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 R ERAA+NAPIQGSAADI + AMI ++L + + ++++LQIHDELV E+ Sbjct: 852 TNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAP 911 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E ++++ ++ME A ++L VPL V+ + ++WQ Sbjct: 912 GEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 946 >gi|311113501|ref|YP_003984723.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931] gi|310944995|gb|ADP41289.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931] Length = 955 Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust. Identities = 303/996 (30%), Positives = 484/996 (48%), Gaps = 105/996 (10%) Query: 29 KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIP 88 + DG A+ F + L ++ K+ SH AV FD P TFR E Y +YK+ R IP Sbjct: 12 RSDGQHTEAVHAFLSTLLNII----KDHNPSHIAVAFDLPGGTFRTEEYSEYKSGRNVIP 67 Query: 89 EMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV 148 E QL L++ A IPA+ + +EADDI+AT T + + V I+S D+D+ QLV Sbjct: 68 EAFDGQLDLIKKMLGALKIPALTQENYEADDIVATLTRQGSEAQYKVLILSGDRDIFQLV 127 Query: 149 SP-TTCLYDTVKE-----EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYK 202 + T LY +++D V KK +PP L ALTG+ DN+PG+PG+G Sbjct: 128 TDDVTLLYPVTTGPSKGIQRMDPAAVEKKTKVPPRLYPDLAALTGEQADNLPGVPGVGPG 187 Query: 203 TAALLLQEYGNLENILINASRIKQKKR---RENILEYAETARLSRKLVMLRTDVPITIPL 259 AA L EYG+LE +L N+ IK KK RENI E R +R+L L + + + Sbjct: 188 FAAKWLHEYGDLEGVLANSENIKGKKGEALRENI----ENVRRNRRLNQLVDTLNLDVEF 243 Query: 260 EHL-ILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIET 318 + + + D L +F +EF + R + PV+ + Sbjct: 244 DQMRFIPDLQ--ELEAFFDEVEFRTIRKRAQDI-------LGPVIRALGAQ--------- 285 Query: 319 EIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQ 378 ++T+ ++D P E PI D + + D + Sbjct: 286 -------VRTAGEEPMTDNG-------VPSGPTFE--------PIRTDDAITVKSAADFR 323 Query: 379 QWVQKLETIGSA------SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV----ETIF 428 W + +G + ++ A P+ + T K+ E Sbjct: 324 VWCEHAAHVGYGRDASGNAIEVPERLKGAVTLFPVIDVPVAREGVKVTKTKIRAAEENPV 383 Query: 429 IDLSVHTSQDST---GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 + + TS++S+ +++++ S ++ + KI ++K + +L YG + G Sbjct: 384 LRGIILTSKESSLWINLTNISEDLASAFAEWVSDPQMRKIVMDLKNQRKLLREYGYKLDG 443 Query: 486 -FEDIMLMSYVLD----SGRS--SHDIASIAQKWLSYTRKEI--LKSRKSSIPIDKISDS 536 ED L SY+ + R + I +A+K+L ++E L + + + ++ Sbjct: 444 AIEDPSLSSYMCGYIAAANRRLFAERIEDLAEKYLWIPQQEFSELVFPEEAPSLFEMPGE 503 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 + + + S VI +L +L ++ + L +YE ++ P++ V++ ME GI + LL Sbjct: 504 ENLRYFTQVSRVIHELARILHFEMQEQGQLKIYEDIELPLLYVLADMEQAGIAVSDALLN 563 Query: 597 QVSAEISKNLLSLEENIY-----DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 +++ S EE D++GE NL+S KQL +LF +L P K K+G + Sbjct: 564 ELNDTFSSRASMAEEQAKVLIGGDVNGEPLNLASVKQLQTVLFERLGLPKTRKIKSG-YS 622 Query: 652 TTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 T ++ + + +P + + +R K+K T + RVHT + Sbjct: 623 TDSESVADLLTKVSPESDGAQFLIALQAYRDNIKLKQTVEGLQKAAVAD--GRVHTTFQQ 680 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-------KKLISADYSQIELRIL 758 + TGRL+S PNLQNIPI+TD G++IR AFI P + L++ADYSQIE+RI+ Sbjct: 681 NAASTGRLSSTAPNLQNIPIRTDEGRRIRGAFIVAPKILDGVEYEGLLTADYSQIEMRIM 740 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 H+A L Q + + D+HR V +E+FGV E+V+PQMR K +++ + YG+S F LA Sbjct: 741 VHLAADEKLIQAYADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLAYGLSRFGLA 800 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL I EA + YF RF + ++ +GY ETI+GRR +++SP + Sbjct: 801 KQLNISSDEAGELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGRRRSLPDLDSPNRT 860 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 R ERAA+NAPIQG+AADI + AMI++H+ L++ L T+MLLQ+HDE++ EV E Sbjct: 861 RREAAERAALNAPIQGTAADIIKIAMINIHRRLQEENLKTRMLLQVHDEIILEVAAGERE 920 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 A +I+V M +A I L+VPL V + +W+E Sbjct: 921 AAQRILVEEMSEA----IELKVPLDVQVGWGKSWEE 952 >gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A] gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 55813] gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A] gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8] Length = 955 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 295/1000 (29%), Positives = 490/1000 (49%), Gaps = 95/1000 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P+ + G NA+ GF ML +++ + + H V F Sbjct: 14 LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 69 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNE+ P YK R PE LL QLPL++ A G+ IE GFE DD+IAT Sbjct: 70 DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 129 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + +K G+ ++S D+D QLV T LY D++H +I K+ + P + Sbjct: 130 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIIDKYKVTPAQY 187 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DNIPG+PG+G AA + ++G+L+ I +A I KK E++ + Sbjct: 188 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 246 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298 +L+RK+ L DV + + +E L + ++ + K LEF + +RV T++ A Sbjct: 247 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGA-- 304 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 K S S + T N+EQ Q Sbjct: 305 ----------------------------KASNTSGAGEST---NNEQNEQD--------- 324 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIAI 409 S +N T I + +WV+ +++ G + ++D D A + Sbjct: 325 SSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVGH 384 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 A + D+ + I ++ TS + +T + + L +F ++EH I H Sbjct: 385 AWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHGY 443 Query: 470 KYDKLVLHRYG-----ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524 K +LH G + + F D L Y+ + + A+ +L E + Sbjct: 444 KE---LLHLLGAVDLDMDLPMF-DTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 499 Query: 525 KSSIPIDKISDSQVQE----HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + ++ D D QV+E H + + +I L + L P + + + ++ P+ V+ Sbjct: 500 QGTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVL 556 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ME TG ++D L + + + +E ++ +G + NL SPKQL +LF + Sbjct: 557 HGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLK 616 Query: 641 SGAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 +TK+G + T A L+ + N N + +L R+++K+K +L + N Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNT 675 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753 +R+HT + TGRL+S++PNLQNIP + G++IR F+ + L+S DYSQ+ Sbjct: 676 SDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQV 735 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELRI+A ++ L + F + D H+ VA+ ++ + +++++ R H K +++ + YG+S Sbjct: 736 ELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLS 795 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + LA QL+I EA RYF F +H+Y+E R+ GY ETIFGRR ++ ++ Sbjct: 796 TYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALH 855 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S R ERAA+NAPIQGSAADI + AMI ++L + + ++++LQIHDELV E+ Sbjct: 856 STNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIA 915 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E ++++ ++ME A ++L VPL V+ + ++WQ Sbjct: 916 PGEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 951 >gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8] gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8] Length = 908 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 243/624 (38%), Positives = 359/624 (57%), Gaps = 31/624 (4%) Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 P Y I D+ QW++KL+ +F T ++ ++ + + S Sbjct: 303 PSVEKQYQVITEQADLDQWLKKLKDSDLFAFDTETTSLRYMDAEIVGV-----------S 351 Query: 422 FKVE---TIFIDLSVHTSQDSTGK-NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVL 476 F VE ++ L D G L ++ +L LK E+ K+G N+KYDK VL Sbjct: 352 FAVEPGKAAYVPLG----HDYMGAPEQLDRDSVLEQLKPLLEDPKHKKVGQNLKYDKNVL 407 Query: 477 HRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDK 532 + I + G ED M+ SYVL+S + HD+ S+A+ +L + T + I + ++ Sbjct: 408 ANHDIQLEGIAEDTMVESYVLNSVGTRHDMDSLARTYLDEETITYESIAGKGAKQLTFNQ 467 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQID 591 I +A E++++ L+L L P+L KL VY +D P++ V+S+ME G I Sbjct: 468 IDLESAGPYAAEDADITLRLHQTLAPRLKDTGKLESVYREIDLPLVPVLSRMEQRGTLIS 527 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L+Q S E+++ + LE+ ++++GE FNL S KQL IL+ KL KT G Sbjct: 528 ASTLRQHSQELAERMAELEKEAHEVAGEAFNLGSTKQLQAILYDKLGLRVIKKTPKGA-P 586 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 +TA+ + Q ++ + + I+E R LSK+KSTY D+LP I+ RT RVHT Y A T TG Sbjct: 587 STAEPVLQELAHEHELPRLIVEHRSLSKLKSTYTDTLPELIHHRTGRVHTSYHQAVTATG 646 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S EPNLQNIPI+T G++IR+AFI+P KL++ADYSQIELRI+AH++ L F Sbjct: 647 RLSSSEPNLQNIPIRTQEGRRIRQAFIAPKGYKLLAADYSQIELRIMAHLSGDRGLLTAF 706 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 E+ DIH+ AAE+FGV +++V+ RR AK INF +IYG+S F L+ QL + R A +Y Sbjct: 707 EHGEDIHKATAAEVFGVTVDEVTGDQRRSAKAINFGLIYGMSAFGLSRQLEVDRKTAQEY 766 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I RYF R+PG+ +Y++ + +GYVET++GRR++ EIN+ ++ ER AINAP Sbjct: 767 IDRYFERYPGVLKYMDNIRKQAHDDGYVETLYGRRLYLPEINARNKQLQQAAERTAINAP 826 Query: 892 IQGSAADITRRAMISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 +QG+AADI +RAMI V L +H M +Q+HDEL+ EV EE + +V M Sbjct: 827 MQGTAADIIKRAMIEVDNWLRSEHASDACMTMQVHDELIIEVREEAVDKVKDGLVKRMSA 886 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A +L VPL V V +NW + Sbjct: 887 AA----SLDVPLLVEAGVGDNWDQ 906 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 107/281 (38%), Positives = 162/281 (57%), Gaps = 10/281 (3%) Query: 7 LFLVDGSSFIYRAFYATPLL--SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + LVDGSS+++RA++A P L S+ H P AI G +ML ++ Q+ S V+ Sbjct: 9 VVLVDGSSYLFRAYHALPPLTTSKNH---PTGAIKGVISMLRRIEQDFP----GSKTVVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+++Y +YKANRP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 62 FDAKGKTFRHDMYEEYKANRPPMPDDLAVQIEPIHEIVRAMGLPLLIVPGVEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 + A +G V + + DKD+ QLVS L +T+ E +D + V++K+G+ PE+++ A Sbjct: 122 AHEATSKGIDVVVSTGDKDMAQLVSDHVTLINTMTETAMDRDGVVEKFGVTPEQIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD +DNIPG+ G KTA LQ Y NL+N++ ++ IK K E + E +T LSR Sbjct: 182 LVGDKVDNIPGVNKCGPKTAVKWLQSYDNLDNLIEHSDEIK-GKIGEYLREATDTLPLSR 240 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 +L +RTDV + LE L + L+ K EF I Sbjct: 241 ELATIRTDVELEFGLEDLQERQQDDASLLELFKEYEFRTWI 281 >gi|255327557|ref|ZP_05368624.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296] gi|255295451|gb|EET74801.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296] Length = 1003 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 324/1063 (30%), Positives = 483/1063 (45%), Gaps = 152/1063 (14%) Query: 1 MQKENH-LFLVDGSSFIYRAFYATPLLSRK--------HDGLPVNAIAGFCNMLWKLLQN 51 M EN L L+DG S R+F+ ++ K DG A+ F + L ++++ Sbjct: 1 MTTENKTLLLIDGHSLALRSFFGIYTMAEKTGQHIFVRSDGQHTEAVHAFLSTLLSIIKD 60 Query: 52 SRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIE 111 ++ SH AV FD P TFR Y +YK R IPE Q+ L++ A IPA+ Sbjct: 61 NQP----SHIAVAFDLPGGTFRTAEYGEYKGGRNAIPEAFNGQIDLIKKMLGALNIPALT 116 Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE-----EKIDI 165 + +EADDI+AT T + G+ V I+S D+D+ QLV+ T LY +++D Sbjct: 117 YENYEADDIVATLTRRGTEAGYKVLILSGDRDIFQLVTDDVTLLYPVTTGPSKGIQRMDP 176 Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225 V KK +PP L ALTG+ DN+PG+PG+G AA L EYG+L+ ++ N+ +I Sbjct: 177 AAVEKKTKVPPHMYPDLAALTGEQADNLPGVPGVGPGFAAKWLGEYGSLDAVIENSDKIG 236 Query: 226 QKKR---RENILEYAETARLSRKLVMLRTDVPITIPLEHLILE-DCNGPRLISFLKALEF 281 KK RENI + +R+L L D+ + + LE D + L +F +EF Sbjct: 237 GKKGEALRENI----DNVVRNRRLNQLVNDLDLNVTLEDTAFTPDLDA--LNTFFDEVEF 290 Query: 282 TKLINRVATTYDC---DAANIEPVVLDINTTENKG------------IAIETEIDRDTTI 326 + R A T A P E IA Sbjct: 291 RTIRKRAADTLGPIVRAAGTAGPASSTAEAGEEGATKKAPTGPVYAPIATSAPTKNADAA 350 Query: 327 KTSQFSSLSDQTSKINSEQTPQKLFLERLQ-KLSQYPINNDSYTKIVNTKDIQQWVQKLE 385 F + + + + N EQ ERL+ ++ YP+ N + Sbjct: 351 AFRAFCAAAAEENYGNDEQGAPIAVPERLEGAVTLYPVTNLPVAR--------------P 396 Query: 386 TIGSA-SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNT 444 IG A + K+ + A P + + L +TS ++T ID Sbjct: 397 AIGDAPAVKVTKTKIRAAEENPELLGV--LLTSKNTSLWIDTRSID-------------- 440 Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSH 503 E+ + L + +E KI ++K + +L YG + G ED L SY+ Sbjct: 441 --PELDAALAAWLSDEAARKIVMDLKVQRKLLRAYGYELAGAVEDPALSSYMCG------ 492 Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN------------------ 545 A + L R E L R IP D + Q E Sbjct: 493 -FIPTATRKLFSERMEDLAERYLWIPKDPYAQLVFQPEEDEAEPSLFSLPGEAEPVDNLR 551 Query: 546 -----SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 S +I +L LL ++ L VYE ++ P++ V++ ME GI + LL ++ Sbjct: 552 YFTQISRIIHELARLLHYEMEEHGQLKVYEEIELPLLYVLADMEQAGIAVSDALLTELHD 611 Query: 601 EISKNLLSLEENIYDLSG---------EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 S ++ + G E NL+S KQL +LF KL P K K+G + Sbjct: 612 TFSARANQAQDAARTIIGDTVQTDDGEEPLNLASVKQLQTVLFDKLALPHTRKIKSG-YS 670 Query: 652 TTAQDLEQINCGDNP-------------IIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 T A+ + ++ +P NI + + ++ AD R Sbjct: 671 TDAESVTELLAKISPESDGAAFLGALAAYRDNIKLVQTVEGLQKAAADD---------GR 721 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-------KKLISADYS 751 VHT + + TGRL+S PNLQNIPI+T+ G++IR AFI P + L++ADYS Sbjct: 722 VHTTFQQGAASTGRLSSTAPNLQNIPIRTEEGRRIRGAFIVAPAPVDGVEYEGLLTADYS 781 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIE+RI+ H+A L +E D+HR V +E+FGV E+V+P+ R K +++ + YG Sbjct: 782 QIEMRIMVHLAADEKLIAAYEAGEDLHRYVGSEVFGVAPEEVTPEQRSKVKAMSYGLAYG 841 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 +S F LA QL I EA + YF RF + ++ Q+GY ETIFGRR + Sbjct: 842 LSRFGLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVLKQAHQDGYTETIFGRRRVLPD 901 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 ++SP R ERAA+NAPIQG+AADI + AMI++H+ L + L T+MLLQ+HDE++ E Sbjct: 902 LDSPNRVRREAAERAALNAPIQGTAADIIKIAMINIHRRLREEGLKTRMLLQVHDEIILE 961 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 V E A +++V M A +LRVPL V + +WQE Sbjct: 962 VATGEREAAERVLVEEMSGAA----SLRVPLDVQVGWGKSWQE 1000 >gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA] gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA] Length = 950 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 295/1000 (29%), Positives = 491/1000 (49%), Gaps = 95/1000 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P+ + G NA+ GF ML +++ + + H V F Sbjct: 9 LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNE+ P YK R PE LL QLPL++ A G+ IE GFE DD+IAT Sbjct: 65 DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + +K G+ ++S D+D QLV T LY D++H +I K+ + P + Sbjct: 125 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIIDKYKVTPVQY 182 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DNIPG+PG+G AA + ++G+L+ I +A I KK E++ + Sbjct: 183 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298 +L+RK+ L DV + + +E L + ++ + K LEF + +RV T++ A Sbjct: 242 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGA-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 K S S + T N+EQ Q L+ Sbjct: 300 ----------------------------KASNTSGAGEST---NNEQNEQDSSLD----- 323 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIAI 409 +N T I + +WV+ +++ G + ++D D A + Sbjct: 324 ----LNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVGH 379 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 A + D+ + I ++ TS + +T + + L +F ++EH I H Sbjct: 380 AWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHGY 438 Query: 470 KYDKLVLHRYG-----ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524 K +LH G + + F D L Y+ + + A+ +L E + Sbjct: 439 KE---LLHLLGAVDLDMDLPMF-DTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 494 Query: 525 KSSIPIDKISDSQVQE----HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + ++ D D QV+E H + + +I L + L P + + + ++ P+ V+ Sbjct: 495 QGTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVL 551 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ME TG ++D L + + + +E ++ +G + NL SPKQL +LF + Sbjct: 552 HGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLK 611 Query: 641 SGAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 +TK+G + T A L+ + N N + +L R+++K+K +L + N Sbjct: 612 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNT 670 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753 +R+HT + TGRL+S++PNLQNIP + G++IR F+ + L+S DYSQ+ Sbjct: 671 SDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQV 730 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELRI+A ++ L + F + D H+ VA+ ++ + +++++ R H K +++ + YG+S Sbjct: 731 ELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLS 790 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + LA QL+I EA RYF F +H+Y+E R+ GY ETIFGRR ++ ++ Sbjct: 791 TYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALH 850 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S R ERAA+NAPIQGSAADI + AMI ++L + + ++++LQIHDELV E+ Sbjct: 851 STNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIA 910 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E ++++ ++ME A ++L VPL V+ + ++WQ Sbjct: 911 PGEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 946 >gi|261337293|ref|ZP_05965177.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093] gi|270277662|gb|EFA23516.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093] Length = 960 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 290/998 (29%), Positives = 487/998 (48%), Gaps = 88/998 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAF+A P+ S G P NA+ GF ML ++ N + AV F Sbjct: 16 LLVIDGHSLAFRAFFALPVESFTTSQGQPTNAVYGFLTMLSDVITNEHP----TRLAVAF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRN++ +YK R P+ LL QLPL++ A QA G+ IE G+E DD+I T Sbjct: 72 DVKGGTFRNDLLEEYKGTREAAPQELLSQLPLIQQALQALGVTYIEQPGYEGDDVIGTLA 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + ++ G V ++S D+D QL+ TT LY D++H V +K+G+ P + Sbjct: 132 SMGQQAGDRVLVLSGDRDAFQLIDDDTTVLYP--GHHFKDLKHMTPAAVEEKYGVTPAQY 189 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236 L AL G+ DNIPG+PG+G AA + +YG+L+ I+ +A +I KK R+NI Sbjct: 190 PDLAALRGEKADNIPGVPGVGDGFAAKWIHQYGSLQGIIEHADQITGKKGEALRDNI--- 246 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-----TKLINRVATT 291 + L+RK+ L D+ + + ++ L + + L + AL+F TK++N + + Sbjct: 247 -DQVLLNRKVNALVRDLDLGVSVDDLTFGNVDHAELSALFSALQFGSRTRTKILNAFSNS 305 Query: 292 YDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLF 351 +P +D++ D D ++ ++D + I + Sbjct: 306 ------TAQPGAVDVDAI----------ADSDQQLQIPVLDQVTDAAALIAWAEQYLPAV 349 Query: 352 LERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411 + Q ++ ++ ++ + Q E +AS+ ++ ++KP A ++ Sbjct: 350 TDDTQTTNEPATGENAAGRMDIVTQLHQQSNDCEEAVNASWTLVA----VGNAKPGASSL 405 Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQD---STGKNTLTKEILSYLKKFFENEHFLKIGHN 468 T+ V D S+H + ST NT++ L ++ G N Sbjct: 406 KTI-VLSAQGHAVVVAMRDTSLHDAVQQIISTHANTMSVHGYKALLHMAQS-----AGLN 459 Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528 + D L Y+ D + H I A+ +L + + ++ Sbjct: 460 VPIPLF-------------DTKLAGYLADPDYTGHTIDEYAEHFLRIDVPAVQTQAQGTL 506 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LDKPMIDVVSQ 582 D + D + ++ ++ LQ L+ + + L E+ ++ P+ V+ + Sbjct: 507 DFDNMDDETPTQ---DDKDLGLQAALVSAMARHLARELQQREQYALLRCIELPVSVVLYR 563 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME G +D+ L + A ++ +E +D +G +FNLSSPK++G +LF + Sbjct: 564 MEQEGAAVDRMRLDSLLATFAEESGRMERMAWDAAGSEFNLSSPKKIGKVLFEDMGLTPL 623 Query: 643 AKTKTGQWKTTAQDLEQ--INCGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKRT 696 KTK+G + T A L N + + IL R ++K++ +L + IN+ Sbjct: 624 RKTKSGHYTTNAATLTTLYANAEEGSAAYVFLGAILRHRGVNKLQQI-VQTLIDAINRTD 682 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIEL 755 +HT + TGRL+S +PNLQNIP + G+ R AFI + L+SADYSQ+EL Sbjct: 683 GHIHTTFEQTVAATGRLSSTDPNLQNIPNRNAEGRDTRSAFIPAEGFDALLSADYSQVEL 742 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 R++A + L F++ D HR VA+ ++G+ ++ +S R H K +++ + YG+S + Sbjct: 743 RLMADFSGDEALIDAFKSGADFHRYVASLVYGIPVDDISGDQRSHVKAMSYGLAYGLSSY 802 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 L+ QL I EA ++YF F +HEY+E R+ GY ET+FGRR ++ + SP Sbjct: 803 GLSQQLGITPKEADALKQQYFRTFGKVHEYLESLVATARERGYTETMFGRRRYFPALRSP 862 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 +R ERAA+NAPIQGSAADI + AMI ++L + ++++LQIHDELV ++ Sbjct: 863 NRMVREAAERAALNAPIQGSAADIMKMAMIRAERALRSQGMRSRIVLQIHDELVVQLAPG 922 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E +A+ ++ +ME A + L VPL V+ + +WQ Sbjct: 923 EHESATALVKDAMEHA----VQLAVPLDVSTGIGTDWQ 956 >gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] Length = 945 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 216/535 (40%), Positives = 336/535 (62%), Gaps = 12/535 (2%) Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHD 504 +++++ K +E + LKIG NIKYD VL +YGI+++G D M+ Y++ H+ Sbjct: 415 AQKMVNIFKPLYEEDKILKIGQNIKYDYEVLAQYGINIKGKMFDTMIAHYLIQP-ELHHN 473 Query: 505 IASIAQKWLSYTR---KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 + +A+ L+Y E++ ++ K + +S + + E+A E++++ LQL+ +L PKL Sbjct: 474 MDYMAETLLNYKTIHIDELIGAKGKEQKNMRNLSPTSIYEYACEDADITLQLYNVLLPKL 533 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 ++ ++ P++ V++ ME+ G+ +D D L++ S +K + + E IY+ +GEK Sbjct: 534 KDVNAEKLFWDIEMPLVRVLANMEMNGVCLDTDALQETSNIFTKRMQTYEAQIYEQAGEK 593 Query: 621 FNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 FN+SSPKQ+GDILF K++ KTK GQ+ T + L+ + +PI++NIL +R + K Sbjct: 594 FNISSPKQVGDILFGKMQIMEKPKKTKKGQYVTNEEVLQSLEAS-SPIVRNILNYRGIKK 652 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 + TY D+LP INKRT R+HT ++ A T TGRL+S +PNLQNIP++TD G++IR+ FI Sbjct: 653 LLGTYVDALPKLINKRTGRIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIP 712 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 P SADYSQIELRI+AH++K + + F + DIHR AA+I+ + +E V+ R+ Sbjct: 713 EPECVFFSADYSQIELRIMAHLSKDENMIEAFRSGYDIHRATAAKIWHIPMEDVTDTQRK 772 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK NF IIYGI+ + LA ++ IP +EA I+ YF+ FP +H+++E K R+ GY Sbjct: 773 KAKQANFGIIYGITTYGLAQRMGIPNNEAKKLIEDYFNTFPKVHDFMESAKELARKKGYA 832 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 ETIFGRR + ++INS S++R ER AINAPIQG+ ADI + AMI +++ + +K Sbjct: 833 ETIFGRRRYLNDINSKNSTVRGFAERNAINAPIQGTEADIIKVAMIRIYERFCRENIRSK 892 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+LQ+HDEL F V +E I++ M+ AC L VPL + NW E Sbjct: 893 MILQVHDELNFSVFPDEKERVEHIVLEEMQAAC----TLSVPLIADAGWGKNWLE 943 Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 100/290 (34%), Positives = 159/290 (54%), Gaps = 15/290 (5%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + +FL+D + I+R++YA P ++ K GL +AI GF N L +++ + +H Sbjct: 27 DKIFLIDAYALIFRSYYAFIKNPRINSK--GLNTSAIMGFFNTLHEVITKEQ----PTHI 80 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFRNE +P YKA R PE + +P ++ +A IP ++ GFEADD+I Sbjct: 81 GVAFDV-GKTFRNEAFPQYKAQREATPEDIKLSVPYIQDILKAMHIPILQADGFEADDVI 139 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPP-E 177 T +G +++ DKD QL+ +Y +I + + +K+ IP Sbjct: 140 GTLATRFSADGIDTFMLTPDKDYGQLIGSHVYMYRPRHGGGYEILGEKEIKEKYNIPKTS 199 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ L AL GD+ DN PG PG+G KTA+ L+ E+G+++NIL N +IK K +E I Sbjct: 200 QVIDLLALMGDAADNFPGCPGVGEKTASKLINEFGSIDNILSNTDKIK-GKLKEKIENAV 258 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 + ++S+ L +R DVPI I L+ L E+ + +L LEF L+N+ Sbjct: 259 DDIKMSKFLATIRRDVPINIKLDELKTEEPDINKLHEIFTELEFRNLLNK 308 >gi|283458187|ref|YP_003362804.1| DNA polymerase I [Rothia mucilaginosa DY-18] gi|283134219|dbj|BAI64984.1| DNA polymerase I [Rothia mucilaginosa DY-18] Length = 1003 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 323/1060 (30%), Positives = 486/1060 (45%), Gaps = 146/1060 (13%) Query: 1 MQKENH-LFLVDGSSFIYRAFYATPLLSRK--------HDGLPVNAIAGFCNMLWKLLQN 51 M EN L L+DG S R+F+ ++ K DG A+ F + L ++++ Sbjct: 1 MTTENKTLLLIDGHSLALRSFFGIYTMAEKTGQHIFVRSDGQHTEAVHAFLSTLLSIIKD 60 Query: 52 SRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIE 111 ++ SH AV FD P TFR Y +YK R IPE Q+ L++ A IPA+ Sbjct: 61 NQP----SHIAVAFDLPGGTFRTAEYGEYKGGRNAIPEAFNGQIDLIKKMLGALNIPALT 116 Query: 112 IQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE-----EKIDI 165 + +EADDI+AT T + G+ V I+S D+D+ QLV+ T LY +++D Sbjct: 117 YENYEADDIVATLTRRGTEAGYKVLILSGDRDIFQLVTDDVTLLYPVTTGPSKGIQRMDP 176 Query: 166 EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225 V KK +PP L ALTG+ DN+PG+PG+G AA L EYG+L+ +L N +I Sbjct: 177 AAVEKKTKVPPHMYPDLAALTGEQADNLPGVPGVGPGFAAKWLGEYGSLQGVLDNRDKIG 236 Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILE-DCNGPRLISFLKALEFTKL 284 KK E + E + +R+L L D+ + + LE D + L +F +EF + Sbjct: 237 GKKG-EALRENVDNVVRNRRLNQLVNDLDLNVTLEDTAFTPDLDA--LNTFFDEVEFRTI 293 Query: 285 INRVATTYDCDAANIEPVVLDINTTENKGIAIET----------------EIDRDTTIKT 328 R A T + P+V + A E I+ K Sbjct: 294 RKRAADT-------LGPIVRAAGSAGATSSAAEAGEEGAPKKAPTGPVYAPINTSAPTKN 346 Query: 329 SQ------FSSLSDQTSKINSEQTPQKLFLERLQ-KLSQYPINNDSYTKIVNTKDIQQWV 381 + F S + + + EQ ERL+ ++ YP+ N + Sbjct: 347 ADAAAFRAFCSAAAEENYGTDEQGAPIAVPERLEGAVTLYPVTNLPVAR----------- 395 Query: 382 QKLETIGSA-SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440 IG A + K+ + A P + + L TS ++T ID Sbjct: 396 ---PAIGDAPAVKVTKTKIRAAEENPELLGV--LLTSKSTSLWIDTRTID---------- 440 Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSG 499 E+ + L + +E KI ++K + +L YG + G ED L SY+ Sbjct: 441 ------PELDAALAAWLSDEAARKIVMDLKVQRKLLRAYGYELAGAVEDPALSSYMCG-- 492 Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN-------------- 545 A + L R E L R IP + + Q E Sbjct: 493 -----FIPTATRKLFSERMEDLAERYLWIPKEPYAQLVFQPEEDEAEPSLFSLPGEAEPV 547 Query: 546 ---------SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 S +I +L LL ++ L VYE ++ P++ V++ ME GI + LL Sbjct: 548 DNLRYFTQISRIIHELARLLHYEMEEHGQLKVYEEIELPLLYVLADMEQAGIAVSDALLT 607 Query: 597 QVSAEISKNLLSLEENIYDLSG---------EKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 ++ S +E+ + G E NL+S KQL +LF L P K K+ Sbjct: 608 ELHDTFSARANQAQESARAIIGGEVATEDGEEPLNLASVKQLQTVLFETLGLPHTRKIKS 667 Query: 648 GQWKTTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 G + T A+ + ++ +P + + +R K+ T + L + RVHT Sbjct: 668 G-YSTDAESVTELLSKISPESDGAAFLGALAAYRDNIKLAQT-VEGLQKAATE-DGRVHT 724 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-------KKLISADYSQIE 754 + + TGRL+S PNLQNIPI+T+ G++IR AFI P + L++ADYSQIE Sbjct: 725 TFQQGAASTGRLSSTAPNLQNIPIRTEEGRRIRGAFIVAPEPIDGVEYEGLLTADYSQIE 784 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 +RI+ H+A L +E D+HR V +E+FGV E V+P+ R K +++ + YG+S Sbjct: 785 MRIMVHLAADEKLIAAYEAGEDLHRYVGSEVFGVAPEDVTPEQRSKVKAMSYGLAYGLSR 844 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 F LA QL I EA + YF RF + ++ Q+GY ETIFGRR +++S Sbjct: 845 FGLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVLKQAHQDGYTETIFGRRRVLPDLDS 904 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 P R ERAA+NAPIQG+AADI + AMI++H+ L + L T+MLLQ+HDE++ EV Sbjct: 905 PNRVRREAAERAALNAPIQGTAADIIKIAMINIHRRLREEGLKTRMLLQVHDEIILEVAT 964 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E A +++V M A +LRVPL V + +WQE Sbjct: 965 GEREAAERVLVEEMSGAA----SLRVPLDVQVGWGKSWQE 1000 >gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217] gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217] Length = 950 Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust. Identities = 294/1000 (29%), Positives = 489/1000 (48%), Gaps = 95/1000 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P+ + G NA+ GF ML +++ + + H V F Sbjct: 9 LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNE+ P YK R PE LL QLPL++ A G+ IE GFE DD+IAT Sbjct: 65 DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + +K G+ ++S D+D QLV T LY D++H +I K+ + P + Sbjct: 125 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIIDKYKVTPAQY 182 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DNIPG+PG+G AA + ++G+L+ I +A I KK E++ + Sbjct: 183 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298 +L+RK+ L DV + + +E L + ++ + K LEF + +RV T++ A Sbjct: 242 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGA-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 K S S + T N+EQ Q Sbjct: 300 ----------------------------KASNTSGAGEST---NNEQNEQD--------- 319 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITD-----TMDAFHSKPIAI 409 S +N T I + +WV+ +++ G + ++D A + Sbjct: 320 SSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGGGSQRHAICGDAVGH 379 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 A + D+ + I ++ TS + +T + + L +F ++EH I H Sbjct: 380 AWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHGY 438 Query: 470 KYDKLVLHRYG-----ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524 K +LH G + + F D L Y+ + + A+ +L E + Sbjct: 439 KE---LLHLLGAVDLDMDLPMF-DTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 494 Query: 525 KSSIPIDKISDSQVQE----HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + ++ D D QV+E H + + +I L + L P + + + ++ P+ V+ Sbjct: 495 QGTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVL 551 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ME TG ++D L + + + +E ++ +G + NL SPKQL +LF + Sbjct: 552 HGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLK 611 Query: 641 SGAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 +TK+G + T A L+ + N N + +L R+++K+K +L + N Sbjct: 612 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNT 670 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753 +R+HT + TGRL+S++PNLQNIP + G++IR F+ + L+S DYSQ+ Sbjct: 671 SDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQV 730 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELRI+A ++ L + F + D H+ VA+ ++ + +++++ R H K +++ + YG+S Sbjct: 731 ELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLS 790 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + LA QL+I EA RYF F +H+Y+E R+ GY ETIFGRR ++ ++ Sbjct: 791 TYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALH 850 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S R ERAA+NAPIQGSAADI + AMI ++L + + ++++LQIHDELV E+ Sbjct: 851 STNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIA 910 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E ++++ ++ME A ++L VPL V+ + ++WQ Sbjct: 911 PGEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 946 >gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ] gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ] Length = 853 Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/506 (41%), Positives = 312/506 (61%), Gaps = 33/506 (6%) Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528 + YD + ++ +R F+DIM+MSY LD+G H S++Q+ L Sbjct: 375 VVYDAKSMMQFFPELRAFDDIMIMSYSLDTGHHDHGFDSMSQRHLG-------------- 420 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 Q I N ++++L ++ KL KL VY L++P++ V+ ++E TGI Sbjct: 421 ----------QIFGITNGCILIRLHRVIMRKLFSAKLYTVYYTLERPLVPVIYELEKTGI 470 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +ID +LLKQ+S E S ++ +LEE I+ L+G KFN++S +QLG +LF ++ K +G Sbjct: 471 KIDTELLKQLSDEFSLSISNLEEEIFGLAGCKFNIASSQQLGKVLFEHMRIGGAKKMPSG 530 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T A+ L + + IL+WR +K+KSTY D+L ++ T RVHT YS+ +T Sbjct: 531 SYCTNAEVLTALALDGVEVADKILKWRHFTKLKSTYTDALVRQVDANTGRVHTKYSMTAT 590 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S PNLQNIPI++ G+KIR AFI+ KLI+ADYSQ+EL+ILAHIA + Sbjct: 591 ATGRLSSSNPNLQNIPIRSKDGEKIRSAFIAEKGHKLIAADYSQMELKILAHIADVKAFR 650 Query: 769 QVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 Q F LDIH + A +IFG E + ++RR AK+INF IIYG+ + LA + I R EA Sbjct: 651 QAFAEGLDIHVVTAQQIFGEYYE-IDYELRRRAKSINFGIIYGMGSYGLARNIGISRREA 709 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 ++Y+++YF +P I Y+E TK + +++GY T FGR+ + INSPK ++ ++ ERAAI Sbjct: 710 SEYVEQYFQYYPEIKRYMETTKAYAKKHGYTITAFGRKCFIEGINSPKRALSSVAERAAI 769 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 NAPIQG+AADI ++AM+ L+D MLLQ+HDEL+ EVPEE + + ++++ M Sbjct: 770 NAPIQGTAADIVKKAMV----RLQDRLTQGTMLLQVHDELLVEVPEEHVLSVARLMKEVM 825 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A + +PL VNI V +NW + Sbjct: 826 ESAVV----FSLPLDVNISVGDNWGD 847 Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 117/300 (39%), Positives = 176/300 (58%), Gaps = 5/300 (1%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M ++ +VD F++RA+YA P LS ++ PV + GF N+L K L A + Sbjct: 1 MMEKKSFVIVDAYGFLFRAYYALPGLSTSYN-FPVGGVYGFINILLKHLSFHD----ADY 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD + FR+ +Y +YK NRPK PE L Q +R A +AF I + E+ +EADD+ Sbjct: 56 LVVVFDSGSKNFRHTMYSEYKTNRPKAPEDLSLQCAPLREAVEAFNIVSEEVLNYEADDV 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IAT V I+S DKDL+QL++ +YD +K + E+V++K+G+ +K++ Sbjct: 116 IATLCTKYASSNVGVRILSADKDLLQLLNDNVQVYDPIKSRYLTNEYVLEKFGVSSDKLL 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ALTGD+ DNIPG+P IG KTAA L+ E+G+L+N+L + ++ QKK R+ + EYA+ A Sbjct: 176 DAMALTGDASDNIPGVPSIGVKTAAKLINEFGSLDNVLNSVEQVAQKKCRDMLTEYADRA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LSR L+ L DV + LE + +L++FL+ E T L +VA AA I+ Sbjct: 236 ILSRDLISLCHDVEVEGDLEKYAKRVPDPVKLMAFLEKYELTSLEGKVAKYCKMVAAPIQ 295 >gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301] gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301] Length = 955 Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust. Identities = 293/1000 (29%), Positives = 488/1000 (48%), Gaps = 95/1000 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P+ + G NA+ GF ML +++ + + H V F Sbjct: 14 LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 69 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNE+ P YK R PE LL QLPL++ A G+ IE GFE DD+IAT Sbjct: 70 DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 129 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + +K G+ ++S D+D QLV T LY D++H ++ K+ + P + Sbjct: 130 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIVDKYKVTPAQY 187 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DNIPG+PG+G AA + ++G+L+ I +A I KK E++ + Sbjct: 188 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 246 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298 +L+RK+ L DV + + +E L + ++ + K LEF + +RV T++ A Sbjct: 247 VKLNRKVNALVRDVDLGVDIEDLTFGAVDVAQIDALFKELEFGPRTRSRVLKTFNTGA-- 304 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 K S S + T N+EQ Q Sbjct: 305 ----------------------------KVSNTSGAGEST---NNEQDKQD--------- 324 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMDAFH-----SKPIAI 409 S +N T I + +WV+ +++ G + ++D D + Sbjct: 325 SNLDLNLPEPTSITAPEQFDEWVKAHRAEVKVPGEIADFTVSDYGDGSQRHTVCGDAVGH 384 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 A + D+ + I ++ TS + +T + + L +F ++EH I H Sbjct: 385 AWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQLARFLKSEHSRTIVHGY 443 Query: 470 KYDKLVLHRYG-----ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524 K +LH G + + F D L Y+ + + A+ +L E + Sbjct: 444 KE---LLHLLGAVDLDMDLPMF-DTKLAGYLTQPDFHADSLKQAAEHFLDLHFTETEQPS 499 Query: 525 KSSIPIDKISDSQVQE----HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + ++ D D QV+E H + + +I L + L P + + + ++ P+ V+ Sbjct: 500 QGTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVL 556 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ME TG ++D L + + + +E ++ +G + NL SPKQL +LF + Sbjct: 557 HGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLK 616 Query: 641 SGAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 +TK+G + T A L+ + N N + +L R+++K+K +L + N Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNT 675 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753 +R+HT + TGRL+S++PNLQNIP + G++IR F+ + L+S DYSQ+ Sbjct: 676 SDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQV 735 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELRI+A ++ L + F + D H+ VA+ ++ + +++++ R H K +++ + YG+S Sbjct: 736 ELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLS 795 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + LA QL+I EA RYF F +H+Y+E R+ GY ETIFGRR ++ ++ Sbjct: 796 TYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALH 855 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S R ERAA+NAPIQGSAADI + AMI ++L + + + ++LQIHDELV E+ Sbjct: 856 STNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSCIILQIHDELVVEIA 915 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E ++++ ++ME A ++L VPL V+ + ++WQ Sbjct: 916 PGEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 951 >gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] Length = 899 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 224/620 (36%), Positives = 358/620 (57%), Gaps = 21/620 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ +Y I + + + L+ + T ++D H+ + I+ ++ Sbjct: 294 IDRAAYRAITTAEALDVLLLALKAADVVALDTETTSLDPLHADLVGIS---------CAW 344 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 + + + V G + +L+ L+ + E+ K+ N KYD V R+GI Sbjct: 345 QAGGDYQAVYVPVGHRDAGPQLDRQTVLTALRPWLEDPQAAKLAQNAKYDWRVFWRHGIH 404 Query: 483 MRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQV 538 G D +L SYVL+S + HD+ ++A+++L + +E++ KS+ + ++ Sbjct: 405 PAGLARDTLLESYVLNSSHNGHDLDTLAERYLQHQNIRYEEVVGKGKSARNFADVPVAEA 464 Query: 539 QEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 +A E+++V L++ LL P+ E L V ++ P++ V+++ME G++ID+ L+ Sbjct: 465 LPYAAEDADVCLRVDALLWPRFASEPGLRRVLMEIEMPLVLVLARMEEAGVKIDRAQLEV 524 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 +S E+S+++ E+ + L+G+ FNL+SPKQ+ +ILF K++ P KT GQ T L Sbjct: 525 LSTELSRDMADCEQKAFVLAGQSFNLNSPKQIQEILFDKMRLPVLKKTPGGQPSTNEDVL 584 Query: 658 EQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 Q+ D P + IL++R ++K+K+TYAD+LP IN T RVHT + A TGRL+S Sbjct: 585 AQLAVHADLP--RLILDYRGMAKLKNTYADALPQMINPDTGRVHTHFQQAVAATGRLSSN 642 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T+ G++IR+AF++ L+SADYSQIELRILAH++ L Q F D Sbjct: 643 DPNLQNIPVRTEQGRRIRQAFVAEEGHWLLSADYSQIELRILAHLSGDARLLQAFAEGED 702 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH + AAE+F + E V RR AK INF +IYG +P+ LA QL I ++ A Y+ RYF Sbjct: 703 IHAVTAAEVFDLAPEDVDSAARRAAKAINFGLIYGQTPYGLAQQLGIDQAAARQYMDRYF 762 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+ G+ EY+ +T+ ++ GYVET+FGRR++ EI S + R ERAAINAP+QG+A Sbjct: 763 ERYLGVLEYMAQTRALAKKQGYVETLFGRRLYVPEIRSSNPARRTYAERAAINAPMQGTA 822 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AMI+V L++ +M+LQ+HDEL+ EVPE + A + ME Sbjct: 823 ADLIKMAMIAVDAWLQERPERGRMILQVHDELILEVPEAGLEAAKSALKARMEGVA---- 878 Query: 957 NLRVPLKVNIKVSNNWQEEN 976 L VPL V + + +W E + Sbjct: 879 ELAVPLLVGLGIGKHWDEAH 898 Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 111/252 (44%), Positives = 152/252 (60%), Gaps = 9/252 (3%) Query: 8 FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 LVD SSF+YRAF+A P L R D LP AI G NML +LL KE + VIFD Sbjct: 7 ILVDASSFLYRAFHALPDL-RAPDNLPTGAIYGVANMLRRLL----KEHPSDEIIVIFDA 61 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 P TFR+ +YP+YKA+RP +PE L Q+PL+ +A G+P + EADD+I T Sbjct: 62 PGGTFRDRLYPEYKAHRPAMPEELRVQVPLLHDWIRATGLPLVIEPDVEADDVIGTLARE 121 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 A + V I++ DKD+ QLV+ L DT+K + D V +++G+PPE++ L AL G Sbjct: 122 AAPDQ-QVLIVTGDKDMAQLVNSRVRLIDTMKGIETDAAGVEERFGVPPERIADLLALIG 180 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247 D +DNIPG+PG+G KTAA L +YG+L+ +L +A I K E + A LSR L Sbjct: 181 DKVDNIPGVPGVGPKTAARWLTQYGDLDGVLAHAGDIGGKV-GEALRASAHYLPLSRDLA 239 Query: 248 MLRTDVPITIPL 259 +R D +T+P+ Sbjct: 240 TIRCD--LTLPV 249 >gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 950 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 294/999 (29%), Positives = 487/999 (48%), Gaps = 93/999 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P+ + G NA+ GF ML +++ + + H V F Sbjct: 9 LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNE+ P YK R PE LL QLPL++ A G+ IE GFE DD+IAT Sbjct: 65 DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + +K G+ ++S D+D QLV T LY D++H +I K+ + P + Sbjct: 125 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIIDKYKVTPAQY 182 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DNIPG+PG+G AA + ++G+L+ I +A I KK E++ + Sbjct: 183 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298 +L+RK+ L DV + + +E L + ++ + K LEF + +RV T++ A Sbjct: 242 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGA-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 K S S + T N+EQ Q Sbjct: 300 ----------------------------KASNTSGAGEST---NNEQNEQD--------- 319 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIAI 409 S +N T I + +WV+ +++ G + ++D D A + Sbjct: 320 SSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVGH 379 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 A + D+ + I ++ TS + +T + + L +F ++EH I H Sbjct: 380 AWTVAAWGDERPGRATAQAIAVATATSA-AIVSLPITDTLRAQLAQFLKSEHSRTIVHGY 438 Query: 470 KYDKLVLHRYGISMRGFE----DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 K +LH G + D L Y+ + + A+ +L E + + Sbjct: 439 KE---LLHLLGAVDLDLDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQ 495 Query: 526 SSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 ++ D D QV+E E + +I L + L P + + + ++ P+ V+ Sbjct: 496 GTLDFD---DDQVEEDPNELRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 552 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME TG ++D L + + + +E ++ +G + NL SPKQL +LF + Sbjct: 553 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGIEINLQSPKQLQKVLFEDMGLKP 612 Query: 642 GAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 +TK+G + T A L+ + N N + +L R+++K+K +L + N Sbjct: 613 TKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNTS 671 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIE 754 +R+HT + TGRL+S++PNLQNIP + G++IR F+ + L+S DYSQ+E Sbjct: 672 DERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVE 731 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LRI+A ++ L + F + D H+ VA+ ++ + +++++ R H K +++ + YG+S Sbjct: 732 LRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLST 791 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 + LA QL+I EA RYF F +H+Y+E R+ GY ETIFGRR ++ ++S Sbjct: 792 YGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHS 851 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 R ERAA+NAPIQGSAADI + AMI ++L + + ++++LQIHDELV E+ Sbjct: 852 TNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAP 911 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E ++++ ++ME A ++L VPL V+ + ++WQ Sbjct: 912 GEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 946 >gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705] gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705] Length = 955 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 294/999 (29%), Positives = 487/999 (48%), Gaps = 93/999 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P+ + G NA+ GF ML +++ + + H V F Sbjct: 14 LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 69 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNE+ P YK R PE LL QLPL++ A G+ IE GFE DD+IAT Sbjct: 70 DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 129 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + +K G+ ++S D+D QLV T LY D++H +I K+ + P + Sbjct: 130 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIIDKYKVTPAQY 187 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DNIPG+PG+G AA + ++G+L+ I +A I KK E++ + Sbjct: 188 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 246 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298 +L+RK+ L DV + + +E L + ++ + K LEF + +RV T++ A Sbjct: 247 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGA-- 304 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 K S S + T N+EQ Q Sbjct: 305 ----------------------------KASNTSGAGEST---NNEQNEQD--------- 324 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIAI 409 S +N T I + +WV+ +++ G + ++D D A + Sbjct: 325 SSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVGH 384 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 A + D+ + I ++ TS + +T + + L +F ++EH I H Sbjct: 385 AWTVAAWGDERPGRATAQAIAVATATSA-AIVSLPITDTLRAQLAQFLKSEHSRTIVHGY 443 Query: 470 KYDKLVLHRYGISMRGFE----DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 K +LH G + D L Y+ + + A+ +L E + + Sbjct: 444 KE---LLHLLGAVDLDLDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQ 500 Query: 526 SSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 ++ D D QV+E E + +I L + L P + + + ++ P+ V+ Sbjct: 501 GTLDFD---DDQVEEDPNELRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 557 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME TG ++D L + + + +E ++ +G + NL SPKQL +LF + Sbjct: 558 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGIEINLQSPKQLQKVLFEDMGLKP 617 Query: 642 GAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 +TK+G + T A L+ + N N + +L R+++K+K +L + N Sbjct: 618 TKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNTS 676 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIE 754 +R+HT + TGRL+S++PNLQNIP + G++IR F+ + L+S DYSQ+E Sbjct: 677 DERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQVE 736 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LRI+A ++ L + F + D H+ VA+ ++ + +++++ R H K +++ + YG+S Sbjct: 737 LRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLST 796 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 + LA QL+I EA RYF F +H+Y+E R+ GY ETIFGRR ++ ++S Sbjct: 797 YGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALHS 856 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 R ERAA+NAPIQGSAADI + AMI ++L + + ++++LQIHDELV E+ Sbjct: 857 TNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAP 916 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E ++++ ++ME A ++L VPL V+ + ++WQ Sbjct: 917 GEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 951 >gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68] gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68] Length = 955 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 294/1000 (29%), Positives = 488/1000 (48%), Gaps = 95/1000 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P+ + G NA+ GF ML +++ + + H V F Sbjct: 14 LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 69 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNE+ P YK R PE LL QLPL++ A G+ IE GFE DD+IAT Sbjct: 70 DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLA 129 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + +K G+ ++S D+D QLV T LY D++H +I K+ + P + Sbjct: 130 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIIDKYKVTPAQY 187 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DNIPG+PG+G AA + ++G+L+ I +A I KK E++ + Sbjct: 188 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKKG-ESLRANIDQ 246 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAAN 298 +L+RK+ L DV + + +E L + ++ + K LEF + +RV T++ A Sbjct: 247 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTKSRVLKTFNTGA-- 304 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 K S S + T N+EQ Q Sbjct: 305 ----------------------------KASNTSGAGEST---NNEQNEQD--------- 324 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQ----KLETIGSASFKIITDTMD-----AFHSKPIAI 409 S +N T I + +WV+ +++ G + ++D D A + Sbjct: 325 SSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSDYGDGSQRHAICGDAVGH 384 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 A + D+ + I ++ TS + +T + + +F ++EH I H Sbjct: 385 AWTVAAWGDERPGRATAQAIAVATATSA-AIVPLPITDTLRAQFARFLKSEHSRTIVHGY 443 Query: 470 KYDKLVLHRYG-----ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524 K +LH G + + F D L Y+ + + A+ +L E + Sbjct: 444 KE---LLHLLGAVDLDMDLPMF-DTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPS 499 Query: 525 KSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + ++ D D QV+E E + +I L + L P + + + ++ P+ V+ Sbjct: 500 QGTLDFD---DDQVEEDPNELRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVL 556 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ME TG ++D L + + + +E ++ +G + NL SPKQL +LF + Sbjct: 557 HGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEINLQSPKQLQKVLFEDMGLK 616 Query: 641 SGAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 +TK+G + T A L+ + N N + +L R+++K+K +L + N Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQI-VQTLIDATNT 675 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753 +R+HT + TGRL+S++PNLQNIP + G++IR F+ + L+S DYSQ+ Sbjct: 676 SDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRGVFVPGEGYEALMSCDYSQV 735 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELRI+A ++ L + F + D H+ VA+ ++ + +++++ R H K +++ + YG+S Sbjct: 736 ELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAYGLS 795 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + LA QL+I EA RYF F +H+Y+E R+ GY ETIFGRR ++ ++ Sbjct: 796 TYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVANAREKGYTETIFGRRRYFPALH 855 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S R ERAA+NAPIQGSAADI + AMI ++L + + ++++LQIHDELV E+ Sbjct: 856 STNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIA 915 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E ++++ ++ME A ++L VPL V+ + ++WQ Sbjct: 916 PGEGDQVTELVRNAMEHA----VDLAVPLDVSCGIGSDWQ 951 >gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307] gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307] Length = 986 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 326/1025 (31%), Positives = 507/1025 (49%), Gaps = 125/1025 (12%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L LVDG S +R+FYA DG+P + GF L LL N + S+ Sbjct: 28 LLLVDGHSLAFRSFYAFSKGGEGGLSTQDGIPTSVTYGF---LKALLDNCK--SLKPQGV 82 Query: 63 VI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120 VI FD TFR++ YKANR P+ + L + IP GFEADD+ Sbjct: 83 VIAFDTAEPTFRHKADETYKANRDVAPDHFFQDVDNLQEILKGCLDIPLCLAPGFEADDV 142 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170 + T EG+ V I+S D+DL QLV LY + +I E V+ Sbjct: 143 LGTLANRGANEGWRVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKSSGPTEIREEGVVS 202 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K G+ P K+V L+ALTGDS DNIPG+ G+G KTA LL E G+L+ + + K Sbjct: 203 KLGVMPNKVVDLKALTGDSSDNIPGVRGVGPKTAINLLSENGDLDGVYKALEALSDPKAN 262 Query: 231 ENILEYA---------ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 L+ A E A SR L + D+P+ ED PRL L +E Sbjct: 263 SGALKGALKGKLSNDKENAYRSRMLAEILIDIPLP--------ED---PRL--GLGLVEL 309 Query: 282 TKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKI 341 L R +E + L+ +++ A ++ T + LS+ S+ Sbjct: 310 GALRQR-----------LEELELNSLQRQSEKFAELFSAAGQLSLDTGSSADLSEALSEP 358 Query: 342 NSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT--- 398 SE TP + P+ I ++ +Q V +L+ + + + DT Sbjct: 359 ESE-TP-----------TTPPLKPQ---LITSSAQLQALVSQLQQRSADAPAVAIDTETT 403 Query: 399 -MDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457 ++ F ++ + + + +D ++ I I S + G+ L E+L L + Sbjct: 404 DLNPFRAQLVGLGFCWGEADNDLAY----IPIGHS-----GAEGQLPLA-EVLEALAPWL 453 Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY- 515 + K N KYD+LVL R+G+ + G D +L Y+ D+ + H++ +AQ+ + Sbjct: 454 ASPTQRKCLQNAKYDRLVLLRHGLELNGVAVDTLLADYLRDA-SARHNLEELAQRHYGFR 512 Query: 516 --TRKEILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEKLLHVY 569 + +++ + + +PI+ + ++ + ++ +L + L +L + E L + Sbjct: 513 PTSFSDLVGKGQTFADVPIEAAA-----QYCGMDVHLTYRLAIDLVQQLEQLGEALPQLL 567 Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629 L+ P+ V++QME TGI+ID L+++ + L LE+ +GE+FNL+SPKQL Sbjct: 568 SELELPLEPVLAQMEATGIRIDVPYLQELGQSMGDKLQQLEQQAIAAAGEEFNLASPKQL 627 Query: 630 GDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 G++LF L KTKTG W T A LE++ +P++ +LE R LSK+KSTY D+ Sbjct: 628 GELLFNTLGLDRKKSRKTKTG-WSTDAAVLEKLEDA-HPVVPLVLEHRTLSKLKSTYVDA 685 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747 LP + T RVHT ++ A T TGRL+S PNLQNIP++T ++IR+AF+ L+S Sbjct: 686 LPQLVESETGRVHTDFNQAVTATGRLSSSNPNLQNIPVRTAYSRQIRKAFLPQKDWTLLS 745 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIELRIL H+ L + + + D+H + A + ++ +VS + RR KTINF Sbjct: 746 ADYSQIELRILTHLCGEEALVEAYNSGDDVHALTARLL--LDKSEVSDEERRLGKTINFG 803 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR- 866 +IYG+ R A + ++EA +++ RY R+P + ++E + GYVET+ GRR Sbjct: 804 VIYGMGAQRFARATGVSQAEAKEFLSRYKQRYPKVFAFLEWQERLALSRGYVETLMGRRR 863 Query: 867 -IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 H+D EI+ + + + RAA NAPIQGS+ADI ++AM+ + + Sbjct: 864 PFHFDPQGLGRLKGTDPAEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKKAMVDLQQ 923 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 L D +L ++LLQ+HDELV E + T + +ME+A ++L VPL V I Sbjct: 924 LLLDQQLPARLLLQVHDELVLECAPNALATVQSSVQRTMEQA----VSLSVPLVVEIGSG 979 Query: 970 NNWQE 974 NW E Sbjct: 980 PNWME 984 >gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] Length = 920 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 219/532 (41%), Positives = 331/532 (62%), Gaps = 12/532 (2%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIAS 507 ++ K +ENE +K+G NIKYD VL YGI ++G D M+ YVL H++ Sbjct: 393 LVKIFKPLYENEEIVKVGQNIKYDMEVLRNYGIELKGPMFDTMIAHYVLQP-ELRHNMDY 451 Query: 508 IAQKWLSYT----RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 +A+ +L+Y K I + K+ + +S + V +A E++++ LQL L PKL Sbjct: 452 MAEVYLNYQTIHIEKLIGERGKNQKNMRDLSPTDVYLYACEDADITLQLKNALEPKLKEA 511 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 + ++ +++ P+++V+++ME+ G++ID + LK+ S +K +L LE I++L+GE FN+ Sbjct: 512 GVADLFYQMEMPLVNVLAEMEMNGVRIDTEALKETSENFTKRMLDLEHQIHELAGESFNV 571 Query: 624 SSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 SSPKQ+GDILF KL+ KTKTGQ+ T+ ++L++ G N I+ IL++R L K+ Sbjct: 572 SSPKQVGDILFGKLQIAEKPKKTKTGQFVTSEEELQKYAAG-NEIVTLILDYRGLKKLLG 630 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D+LP IN RT +HT ++ T TGRL+S +PNLQNIP++ + G++IR+ FI Sbjct: 631 TYVDALPKLINPRTGHIHTSFNQTVTATGRLSSSDPNLQNIPVRGEDGKEIRKCFIPEDG 690 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 SADYSQIELR++AH++ + + F++ DIH AA+I+G +++ V+ R AK Sbjct: 691 CLFFSADYSQIELRVMAHLSGDKHMIEAFQHGYDIHAATAAKIYGKDMKDVTRDERTKAK 750 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 NF IIYGI+ F LA +L I R+EA I YF FP +++Y+E+ K R+ GYVET Sbjct: 751 RANFGIIYGITVFGLAERLGIDRNEAKQLIDGYFTTFPQVYDYMEQAKATAREQGYVETF 810 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 F RR + +INS +++R ER AINAPIQGSAADI + AMI ++K + + +KM+L Sbjct: 811 FHRRRYLPDINSRNATVRGFAERNAINAPIQGSAADIIKVAMIRIYKRFKRENIQSKMIL 870 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q+HDEL F V EE +I++ M+ A LRVPL + NW E Sbjct: 871 QVHDELNFSVLPEEKEQVERIVMEEMQNA----YPLRVPLIADGGWGKNWLE 918 Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 167/291 (57%), Gaps = 15/291 (5%) Query: 5 NHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + LFL+D + IYR++YA P ++ K GL +AI GFCN L ++L KE+ ++ Sbjct: 2 DKLFLLDAYALIYRSYYAFINNPRINSK--GLNTSAIMGFCNTLNEVLT---KEN-PTYI 55 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD+ +TFRN+ +P YKA R PE + +P+++ +A+ IP++++ GFEADD+I Sbjct: 56 GVAFDH-GLTFRNDAFPAYKAQREATPEDIKKAVPIIKQILEAYHIPSLQVDGFEADDVI 114 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI-PPE 177 T + K+G +++ DKD QLV +Y E + + + K+ I P Sbjct: 115 GTLAMKSGKKGIDTYMLTPDKDYGQLVRENVFMYRPRHGGGYETLGEKEICDKYNITTPL 174 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ L AL GDS DN PG PG+G KTA+ L+ ++G++E +L S IK K RE + Sbjct: 175 QVIDLLALMGDSADNFPGCPGVGEKTASKLINQFGSIEELLKRTSEIK-GKLREKVENAT 233 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + ++S+ L +RTDVPI + LE L L+ + +L LEF NR+ Sbjct: 234 DDIKMSQFLATIRTDVPIELNLEDLKLKQPDENKLAEIFTELEFKTFANRI 284 >gi|57238779|ref|YP_179915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden] gi|58578703|ref|YP_196915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden] gi|57160858|emb|CAH57760.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden] gi|58417329|emb|CAI26533.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Welgevonden] Length = 865 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 218/527 (41%), Positives = 313/527 (59%), Gaps = 40/527 (7%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509 L +K F +H LK+ +++K ++ ++ F+DI++MSY LD+G H + +I Sbjct: 369 LDLIKPLFSLDHILKVMYDVKTLFKIIQE-DTNITAFDDILIMSYSLDAGLHDHTLKNII 427 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV----ILQLWLLLRPKLIVEKL 565 + + +H I N N+ +L L LR L +L Sbjct: 428 IR-------------------------NIDKHDITNENITASTLLSLHTALRRNLFTNQL 462 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 +Y R++KP+I+V+ ME GI ID +L ++S+ S + LEE IY LSGE+FN++S Sbjct: 463 CTIYYRIEKPLINVLHNMEKIGIMIDGSILDKLSSTFSDKISVLEEKIYKLSGEEFNIAS 522 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 +QL ILF K+ G K +G + T A+ L ++ I IL+WR +K+K+TY Sbjct: 523 SRQLSTILFDKMGIKKGKKLSSGTYSTDAEVLHELAFNGVEIADEILKWRHFTKLKNTYT 582 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745 D L I+ T RVHTFYS+ ST+TGRL+S PNLQNIPI+++ G IR AFI+ KL Sbjct: 583 DVLAKQIDNNTSRVHTFYSMTSTVTGRLSSSNPNLQNIPIRSEEGNAIRNAFIAKSGYKL 642 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 ISADYSQIELRI+AHIA + F DIH + A +IF N + + ++RR AK+IN Sbjct: 643 ISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIF--NTQNIDKKLRRKAKSIN 700 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F IIYGISPF LA QL I RSEA+ +I+ YF +P I YIE K + R +GY T+FGR Sbjct: 701 FGIIYGISPFGLAKQLGITRSEASKHIENYFKSYPEIKSYIEDIKVYARTHGYTRTVFGR 760 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 + +INS ++RN +ERAA+NAP+QG++ADI + +MI + L+ M+LQ+H Sbjct: 761 KCFIKDINSNNHALRNFSERAAVNAPLQGTSADIIKMSMIHLFDRLK----TGYMILQVH 816 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+FEVPE+ + ++I ME + L VPLKV+I + +NW Sbjct: 817 DELLFEVPEDHVDNTVKLIKEVMEGI----VKLSVPLKVDITIGDNW 859 Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 115/292 (39%), Positives = 176/292 (60%), Gaps = 6/292 (2%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D ++RA+YA P LS +G+P+ + GF NML K ++ A++ V FD Sbjct: 11 IIDAYGLLFRAYYALPHLSTS-NGVPIGGVYGFINMLLKYIE----VHTANYLVVAFDTG 65 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 FR++IYP YK+NR K+PE L+ Q PL+R A A I E+ G+EADD+IAT + Sbjct: 66 GKNFRHDIYPQYKSNRIKLPEDLISQFPLLREAVNALNISYEEVAGYEADDVIATLSKNY 125 Query: 129 EK-EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 K +G VT++++DKDL+QL+ ++D VK + I + V K+GI K++ +LTG Sbjct: 126 SKFDGIKVTVVTSDKDLLQLLEHNIHIFDPVKNKYIVEDDVQDKFGISSSKLLDFLSLTG 185 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247 D+ DNIPG+PGIG KTAA LL +G+L+N+L I++ K RE+I++Y + A LSR+L+ Sbjct: 186 DTSDNIPGVPGIGIKTAAKLLNNFGSLDNLLSQPHAIEKNKCRESIIKYQDQAILSRQLL 245 Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 L V + +E + +L+ FLK E LIN++ + DA + Sbjct: 246 TLCDTVNLDNNIEKYRSRIPDTQKLVKFLKKYELQSLINKIGKIFKTDAFTV 297 >gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15] gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15] Length = 892 Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust. Identities = 227/623 (36%), Positives = 358/623 (57%), Gaps = 23/623 (3%) Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 S+ ++ + Y + ++ + + L+ G+ + + T +++ ++ + I++S D Sbjct: 284 SEATLSTEQYRTVATEEEFEALLADLKAAGTFAVDLETTSLNPLEAEIVGISLSYRDH-- 341 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 E +I + H + + + +L L + K+G N+KYD V R Sbjct: 342 ------EACYIPVG-HFYLGAP-EQLPRRRVLDALTPLLIDPKIRKVGQNLKYDYQVFRR 393 Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIA-----QKWLSYTRKEILKSRKSSIPIDK 532 +GI + G + D M+ SY+L+ RS H + S+A K +SY +E+ K + + Sbjct: 394 HGIELGGVWCDTMVASYLLNPVRSGHGLDSLAVEHLDHKMISY--EEVAGKGKEQVNFAQ 451 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + ++ E+S+ L L P++ V + ++ ++ P++ ++++ME+ G+++D Sbjct: 452 VPVEKASTYSCEDSDAAWLLHRLFLPRVAVWGMERLFFDVEMPLVPILAEMELAGVKLDL 511 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ-WK 651 LL ++SA K L LE I L+ E FNL+SPKQLG++LF KLK P+G KTKT W Sbjct: 512 PLLGELSAGFGKQLAELEGRITGLAPEPFNLNSPKQLGEVLFEKLKLPTGKKTKTKTGWS 571 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T ++LE++ + I IL++R L+K+KSTY D+LP + T RVHT Y+ T TG Sbjct: 572 TNVEELERLAEAGHEIAALILQYRGLAKLKSTYTDALPKLVQPATGRVHTSYNQTVTNTG 631 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S EPNLQNIP++T+ G++IRRAFI+ L+SADYSQIELR+LAH ++ F Sbjct: 632 RLSSSEPNLQNIPVRTEEGRRIRRAFIAEEGHLLLSADYSQIELRVLAHFSEDRVFCDAF 691 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIH AAE+FG+ E V+P+MRR AK INF +IYG F LA QL I A ++ Sbjct: 692 AKDEDIHTRTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSLAKQLGIATKVAREF 751 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I YF R PG +++ + G+V T+ GRR+ +I S +IR +R A+N P Sbjct: 752 IDNYFARHPGARAFLDGCVREAEEKGHVTTLLGRRLPIPDIKSANGNIRAFAQRNAVNYP 811 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGSAADI + AM+ V + + +++++Q+HDELVFEVP+ E+ Q++ ME A Sbjct: 812 IQGSAADIIKEAMVKVTARMRRDVVGSRLIMQVHDELVFEVPKGEVVAMEQLVRREMEHA 871 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 ++LRVPLKV+I NW E Sbjct: 872 ----VSLRVPLKVDINHGGNWSE 890 Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 120/290 (41%), Positives = 177/290 (61%), Gaps = 6/290 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L+L+DGSS+IYRA+YA LS G P NA+ GF ML K++++ R + H Sbjct: 1 MTGKQTLYLIDGSSYIYRAYYAIRHLSSPK-GFPTNALYGFTQMLLKVIKDRRPD----H 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+FD TFR ++YPDYKANR +P+ L+PQ+ ++ +AF IP +E+ G+EADDI Sbjct: 56 IAVVFDVGRTTFRTDLYPDYKANRSAMPDDLVPQIAPIKEMVRAFNIPVLELAGYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T E+ G +++ DKDLMQ+VS L DT+KE+ I V +++G+ PE ++ Sbjct: 116 IGTIARECEERGMEAVVVTGDKDLMQIVSERVTLLDTMKEKASGIPDVQERFGVGPEGVI 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + L GD+ DNIPG+PGIG KTA L+QE+G+L+ +L A +K K E + E+A+ A Sbjct: 176 DILGLAGDTSDNIPGVPGIGEKTAIKLIQEFGSLDTLLERAGEVKGKT-GEKLREFADQA 234 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 RLSR+L + DVP+ + RL +K FT L+ + + Sbjct: 235 RLSRQLATIVRDVPMAFDFAAFAASSPDNRRLAELIKEYGFTTLMKELTS 284 >gi|297243661|ref|ZP_06927592.1| DNA polymerase I [Gardnerella vaginalis AMD] gi|296888412|gb|EFH27153.1| DNA polymerase I [Gardnerella vaginalis AMD] Length = 1025 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 303/1057 (28%), Positives = 511/1057 (48%), Gaps = 145/1057 (13%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A + G N+I GF ML ++++ + + +A + F Sbjct: 20 LLVVDGHSLAFRAFFAISADNFSTRSGQATNSIWGFITMLSQVVKKEKPDRLA----IAF 75 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRN + P YK R P+ LL QLP+++ +A GI IE G+E DD+I T Sbjct: 76 DVKGGTFRNTMLPQYKGTRDAAPQELLSQLPIIQQMLKALGITYIEKPGYEGDDVIGTLA 135 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY-----DTVKEEKIDIEHVIKKWGIPPEKM 179 + G+ ++S D+D QL+ T LY +KE +D + V +K+ + P++ Sbjct: 136 TMGANAGYRTLVLSGDRDAFQLIDDNITVLYPGQHFKDLKE--MDKDAVFEKYHVTPKQY 193 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236 L AL G++ DNIPG+PG+G AA + ++G+LENI+ +++ I KK RENI Sbjct: 194 PDLAALRGETADNIPGVPGVGDGYAAKWINQFGSLENIIEHSNEISGKKGEALRENI--- 250 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR--------- 287 + RL+RK+ L D+ + + ++ L D + +L L LEF +L R Sbjct: 251 -DQVRLNRKVNALVCDLDLGVTVDDLCFGDVDAAKLGILLSQLEFGELKKRKILKTFSNG 309 Query: 288 ------------VATTYDCDAANIEPVVLDINTTENKGI-------------AIETEIDR 322 ++TY+ +A N E V D + + + +E I+ Sbjct: 310 TQQSIENNMRIMFSSTYEGNANNDELVQGDQSNIDAENFQEMLASIDLHHVKTVEDFINW 369 Query: 323 DTTIKTSQFSSLSDQTSKINSEQTPQKLFLER--LQKLSQYPINNDS---YTKIVNTKDI 377 + ++ + ++ + + N+E T +L E ++LS I N+S I+ +++ Sbjct: 370 ENSVSSLLYTEIKKDSK--NTEDTFDQLSSEEENFEELSSEKIINNSRKCAEPILKNQEV 427 Query: 378 QQWVQKLETIGSASFKIITDTMDAFHS-KPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436 + + + F++ D++ + K + + S L D Sbjct: 428 VIYAHECKKNSKHHFELTADSLIILVAHKAVLLYASDLQSAD------------------ 469 Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE--------- 487 + +L L+KF + + + H+ K +L S++ F+ Sbjct: 470 ----------RALLEMLRKFLQKNSSITVLHDYKKHLGLLK----SLKLFDSNNSFGTPL 515 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAIE 544 D L SY+L+ + + ++A+ +L E + ++ +D + D + E Sbjct: 516 LDTRLASYLLEPDFRAETLENMAEHYLDIQSDEDNLGENEAKQGELDLLIDDETPASEEE 575 Query: 545 NSNVILQL--WLLLRPKLIVEKL-LHVYERLDK------------PMIDVVSQMEITGIQ 589 N+ Q LR L++ L LH LD P+ V+ ME G Sbjct: 576 NNEKQTQAREAKFLRTALLIRLLALHFASTLDDRKQTGLMTDLEMPISRVLRGMEDVGAA 635 Query: 590 ID----QDLLKQVSA--EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 +D +LKQ SA E ++N+ + ++G NL SPKQL ILF Sbjct: 636 VDMQRLSGMLKQFSADAEFAQNM------AWKVAGSSVNLQSPKQLQQILFEHFGLKPTR 689 Query: 644 KTKTGQWKTTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 +TK G + T A+ L+ + +P + +L+ R+ +K+K SL + + + Sbjct: 690 RTKNGSYTTNAEALQAMYVKLDPEEPASQFLGALLKHRETNKLKQI-VQSLIDAAHYDDR 748 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELR 756 R+HT + TGRL+S +PNLQNIP + G++IR AFI + L+S DYSQ+ELR Sbjct: 749 RIHTTFEQTIAATGRLSSADPNLQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVELR 808 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 I+AH + L + F + D H+ VA+ ++ + +E+V+P R H K +++ + YG+S + Sbjct: 809 IMAHASHDKTLIEAFRSGADFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAYGLSTYG 868 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 LA QL I +EA +YF F +H+Y+E + ++ GY ET+FGRR ++ +++S Sbjct: 869 LAKQLSISPAEAEMLKNKYFDTFGNVHDYLESLVSKAKELGYTETMFGRRRYFPQLSSNN 928 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 + R ER A+NAPIQG+AADI + AM+ V L + K+ ++++LQIHDEL+ E+ E Sbjct: 929 RASREAAERGALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEISHGE 988 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 I+ +ME A ++L VPL V+ V +WQ Sbjct: 989 QEQVENIVRKAMENA----VHLDVPLNVSTGVGVDWQ 1021 >gi|58616765|ref|YP_195964.1| DNA polymerase I [Ehrlichia ruminantium str. Gardel] gi|58416377|emb|CAI27490.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Gardel] Length = 860 Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust. Identities = 218/527 (41%), Positives = 311/527 (59%), Gaps = 40/527 (7%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509 L +K F +H LK+ +++K ++ ++ F+DI++MSY LD G H + +I Sbjct: 364 LDLIKPLFSLDHILKVMYDVKTLFKIIQE-DTNITAFDDILIMSYSLDVGLHDHTLKNII 422 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV----ILQLWLLLRPKLIVEKL 565 + +H I N N+ +L L LR L +L Sbjct: 423 IR-------------------------NTDKHDITNENITASTLLSLHTALRRNLFTNQL 457 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 +Y R++KP+I+V+ ME GI ID +L ++S+ S + LEE IY LSGE+FN++S Sbjct: 458 CTIYYRIEKPLINVLHNMEKIGIMIDGSILDKLSSTFSDKISVLEEKIYKLSGEEFNIAS 517 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 +QL ILF K+ G K +G + T A+ L ++ I IL+WR +K+K+TY Sbjct: 518 SRQLSTILFDKMGIKKGKKLSSGTYSTDAEVLHELAFNGVEIADEILKWRHFTKLKNTYT 577 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745 D L I+ T RVHTFYS+ ST+TGRL+S PNLQNIPI+++ G IR AFI+ KL Sbjct: 578 DVLAKQIDNNTSRVHTFYSMTSTVTGRLSSSNPNLQNIPIRSEEGNAIRNAFIAKSGYKL 637 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 ISADYSQIELRI+AHIA + F DIH + A +IF N + + ++RR AK+IN Sbjct: 638 ISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIF--NTQNIDKKLRRKAKSIN 695 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F IIYGISPF LA QL I RSEA+ +I+ YF +P I YIE K + R +GY T+FGR Sbjct: 696 FGIIYGISPFGLAKQLGITRSEASKHIENYFKSYPEIKSYIEDIKVYARTHGYTRTVFGR 755 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 + +INS ++RN +ERAA+NAP+QG++ADI + +MI + L+ M+LQ+H Sbjct: 756 KCFIKDINSNNHALRNFSERAAVNAPLQGTSADIIKMSMIHLFDRLK----TGYMILQVH 811 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+FEVPE+ + ++I ME + L VPLKV+I + +NW Sbjct: 812 DELLFEVPEDHVDNTVKLIKEVMEGI----VKLSVPLKVDITIGDNW 854 Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 114/292 (39%), Positives = 176/292 (60%), Gaps = 6/292 (2%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D ++RA+YA P LS +G+P+ + GF NML K ++ A++ V+FD Sbjct: 6 IIDAYGLLFRAYYALPNLSTS-NGVPIGGVYGFINMLLKYIE----VHTANYLVVVFDTG 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 FR++IYP YK+NR K+PE L+ Q PL+R A A I E+ G+EADD+IAT + Sbjct: 61 GKNFRHDIYPQYKSNRIKLPEDLISQFPLLREAVNALNISYEEVAGYEADDVIATLSKNY 120 Query: 129 EK-EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 K + VT++++DKDL+QL+ ++D VK + I + V K+GI K++ +LTG Sbjct: 121 SKFDDIKVTVVTSDKDLLQLLEHNIHIFDPVKNKYIVEDDVQDKFGISSSKLLDFLSLTG 180 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247 D+ DNIPG+P IG KTAA LL +G+L+N+L I++ K RE+I++Y + A LSR+L+ Sbjct: 181 DTSDNIPGVPSIGIKTAAKLLNNFGSLDNLLSQPHAIEKNKCRESIIKYQDQAILSRQLL 240 Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 L V + +E I + +L+ FLK E LIN++ + DA + Sbjct: 241 TLCDTVNLDNNIEKYISRIPDTQKLVKFLKKYELQSLINKIGKIFKTDAFTV 292 >gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust. Identities = 221/514 (42%), Positives = 323/514 (62%), Gaps = 30/514 (5%) Query: 467 HNIKYD-KLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521 + YD K +LH+ ++ +D+ML SYVLDS RSS+D+ ++ ++SY +I Sbjct: 358 QKVVYDLKNILHKVDFDETNQIKNCDDVMLASYVLDSTRSSYDLETL---FISYLNTDI- 413 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQ-LWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + ++E+ + V+L+ LW L + + +VYE ++ P++ ++ Sbjct: 414 --------------AAIKENRWAGATVLLRNLWDELSKLIDLNSAQYVYESIEMPLVPIL 459 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 +ME G ++D++ L++ + EI LL LE IY ++GE FN++SPKQL ILF KLK P Sbjct: 460 YEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAGEWFNINSPKQLSYILFEKLKLP 519 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 KTKTG + T A+ LE++ + II IL++R +KI +TY L IN T R+H Sbjct: 520 VVKKTKTG-YSTDAEVLEEL-YDKHDIIPLILDYRMYTKILTTYCQGLVQAINPVTGRIH 577 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T + T TGRLAS EPNLQNIP+K D G+ IR+AF+ LI ADYSQIELRILAH Sbjct: 578 TNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYMLIDADYSQIELRILAH 637 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 I++ L F+N+LDIH AAEIFGV+I +V+P MR AK +NF I+YGIS + L+ Sbjct: 638 ISEDERLINAFKNNLDIHSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGISDYGLSRD 697 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 ++I R EAA++I RYF ++P + EY++ F R+NG+V TIF R+ + +I S ++R Sbjct: 698 IKISRKEAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTIFNRKRYIKDIKSTNKNLR 757 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 N ER A+N+PIQGSAADI + AMI V+K L+++ L ++++LQ+HDEL+ E P EE Sbjct: 758 NYAERIAMNSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKEIV 817 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I+ ME A L L+VPL V +K +NW E Sbjct: 818 KEIVKSEMENAVL----LKVPLVVEVKEGSNWYE 847 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 110/295 (37%), Positives = 163/295 (55%), Gaps = 12/295 (4%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 + DG+S +YRAF+A P L+ G+P NAI GF N+L K L + + + + AV FD Sbjct: 5 IFDGNSILYRAFFALPQLT-TSTGIPTNAIYGFLNVLLKYLDSEKPD----YVAVAFDKK 59 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 R Y +YKANR +P+ L Q+P VR A IP +E +G+EADD+I T Sbjct: 60 GRAVRKSEYEEYKANRKPMPDSLQVQIPYVREILAAMNIPVLECEGYEADDVIGTLVNRF 119 Query: 129 EKEGFAVTIISTDKDLMQL------VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 + + II+ D+D +QL V T +D E+ +E+V +K+G+ ++V Sbjct: 120 KARDLEIVIITGDRDTLQLLDKNVIVKIVTTRFDRTTEDLYTVENVKEKYGVFAHQVVDY 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +AL GD+ DNIPG+ GIG KTA LL+EY LENI N + IK +E + + A L Sbjct: 180 KALVGDASDNIPGVKGIGDKTAIKLLEEYQTLENIYQNLNNIK-GALKEKLESGKDMAFL 238 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 S++L + D+PI + LE L ++ + RL L LEF I R+ + + + A Sbjct: 239 SKRLATIICDLPIEVNLEELKTKEWDKERLYQILLQLEFKSFIKRLGFSEEINYA 293 >gi|283783098|ref|YP_003373852.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05] gi|283441155|gb|ADB13621.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05] Length = 1025 Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust. Identities = 302/1058 (28%), Positives = 511/1058 (48%), Gaps = 147/1058 (13%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A + G N+I GF ML ++++ + + +A + F Sbjct: 20 LLVVDGHSLAFRAFFAISADNFSTRSGQATNSIWGFITMLSQVVKKEKPDRLA----IAF 75 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRN + P YK R P+ LL QLP+++ +A G+ IE G+E DD+I T Sbjct: 76 DVKGGTFRNTMLPQYKGTRDAAPQELLSQLPIIQQMLKALGVTYIEKPGYEGDDVIGTLA 135 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY-----DTVKEEKIDIEHVIKKWGIPPEKM 179 + G+ ++S D+D QL+ T LY +KE +D V +K+ + P++ Sbjct: 136 VMGSNAGYRTLVLSGDRDAFQLIDDNITVLYPGQHFKDLKE--MDKNAVYEKYHVTPKQY 193 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236 L AL G++ DNIPG+PG+G AA + ++G+LENI+ +++ I KK RENI Sbjct: 194 PDLAALRGETADNIPGVPGVGDGYAAKWINQFGSLENIIEHSNEISGKKGEALRENI--- 250 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR--------- 287 + RL+RK+ L D+ + + ++ L D + +L L LEF +L R Sbjct: 251 -DQVRLNRKVNALVCDLDLGVTVDDLCFGDVDAAKLGILLSQLEFGELKKRKILKTFSNG 309 Query: 288 ------------VATTYDCDA---------------ANIEPVVLDINTTENKGIAIETEI 320 ++TY+ DA N + ++ I+ K +E I Sbjct: 310 MQQSIENNMRIMFSSTYEGDANDDKLAQSAQSNIDAENFQEMLAGIDLHHVK--TVEDFI 367 Query: 321 DRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER--LQKLSQYPINNDS---YTKIVNTK 375 D + ++ + ++ + + N+E T ++ E ++L+ I N+S I+ + Sbjct: 368 DWENSVSSLLYTKIKKDSK--NTEDTFDQVSSEEENFEELNSEKIINNSRKCAEPILKNQ 425 Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHT 435 ++ + + F++I D + + AI +T Q D + Sbjct: 426 EVVIYAHECNKNSKHHFELIADCLIILIANKAAILYTTDLQSSDQA-------------- 471 Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-------- 487 +L L+KF + + + H+ K +L S++ F+ Sbjct: 472 -------------LLEMLRKFLQKNSSITVLHDYKKHLGLLK----SLKLFDSNNSFGTP 514 Query: 488 --DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQVQEHAI 543 D L SY+L+ + + ++A+ +L E + ++ +D + D++V Sbjct: 515 LLDTRLASYLLEPDFRAETLENMAEHYLDIQSVEDNLGENEAKQGELDLLIDNEVSSSEE 574 Query: 544 ENSNVILQL--WLLLRPKLIVEKL-LHVYERLDK------------PMIDVVSQMEITGI 588 E + Q L+ L++ L LH LD P+ V+ ME G Sbjct: 575 ETNEKQTQAREAKFLKTALLIRLLALHFASTLDDRKQTGLMTDLEMPISRVLRGMEDVGA 634 Query: 589 QID----QDLLKQVSA--EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +D +LKQ SA E ++N+ + ++G NL SPKQL ILF Sbjct: 635 AVDMQRLSGMLKQFSADAEFAQNM------AWKVAGSSVNLQSPKQLQQILFEHFGLKPT 688 Query: 643 AKTKTGQWKTTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRT 696 +TK G + T A+ L+ + +P + +L+ R+ +K+K SL + + Sbjct: 689 RRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGALLKHRETNKLKQI-VQSLIDAAHYDD 747 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIEL 755 +R+HT + TGRL+S +PNLQNIP + G++IR AFI + L+S DYSQ+EL Sbjct: 748 RRIHTTFEQTIAATGRLSSADPNLQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVEL 807 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH + L + F + +D H+ VA+ ++ + +E+V+P R H K +++ + YG+S + Sbjct: 808 RIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAYGLSTY 867 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA QL I +EA +YF F +H+Y+E + ++ GY ET+FGRR ++ +++S Sbjct: 868 GLAKQLSISPAEAEMLKNKYFDTFGNVHDYLESLVSKAKELGYTETMFGRRRYFPQLSSN 927 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + R ER A+NAPIQG+AADI + AM+ V L + K+ ++++LQIHDEL+ E+ Sbjct: 928 NRASREAAERGALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEISHG 987 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E I+ +ME A ++L VPL V+ V +WQ Sbjct: 988 EQAQVENIVRKAMENA----VHLDVPLSVSTGVGVDWQ 1021 >gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74] gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74] Length = 1024 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 213/534 (39%), Positives = 339/534 (63%), Gaps = 13/534 (2%) Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHD 504 + I+ K FEN K+G N+KYD L+L +YG+ ++G D M+ Y+++ H+ Sbjct: 493 AQAIVDQFKPVFENPTIEKVGQNLKYDLLMLKKYGVEVQGKLFDTMIAHYLIEP-EMRHN 551 Query: 505 IASIAQKWLSYTRKEI----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 + +A +L+Y+ EI K K + + + +V ++A E++++ LQL P+L Sbjct: 552 MDMMAMTYLNYSPVEIEALIGKKGKGQLTMRDVDIQKVVDYAGEDADITLQLKHAFAPRL 611 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 + L ++++++ P++ V++ +E+ GI+ID + L ++SA + ++ +++ I++++GE Sbjct: 612 EKDNLHKLFDQVEMPLVQVLTDLELEGIKIDTNALSELSATLEVDMRQVQQEIFEIAGES 671 Query: 621 FNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 FN+ SPKQLG++LF KLK AK TKTGQ+ T + L ++ ++ I + IL++R+L K Sbjct: 672 FNIGSPKQLGEVLFDKLKLDKNAKKTKTGQYATGEEILSKLEA-EHEIARKILDYRELIK 730 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 +K+TY D+LP I+KRT R+HT ++ A TGRL+S PNLQNIPI+T GQ+IR+AF+ Sbjct: 731 LKNTYVDALPLLISKRTGRIHTSFNQAVAATGRLSSTNPNLQNIPIRTPRGQEIRKAFVP 790 Query: 740 -PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 P ++SADYSQIELRI+A + + + F N +DIH A+++F V +++V+ MR Sbjct: 791 RGPEFVIMSADYSQIELRIMAAFSGDQTMLEAFNNGVDIHTQTASKVFHVGLDEVTSDMR 850 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 R AKTINF IIYGIS F LA +L+IPR EA I+ YF FP + +YI++ R GY Sbjct: 851 RKAKTINFGIIYGISSFGLAQRLKIPRKEAGQIIEEYFAGFPAVKDYIDQCIEKARGFGY 910 Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 ETI GRR + +INS + R ER A+NAPIQGSAAD+ + AMI +H+ ++ +L + Sbjct: 911 AETILGRRRYLRDINSRNQTDRMFAERNAVNAPIQGSAADMLKIAMIQIHEFMQAERLKS 970 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 KM+L +HDELVF+ +EI ++ V + K +P + V ++ I NW Sbjct: 971 KMILTVHDELVFDAHRDEIDLL-RVRVDEIMKNAIP---MGVKMETGIGTGENW 1020 Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 106/296 (35%), Positives = 168/296 (56%), Gaps = 16/296 (5%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYRA +A +P +S + G+ +A+ GF N + ++L + +H V Sbjct: 8 LFLLDALALIYRAHFAFSKSPRISSR--GINTSAVFGFMNAMIEVLTKEK----PTHIGV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E +P YKANR PE + +P ++ +A IP + + G+EADDII T Sbjct: 62 AFDSAKKTFRHESFPMYKANRQSQPEDISVAMPYIKQIVEAMHIPMLILDGYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV----KEEKIDIEHVIKKWGIPP-EK 178 A F V +++ DKD QLV +Y EK+ + V+++W I E+ Sbjct: 122 IAKKAALADFEVYMMTPDKDYGQLVEEHIHIYKPAFMGKPAEKLGVTEVLERWQIERIEQ 181 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + + L GDS+DNIPGIPGIG KTA L+ ++G++EN++ A +K K +EN++ +A+ Sbjct: 182 VTDMLGLMGDSVDNIPGIPGIGEKTAQKLIADFGSVENLIARADELK-GKLKENVVNFAQ 240 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR-VATTYD 293 +S++L + DVP+ EHL + + PRL + L LEF ++ R + +YD Sbjct: 241 QGLMSKELATIHLDVPVPFDEEHLRHTEYDKPRLAALLDELEFRQMKTRLLGGSYD 296 >gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4] gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4] Length = 930 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 216/535 (40%), Positives = 331/535 (61%), Gaps = 11/535 (2%) Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504 ++++L+ LK E+ LK+G N+KYD +L GI+++G D ML SYV +S S H+ Sbjct: 399 SEQVLAKLKPLLEDPSLLKVGQNLKYDMSILANVGIALKGVAFDTMLESYVFNSVASKHN 458 Query: 505 IASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL- 560 + +A K+L + + +EI + ++I +A E++++ L+L L P+L Sbjct: 459 MDDLALKYLGHKNISFEEIAGKGVKQLTFNQIPLETAAPYAAEDADITLRLHQHLWPRLQ 518 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 +L V+ ++ P++ ++SQ+E G+ ID LL Q S E+++ + LE+ Y+++GE Sbjct: 519 KASELASVFTDIELPLVSILSQIERQGVLIDSMLLGQQSDELARKIDELEQKAYEIAGEP 578 Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 FNL S KQL + F KL +P KT G T + L ++ D P+ K ILE R LSK+ Sbjct: 579 FNLGSTKQLQALFFEKLGYPVLKKTPKGAPSTAEEVLVELAL-DYPLPKIILEHRSLSKL 637 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 KSTY D LP ++ +T RVHT Y A TGRL+S EPNLQNIPI+T+ G++IR AF++P Sbjct: 638 KSTYTDKLPLMVDGKTGRVHTSYHQAIAATGRLSSSEPNLQNIPIRTEEGRRIRHAFVAP 697 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 +K+++ADYSQIELRI+AH+++ L F DIHR AAE+F V+ +V+ + RR Sbjct: 698 EGRKILAADYSQIELRIMAHLSQDKGLLSAFAEGKDIHRATAAEVFDVDFSEVTSEQRRR 757 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 AK +NF +IYG+S F LA QL IPR EA YI YF R+PG+ +Y+E T+ + GYV Sbjct: 758 AKAVNFGLIYGMSAFGLARQLDIPRHEAQQYIDIYFKRYPGVLKYMEDTRAAAAEQGYVS 817 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-DHKLATK 919 T++GRR++ I + R ERAAINAP+QG+AADI ++AMI++ + +E + + Sbjct: 818 TLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMINIAQWIETETQGEIT 877 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M++Q+HDELVFEV ++ + + M +A +L V L + +NW++ Sbjct: 878 MIMQVHDELVFEVDADKADSLKLKVCELMAQAA----SLDVELLAEAGIGDNWEQ 928 Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 163/292 (55%), Gaps = 13/292 (4%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA+YA P L+ G A+ G NML LL + + AV Sbjct: 20 ENPLILVDGSSYLYRAYYAPPHLTNSK-GEATGAVYGVINMLRSLLNQYKP----TQMAV 74 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIA 122 +FD TFRNE+Y +YKA+RP +P+ L Q+ PL R+ +A G+P + I G EADD+I Sbjct: 75 VFDAKGKTFRNEMYAEYKAHRPPMPDDLRTQIEPLHRI-IRALGLPLVCIPGVEADDVIG 133 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A +EG AV I + DKD+ QLV L +T+ + + V +K+G+ PE ++ L Sbjct: 134 TIARQASQEGRAVLISTGDKDMAQLVDDKITLINTMTNTILGPDEVSEKFGVGPELIIDL 193 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEY 236 AL GD DNIPG+PG+G KTA +LQ G +E IL N ++ + K I E+ Sbjct: 194 LALQGDKADNIPGLPGVGEKTALAMLQGVGGVEAILANPEKMPELGFRGAKTMPAKIAEH 253 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + +LS +L ++ DV + L ++ + LI +EF + + V Sbjct: 254 GDMLKLSYELATIKCDVELEQDWHQLNIQGADRDELIKCYGEMEFKRWLAEV 305 >gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust. Identities = 221/514 (42%), Positives = 322/514 (62%), Gaps = 30/514 (5%) Query: 467 HNIKYD-KLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521 + YD K +LH+ ++ D+ML SYVLDS RSS+D+ ++ ++SY +I Sbjct: 358 QKVVYDLKNILHKVDFDEANQIKNCNDVMLASYVLDSTRSSYDLETL---FISYLNTDI- 413 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQ-LWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + ++E+ + V+L+ LW L + + +VYE ++ P++ ++ Sbjct: 414 --------------AAIKENRWAGATVLLRNLWDELSKLIDLNSAQYVYESIEMPLVPIL 459 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 +ME G ++D++ L++ + EI LL LE IY ++GE FN++SPKQL ILF KLK P Sbjct: 460 YEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAGEWFNINSPKQLSYILFEKLKLP 519 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 KTKTG + T A+ LE++ + II IL++R +KI +TY L IN T R+H Sbjct: 520 VVKKTKTG-YSTDAEVLEEL-YDKHDIIPLILDYRMYTKILTTYCQGLVQAINPATGRIH 577 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T + T TGRLAS EPNLQNIP+K D G+ IR+AF+ LI ADYSQIELRILAH Sbjct: 578 TNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYVLIDADYSQIELRILAH 637 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 I++ L F+N+LDIH AAEIFGV+I +V+P MR AK +NF I+YGIS + L+ Sbjct: 638 ISEDERLINAFKNNLDIHSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGISDYGLSRD 697 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 ++I R EAA++I RYF ++P + EY++ F R+NG+V TIF R+ + +I S ++R Sbjct: 698 IKISRKEAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTIFNRKRYIKDIKSTNKNLR 757 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 N ER A+N+PIQGSAADI + AMI V+K L+++ L ++++LQ+HDEL+ E P EE Sbjct: 758 NYAERIAMNSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKEIV 817 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I+ ME A L L+VPL V +K +NW E Sbjct: 818 KEIVKSEMENAVL----LKVPLVVEVKEGSNWYE 847 Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 109/295 (36%), Positives = 162/295 (54%), Gaps = 12/295 (4%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 + DG+S +YRAF+A P L+ G+P NAI GF N+L K L + + + + V FD Sbjct: 5 IFDGNSILYRAFFALPQLT-TSTGIPTNAIYGFLNVLLKYLDSEKPD----YVTVAFDKK 59 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 R Y +YKANR +P+ L Q+P VR A IP +E +G+EADD+I T Sbjct: 60 GRAVRKSEYEEYKANRKPMPDSLQVQIPYVREILAALNIPVLECEGYEADDVIGTLVNRF 119 Query: 129 EKEGFAVTIISTDKDLMQL------VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 + + II+ D+D +QL V T +D E+ +E+V +K+G+ ++V Sbjct: 120 KALDLEIVIITGDRDTLQLLDKNVIVKIVTTRFDRTTEDLYTVENVKEKYGVFAHQVVDY 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +AL GD+ DNIPG+ GIG KTA LL+EY LENI N + IK +E + + A L Sbjct: 180 KALVGDASDNIPGVKGIGDKTAIKLLEEYQTLENIYQNLNNIK-GALKEKLESGKDMAFL 238 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 S++L + D+PI + LE L ++ + RL L LEF I R+ + + + A Sbjct: 239 SKRLATIICDLPIEVNLEELKTKEWDKERLYQILLQLEFKSFIKRLGFSEEINYA 293 >gi|298253854|ref|ZP_06977441.1| DNA polymerase I [Gardnerella vaginalis 5-1] gi|297531997|gb|EFH70972.1| DNA polymerase I [Gardnerella vaginalis 5-1] Length = 1015 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 302/1053 (28%), Positives = 506/1053 (48%), Gaps = 147/1053 (13%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A + G N+I GF ML ++++ + + +A + F Sbjct: 20 LLVVDGHSLAFRAFFAISADNFSTRSGQATNSIWGFITMLSQVVKKEKPDRLA----IAF 75 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRN + P YK R P+ LL QLP+++ +A G+ IE G+E DD+I T Sbjct: 76 DVKGGTFRNTMLPQYKGTRDAAPQELLSQLPIIQQMLKALGVTYIEKPGYEGDDVIGTLA 135 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 + G+ ++S D+D QL+ T LY K+ +K+D V +K+ + P++ Sbjct: 136 VMGSNAGYRTLVLSGDRDAFQLIDDNITVLYPGQHFKDLKKMDKNAVYEKYHVTPKQYPD 195 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYAE 238 L AL G++ DNIPG+PG+G AA + ++G+LENI+ +++ I KK RENI + Sbjct: 196 LAALRGETADNIPGVPGVGDGYAAKWINQFGSLENIIEHSNEISGKKGEALRENI----D 251 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR----------- 287 RL+RK+ L D+ + + ++ L D + +L L LEF +L R Sbjct: 252 QVRLNRKVNALVCDLDLGVTVDDLCFGDVDAVKLGILLSQLEFGELKKRKILKTFSNGMQ 311 Query: 288 ----------VATTYDCDA---------------ANIEPVVLDINTTENKGIAIETEIDR 322 ++TY+ DA N + ++ I+ K +E ID Sbjct: 312 QSIENNMRIMFSSTYEGDANNDKLAQSAQSNIDAENFQEMLAGIDLHHVK--TVEDFIDW 369 Query: 323 DTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTK--IVNTKDIQQW 380 + ++ + ++ + + N+E T ++L E++ INN I+ +++ + Sbjct: 370 ENSVSSLLYTKIKKDSK--NTEDTFEELNSEKI-------INNSRKCAEPILKNQEVVIY 420 Query: 381 VQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDST 440 + F++I D + + AI +T Q D + Sbjct: 421 AHECNKNSKHHFELIADCLIILIANKAAILYTTDLQSSDQA------------------- 461 Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE----------DIM 490 +L L+KF + + + H+ K +L S++ F+ D Sbjct: 462 --------LLEMLRKFLQKNSSITVLHDYKKHLGLLK----SLKLFDSNNSFGTPLLDTR 509 Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKSSIPIDKISDSQV---QEHAIEN 545 L SY+L+ + + ++A+ +L E + ++ +D + D + +E E Sbjct: 510 LASYLLEPDFRAETLENMAEHYLDIQSDEDNLGENEAKQGELDLLIDDGMPASEEETNEK 569 Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDK------------PMIDVVSQMEITGIQID-- 591 + L LI LH LD P+ V+ ME G +D Sbjct: 570 QTQACEAKFLRTTLLIRLLALHFASTLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQ 629 Query: 592 --QDLLKQVSA--EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 +LKQ SA E ++N+ + ++G NL SPKQL ILF +TK Sbjct: 630 RLSSMLKQFSADAEFAQNM------AWKVAGSSVNLQSPKQLQQILFEHFGLKPTRRTKN 683 Query: 648 GQWKTTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 G + T A+ L+ + +P + +L+ R+ +K+K SL + + +R+HT Sbjct: 684 GSYTTNAEALQAMYVKLDPEEPASQFLGALLKHRETNKLKQI-VQSLIDAAHYDDRRIHT 742 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 + TGRL+S +PNLQNIP + G++IR AFI + L+S DYSQ+ELRI+AH Sbjct: 743 TFEQTIAATGRLSSADPNLQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVELRIMAH 802 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 + L + F + +D H+ VA+ ++ + +E+VSP R H K +++ + YG+S + LA Q Sbjct: 803 ASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVSPDQRSHVKAMSYGLAYGLSTYGLAKQ 862 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I +EA +YF F +H+Y+E + ++ GY ET+FGRR ++ +++S + R Sbjct: 863 LSISPAEAEMLKNKYFDTFGNVHDYLESLVSKAKELGYTETMFGRRRYFPQLSSNNRASR 922 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQG+AADI + AM+ V L + K+ ++++LQIHDEL+ E+ E Sbjct: 923 EAAERGALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEISHGEQAQV 982 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 I+ +ME A ++L VPL V+ V +WQ Sbjct: 983 ENIVRKAMENA----VHLDVPLNVSTGVGVDWQ 1011 >gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 221/514 (42%), Positives = 322/514 (62%), Gaps = 30/514 (5%) Query: 467 HNIKYD-KLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521 + YD K +LH+ ++ D+ML SYVLDS RSS+D+ ++ ++SY +I Sbjct: 358 QKVVYDLKNILHKVDFDEANQIKNCNDVMLASYVLDSTRSSYDLETL---FISYLNTDI- 413 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQ-LWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + ++E+ + V+L+ LW L + + +VYE ++ P++ ++ Sbjct: 414 --------------AAIKENRWAGATVLLRNLWDELSKLIDLNSAQYVYESIEMPLVPIL 459 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 +ME G ++D++ L++ + EI LL LE IY ++GE FN++SPKQL ILF KLK P Sbjct: 460 YEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAGEWFNINSPKQLSYILFEKLKLP 519 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 KTKTG + T A+ LE++ + II IL++R +KI +TY L IN T R+H Sbjct: 520 VVKKTKTG-YSTDAEVLEEL-YDKHDIIPLILDYRMYTKILTTYCQGLVQAINPATGRIH 577 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T + T TGRLAS EPNLQNIP+K D G+ IR+AF+ LI ADYSQIELRILAH Sbjct: 578 TNFIQTGTATGRLASAEPNLQNIPVKYDEGKLIRKAFVPDEGYVLIDADYSQIELRILAH 637 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 I++ L F+N+LDIH AAEIFGV+I +V+P MR AK +NF I+YGIS + L+ Sbjct: 638 ISEDERLINAFKNNLDIHSQTAAEIFGVDISQVTPIMRSQAKAVNFGIVYGISDYGLSRD 697 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 ++I R EAA++I RYF ++P + EY++ F R+NG+V TIF R+ + +I S ++R Sbjct: 698 IKISRKEAAEFINRYFEKYPRVKEYLDNVVKFARENGFVLTIFNRKRYIKDIKSTNKNLR 757 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 N ER A+N+PIQGSAADI + AMI V+K L+++ L ++++LQ+HDEL+ E P EE Sbjct: 758 NYAERIAMNSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKEIV 817 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I+ ME A L L+VPL V +K +NW E Sbjct: 818 KEIVKSEMENAVL----LKVPLVVEVKEGSNWYE 847 Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 109/295 (36%), Positives = 164/295 (55%), Gaps = 12/295 (4%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 + DG+S +YRAF+A P L+ G+P NAI GF N+L K L + + + + AV FD Sbjct: 5 IFDGNSILYRAFFALPQLT-TSTGIPTNAIYGFLNVLLKYLDSEKPD----YVAVAFDKK 59 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 R Y +YKANR +P+ L Q+P VR A IP ++ +G+EADD+I T Sbjct: 60 GRAVRKSEYEEYKANRKPMPDSLQVQIPYVREILAALNIPVLKCEGYEADDVIGTLVNRF 119 Query: 129 EKEGFAVTIISTDKDLMQL------VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 + + + II+ D+D +QL V T +D E+ +E+V +K+G+ ++V Sbjct: 120 KAQDLEIVIITGDRDTLQLLDKNVIVKIVTTRFDRTTEDLYTVENVKEKYGVFAHQVVDY 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +AL GD+ DNIPG+ GIG KTA LL+EY LENI N + IK +E + + A L Sbjct: 180 KALVGDASDNIPGVKGIGDKTAIKLLEEYQTLENIYQNLNNIK-GALKEKLESGKDMAFL 238 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 S++L + D+PI + LE L ++ + RL L LEF I R+ + + + A Sbjct: 239 SKRLATIICDLPIEVNLEELKTKEWDKERLYQILLQLEFKSFIKRLGFSEEINYA 293 >gi|73666681|ref|YP_302697.1| DNA polymerase I [Ehrlichia canis str. Jake] gi|72393822|gb|AAZ68099.1| DNA polymerase, family A [Ehrlichia canis str. Jake] Length = 861 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 227/529 (42%), Positives = 317/529 (59%), Gaps = 40/529 (7%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507 + L ++K F + LK+ +++K L+ + + F DIM+MSYVL+ G H + Sbjct: 362 DALEFIKPIFSLGYILKVIYDVK--TLLKIIPNLDIVAFNDIMVMSYVLNPGVHDHSL-- 417 Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV--ILQLWLLLRPKLIVEKL 565 Q +SY E +I N N +L L LLR L V++L Sbjct: 418 --QNIISYN----------------------VEQSITNMNAANLLLLHELLRKSLFVDRL 453 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 VYER++KP+I V+ ME G+ ++ D+LK +SA S+ + LE IY LSG +FN++S Sbjct: 454 YTVYERVEKPLIRVLDNMEKIGVLVNVDVLKTLSATFSEKINMLESEIYKLSGAEFNIAS 513 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 KQLG+ILF K+ G K +G + T A+ L + D I IL+WR L+K+K+TY Sbjct: 514 SKQLGNILFDKMGIKKGKKLSSGNYSTDAEVLSDLAFNDVEIADKILKWRHLTKLKTTYT 573 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745 D L N + RVHTFYS+ ST TGRL+S PNLQNIP++++ G IRRAFI+ KL Sbjct: 574 DVLEKQKNSNSGRVHTFYSMVSTATGRLSSSNPNLQNIPVRSEEGNSIRRAFIAKKGYKL 633 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 ISADYSQIELRI+AHIA + F + DIH + A +IF N EK+ +RR AK+IN Sbjct: 634 ISADYSQIELRIMAHIADVQAFKNAFFLNQDIHSITAKQIF--NTEKLDKNLRRRAKSIN 691 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F IIYG+S F LA QL I RSEA+ YI YF +P I Y+E K + + +GY TIFGR Sbjct: 692 FGIIYGMSAFGLAKQLSISRSEASTYINNYFRSYPEIQSYMENIKAYAKTHGYTRTIFGR 751 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 + +INS + RN +ERAAINAP+QG++ADI + +MI + L++ L +LQ+H Sbjct: 752 KCFVKDINSDNVTARNFSERAAINAPLQGTSADIIKMSMIHLFDKLKNGSL----ILQVH 807 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DEL+FE+ EE++ A +II ME + L VPLKV+ + +NW + Sbjct: 808 DELLFEILEEQVDDAVKIIREVMENI----VKLSVPLKVDFNIGDNWAD 852 Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 113/281 (40%), Positives = 178/281 (63%), Gaps = 6/281 (2%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D ++RA+YA P LS + GLP+ + GF N+ K ++ + + V+FD Sbjct: 6 VIDAYGLLFRAYYALPNLSTSY-GLPIGGVYGFINIFLKYIEKHSTD----YLVVVFDTG 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY-I 127 + FR++IYP+YK+NRPK+P L+ Q L+R A AF I + E+ G+EADD+IAT T Sbjct: 61 SKNFRHDIYPEYKSNRPKLPNDLISQFSLLREAVSAFNIASEEVIGYEADDVIATLTKKY 120 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 ++ + VT++++DKDL+QL++ ++D +K I+ E V K+GI +++ +LTG Sbjct: 121 SQLQDVEVTVVTSDKDLLQLLNYGIRIFDPIKNRYIEEEDVHNKFGISSNQLLDFLSLTG 180 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247 D+ DNIPG+PGIG KTAA LL ++G+L ++L+ A IK + RE+I++Y++ A LSR+LV Sbjct: 181 DASDNIPGVPGIGVKTAAKLLNDFGSLNDLLLRAQEIKTNRCRESIVQYSDQAILSRQLV 240 Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 L V I +E I ++ L +FLK E LIN+V Sbjct: 241 TLCDTVDICGGIEKYIFQNSEIHELTAFLKKYELQSLINKV 281 >gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 915 Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust. Identities = 213/611 (34%), Positives = 354/611 (57%), Gaps = 23/611 (3%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y + ++I+ ++L G + T +DA + + ++++ E Sbjct: 322 YRLVTTDEEIKTLAERLAGAGRFALDTETTGLDALSADLVGLSLAPAAG--------EGY 373 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ + H+ + G+ T E+ YL + KI HN KYD +L G+ + G + Sbjct: 374 YLPVG-HSGVE--GRQWTTDELKRYLGPVLADVGIGKIAHNAKYDLHILAGAGLLVAGLD 430 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI---LKSRKSSIPIDKISDSQVQEHAI 543 D ML +++L G SS + +A L I + + I + ++A Sbjct: 431 FDTMLAAHLL--GESSLSLKGLAFNRLGIEMTPITALIGEGRHQKCISTCGLRETADYAC 488 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 ++++ L+L+ LL P+L E +++ ++ P++ V+ ME GI +D +L +SA + Sbjct: 489 ADADMTLRLYQLLLPELEKENQSRLFDEVEMPLVPVIMDMEAAGIAVDVTILSAMSARLG 548 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L +E IY+ + FN++SP+QLG++LF +LK P G KT++G ++T A LE + Sbjct: 549 RQLTEIEAAIYEQANRPFNIASPRQLGEVLFEELKLPVGRKTRSG-YRTDAAVLEGLK-D 606 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 ++ I++ ILE+R L+K+KSTY D LP ++ R R+HT ++ A T TGRL+S +PNLQNI Sbjct: 607 EHEIVRLILEYRTLAKLKSTYVDILPAMVSARDGRLHTSFNQARTATGRLSSSDPNLQNI 666 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 P++ G++IR+AF++PP L++ADYSQI+LR LAH++ + L F DIH A Sbjct: 667 PVRGQYGREIRQAFVAPPGHFLLAADYSQIDLRALAHLSGDSALIAAFNAEEDIHTATAM 726 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 ++G+ ++++P+MRR AKT+NF +IYG+S + L + R E+ +I+ YF R+PG+ Sbjct: 727 SLYGLPRDEITPEMRRFAKTVNFGVIYGMSGYGLEQATEMSREESTRFIQTYFERYPGVR 786 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 Y+ TK R GYVETI GRR + +IN+ +R ER AIN P+QG++ADI + A Sbjct: 787 AYLNLTKEQARSRGYVETILGRRRYIPDINAANRQVREAAERMAINMPVQGTSADIIKVA 846 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ V + ++ L +++LLQ+HDEL+FEVP+ E+ S++ M A + L+VPL+ Sbjct: 847 MLEVRREMDSQGLESRLLLQVHDELIFEVPQAELMFMSELASRRMSAA----VELKVPLR 902 Query: 964 VNIKVSNNWQE 974 V+IK NW E Sbjct: 903 VDIKYGANWGE 913 Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 130/384 (33%), Positives = 197/384 (51%), Gaps = 25/384 (6%) Query: 9 LVDGSSFIYRAFYA----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L D S+ ++RAF+A PL R+ G +A+ GF N+L K+L + R E ++A+ Sbjct: 17 LFDASALVHRAFHAFKTGNPLTVRR-TGEITSAVFGFTNILLKVLADLRPE----YYAIA 71 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E+ YKA+RP+ P L+ Q+ VR AFGIP E+ G+EADD++ Sbjct: 72 FDRKEKTFRHELSEAYKAHRPETPPELIAQMKRVRQLVDAFGIPVFELPGYEADDLLGVL 131 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY----DTVKEEKI-DIEHVIKKWGIPPEK 178 + + G AV I++ D D MQLV LY T + ++ D + V++K+G+PP Sbjct: 132 AHRSAGAGAAVVIVTGDADAMQLVDDDIKVLYPKAGGTFSDTRLYDADAVVEKFGVPPRL 191 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + +AL GD+ DNI G+PGIG KTA LL E+G+++ I N ++ +K RE + Sbjct: 192 VADFKALVGDASDNIKGVPGIGRKTAVKLLNEFGDIDAIYENIELVRPEKLRELLRREEA 251 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 AR S KL ++ TD+P+ LE + + ++I L+ LEF LINR+ + A Sbjct: 252 AARESLKLAIIVTDLPVDFDLERCHVGLFDREKVIPLLQELEFGSLINRLPQ----NGAP 307 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 + VV N E + + T D IKT +++E T L L Sbjct: 308 VPAVVETRNQLECRYRLVTT----DEEIKTLAERLAGAGRFALDTETTGLDALSADLVGL 363 Query: 359 SQYPINNDSYTKIVNTKDIQ--QW 380 S P + Y V ++ QW Sbjct: 364 SLAPAAGEGYYLPVGHSGVEGRQW 387 >gi|332799559|ref|YP_004461058.1| DNA polymerase I [Tepidanaerobacter sp. Re1] gi|332697294|gb|AEE91751.1| DNA polymerase I [Tepidanaerobacter sp. Re1] Length = 864 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 237/577 (41%), Positives = 348/577 (60%), Gaps = 38/577 (6%) Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEH 461 SK IA+ + ++KD S+ + I+I + S + L KE +S+LK+ E+ Sbjct: 319 SKNIAVLVDA-EKKDLVSYATDGIYISVENKCYFIS---HKLLKENSSISFLKQILEDTA 374 Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521 KI H+ K+ + VL + GI R D ML +Y+L+S + +DI + ++L T +I Sbjct: 375 IYKITHDGKFTRNVLRQLGIDFRCQFDTMLAAYLLESSKPRYDIPILVMEYLGKTMSDIP 434 Query: 522 K-SRKSS--IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 K+S + KI D ++++ +++KL + ++ P Sbjct: 435 SFDEKTSYLFELKKIMDEKIKD-------------------CLMDKLFY---EVEMPFSV 472 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V++ ME GI++D L+++S K L +L E IYDL+G +FN++SPKQLG+ILF KL Sbjct: 473 VLADMEHAGIKVDFAKLQELSERFGKKLAALTEEIYDLAGTEFNINSPKQLGEILFEKLS 532 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P +TKTG + T A+ LE++ +PII+ ILE+R L K+KSTYAD L ++K+T R Sbjct: 533 LPVIKRTKTG-YSTDAEVLEKLRPS-HPIIEKILEYRFLMKMKSTYADGLSALVDKKTGR 590 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRI 757 ++T ++ T TGR++S EPNLQNIP+KT+ G+ IR F S P L+S DYSQIELR+ Sbjct: 591 IYTSFNQTVTSTGRISSTEPNLQNIPVKTEEGKHIRGVFTSDGPGHVLLSGDYSQIELRV 650 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 LAH+++ L + F + DIHR A+E+FGV E+V+P +R AK +NF IIYGIS + L Sbjct: 651 LAHMSQDPGLIEAFVSGEDIHRRTASEVFGVPPEEVTPLLRDKAKAVNFGIIYGISDYGL 710 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 A L I EA +YI YF R+PG+ +YI +T + GYV T+ RR + +INS Sbjct: 711 AQNLGISNQEAKEYIDAYFARYPGVRDYIRETIRSAKALGYVTTLLNRRRYIPDINSRNY 770 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 +R+ ER A+N PIQGSAADI + AM+ VH +L + L K+LLQ+HDEL+ +VPEEE+ Sbjct: 771 HLRSFAERTAVNTPIQGSAADIIKIAMVKVHDNLRQNNLKAKILLQVHDELILDVPEEEL 830 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 T +I+ ME A I LRVPL V+ K NW+E Sbjct: 831 TAVKEILKQHMENA----IPLRVPLVVDFKQGYNWEE 863 Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 123/309 (39%), Positives = 180/309 (58%), Gaps = 14/309 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG+S ++RAF+A P L R G+ NA+ GF NML+++LQ E + V FD Sbjct: 4 MLLIDGNSLLHRAFHALPPL-RTSKGVHTNAVYGFLNMLFRILQ----EENPDYVTVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ Y YKA RPK P+ L+ Q +++ +A I IE GFEADDI+ T + Sbjct: 59 KKGPTFRHDEYAAYKATRPKTPDELIGQFDILKEILKALNINFIEADGFEADDILGTISK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 E+EG I++ DKD +QLVS T + T K E D E V ++GI PE + + Sbjct: 119 KGEQEGIFSIIVTGDKDALQLVSSNTNVLLTKKGISEMETYDTEKVKSRYGIRPEAVADM 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+PG+G KTAA L+QE+ L+N+L N ++K K REN+ +YAE A Sbjct: 179 KGLMGDKSDNIPGVPGVGEKTAAKLIQEFKTLDNVLKNTDKLKG-KVRENLEKYAEQAEA 237 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S+ L + DVP+ + ++ + + +LI+ + LEF LI+RV A +I+ Sbjct: 238 SKYLATIVRDVPLEFNPDDIVYCEPDYDKLINLFRDLEFYSLIDRVKIP----ANSIDTK 293 Query: 303 VLDINTTEN 311 D TT+N Sbjct: 294 EFDTETTQN 302 >gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi] Length = 850 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 219/603 (36%), Positives = 349/603 (57%), Gaps = 68/603 (11%) Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432 +T+D +++K E +G + AFH+K IA T+++ LS Sbjct: 304 HTEDPVAFLRKCENVG----------LLAFHAK---IADGTINE--------------LS 336 Query: 433 VHTSQDS--TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIM 490 V ++ T + + + ++ ++ LKI H+ K ++ R+ + F+D+M Sbjct: 337 VAYDREHALTVRGDEVRNFMDAARQILASDSVLKIVHDAK----LIMRHFPDLGAFDDVM 392 Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550 LMSY LD+G H +A +A ++L Q+ + ++ Sbjct: 393 LMSYSLDAGSHDHSLAGMAYRYLH------------------------QKFPARMACTLV 428 Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610 QL ++R KL++++L VY +L++P++ V+ +M+ G+++D ++LKQ+S + ++ SLE Sbjct: 429 QLHGVMRNKLLLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSIRSLE 488 Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIK 669 + IYDL+G FN++S +QLG +LF ++ S AK +G + T A+ L ++ I Sbjct: 489 KEIYDLAGCTFNVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGVEIAD 548 Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729 +L+WR SK+KSTY D+L + T+RVHT YS+ ST TGR++S PNLQNIPI++ Sbjct: 549 KVLKWRHFSKLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQNIPIRSKE 608 Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789 G +IR+AF++ KL+SADYSQ+EL+I+AHIA + F DIH + A +IFG Sbjct: 609 GTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDG 668 Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849 + P++RR AK+INF IIYG+SPF LA + I R EA+ Y+ +YF +P I Y+E Sbjct: 669 V--TDPELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQYFRSYPEIKSYMEAI 726 Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 K + R+ GY T FGR+ + INS + ++R ERAAINAPIQG+AAD+ ++AMI++ Sbjct: 727 KAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVKKAMINLRN 786 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 LE ++LQ+HDEL+ EVPE + ++++ ME N VPLKV+I V Sbjct: 787 KLE----VGAIILQVHDELLVEVPESHVDRVAKLMKEVMEGVA----NFSVPLKVDIGVG 838 Query: 970 NNW 972 ++W Sbjct: 839 SSW 841 Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 111/284 (39%), Positives = 172/284 (60%), Gaps = 5/284 (1%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 +VD F++RA+YA P L G P+ + GF N+L K L A + AV+FD Sbjct: 6 VVDAYGFLFRAYYALPQLHTSQ-GAPIGGVYGFINILLKHLLTHN----ADYIAVVFDTG 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 + FR+ +YP YK NRP++PE LL Q +R A A GI + E+ FEADD+IAT + Sbjct: 61 SKNFRHTLYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVHNFEADDVIATLSTKY 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 E V +I+ DKDL+QL+ ++D +K + + E+V+ K+G+ P+K++ + ALTGD Sbjct: 121 ASEDVQVRVITADKDLLQLMGEHVQIFDPIKNKYLTDEYVVDKFGVTPDKLLDVLALTGD 180 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248 + DNIPG+P IG KTAA L+ ++G+L+N+L A +++QKK RE ++++A+ A LSR LV Sbjct: 181 ASDNIPGVPSIGVKTAARLINQFGSLDNVLSCAEKVEQKKCREMLIQHADQALLSRDLVS 240 Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 L+ V L + + +L++FL+ E L ++ Y Sbjct: 241 LQRAVEFDGDLNKYAKKLPDSEQLLAFLEKYELNSLRGKIEQCY 284 >gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment'] Length = 873 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 211/533 (39%), Positives = 324/533 (60%), Gaps = 12/533 (2%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501 + +T L ++ E KIGH++K + + G+++RG D M+ SY+L+ RS Sbjct: 349 DAMTDSYLERVRPVLAGERPGKIGHDLKRIMTAIGKKGVALRGLSFDTMVASYLLNPNRS 408 Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561 H +A++ + L ++ +R + A E ++++ QL L P+L Sbjct: 409 DHSLATLVFELLGVKWEQGPGARGGND-----GRETAMRGAAEEAHLVWQLKEALLPQLG 463 Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 LL ++ ++ P+I+V++ ME G +D D L ++ E+ L LE I+ L+GE F Sbjct: 464 QAGLLPLFTTIEMPLIEVLASMEEVGFSVDTDQLSELGKELESQLSRLESRIFALAGEHF 523 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 N++SPKQL ++LF +LK +TKTG + T + L+++ + + +L +R L+K+K Sbjct: 524 NINSPKQLAEVLFQRLKLTPLKRTKTG-YSTNVEVLQRLAV-THELPAEVLNYRSLAKLK 581 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 STY D L + + R+HT ++ T TGRL+S EPNLQNIP++T++G++IR+AF++ Sbjct: 582 STYVDVLLRLAERTSGRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEVGRRIRQAFVASE 641 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 +L+SADYSQIELRILAH+++ L F D+HR AAE+FGV E V+ +MRR A Sbjct: 642 GHRLLSADYSQIELRILAHLSQDQALIAAFIAGGDVHRSTAAEVFGVQPEAVTVEMRRRA 701 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K INF I+YG+SPF LA +L I + EAA YI RYF + G+ +I++T R+ G+V T Sbjct: 702 KVINFGIVYGMSPFGLAAELEISQEEAALYIDRYFQIYHGVKAFIDRTICEARELGFVST 761 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 +GRR E+ S ++R + ER A+N PIQGSAAD+ + AMI++ + L +L T+M+ Sbjct: 762 FWGRRRAIPELKSSDQTVRQLGERLAVNTPIQGSAADLIKVAMIAISRRLRSEQLETRMI 821 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LQIHDEL+FEVPE E+ A ++ ME A L VPLKV+I V +W E Sbjct: 822 LQIHDELLFEVPEVELDVARRMATEEMEWAA----TLSVPLKVDIGVGTSWAE 870 Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 115/278 (41%), Positives = 171/278 (61%), Gaps = 5/278 (1%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+DGSS+++RA++A P LS +G+P A+ GF NML K++++ R E++ V+FD Sbjct: 6 LYLIDGSSYVFRAYHALPPLS-NSEGIPTGAVYGFTNMLLKIIRDERPEAMV----VVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 T R+ Y DYKANR ++P+ L QLP + +A IP + QG EADD+I + Sbjct: 61 SAGPTERHTRYADYKANRAQMPDDLSRQLPYIHRVVEAMRIPLLMQQGQEADDLIGSLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + F VTI + DKD++QLV P +YD++KE V+K++G+PP ++V + L Sbjct: 121 QAAAQDFRVTIATGDKDMLQLVGPEIRVYDSMKETVYGESEVVKRFGVPPGQVVEVMGLM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD IDNIPG+ GIG KTA L+Q++GN+E + IK K RE + E ARLSR+L Sbjct: 181 GDPIDNIPGVHGIGEKTARNLIQQFGNIEETVARLHEIKSAKVREIVRSGVEQARLSREL 240 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 +RTD+ I + L L L+ + + + + L FT L Sbjct: 241 ARIRTDLQIGLDLGQLTLQAPDHSAMQALFRELGFTAL 278 >gi|332967940|gb|EGK07028.1| DNA-directed DNA polymerase I [Kingella kingae ATCC 23330] Length = 925 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 215/532 (40%), Positives = 331/532 (62%), Gaps = 11/532 (2%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIAS 507 + S L+ F E+E KIG N+KYD+ + I ++G D ML SY+++S +H++ Sbjct: 397 VKSSLQPFLESESLGKIGQNLKYDQHIFKNQDIDLKGIVGDAMLASYIVES-HLTHNLDD 455 Query: 508 IAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 +A +WL + + + + I + ++A ++++ L++ LR ++ + Sbjct: 456 LAARWLGLETISYESLCGKGAKEISFADVDVQAATQYACQDADFALRIEQHLRTQMDAAQ 515 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L +Y++++ P+ V+ +ME G+QID+ L Q SA + LL LE+ Y+L+G+ FNL+ Sbjct: 516 L-ALYQQMELPVAQVLFEMERAGVQIDRAELAQQSATLGAELLQLEQQAYELAGQPFNLN 574 Query: 625 SPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 SPKQL +ILF KL P+ KT G T LE++ D P+ K IL+ R LSK+KS Sbjct: 575 SPKQLQEILFDKLGIPTKGVKKTAKGGLSTDESVLEKL-ADDYPLPKIILQTRSLSKLKS 633 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D L I +T RVHT Y+ A +TGRLAS PNLQNIPI+T+ G+++RRAF +P Sbjct: 634 TYTDKLAEMILPQTGRVHTNYAQAVAITGRLASNNPNLQNIPIRTEQGRRVRRAFTAPQN 693 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 ++SADYSQIELRI+AH++ T L F N+ D+HR AAE+FG+ E ++ + RR+AK Sbjct: 694 CVIVSADYSQIELRIMAHLSGDTTLQAAFHNNEDVHRRTAAEVFGMAPEHITSEQRRYAK 753 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 TINF +IYG+S + LA L I A +I+RYF R+ G+ +Y+++TK +Q GYVET+ Sbjct: 754 TINFGLIYGMSEYGLAKSLGIDAMSAKMFIQRYFARYTGVADYMQRTKEQAQQLGYVETL 813 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 FGRR++ +I++ + R ERAAINAP+QG+A+D+ +RAMISV L L +++++ Sbjct: 814 FGRRLYLPDIHAKNAMTRAGAERAAINAPMQGTASDLIKRAMISVQDFLRQSSLHSRLVM 873 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q+HDELV EV + E+ + + M + + +N VPL + V NW + Sbjct: 874 QVHDELVLEVHDSELALIREKLPELMAQVGVGVLN--VPLLAEVGVGANWDD 923 Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 107/253 (42%), Positives = 146/253 (57%), Gaps = 6/253 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRAFYA LS DG P NA+ G NML +L R E A + AV+FD Sbjct: 6 LLLVDGSSYLYRAFYAMTHLSAP-DGTPTNAVYGVLNMLKRL----RAEQSADYCAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+ +Y DYKA RP +P+ L PQ ++ G ++I G EADD+I T Sbjct: 61 AKGKNFRHALYEDYKATRPPMPDELRPQADMLPDLVDLMGWKVLKISGVEADDVIGTLAI 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A + V I + DKD+ QLVSP L +T+K E +D + V+ K+G+ PE++ AL Sbjct: 121 AAAAQDMNVIISTGDKDMAQLVSPRITLVNTMKNEMLDHDGVVAKFGVKPEQIRDFLALM 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD +DN+PG+ G KTAA L EYG+L+ I+ A K K EN+ LS +L Sbjct: 181 GDKVDNVPGVEKCGEKTAAKWLAEYGSLDEIMRRADEFK-GKIGENLRAALVQLPLSYEL 239 Query: 247 VMLRTDVPITIPL 259 V ++TDV ++ L Sbjct: 240 VTIKTDVDLSTDL 252 >gi|42522378|ref|NP_967758.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100] gi|39574910|emb|CAE78751.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100] Length = 863 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 219/487 (44%), Positives = 308/487 (63%), Gaps = 33/487 (6%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D L +YVL +G +S D A I ++++ +P D S SQ+ N Sbjct: 408 DSQLAAYVLKAGDTS-DFAKIYTRFMA-----------DVLP-DLASPSQLY-------N 447 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 L L+ +L + VY+ LD P+ V+ ME G++ID+DLL + S E++K++ Sbjct: 448 AQLNFATTLKSQLQTVQGEKVYQELDLPLARVLLSMERLGVRIDKDLLAKQSEELAKDIA 507 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 +E+ I++ +GE FN+ SPKQLG ILF KL P+G KTKTG + D E + ++PI Sbjct: 508 EIEKQIHEAAGESFNVGSPKQLGVILFEKLGLPAGKKTKTG----YSTDEEVLLGLEHPI 563 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 K +L+WR++SK+KSTY D+LP I+ + +RVHT ++ A T TGRL+S +PNLQNIPI+T Sbjct: 564 AKLVLQWREMSKLKSTYVDALPTMIDPKDERVHTSFNQALTTTGRLSSTQPNLQNIPIRT 623 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 GQ++R+AFI+ P KL+S DYSQIELRILAHI++ L + F LDIH AAE+FG Sbjct: 624 ARGQQVRKAFIAAPRMKLLSVDYSQIELRILAHISEDPNLCKAFAEDLDIHAATAAEVFG 683 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 V ++ V+ + RR AK +NF I YG F LA L I R+EA D I+RYF+RF + EYI+ Sbjct: 684 VPLKDVTAEHRRSAKAVNFGIAYGQGAFGLAENLGISRTEAKDIIERYFNRFKNVREYID 743 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 T + GYVET+FGRR + DE+ S +++ ERAAINAPIQG+A+D+ ++AMI V Sbjct: 744 GTIKMAHEKGYVETLFGRRRYIDELQSKNMALKKFGERAAINAPIQGTASDLVKKAMIEV 803 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 + K+ +MLLQ+HDEL+FE EE + S +V ME + L+VPLKVN Sbjct: 804 FE-----KVPVRMLLQVHDELIFEDFEENLQKHSPQLVSIMENV----MKLKVPLKVNYA 854 Query: 968 VSNNWQE 974 + NNW E Sbjct: 855 IGNNWDE 861 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 165/288 (57%), Gaps = 5/288 (1%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++L+D S+ +RAFYA LS G+PVNA+ GF +M+ KLL+ + E + +D Sbjct: 4 IYLIDVSAMFFRAFYAIRALSSP-SGVPVNAVYGFLSMMIKLLKEEKPE----YLVFCYD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +FR +Y YKA+R ++P+ L Q+P ++ G+PA E++ FEADDII T T Sbjct: 59 RKEPSFRKTMYDGYKAHRTEMPDELAQQIPYIKRLADLLGVPAFEVESFEADDIIGTLTK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + + G V I+S DKD QL+ LYDT+K + + E V +KWG+ P++ + A+ Sbjct: 119 WSRRNGMEVFIVSGDKDFGQLIEDGVTLYDTMKGVRYNAEGVFEKWGVRPDQFIDYLAIV 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DN+PG+ G+G K A LL+++ ++E+I N +++ K RE ++ + A LS+KL Sbjct: 179 GDASDNVPGVKGVGEKGAIKLLEQFKHVEDIYENIDKVESKSVREKLIASKDNALLSKKL 238 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 V + DVP+ LE L+ L +FL L F + T D Sbjct: 239 VTISCDVPMPDDLEAYKLKPFKADELRAFLHELNFKSFEKSLFGTVDT 286 >gi|71899481|ref|ZP_00681639.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71730794|gb|EAO32867.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 462 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 201/452 (44%), Positives = 293/452 (64%), Gaps = 8/452 (1%) Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEIT 586 IP + + ++A E++++ L+L +L PKL+ E +L VY ++ P++ V+ ++E Sbjct: 16 IPFSHVGVQEATQYAAEDADITLRLHCVLAPKLLAEPILERVYREIEMPLVAVLERIEAN 75 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G+QID + L + SA++S+ ++ ++ DL+G FNL SPKQL +LF +LK P KT Sbjct: 76 GVQIDAEELYKQSADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPVVVKTP 135 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 GQ T + LE I + + + ILE+R L+K+++TY + LP I+ T RVHT Y A Sbjct: 136 KGQPSTNEEALEAI-VDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQA 194 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 TGRL+S +PNLQNIPI+TD G++IRRAF++P +KLI+ DYSQIELRI+AH++ Sbjct: 195 GAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAG 254 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L FE+ +D+H +AAE+FG I++V+P RR AK INF +IYG+S F LA QL I R Sbjct: 255 LVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRG 314 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA DYI YF RF G+ +++E T+ R GYVET+FGRR++ + I S + R ERA Sbjct: 315 EAQDYIALYFDRFSGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA 374 Query: 887 AINAPIQGSAADITRRAMISVHK--SLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 AINAP+QG+AADI +RAM++V + H+ M+LQ+HDELVFE E + T + Sbjct: 375 AINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPT----L 430 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 VH + LRVPL V++ V ++W E + Sbjct: 431 VHEVSARMAAAAQLRVPLVVDVGVGHHWDEAH 462 >gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 896 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 235/615 (38%), Positives = 373/615 (60%), Gaps = 30/615 (4%) Query: 370 KIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428 KIV TK+ + V++L+ S +F TD+++ + + + ++ K+ ++ + Sbjct: 300 KIVATKEQLDDLVKELKNSSSFAFDTETDSLNTYEANLVGLSFCA---KEGRAYYIPLQH 356 Query: 429 IDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGF 486 L V L EI L LK F + K+ HN K+D+ +L +YG+ + Sbjct: 357 RYLGV--------PQQLELEIVLDSLKPVFVDSQKSKVAHNFKFDEKILSKYGVKIVNQV 408 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQEH 541 D M+M+YVL S HD+ S++++ L +YT + + ++ + +D+I +V ++ Sbjct: 409 NDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTT--LAGTGRNQLTLDQIDIEKVAKY 465 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 A E++++ +L+ L +++L+ +Y ++ P+ +++ ME G++ID L + SA Sbjct: 466 AAEDADITFRLYNHFLKMLKDDEVLYSLYSNVEMPLTIILNNMEKVGVKIDAAKLIEQSA 525 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 + ++ LE YDL+G++FNLSSP QL +ILF K+ P KT GQ T+ + L Q+ Sbjct: 526 NLEDSIKELEIKCYDLAGQEFNLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQL 585 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 + I I+++R LSK+K+TY D LP ++ RVHT Y+ T+TGRL+S +PNL Sbjct: 586 -AEEYEIAALIMKYRHLSKLKNTYTDKLPKMLDVNG-RVHTSYNQTGTVTGRLSSSDPNL 643 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIPIK+ G+KIR+AFI+ +++ADYSQIELRI+AH++K L + F LDIH Sbjct: 644 QNIPIKSPEGRKIRQAFIAEQEFCVVAADYSQIELRIMAHLSKDKNLLKAFNQGLDIHSA 703 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 AAE+ G++++ V+ + RR AK INF +IYG+S F LA QL IPR EA +YI YF+R+P Sbjct: 704 TAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSAFGLAKQLEIPRGEAQEYIDVYFNRYP 763 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 + EY+ K F +QNGYVETI GRR++ +I+S RN ERAAINAP+QG+AADI Sbjct: 764 SVKEYMTTAKEFAKQNGYVETILGRRLYLPDISSKNVIQRNAAERAAINAPMQGTAADII 823 Query: 901 RRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 ++AMI V+ L+++ KM++Q+HDELVFEV + ++ + I ME + + L Sbjct: 824 KKAMIDVNTMILQEYNDDIKMVMQVHDELVFEVRKAKLNEITTKIKSIMETS----VKLD 879 Query: 960 VPLKVNIKVSNNWQE 974 VPL+VN+ +W + Sbjct: 880 VPLEVNVDSGESWDQ 894 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 108/279 (38%), Positives = 156/279 (55%), Gaps = 6/279 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RA++A P L+ G P AI G NML KL E + AV+FD Sbjct: 4 IVLVDGSSYLFRAYHALPNLTNSQ-GEPTGAIIGVINMLKKLPAMYDTE----YVAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+E+YP+YKANR + + L Q+ + + G P I G EADD+I T Sbjct: 59 PKGKNFRHEMYPEYKANRKAMDDELRVQIQPLHQIIENMGFPLIIKDGVEADDVIGTLAR 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 E++G+ V I + DKD+ QLV+ LYD++K D V++K+ I P++++ AL Sbjct: 119 DLEQQGYDVIISTGDKDMAQLVTDNVVLYDSMKNVTTDFAGVLEKYQIRPDQIIDYLALM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPGIP +G KTA LQEY ++E I+ N +I K EN+ E +LS KL Sbjct: 179 GDSSDNIPGIPKVGPKTAIKWLQEYQDIEGIIANQDKI-TGKVGENLRNNIELLKLSYKL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 ++ DV + + +E L ++ N L EF L+ Sbjct: 238 ATIKCDVELNLSIEDLKCKNANKEYLYEVFTRYEFKSLL 276 >gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 896 Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust. Identities = 235/615 (38%), Positives = 372/615 (60%), Gaps = 30/615 (4%) Query: 370 KIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428 KIV TK+ + V++L+ S +F TD+++ + + + ++ K+ ++ + Sbjct: 300 KIVATKEQLDDLVKELKNSSSFAFDTETDSLNTYEANLVGLSFCA---KEGRAYYIPLQH 356 Query: 429 IDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGF 486 L V L EI L LK F + K+ HN K+D+ VL +YG+ + Sbjct: 357 RYLGV--------PQQLELEIVLDILKPIFVDSQKSKVAHNFKFDEKVLSKYGVKIVNQV 408 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWL-----SYTRKEILKSRKSSIPIDKISDSQVQEH 541 D M+M+YVL S HD+ S++++ L +YT + + ++ + +D+I +V ++ Sbjct: 409 NDTMIMAYVLKSS-GKHDMDSLSKEHLGIEPIAYTT--LAGTGRNQLTLDQIDIEKVAKY 465 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 A E++++ +L+ L +++L+ +Y ++ P+ +++ ME G++ID L + SA Sbjct: 466 AAEDADITFRLYNHFLKMLKDDEVLYSLYSNVEMPLTIILNNMERIGVKIDATKLIEQSA 525 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 + ++ LE YDL+G++FNLSSP QL +ILF K+ P KT GQ T+ + L Q+ Sbjct: 526 NLEDSIKELEIKCYDLAGQEFNLSSPVQLREILFDKMGLPPVKKTAKGQASTSEEVLVQL 585 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 + I I+++R LSK+K+TY D LP ++ RVHT Y+ T+TGRL+S +PNL Sbjct: 586 -AEEYEIAALIMKYRHLSKLKNTYTDKLPKMLDVNG-RVHTSYNQTGTVTGRLSSSDPNL 643 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIPIK+ G+KIR+AF++ +++ADYSQIELRI+AH++K L + F LDIH Sbjct: 644 QNIPIKSPEGRKIRQAFVAEQEFCVVAADYSQIELRIMAHLSKDKNLLKAFNQGLDIHSA 703 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 AAE+ G++++ V+ + RR AK INF +IYG+S F LA QL IPR EA +YI YF+R+P Sbjct: 704 TAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSAFGLAKQLEIPRGEAQEYIDVYFNRYP 763 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 + EY+ K F +QNGYVETI GRR++ +I+S RN ERAAINAP+QG+AADI Sbjct: 764 SVKEYMTTAKEFAKQNGYVETILGRRLYLPDISSKNVIQRNAAERAAINAPMQGTAADII 823 Query: 901 RRAMISVHKS-LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 ++AMI V+ L ++ KM++Q+HDELVFEV + ++ + I ME + + L Sbjct: 824 KKAMIDVNTMILREYNDDIKMVMQVHDELVFEVRKAKLNEITTKIKSIMETS----VKLD 879 Query: 960 VPLKVNIKVSNNWQE 974 VPL+VN+ +W + Sbjct: 880 VPLEVNVDSGESWDQ 894 Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 109/279 (39%), Positives = 157/279 (56%), Gaps = 6/279 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RA++A P L+ G P AI G NML KL E + AV+FD Sbjct: 4 IVLVDGSSYLFRAYHALPNLTNSQ-GEPTGAIIGVINMLKKLPAMYNTE----YVAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+E+YP+YKANR + + L Q+ + + G P I G EADD+I T Sbjct: 59 PKGKNFRHEMYPEYKANRKAMDDELRVQIQPLHQIIENMGFPLIIKDGVEADDVIGTLAR 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 E++G+ V I + DKD+ QLV+ LYD++K DI V++K+ I P++++ AL Sbjct: 119 DLEQQGYDVIISTGDKDMAQLVTDNVVLYDSMKNITTDIAGVLEKYQIRPDQIIDYLALM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPGIP +G KTA LQEY ++E I+ N +I K EN+ E +LS KL Sbjct: 179 GDSSDNIPGIPKVGPKTAIKWLQEYQDIEGIIANQDKI-TGKVGENLRNNIELLKLSYKL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 ++ DV + + +E L ++ N L EF L+ Sbjct: 238 ATIKCDVELNLSIEDLKCKNANKEYLYEVFTRYEFKSLL 276 >gi|154487485|ref|ZP_02028892.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis L2-32] gi|154084003|gb|EDN83048.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis L2-32] Length = 895 Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust. Identities = 274/939 (29%), Positives = 461/939 (49%), Gaps = 85/939 (9%) Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV FD TFRN++ P YK R PE LL QLPL++ A G+ IE G+E DD Sbjct: 13 HLAVAFDVKGGTFRNQMLPQYKGTRDAAPEELLSQLPLIQQMLTALGVTYIEKPGYEGDD 72 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWG 173 +I T + ++ G+ ++S D+D QL++ T LY D++H V +K+ Sbjct: 73 VIGTLASMGDQAGYRTLVLSGDRDAFQLINDNITVLYP--GHHFKDLKHMTPDAVQEKYH 130 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---R 230 + P + L AL G++ DNIPG+PG+G AA + +YG LE I+ +A I KK R Sbjct: 131 VSPAQYPDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLEQIIEHADEISGKKGEALR 190 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVA 289 ENI E +L+R + L D+ + + + L + +L LEF + NRV Sbjct: 191 ENI----EQVKLNRSVNALVRDLDLGVSVSDLTFGQVDAGQLDDLFTKLEFGVRTKNRVL 246 Query: 290 TTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQK 349 T++ D + D++ + G+ +++ + +T N Q+ Sbjct: 247 KTFNADKPSG-----DVHESSKLGLPHVEDVNDPHVV----------ETWVQNHFPVVQE 291 Query: 350 LFLERLQKLS----QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSK 405 ER ++ S ++ DS T+ + K Q W E ++ M A H + Sbjct: 292 HLHERHERSSNDIPEFGFEIDSSTRCTD-KVKQSWTLYAEGTSKPGEASLSALMIAVHGE 350 Query: 406 PIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKI 465 I I + + +++ L++ F+ H + Sbjct: 351 AIRI---------------------------------DVFSPDMVQCLQRLFDRYHHSMV 377 Query: 466 GHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-YTRKEILKS 523 H K +L G+ + D L Y+ + + A +L + + + Sbjct: 378 VHGYKEHAHLLGSIGVELPEPLFDTKLAGYLAHPDFHADTLEQAAAHFLDLHIEAQAEAA 437 Query: 524 RKSSIPIDKI--SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + ++ D+ +DS+ E + + ++ L L L + + + ++ P+ V+ Sbjct: 438 TQGTLDFDEPEENDSKNGELILTRTAIVGLLAEYLAGVLDKREQFGLLKSIELPVSQVLH 497 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME G Q+D L Q+ +++ + +E + +GE+ NL SPKQL ILF + Sbjct: 498 GMEQVGAQVDMTRLVQMRDQLAADAAQAQETAWQFAGEQVNLQSPKQLQKILFEDMGLKP 557 Query: 642 GAKTKTGQWKTTAQDLEQIN--CGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKR 695 KTK+G + T A L+ + DN + +L R+ +K+K +L + N+ Sbjct: 558 TKKTKSGSYTTNAAALQTLRDRSYDNDRACQFLDALLMHREKNKLKQI-VQTLIDATNRH 616 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIE 754 R+HT + TGRL+S++PNLQNIP + G++IR AF+ + L+S+DYSQ+E Sbjct: 617 DGRIHTTFEQTVAATGRLSSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVE 676 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LRI+A ++ L + F + D H+ VA+ ++G+ ++ ++ R H K +++ + YG+S Sbjct: 677 LRIMADLSGDEALIEAFRSGKDFHKYVASLVYGIPVDDITSDQRSHVKAMSYGLAYGLST 736 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 + LA QL+I EA +YF F +HEY+E + R+ GY ETIFGRR ++ + S Sbjct: 737 YGLAQQLKIKPKEAESLKNQYFATFGKVHEYLESLVSSAREKGYTETIFGRRRYFPGLKS 796 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 P ++R+ ERAA+NAPIQGSAADI + AMI + +L++ L ++++LQIHDELV E+ Sbjct: 797 PNRAVRDAAERAALNAPIQGSAADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAP 856 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E A+ ++ +ME A + + VPL V+ + ++WQ Sbjct: 857 GEEKQATALVKDAMEHA----VTMAVPLDVSTGIGSDWQ 891 >gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] Length = 902 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 219/515 (42%), Positives = 316/515 (61%), Gaps = 10/515 (1%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519 KIGH++K +V ++GI +RG D M+ +Y+LD G+ ++ I +A + L + ++ Sbjct: 391 KIGHDLKTAWIVFKKHGIELRGIAFDTMVAAYLLDPGKQNYGIDRVAAECLGENIDSYED 450 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 + KS + D I + ++ ++ ++ +L+ KL +L ++E+++ P+I V Sbjct: 451 VTGKGKSQVGFDTIDIGRAAAYSCAAADAARRMHPVLKRKLDESRLTELFEKIELPLITV 510 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 +++ME GI D + L+ +S + K L + IYDL+ EKFN+ SPKQL ILF KL Sbjct: 511 LARMEFRGITADAEKLESLSIDFQKALDRTADTIYDLAKEKFNIQSPKQLAYILFEKLGL 570 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 KTK+G T LE++ ++PI ++L +R L+K+K TYAD+L IN RT R+ Sbjct: 571 RVVKKTKSGP-STDMAVLEELAL-EHPIADHVLVFRTLAKLKGTYADALGKLINPRTGRI 628 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 HT Y+ TGRL+S +PNLQNIPI+T+ G+KIR AFI P L+SADYSQIELRILA Sbjct: 629 HTSYNQTVAATGRLSSSDPNLQNIPIRTEEGRKIRSAFIPAPGWLLLSADYSQIELRILA 688 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H +K L + F + DIHR AAE+FGV+ +V+P+MRR AKTINF IIYG+ PF LA Sbjct: 689 HCSKDEHLLEAFRDDEDIHRRTAAEMFGVSPIEVTPEMRRQAKTINFGIIYGMGPFGLAQ 748 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 +LRI A I +YF + G+ +I+ T R+ GY ET+ GRR E+ S +I Sbjct: 749 RLRISTKTARTAIDKYFQGYRGVRRFIDTTIELARRLGYSETLLGRRRFIPELQSRNKTI 808 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R + ER AIN P+QG+AAD+ ++AMI +L L T MLLQ+HDELVFE P EE+ Sbjct: 809 RQLGERLAINTPLQGTAADLIKKAMIDAEDALNGSGLRTVMLLQVHDELVFETPREELAA 868 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 A +++ ME L VPLKV + +NW E Sbjct: 869 AQELVRRVMEDVW----KLDVPLKVELGWGDNWAE 899 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 117/285 (41%), Positives = 170/285 (59%), Gaps = 14/285 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 +LVDGSS+IYRA+YA L+ G P A+ GF ML K+++ + + I V+FD Sbjct: 8 FYLVDGSSYIYRAYYAVSRLTNSR-GFPTGAVLGFAQMLDKVVREKKPDYIC----VVFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+E+Y YKA R K PE ++ Q+P ++ + GIP +E+ G+EADD+IAT T+ Sbjct: 63 APGPTFRHEMYAPYKATRQKAPEDMIAQIPYIKDLVRFRGIPQMELPGYEADDLIATLTH 122 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A ++ V ++S+DKDL QL+ P +D K+ V ++G+PP +MV AL Sbjct: 123 WAVEQDIEVVVVSSDKDLHQLIDDPVVRQWDPQKDRVFMEWEVEDRYGVPPGRMVDYLAL 182 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DN+PG+ GIG KTA LLQE+G+L+ I N +R+ R+ + ++ E A LSR+ Sbjct: 183 VGDSSDNVPGVKGIGDKTARQLLQEWGSLDRIYANLARVGSASVRDKLEKHREEALLSRR 242 Query: 246 LVMLRTDVPITIPLEHLILEDCNGP----RLISFLKALEFTKLIN 286 LV R DVP+ LE GP +LI + LEF L++ Sbjct: 243 LVSFREDVPVERKLEAF----APGPPLKSQLIGLFEELEFRSLLD 283 >gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47] gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47] Length = 850 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 217/495 (43%), Positives = 314/495 (63%), Gaps = 27/495 (5%) Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541 ++R ED+M+ SYVLDS RSS+++ ++ ++SY ++ +K D +V Sbjct: 379 NIRNCEDVMIASYVLDSTRSSYELETL---FISYLNTDLAAVKK---------DKKV--- 423 Query: 542 AIENSNVIL--QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 ++VIL +LW L + + VY +++P+I ++ +ME G ++D+D L Q + Sbjct: 424 ----TSVILLKRLWDELSSLIDLNSCQFVYTNIERPLIPILYEMEKAGFKVDRDALLQYT 479 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 EI +L+LE+ IY ++GE FN++SPKQL ILF KLK P KTKTG + T A+ LE+ Sbjct: 480 KEIESKILNLEKQIYQIAGEWFNINSPKQLSYILFEKLKLPVIKKTKTG-YSTDAEVLEE 538 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + + I+ IL++R +KI +TY L IN + RVHT + T TGRLAS +PN Sbjct: 539 L-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQTGTATGRLASSDPN 597 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIP+K D G+ IR+ FI LI ADYSQIELRILAHI++ L F+N++DIH Sbjct: 598 LQNIPVKYDEGRLIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHS 657 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAE+FGV+I+ V+P+MR AK +NF I+YGIS + LA ++I R EAA++I RYF R+ Sbjct: 658 QTAAEVFGVDIDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERY 717 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 P + EY++ F R NGYV T+F RR + +I S + RN ER A+N+PIQGSAADI Sbjct: 718 PKVKEYLDNIVKFARDNGYVLTLFNRRRYVKDIKSANRNARNYAERIAMNSPIQGSAADI 777 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + AMI V++ L+++ L +K++LQ+HDEL+ E P EE +I+ ME A + L+ Sbjct: 778 MKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEIVKREMENA----VALK 833 Query: 960 VPLKVNIKVSNNWQE 974 VPL V +K NW E Sbjct: 834 VPLVVEVKEGLNWYE 848 Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 158/291 (54%), Gaps = 12/291 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L + DG+S +YRAF+A P L+ + +P NAI GF N++ K L+ + + AV FD Sbjct: 3 LVIFDGNSILYRAFFALPELTTSSN-IPTNAIYGFINVILKYLEQENPD----YVAVAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 R Y +YKANR +P+ L Q+P VR A IP IE +G+EADD+I + Sbjct: 58 KKGRQARKSEYEEYKANRKPMPDNLQVQIPYVREILYALNIPIIEFEGYEADDVIGSLVN 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180 + + + II+ DKD +QL+ + +D E+ E+V +K+G+ ++ Sbjct: 118 MFKNTDLDIVIITGDKDTLQLLDKNVVVKIVSTKFDKTTEDLYTAENVKEKYGVWANQVP 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DNIPG+ GIG K+A LL+EY +LE I N + IK RE + + A Sbjct: 178 DYKALVGDQSDNIPGVKGIGAKSAQKLLEEYSSLEEIYQNLNNIK-GSIREKLEASKDIA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 LS++L + D+P+ I LE L + N RL L LEF +I R+ + Sbjct: 237 FLSKRLATIVCDLPLNIKLEDLRTREWNKKRLYEILLQLEFKSIIKRLGLS 287 >gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] Length = 920 Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust. Identities = 215/535 (40%), Positives = 330/535 (61%), Gaps = 12/535 (2%) Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHD 504 ++ ++ + +ENE+ LK+G NIKYD VL +YGI ++G D M+ Y++ H+ Sbjct: 390 AEKFVNIFRPLYENENILKVGQNIKYDYEVLAQYGIDIKGKMFDTMIAHYLIQP-ELHHN 448 Query: 505 IASIAQKWLSYTR---KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 + +A+ L Y E++ ++ K + +S + + E+A E++++ LQL+ +L PKL Sbjct: 449 MDYMAETLLGYKTVHIDELIGAKGKHQKNMRDLSPTDIYEYASEDADITLQLYKVLEPKL 508 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 ++ +++ P++ V++ ME+ G+ +D D L + S + + E IY+ + EK Sbjct: 509 KEVNAEDLFWKIEMPLVRVLADMEMNGVCLDTDALAETSKIFTDRMNEYEALIYEQASEK 568 Query: 621 FNLSSPKQLGDILFTKLK-FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 FN+SSPKQ+GDILF K++ KTKTGQ+ T+ + L+ + PI+ NIL++R + K Sbjct: 569 FNISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLEAS-APIVGNILKYRGIKK 627 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 + STY D+LP INKRT +HT ++ A T TGRL+S +PNLQNIP++TD G++IR+ FI Sbjct: 628 LLSTYIDALPKLINKRTGHIHTSFNQALTATGRLSSSDPNLQNIPVRTDDGKEIRKCFIP 687 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 P SADYSQIELRI+AH+++ + + F + DIHR AA+I+ V +E+VS R+ Sbjct: 688 EPKCLFFSADYSQIELRIMAHLSQDENMMEAFRSGHDIHRATAAKIWHVPMEEVSDAQRK 747 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK NF IIYGI+ + LA ++ IP EA + I+ YF FP + ++EK K R+ GY Sbjct: 748 KAKQANFGIIYGITTYGLAQRMGIPNGEAKELIEGYFKTFPSVKAFMEKAKQTAREKGYA 807 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 ET+F RR + +INS ++R ER AINAPIQG+ ADI + AMI + + + +K Sbjct: 808 ETLFNRRRYLSDINSKNGTVRGFAERNAINAPIQGTEADIIKVAMIRIWERFRRENIRSK 867 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+LQ+HDEL F V EE +I++ M+ A P L VPL + NNW E Sbjct: 868 MILQVHDELNFSVFPEEKEKVERIVIEEMQ-AAYP---LNVPLVADAGWGNNWLE 918 Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 108/293 (36%), Positives = 162/293 (55%), Gaps = 25/293 (8%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + I+R++YA P ++ K GL +AI GF N L +++ KE+ +H V Sbjct: 4 LFLIDAYALIFRSYYAFIKNPRINSK--GLNTSAIMGFFNTLNEVIT---KEN-PTHIGV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRNE +P+YKA R PE + +P +R +A IP ++ +GFEADD+I T Sbjct: 58 AFDI-GETFRNEAFPEYKAQRDATPEDIKAAVPYIREILEAMHIPTLQAEGFEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL--------YDTVKEEKIDIEHVIKKWGIP 175 +G +++ DKD QL+ + Y+ V E +I +K+GIP Sbjct: 117 LATRFGADGIDTFMLTPDKDYGQLIGDHIYMYRPQHGGGYEVVGEPQIQ-----EKYGIP 171 Query: 176 -PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 ++V L AL GDS DN PG PG+G KTAA L+ E+G+++ +L IK K RE + Sbjct: 172 SAAQVVDLLALMGDSADNFPGCPGVGEKTAAKLINEFGSIDEMLARTGEIK-GKLREKVE 230 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 + ++S+ L +R DVPI + L+ L LE+ N +L LEF L+N+ Sbjct: 231 SHIHDIKMSKFLATIRRDVPIEVSLDELKLEEPNEEKLREIFTELEFRTLLNK 283 >gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002] gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002] Length = 850 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 220/511 (43%), Positives = 319/511 (62%), Gaps = 28/511 (5%) Query: 469 IKYD-KLVLHRYGI----SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523 I YD K + H+ + +++ ED+M+ SYVLDS RSS+++ ++ ++SY EI Sbjct: 361 IVYDLKNIFHQLNLEDTNNIKNCEDVMIASYVLDSTRSSYELETL---FVSYLNTEIEAV 417 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 RK + I + ++ +LW L + + +YE +++P+I V+ +M Sbjct: 418 RK--------------DKKIVSVVLLKRLWDELLRLIDLNSCQFLYENIERPLIPVLYEM 463 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E TG ++D+D L Q + EI +L LE IY ++GE FN++SPKQL ILF KLK P Sbjct: 464 EKTGFKVDRDALIQYTKEIENKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIK 523 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KTKTG + T A+ LE++ + I+ IL++R +KI +TY L IN + RVHT + Sbjct: 524 KTKTG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTF 581 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 T TGRLAS +PNLQNIP+K D G+ IR+ F+ LI ADYSQIELRILAHI++ Sbjct: 582 IQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISE 641 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L F+N++DIH AAE+FGV+I V+P+MR AK +NF I+YGIS + LA ++I Sbjct: 642 DERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKI 701 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 R EAA++I RYF R+P + EYI+ T F R NG+V T+F R+ + +I S ++R Sbjct: 702 SRKEAAEFINRYFERYPKVKEYIDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYA 761 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE +I Sbjct: 762 ERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEI 821 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME A + L+VPL V +K NW E Sbjct: 822 VKREMENA----VTLKVPLVVEVKEGLNWYE 848 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 163/291 (56%), Gaps = 12/291 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L + DG+S +YRAF+A P L+ ++ +P NAI GF N++ K L+ + + + AV FD Sbjct: 3 LVIFDGNSILYRAFFALPELTTSNN-IPTNAIYGFVNVILKYLEQEKPD----YVAVAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 R Y +YKANR +P+ L Q+P VR AF IP IE +G+EADD+I + Sbjct: 58 KKGREARKSEYQEYKANRKPMPDNLQVQIPYVREILYAFNIPIIEFEGYEADDVIGSLVN 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180 + G + II+ D+D +QL+ + +D E+ IE++ +K+G+ ++ Sbjct: 118 QFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDRTMEDLYTIENIKEKYGVWANQVP 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DNIPG+ GIG K+A LL+EY +LE I N +IK RE + + A Sbjct: 178 DYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKSSI-REKLEAGKDMA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 LS++L + D+P+ + LE L ++ N RL L LEF +I R+ + Sbjct: 237 FLSKRLATIVCDLPLNVKLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLS 287 >gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL] gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL] Length = 850 Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust. Identities = 213/493 (43%), Positives = 311/493 (63%), Gaps = 23/493 (4%) Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541 ++R ED+M+ SYVLDS RSS+++ ++ +L+ + + K +K + I Sbjct: 379 NIRNCEDVMIASYVLDSTRSSYELETLFMSYLNTDLEAVKKDKKVTSVI----------- 427 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 ++ +LW L + + VY +++P+I ++ +ME G ++D+D L Q + E Sbjct: 428 ------LLERLWDELSSLIDLNSCQFVYTNIERPLIPILYEMEKAGFKVDRDALLQYTKE 481 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 I +L+LE+ IY ++GE FN++SPKQL ILF KLK P KTKTG + T A+ LE++ Sbjct: 482 IESKILNLEKQIYQIAGEWFNINSPKQLSYILFEKLKLPVIKKTKTG-YSTDAEVLEEL- 539 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 + I+ IL++R +KI +TY L IN + RVHT + T TGRLAS +PNLQ Sbjct: 540 FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTFIQTGTATGRLASSDPNLQ 599 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP+K D G+ IR+ FI LI ADYSQIELRILAHI++ L F+N++DIH Sbjct: 600 NIPVKYDEGRLIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQT 659 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAEIFGV+I+ V+P+MR AK +NF I+YGIS + LA ++I R EAA++I RYF R+P Sbjct: 660 AAEIFGVDIDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPK 719 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + EY++ F R+NGYV T+F R+ + +INS + R+ ER A+N+PIQGSAADI + Sbjct: 720 VKEYLDNIVKFARENGYVLTLFNRKRYIKDINSTNRNTRSYAERIAMNSPIQGSAADIMK 779 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI V++ L+++ L K++LQ+HDEL+ E P EE +I+ ME A + L+VP Sbjct: 780 LAMIKVYQKLKENNLKAKIILQVHDELLIEAPYEEKDIVKRIVKTEMENA----VALKVP 835 Query: 962 LKVNIKVSNNWQE 974 L V +K NW E Sbjct: 836 LVVEVKEGLNWYE 848 Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 159/291 (54%), Gaps = 12/291 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L + DG+S +YRAF+A P L+ + +P NAI GF N++ K L+ + + AV FD Sbjct: 3 LVIFDGNSILYRAFFALPELTTSSN-IPTNAIYGFINVILKYLEQESPD----YVAVAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 R Y +YKANR +P+ L Q+P VR A IP IE +G+EADD+I + Sbjct: 58 KKGRQARKSEYEEYKANRKPMPDNLQVQIPYVREILYALNIPIIEFEGYEADDVIGSLVN 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180 + + + II+ DKD +QL+ + +D E+ E+V +K+G+ ++ Sbjct: 118 MFKNIDLDIVIITGDKDTLQLLDKNVVVKIVSTKFDKTTEDLYTAENVKEKYGVWANQVP 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DNIPG+ GIG K+A LL+EY +LE I N +IK RE + + A Sbjct: 178 DYKALVGDQSDNIPGVKGIGAKSAQKLLKEYSSLEEIYQNLDKIK-GSIREKLETGKDMA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 LS++L + D+P+ + LE L ++ N +L L LEF +I R+ + Sbjct: 237 FLSKRLATIVCDLPLNVKLEDLRTKEWNKEKLYEILVQLEFKSIIKRLGLS 287 >gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] Length = 940 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 222/535 (41%), Positives = 336/535 (62%), Gaps = 15/535 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIA 506 ++L++ +N KIG NIK+D LV+ +YGI + G D M+ Y+L+ H + Sbjct: 411 KVLAHFSPALQNPKSFKIGQNIKFDILVVRKYGIRIAGPLFDTMIAHYLLNP-ELRHGMD 469 Query: 507 SIAQKWLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561 +A+ +L Y R E L K RK + + + QV E+A E++++ L+L P L Sbjct: 470 YLAETYLKYKTVRIEELIGPKGRKQ-LCMRDVPIPQVAEYAAEDADITLKLKNYFAPCLD 528 Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 E L ++ ++ P+I V+++ME TG+ +D LKQ S E++ L LE+ IY+L+G KF Sbjct: 529 KEGLESLFYDIEMPLIYVLAEMEYTGVTLDTIALKQSSEELTTALKKLEKEIYELAGIKF 588 Query: 622 NLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 N++S +Q+G++LF LK AK TKTG + T+ + LE++ +P+++ +LE+R L K+ Sbjct: 589 NINSARQVGEVLFDHLKIEEKAKKTKTGSYSTSEEILEKMRS-KHPVVEKLLEYRGLKKL 647 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 STY D+LP IN T ++HT Y+ A T TGRL+S PNLQNIP++ +LG++IR+AF + Sbjct: 648 LSTYIDALPELINPETGKIHTSYNQAVTSTGRLSSTNPNLQNIPVRDELGREIRKAFTAE 707 Query: 741 PTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 + SADYSQIELRI+AH+++ + + F + DIH AA+I+G+ +E+V+ MRR Sbjct: 708 NEDCIFFSADYSQIELRIMAHLSQDAHMIEAFRSGADIHAATAAKIYGIPVEEVTSDMRR 767 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AKT NF IIYGIS F LA +L IPR+E+ + I+ YF +P I Y++++ ++ GYV Sbjct: 768 KAKTANFGIIYGISVFGLAERLNIPRAESKELIEGYFKTYPDIRAYMDESIEVAKEKGYV 827 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 ETI+ R+ +INS + +R ER AINAPIQGSAADI + AM+ + E L +K Sbjct: 828 ETIYKRKRFLPDINSHNAIVRGYAERNAINAPIQGSAADIIKVAMVRIFNRFETEGLKSK 887 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+LQ+HDEL F V ++E+ QI++ ME A I L+VPL + NW E Sbjct: 888 MILQVHDELNFNVYKDEMEKVKQIVLDEMENA----IQLQVPLIADCGEGVNWLE 938 Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 117/292 (40%), Positives = 162/292 (55%), Gaps = 20/292 (6%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYR++YA P ++ K G+ +AI GF N L +L K +H AV Sbjct: 3 LFLIDAYALIYRSYYAFIKNPRINSK--GMNTSAIFGFINSLEDVL----KRENPTHIAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E Y YKA R + PE + +P ++ +A+ IP +E+ +EADD+I T Sbjct: 57 GFDPKGPTFRHEAYEQYKAQRQETPEDIRKSVPFIKDIIEAYNIPILEVPRYEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKIDIEHVIKKWGIPP-EKM 179 AEKEGF V +++ DKD QLVS +Y E + I V+ K+G+ +++ Sbjct: 117 VAKQAEKEGFEVYMMTPDKDYGQLVSEHIFMYRPRFGGDYEIMGIPEVLGKYGLTSVDQV 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEY 236 + L L GDS DNIPG PG+G KTA LL E+G +EN+L N ++K QKK EN Sbjct: 177 IDLLGLMGDSSDNIPGCPGVGEKTAQKLLAEFGTIENLLENTDKLKGSLQKKVTEN---- 232 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E R S+ L ++TDVPI I E N RL+ LEF INR+ Sbjct: 233 TEQIRFSKFLATIKTDVPIQFDAAKCIREKVNEERLVEIYTELEFRTFINRM 284 >gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076] gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076] Length = 865 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 218/594 (36%), Positives = 340/594 (57%), Gaps = 32/594 (5%) Query: 382 QKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTG 441 ++ IGSA + + + P+A+AI+ + + F ++ I D ++ ++ Sbjct: 301 RRYSVIGSAGE--LREWLAGAAGTPVAVAIT---KSTEGEFALDMIAAD-TIGLARKRGE 354 Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGR 500 +T E++ LK + E+ +K+ ++K L L R GI RGF D+M+ ++LD+ Sbjct: 355 ACAVTSELIVELKPWLEDAAVVKVACDVKSAVLQLARLGIEARGFGHDVMIYGFLLDADP 414 Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 + + A + L D ++ A +++++ L+L+ L P + Sbjct: 415 GGCGLENQAHRRL---------------------DLKLGGAAEQHADITLELYEQLAPAI 453 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 L +Y+ ++ P+ V+++ME TGI+ID LK++S + + L I+ L+G+ Sbjct: 454 DGRGLRKLYDEIELPLTRVLARMERTGIRIDGAELKRLSVLMESQISGLTAEIHALAGKP 513 Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 FN+SSP+QLG +LF L P+ K G+ +TA D+ ++ I++ +LE+RQL+K+ Sbjct: 514 FNISSPQQLGKVLFEDLNLPAPVKYGKGKTISTAADVLDELAAEHEIVRKVLEYRQLTKL 573 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 K TY D+LP I+ T R+HT ++ TGRL+S PNLQNIPI+T LG++IR AF+ Sbjct: 574 KGTYVDALPALIDPATGRLHTSFNQTGAATGRLSSSNPNLQNIPIRTSLGREIRAAFVPR 633 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 KL+ ADYSQIELR+LAH++ L Q F DIH AAE+ GV V+P+ RR Sbjct: 634 DGWKLLVADYSQIELRLLAHMSGDELLVQAFREGEDIHTRTAAEVMGVPPLMVTPEARRD 693 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 AK +NF I+YGIS F LA QL I R+EA YIK YF R+ G+ +IE+T VR+ G + Sbjct: 694 AKAVNFGIVYGISAFGLAAQLGIGRAEAERYIKNYFARYVGVKRFIEETIAEVRKTGVTK 753 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 T+FGR EIN + R ER A+N+P+QG+AAD+ + AM+ + +L M Sbjct: 754 TLFGRERPIPEINGRNPNARGFAERTAVNSPLQGTAADLIKLAMVRIDAALAAGGFQAAM 813 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LLQ+HDELVFE P EE+ S+++ ME AC L+VPL V++ +NW++ Sbjct: 814 LLQVHDELVFECPPEELDEVSRMVKREMEGAC----ELKVPLVVDVGSGDNWRD 863 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 109/292 (37%), Positives = 166/292 (56%), Gaps = 9/292 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 LFL+D FI+RA++A R G A+ F NML KL K+ + A Sbjct: 10 LFLIDTFGFIFRAYHARARTGAPPMRTSTGFSTEAVYIFNNMLRKL----SKQHDPPYVA 65 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 IF+ T R + + +YKANR + P LL Q+P VR +A IP +E GFEADD+I Sbjct: 66 AIFESGEATHRVQEFAEYKANRTETPPDLLDQIPFVRRVLEAMRIPILEYPGFEADDVIG 125 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVC 181 T T AE EG V I+S+DKD++QLV+ + + K++K+ + E V G+PP ++ Sbjct: 126 TITRRAEAEGLDVVIVSSDKDMLQLVTEHVSMLNPAKDDKLYNPEEVKTFMGVPPVQVAD 185 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL GDS+DNIPG PGIG K A +L+++G++E L A+ +++K RE++ + R Sbjct: 186 LLALMGDSVDNIPGAPGIGDKGAKQILEKFGSIEAALERAAEVERKVYRESLQNNVDRIR 245 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 +S++L + TDVPI L+ + + + L + K +EF L+ + + D Sbjct: 246 MSKRLATISTDVPIEFTLDAVKAQAPDPGLLKAIYKEMEFHSLLKELGPSED 297 >gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265] gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265] Length = 940 Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust. Identities = 221/543 (40%), Positives = 327/543 (60%), Gaps = 12/543 (2%) Query: 439 STGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496 S + L++E + L+ EN K G N+KYD LVL YG+ + D ML SY+L Sbjct: 401 SFARTGLSREKTIELLRPLLENPAIAKTGQNLKYDLLVLKNYGLELSPISFDTMLASYLL 460 Query: 497 DSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553 + ++H++ +A + L + E+ + K+ + ID + ++ ++A +++++ L+L Sbjct: 461 NP-ETTHNLDDLAARHLKLRTTKYDELTGTGKTKLHIDDVEPRKLTDYACQDADIALRLT 519 Query: 554 LLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612 +L+ +L E L H+ E L+ P+I V+ ME GI ID L S + LL L+E Sbjct: 520 AILQKELAEEPNLRHIGETLEFPLISVLGAMESQGISIDTRHLAATSESVGTQLLQLKET 579 Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672 I+ +GE FN+ SPKQL ILF L P+ TKTG + T + LE++ +P++ N+L Sbjct: 580 IHSAAGESFNIDSPKQLSRILFEVLGLPTKKTTKTG-FSTNVEVLEEL-APLHPVVGNLL 637 Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732 E+R L KIK+TY D+LP +N RT RVHT ++ T TGRL+S PNLQNIPI+T LG++ Sbjct: 638 EYRSLQKIKTTYIDALPKMLNPRTGRVHTSFNQHITATGRLSSSNPNLQNIPIRTPLGRE 697 Query: 733 IRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791 IR+AFI + P L+SADYSQIELRI A I+ L + F N DIH A IF + Sbjct: 698 IRKAFIPTDPRNLLLSADYSQIELRIAAEISGDGKLIEAFRNREDIHSATARVIF--DTP 755 Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851 ++P MRR AK +NF ++YGI PF L+ +L IPRSEAAD I Y ++PG+ E ++ K Sbjct: 756 DITPDMRRKAKEVNFGVLYGIQPFGLSKRLNIPRSEAADIISTYTAKYPGLFEALDTIKT 815 Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911 R+ G+V T+ GRR + ++S +++ ERAA+N PIQG+AADI + AMI K + Sbjct: 816 TGREKGFVTTLLGRRRYLPNLSSRNGNLQKAAERAAMNTPIQGTAADIIKCAMILCSKRM 875 Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 ++H + + MLLQ+HDELVFE EE S ++ +M +A VP++V+ N Sbjct: 876 KEHDMQSSMLLQVHDELVFETTPEEQENLSALVEEAMIEAAGMCGMKTVPVEVDCGTGKN 935 Query: 972 WQE 974 W E Sbjct: 936 WLE 938 Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 98/273 (35%), Positives = 144/273 (52%), Gaps = 22/273 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 LFL+DG + +YRA YA L R G P A+ GF + L K+ + + A Sbjct: 29 LFLIDGMALLYRAHYA---LQRSGMQNRSGQPTGALFGFLSTLLKIFETYHP----GYLA 81 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDII 121 FD TFR+++Y YKANR PE +L Q+ PL +L +A GIP ++ G+EADD+I Sbjct: 82 AAFDSREKTFRHDLYDQYKANRQAPPEDMLAQIEPLFKL-LEALGIPILKTPGYEADDLI 140 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPE 177 + + E + + I++ DKDL QLV + K + + E + +++G+PP Sbjct: 141 GSAARLFEDQ-CNIFIVTPDKDLAQLVHGGVSMLRPTKNDSELQLLTPEGIAEQFGVPPA 199 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 + LTGD+ DNIPG GIG KTAA LL +G+LEN+ I K R ++ E+ Sbjct: 200 QFTQFLTLTGDTSDNIPGAKGIGPKTAATLLGRFGSLENVYEKLEEIAPKT-RASLEEFR 258 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGP 270 L LV +RTD+ + + L+ L C P Sbjct: 259 SRLPLITDLVTIRTDLELPVTLQELA---CTTP 288 >gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus] Length = 878 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 210/501 (41%), Positives = 322/501 (64%), Gaps = 16/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEIL--KSRKSSIPIDKIS 534 GI +RG E D+++ SY+L+ +S+ D+AS+A+ ++++ E + K K ++P +K Sbjct: 386 GIELRGIEFDLLIASYLLNPSQSTEDVASVAKTKQYMAVQSDEAVYGKGAKQTVPEEK-- 443 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + EH + + I L L + ++ L+ P+ ++++ME TG+++D + Sbjct: 444 --ALAEHLVRKAAAIRALEKEFIHDLQENEQYALFTDLELPLSSILAEMEFTGVKVDVER 501 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 LK++ E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P KTKTG + T+A Sbjct: 502 LKEMGEELTEQLRAVEQEIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTG-YSTSA 560 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE++ + I++ IL +RQL K++STY + L ++ T +VHT ++ A T TGRL+ Sbjct: 561 DVLEKL-APQHEIVEKILHYRQLGKLQSTYIEGLLKVVHCDTHKVHTIFNQALTQTGRLS 619 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 S EPNLQNIPI+ + G+KIR+AF+ S P + SADYSQIELR+LAHIA L F + Sbjct: 620 STEPNLQNIPIRLEEGRKIRQAFVPSKPDWVIFSADYSQIELRVLAHIANDENLIDAFRH 679 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 LDIH A +IF V ++V+P MRR AK +NF I+YGIS + L+ L IPR EAA++I+ Sbjct: 680 DLDIHTKTAMDIFHVTADEVTPNMRRQAKAVNFGIVYGISDYGLSQNLNIPRKEAAEFIR 739 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 RYF FPG+ +Y+E +Q GYV T+ RR + +I S ++R+ ER A+N PIQ Sbjct: 740 RYFEIFPGVKQYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQ 799 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 GSAADI ++AMI + L+ KL +MLLQ+HDEL+ E P+EE+ QI+ ME A Sbjct: 800 GSAADIIKKAMIDLADRLKQEKLQARMLLQVHDELILEAPKEEVKRLQQIVPEVMENA-- 857 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 I L+VPL ++ + W + Sbjct: 858 --IQLKVPLLIDFRFGPTWDD 876 Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 116/294 (39%), Positives = 174/294 (59%), Gaps = 11/294 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M+ + L + G S YRAF+A PLL G+ NA+ GF ML K+L+ + +H Sbjct: 1 MRVKKKLVFIYGKSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLMKILEEEK----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR++ + +YK R + P L Q PL+R QA+ I + E++ +EADDI Sbjct: 56 MLVAFDAGKTTFRHKTFTEYKGGRQQTPPELSEQFPLLRELLQAYQICSYELENYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIP 175 I T + AEKEGF V IIS D+DL QL S + D K+ D+E V +K+G+ Sbjct: 116 IGTLSAKAEKEGFEVKIISGDRDLTQLASDHVTV-DITKKGITDVESYTPETVREKYGLT 174 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PE+++ L+ L GD DNIPG+PGIG KTA LL+++G++ENIL + +I K +EN+ + Sbjct: 175 PEQIIDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGSVENILASIEQINGNKLKENLEK 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 Y + A +S++L + D PI + LE + + ++I+ K L F L+++VA Sbjct: 235 YRDLALMSKQLATISRDAPIELSLEDIEYHGQDVDKVIALFKELGFNSLLDKVA 288 >gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] Length = 889 Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust. Identities = 232/639 (36%), Positives = 359/639 (56%), Gaps = 30/639 (4%) Query: 349 KLFLE-RLQKLSQ-YPINND----SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402 K+F E + LS+ YP+ D YT + +D++ + LE G + T +D Sbjct: 266 KIFSELEFRDLSKAYPVKTDLSKKEYTALTTEEDLEALAENLEKAGVFALDTETTGLDPM 325 Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVH---TSQDSTGKNTLTKEILSYLKKFFEN 459 + + ++ S ++ + F H + D G ++ L L N Sbjct: 326 QASLVGMSFS---------YEADRAFYAPLTHDYLGAPDQVG----VEKALEILGPVLSN 372 Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY--- 515 KIG NIKYD +VL R+G ++G D M+ SY+L+ SH + IA + L + Sbjct: 373 PEIKKIGQNIKYDWIVLARHGADLQGVAFDTMVASYLLNPSHRSHGLDQIAMELLEHRMI 432 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 + +E+ +I +++ + +A E+++V Q++ LL+PKL +LL +++ ++ P Sbjct: 433 SYEEVCGKGAKAITFNQVPLEKAVPYACEDADVTFQIYGLLQPKLEKNQLLELFKTVEMP 492 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 ++ V+ +ME+ GI +D D L+ +S E + S E+ IY L+GE+FN++SP+QLG ILF Sbjct: 493 LVRVLVKMEMEGITVDSDQLQALSKEFQGGMESAEKEIYQLAGEEFNIASPQQLGHILFE 552 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 KL P KTK +T + + + IL +R ++K+KSTY D+L + I+ Sbjct: 553 KLGLPVQKKTKKKTGYSTDVKVLTTLASQHELPALILRYRSVAKLKSTYVDALQSLIHPE 612 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 T RVHT ++ T TGRL+S PNLQNIPI+T G++IR AFI ++ ADYSQIEL Sbjct: 613 TGRVHTSFNQNVTATGRLSSSNPNLQNIPIRTPEGKRIREAFIPRKGWEMFCADYSQIEL 672 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RILAH+++ L ++F++ DIH+ A+E+F + E V+ +MRR AK INF IIYG+ F Sbjct: 673 RILAHLSQDEFLIELFKSGEDIHKRTASEVFELFPEFVTDEMRRQAKAINFGIIYGMGAF 732 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 RL+ ++ + R A YI YF + G+ ++IE+T + G +T+ GR +IN+ Sbjct: 733 RLSNEIGVSRKTAQRYIDNYFVTYKGVKKFIEETIALAHETGMTKTLLGRTRPLPDINAK 792 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + ER A N PIQG+AAD+ + AMI V +LE+ + TKMLL +HDELVFE P E Sbjct: 793 NRVLMEAAERIATNTPIQGTAADLIKVAMIKVQNALEEQNMQTKMLLTVHDELVFESPPE 852 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EI A Q++ M + +L V LKVNI+ NW E Sbjct: 853 EIFQA-QVLAEQMMEGVW---DLDVALKVNIESGKNWAE 887 Score = 250 bits (639), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 123/278 (44%), Positives = 184/278 (66%), Gaps = 5/278 (1%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++LVDGS++I+RAF+A LS GLP NAI GF NM+ KL+ + + E + A++FD Sbjct: 4 IYLVDGSAYIHRAFHAVRNLSNSK-GLPTNAIFGFTNMMLKLINDKKPE----YAAMVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E+Y DYKANRP + E L Q+P ++ T+AF +P +E+QG+EADD+I T Sbjct: 59 AKGPTFRHEMYKDYKANRPPMDEALAVQIPYIKNVTEAFNMPMLEMQGYEADDLIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AEK+GF V +++ DKD QLV+ + ++D +K+E +E + +K G+PP+K++ + AL+ Sbjct: 119 KAEKQGFMVVMVTGDKDFNQLVTNKSVVWDPMKDETRTVESITEKQGLPPDKVIEIMALS 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPG+PGIG KTA L+QE+G+LE + I +KK++EN+ Y + A LS KL Sbjct: 179 GDSSDNIPGVPGIGPKTAIALIQEFGSLEGVYEGVETITKKKQKENLQTYKDDAFLSHKL 238 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 V + TD P+ E L +++ + +L LEF L Sbjct: 239 VTIETDAPVEFDPEKLRIQEPDSQKLAKIFSELEFRDL 276 >gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771] gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771] Length = 888 Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust. Identities = 217/546 (39%), Positives = 333/546 (60%), Gaps = 36/546 (6%) Query: 439 STGKNTL-----TKEILSYLKKFFEN----EHFLKIGHNIKYDKLVLHRYGISMR--GFE 487 S G+N L + E S+ K +N K ++ K D +LH YGI + GF Sbjct: 361 SEGQNYLLPLNSSTETTSFALKLLQNICVDSKIKKCCYDTKADLWLLHYYGIEINQPGF- 419 Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ML Y+L+ G+S+ + A L +E ++ +P ++ Sbjct: 420 DVMLADYLLNPGKSARSLPETALSHLDIVLQE---GSETYLP--------------ASAE 462 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 VI +L +L+ KL++++ ++Y ++ P++ V++ ME TG+ +D++ L+ +S E++K L Sbjct: 463 VISRLVDILQSKLLLQEQENLYYDIELPLLKVLASMERTGVSVDKEQLQLMSEELNKKLQ 522 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 L +IY+ +GE FN++S KQLG ILF KLK +G KTKTG + T LE++ GD+P+ Sbjct: 523 VLTTDIYEHAGEIFNINSTKQLGSILFEKLKLKAGKKTKTG-YSTDVTVLEEL-AGDHPV 580 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 + +LE+RQL+K+KSTY D L IN +T ++HT + A T TGRL+S EPNLQN+PI+ Sbjct: 581 VSLLLEYRQLAKLKSTYVDGLTGLINPQTGKLHTTFHQAVTATGRLSSSEPNLQNVPIRL 640 Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 D G+KIR+ F+ P + SADYSQIELRILAHIA+ L F DIH A+E+F Sbjct: 641 DAGRKIRKFFVPCKPDNFIFSADYSQIELRILAHIAQDNNLMDAFAKKQDIHTRTASEVF 700 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 GV +++V+P+MR AK +NF I+YGIS F LA +++ R EA YI YF+R+ G+ YI Sbjct: 701 GVAMDEVTPEMRGRAKAVNFGIVYGISDFGLAKDIKVTRKEAGRYINNYFNRYSGVKAYI 760 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 ++ R+ GYV TI RR + ++ S +R+ ER A+N PIQGSA+DI + AM+ Sbjct: 761 DRVIREAREKGYVTTILNRRRYLPDLFSSNRVVRSFGERTAMNTPIQGSASDIIKLAMVL 820 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 +++ + KL++ M+LQ+HDEL+F+V E+ ++ + ME A + L VPL V++ Sbjct: 821 IYREMRKRKLSSTMILQVHDELIFDVVASEVEEMQNLVKYYMENA----VELSVPLVVDM 876 Query: 967 KVSNNW 972 K+ NW Sbjct: 877 KIGPNW 882 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 119/277 (42%), Positives = 169/277 (61%), Gaps = 12/277 (4%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K N + ++DG+S I+RAF+A PLLS DGLP NA+ GF NML K+L + + + + Sbjct: 10 KNNTILVIDGNSLIHRAFHAIPLLSTA-DGLPTNAVYGFTNMLLKILNDIQPKWVT---- 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFRN+ Y +YKA+R PE L PQ LV+ A I +E +G+EADD+I Sbjct: 65 VAFDKSKTTFRNQEYSEYKAHRKATPEELRPQFSLVKDVLNALSIKWLEAEGYEADDLIG 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178 T AE+E V I+S DKD++QLVS T T K E+ + E+V +K+G+ P + Sbjct: 125 TIVKKAEEEDADVVILSGDKDILQLVSDKTRAILTKKGITEIEEYNAENVYRKFGVHPNQ 184 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE-YA 237 + + LTGD DNIPG+PGIG KTA LLQ++ ++ENIL N +I + R ++E + Sbjct: 185 ITDYKGLTGDPSDNIPGVPGIGPKTATKLLQDFDSVENILANLDKITSRAR--TLMENNS 242 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS 274 E A LS++L + T+VP+ I LE I + N L + Sbjct: 243 EQALLSKRLATIITNVPVQITLEQCIRTEPNEAELFN 279 >gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B] Length = 850 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 217/511 (42%), Positives = 319/511 (62%), Gaps = 28/511 (5%) Query: 469 IKYD-KLVLHRYGI----SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523 I YD K + H+ + +++ ED+M+ SYVLDS RSS+++ ++ ++SY +I Sbjct: 361 IVYDLKNIFHQLNLEDTDNIKNCEDVMIASYVLDSTRSSYELETL---FVSYLNTDIEAV 417 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 RK + I + ++ +LW L + + +YE +++P+I V+ +M Sbjct: 418 RK--------------DKKIVSVVLLKRLWDELLRLIDLNSCKFLYENIERPLIPVLYEM 463 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E TG ++D+D L Q + EI +L LE IY ++GE FN++SPKQL ILF KLK P Sbjct: 464 EKTGFKVDRDALLQYTKEIESKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIK 523 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KTKTG + T A+ LE++ + I+ IL++R +KI +TY L IN + RVHT + Sbjct: 524 KTKTG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTF 581 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 T TGRLAS +PNLQNIP+K D G+ IR+ F+ LI ADYSQIELRILAHI++ Sbjct: 582 IQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISE 641 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L F+N++DIH AAE+FGV+I V+P+MR AK +NF I+YGIS + LA ++I Sbjct: 642 DERLISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIVYGISDYGLARDVKI 701 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 R EAA++I +YF R+P + EY++ T F R NG+V T+F R+ + +I S ++R Sbjct: 702 SRKEAAEFINKYFERYPKVKEYLDNTVKFARDNGFVLTLFNRKRYVKDIKSTNRNLRGYA 761 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE +I Sbjct: 762 ERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKRI 821 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME A + L+VPL V +K NW E Sbjct: 822 VKREMENA----VALKVPLVVEVKEGLNWYE 848 Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 132/433 (30%), Positives = 220/433 (50%), Gaps = 38/433 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L + DG+S +YRAF+A P L+ ++ +P NAI GF N++ K L+ + + + AV FD Sbjct: 3 LVIFDGNSILYRAFFALPELTTSNN-IPTNAIYGFVNVILKYLEQEKPD----YVAVAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 R Y +YKANR +P+ L Q+P VR AF IP +E +G+EADD+I + Sbjct: 58 KRGREARKSEYQEYKANRKPMPDNLQVQIPYVREILYAFNIPIVEFEGYEADDVIGSLVN 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180 + G + II+ D+D +QL+ + +D E+ IE++ +K+G+ ++ Sbjct: 118 QFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDRTMEDLYTIENIKEKYGVWANQVP 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DNIPG+ GIG K+A LL+EY +LE I N +IK RE + + A Sbjct: 178 DYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIK-GSIREKLEAGKDMA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS++L + D+P+ + LE L ++ N RL L LEF +I R+ + + E Sbjct: 237 FLSKRLATIVCDLPLNVKLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLS---EVVQFE 293 Query: 301 PVV--LDINTTENKGIAIETEIDRDTTIKTSQFSSL--SDQTSKINSEQTPQKLFLERLQ 356 V DI E K E++ + I+T + + D+ +Q +F+ R Sbjct: 294 FVQQRTDIPDVEQK------ELESISQIRTKEIPLMFVPDEQCFYLYDQESNTVFVTRDG 347 Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ 416 L + + +D+ + + K+I + + DT + + + + IA LD Sbjct: 348 HLVEEILKSDTVKIVYDLKNIFHQLN------------LEDTDNIKNCEDVMIASYVLDS 395 Query: 417 KDDTSFKVETIFI 429 +S+++ET+F+ Sbjct: 396 T-RSSYELETLFV 407 >gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] Length = 872 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 229/611 (37%), Positives = 360/611 (58%), Gaps = 41/611 (6%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 + I + +I + + L+ + S FK + + K + +++ D+ + ++T Sbjct: 299 GFEVITDLTEIDRVLSMLDEVESFGFKFNFASTKLYQQKVEGLTVAS----DEEACYIDT 354 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 +DL+ E++ L+ +FE+ K+ N K + + L G+ ++G Sbjct: 355 SDLDLA---------------ELIDKLQPYFEDYELNKLSLNTKENLIYLKEQGVEVKGI 399 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545 D +L Y+L D+ SI L + E+ K+ + E ++ Sbjct: 400 SFDPLLADYLLRPSAKEQDLESILTDQL---QMELEKTESEA------------ETEVQQ 444 Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 ++ +L L KL + L+ ++ ++ P+I +++QME+ GI +DQD+++++S ++ + Sbjct: 445 VRILFKLQDKLTDKLADKGLMELFIDVELPLIPILAQMELNGIAVDQDMIQELSNKLEEK 504 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 L SL Y+L+GE+FNL+SPKQLG+ILF KL P +TKTG + T+A LE++ + Sbjct: 505 LDSLRSRAYELAGEEFNLNSPKQLGEILFEKLGLPVIKRTKTG-YSTSASVLEKLE-DKH 562 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 I+ ILE+R+ K+KSTY D LP+ IN +T+R+HT ++ T TGRL+S EPNLQNIPI Sbjct: 563 EIVPLILEYRKYQKLKSTYVDPLPDLINPKTERIHTSFNQLVTATGRLSSTEPNLQNIPI 622 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 +T+ G++IR+ F++ K+L++ DYSQIELR+LAHI++ L + DIH AAE+ Sbjct: 623 RTEEGRRIRKVFVAEERKELLAVDYSQIELRVLAHISQDENLIAAYREGQDIHTKTAAEV 682 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 FG+ +VS Q RR AK INF I YGISP+ LA + + + EA DYI +Y +R+P + EY Sbjct: 683 FGLEASEVSYQQRRRAKAINFGIAYGISPWGLAKDINVSKQEAEDYINQYLNRYPKVKEY 742 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 ++ ++ GYV TI RR + EINS R+ ER AIN PIQGSAADI + AM+ Sbjct: 743 MDHQIKQAKEEGYVTTILNRRRYLPEINSSNYHRRSFGERMAINTPIQGSAADIMKLAML 802 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 + L++ +L TK+LLQ+HDEL+FEVP EE+ Q+I ME I L VPLKV+ Sbjct: 803 ESARVLDERELDTKILLQVHDELIFEVPPEELEEVQQVIKAEMEDV----IELDVPLKVD 858 Query: 966 IKVSNNWQEEN 976 +KV +NW++ N Sbjct: 859 LKVGSNWRDMN 869 Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/326 (38%), Positives = 190/326 (58%), Gaps = 19/326 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M+ + LFL+DGSS ++RAFYA P + DG N + GF ML +L++ +S+A Sbjct: 1 MEDKKELFLLDGSSLLHRAFYALPESLQTSDGEYTNGVFGFTKMLLRLIEEEDPDSLA-- 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E Y +YKANR + P+ L PQ L++ +AF IP +E++G+EADDI Sbjct: 59 --VAFDLAGPTFRHEEYEEYKANRKETPDKLKPQFGLMKEVLEAFRIPVVELEGYEADDI 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T AE+EG+ VTI++ D+D +QLV+ T + T + D+E V +++ + P Sbjct: 117 IGTLARQAEEEGYQVTIVTGDRDALQLVTEQTKIRYTKRGITNIVDYDLEKVEEEYELEP 176 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 K++ + L GD DNIPG+ GIG KT+ LL ++G+LE +L N ++ KKR++ + E Sbjct: 177 RKLIDKKGLMGDKSDNIPGVDGIGKKTSTKLLHQFGSLEEVLDNIDQVSGKKRKQTLKEQ 236 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A+ AR+S+KL ++ DVPI L+ LE+ + +LI+ L LEF L+ + Sbjct: 237 ADRARMSKKLATIKLDVPIECDLDEFKLEEPDQEKLINILSRLEFNSLLKEFGGHETLNL 296 Query: 297 ANIEPVVLDINTTENKGIAIETEIDR 322 V+ D+ TEIDR Sbjct: 297 TGGFEVITDL-----------TEIDR 311 >gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] Length = 892 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 221/619 (35%), Positives = 352/619 (56%), Gaps = 18/619 (2%) Query: 360 QYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDD 419 Q ++ YT ++ ++++ +LE +F T +D ++ + I+++ L+ + Sbjct: 286 QTDLSGKRYTGVMTQQELESLAGRLEKASCFAFDTETTALDPMKARLVGISLA-LEPDEA 344 Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 V + V +D+ +L L FEN KIG N+KYD VL R Sbjct: 345 FYIPVGHAYEGAPVQLDRDA---------VLRILAPAFENTKITKIGQNVKYDWTVLSRC 395 Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD 535 G + G D M+ +Y+L+ R S+ + +A +L++ + +++ + K++ + Sbjct: 396 GFKIDGPVFDTMIAAYLLNPTRRSYGLDRLAADYLNHRMISYQDVTGTGKNAKCFSAVPL 455 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + +A E++++ L LL +L L + E ++ P++ V+ ME+ G+ +D++ L Sbjct: 456 EEAIPYAAEDADITFSLHRLLEKELKQGGLFELLETIEMPLVPVLMHMEMAGVAVDREAL 515 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 +S E+ L LE IY L+GE FN++SP+QLG ILF KL P+ KTK +T Sbjct: 516 AALSKELEGQLEKLEGEIYGLAGETFNINSPQQLGVILFEKLGLPTQKKTKKKTGYSTDA 575 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 D+ + + +L R L+K+KSTYAD+L I T R+HT ++ +T TGRL+S Sbjct: 576 DVLTTLADHHELPALLLRHRTLAKLKSTYADALAELILPETGRIHTSFNQTATATGRLSS 635 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIPI+T+ G++IR+AF+ P +SADYSQ+ELRILAH ++ L + FEN Sbjct: 636 TDPNLQNIPIRTEEGRQIRKAFVPRPGWTFVSADYSQVELRILAHYSQDPILIEAFENDE 695 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+E+F + E ++ +RR AK INF I+YGISPF LA L I + A +Y+ Y Sbjct: 696 DIHTRTASEVFQLFPEMITEDVRRQAKAINFGIVYGISPFGLARDLGISQKMAKNYMDSY 755 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+ + E+++K R+ G T+FGR + +I+SP +++ ERAAIN PIQG+ Sbjct: 756 FSRYSRVKEFMDKAIADARETGQTRTMFGRIRYLPDIDSPNRTLQGYAERAAINTPIQGT 815 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AMI+ K+L KL + MLL +HDE+V E P +E+ T S ++ ME C Sbjct: 816 AADIMKLAMIATEKALAKEKLVSVMLLSVHDEIVLECPPDEVKTVSALVADIMENVC--- 872 Query: 956 INLRVPLKVNIKVSNNWQE 974 +L V LKVN+ +NW + Sbjct: 873 -DLAVRLKVNVAQGSNWAD 890 Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 116/278 (41%), Positives = 171/278 (61%), Gaps = 5/278 (1%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++L+DG+++I+R ++A LS GLP NA F ML KL+ KE + + V FD Sbjct: 7 IYLIDGTAYIHRGYHAVRNLSNSK-GLPTNAAFSFTRMLMKLM----KEKESEYAVVFFD 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EI +YKANRP + E + Q+P +R + F +P +E QG+EADD+I T Sbjct: 62 AKGPTFRHEIDREYKANRPPMAEDMAVQIPYIRKIVEGFNLPIVEQQGYEADDMIGTLAV 121 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AEKEGF I+S DKD Q+V+ ++D +KE ID V KK+GI P +++ AL+ Sbjct: 122 KAEKEGFDTVIVSGDKDFAQMVTDHVTIWDPMKEIVIDRAAVEKKFGIQPAQVIDAMALS 181 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNI G+PGIG KTA L+QE+G+L+N+ I +KK++EN+L + + A L+RKL Sbjct: 182 GDTSDNIKGVPGIGEKTALALIQEFGSLDNLYDRVETITKKKQKENLLAHRDDAYLARKL 241 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 V + T+ P+ LE ++ + L + LEFT L Sbjct: 242 VTIDTNAPVAWDLEAFTVKAPDNAALSALFGELEFTGL 279 >gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1] gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1] Length = 875 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 214/528 (40%), Positives = 326/528 (61%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 KK+ +E K ++ K + L R G+ + G E D++++SY+L+ S+ D A +A+K Sbjct: 356 FKKWAADEKMKKSVYDAKRSIVALRRQGVELTGVEFDLLIVSYILNPAESADDFAGVAKK 415 Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + K K +P + ++ EH +NV+ +L L Sbjct: 416 HGASVIESDEAVYGKGAKRKVP----EEEKLAEHLARKANVVYELKSTCEEALKENDQYQ 471 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ +++ ME TG+ +D D LK++ +E+++ L +E+ IY+L+GE+FN++SPK Sbjct: 472 LFTDLELPLAIILADMEYTGVGVDVDRLKEMKSELAERLDEMEKKIYELAGEEFNINSPK 531 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL+ P KTKTG + T+A LE++ + II +IL +RQL K++STY + Sbjct: 532 QLGVILFEKLELPVIKKTKTG-YSTSADVLEKLQS-KHEIIDHILHYRQLGKLQSTYIEG 589 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L I++ + +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AFI P++K Sbjct: 590 LLKVIHEDSNKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFI--PSEKNWL 647 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIA L F +DIH A ++F V+ + V+ MRRHAK + Sbjct: 648 MFAADYSQIELRVLAHIAGDEKLIHAFNEGMDIHTKTAMDVFHVDADSVTSNMRRHAKAV 707 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS F L+ L I R EA ++I+RY +PG+ EY++ + +QNG+V+T+ Sbjct: 708 NFGIVYGISDFGLSQSLGITRKEAGEFIQRYLDSYPGVQEYMDDIISEAKQNGFVKTLLQ 767 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQGSAADI ++AMI + LE L T++LLQ+ Sbjct: 768 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMAARLEKENLQTRLLLQV 827 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE PE+EI +I+ ME A + L VPLKV+ W Sbjct: 828 HDELIFEAPEDEIERLKEIVPEVMENA----VELEVPLKVDYSYGPTW 871 Score = 217 bits (553), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 114/293 (38%), Positives = 174/293 (59%), Gaps = 9/293 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S YRAF+A PLL+ G+ NA+ GF ML K++ + +H V FD Sbjct: 5 LVLIDGNSIAYRAFFALPLLNNDK-GVHTNAVYGFTTMLQKIMTDEE----PTHILVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ + +YK R K P L Q P +R A+ IP E++ +EADDII T + Sbjct: 60 AGKTTFRHKTFGEYKGGRQKTPPELSEQFPYIRELLDAYQIPRYELENYEADDIIGTLSL 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AEK+G+ V IIS DKDL QL S TT + T K E EH+++KW I P++++ + Sbjct: 120 QAEKDGYEVKIISGDKDLTQLSSETTTVGITRKGITDIEVYTPEHIMEKWEITPDRIIDM 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GDS DNIPG+PG+G KTA LL+++G +E +L + + KK +E + E+ + A + Sbjct: 180 KGLMGDSSDNIPGVPGVGEKTAIKLLKQFGTIEKLLESIDEVSGKKLKEKLEEHKDQAVM 239 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 S++L + + PI + +E L E + +L +F K L F+ L+ ++ T + D Sbjct: 240 SKELATILREAPIEVTVEELNYEGSDDKKLKAFFKELGFSSLLEKMGETVEED 292 >gi|217964288|ref|YP_002349966.1| DNA polymerase type I [Listeria monocytogenes HCC23] gi|217333558|gb|ACK39352.1| DNA polymerase type I [Listeria monocytogenes HCC23] Length = 875 Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust. Identities = 236/589 (40%), Positives = 344/589 (58%), Gaps = 24/589 (4%) Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450 SF+I+T+ + A+ + + TS FI L+VH+SQ + T E Sbjct: 300 SFEIVTELKEKHFGGKTALYVELENDNYHTSN-----FIGLTVHSSQGTYFFTKETAENS 354 Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 +++ E+E K+ ++ K + ++R G+++ G DIML SY+L+ S D S+A Sbjct: 355 EAFREWVESEQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVA 413 Query: 510 QKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 + YT E K K S P + I S + A+ I L L L + Sbjct: 414 VRH-DYTEVETDEAVYGKGAKRSTPEESIVASHLARKAV----AIADLEKRLVADLEENE 468 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L + E L+ P+ V+++ME+ G+ +D + L+ + E++ L +LEE+I+ L+GE FN++ Sbjct: 469 QLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEAFNIN 528 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG ILF KL P+ KTKTG + T A LE + G + II IL +RQL KI+STY Sbjct: 529 SPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTY 586 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743 + L +K T +VHT ++ T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P Sbjct: 587 IEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGW 646 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 K+ SADYSQ+ELR+LAHI++ L F++ DIH A ++F V ++V MRR AK Sbjct: 647 KMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKA 706 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R EA D+I RYF +P + EY++ F ++ GYVETI Sbjct: 707 VNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETIL 766 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + EI S ++R ER A+N PIQGSAADI ++AMI + + L KL K+LLQ Sbjct: 767 HRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQ 826 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE PE EI +I+ ME A + L VPLKV+ + W Sbjct: 827 VHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 871 Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 119/309 (38%), Positives = 169/309 (54%), Gaps = 10/309 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S RAFYA PLL+ G+ NA+ GF ML +L+ + SH V Sbjct: 2 NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + YK R K P L Q P +R A+ IP E+ +EADDII T Sbjct: 57 FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 T AE +G V II+ D+DL QL S T +Y T K E E + +K+ + PE+++ Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239 ++ L GDS DNIPGIPG+G KTA LL E+G +E++L +A I KK +E +LE E Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS++L + D PI +E + ++I LK + FT L+ + +A + Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTPEEAKEL 296 Query: 300 EPVVLDINT 308 + + +I T Sbjct: 297 KELSFEIVT 305 >gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 885 Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust. Identities = 237/619 (38%), Positives = 363/619 (58%), Gaps = 39/619 (6%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 I+ D++ + V KD+++ + L+ S +FK ITD KPI +A+ Sbjct: 297 ISQDNF-EFVEIKDLKEIEKDLKDKKSLAFKFITDGKIYEDVKPIYLAVKV--------- 346 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEI-LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 +DS K +EI +LKK E+E K+G+++K D ++L GI Sbjct: 347 --------------KDSEVKFISYEEIDFDFLKKIMEDEKVEKLGYSLKEDIIILMDLGI 392 Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEIL--KSRKSSIPIDKISDS 536 ++ + D+ + Y+L+S +S +DI I+ + Y E L K K D D Sbjct: 393 DIKNYSHDVEIAEYLLNSTQSDYDINKISMAYFKNGYLDLEDLLGKGAKKKTYADLDKDD 452 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 + A N I +L L + K+ E++ +Y+ ++ P+++V++ ME GI D+ +L Sbjct: 453 LFKYFAF-VLNTIYRLEDLQKEKIDEEEMTSLYQDMELPLVEVLASMEYVGINTDEAVLD 511 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 ++ +I + L +LEE IYD +GEKFN++SPKQLG ILF K+ FP KTKTG + T+A Sbjct: 512 EIDKQIIEKLKTLEEEIYDEAGEKFNINSPKQLGVILFDKMDFPVIKKTKTG-YSTSADV 570 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE++ G II IL++R+ SK+KSTY D L INK+T+R+H+ + T TGR++S Sbjct: 571 LEKLR-GKGEIIDKILDYRKFSKLKSTYIDGLKAVINKKTKRIHSRFMQTVTATGRISST 629 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIPIKT+ G+ IR+AF++ L+ ADYSQIELR+LA ++ + F++ LD Sbjct: 630 DPNLQNIPIKTEEGRLIRKAFLASEGGVLVDADYSQIELRVLAALSDDKEMLDAFKHGLD 689 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IHR A+E+F V+ ++V + R AK +NF I+YGIS + L+ L IPR A +YI Y Sbjct: 690 IHRKTASEVFHVDYDEVDDRQRYEAKAVNFGIVYGISDYGLSQNLNIPRKAAKEYIDNYL 749 Query: 837 HRFPGIHEYI-EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F GI +Y+ E+ KN + GYVETIF RR + E+N+ +IR+ ER A+N PIQGS Sbjct: 750 GHFVGIKDYMAEEIKN-GKDKGYVETIFKRRRYIPELNAKNFNIRSFGERIALNTPIQGS 808 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V+ L+ L +K+++QIHDELV + E+EI +++ ME + Sbjct: 809 AADIIKIAMVKVYNELKKRNLKSKLIIQIHDELVVDTAEDEIEEVKELMKDLMENS---- 864 Query: 956 INLRVPLKVNIKVSNNWQE 974 ++L V L V++ N E Sbjct: 865 VDLNVKLSVDMNTGANLYE 883 Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 108/289 (37%), Positives = 160/289 (55%), Gaps = 9/289 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N ++DGSS +RAFYA PLL K GL NAI GF M+ +N+ ++ +H AV Sbjct: 2 DNKFLIIDGSSLFFRAFYALPLLKTKR-GLYTNAIYGFVMMV----ENAIEKVKPTHLAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+EIY DYK R K P L Q PLVR + +E +EADDI T Sbjct: 57 CFDMKGKTFRSEIYKDYKGTRQKTPNELEQQWPLVREILGHMNVKILESPVYEADDIAGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 + + +EGF +++ DKD QLV+ T + T K + + +E + + +GI P + Sbjct: 117 LSKLGTEEGFENYLLTGDKDYFQLVNEKTKVLFTRKGITDMDIMTVEKIKEDYGIEPLEF 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GDS DNIPGI GIG KT L+ E+ +EN+ N + KK +E ++E + Sbjct: 177 IELKALMGDSSDNIPGIYGIGEKTGLKLIHEFHTIENLYDNIDDVSGKKLKEKLIEGKMS 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 A +S+KL + DVP+ L+ D + +L + EF +++R+ Sbjct: 237 AFMSKKLGTIVKDVPLEESLDDFKKVDYDYEKLSELYREFEFNSMLDRL 285 >gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725] gi|226693519|sp|Q59156|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725] Length = 850 Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust. Identities = 216/511 (42%), Positives = 319/511 (62%), Gaps = 28/511 (5%) Query: 469 IKYD-KLVLHRYGI----SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523 I YD K + H+ + +++ ED+M+ SYVLDS RSS+++ ++ ++SY +I Sbjct: 361 IMYDLKNIFHQLNLEDTNNIKNCEDVMIASYVLDSTRSSYELETL---FVSYLNTDIEAV 417 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 +K + I + ++ +LW L + + +YE +++P+I V+ +M Sbjct: 418 KK--------------DKKIVSVVLLKRLWDELLRLIDLNSCQFLYENIERPLIPVLYEM 463 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E TG ++D+D L Q + EI +L LE IY ++GE FN++SPKQL ILF KLK P Sbjct: 464 EKTGFKVDRDALIQYTKEIENKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIK 523 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KTKTG + T A+ LE++ + I+ IL++R +KI +TY L IN + RVHT + Sbjct: 524 KTKTG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTF 581 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 T TGRLAS +PNLQNIP+K D G+ IR+ F+ LI ADYSQIELRILAHI++ Sbjct: 582 IQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISE 641 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L F+N++DIH AAE+FGV+I V+P+MR AK +NF I+YGIS + LA ++I Sbjct: 642 DERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKI 701 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 R EAA++I +YF R+P + EY++ T F R NG+V T+F R+ + +I S ++R Sbjct: 702 SRKEAAEFINKYFERYPKVKEYLDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYA 761 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE +I Sbjct: 762 ERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEI 821 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME A + L+VPL V +K NW E Sbjct: 822 VKREMENA----VALKVPLVVEVKEGLNWYE 848 Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 163/291 (56%), Gaps = 12/291 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L + DG+S +YRAF+A P L+ ++ +P NAI GF N++ K L+ + + + AV FD Sbjct: 3 LVIFDGNSILYRAFFALPELTTSNN-IPTNAIYGFVNVILKYLEQEKPD----YVAVAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 R Y +YKANR +P+ L Q+P VR AF IP IE +G+EADD+I + Sbjct: 58 KRGREARKSEYEEYKANRKPMPDNLQVQIPYVREILYAFNIPIIEFEGYEADDVIGSLVN 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180 + G + II+ D+D +QL+ + +D E+ +E+V +K+G+ ++ Sbjct: 118 QFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDKTVEDLYTVENVKEKYGVWANQVP 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DNIPG+ GIG K+A LL+EY +LE I N +IK RE + + A Sbjct: 178 DYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKS-SIREKLEAGKDMA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 LS++L + D+P+ + LE L ++ N RL L LEF +I R+ + Sbjct: 237 FLSKRLATIVCDLPLNVKLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLS 287 >gi|307571146|emb|CAR84325.1| DNA polymerase I [Listeria monocytogenes L99] Length = 885 Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust. Identities = 236/589 (40%), Positives = 344/589 (58%), Gaps = 24/589 (4%) Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450 SF+I+T+ + A+ + + TS FI L+VH+SQ + T E Sbjct: 310 SFEIVTELKEKHFGGKTALYVELENDNYHTSN-----FIGLTVHSSQGTYFFTKETAENS 364 Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 +++ E+E K+ ++ K + ++R G+++ G DIML SY+L+ S D S+A Sbjct: 365 EAFREWVESEQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVA 423 Query: 510 QKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 + YT E K K S P + I S + A+ I L L L + Sbjct: 424 VRH-DYTEVETDEAVYGKGAKRSTPEESIVASHLARKAV----AIADLEKRLVADLEENE 478 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L + E L+ P+ V+++ME+ G+ +D + L+ + E++ L +LEE+I+ L+GE FN++ Sbjct: 479 QLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEAFNIN 538 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG ILF KL P+ KTKTG + T A LE + G + II IL +RQL KI+STY Sbjct: 539 SPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTY 596 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743 + L +K T +VHT ++ T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P Sbjct: 597 IEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGW 656 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 K+ SADYSQ+ELR+LAHI++ L F++ DIH A ++F V ++V MRR AK Sbjct: 657 KMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKA 716 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R EA D+I RYF +P + EY++ F ++ GYVETI Sbjct: 717 VNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETIL 776 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + EI S ++R ER A+N PIQGSAADI ++AMI + + L KL K+LLQ Sbjct: 777 HRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQ 836 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE PE EI +I+ ME A + L VPLKV+ + W Sbjct: 837 VHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 881 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 119/309 (38%), Positives = 169/309 (54%), Gaps = 10/309 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S RAFYA PLL+ G+ NA+ GF ML +L+ + SH V Sbjct: 12 NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 66 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + YK R K P L Q P +R A+ IP E+ +EADDII T Sbjct: 67 FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 126 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 T AE +G V II+ D+DL QL S T +Y T K E E + +K+ + PE+++ Sbjct: 127 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 186 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239 ++ L GDS DNIPGIPG+G KTA LL E+G +E++L +A I KK +E +LE E Sbjct: 187 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 246 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS++L + D PI +E + ++I LK + FT L+ + +A + Sbjct: 247 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTPEEAKEL 306 Query: 300 EPVVLDINT 308 + + +I T Sbjct: 307 KELSFEIVT 315 >gi|312875885|ref|ZP_07735875.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A] gi|311797366|gb|EFR13705.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A] Length = 850 Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust. Identities = 216/511 (42%), Positives = 318/511 (62%), Gaps = 28/511 (5%) Query: 469 IKYD-KLVLHRYGI----SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523 I YD K + H+ + +++ ED+M+ SYVLDS R S+++ ++ ++SY +I Sbjct: 361 IVYDLKNIFHQLNLKDTDNIKNCEDVMIASYVLDSTRGSYELETL---FVSYLNTDIEAV 417 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 RK + I + ++ +LW L + + +YE +++P+I V+ +M Sbjct: 418 RK--------------DKKIVSVVLLKRLWDELLRLIDLNSCKFLYENIERPLIPVLYEM 463 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E TG ++D+D L Q + EI +L LE IY ++GE FN++SPKQL ILF KLK P Sbjct: 464 EKTGFKVDRDALLQYTKEIESKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIK 523 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KTKTG + T A+ LE++ + I+ IL++R +KI +TY L IN + RVHT + Sbjct: 524 KTKTG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTF 581 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 T TGRLAS +PNLQNIP+K D G+ IR+ F+ LI ADYSQIELRILAHI++ Sbjct: 582 IQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISE 641 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L F+N++DIH AAE+FGV+I V+P+MR AK +NF I+YGIS + LA ++I Sbjct: 642 DERLISAFKNNVDIHSQTAAEVFGVDIANVTPEMRSQAKAVNFGIVYGISDYGLARDVKI 701 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 R EAA++I +YF R+P + EY++ T F R NG+V T+F R+ + +I S ++R Sbjct: 702 SRKEAAEFINKYFERYPKVKEYLDNTVKFARDNGFVLTLFNRKRYVKDIKSTNRNLRGYA 761 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE +I Sbjct: 762 ERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKRI 821 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME A + L+VPL V +K NW E Sbjct: 822 VKREMENA----VALKVPLVVEVKEGLNWYE 848 Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 105/291 (36%), Positives = 163/291 (56%), Gaps = 12/291 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L + DG+S +YRAF+A P L+ ++ +P NAI GF N++ K L+ + + + AV FD Sbjct: 3 LVIFDGNSILYRAFFALPELTTSNN-IPTNAIYGFVNVILKYLEQEKPD----YVAVAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 R Y +YKANR +P+ L Q+P VR AF IP +E +G+EADD+I + Sbjct: 58 KRGREARKSEYQEYKANRKPMPDNLQVQIPYVREILYAFNIPIVEFEGYEADDVIGSLVN 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180 + G + II+ D+D +QL+ + +D E+ IE++ +K+G+ ++ Sbjct: 118 QFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDRTMEDLYTIENIKEKYGVWANQVP 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DNIPG+ GIG K+A LL+EY +LE I N +IK RE + + A Sbjct: 178 DYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIK-GSIREKLEAGKDMA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 LS++L + D+P+ + LE L ++ N RL L LEF +I R+ + Sbjct: 237 FLSKRLATIVCDLPLNVKLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLS 287 >gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] Length = 1041 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 232/672 (34%), Positives = 374/672 (55%), Gaps = 17/672 (2%) Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS 367 TE + + E +D ++ S F + + + P +E + + + + Sbjct: 373 ATEPRALPETQEEQQDGPMQLSLFDTPEPRAEVARKLRLPGPALVETSLFFEESNVQSPT 432 Query: 368 YTKIVNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 T I+N+++ + V+ L G +F T + D + + ++ + E Sbjct: 433 STMIINSEEGLDVLVKSLRDAGHFAFDTETTSEDQRKADLVGLSFAMAPG--------EA 484 Query: 427 IFIDLSVHTSQDST--GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 +I + T+ D G +L LK FE+ K HN KYD V+ RYGI + Sbjct: 485 YYIPVGHTTTVDGQEPGTQLPLSHVLVQLKPIFEDASIGKYMHNAKYDIAVMLRYGIQVE 544 Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQE 540 G D ML +Y+++ GR + A + LS E++ S I + ++ + + Sbjct: 545 GLSFDSMLAAYLIEPGRRGLGLKEQAFQRLSILMTPITELIGSGSKIISMAQVPIRRAAD 604 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 +A ++++ L+L + L L LL ++ RL+ P+I V+ QME+ G+ +D + L + Sbjct: 605 YAGSDADMTLRLVVPLHKDLQKHNLLDLFYRLEMPLIKVLMQMELYGVALDAEFLHEFGE 664 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 ++++ L E+ IYD G FN++SPKQLG++LF +LK P+G KTKTG + +A +E + Sbjct: 665 QLNEQLRKAEQTIYDAVGHHFNVNSPKQLGEVLFVELKLPAGKKTKTG-YSVSADVIENL 723 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 G +P I ++LE+RQLSK+KSTY D L ++++T RV+T ++ +GRL+S PNL Sbjct: 724 R-GMHPAIDSLLEYRQLSKLKSTYIDGLQTLMDRQTGRVYTSFNQTIASSGRLSSSNPNL 782 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIP++T+LG++IRRAFI+ P+ L++ADYSQIELRILA+I L + F DIH + Sbjct: 783 QNIPVRTELGRQIRRAFIADPSYVLLTADYSQIELRILANITNEPRLVEAFNQGEDIHTI 842 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 AA +F V +E+V+ RR AKT+ ++++YG S + L+ + +AAD+IKRY FP Sbjct: 843 TAASLFSVPVEEVTRDQRRLAKTVVYAVLYGQSAYGLSQVTGMRPGDAADFIKRYHETFP 902 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 I Y+E T R+ GYV T FGR+ ++ R ER A+N PIQGS AD+ Sbjct: 903 NIKVYVESTLEQARRQGYVNTCFGRKRFIPDMRVLSHVERQALEREAVNMPIQGSNADLI 962 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 + AM+ + + + + T+M+LQ+HDELVFEVP EE+ A +I+ ME + +V Sbjct: 963 KVAMLRLQHAFLQNGMKTRMILQVHDELVFEVPVEELERAKRIVKAVMEGIGALLVPQKV 1022 Query: 961 PLKVNIKVSNNW 972 P+KV++K NW Sbjct: 1023 PIKVDMKSGKNW 1034 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 113/294 (38%), Positives = 162/294 (55%), Gaps = 17/294 (5%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K L L+DG + I+RAF+A P G PVNA GF +ML K L R + IA Sbjct: 6 KRKKLVLIDGHAIIHRAFHAVPEDLSTSSGEPVNATFGFTSMLMKALLEERPDYIA---- 61 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD P TFR+E Y YKA+RP +P+ + PQ +R QAFGI E G+EADD++ Sbjct: 62 VTFDRPTPTFRHEQYAPYKAHRPTLPDNMRPQFSRIREVVQAFGIEIYEKDGYEADDVLG 121 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK--------KWGI 174 T + A+ +G I + D D +QLV+ VK K I V++ ++G Sbjct: 122 TLSVQAKAQGVDTIIYTGDMDTLQLVNEQVL----VKVAKRGISEVVEYDEKEVQARYGF 177 Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 P +++ + L GD DNIPG+ GIG KTA L+ EYGNLENIL +AS +K K+++ + Sbjct: 178 APHQLIDYKGLVGDKSDNIPGVAGIGAKTATRLIVEYGNLENILAHASELKPKEQK-LLQ 236 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E E R S+ L + D P+++ LE + + R+++ + LEF + RV Sbjct: 237 EGEEQGRQSKFLATIVLDAPVSLDLEACRMTHVDSERILTLFRQLEFRNQVERV 290 >gi|290893966|ref|ZP_06556942.1| DNA polymerase I [Listeria monocytogenes FSL J2-071] gi|290556504|gb|EFD90042.1| DNA polymerase I [Listeria monocytogenes FSL J2-071] Length = 875 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 235/589 (39%), Positives = 345/589 (58%), Gaps = 24/589 (4%) Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450 SF+I+T+ + A+ + + T+ FI L+VH+SQ + T E Sbjct: 300 SFEIVTELKEKHFGGKTALYVELENDNYHTAN-----FIGLTVHSSQGTYFFTKETAENS 354 Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 +++ E+E K+ ++ K + ++R G+++ G DIML SY+L+ S D S+A Sbjct: 355 EAFREWVESEQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVA 413 Query: 510 QKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 + YT E K K S P + I S + A+ I L L L + Sbjct: 414 VRH-DYTEVETDEAVYGKGAKRSTPEESIVASHLARKAV----AIADLEKRLVADLEENE 468 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L + E L+ P+ V+++ME+ G+ +D + L+ + E++ L +LEE+I+ L+GE+FN++ Sbjct: 469 QLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEFNIN 528 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG ILF KL P+ KTKTG + T A LE + G + II IL +RQL KI+STY Sbjct: 529 SPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTY 586 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743 + L +K T +VHT ++ T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P Sbjct: 587 IEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGW 646 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 K+ SADYSQ+ELR+LAHI++ L F++ DIH A ++F V ++V MRR AK Sbjct: 647 KMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKA 706 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R EA D+I RYF +P + EY++ F ++ GYVETI Sbjct: 707 VNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETIL 766 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + EI S ++R ER A+N PIQGSAADI ++AMI + + L KL K+LLQ Sbjct: 767 HRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQ 826 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE PE EI +I+ ME A + L VPLKV+ + W Sbjct: 827 VHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 871 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 119/309 (38%), Positives = 169/309 (54%), Gaps = 10/309 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S RAFYA PLL+ G+ NA+ GF ML +L+ + SH V Sbjct: 2 NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + YK R K P L Q P +R A+ IP E+ +EADDII T Sbjct: 57 FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 T AE +G V II+ D+DL QL S T +Y T K E E + +K+ + PE+++ Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239 ++ L GDS DNIPGIPG+G KTA LL E+G +E++L +A I KK +E +LE E Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS++L + D PI +E + ++I LK + FT L+ + +A + Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTPEEAKEL 296 Query: 300 EPVVLDINT 308 + + +I T Sbjct: 297 KELSFEIVT 305 >gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 849 Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust. Identities = 215/527 (40%), Positives = 328/527 (62%), Gaps = 32/527 (6%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGIS----MRGFEDIMLMSYVLDSGRSSHDIASI 508 ++K +++ K+ +++K +LHR ++ D+ML SYVLDS RSS+D+ ++ Sbjct: 348 VEKLLKDQGIQKVVYDLKN---ILHRVDFGDTYQLKNCNDVMLASYVLDSTRSSYDLETL 404 Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ-LWLLLRPKLIVEKLLH 567 ++SY +I + ++E+ + ++L+ LW L + + + Sbjct: 405 ---FISYLNTDI---------------AIIKENRWAGATILLRNLWDELSKLIDLNSCQY 446 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 VYE ++ P++ ++ +ME G +++++ L++ + EI LL LE IY ++GE FN++SPK Sbjct: 447 VYENIEIPLVPILYEMEKIGFKVNKNTLQEYTKEIESKLLKLETQIYQIAGEWFNINSPK 506 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QL +LF KLK P KTKTG + T A+ LE++ + I+ IL++R +KI +TY Sbjct: 507 QLSYVLFEKLKLPVVKKTKTG-YSTDAEVLEEL-YDKHEIVPLILDYRMYTKILTTYCQG 564 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747 L IN T RVH+ + T TGRLAS E NLQNIP+K D G+ IR+AFI LI Sbjct: 565 LMQAINSVTGRVHSNFIQTGTATGRLASAESNLQNIPVKYDEGRLIRKAFIPEEGYVLID 624 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIELRILAHI++ L F+N+LDIH AAEIFGV++ +V+P MR AK +NF Sbjct: 625 ADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDVSQVTPTMRSQAKAVNFG 684 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 IIYGIS + L+ ++I R EAA++I RYF ++P + EY++ F R+NG+V T+F R+ Sbjct: 685 IIYGISDYGLSKDIKISRKEAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTLFNRKR 744 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + +I S ++RN ER A+N+PIQGSAADI + AMI V++ L++ L ++++LQ+HDE Sbjct: 745 YIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRVYRRLKEENLKSRIILQVHDE 804 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+ E P EE +I+ ME A ++L+VPL V +K NW E Sbjct: 805 LLIESPYEEKEIVKEIVKTEMENA----VSLKVPLVVEVKEGLNWYE 847 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 111/289 (38%), Positives = 159/289 (55%), Gaps = 12/289 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L + DG+S +YRAF+A P L+ + +P NAI GF N+L K L + R + + AV FD Sbjct: 3 LVIFDGNSILYRAFFALPELTTSSN-IPTNAIYGFLNVLLKYLDSERPD----YVAVAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 R Y +YKANR +P+ L Q+P VR A IP +E +G+EADD+I T Sbjct: 58 KRGRAARKSEYEEYKANRKPMPDSLQIQIPYVREIISALNIPILEYEGYEADDVIGTLVN 117 Query: 127 IAEKEGFAVTIISTDKDLMQL------VSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 + + + II+ D+D +QL V T +D E+ +E+V +K+G+ ++V Sbjct: 118 RLKNQNLEIVIITGDRDTLQLLDKNVIVKIVTTRFDKTTEDLYTVENVKEKYGVFAHQVV 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD+ DNIPG+ GIG KTA LL+EY LENI N IK RE + + A Sbjct: 178 DYKALVGDASDNIPGVKGIGGKTAIKLLEEYQTLENIYQNLKNIKD-SLREKLEAGKDMA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 LS+KL + D+PI + LE L + + +L L LEF I R+ Sbjct: 237 FLSKKLATIICDLPIEVTLEELKRREWDKKKLYQILLQLEFKSFIKRLG 285 >gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel] gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel] Length = 849 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 200/520 (38%), Positives = 314/520 (60%), Gaps = 39/520 (7%) Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL 513 K+ ++ LK+ H+ K L++ + + F+D+MLMSY LD+ H + + ++L Sbjct: 359 KQILASDSVLKVVHDAK---LIMQHFP-DLGVFDDVMLMSYSLDASSHDHSLTGMTYRYL 414 Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573 Q+ + + ++QL ++R KL+ ++L VY +L+ Sbjct: 415 H------------------------QKFPAKMACALVQLHSVMREKLLSDRLFTVYYQLE 450 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 +P++ V+ +M+ GI++D ++LKQ+S + ++ SLE IY L+G KFN++S +QLG +L Sbjct: 451 RPLVRVLYEMQEVGIEVDTEILKQLSRDFHGSIRSLEREIYGLAGCKFNVASARQLGKLL 510 Query: 634 FTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 F ++ S K +G + T A+ L ++ I +L+WR SK+KSTY D+L + Sbjct: 511 FERMGLSSSTKKMPSGSYSTNAEVLTELAAEGVEIADKVLKWRHFSKLKSTYVDALLRQV 570 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752 T+RVHT YS+ +T TGR++S PNLQNIPI++ G +IR+AF++ KL+SADYSQ Sbjct: 571 ETGTERVHTSYSMVATATGRISSSNPNLQNIPIRSKEGTEIRKAFVAREGHKLVSADYSQ 630 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 +EL+I+AHIA + F DIH++ A +IFG ++ P++RR AK+INF IIYG+ Sbjct: 631 MELKIMAHIAGVQAFRDAFAEGKDIHQVTAQQIFGDDV--TDPELRRRAKSINFGIIYGM 688 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 SPF LA + I R EA Y+++YF +P I Y+E K + R+ GY T FGR+ + I Sbjct: 689 SPFGLAKNVGITRQEATQYVEQYFRSYPEIKNYMEAIKAYARKYGYTRTAFGRKCYVPGI 748 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 NS + +IR ERAAINAPIQG+AAD+ ++AMI++ LE ++LQ+HDEL+ EV Sbjct: 749 NSAQHAIRGFAERAAINAPIQGTAADVVKKAMINLRDKLE----VGTIILQVHDELLVEV 804 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 PE + +Q++ ME + VPL+V+I V N+W Sbjct: 805 PESHVDNVAQLMKEVMEGVA----SFSVPLRVDIGVGNSW 840 Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 111/284 (39%), Positives = 173/284 (60%), Gaps = 5/284 (1%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 +VD F++RA+YA P L G P+ + GF N+L K L E A + AV+FD Sbjct: 6 VVDAYGFLFRAYYALPQLHTSQ-GAPIGGVYGFINILLKHLM----EHDADYLAVVFDTG 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 + FR+ +YP YK NRP++PE LL Q +R A A GI + E+Q FEADD+IAT + Sbjct: 61 SKNFRHAMYPQYKMNRPRLPEDLLRQFSPLREAVSALGIASEEVQNFEADDVIATLSTKY 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 + V I++ DKDL+QL+ ++D ++ + E+V+ K+G+ P++++ + ALTGD Sbjct: 121 ASQDVQVRIVTADKDLLQLIGEHVQVFDPIRNRYLTNEYVVDKFGVTPDRLLDVLALTGD 180 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248 + DNIPG+P IG KTAA L+ ++G+L+N+L A +++QKK RE ++++A+ A LSR LV Sbjct: 181 TSDNIPGVPSIGVKTAAKLVNQFGSLDNVLNCAEQVEQKKCREMLIQHADQATLSRDLVS 240 Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 L+ V L+ + RL++FL+ E L ++ Y Sbjct: 241 LQRTVEFDGDLDKYAKRPPDTERLLAFLEKYELGSLRGKIEQCY 284 >gi|295696996|ref|YP_003590234.1| DNA polymerase I [Bacillus tusciae DSM 2912] gi|295412598|gb|ADG07090.1| DNA polymerase I [Bacillus tusciae DSM 2912] Length = 890 Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust. Identities = 214/517 (41%), Positives = 319/517 (61%), Gaps = 15/517 (2%) Query: 460 EHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518 E L + ++IK K++ R G ++ G D++L +Y+++ D+ + +++L + Sbjct: 385 EPGLTVLYDIKSWKVLADRLGFTLPGDAFDVLLAAYLINPQDGHPDLTEVFERYLGVSVP 444 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 L+ R S + Q + + ++ L+ L + L +Y L+ P+ Sbjct: 445 P-LEGRGSP------QGEERQRWWALYAAALAGVYPALKRDLEIRGLWPLYHNLELPLSF 497 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V+++ME TG+++D L+ + S + LEE IY L+G FNL+SPKQL +ILF KL Sbjct: 498 VLAKMERTGVRVDATRLRSLGETFSTEIARLEEEIYKLAGTTFNLNSPKQLAEILFDKLG 557 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P KTKTG + T A LE++ + I++ IL+WRQL K++STY + L I T + Sbjct: 558 LPPQKKTKTG-YSTGADVLEKL-APYHEIVQRILDWRQLIKLQSTYIEGLLKVIRPETGK 615 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRI 757 +HT + A T TGRL+S +PNLQNIP++ + G+++R+AFI S K++SADYSQIELR+ Sbjct: 616 IHTCFQQAVTATGRLSSTDPNLQNIPVRVEEGRRLRQAFIPSESGWKIVSADYSQIELRV 675 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 LAH +K L Q F + LDIH AAE+F V E+V+P MRR AK +NF I+YGIS + L Sbjct: 676 LAHFSKDPALVQAFRDDLDIHARTAAEVFEVPQEQVTPGMRRQAKAVNFGIVYGISDYGL 735 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 + L IPR EAA++I RYF +FP + Y+E+T R+NG+V T+ GRR + +I+S Sbjct: 736 SQNLGIPRKEAAEFIARYFAKFPRVKSYMEETVAAARKNGFVTTLLGRRRYLPDIHSSNY 795 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 ++R+ ER A+N PIQGSAADI +RAM+ V + L + KMLLQ+HDELVFEVP EE+ Sbjct: 796 NLRSFAERTAMNTPIQGSAADIIKRAMVEVDRRLTEGDFRAKMLLQVHDELVFEVPPEEV 855 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ +ME A ++L VPLKV+I +NW E Sbjct: 856 GALQDMVKQAMESA----VSLDVPLKVDIHAGDNWYE 888 Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 119/301 (39%), Positives = 173/301 (57%), Gaps = 12/301 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S +YRAF+A PLLS +G NA+ GF ML +LLQ R +H AV FD Sbjct: 8 LLLIDGNSILYRAFFALPLLS-NAEGKHTNAVYGFAMMLLRLLQEER----PTHVAVAFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E Y DYK R K P+ L Q P+ R A GIP +E +G+EADD+I T + Sbjct: 63 VGKETFRHEFYADYKGTREKTPDELSEQFPMAREMLGAMGIPVLEAEGYEADDLIGTMSR 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKE-EKIDIEHVIKKWGIPPEKMVCL 182 AE +G V +++ DKDL+QLVS T ++E E+ V K++G+ PE++V L Sbjct: 123 EAEADGVQVVVLTGDKDLLQLVSSHVTAVLTRRGIREVERYQPADVEKRFGLRPEQIVDL 182 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD+ DNIPG+PG+G +TAA LLQ YGN+E + + + + K + + E+ + A L Sbjct: 183 KGLMGDTSDNIPGVPGVGERTAAKLLQAYGNVEGVYQHLNEVS-GKLQGRLAEHRDQAFL 241 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY--DCDAANIE 300 S++L + +VP+ E L + + L+ L F L+ R+ + D D A Sbjct: 242 SKRLARIHREVPLERRWEDLRWVPAPAREVRTALQKLGFRSLLERIGEVFPEDADGAEGT 301 Query: 301 P 301 P Sbjct: 302 P 302 >gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108] gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108] Length = 850 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 218/512 (42%), Positives = 319/512 (62%), Gaps = 30/512 (5%) Query: 469 IKYD-KLVLHRYGI----SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523 I YD K + H+ + +++ ED+M+ SYVLDS RSS+++ ++ +L+ T E +K Sbjct: 361 IVYDLKNIFHQLNLEDTDNIKNCEDVMIASYVLDSTRSSYELETLFVSYLN-TDIEAVKK 419 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQ-LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K + + V+L+ LW L + + +YE +++P+I V+ + Sbjct: 420 DKKMVSV-----------------VLLKRLWDDLLRLIDLNSCQFLYENIERPLIPVLYE 462 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME TG ++D+D L Q + EI +L LE IY ++GE FN++SPKQL ILF KLK P Sbjct: 463 MEKTGFKVDRDALLQYTKEIENKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVI 522 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T A+ LE++ + I+ IL++R +KI +TY L IN + RVHT Sbjct: 523 KKTKTG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTT 580 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 + T TGRLAS +PNLQNIP+K D G+ IR+ F+ LI ADYSQIELRILAHI+ Sbjct: 581 FIQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEEGHVLIDADYSQIELRILAHIS 640 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L F+N++DIH AAE+FGV+I V+P+MR AK +NF I+YGIS + LA ++ Sbjct: 641 EDERLINAFKNNIDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIK 700 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 I R EAA++I +YF R+P + EY++ F R+NGYV T+F R+ + +I S + R+ Sbjct: 701 ISRKEAAEFINKYFERYPKVKEYLDNIVRFARENGYVLTLFNRKRYVKDIKSANRNARSY 760 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER A+N+PIQGSAADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE + Sbjct: 761 AERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKR 820 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I+ ME A + L+VPL V +K NW E Sbjct: 821 IVKREMENA----VALKVPLVVEVKEGLNWYE 848 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 129/431 (29%), Positives = 219/431 (50%), Gaps = 34/431 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L + DG+S +YRAF+A P L+ + +P NAI GF N++ K L+ + + IA V FD Sbjct: 3 LVIFDGNSILYRAFFALPELTTSSN-IPTNAIYGFINVILKYLEQEKPDYIA----VAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 R Y +YKANR +P+ L Q+P VR A IP +E +G+EADD+I + Sbjct: 58 KRGREARKSEYQEYKANRKPMPDNLQVQIPYVREILYALNIPIVEFEGYEADDVIGSLVN 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180 + G + II+ D+D +QL+ + +D E+ IE++ +K+G+ ++ Sbjct: 118 KFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDRTMEDLYTIENIKEKYGVWANQVP 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DNIPG+ GIG K+A LL+EY +LE I N +IK RE + + A Sbjct: 178 DYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKGSI-REKLEAGKDMA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LS++L + D+P+ + LE L ++ N RL L LEF +I R+ + + ++ Sbjct: 237 FLSKRLATIVCDLPLNVNLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLSENIQFEFVQ 296 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKIN--SEQTPQKLFLERLQKL 358 DI E + E++ + I++ + + Q K +Q +F+ R + L Sbjct: 297 QRT-DIPDVEQR------ELESISRIRSKEIPLMFVQDEKCFYLYDQESNTVFVTRDRHL 349 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 + + +D+ + + K+I + + DT + + + + IA LD Sbjct: 350 VEEILKSDTVKIVYDLKNIFHQLN------------LEDTDNIKNCEDVMIASYVLDST- 396 Query: 419 DTSFKVETIFI 429 +S+++ET+F+ Sbjct: 397 RSSYELETLFV 407 >gi|46907796|ref|YP_014185.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365] gi|254824376|ref|ZP_05229377.1| DNA polymerase I [Listeria monocytogenes FSL J1-194] gi|254931505|ref|ZP_05264864.1| DNA polymerase I [Listeria monocytogenes HPB2262] gi|255520153|ref|ZP_05387390.1| DNA polymerase I [Listeria monocytogenes FSL J1-175] gi|46881065|gb|AAT04362.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365] gi|293583057|gb|EFF95089.1| DNA polymerase I [Listeria monocytogenes HPB2262] gi|293593611|gb|EFG01372.1| DNA polymerase I [Listeria monocytogenes FSL J1-194] gi|328474918|gb|EGF45718.1| DNA polymerase I [Listeria monocytogenes 220] gi|332312007|gb|EGJ25102.1| DNA polymerase I [Listeria monocytogenes str. Scott A] Length = 875 Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust. Identities = 235/589 (39%), Positives = 344/589 (58%), Gaps = 24/589 (4%) Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450 SF+I+T+ + A+ + + T+ FI L+VH+SQ + T E Sbjct: 300 SFEIVTELKEKHFGGKTALYVELENDNYHTAN-----FIGLTVHSSQGTYFFTKETAESS 354 Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 +K+ E++ K+ ++ K + ++R G+++ G DIML SY+L+ S D S+A Sbjct: 355 EVFRKWVESDQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVA 413 Query: 510 QKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 + YT E K K S P +S V H + I L L L + Sbjct: 414 IRH-DYTEVETDEAVYGKGAKRSTP----EESIVAAHLARKAVAIADLEKRLVDDLEENE 468 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L + E L+ P+ V+++ME+ G+ +D + L+ + E++ L +LEE+I+ L+GE+FN++ Sbjct: 469 QLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEFNIN 528 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG ILF KL P+ KTKTG + T A LE + G + II IL +RQL KI+STY Sbjct: 529 SPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTY 586 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743 + L +K T +VHT ++ T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P Sbjct: 587 IEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGW 646 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 K+ SADYSQ+ELR+LAHI++ L F++ DIH A ++F V ++V MRR AK Sbjct: 647 KMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKA 706 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R EA D+I RYF +P + EY++ F ++ GYVETI Sbjct: 707 VNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETIL 766 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + EI S ++R ER A+N PIQGSAADI ++AMI + + L KL K+LLQ Sbjct: 767 HRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQ 826 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE PE EI +I+ ME A + L VPLKV+ + W Sbjct: 827 VHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 871 Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 116/289 (40%), Positives = 161/289 (55%), Gaps = 10/289 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S RAFYA PLL+ G+ NA+ GF ML +L+ + SH V Sbjct: 2 NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + YK R K P L Q P +R A+ IP E+ +EADDII T Sbjct: 57 FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 T AE +G V II+ D+DL QL S T +Y T K E E + +K+ + PE+++ Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239 ++ L GDS DNIPGIPG+G KTA LL E+G +E++L +A I KK +E +LE E Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 A LS++L + D PI +E + ++I LK + FT L+ + Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNI 285 >gi|47093102|ref|ZP_00230879.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858] gi|226224166|ref|YP_002758273.1| DNA polymerase I [Listeria monocytogenes Clip81459] gi|254852188|ref|ZP_05241536.1| DNA polymerase I [Listeria monocytogenes FSL R2-503] gi|300764769|ref|ZP_07074759.1| DNA polymerase I [Listeria monocytogenes FSL N1-017] gi|47018542|gb|EAL09298.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858] gi|225876628|emb|CAS05337.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605493|gb|EEW18101.1| DNA polymerase I [Listeria monocytogenes FSL R2-503] gi|300514445|gb|EFK41502.1| DNA polymerase I [Listeria monocytogenes FSL N1-017] Length = 875 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 235/589 (39%), Positives = 344/589 (58%), Gaps = 24/589 (4%) Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450 SF+I+T+ + A+ + + T+ FI L+VH+SQ + T E Sbjct: 300 SFEIVTELKEKHFGGKTALYVELENDNYHTAN-----FIGLTVHSSQGTYFFTKETAESS 354 Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 +K+ E++ K+ ++ K + ++R G+++ G DIML SY+L+ S D S+A Sbjct: 355 EVFRKWVESDQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVA 413 Query: 510 QKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 + YT E K K S P +S V H + I L L L + Sbjct: 414 IRH-DYTEVETDEAVYGKGAKRSTP----EESIVAAHLARKAVAIADLEKRLVDDLEENE 468 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L + E L+ P+ V+++ME+ G+ +D + L+ + E++ L +LEE+I+ L+GE+FN++ Sbjct: 469 QLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEFNIN 528 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG ILF KL P+ KTKTG + T A LE + G + II IL +RQL KI+STY Sbjct: 529 SPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTY 586 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743 + L +K T +VHT ++ T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P Sbjct: 587 IEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGW 646 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 K+ SADYSQ+ELR+LAHI++ L F++ DIH A ++F V ++V MRR AK Sbjct: 647 KMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKA 706 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R EA D+I RYF +P + EY++ F ++ GYVETI Sbjct: 707 VNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETIL 766 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + EI S ++R ER A+N PIQGSAADI ++AMI + + L KL K+LLQ Sbjct: 767 HRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQ 826 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE PE EI +I+ ME A + L VPLKV+ + W Sbjct: 827 VHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 871 Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 115/289 (39%), Positives = 161/289 (55%), Gaps = 10/289 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S RAFYA PLL+ G+ NA+ GF ML +L+ + SH V Sbjct: 2 NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + YK R K P L Q P +R A+ IP E+ +EADDII T Sbjct: 57 FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 T AE +G V II+ D+DL QL S T +Y T K E E + +K+ + P++++ Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPQQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239 ++ L GDS DNIPGIPG+G KTA LL E+G +E++L +A I KK +E +LE E Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 A LS++L + D PI +E + ++I LK + FT L+ + Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNI 285 >gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5] Length = 958 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 215/536 (40%), Positives = 336/536 (62%), Gaps = 13/536 (2%) Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504 T E ++ FEN+ KIG NIK+D +VL + G+ +RG + D M++ Y+LD S H+ Sbjct: 427 TAEYTEIVRPLFENDRIAKIGQNIKFDLMVLRQLGLEIRGRKYDTMILHYLLDP-ESRHN 485 Query: 505 IASIAQKWLSYTRKEI---LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561 + ++A+K+L+Y EI + + +D ++ +V+E+A E+++V L+L L P++ Sbjct: 486 MNALAEKYLNYKPIEIETLIGKGSKQLTMDLVNVERVKEYAAEDADVTLRLKHALYPQIE 545 Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-K 620 L H+Y +++PMI V++ +E+ G++ID + L S E+S+ L LE I + +GE + Sbjct: 546 ELGLQHLYFEIEEPMIAVLADIEMAGVRIDSEALAVYSVELSRRLAELEAAICEEAGESQ 605 Query: 621 FNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 N++S +QLG++LF K++ K TKT Q+ T +D Q + I+ ILE+R + K Sbjct: 606 LNINSARQLGEVLFGKMRIAEKPKMTKTKQF-CTDEDYLQSFAHKHRIVDLILEYRGVKK 664 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI- 738 + STY ++LP +N+RT R+HT ++ A T TGRL+S PNLQNIP++ ++G++IRRAFI Sbjct: 665 LLSTYVEALPQLVNRRTGRIHTSFNQAVTATGRLSSTNPNLQNIPVREEMGRRIRRAFIP 724 Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 S L+SADYSQ+ELR++AH++ L F + DIH AA++F +++V+ + R Sbjct: 725 SDEEHLLLSADYSQVELRLMAHLSGDESLIAAFAHGEDIHAATAAKLFNKTLDEVTSEER 784 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 R AKT NF IIYGIS F L+ +L IPR EA + I YF +P + EY++ ++ G+ Sbjct: 785 RRAKTANFGIIYGISAFGLSQRLEIPRKEAKEIIDGYFASYPKVQEYMDNVVAKAKEEGF 844 Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 V TIFGRR + ++I S + R + ER A+NAPIQGSAADI + AMI+VH+ + + Sbjct: 845 VSTIFGRRRYLNDIASHNAIARGLAERNAVNAPIQGSAADIMKIAMINVHRRFAAEGIRS 904 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 K++LQ+HDELV ++ E I+ +ME A L+V L V+ V NW E Sbjct: 905 KVILQVHDELVVDMLRSEQERVVAIVTEAMESAA----ALKVRLVVDYGVGGNWLE 956 Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 103/288 (35%), Positives = 161/288 (55%), Gaps = 15/288 (5%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFLVD + I++ +YA P+ +R G+ + + GF K L++ +K V Sbjct: 4 LFLVDAYALIFKYYYAFLGRPMRNRA--GMNTSVVFGFV----KFLRDIQKRERPDLLGV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD +FR E++P+YKANR + PE +L +P V+ +A IP +E++G+EADD+I T Sbjct: 58 AFDPKGGSFRREVFPEYKANRAETPEDILLSVPYVKRVLEAMCIPILEVEGYEADDVIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 + + G+ V +++ DKD QLV +Y E +D + + +K+GI + Sbjct: 118 LSQKGVEAGYEVFMVTPDKDYGQLVRDNCKIYKQKGADGSIEIVDRDSIREKYGIDDPVL 177 Query: 180 VC-LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 V + AL GD+ DNIPG+PGIG K+A L+QE+G +ENIL N S+IK K+ E I + + Sbjct: 178 VRDILALWGDASDNIPGVPGIGEKSACKLVQEWGTVENILDNVSKIKGKQ-GEKIAAWGD 236 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 RL++ L + DVPI E L + D + L + L+F +N Sbjct: 237 KLRLAKHLTTICLDVPIPFRPEDLTVCDPHIDELKAVFAELDFKAFMN 284 >gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic] gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic] Length = 875 Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust. Identities = 215/492 (43%), Positives = 300/492 (60%), Gaps = 33/492 (6%) Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 ED+ LM Y L +G S ++ KE+LK ++ ++ IE++ Sbjct: 411 EDLELMQYALSAGLSQKNLF-----------KEVLK------------ETWIENIIIESA 447 Query: 547 NVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 +++ L + +L K +Y +D P+ ++ +ME GI +D + LKQ+SAE Sbjct: 448 KIVINFITLYKQTIWELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYLKQLSAEFG 507 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINC 662 +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A K + T A+ LE+++ Sbjct: 508 TEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSE 567 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 I +L WRQL+K+K+TY DSLP I+ T RVHT + ST TGRL+S EPNLQN Sbjct: 568 HGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTKFLQTSTTTGRLSSQEPNLQN 627 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +PI++ G +IR+AFI+ KLISADYSQIELRIL+HIA I L Q F N DIH A Sbjct: 628 VPIRSSEGNQIRQAFIAKEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +IF + +++ + RR AK INF IIYGIS F LA QL + EA++YIK+YF + G+ Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGV 747 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 EY+E+TK F NGYV FGR+ I+ K ++ ERAAINAPIQG+ ADI + Sbjct: 748 QEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNADIIKI 805 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI++ + +E KL T+++LQIHDEL+FE P +E+ + II ME + N+ VP+ Sbjct: 806 AMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NMDVPI 861 Query: 963 KVNIKVSNNWQE 974 I+ NNW E Sbjct: 862 ITEIRAGNNWME 873 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 124/294 (42%), Positives = 176/294 (59%), Gaps = 7/294 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M ++N L L+DG F++RA+YA PL S K G PV A+ GF +ML KLL + + + Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLSDFKPK---- 54 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD FR++IYPDYKANRP PE L+ QLPLVR P +E G+EADD Sbjct: 55 HVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADD 114 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IIAT+ G V IIS+DKDL+QL++ +YD +K + I + V+KK+G +K+ Sbjct: 115 IIATFATKTAALGEHVVIISSDKDLLQLMTENIKIYDPLKGKYITEDDVVKKFGTTSDKL 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GD DNIPG+P IG KTA+ L+ ++G++ENI + ++ K+RE + ET Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSRET 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 A +S +L+ L ++V + L +L N +L FL+ F L RV D Sbjct: 235 ALISWQLIGLNSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288 >gi|254831966|ref|ZP_05236621.1| DNA polymerase I [Listeria monocytogenes 10403S] Length = 875 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 230/552 (41%), Positives = 328/552 (59%), Gaps = 19/552 (3%) Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 FI L+VH+SQ + T E +K+ E++ K+ ++ K + ++R G+++ G Sbjct: 332 FIGLTVHSSQGTYFFTKETAESSEAFRKWVESDQ-TKVVYDAKKTIVAMNRIGLAISGIT 390 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541 DIML SY+L+ S D S+A + YT E K K S P +S V H Sbjct: 391 FDIMLASYLLNPSDSIDDFTSVAVRH-DYTEVETDEAVYGKGAKRSTP----EESIVAAH 445 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 + I L L L + L + E L+ P+ V+++ME+ G+ +D D L+ + E Sbjct: 446 LARKAVAIADLEKRLVDDLEKNEQLALMEDLELPLTFVLAEMEMQGVSVDTDRLEDMKVE 505 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + L +LE +I+ L+GE+FN++SPKQLG ILF KL+ P KTKTG + T A LE + Sbjct: 506 LGGRLKTLEASIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTG-YSTAADVLESL- 563 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 G + II IL +RQL KI+STY + L +K T +VHT ++ T TGRL+S++PNLQ Sbjct: 564 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 623 Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 NIPI+ + G+KIR+ F+ S P K+ SADYSQ+ELR+LAHI++ L F++ DIH Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A ++F V E+V MRR AK +NF I+YGIS + L+ L I R EA D+I RYF +P Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYP 743 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 + EY++ F ++ GYVETI RR + EI S ++R ER A+N PIQGSAADI Sbjct: 744 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 803 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 ++AMI + + L KL K+LLQ+HDEL+FE PE EI +I+ ME A + L V Sbjct: 804 KKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 859 Query: 961 PLKVNIKVSNNW 972 PLKV+ + W Sbjct: 860 PLKVDSAFGDTW 871 Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 116/289 (40%), Positives = 161/289 (55%), Gaps = 10/289 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S RAFYA PLL+ G+ NA+ GF ML +L+ + SH V Sbjct: 2 NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + YK R K P L Q P +R A+ IP E+ +EADDII T Sbjct: 57 FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 T AE +G V II+ D+DL QL S T +Y T K E E + +K+ + PE+++ Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239 ++ L GDS DNIPGIPG+G KTA LL E+G +E++L +A I KK +E +LE E Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 A LS++L + D PI +E + ++I LK + FT L+ + Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNI 285 >gi|328465601|gb|EGF36830.1| DNA polymerase I [Listeria monocytogenes 1816] Length = 694 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 235/589 (39%), Positives = 344/589 (58%), Gaps = 24/589 (4%) Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450 SF+I+T+ + A+ + + T+ FI L+VH+SQ + T E Sbjct: 119 SFEIVTELKEKHFGGKTALYVELENDNYHTAN-----FIGLTVHSSQGTYFFTKETAESS 173 Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 +K+ E++ K+ ++ K + ++R G+++ G DIML SY+L+ S D S+A Sbjct: 174 EVFRKWVESDQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVA 232 Query: 510 QKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 + YT E K K S P +S V H + I L L L + Sbjct: 233 IRH-DYTEVETDEAVYGKGAKRSTP----EESIVAAHLARKAVAIADLEKRLVDDLEENE 287 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L + E L+ P+ V+++ME+ G+ +D + L+ + E++ L +LEE+I+ L+GE+FN++ Sbjct: 288 QLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEFNIN 347 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG ILF KL P+ KTKTG + T A LE + G + II IL +RQL KI+STY Sbjct: 348 SPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTY 405 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743 + L +K T +VHT ++ T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P Sbjct: 406 IEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGW 465 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 K+ SADYSQ+ELR+LAHI++ L F++ DIH A ++F V ++V MRR AK Sbjct: 466 KMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKA 525 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R EA D+I RYF +P + EY++ F ++ GYVETI Sbjct: 526 VNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETIL 585 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + EI S ++R ER A+N PIQGSAADI ++AMI + + L KL K+LLQ Sbjct: 586 HRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQ 645 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE PE EI +I+ ME A + L VPLKV+ + W Sbjct: 646 VHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 690 Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 1/103 (0%) Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPGIPG+G KTA LL E+G +E++L +A I KK +E +LE E A LS++ Sbjct: 2 GDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKELAILSKE 61 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 L + D PI +E + ++I LK + FT L+ + Sbjct: 62 LATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNI 104 >gi|16803605|ref|NP_465090.1| DNA polymerase I [Listeria monocytogenes EGD-e] gi|47096730|ref|ZP_00234315.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854] gi|224499777|ref|ZP_03668126.1| DNA polymerase I [Listeria monocytogenes Finland 1988] gi|224501495|ref|ZP_03669802.1| DNA polymerase I [Listeria monocytogenes FSL R2-561] gi|254828200|ref|ZP_05232887.1| DNA polymerase I [Listeria monocytogenes FSL N3-165] gi|254898268|ref|ZP_05258192.1| DNA polymerase I [Listeria monocytogenes J0161] gi|254912239|ref|ZP_05262251.1| DNA polymerase I [Listeria monocytogenes J2818] gi|254936566|ref|ZP_05268263.1| DNA polymerase I [Listeria monocytogenes F6900] gi|284801956|ref|YP_003413821.1| DNA polymerase I [Listeria monocytogenes 08-5578] gi|284995098|ref|YP_003416866.1| DNA polymerase I [Listeria monocytogenes 08-5923] gi|16410994|emb|CAC99643.1| DNA polymerase I [Listeria monocytogenes EGD-e] gi|47014914|gb|EAL05862.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854] gi|258600588|gb|EEW13913.1| DNA polymerase I [Listeria monocytogenes FSL N3-165] gi|258609161|gb|EEW21769.1| DNA polymerase I [Listeria monocytogenes F6900] gi|284057518|gb|ADB68459.1| DNA polymerase I [Listeria monocytogenes 08-5578] gi|284060565|gb|ADB71504.1| DNA polymerase I [Listeria monocytogenes 08-5923] gi|293590215|gb|EFF98549.1| DNA polymerase I [Listeria monocytogenes J2818] Length = 875 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 230/552 (41%), Positives = 328/552 (59%), Gaps = 19/552 (3%) Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 FI L+VH+SQ + T E +K+ E++ K+ ++ K + ++R G+++ G Sbjct: 332 FIGLTVHSSQGTYFFTKETAESSEAFRKWVESDQ-TKVVYDAKKTIVAMNRIGLAISGIT 390 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541 DIML SY+L+ S D S+A + YT E K K S P +S V H Sbjct: 391 FDIMLASYLLNPSDSIDDFTSVAVRH-DYTEVETDEAVYGKGAKRSTP----EESIVAAH 445 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 + I L L L + L + E L+ P+ V+++ME+ G+ +D D L+ + E Sbjct: 446 LARKAVAIADLEKRLVDDLEKNEQLALMEDLELPLTFVLAEMEMQGVSVDTDRLEDMKVE 505 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + L +LE +I+ L+GE+FN++SPKQLG ILF KL+ P KTKTG + T A LE + Sbjct: 506 LGGRLKTLEASIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTG-YSTAADVLESL- 563 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 G + II IL +RQL KI+STY + L +K T +VHT ++ T TGRL+S++PNLQ Sbjct: 564 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 623 Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 NIPI+ + G+KIR+ F+ S P K+ SADYSQ+ELR+LAHI++ L F++ DIH Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A ++F V E+V MRR AK +NF I+YGIS + L+ L I R EA D+I RYF +P Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYP 743 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 + EY++ F ++ GYVETI RR + EI S ++R ER A+N PIQGSAADI Sbjct: 744 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 803 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 ++AMI + + L KL K+LLQ+HDEL+FE PE EI +I+ ME A + L V Sbjct: 804 KKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 859 Query: 961 PLKVNIKVSNNW 972 PLKV+ + W Sbjct: 860 PLKVDSAFGDTW 871 Score = 201 bits (510), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 116/289 (40%), Positives = 161/289 (55%), Gaps = 10/289 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S RAFYA PLL+ G+ NA+ GF ML +L+ + SH V Sbjct: 2 NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + YK R K P L Q P +R A+ IP E+ +EADDII T Sbjct: 57 FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 T AE +G V II+ D+DL QL S T +Y T K E E + +K+ + PE+++ Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239 ++ L GDS DNIPGIPG+G KTA LL E+G +E++L +A I KK +E +LE E Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 A LS++L + D PI +E + ++I LK + FT L+ + Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNI 285 >gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 882 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 216/527 (40%), Positives = 316/527 (59%), Gaps = 26/527 (4%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 +IL LK E+ + K HN K +LHR GI++R D M+ +Y+L+ S+ D+ Sbjct: 374 KILEILKTICEDGNIKKYCHNGKETIRLLHRNGITLRQLAFDTMIAAYLLNPASSNQDLE 433 Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 I+ + L+ +L +P Q H I++L LL KL + Sbjct: 434 DISLEHLN----AVLPGEDRKLP--------AQAH------CIMELAQLLDNKLKLYGQD 475 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 ++ ++ P+ ++++MEI G+ +D+ L+ +S E+ + + L + IY L+G +FN++SP Sbjct: 476 RLFYEIEIPLAGILAEMEIEGVAVDKKQLEAMSEELGRQIEKLADEIYRLTGREFNINSP 535 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG +LF LK P KTKTG + T A LE++ + K ILE+RQ++K+KSTYAD Sbjct: 536 KQLGKVLFEDLKLPVIKKTKTG-YSTDADVLEELAAAHEAVAK-ILEYRQMAKLKSTYAD 593 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745 L IN T ++HT + T TGRL+S +PNLQNIPI+ + G+ IR+ FI P L Sbjct: 594 GLAALINPETGKLHTTFHQTVTNTGRLSSSDPNLQNIPIRLEAGRLIRKVFIPGRPENLL 653 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 ++ADYSQIELR+LAHI+ L + F+N DIH AAEIF V E+V+ +MR AK +N Sbjct: 654 LTADYSQIELRVLAHISGDPALIKAFKNGEDIHTRTAAEIFAVRPEEVTREMRTRAKAVN 713 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YG+S F LA +++ R EA YI+ YF R+ G+ +YIE+ RQ GYV T+ R Sbjct: 714 FGIVYGLSDFGLARDIKVSRQEARRYIENYFARYAGVKDYIERIIREARQKGYVTTLLNR 773 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + ++ SP +IR+ ER A+N PIQGSAADI + AM+++H+ L +H L KM+LQ+H Sbjct: 774 RRYLPDLFSPNRTIRSFGERTAMNTPIQGSAADIIKLAMVNIHRELAEHGLKAKMILQVH 833 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+F+ P EI ++ ME A + L VPL V IK NW Sbjct: 834 DELIFDAPAVEIDQLKDLVKRCMENALV----LEVPLLVEIKAGRNW 876 Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 110/286 (38%), Positives = 164/286 (57%), Gaps = 10/286 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + ++DG+S +RA++A P LS G+ NA+ GF NML K+L + IA V FD Sbjct: 6 MVIIDGNSLAHRAYHAIPPLSTSQ-GILTNAVYGFTNMLLKILAEEHPDRIA----VAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +TFR++ + YKA+RP P+ L PQ P+++ +A I E +G+EADD+I T + Sbjct: 61 KGKITFRHDDFEKYKAHRPATPDDLRPQFPVLKEVLKAMRIQVFEAEGYEADDLIGTLSA 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AE+ G I++ D+D +QLVSP T + K ++ D V +++GI P + Sbjct: 121 RAEQAGLRTIIVTGDRDALQLVSPLTSVRLVKKGISELDEYDEGMVWQRYGITPRQYADF 180 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + LTGD+ DNIPGIPGIG KTA+ LL+EYG+LE I+ +A + + E + Y A L Sbjct: 181 KGLTGDASDNIPGIPGIGEKTASRLLKEYGSLEEIIAHADELAGRT-GELVKTYKHQAEL 239 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 S+KL + DVP+ I L + + L+ K LEF LI + Sbjct: 240 SKKLATIHRDVPVEIDLALCRWQGPDHKELLEIFKKLEFKSLIKSI 285 >gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725] Length = 850 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 215/511 (42%), Positives = 318/511 (62%), Gaps = 28/511 (5%) Query: 469 IKYD-KLVLHRYGI----SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS 523 I YD K + H+ + +++ ED+M+ SYVLDS RSS+++ ++ ++SY +I Sbjct: 361 IMYDLKNIFHQLNLEDTNNIKNCEDVMIASYVLDSTRSSYELETL---FVSYLNTDIEAV 417 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 +K + I + ++ +LW L + + +YE +++P+I V+ +M Sbjct: 418 KK--------------DKKIVSVVLLKRLWDELLRLIDLNSCQFLYESIERPLIPVLYEM 463 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E TG ++D+D L Q + EI +L LE IY ++GE FN++SPKQL ILF KLK P Sbjct: 464 EKTGFKVDRDALIQYTKEIENKILKLETQIYQIAGEWFNINSPKQLSYILFEKLKLPVIK 523 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 KTKTG + T A+ LE++ + I+ IL++R +KI +TY L IN + RVHT + Sbjct: 524 KTKTG-YSTDAEVLEEL-FDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHTTF 581 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 T TGRLAS +PNLQNIP+K D G+ IR+ F+ LI ADYSQIELRILAHI++ Sbjct: 582 IQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISE 641 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L F+N++DIH AAE+FGV+I V+P+MR AK +NF I+YGIS + LA ++I Sbjct: 642 DERLISAFKNNVDIHSQTAAEVFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKI 701 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 R EAA++I +YF R+P + EY++ T F R NG+V T+F R+ + +I S ++R Sbjct: 702 SRKEAAEFINKYFERYPKVKEYLDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYA 761 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER A+N+PIQGS ADI + AMI V++ L+++ L +K++LQ+HDEL+ E P EE +I Sbjct: 762 ERIAMNSPIQGSPADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEI 821 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME A + L+VPL V +K NW E Sbjct: 822 VKREMENA----VRLKVPLVVEVKEGLNWYE 848 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 163/291 (56%), Gaps = 12/291 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L + DG+S +YRAF+A P L+ ++ +P NAI GF N++ K L+ + + + AV FD Sbjct: 3 LVIFDGNSILYRAFFALPELTTSNN-IPTNAIYGFVNVILKYLEQEKPD----YVAVAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 R Y +YKANR +P+ L Q+P VR AF IP IE +G+EADD+I + Sbjct: 58 KRGREARKSEYEEYKANRKPMPDNLQVQIPYVREILYAFNIPIIEFEGYEADDVIGSLVN 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180 + G + II+ D+D +QL+ + +D E+ +E+V +K+G+ ++ Sbjct: 118 QFKNTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDKTVEDLYTVENVKEKYGVWANQVP 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DNIPG+ GIG K+A LL+EY +LE I N +IK RE + + A Sbjct: 178 DYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKS-SIREKLEAGKDMA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 LS++L + D+P+ + LE L ++ N RL L LEF +I R+ + Sbjct: 237 FLSKRLATIVCDLPLNVKLEDLRTKEWNKERLYEILVQLEFKSIIKRLGLS 287 >gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 885 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 225/616 (36%), Positives = 364/616 (59%), Gaps = 20/616 (3%) Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 N D +K+ + +Q+L + I+ + D F + ++I + K+ SF Sbjct: 265 NFDELSKLYREYEFNSLLQRL-PVEYQKENIVETSSDDFEYRNMSIDDIIFEIKNSKSFA 323 Query: 424 VETI------------FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471 + I FI + V K ++IL + K FE+E+ K+GHN+K Sbjct: 324 FKIISDGKIYEGIMPNFIAIKVQNEATCIIKIDCKEDILKF-KDVFEDENIEKLGHNLKE 382 Query: 472 DKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530 D + L + I+++ + D + Y+L+S S++DI +I+ + S K++ + Sbjct: 383 DMITLLNFDINIKNYTHDSEIAEYILNSTESNYDINNISNTYFSRGYKDLEELLGKGKKK 442 Query: 531 DKISDSQVQEHAIENS---NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 K SD + E S N + +L + K+ +++ +Y ++ P+I+V+S ME+ G Sbjct: 443 IKFSDLKYDELCKYFSFYLNSVYKLRDVQLEKIRKQEMDDLYFEVELPLIEVLSSMELIG 502 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I+ D +L ++ ++ +L+LE +IY+ +GE+FN++SPK+LG ILF KL +P KTKT Sbjct: 503 IRTDNAILDEIGIDLDNKILNLENDIYEKAGEEFNINSPKKLGLILFDKLGYPVLKKTKT 562 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G + T A LE++ D II ++LE+R+L+K+KSTY + L IN T +H+ ++ Sbjct: 563 G-YSTNADVLEKLK-KDGDIIDDVLEYRKLAKLKSTYVEGLKELINVATGHIHSHFNQTI 620 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGR++S PNLQNIPIKTD G+ IR+AF+S L+ ADYSQIELR+LA I+K + Sbjct: 621 TSTGRISSTNPNLQNIPIKTDEGKLIRKAFLSSEGCVLVDADYSQIELRVLADISKDENM 680 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 FEN DIHR AA++FGV+ E V+P +R AK +NF I+YGIS + L+ L IPR Sbjct: 681 ISAFENDDDIHRRTAAKVFGVDFEDVTPSLRSRAKAVNFGIVYGISDYGLSQNLNIPRKL 740 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A +YI+ Y + GI Y+ + ++NGYV+TI RR + E+++ +IR+ ER A Sbjct: 741 AQEYIENYLLTYDGIKNYMTEEVKLAKKNGYVKTILNRRRYIPELSAKNFNIRSFGERIA 800 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 IN PIQGSAADI + AM+ V+++L+++ L +K++LQIHDEL+ + E+E+ T +++ + Sbjct: 801 INTPIQGSAADIIKIAMVKVYRALKENNLKSKLILQIHDELIVDAREDEVETVKKLMRNI 860 Query: 948 MEKACLPKINLRVPLK 963 ME A + L+V ++ Sbjct: 861 MENAVEMVVKLKVDMQ 876 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 107/290 (36%), Positives = 156/290 (53%), Gaps = 9/290 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + ++DGSS +RAFYA PLL K G+ NAI GF ML +N+ + ++ V FD Sbjct: 5 ILIIDGSSLFFRAFYALPLLKTKR-GIYTNAIYGFIMML----ENAISKINPNNVVVCFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++IY DYK R K P L Q P+VR I +E +EADDI T + Sbjct: 60 MKGKTFRSDIYKDYKGTRQKTPSELEQQFPIVREILSLMNIKTLESPIYEADDIAGTISL 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 IA + + +++ DKD QLV T + T K E I +E + + +GI P++ + L Sbjct: 120 IASENNYESILLTGDKDYFQLVDDNTKVLLTRKGITDLEIISVESIEESYGINPKQFIDL 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD+ DNIPG+PG+G KTA L+ EY N+EN+ N I KK +EN+ A + Sbjct: 180 KGLMGDNSDNIPGVPGVGEKTALKLIHEYSNIENLYDNIDNISGKKLKENLETNKMQAFM 239 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 S+KL + +VP+ + ++ D N L + EF L+ R+ Y Sbjct: 240 SKKLGTIVRNVPLDMEIDDFAYADYNFDELSKLYREYEFNSLLQRLPVEY 289 >gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101] gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101] Length = 1045 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 328/1095 (29%), Positives = 520/1095 (47%), Gaps = 188/1095 (17%) Query: 8 FLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 VDG S +R++YA + G+P + GF L +++ + E + A+ Sbjct: 9 LFVDGHSLAFRSYYAFAKSRNGGLKTSTGIPTSICFGFLKSLLEVINTQKPE----YLAI 64 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E +YKA+RP+ PE L+ L ++ +AF + I G+EADDI+ T Sbjct: 65 AFDLGKPTFRHEADKNYKADRPEPPEDLIIDLGNLQDLLKAFNLTVITAPGYEADDILGT 124 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--------DTVKEEKIDIEHVIKKWGIP 175 A GF V I+S D+DL QL+ + ++ +E E V +K GI Sbjct: 125 LAKKASATGFKVKILSGDQDLFQLIDAEKGISVLHLPGGKGSIPQEFFP-EEVKEKLGIL 183 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P ++V +AL GD DNIPG+ GIG KTA LL EYG L I + +IK +++ +L Sbjct: 184 PTQVVDYKALCGDKSDNIPGVRGIGQKTAVKLLNEYGCLSEIYASLEQIKGANKKKLVLG 243 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E A S+ + + +VP+ I +E + + L+ LE IN++ Sbjct: 244 KTE-AEHSQFMAKIEVNVPLNIDIEDCKFKKIYPSEIEPILQKLELQHFINKIPHLEQQF 302 Query: 296 AANIE-PVVLDINTTENKGIAIET--EIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 + +E LD + + + I+ T EI D +++ + ++ Q + S+ PQ + Sbjct: 303 NSLVEVKSGLDESGIQQQEISQNTLVEIGSDDWFFSAEDTKVAKQQTSTKSKIKPQ--IV 360 Query: 353 ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS 412 + ++KL+ K+VN Q+ ++ T +++ ++ + I Sbjct: 361 DTIEKLN----------KLVNILKEQKNPHI-----PVAWDTETTSLEPRDAELVGIGCC 405 Query: 413 TLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 +D ++ + T T KN +L LK E+ + K+ N K+D Sbjct: 406 WGKNMEDVAY----------IPTGH-KTDKNLDKVTVLESLKPVLESSEYPKVFQNSKFD 454 Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531 +LV GI + G F D ML SYVL+ + H + I ++L R I + Sbjct: 455 RLVFRCQGIKLTGVFFDTMLASYVLNP-EAKHSLEEIYIRYL----------RNVGINLQ 503 Query: 532 KISDSQVQEHAIENSNVI-------LQLWLLLRPKLIVEKLLHVYERLDK---------- 574 D + I + +++ Q+W+ + +VEKL E+ DK Sbjct: 504 SYQDVVSKNQTIADLDILKVADYCGTQVWVTFQ---LVEKLRTELEKADKNKSTEKSLYR 560 Query: 575 -------PMIDVVSQMEITGIQID------------------------------------ 591 P+ V+++ME GI+ID Sbjct: 561 LLVDVEQPLEPVLAEMEFQGIRIDIEYLKKFSVQLKEDLEEIEKRAFKTVDSQVLQKYLQ 620 Query: 592 --------------QDLLKQVSAEISK------------NLLSLEENIYDL-SGEKFNLS 624 Q+L K +S+ I K NL ++E I + + + NL+ Sbjct: 621 TEIHEIDFNSFSNQQELKKAISSPILKAYITKLLKEHRQNLENIESQINQVETRDLLNLN 680 Query: 625 SPKQLGDILFTKLK--FPSGAKTKTGQWKTTAQDLEQINCG--DNPIIKNILEWRQLSKI 680 SP QL ++LF L + KTG + T LE++ +PII IL R L K+ Sbjct: 681 SPSQLSELLFRILNQNHKKSRRIKTG-YSTDVVALEKLQTEPEHHPIIDEILNHRTLYKL 739 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 STY +++P + TQRVHT ++ T TGRL+S EPNLQNIPI T ++IR+AF+ Sbjct: 740 FSTYVEAIPRLVRSDTQRVHTNFNQTQTDTGRLSSSEPNLQNIPIGTKFSRQIRQAFLPK 799 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 L++ADYSQIELRILAH+++ L + ++N+ D+H + A +F E++S + RR Sbjct: 800 KDWLLVAADYSQIELRILAHLSQEPVLIEAYKNNQDVHTVTAKLLF--EKEEISSEERRV 857 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 KTINF +IYG+ +LA ++I E+ ++++Y ++ + Y+EK K GYVE Sbjct: 858 GKTINFGVIYGMGAQKLARSVKITVKESKQFLEKYKQQYSLVFAYLEKLKKQAIAKGYVE 917 Query: 861 TIFGRRIHYDEINSPKSSIRNINE---------------------RAAINAPIQGSAADI 899 TI GRR Y E+ S +IR++ + R+A N+PIQGS+ADI Sbjct: 918 TILGRR-RYFELES--KTIRDLKDKEPEEINLQELKFSQNDAQILRSAANSPIQGSSADI 974 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + AMI ++K L +++ TK+LLQ+HDELVFEVP E+ Q+I +ME A + L+ Sbjct: 975 IKIAMIRLNKILTNYQ--TKLLLQVHDELVFEVPPSELEKMQQLIKSTMENA----VTLK 1028 Query: 960 VPLKVNIKVSNNWQE 974 VPL V+I NW E Sbjct: 1029 VPLIVDIHGGKNWME 1043 >gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila] Length = 893 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 221/615 (35%), Positives = 366/615 (59%), Gaps = 28/615 (4%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-E 425 Y + + + ++ V+KL+ S + + T ++D F + I++S FK E Sbjct: 297 GYKIVKDLGEFEKLVEKLKESPSFAVDLETSSLDPFDCDIVGISVS---------FKPKE 347 Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MR 484 +I L +Q N KE+L LK+ E+ +G N+K+D VL G+ + Sbjct: 348 AYYIPLHHRNAQ-----NLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVP 402 Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRKSSIPIDKISDSQVQE-- 540 D M+ +Y+++ ++ +A K+L Y T + L S S + +D V++ Sbjct: 403 PHFDTMIAAYLIEPNEKKFNLDDLALKFLGYKMTSYQELMSFSSPLFGFSFADVPVEKAA 462 Query: 541 -HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 ++ E++++ +L+ L KL L +V+ +++ P+++V+++ME+ G+ +D + LK++S Sbjct: 463 NYSCEDADITYRLYKTLSLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLS 522 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLE 658 E K L L E IY ++GE FN++SPKQ+ ILF KL P G TKTG + T + LE Sbjct: 523 EEYGKKLEELAEEIYRIAGEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLE 582 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ G++ II ILE+R++ K+KSTY D+LP +N +T R+H ++ T TGRL+S +P Sbjct: 583 EL-AGEHEIIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRLSSSDP 641 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 NLQN+P K++ G++IR+A + P ++SADYSQIELRILAH++ L + FE +D+ Sbjct: 642 NLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEEGIDV 701 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H + A+ IF V E+V+ +MRR K +NFSIIYG++P+ L+ +L +P EA I YF Sbjct: 702 HTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMIVNYFV 761 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 +P + +YI++ + ++ GYV T+FGRR ++ + + + ER AIN PIQG+AA Sbjct: 762 LYPKVRDYIQRVVSEAKEKGYVRTLFGRRRDIPQLMARDRNTQAEGERIAINTPIQGTAA 821 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AMI + + L++ K+ TKM++Q+HDELVFEVP+EE +++ M + Sbjct: 822 DIIKLAMIEIDRELKESKMKTKMIIQVHDELVFEVPDEEKDALVELVKDRMTNV----VK 877 Query: 958 LRVPLKVNIKVSNNW 972 L VPL+V++ + W Sbjct: 878 LSVPLEVDVTIGKTW 892 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 108/264 (40%), Positives = 159/264 (60%), Gaps = 12/264 (4%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS---HFA 62 LFL DG++ YRA+YA G+P NA G ML + + K+ IA+ A Sbjct: 3 RLFLFDGTALAYRAYYALDRSLSTSTGIPTNATYGMARMLVRFI----KDHIATGKDFAA 58 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD A TFR+++ YKA RPK P++L+ QLP ++ +A G+ +E++G+EADDIIA Sbjct: 59 VAFDKKAATFRHKLLETYKAQRPKTPDLLIQQLPYIKKLVEALGMKVLEVEGYEADDIIA 118 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178 T + I++ DKD++QLV+ ++ VK E D + V +K+G+ P++ Sbjct: 119 TLAVKGLPLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPQQ 178 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + L ALTGD IDNIPG+ GIG KTA LL++Y +LE+I+ + + QK R+ +L E Sbjct: 179 IPDLLALTGDEIDNIPGVTGIGEKTAVQLLEKYKDLEDIMNHIHELPQKVRK-ALLRDRE 237 Query: 239 TARLSRKLVMLRTDVPITIPLEHL 262 +A LS+KL +L T+VPI I E L Sbjct: 238 SAVLSKKLAILETNVPIEINWEEL 261 >gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] Length = 878 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 210/498 (42%), Positives = 318/498 (63%), Gaps = 14/498 (2%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDKISDS 536 G+ +RG + D+++ SY+L+ +S+ D+ASIA+ +++ E + + + K+ D Sbjct: 386 GVHLRGIQFDLLIASYLLNPSQSTEDVASIAKTKQYVGVQSDEAVYGKGAK---QKVPDE 442 Query: 537 QV-QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 QV EH + + I L L + ++ L+ P+ ++++ME G+++D + L Sbjct: 443 QVLAEHLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVDVERL 502 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 K++ E+++ L +E+ IY L+G++FN++SPKQLG ILF KL+ P KTKTG + T+A+ Sbjct: 503 KEMGEELAEQLKEVEQEIYRLAGQEFNINSPKQLGVILFEKLQLPVLKKTKTG-YSTSAE 561 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ + I++ IL +RQL K++STY + L +++ T +VHT ++ A T TGRL+S Sbjct: 562 VLEKL-APQHEIVEKILHYRQLGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGRLSS 620 Query: 716 LEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 EPNLQNIPI+ + G+KIR+AFI S P + SADYSQIELR+LAHIA L F + Sbjct: 621 TEPNLQNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHG 680 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 LDIH A +IF V+ E+V+P MRR AK +NF I+YGIS + L+ L I R EAA++IKR Sbjct: 681 LDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGISDYGLSQNLNITRKEAAEFIKR 740 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF FPG+ +Y++ +Q GYV T+ RR + +I S ++R+ ER A+N PIQG Sbjct: 741 YFEIFPGVKQYMKDIVQEAKQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQG 800 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 SAADI ++AMI + K L+ + +MLLQ+HDEL+ E P++EI QI+ ME A Sbjct: 801 SAADIIKKAMIDLSKRLQKENMKARMLLQVHDELILEAPKDEIERLQQIVPEVMENA--- 857 Query: 955 KINLRVPLKVNIKVSNNW 972 + LRVPLKV+ W Sbjct: 858 -VQLRVPLKVDYHFGPTW 874 Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 113/288 (39%), Positives = 169/288 (58%), Gaps = 11/288 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L+ + +H V FD Sbjct: 6 LVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLMKILEEEK----PTHMLVAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ + +YK R K P L Q PL+R A+ I E++ +EADDII T Sbjct: 61 AGKTTFRHKTFEEYKGGRQKTPPELSEQFPLLRELLNAYQIRFYELENYEADDIIGTLCA 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181 AE EGF V +IS D+DL QLVS + D K+ D+E V +K+G+ P++++ Sbjct: 121 KAENEGFEVKVISGDRDLTQLVSDHVTV-DITKKGITDVESYTPETVREKYGLAPQQIID 179 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L+ L GD DNIPG+PGIG KTA LL+E+G++ENIL + +I K +EN+ ++ + A Sbjct: 180 LKGLMGDKSDNIPGVPGIGEKTALKLLKEFGSIENILDSIEQISGNKLKENLEKHRDLAL 239 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 +S++L + D PI + E + + ++I+ K L F L+ ++A Sbjct: 240 MSKQLATILRDAPIDLSFEDIEYRGYDVDKVIALFKELSFNSLLGKMA 287 >gi|16800668|ref|NP_470936.1| DNA polymerase I [Listeria innocua Clip11262] gi|16414087|emb|CAC96831.1| DNA polymerase I [Listeria innocua Clip11262] Length = 875 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 234/589 (39%), Positives = 344/589 (58%), Gaps = 24/589 (4%) Query: 391 SFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEIL 450 SF+I+T+ + A+ + + T+ FI L+VH+SQ + T E Sbjct: 300 SFEIVTELKEQHFGGKTALYVELENDNYHTAN-----FIGLTVHSSQGTYFFTKETAEKS 354 Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 + + + E++ K+ ++ K + ++R G +++G DIML SY+L+ S D S+A Sbjct: 355 AVFRNWVESDE-TKVVYDAKKTMVAMNRIGFAIKGVTFDIMLASYLLNPSDSIDDFTSVA 413 Query: 510 QKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 + YT E K K S P + I V H + I +L L L + Sbjct: 414 VRH-DYTEVETDEAIYGKGAKRSTPEENI----VAAHLARKAVAIAELEKRLVDDLEENE 468 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L + E L+ P+ V++QME+ G+ +D L+ + E++ L +LEE+I+ L+GE+FN++ Sbjct: 469 QLALMEDLELPLTFVLAQMEMQGVSVDTKRLENMKVELAGRLKTLEESIHSLAGEEFNIN 528 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG ILF KL+ P KTKTG + T A LE + G + II IL +RQL KI+STY Sbjct: 529 SPKQLGVILFEKLELPPVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTY 586 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743 + L +K T +VHT ++ T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P Sbjct: 587 IEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGW 646 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 K+ SADYSQ+ELR+LAHI++ L F++ DIH A ++F V ++V MRR AK Sbjct: 647 KMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKA 706 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R EA D+I RYF +P + EY++ F ++ GYVETI Sbjct: 707 VNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETIL 766 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + EI S ++R ER A+N PIQGSAADI ++AMI + + L+ L K+LLQ Sbjct: 767 HRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLKSENLEAKLLLQ 826 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE PE EI +I+ ME A + L VPLKV+ + W Sbjct: 827 VHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 871 Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 118/309 (38%), Positives = 168/309 (54%), Gaps = 10/309 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S RAFYA PLL+ G+ NA+ GF ML +L+ + SH V Sbjct: 2 NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + YK R K P L Q P +R A+ IP E+ +EADDII T Sbjct: 57 FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 T AE +G V II+ D+DL QL S T +Y T K E E + +K+ + P +++ Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASRKTTVYITKKGIADMETNTPETLKEKYDLTPSQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239 ++ L GDS DNIPGIPG+G KTA LL E+G +E++L +A I KK +E +LE E Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS++L + D PI +E + ++I LK + FT L+ + +A + Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTAEEAKEL 296 Query: 300 EPVVLDINT 308 + + +I T Sbjct: 297 KELSFEIVT 305 >gi|313623618|gb|EFR93782.1| DNA polymerase I [Listeria innocua FSL J1-023] Length = 552 Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust. Identities = 229/552 (41%), Positives = 329/552 (59%), Gaps = 19/552 (3%) Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 FI L+VH+SQ + T E + + + E+E K+ ++ K + ++R G +++G Sbjct: 9 FIGLTVHSSQGTYFFTKETAEKSAVFRDWVESEE-TKVVYDAKKTMVAMNRIGFAIKGVT 67 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541 DIML SY+L+ S D S+A + YT E K K S P + I V H Sbjct: 68 FDIMLASYLLNPSDSIDDFTSVAVRH-DYTEVETDEAIYGKGAKRSTPEEDI----VAAH 122 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 + I +L L L + L + E L+ P+ V++QME+ G+ +D L + E Sbjct: 123 LARKAVAIAELEKRLVDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTQRLGNMKVE 182 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 ++ L +LEE+I+ L+GE+FN++SPKQLG ILF KL+ P KTKTG + T A LE + Sbjct: 183 LAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTG-YSTAADVLESL- 240 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 G + II IL +RQL KI+STY + L +K T +VHT ++ T TGRL+S++PNLQ Sbjct: 241 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 300 Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 NIPI+ + G+KIR+ F+ S P K+ SADYSQ+ELR+LAHI++ L F++ DIH Sbjct: 301 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 360 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A ++F V ++V MRR AK +NF I+YGIS + L+ L I R EA D+I RYF +P Sbjct: 361 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYP 420 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 + EY++ F ++ GYVETI RR + EI S ++R ER A+N PIQGSAADI Sbjct: 421 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 480 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 ++AMI + + L+ L K+LLQ+HDEL+FE PE EI +I+ ME A + L V Sbjct: 481 KKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 536 Query: 961 PLKVNIKVSNNW 972 PLKV+ + W Sbjct: 537 PLKVDSAFGDTW 548 >gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2] gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2] Length = 891 Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust. Identities = 215/545 (39%), Positives = 331/545 (60%), Gaps = 13/545 (2%) Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLM 492 HT D+ + L++ +++ ++ EN K+G NIKYD +VL R+GI M+G D M+ Sbjct: 350 HTGMDAKKQPDLSR-VIALIRPLLENPEVKKVGQNIKYDYIVLTRHGIRMQGLGFDTMIA 408 Query: 493 SYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549 S++L+ + H + IA L + KE+ S K+ I +++ ++A E++++ Sbjct: 409 SHLLNPSQRGHSLDKIAMDLLDHKTIRYKEVTGSGKTQIGFNEVEIQTALDYAAEDADIT 468 Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609 L +L+ KL LL + +++ P+I V++ ME+ GI++D+ L ++S + +++L Sbjct: 469 LLCHGILKQKLQESNLLDLMNQVEMPLITVLADMEMHGIKVDRKKLGELSKTFEQEMMTL 528 Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN--CGDNPI 667 E IY L+GE FN++S +QLG ILF KL+ P+ KTK +T D+E +N + + Sbjct: 529 ETQIYALAGETFNINSSQQLGTILFEKLQLPAKKKTKKKTGYST--DVEVLNELAEHHEL 586 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 + IL +R L K+KSTY+D+L I+ T R+HT ++ A T TGRL+S +PNLQNIPI+T Sbjct: 587 PEKILRYRSLGKLKSTYSDALQELIHPETGRIHTSFNQAITATGRLSSSDPNLQNIPIRT 646 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 + G+ IR AF+ P L++ADYSQIELR+LAH A+ L Q F N DIH AAE+F Sbjct: 647 NEGKMIREAFVPEPGHILVAADYSQIELRLLAHFAEDEILIQSFRNDEDIHTRTAAEVFQ 706 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 E ++ +RR AK INF I+YG+S F+LA ++ + R A YI YF R+ G+ +I+ Sbjct: 707 AFPEFITEDLRRQAKAINFGIMYGMSAFKLAKEINVTRKTAQTYIDSYFARYAGVKRFID 766 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 KT + G V TI GR+ ++IN+ ++R + ERAAIN P+QGSAAD+ + AMI++ Sbjct: 767 KTIEQAKTTGEVTTILGRKRRLNDINASNVNLRKLAERAAINTPVQGSAADLIKLAMINM 826 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 + L+ L ++MLL +HDE++FE P E + ME L+VPLKVNI Sbjct: 827 DRELKKTPLKSRMLLSVHDEIIFETPLAEKEALMDLARQVMEGV----FALKVPLKVNIA 882 Query: 968 VSNNW 972 NW Sbjct: 883 AGINW 887 Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 119/282 (42%), Positives = 175/282 (62%), Gaps = 6/282 (2%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + +++LVDGS+++YRAF+A LS G+P NA GF +L KL++ + E + AV Sbjct: 2 KQNIYLVDGSAYLYRAFHAIRSLSTS-TGIPTNATFGFTRILLKLIKEKQPE----YVAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRN ++ YKANRP +P+ L Q+P ++ +A IP +E GFEADD+I T Sbjct: 57 FFDVKGPTFRNAMFDAYKANRPPMPDDLRLQIPYIKEVVKALNIPIVEKTGFEADDLIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y +AE++GFAV +++ DKD MQLV+ ++D +KEE ID + K G+ P +++ + Sbjct: 117 YARLAEEKGFAVVMVTGDKDFMQLVTDNAVIWDPMKEEIIDKRAISDKLGLTPIQVIDML 176 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-RENILEYAETARL 242 L GD+ DNIPG+PG+G KTA L+ E+GN++ I N +K KK + + + A L Sbjct: 177 GLAGDTADNIPGVPGVGPKTAQKLIAEHGNMKTIYDNLESLKSKKSLYAKLTDNRDQAFL 236 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 SR LV + +V + IPL+ IL + RL K LEFTKL Sbjct: 237 SRDLVTIDRNVAVEIPLDEFILSPFDHGRLAEIFKELEFTKL 278 >gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4] gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4] Length = 868 Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust. Identities = 213/530 (40%), Positives = 331/530 (62%), Gaps = 31/530 (5%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI--SMRGFEDIMLMSYVLDSGRSSHDI 505 E+L + E + L ++ K L YG M GF D++L +Y+++ +++++ Sbjct: 360 EVLKSFFRLLEEKGGLVSTYDAKSCLHALEPYGFKPEMIGF-DVLLAAYLVNPA-ANNEL 417 Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 +IA + + S + +P E + I QL +L+ K+ +++ Sbjct: 418 GAIA-----FEHAGFMLSPGAELP--------------EKAQAIYQLTPILKSKIKLQEQ 458 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 ++Y ++ P+ V++ ME G+++ ++ L+ +S E+ + L L E IY L+GE+FNL+S Sbjct: 459 EYLYYSVELPLAAVLADMEKVGVKVSEERLRSLSKELGEQLAQLSEEIYKLAGERFNLNS 518 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 P+QLG ILF KL KTKTG + T A LE++ ++ I+ +L +RQL+K+KSTY Sbjct: 519 PRQLGYILFEKLGLKPVKKTKTG-YSTDASVLEKL--AEHEIVAKVLVYRQLAKLKSTYT 575 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKK 744 D+LP I+ T R+HT + A T TGRLAS EPNLQNIP++ LG++IR+AF++ P Sbjct: 576 DALPELIDPATGRLHTTFLQAGTATGRLASAEPNLQNIPVRDSLGRRIRQAFVAEGPDYV 635 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L+SADYSQIELR+LAH+++ L + F DIH AAEIFGV+ ++V+P+MR AK + Sbjct: 636 LLSADYSQIELRVLAHLSEDPGLCEAFVKGEDIHARTAAEIFGVSPQEVTPEMRAKAKVV 695 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YG+S + L+ +L+I EA +YI+RYF R+P + ++IE+ R+ GYV TI Sbjct: 696 NFGIVYGMSDYGLSQELKIEPGEAHEYIERYFRRYPRVKQFIERVIAQAREKGYVTTILN 755 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S + R + ER AIN IQGSAAD+ ++AM+ +H+ L+ +M+LQ+ Sbjct: 756 RRRYIPEILSSNRNQRQLGERLAINTTIQGSAADLIKKAMVDIHRQLKGQGFKCRMILQV 815 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL+FEVP+EE+ + II +ME+A LP +VP+K N+KV NWQ+ Sbjct: 816 HDELLFEVPKEELEKVAPIIKSTMEQA-LP---FKVPIKANLKVGPNWQD 861 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 116/292 (39%), Positives = 168/292 (57%), Gaps = 17/292 (5%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K L L+DGSS YRAF+A P L R GLP A+ GF +ML+K+L+ R +I + Sbjct: 2 KGKTLLLLDGSSIAYRAFFALPSL-RTRTGLPTGAVYGFTSMLFKVLEERRPTAIVA--- 57 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 FD TFR+ + YKA+RP P+ L Q L++ A +P +E +GFEADD+I Sbjct: 58 -AFDKSKTTFRHALAETYKAHRPATPDELRQQFNLIKEVLTALNVPVVEKEGFEADDLIG 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIK-KWGIPPEK 178 T AEKEG+ I++ D D +QLVSP T + + E + E +K ++G+ P + Sbjct: 117 TLVDRAEKEGWQCLIVTGDLDALQLVSPLTTVVLMRKGISEIAVFNEAEVKRRFGVTPRQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + +AL GD+ DNIPG+PGIG KTA+ LLQ + +LE +L + + K RE + + E Sbjct: 177 LPDFKALAGDASDNIPGLPGIGPKTASRLLQSHQSLEKLLESKESLP-AKLRETLERHKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA---LEFTKLINR 287 A L++KL ++R DV PLE I+ GP +++ L+ LEF L R Sbjct: 236 EAVLAKKLALIRRDV----PLEEEIIRPWPGPNILATLEVFSRLEFRTLAKR 283 >gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/502 (41%), Positives = 322/502 (64%), Gaps = 22/502 (4%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534 GI +RG D++L +Y+L+ + + D+A++A+ K R + K K S+P Sbjct: 386 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 441 Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 + + EH + + I W L RP +L + + +L++P+ ++++ME TG+++D Sbjct: 442 EPTLAEHLVRKAAAI---WALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P KTKTG + Sbjct: 499 TKRLEQMGSELAEQLGAIEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG-YS 557 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+A LE++ + I++NIL +RQL K++STY + L ++ T +VHT ++ A T TG Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S EPNLQNIPI+ + G+KIR+AF+ S P + +ADYSQIELR+LAHIA L + Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F LDIH A +IF V+ E+V+ MRR AK +NF I+YGIS + LA L I R EAA+ Sbjct: 677 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I+RYF FPG+ Y+E +Q GYV T+ RR ++ +I S ++R+ ER A+N Sbjct: 737 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNT 796 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+ E P+EE+ Q++ ME+ Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 856 Query: 951 ACLPKINLRVPLKVNIKVSNNW 972 A + LRVPLKV+ W Sbjct: 857 A----VELRVPLKVDYHYGPTW 874 Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 128/327 (39%), Positives = 187/327 (57%), Gaps = 15/327 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M+ + L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L R +H Sbjct: 1 MRLKKKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKMLAEER----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R + P L Q PL+R A+ IPA E+ +EADDI Sbjct: 56 LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 I T AE+EGF V +IS D+DL QL SP + D K+ DIE V +K+G+ Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLT 174 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PE++V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +EN+ + Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQ 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 Y + A LS++L +R D P+ + L+ +I E + ++I+ K L F + ++ D Sbjct: 235 YRDLALLSKQLAAIRRDAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAP 290 Query: 296 AANIEPVVLDINTTENKGIAIETEIDR 322 A E ++++ GI E D+ Sbjct: 291 TAEDETPLMEMEFVAADGITDEMLADK 317 >gi|227890554|ref|ZP_04008359.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741] gi|227867492|gb|EEJ74913.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741] Length = 892 Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust. Identities = 213/504 (42%), Positives = 325/504 (64%), Gaps = 16/504 (3%) Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL-KSRKSSIPI 530 L+R G+++ D++L+SY+LD+ +S+D+ +AQ+ Y + ++I K K ++P Sbjct: 394 LNRLGVTLSKINFDLLLVSYLLDNSENSNDLGLLAQQHEYYDVESDEQIYGKGAKHAVPK 453 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 DK + EH + I L L +L + L +Y ++++P+ V++ MEI G+++ Sbjct: 454 DK---EVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSIVLANMEIAGVKV 510 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D + L+ + +E+ + L LE+ IY+ +GE+FNL+SPKQLG ILF KLK P KTKTG + Sbjct: 511 DSNRLETMQSELKERLSELEQEIYNEAGEEFNLNSPKQLGVILFEKLKLPVIKKTKTG-Y 569 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T LEQ+ G +PI+ NIL++RQL+KI+STY + L ++K+ + HT Y+ T T Sbjct: 570 STAVGVLEQLR-GMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGKAHTRYTQTLTST 628 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769 GRL+S++PNLQNIP++ + G+KIR+AF+ S P ++ S+DYSQIELR+LAHI+K + + Sbjct: 629 GRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQE 688 Query: 770 VFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+ +DIH A IF V+ ++V+P MRR AK +NF I+YGIS + L+ + I R +A Sbjct: 689 AFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQA 748 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +I Y F G+ +Y+EK F ++NGYVETIF RR + +I S ++R+ ER A+ Sbjct: 749 KQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAM 808 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 N+PIQGSAADI + AMI++ + L++ L KMLLQ+HDEL+FE P EEI ++ M Sbjct: 809 NSPIQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVM 868 Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972 + A + L VPLKV K W Sbjct: 869 DSA----VKLDVPLKVESKHGQTW 888 Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 124/340 (36%), Positives = 185/340 (54%), Gaps = 23/340 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 ++++N L L+DG+S +RAF+A LSR H+GL NAI GF NML +L Sbjct: 2 VEEKNKLLLIDGNSVTFRAFFALHNSLSRFVNHEGLHTNAIYGFKNMLDSILTKVN---- 57 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR E + DYK R K P L Q P ++ + +GI E++ +EA Sbjct: 58 PTHILVAFDAGKTTFRTEKFTDYKGGRAKTPSELSEQFPEIKNLLEGYGIKTYELKNYEA 117 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T AEK+ + V +++ D+DL QL + + TVK E+ HV +K G Sbjct: 118 DDIIGTLAAKAEKKNYDVVVVTGDRDLTQLTTDKITVAVTVKGVSEIEEYTPSHVEEKIG 177 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 + PE++V ++AL GD+ DN PG+ IG KTA LL++YG L+ I N +K+ K +EN+ Sbjct: 178 LIPEQIVDMKALVGDTSDNYPGVTKIGEKTAIKLLKQYGTLDGIYKNIDEMKKSKMKENL 237 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV--ATT 291 + E A L + L +R D P+ I LE + +LI+ + L+F K ++++ ++ Sbjct: 238 IREKEIAYLCQDLAEIRKDAPVEIDLEETEWTGKDIEKLITLYQKLDFRKFLSQLKDESS 297 Query: 292 YDCD----AANIEPVVL------DINTTENKGIAIETEID 321 D +NIE L DIN ++N I EID Sbjct: 298 EQLDIFESKSNIEFTELTEENLDDINVSDNDEIVFNLEID 337 >gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus] Length = 878 Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/502 (41%), Positives = 322/502 (64%), Gaps = 22/502 (4%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534 GI +RG D++L +Y+L+ + + D+A++A+ K R + K K S+P Sbjct: 386 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 441 Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 + + EH + + I W L RP +L + + +L++P+ ++++ME TG+++D Sbjct: 442 EPTLAEHLVRKAAAI---WALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P KTKTG + Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG-YS 557 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+A LE++ + I++NIL +RQL K++STY + L ++ T +VHT ++ A T TG Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S EPNLQNIPI+ + G+KIR+AF+ S P + +ADYSQIELR+LAHIA L + Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F LDIH A +IF V+ E+V+ MRR AK +NF I+YGIS + LA L I R EAA+ Sbjct: 677 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I+RYF FPG+ Y+E +Q GYV T+ RR ++ +I S ++R+ ER A+N Sbjct: 737 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNT 796 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+ E P+EE+ Q++ ME+ Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 856 Query: 951 ACLPKINLRVPLKVNIKVSNNW 972 A + LRVPLKV+ W Sbjct: 857 A----VELRVPLKVDYHYGPTW 874 Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 127/327 (38%), Positives = 186/327 (56%), Gaps = 15/327 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M+ + L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L R +H Sbjct: 1 MRLKKKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKMLAEER----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R + P L Q PL+R A+ IPA E+ +EADDI Sbjct: 56 LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 I T AE+EGF V +IS D+DL QL SP + D K+ DIE V +K+G+ Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLT 174 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PE++V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +EN+ + Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQ 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 Y + A LS++L +R P+ + L+ +I E + ++I+ K L F + ++ D Sbjct: 235 YRDLALLSKQLAAIRRYAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAP 290 Query: 296 AANIEPVVLDINTTENKGIAIETEIDR 322 A E ++++ GI E D+ Sbjct: 291 TAEDETPLMEMEFVAADGITDEMLADK 317 >gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus] gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/502 (41%), Positives = 322/502 (64%), Gaps = 22/502 (4%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534 GI +RG D++L +Y+L+ + + D+A++A+ K R + K K S+P Sbjct: 386 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 441 Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 + + EH + + I W L RP +L + + +L++P+ ++++ME TG+++D Sbjct: 442 EPTLAEHLVRKAAAI---WALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P KTKTG + Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG-YS 557 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+A LE++ + I++NIL +RQL K++STY + L ++ T +VHT ++ A T TG Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S EPNLQNIPI+ + G+KIR+AF+ S P + +ADYSQIELR+LAHIA L + Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F LDIH A +IF V+ E+V+ MRR AK +NF I+YGIS + LA L I R EAA+ Sbjct: 677 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I+RYF FPG+ Y+E +Q GYV T+ RR ++ +I S ++R+ ER A+N Sbjct: 737 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNT 796 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+ E P+EE+ Q++ ME+ Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 856 Query: 951 ACLPKINLRVPLKVNIKVSNNW 972 A + LRVPLKV+ W Sbjct: 857 A----VELRVPLKVDYHYGPTW 874 Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 128/327 (39%), Positives = 187/327 (57%), Gaps = 15/327 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M+ + L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L R +H Sbjct: 1 MRLKKKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKMLAEER----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R + P L Q PL+R A+ IPA E+ +EADDI Sbjct: 56 LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 I T AE+EGF V +IS D+DL QL SP + D K+ DIE V +K+G+ Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLT 174 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PE++V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +EN+ + Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQ 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 Y + A LS++L +R D P+ + L+ +I E + ++I+ K L F + ++ D Sbjct: 235 YRDLALLSKQLAAIRRDAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAP 290 Query: 296 AANIEPVVLDINTTENKGIAIETEIDR 322 A E ++++ GI E D+ Sbjct: 291 TAEDETPLMEMEFVAADGITDEMLADK 317 >gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB] Length = 878 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/502 (41%), Positives = 322/502 (64%), Gaps = 22/502 (4%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534 GI +RG D++L +Y+L+ + + D+A++A+ K R + K K S+P Sbjct: 386 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 441 Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 + + EH + + I W L RP +L + + +L++P+ ++++ME TG+++D Sbjct: 442 EPTLAEHLVRKAAAI---WALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P KTKTG + Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG-YS 557 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+A LE++ + I++NIL +RQL K++STY + L ++ T +VHT ++ A T TG Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S EPNLQNIPI+ + G+KIR+AF+ S P + +ADYSQIELR+LAHIA L + Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F LDIH A +IF V+ E+V+ MRR AK +NF I+YGIS + LA L I R EAA+ Sbjct: 677 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I+RYF FPG+ Y+E +Q GYV T+ RR ++ +I S ++R+ ER A+N Sbjct: 737 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNT 796 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+ E P+EE+ Q++ ME+ Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 856 Query: 951 ACLPKINLRVPLKVNIKVSNNW 972 A + LRVPLKV+ W Sbjct: 857 A----VELRVPLKVDYHYGPTW 874 Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 128/327 (39%), Positives = 187/327 (57%), Gaps = 15/327 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M+ + L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L R +H Sbjct: 1 MRLKKKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKMLAEER----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R + P L Q PL+R A+ IPA E+ +EADDI Sbjct: 56 LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 I T AE+EGF V +IS D+DL QL SP + D K+ DIE V +K+G+ Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLT 174 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PE++V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +EN+ + Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQ 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 Y + A LS++L +R D P+ + L+ +I E + ++I+ K L F + ++ D Sbjct: 235 YRDLALLSKQLAAIRRDAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAP 290 Query: 296 AANIEPVVLDINTTENKGIAIETEIDR 322 A E ++++ GI E D+ Sbjct: 291 TAEDETPLMEMEFVAADGITDEMLADK 317 >gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] Length = 878 Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/498 (42%), Positives = 317/498 (63%), Gaps = 14/498 (2%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDKISDS 536 G+ +RG + D+++ SY+L+ +S+ D+ASIA+ ++ E + + + K+ D Sbjct: 386 GVHLRGIQFDLLIASYLLNPSQSTEDVASIAKTKQYAGVQSDEAVYGKGAK---QKVPDE 442 Query: 537 QV-QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 QV EH + + I L L + ++ L+ P+ ++++ME G+++D + L Sbjct: 443 QVLAEHLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVDVERL 502 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 K++ E+++ L +E+ IY L+G++FN++SPKQLG ILF KL+ P KTKTG + T+A+ Sbjct: 503 KEMGEELAEQLKEVEQEIYRLAGQEFNINSPKQLGVILFEKLQLPVLKKTKTG-YSTSAE 561 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ + I++ IL +RQL K++STY + L +++ T +VHT ++ A T TGRL+S Sbjct: 562 VLEKL-APQHEIVEKILHYRQLGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGRLSS 620 Query: 716 LEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 EPNLQNIPI+ + G+KIR+AFI S P + SADYSQIELR+LAHIA L F + Sbjct: 621 TEPNLQNIPIRLEEGRKIRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHG 680 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 LDIH A +IF V+ E+V+P MRR AK +NF I+YGIS + L+ L I R EAA++IKR Sbjct: 681 LDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGISDYGLSQNLNITRKEAAEFIKR 740 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF FPG+ +Y++ +Q GYV T+ RR + +I S ++R+ ER A+N PIQG Sbjct: 741 YFEIFPGVKQYMKDIVQEAKQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQG 800 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 SAADI ++AMI + K L+ + +MLLQ+HDEL+ E P++EI QI+ ME A Sbjct: 801 SAADIIKKAMIDLSKRLQKENMKARMLLQVHDELILEAPKDEIERLQQIVPEVMENA--- 857 Query: 955 KINLRVPLKVNIKVSNNW 972 + LRVPLKV+ W Sbjct: 858 -VQLRVPLKVDYHFGPTW 874 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 113/288 (39%), Positives = 170/288 (59%), Gaps = 11/288 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L+ + +H V FD Sbjct: 6 LVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLMKILEEEK----PTHMLVAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ + +YK R K P L Q PL+R A+ I E++ +EADDII T Sbjct: 61 AGKTTFRHKTFEEYKGGRQKTPPELSEQFPLLRELLNAYQIRFYELENYEADDIIGTLCA 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181 AE EGF V +IS D+DL QLVS + D K+ D+E V +K+G+ P++++ Sbjct: 121 KAENEGFEVKVISGDRDLTQLVSDHVTV-DITKKGITDVESYTPETVREKYGLAPQQIID 179 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L+ L GD DNIPG+PGIG KTA LL+E+G++ENIL + +I K +EN+ ++ + A Sbjct: 180 LKGLMGDKSDNIPGVPGIGEKTALKLLKEFGSIENILDSIEQISGNKLKENLEKHRDLAL 239 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 +S++L + D PI + E + + ++I+ K L F L++++A Sbjct: 240 MSKQLATILRDAPIDLSFEDIEYRGYDVDKVIALFKELSFNSLLDKMA 287 >gi|90961464|ref|YP_535380.1| DNA polymerase I [Lactobacillus salivarius UCC118] gi|90820658|gb|ABD99297.1| DNA polymerase I [Lactobacillus salivarius UCC118] Length = 892 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 212/504 (42%), Positives = 325/504 (64%), Gaps = 16/504 (3%) Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL-KSRKSSIPI 530 L+R G+++ D++L+SY+LD+ +S+D+ +AQ+ Y + ++I K K ++P Sbjct: 394 LNRLGVTLSKINFDLLLVSYLLDNSENSNDLGLLAQQHEYYDVESDEQIYGKGAKHAVPE 453 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 DK + EH + I L L +L + L +Y ++++P+ +++ MEI G+++ Sbjct: 454 DK---EVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSIILANMEIAGVKV 510 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D + L+ + +E+ + L LE+ IY+ +GE+FNL+SPKQLG ILF KLK P KTKTG + Sbjct: 511 DSNRLETMQSELKERLSELEQEIYNEAGEEFNLNSPKQLGVILFEKLKLPVIKKTKTG-Y 569 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T LEQ+ G +PI+ NIL++RQL+KI+STY + L ++K+ + HT Y+ T T Sbjct: 570 STAVGVLEQLR-GMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGKAHTRYTQTLTST 628 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769 GRL+S++PNLQNIP++ + G+KIR+AF+ S P ++ S+DYSQIELR+LAHI+K + + Sbjct: 629 GRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQE 688 Query: 770 VFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+ +DIH A IF V+ ++V+P MRR AK +NF I+YGIS + L+ + I R +A Sbjct: 689 AFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQA 748 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +I Y F G+ +Y+EK F ++NGYVETIF RR + +I S ++R+ ER A+ Sbjct: 749 KQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAM 808 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 N+PIQGSAADI + AMI++ + L++ L KMLLQ+HDEL+FE P EEI ++ M Sbjct: 809 NSPIQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDELIFEAPTEEIPLLEDMVPKVM 868 Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972 + A + L VPLKV K W Sbjct: 869 DSA----VKLDVPLKVESKHGQTW 888 Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 183/340 (53%), Gaps = 23/340 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 ++++N L L+DG+S +RAF+A LSR H+GL NAI GF NML +L Sbjct: 2 VEEKNKLLLIDGNSVTFRAFFALHNSLSRFVNHEGLHTNAIYGFKNMLDSILTKVN---- 57 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR E + DYK R K P L Q P ++ + +GI E++ +EA Sbjct: 58 PTHILVAFDAGKTTFRTEKFTDYKGGRAKTPSELSEQFPEIKNLLEGYGIKTYELKNYEA 117 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T AEK+ + V +++ D+DL QL + + TVK E+ HV +K G Sbjct: 118 DDIIGTLAAKAEKKNYDVVVVTGDRDLTQLTTDKITVAVTVKGVSEIEEYTPSHVEEKIG 177 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 + PE++V ++AL GD+ DN PG+ IG KTA LL++YG L+ I N +K+ K +EN+ Sbjct: 178 LIPEQIVDMKALVGDTSDNYPGVTKIGEKTAIKLLKQYGTLDGIYKNIDEMKKSKMKENL 237 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN--RVATT 291 + E A L + L +R D P+ I LE N +L++ + L+F K ++ + ++ Sbjct: 238 IREKEIAYLCQDLAEIRKDAPVEIDLEETEWTGKNIEKLVTLYQKLDFRKFLSQLKAESS 297 Query: 292 YDCD----AANIEPVVL------DINTTENKGIAIETEID 321 D +NIE L DI ++N I EID Sbjct: 298 EQLDIFESKSNIEFTELTEENLNDIKISDNDEIVFNLEID 337 >gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8] gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8] Length = 893 Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust. Identities = 217/615 (35%), Positives = 361/615 (58%), Gaps = 28/615 (4%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-E 425 Y + + + ++ ++KL S + + T ++D F + I++S FK E Sbjct: 297 GYRIVKDLVEFEKLIEKLRESPSFAIDLETSSLDPFDCDIVGISVS---------FKPKE 347 Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MR 484 +I L +Q N KE+L LK+ E+ +G N+K+D VL G+ + Sbjct: 348 AYYIPLHHRNAQ-----NLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVP 402 Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV-----Q 539 + D M+ +Y+L+ ++ +A K+L Y + S P+ S + V Sbjct: 403 PYFDTMIAAYLLEPNEKKFNLDDLALKFLGYKMTSYQELMSFSFPLFGFSFADVPVEKAA 462 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 ++ E++++ +L+ L KL L +V+ +++ P+++V+++ME+ G+ +D + LK++S Sbjct: 463 NYSCEDADITYRLYKTLSLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLS 522 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLE 658 E K L L E IY ++GE FN++SPKQ+ ILF KL P G TKTG + T + LE Sbjct: 523 EEYGKKLEELAEEIYRIAGEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLE 582 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ G++ II ILE+R++ K+KSTY D+LP +N +T R+H ++ T TGRL+S +P Sbjct: 583 EL-AGEHEIIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRLSSSDP 641 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 NLQN+P K++ G++IR+A + P ++SADYSQIELRILAH++ L + FE +D+ Sbjct: 642 NLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDV 701 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H + A+ IF V E+V+ +MRR K +NFSIIYG++P+ L+ +L +P EA I YF Sbjct: 702 HTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMIVNYFV 761 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 +P + +YI++ + ++ GYV T+FGR+ ++ + + + ER AIN PIQG+AA Sbjct: 762 LYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAINTPIQGTAA 821 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AMI + + L++ K+ +KM++Q+HDELVFEVP EE +++ M + Sbjct: 822 DIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPNEEKDALVELVKDRMTNV----VK 877 Query: 958 LRVPLKVNIKVSNNW 972 L VPL+V++ + W Sbjct: 878 LSVPLEVDVTIGKTW 892 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 106/261 (40%), Positives = 156/261 (59%), Gaps = 6/261 (2%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LFL DG++ YRA+YA G+P NA G ML + +++ + AV F Sbjct: 3 RLFLFDGTALAYRAYYALDRSLSTSTGIPTNATYGVARMLVRFIKDHIIVG-KDYVAVAF 61 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR+++ YKA RPK P++L+ QLP ++ +A G+ +E++G+EADDIIAT Sbjct: 62 DKKAATFRHKLLETYKAQRPKTPDLLIQQLPYIKKLVEALGMKVLEVEGYEADDIIATLA 121 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 + I++ DKD++QLV+ ++ VK E D + V +K+G+ P+++ Sbjct: 122 VKGLPLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPQQIPD 181 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L ALTGD IDNIPG+ GIG KTA LL++Y +LE+IL + + QK R+ +L E A Sbjct: 182 LLALTGDEIDNIPGVTGIGEKTAVQLLEKYKDLEDILNHVRELPQKVRK-ALLRDRENAI 240 Query: 242 LSRKLVMLRTDVPITIPLEHL 262 LS+KL +L T+VPI I E L Sbjct: 241 LSKKLAILETNVPIEINWEEL 261 >gi|313618759|gb|EFR90664.1| DNA polymerase I [Listeria innocua FSL S4-378] Length = 552 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 228/552 (41%), Positives = 329/552 (59%), Gaps = 19/552 (3%) Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 FI L+VH+SQ + T E + + E++ K+ ++ K + ++R G +++G Sbjct: 9 FIGLTVHSSQGTYFFTKETAEKSVVFRNWVESDE-TKVVYDAKKTMVAMNRIGFAIKGVT 67 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541 DIML SY+L+ S D S+A + YT E K K S P + I V H Sbjct: 68 FDIMLASYLLNPSDSIDDFTSVAVRH-DYTEVETDEAIYGKGAKRSTPEENI----VAAH 122 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 + I +L L L + L + E L+ P+ V++QME+ G+ +D L+ + E Sbjct: 123 LARKAVAIAELEKRLVDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTKRLENMKVE 182 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 ++ L +LEE+I+ L+GE+FN++SPKQLG ILF KL+ P KTKTG + T A LE + Sbjct: 183 LAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTG-YSTAADVLESL- 240 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 G + II IL +RQL KI+STY + L +K T +VHT ++ T TGRL+S++PNLQ Sbjct: 241 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 300 Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 NIPI+ + G+KIR+ F+ S P K+ SADYSQ+ELR+LAHI++ L F++ DIH Sbjct: 301 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 360 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A ++F V ++V MRR AK +NF I+YGIS + L+ L I R EA D+I RYF +P Sbjct: 361 TAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYP 420 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 + EY++ F ++ GYVETI RR + EI S ++R ER A+N PIQGSAADI Sbjct: 421 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 480 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 ++AMI + + L+ L K+LLQ+HDEL+FE PE EI +I+ ME A + L V Sbjct: 481 KKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 536 Query: 961 PLKVNIKVSNNW 972 PLKV+ + W Sbjct: 537 PLKVDSAFGDTW 548 >gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] Length = 893 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 220/619 (35%), Positives = 368/619 (59%), Gaps = 36/619 (5%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVET 426 Y + + K + ++KL+ + S + + T ++D F+ + + I++S FK +T Sbjct: 297 GYEIVKDHKTFEDLIEKLKEVPSFALDLETSSLDPFNCEIVGISVS---------FKPKT 347 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRG 485 + + +H TL +LS LK+ E+ +G N+KYD VL GIS + Sbjct: 348 AYY-IPLHHRNAQNLDETL---VLSKLKEILEDPSSKIVGQNLKYDYKVLMVKGISPVYP 403 Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRKS--------SIPIDKISD 535 D M+ +Y+L+ ++ ++ K+L Y T + L S S +P+DK ++ Sbjct: 404 HFDTMIAAYLLEPNEKKFNLEDLSLKFLGYKMTSYQELMSFSSPLFGFSFADVPVDKAAN 463 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 ++ E++++ +L+ +L KL +L +V+ R++ P+++V+++ME+ G+ +D + L Sbjct: 464 -----YSCEDADITYRLYKILSMKLHEAELENVFYRIEMPLVNVLARMELNGVYVDTEFL 518 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTA 654 K++S E K L L E IY ++GE FN++SPKQ+ ILF KL P G TKTG++ T Sbjct: 519 KKLSEEYGKKLEELAEKIYQIAGEPFNINSPKQVSKILFEKLGIKPRGKTTKTGEYSTRI 578 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 + LE+I ++ I+ ILE+R++ K+KSTY D+LP +N +T R+H + T TGRL+ Sbjct: 579 EVLEEI-ANEHEIVPLILEYRKIQKLKSTYIDTLPKLVNPKTGRIHASFHQTGTATGRLS 637 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 S +PNLQN+P K++ G++IR+A + P ++SADYSQIELRILAH++ L + FE Sbjct: 638 SSDPNLQNLPTKSEEGKEIRKAIVPQDPDWWIVSADYSQIELRILAHLSGDENLVKAFEE 697 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 +D+H + A+ I+ V E+V+ +MRR K +NFSIIYG++P+ L+ +L IP EA I Sbjct: 698 GIDVHTLTASRIYNVKPEEVNEEMRRVGKMVNFSIIYGVTPYGLSVRLGIPVKEAEKMII 757 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 YF +P + YI++ ++ GYV T+FGR+ ++ + + ++ ER AIN PIQ Sbjct: 758 SYFTLYPKVRSYIQQVVAEAKEKGYVRTLFGRKRDIPQLMARDKNTQSEGERIAINTPIQ 817 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI + AMI + + L + ++M++Q+HDELVFEVP+EE ++ + M Sbjct: 818 GTAADIIKLAMIDIDEELRKRNMKSRMIIQVHDELVFEVPDEEKEELVDLVKNKMTNV-- 875 Query: 954 PKINLRVPLKVNIKVSNNW 972 + L VPL+V+I + +W Sbjct: 876 --VKLSVPLEVDISIGKSW 892 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 118/313 (37%), Positives = 175/313 (55%), Gaps = 13/313 (4%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI---ASHFA 62 LFL DG++ YRA+YA G+P NA+ G ML K + KE I + A Sbjct: 3 RLFLFDGTALAYRAYYALDRSLSTSTGIPTNAVYGVARMLVKFI----KEHIIPEKDYAA 58 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD A TFR+++ YKA RPK P++L+ QLP ++ +A G +E++G+EADDIIA Sbjct: 59 VAFDKKAATFRHKLLEAYKAQRPKTPDLLVQQLPYIKRLIEALGFKVLELEGYEADDIIA 118 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178 T + II+ DKD++QLV+ ++ VK E D + V +++G+ P + Sbjct: 119 TLAVKGCTFFDEIFIITGDKDMLQLVNEKIKVWRIVKGISDLELYDSKKVKERYGVEPHQ 178 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + L ALTGD IDNIPG+ GIG KTA LL +Y NLE+IL +A + Q+ R+ +L E Sbjct: 179 IPDLLALTGDEIDNIPGVTGIGEKTAVQLLGKYRNLEDILEHARELPQRVRK-ALLRDRE 237 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS+KL L T+ P+ + E + + +L+ LK LEF ++ + + + Sbjct: 238 VAILSKKLATLVTNAPVEVDWEEMKYRGYDKRKLLPILKELEFASIMKELQLYEEAEPTG 297 Query: 299 IEPVVLDINTTEN 311 E +V D T E+ Sbjct: 298 YE-IVKDHKTFED 309 >gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731] gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731] Length = 872 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 204/503 (40%), Positives = 314/503 (62%), Gaps = 37/503 (7%) Query: 476 LHRY----GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI 530 L++Y G +++G +D L Y+ + G S + I ++ +++L E + + +P+ Sbjct: 397 LYKYMMGQGKNLQGITDDPALAGYLYEPGASGYGIQALGEEFLPAASGEGAQDTAALVPV 456 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 LR KL L +YE ++ P+ + +++ME TGI + Sbjct: 457 -------------------------LREKLEERGLTRLYEDIELPLTENLAEMEFTGIAV 491 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 DQ +L +V+ E++K + +LE+ +D +GE+FNL+SPKQLG +LF KL P KTKTG + Sbjct: 492 DQAMLDEVTGEMTKKVQALEQQAWDQAGEQFNLNSPKQLGVLLFEKLGLPIIKKTKTG-Y 550 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T LE + G++P+I+ ++ +RQLSK+ STY L IN T R+HT ++ +T+T Sbjct: 551 STDVSVLEALQ-GEHPLIETLISYRQLSKLLSTYLLGLHPLINPATGRIHTHFNQMATVT 609 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQ 769 GRL+S EPNLQNIP +T++G+++R F+ L+ S DYSQ+ELR++A IA+ L Sbjct: 610 GRLSSTEPNLQNIPTRTEVGKRMREMFVPGEGYDLLMSCDYSQVELRVMASIAQDELLLD 669 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F + D+H A+EIFGV +++V+P MR AKT+NF IIYGIS F LA QL +PR EAA Sbjct: 670 SFRHGQDVHARTASEIFGVPLDQVTPYMRSKAKTVNFGIIYGISDFGLARQLGVPRGEAA 729 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 YI+ YF R+ G+ Y+E+ K R+ GYVET+FGRR + +IN+ + R+ ER AIN Sbjct: 730 QYIESYFARYTGVKAYMEREKQKAREMGYVETLFGRRRYLPDINAKNFNRRSFAERTAIN 789 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 PIQG+AADI + AM+ V ++L++ ++ +++LLQ+HDELV E+P E T +I+ +ME Sbjct: 790 TPIQGTAADIIKVAMLKVARNLKEARVKSRVLLQVHDELVLEIPAAEQETVGKIVKETME 849 Query: 950 KACLPKINLRVPLKVNIKVSNNW 972 A ++L VPL ++ V NW Sbjct: 850 HA----VDLAVPLVADVAVGKNW 868 Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 112/314 (35%), Positives = 162/314 (51%), Gaps = 24/314 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + L+DGSS I+RAF+A P L+ K +G+ A+ G CNM+ KLLQ E S+ V Sbjct: 2 DEKFLLIDGSSLIHRAFFALPPLTNK-NGVNTGAVYGLCNMILKLLQ----EIQPSYMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E +P+YK R P L Q PL Q+ GIP +E+ +EADDII T Sbjct: 57 AFDKSRKTFRTEKFPEYKGQRKATPPELKEQFPLSIQLLQSMGIPTLEVDNYEADDIIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT--------VKEEKIDIEHVIKKWGIP 175 + A E V I++ D+D QL+ + T V +EK E G+ Sbjct: 117 LSSGA-PENVQVRIVTGDRDEFQLIKGNVQVLFTKKGISNIAVYDEKAFGEEY---QGLQ 172 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ L+ L GD+ DNIPG+PG+G KTA L+ EY +EN+L +A +K K +E + Sbjct: 173 PRQIIDLKGLMGDTSDNIPGVPGVGPKTALKLITEYRTVENVLDHAEEVKGKALKEKLRN 232 Query: 236 YAETARLSRKLVMLRTDVPITI-PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 E A LS+ L + VPI P +++ R ++ L+F L +R C Sbjct: 233 NREQALLSKDLATICLQVPIDRDPGAYVLTGLTEESR--QLMQELQFKNLWDRFVPVLGC 290 Query: 295 ----DAANIEPVVL 304 DA + +P+ L Sbjct: 291 AAGTDAGSSDPLSL 304 >gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO] gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO] Length = 892 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 223/621 (35%), Positives = 364/621 (58%), Gaps = 33/621 (5%) Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKII---TDTMDAFHSKPIAIAISTLDQKDDTSF 422 D T + KD + E I + + ++ TD++ ++ I +IS + Sbjct: 292 DQKTPYIAVKDNNSLNELFEKIKKSQYFVLDLETDSLSPIDAEIIGFSISLPSK------ 345 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 E+ ++ L+ G N K L+ LK EN+ IG N+KYD VL +GI Sbjct: 346 --ESYYVPLA-----HKNGPNVDKKSALNNLKSILENQSAKIIGQNLKYDYSVLKMHGIE 398 Query: 483 -MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRK---SSIPIDKISD 535 +R D M+ +Y+L+ ++ +A K+L+Y + +E+ K ++ +S Sbjct: 399 PVRPSFDTMIAAYLLNPDEKRFNLDELAMKFLNYKMISFEELFKDTSPLFGAVTFADVSV 458 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 +++ E++++ +L+ +L KL LL V E+++ P+I V+ ME+ G+ ++ D L Sbjct: 459 EDATKYSAEDADITRRLYEILNIKLHEADLLEVLEKIEMPLIPVLVHMELEGVYMNIDYL 518 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 K +S++ + + L + IY+ +GE FNL+SPKQ+ ILF KLK KT TG+ T A Sbjct: 519 KDLSSKYAARMNELSQQIYNHAGEAFNLNSPKQVAHILFDKLKIQPTKKTSTGEPSTRAD 578 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ ++PI++ ILE+R+ KIKSTY D LP ++ T R+H+ + T TGRL+S Sbjct: 579 VLEEL-SEEHPIVRLILEYRKYQKIKSTYLDVLPKLVHPETGRIHSSFHQTGTATGRLSS 637 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTK---KLISADYSQIELRILAHIAKITPLYQVFE 772 +PNLQN+P K + ++IR+A + P + K++SADYSQIELR+LAH++ L + F+ Sbjct: 638 SDPNLQNLPSKQEESREIRKAVV--PQRDSWKILSADYSQIELRVLAHLSNDQNLIEAFK 695 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIH ++ IF V +V+PQMR K +NFS+IYG+SP+ L+ + + +A +I Sbjct: 696 KDEDIHNFTSSRIFQVPENQVTPQMRSIGKMVNFSVIYGVSPYGLSQRTGLSYDQAQKFI 755 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF +P + EY K ++ + +GYV T+FGRR ++ S +S+R ER AIN PI Sbjct: 756 GEYFSLYPSVKEYFAKIVSYAKTHGYVRTMFGRRREVPQLRSKNASVRQEGERIAINTPI 815 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI + AMI+++ ++ +L +KM+LQ+HDELVFEVP+EE+ ++ SME Sbjct: 816 QGTAADIMKLAMINLYDKIKQMRLQSKMILQVHDELVFEVPDEEVEIVKNLVRDSMENV- 874 Query: 953 LPKINLRVPLKVNIKVSNNWQ 973 + L VPLKV++K+S++W+ Sbjct: 875 ---VRLSVPLKVDLKISDSWE 892 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 164/291 (56%), Gaps = 16/291 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LFL DG+ YRA+YA G+P NA G ML + L++ K I + A D Sbjct: 4 LFLFDGTGLAYRAYYALDQSLSTTSGIPTNATYGVLRMLIRFLKDYVK--IGDYTAFAMD 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 T+R+E+ +YKA+RP+ P+ ++ QLP ++ QA GI +E +G EADD+IAT Sbjct: 62 TKTRTYRHELLEEYKAHRPQTPDAMIQQLPYIKRGVQALGIKVLEYEGCEADDVIATLAR 121 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 + EKE + IIS DKD+ QLV+ P+ + D E D + +I+K+ + P K+ Sbjct: 122 MGEKEFEDIFIISGDKDMFQLVNDKIKVWRPSKGITDL---EFYDKKKIIEKYRVEPSKI 178 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA-E 238 V L AL GDS+DN+PG+ GIG KTAA L++++GNL+ I +I + R +L + Sbjct: 179 VDLLALMGDSVDNVPGVKGIGMKTAAELIEKFGNLDEIY---GKIDENSRIGKLLSRGKD 235 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A S++LV L TD+ + + + L L+ FL+ +EF+ ++ + Sbjct: 236 DAFKSKQLVTLMTDLDLRLTWDDLKYAGYKEKELVEFLREMEFSSIMKELG 286 >gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/502 (41%), Positives = 321/502 (63%), Gaps = 22/502 (4%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534 GI +RG D++L +Y+L+ + + D+A++A+ K R + K K S+P Sbjct: 386 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 441 Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 + + EH + + I W L RP +L + + +L++P+ ++++ME TG+++D Sbjct: 442 EPTLAEHLVRKAAAI---WALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P KTKTG + Sbjct: 499 TKRLEQMGSELAEQLGAIEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG-YS 557 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+A LE++ + I++NIL +RQL K++STY + L ++ T +VHT ++ A T TG Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S EPNLQNIPI+ + G+KIR+AF+ S P + +ADYSQIELR+LAHIA L + Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F LDIH A +IF V+ E+V+ MRR AK +NF I+YGIS + LA L I R EAA+ Sbjct: 677 FRRDLDIHAKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I+RYF FPG+ Y+E +Q GYV T+ RR + +I S ++R+ ER A+N Sbjct: 737 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNT 796 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+ E P+EE+ Q++ ME+ Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 856 Query: 951 ACLPKINLRVPLKVNIKVSNNW 972 A + LRVPLKV+ W Sbjct: 857 A----VELRVPLKVDYHYGPTW 874 Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/327 (39%), Positives = 187/327 (57%), Gaps = 15/327 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M+ + L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L R +H Sbjct: 1 MRSKKKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKMLAEER----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R + P L Q PL+R A+ IPA E+ +EADDI Sbjct: 56 LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 I T AE+EGF V +IS D+DL QL SP + D K+ DIE V +K+G+ Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLT 174 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PE++V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +EN+ + Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQ 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 Y + A LS++L +R D P+ + L+ +I E + ++I+ K L F + ++ D Sbjct: 235 YRDLALLSKQLAAIRRDAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAP 290 Query: 296 AANIEPVVLDINTTENKGIAIETEIDR 322 A E ++++ GI E D+ Sbjct: 291 TAEDETPLMEMEFVAADGITDEMLADK 317 >gi|300214316|gb|ADJ78732.1| DNA polymerase I [Lactobacillus salivarius CECT 5713] Length = 892 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 212/504 (42%), Positives = 325/504 (64%), Gaps = 16/504 (3%) Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL-KSRKSSIPI 530 L+R G+++ D++L+SY+LD+ +S+D+ +AQ+ Y + ++I K K ++P Sbjct: 394 LNRLGVTLSKINFDLLLVSYLLDNSENSNDLGLLAQQHEYYDVESDEQIYGKGAKHAVPK 453 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 DK + EH + I L L +L + L +Y ++++P+ V++ MEI G+++ Sbjct: 454 DK---EVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSIVLANMEIAGVKV 510 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D + L+ + +E+ + L LE+ IY+ +GE+FNL+SPKQLG ILF KLK P KTKTG + Sbjct: 511 DSNRLETMQSELKERLSELEQEIYNEAGEEFNLNSPKQLGVILFEKLKLPVIKKTKTG-Y 569 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T LEQ+ G +PI+ NIL++RQL+KI+STY + L ++K+ + HT Y+ T T Sbjct: 570 STAVGVLEQLR-GMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGKAHTRYTQTLTST 628 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769 GRL+S++PNLQNIP++ + G+KIR+AF+ S P ++ S+DYSQIELR+LAHI+K + + Sbjct: 629 GRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQE 688 Query: 770 VFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+ +DIH A IF V+ ++V+P MRR AK +NF I+YGIS + L+ + I R +A Sbjct: 689 AFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQA 748 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +I Y F G+ +Y+EK F ++NGYVETIF RR + +I S ++R+ ER A+ Sbjct: 749 KQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAM 808 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 N+PIQGSAADI + AMI++ + L++ L KMLLQ+HDEL+FE P +EI ++ M Sbjct: 809 NSPIQGSAADIIKVAMINMQEMLKEKNLQAKMLLQVHDELIFEAPTKEIPLLEDMVPKVM 868 Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972 + A + L VPLKV K W Sbjct: 869 DSA----VKLDVPLKVESKHGQTW 888 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 183/340 (53%), Gaps = 23/340 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 ++++N L L+DG+S +RAF+A LSR H+GL NAI GF NML +L Sbjct: 2 VEEKNKLLLIDGNSVTFRAFFALHNSLSRFVNHEGLHTNAIYGFKNMLDSILTKVN---- 57 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR E + DYK R K P L Q P ++ + + I E++ +EA Sbjct: 58 PTHILVAFDAGKTTFRTEKFTDYKGGRAKTPSELSEQFPEIKNLLEGYRIKTYELKNYEA 117 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T AEK+ + V +++ D+DL QL + + TVK E+ HV +K G Sbjct: 118 DDIIGTLAAKAEKKNYDVVVVTGDRDLTQLTTDKITVAVTVKGVSEIEEYTPSHVEEKIG 177 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 + PE++V ++AL GD+ DN PG+ IG KTA LL++YG L+ I N +K+ K +EN+ Sbjct: 178 LIPEQIVDMKALVGDTSDNYPGVTKIGEKTAIKLLKQYGTLDGIYKNIDEMKKSKMKENL 237 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN--RVATT 291 + E A L + L +R D P+ I LE N +L++ + L+F K ++ + ++ Sbjct: 238 IREKEIAYLCQDLAEIRKDAPVEIDLEETEWTGKNIEKLVTLYQKLDFRKFLSQLKAESS 297 Query: 292 YDCD----AANIEPVVL------DINTTENKGIAIETEID 321 D +NIE L DIN ++N I EID Sbjct: 298 EQLDIFESKSNIEFTELTEENLDDINVSDNDEIVFNLEID 337 >gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] Length = 894 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 229/601 (38%), Positives = 351/601 (58%), Gaps = 26/601 (4%) Query: 378 QQWVQKLETIGSASFKII---TDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVH 434 +Q E + AS + TD++D ++ + +++ T +D ++ + D Sbjct: 300 EQLAALAERLAGASLVAVDTETDSLDPLKARLVGVSLCT---EDGEAWYLPCGHRD---E 353 Query: 435 TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH---RYGISMRG-FEDIM 490 + G+ L + ++ +L+ E+ KIGHN+K+D VL GI + D M Sbjct: 354 AGELVAGQLPLDR-LIEFLRPVLEHPGTTKIGHNLKFDLAVLSAPCNGGIQLACPLHDTM 412 Query: 491 LMSYVLDSGRSSHDI----ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 + +++L R ++ + I + SY +E+ + KS ++ + ++ E+ Sbjct: 413 IGAWLLAPDRRTYKLDDLCGEINLRMTSY--EEVTHADKSEDAFCRVPLEAAKNYSCEDV 470 Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 L+L+ P+L LL + ++ P++ V++ ME GI++D D L ++SAE + L Sbjct: 471 YGALRLYQEQLPQLERADLLALLREVEGPLVPVLAAMEREGIRVDADKLARLSAEFDRRL 530 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666 + E +IY +G FN++SPKQLG++LF KL+ P G KTKTG W T + LE ++ D+ Sbjct: 531 RTDELSIYQAAGMSFNINSPKQLGEVLFEKLQLPKGRKTKTG-WSTDVKVLENLSF-DHE 588 Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 + IL++R L+K+KSTY D L + N RT RVHT ++ T TGRL+S PNLQNIPI+ Sbjct: 589 LPALILQYRNLAKLKSTYVDKLASLRNPRTGRVHTSFNQCGTATGRLSSSSPNLQNIPIR 648 Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 T+ G++IR AFI+ L++ADYSQI+LR+LAH ++ L F+ DIHR AAEIF Sbjct: 649 TEEGRRIRSAFIAADGCLLLAADYSQIDLRVLAHYSQDRELIAAFQGGQDIHRRTAAEIF 708 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 V+ E V+ +MRR AKTINF I+YG+S F L++QL + R +A +I RYF F GI +++ Sbjct: 709 NVSPELVTAEMRRVAKTINFGIVYGMSSFGLSSQLHVSRKDAQLFIDRYFAHFSGIKDFM 768 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 T +++G+V T+ GRR EINS R ER AIN PIQG+AADI + AM+ Sbjct: 769 ASTIQQAKKDGFVTTLLGRRRPLAEINSANRVQREFAERTAINTPIQGTAADIIKLAMLR 828 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 +H+ L +MLLQIHDELV EVPE E+ S+++ SME A + LRVPL V + Sbjct: 829 IHRELLRRDFRARMLLQIHDELVLEVPETELDPVSRLLKDSMESA----MPLRVPLVVQL 884 Query: 967 K 967 + Sbjct: 885 R 885 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 105/245 (42%), Positives = 153/245 (62%), Gaps = 5/245 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+DGS++IYRA++A LS H GLP +AI GF +L +L+ KE + AV FD Sbjct: 6 LYLIDGSAYIYRAYHAIKPLSNSH-GLPTHAIFGFTAILRRLI----KERNPRYLAVAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+ +Y YKANRP +PE L+PQ+P +R A+ I +E + EADD+IA+ Sbjct: 61 TKGPVFRHRLYGQYKANRPPMPEDLIPQIPYIRKMVAAYRILNLEHEDQEADDLIASVAK 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +G+ V I+S DKDL+QLVSP L+D + + +D V +K+G+PP ++ ALT Sbjct: 121 KMAGQGYRVVIVSGDKDLLQLVSPGITLWDPMNDRVMDEAAVEEKYGLPPSLLLDYFALT 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPG+PG+G K+A L+ E+ +LE + + +K K + I + + A LSR+L Sbjct: 181 GDSSDNIPGVPGVGPKSAQKLIAEHRSLEGLYAVVASLKPSKIIQQIRDNRDAAFLSREL 240 Query: 247 VMLRT 251 V L T Sbjct: 241 VRLNT 245 >gi|239828008|ref|YP_002950632.1| DNA polymerase I [Geobacillus sp. WCH70] gi|239808301|gb|ACS25366.1| DNA polymerase I [Geobacillus sp. WCH70] Length = 878 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/499 (42%), Positives = 316/499 (63%), Gaps = 16/499 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEIL--KSRKSSIPIDKIS 534 GI +RG + D+++ SY+L+ +S+ D+ASIA+ ++ E + K K IP + + Sbjct: 386 GIQLRGVQFDLLIASYLLNPSQSTEDVASIAKTKQYTDVQSDEAIYGKGAKQKIPDEPV- 444 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + EH + + I L L + ++ L+ P+ ++++ME TG++ID Sbjct: 445 ---LAEHLVRKAAAIRALEQDFICDLQENEQYSLFTDLELPLSSILAEMEFTGVKIDVKR 501 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 LK++ E+++ L +E+ IY+L+G++FN++SPKQLG ILF KL+ P KTKTG + T+A Sbjct: 502 LKEMGEELTEQLKEIEQEIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTG-YSTSA 560 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 + LE++ + I++ IL +RQL K++STY + L ++ T +VHT ++ A T TGRL+ Sbjct: 561 EVLEKL-APQHEIVEKILHYRQLGKLQSTYIEGLLKVVHHDTNKVHTIFNQALTQTGRLS 619 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 S EPNLQNIPI+ + G+KIR+AF+ S P + SADYSQIELR+LAHIA L F + Sbjct: 620 STEPNLQNIPIRLEEGRKIRQAFVPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRH 679 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 LDIH A +IF VN ++V+P MRR AK +NF I+YGIS + L+ L I R EA+++IK Sbjct: 680 DLDIHTKTAMDIFHVNEDEVTPNMRRQAKAVNFGIVYGISDYGLSQNLNITRKEASEFIK 739 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 RYF FPG+ +Y++ +Q GYV T+ RR + +I S ++R+ ER A+N PIQ Sbjct: 740 RYFEIFPGVKQYMKDIVQEAKQKGYVTTLLHRRRYLPDITSRNFNLRSFAERTAMNTPIQ 799 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 GSAADI ++AMI + L+ + +MLLQ+HDEL+ E P+EE+ QI+ ME A Sbjct: 800 GSAADIIKKAMIDLSNRLKKENMKARMLLQVHDELILEAPKEEVERLQQIVPEVMENA-- 857 Query: 954 PKINLRVPLKVNIKVSNNW 972 + LRVPLKV+ W Sbjct: 858 --VQLRVPLKVDYHFGPTW 874 Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 114/289 (39%), Positives = 169/289 (58%), Gaps = 11/289 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L+ + +H V FD Sbjct: 5 LVLIDGNSIAYRAFFALPLL-HNDKGIHTNAVYGFTMMLMKILEEEK----PTHMLVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ + +YK R + P L Q PL+R A+ I E++ +EADDII T Sbjct: 60 AGKTTFRHKTFEEYKGGRQQTPPELSEQFPLLRELLDAYRIRFYELENYEADDIIGTLCT 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181 AEKEGF V +IS D+DL QL S + D K+ D+E V +K+G+ PE+++ Sbjct: 120 KAEKEGFEVKVISGDRDLTQLASDHVTV-DITKKGITDVESYTPETVQEKYGLTPEQIID 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L+ L GD DNIPG+PGIG KTA LL+E+G +ENIL + ++ K REN+ +Y + A Sbjct: 179 LKGLMGDKSDNIPGVPGIGEKTALKLLKEFGTIENILDSIEQVSGNKLRENLAKYRDIAL 238 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 +S++L + D P+ + LE + + ++I+ K L F L+ ++A Sbjct: 239 MSKQLATILRDAPVDLSLEDIEYNGYDVDKVIALFKELGFNSLLEKMAA 287 >gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] Length = 880 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 229/567 (40%), Positives = 340/567 (59%), Gaps = 43/567 (7%) Query: 429 IDLSVHTSQDSTGKNTLTKEIL---------SY----------LKKFFENEHFLKIGHNI 469 I S+ ++DS +N EIL SY LK+ E+E K+ N Sbjct: 326 IAFSLKIAKDSCARNGKITEILYAFQDESVYSYKTENNKIADALKEILESETIEKLFINA 385 Query: 470 KYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528 K L L GI ++ + +L Y+L S D+ I + L +E Sbjct: 386 KESSLALLCAGIEVKNISFEPLLAYYLLQPSSSLPDLEEIFSRELDIGMQEF-------- 437 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 SQ Q A+E + +L +L KL + L +++ ++ P+I V++QME G+ Sbjct: 438 -------SQDQILAVETIK-LFKLRDILIKKLKDDSLYDLFKNMELPLIKVLAQMEYNGV 489 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +ID+D L+Q+S ++ K L + + ++L+GE FNL+SPKQLG+ILF KL P +TKTG Sbjct: 490 KIDKDWLQQLSDKLEKRLEIITKKAHELAGEDFNLNSPKQLGEILFEKLGLPVIKRTKTG 549 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T A LE++ G +PII I E+R+L+K+KSTY DSLP IN T ++HT ++ T Sbjct: 550 -YSTNANVLEKLE-GKHPIIPLISEYRELAKLKSTYIDSLPPLINSETGKIHTSFNQMVT 607 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPL 767 TGRL+S PNLQNIPI+T+ G++IR+AFI S L++ DYSQIELR+ AH++ L Sbjct: 608 ATGRLSSTNPNLQNIPIRTEEGREIRKAFIPSSDNMILLAVDYSQIELRVFAHLSGDKRL 667 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F + DIH A+EIF V E+VSP +RRHAK INF + YG+S + L+ L IP E Sbjct: 668 KEAFNSGRDIHTETASEIFEVEAEQVSPNLRRHAKVINFGLAYGMSAYGLSQDLDIPVEE 727 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A DYI +YF RF G+ +Y+++T V++ GY ET++GR+ + EINS R+ ER+A Sbjct: 728 AQDYIDKYFERFSGVKKYMDETIQKVKEKGYAETLYGRKRYIPEINSSNYHRRSFAERSA 787 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 IN P+QG+AADI +++M+ V+ SL+D L +LLQ+HDELVFEV +++ A+ +I Sbjct: 788 INTPVQGTAADIMKKSMLDVYDSLKDIDLEINILLQVHDELVFEVANKDLEKAALLIKDK 847 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A L VPL V+++++ NW++ Sbjct: 848 MEAAA----ELDVPLLVDLQIAENWRD 870 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 192/342 (56%), Gaps = 21/342 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LFL+DG S +RAFYA PLL+ DG NA+ GF ML+ L E V FD Sbjct: 12 LFLLDGHSITHRAFYALPLLTN-DDGQYTNAVFGFIRMLFSLTD----EWNPDRMIVTFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+E Y +YKANR K+PE L+PQ+ L++ IP I +G+EADD++ T + Sbjct: 67 KKAPTFRHEEYEEYKANRKKMPEELVPQISLLQQTLAKLEIPIIAEEGYEADDLLGTLSK 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPEKMVCL 182 A + + V II+ D+D +QLVS + T K D+E + K+ IPPEK++ + Sbjct: 127 QAAAQNYDVYIITGDRDALQLVSENIKVMYTRKGLSDLVIYDLEKIFDKYEIPPEKLIDM 186 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GDS DNIPG+PGIG KTA LL+++ +++ IL N ++ KKR+EN+ ++ + A++ Sbjct: 187 KGLMGDSSDNIPGVPGIGEKTAIKLLKQFDSIDEILNNIDQVSGKKRKENLKKFTDQAKM 246 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S +L ++ DVP+ + + L+ + +++ K L F+ L++R + NI Sbjct: 247 SYRLAKIKRDVPLKLDFDKCRLDLYDDGQVVEHFKKLGFSSLLDRFEYKKEIQPENIN-- 304 Query: 303 VLDINTT----------ENKGIAIETEIDRDTTIKTSQFSSL 334 L++ T E K IA +I +D+ + + + + Sbjct: 305 FLNVGETELEELKQKALEYKEIAFSLKIAKDSCARNGKITEI 346 >gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005] Length = 876 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 211/502 (42%), Positives = 321/502 (63%), Gaps = 22/502 (4%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534 GI +RG D++L +Y+L+ + + D+A++A+ K R + K K S+P Sbjct: 384 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 439 Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 + + EH + + I W L RP +L + + +L++P+ ++++ME TGI++D Sbjct: 440 EPTLAEHLVRKAAAI---WALERPFLDELRSNEQDGLLIKLEQPLATILAEMEFTGIKVD 496 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P KTKTG + Sbjct: 497 TKRLEQMGSELAEQLRAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG-YS 555 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+A LE++ + I++NIL +RQL K++STY + L ++ T +VHT ++ A T TG Sbjct: 556 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHPDTGKVHTMFNQALTQTG 614 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S EPNLQNIPI+ + G+KIR+AF+ S P + +ADYSQIELR+LAHIA L + Sbjct: 615 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEA 674 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F LDIH A +IF V+ E+V+ MRR AK +NF I+YGIS + LA L I R EAA+ Sbjct: 675 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 734 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I+RYF FPG+ Y+E +Q GYV T+ RR + +I S ++R+ ER A+N Sbjct: 735 FIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNT 794 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+ E P+EE+ Q++ ME+ Sbjct: 795 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEVMEQ 854 Query: 951 ACLPKINLRVPLKVNIKVSNNW 972 A + LRVPLKV+ W Sbjct: 855 A----VALRVPLKVDYHYGPTW 872 Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/323 (39%), Positives = 185/323 (57%), Gaps = 15/323 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L R +H V Sbjct: 3 NKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKILAEER----PTHLLVA 57 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E + +YK R + P L Q PL+R A+ IPA E+ +EADDII T Sbjct: 58 FDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDIIGTL 117 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKM 179 AE+EGF V +IS D+DL QL SP + D K+ DIE V +K+G+ PE+M Sbjct: 118 AARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLTPEQM 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +EN+ +Y + Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQYRDL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS++L +R D P+ + L+ +I E + ++I+ K L F + ++ D A Sbjct: 237 ALLSKQLAAIRRDAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAPTAED 292 Query: 300 EPVVLDINTTENKGIAIETEIDR 322 E ++++ GI E D+ Sbjct: 293 ETPLMEMEFVIADGITDEMLADK 315 >gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium] Length = 942 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 213/531 (40%), Positives = 331/531 (62%), Gaps = 15/531 (2%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG--FEDIMLMSYVLDSGRSSHDIAS 507 ++ + FE++ IG NIKYD VL YGI ++ F+ ++ ++ R + DI Sbjct: 415 INAFRSLFEDDTKTLIGQNIKYDFQVLKNYGIEIKNKLFDTMVAHFLIMPEMRHNMDI-- 472 Query: 508 IAQKWLSYT----RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 +AQ +L+Y+ I K K + + +++E+A E+++V QL PKLI Sbjct: 473 LAQTYLNYSPVSIETLIGKKGKEQTSMRDVEIEKIKEYAAEDADVTFQLKTAFAPKLIEN 532 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 ++ ++ ++ P+I V++ +E GI +D LK+ S ++ +++ +E+ I D +G KFN+ Sbjct: 533 EVEKLFTEVEVPLIKVLANIEREGINLDVPALKEFSGQLQNDIIIVEKEIQDFAGTKFNV 592 Query: 624 SSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 SSPKQ+G+ILF LK KTKTGQ+ T L ++ +PI+ IL++R+L K+K+ Sbjct: 593 SSPKQVGEILFDYLKIVDKPKKTKTGQYATGEDVLSKLENA-HPIVSKILDYRELVKLKN 651 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D+LP +N++T+R+HT ++ +TGRL+S PNLQNIPI+T+ G++IR+AFI + Sbjct: 652 TYVDTLPELVNEKTKRIHTSFNQVVAVTGRLSSDNPNLQNIPIRTERGRQIRKAFIPRDS 711 Query: 743 KK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 L+SADYSQIELRI+A I+ + + F+ DIH AA++FGV V+ +MR + Sbjct: 712 DHVLLSADYSQIELRIVASISGDKNMCEAFQLGKDIHTATAAKVFGVAEADVTKEMRYKS 771 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K++NF IIYG F L+ L I R+EA + I YF + I Y+++T NF R+NGYV+T Sbjct: 772 KSVNFGIIYGQGAFGLSENLNISRTEAKELIDNYFKEYGAIKSYMDRTINFARENGYVKT 831 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 + GR+ +I S +++R+ ER AINAPIQGSAAD+ + AMI+++ LE TKML Sbjct: 832 LLGRKRWLRDITSANATVRSYAERNAINAPIQGSAADMIKVAMINIYNELEKQNFKTKML 891 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LQ+HDELVF+V + E+ II M +A LP L VP++V + +NW Sbjct: 892 LQVHDELVFDVYKPELEKVKPIIEKLMREA-LP---LDVPVEVGLGTGDNW 938 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 105/295 (35%), Positives = 164/295 (55%), Gaps = 15/295 (5%) Query: 2 QKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 Q + LFL+D + IYRA++A P ++ K G +AI GF N L ++L + Sbjct: 5 QTDKKLFLLDAFALIYRAYFAFSSNPRINSK--GFNTSAIFGFTNTLLEILTKEK----P 58 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 SH AV+FD T R+ + YKANR ++PE L +P++ + F I + ++G+EAD Sbjct: 59 SHIAVVFDMEGPTQRHIEFETYKANREEMPEDLRKSIPIIIEMIKGFNIEVLGLEGYEAD 118 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGI 174 D+I T AEK GF +++ DKD QLV T +Y + E + E + KKW I Sbjct: 119 DVIGTLAIKAEKAGFTTYMMTPDKDYGQLVDENTFIYKPARLGNGAEILGTEEICKKWEI 178 Query: 175 PP-EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 +++ + L GD +DNIPGIPG+G KTA L++++G++EN+L N ++K K +E + Sbjct: 179 RNVAELIDILGLMGDKVDNIPGIPGVGEKTAIQLIKDFGSIENLLENTDKLK-GKLKEKV 237 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A S++L + D PI + E L + + N P L+ + LEF + +V Sbjct: 238 ENNKEMAIQSKRLATIILDCPIELDEEKLTIREPNKPLLLEVFRELEFRAIAQKV 292 >gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2] gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2] Length = 893 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 219/615 (35%), Positives = 365/615 (59%), Gaps = 28/615 (4%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-E 425 Y + + + ++ ++KL S + + T ++D F + I++S FK E Sbjct: 297 GYRIVKDLVEFEKLIEKLRESPSFAIDLETSSLDPFDCDIVGISVS---------FKPKE 347 Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MR 484 +I L +Q N KE+L LK+ E+ +G N+K+D VL G+ + Sbjct: 348 AYYIPLHHRNAQ-----NLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVP 402 Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRKSSIPIDKISDSQVQE-- 540 D M+ +Y+L+ ++ +A K+L Y T + L S S + +D V++ Sbjct: 403 PHFDTMIAAYLLEPNEKKFNLDDLALKFLGYKMTSYQELMSFSSPLFGFSFADVPVEKAA 462 Query: 541 -HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 ++ E++++ +L+ +L KL L +V+ +++ P++ V+++ME+ G+ +D + LK++S Sbjct: 463 NYSCEDADITYRLYKILSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLS 522 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLE 658 E K L L E IY ++GE FN++SPKQ+ ILF KL P G TKTG + T + LE Sbjct: 523 EEYGKKLEELAEEIYRIAGEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLE 582 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ G++ II ILE+R++ K+KSTY D+LP +N +T R+H ++ T TGRL+S +P Sbjct: 583 EL-AGEHEIIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRLSSSDP 641 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 NLQN+P K++ G++IR+A + P ++SADYSQIELRILAH++ L + FE +D+ Sbjct: 642 NLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEEGIDV 701 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H + A+ IF V E+V+ +MRR K +NFSIIYG++P+ L+ +L +P EA I YF Sbjct: 702 HTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMIVNYFV 761 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 +P + +YI++ + ++ GYV T+FGR+ ++ + + + ER AIN PIQG+AA Sbjct: 762 LYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAINTPIQGTAA 821 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AMI + + L++ K+ +KM++Q+HDELVFEVP+EE +++ M + Sbjct: 822 DIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPDEEKDALVELVKDRMTNV----VK 877 Query: 958 LRVPLKVNIKVSNNW 972 L VPL+V++ + W Sbjct: 878 LSVPLEVDVTIGKTW 892 Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 106/261 (40%), Positives = 156/261 (59%), Gaps = 6/261 (2%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LFL DG++ YRA+YA G+P NA G ML + +++ + AV F Sbjct: 3 RLFLFDGTALAYRAYYALDRSLSTSTGIPTNATYGVARMLVRFIKDHIIVG-KDYVAVAF 61 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR+++ YKA RPK P++L+ QLP ++ +A G+ +E++G+EADDIIAT Sbjct: 62 DKKAATFRHKLLETYKAQRPKTPDLLIQQLPYIKKLVEALGMKVLEVEGYEADDIIATLA 121 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 + I++ DKD++QLV+ ++ VK E D + V +K+G+ P+++ Sbjct: 122 VKGLPLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPQQIPD 181 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L ALTGD IDNIPG+ GIG KTA LL++Y +LE+IL + + QK R+ +L E A Sbjct: 182 LLALTGDEIDNIPGVTGIGEKTAVQLLEKYKDLEDILNHVRELPQKVRK-ALLRDRENAI 240 Query: 242 LSRKLVMLRTDVPITIPLEHL 262 LS+KL +L T+VPI I E L Sbjct: 241 LSKKLAILETNVPIEINWEEL 261 >gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] Length = 874 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/510 (39%), Positives = 315/510 (61%), Gaps = 25/510 (4%) Query: 465 IGHNIKYDKLVLHRYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 +GH++K L+ GI F D L +Y+LD RSS+D+A + ++ Sbjct: 376 VGHDLKPLYNWLYSQGIEPPAPAF-DTALAAYLLDPSRSSYDLADLCRQH---------- 424 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + ++ + ++V+ +L + +L + + +Y ++ P++ ++++ Sbjct: 425 ------GLGELPPGDTPDLWATRASVLPELHRRMEAELAAQGVDRLYREVELPLMPILAE 478 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME G+ ID L ++S E+ + +L + + IY+L+G +FN+SSPKQLGD+LF KL PSG Sbjct: 479 MEAVGVGIDPAALHEMSVELERRILQVSQEIYELAGMQFNISSPKQLGDVLFGKLGLPSG 538 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTK+G + T A+ LE++ PI +L++R L+K+K TY D+L + R R+HT Sbjct: 539 KKTKSGGYSTDAEVLEELAAA-YPIAARVLDYRTLTKLKGTYVDAL-GQLIARDGRIHTT 596 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 ++ TGRL+S +PNLQNIPI+ + G++IR+AF++ P L+SADYSQIELR++AH + Sbjct: 597 FAQTVAETGRLSSKDPNLQNIPIRIEEGRRIRKAFVARPGCVLLSADYSQIELRVVAHFS 656 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 L + F + DIH AAE+FGV +++V+P+MRR AK +NF +IYG + F LA + Sbjct: 657 GDPALREAFLHDQDIHTRTAAEVFGVPMDQVTPEMRRQAKAVNFGLIYGQTDFGLARSVG 716 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 I R+EA +I+ YF +F G+ Y+E+ K R+ GYV T+ GRR EIN +IR Sbjct: 717 ISRAEARAFIETYFAKFAGVRRYMEEKKAEAREKGYVTTLDGRRRPLPEINHRVFTIRQN 776 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER AIN PIQG+AAD+ +RAMI+V +++ + L+ +M+LQ+HDELVFE P E+ ++ Sbjct: 777 AERMAINTPIQGTAADLMKRAMIAVRRAMREEGLSARMILQVHDELVFECPVGEVDRLAR 836 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ ME A + L VPLKV +KV +W Sbjct: 837 LVRREMEGA----MKLDVPLKVEVKVGPDW 862 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 113/295 (38%), Positives = 160/295 (54%), Gaps = 16/295 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M K L L+DG+S RAFYA L S DG+ NA+ GF ML+KLL + + + Sbjct: 1 MPKPEKLLLLDGNSLANRAFYALRLFS-TSDGVYTNAVYGFLTMLFKLLDEEQPD----Y 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV FD TFR +Y DYKA R P+ PQL L+R A IP ++ +EADDI Sbjct: 56 VAVAFDKGRQTFRTALYEDYKATRKAPPDEFRPQLDLLREVLTALNIPWFRVENYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176 + T A EG I++ D+D +QL+S + T K + D E + ++G+ P Sbjct: 116 MGTLARQAAAEGLHTLIVTGDRDALQLISDRVTVVMTKKGITETVRYDPETLKAEYGLTP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENI 233 +++ L+AL GD+ DNIPG+PG+G KTA LL +YG ++ + + IK Q K REN Sbjct: 176 SQIIDLKALMGDASDNIPGVPGVGEKTALKLLADYGTVDGVYAHLDEIKGALQAKLREN- 234 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + A LSR L + D P+T E L + N P+ + + LEF L++RV Sbjct: 235 ---RDKAELSRTLATINLDAPVTFDREALRRREPNYPQAYALFQRLEFKSLLSRV 286 >gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] Length = 878 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 209/502 (41%), Positives = 322/502 (64%), Gaps = 22/502 (4%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEIL--KSRKSSIPIDKIS 534 GI +RG D++L +Y+L+ + + DIA++A+ ++ + E + K K S+P Sbjct: 386 GIELRGVAFDLLLAAYLLNPAQDAGDIAAVAKMKQYEAVRSDEAVYGKGVKRSLP----D 441 Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 + + EH + + I W L +P L + + +L++P+ ++++ME TG+ +D Sbjct: 442 EQTLAEHLVRKAAAI---WALEQPFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 498 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P KTKTG + Sbjct: 499 TKRLEQMGSELAEQLRAIEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTG-YS 557 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+A LE++ + I++NIL +RQL K++STY + L + T +VHT ++ A T TG Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFNQALTQTG 616 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S EPNLQNIPI+ + G+KIR+AF+ S P + +ADYSQIELR+LAHIA L + Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEA 676 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+ LDIH A +IF V+ E+V+ MRR AK +NF I+YGIS + LA L I R EAA+ Sbjct: 677 FQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I+RYF FPG+ +Y+E +Q GYV T+ RR + +I S ++R+ ER A+N Sbjct: 737 FIERYFASFPGVKQYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNT 796 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+ E P+EEI +++ ME+ Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQ 856 Query: 951 ACLPKINLRVPLKVNIKVSNNW 972 A + LRVPLKV+ W Sbjct: 857 A----VTLRVPLKVDYHYGPTW 874 Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/295 (40%), Positives = 175/295 (59%), Gaps = 11/295 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M+ + L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L E +H Sbjct: 1 MRLKKKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEQPTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R + P L Q PL+R +A+ IPA E+ +EADDI Sbjct: 56 LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 I T AE+EGF V IIS D+DL QL S + D K+ DIE V +K+G+ Sbjct: 116 IGTLAARAEQEGFEVKIISGDRDLTQLASRHVTV-DITKKGITDIEPYTPETVREKYGLT 174 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PE++V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + +K +K +EN+ + Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEVKGEKLKENLRQ 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 + + A LS++L + D P+ + L+ ++ E + ++I+ K L F + ++A Sbjct: 235 HRDLALLSKQLASICRDAPVELSLDDIVYEGQDREKVIALFKELGFQSFLEKMAA 289 >gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16] gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus] gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16] Length = 876 Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust. Identities = 209/502 (41%), Positives = 322/502 (64%), Gaps = 22/502 (4%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEIL--KSRKSSIPIDKIS 534 GI +RG D++L +Y+L+ + + DIA++A+ ++ + E + K K S+P Sbjct: 384 GIELRGVAFDLLLAAYLLNPAQDAGDIAAVAKMKQYEAVRSDEAVYGKGVKRSLP----D 439 Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 + + EH + + I W L +P L + + +L++P+ ++++ME TG+ +D Sbjct: 440 EQTLAEHLVRKAAAI---WALEQPFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 496 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P KTKTG + Sbjct: 497 TKRLEQMGSELAEQLRAIEQRIYELAGQEFNINSPKQLGVILFEKLQLPVLKKTKTG-YS 555 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+A LE++ + I++NIL +RQL K++STY + L + T +VHT ++ A T TG Sbjct: 556 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFNQALTQTG 614 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S EPNLQNIPI+ + G+KIR+AF+ S P + +ADYSQIELR+LAHIA L + Sbjct: 615 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEA 674 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+ LDIH A +IF V+ E+V+ MRR AK +NF I+YGIS + LA L I R EAA+ Sbjct: 675 FQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 734 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I+RYF FPG+ +Y+E +Q GYV T+ RR + +I S ++R+ ER A+N Sbjct: 735 FIERYFASFPGVKQYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNT 794 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+ E P+EEI +++ ME+ Sbjct: 795 PIQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQ 854 Query: 951 ACLPKINLRVPLKVNIKVSNNW 972 A + LRVPLKV+ W Sbjct: 855 A----VTLRVPLKVDYHYGPTW 872 Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 117/289 (40%), Positives = 172/289 (59%), Gaps = 11/289 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L E +H V FD Sbjct: 5 LVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEQPTHLLVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E + +YK R + P L Q PL+R +A+ IPA E+ +EADDII T Sbjct: 60 AGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGTLAA 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181 AE+EGF V IIS D+DL QL S + D K+ DIE V +K+G+ PE++V Sbjct: 120 RAEQEGFEVKIISGDRDLTQLASRHVTV-DITKKGITDIEPYTPETVREKYGLTPEQIVD 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + +K +K +EN+ ++ + A Sbjct: 179 LKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEVKGEKLKENLRQHRDLAL 238 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 LS++L + D P+ + L+ ++ E + ++I+ K L F + ++A Sbjct: 239 LSKQLASICRDAPVELSLDDIVYEGQDREKVIALFKELGFQSFLEKMAA 287 >gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] Length = 882 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 214/527 (40%), Positives = 322/527 (61%), Gaps = 25/527 (4%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI 508 L+ L+ EN K H+ K +LH +GI ++ D M+ +Y+L+ S +D+ + Sbjct: 375 LTVLQALCENSEIKKYFHDAKSALWMLHHHGIELKSLAFDTMVAAYLLNPTASGYDLIDL 434 Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 A + L +P++ +V A ++ IL+L L KL +++ + Sbjct: 435 ALEHLGIV-----------LPVN----GEVSLAA--KADAILKLAGELVKKLHLQEEDRL 477 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 Y ++ P++ V++ ME+ G+ +D+ LK++SAE+ + SL I+ L+GE FN++SPKQ Sbjct: 478 YFEVELPLVQVLADMEMAGVTVDKQGLKEMSAELHDMIESLAHRIHTLAGEDFNINSPKQ 537 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LG ILF KLK P KTKTG + T A+ LE++ ++ I+ ILE+RQL+K+KSTY D L Sbjct: 538 LGHILFEKLKLPVYKKTKTG-YSTDAEVLEKL-AEEHEIVALILEYRQLAKLKSTYTDGL 595 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-S 747 ++ +T R+H+ + T TGRL+S EPNLQNIPI+ + G++IR+ F+ LI + Sbjct: 596 AALVDPQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLESGRRIRKVFVPRQKGNLILT 655 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIELR+LAH+++ + F DIH AAE+FGV +E+V+P MR AK +NF Sbjct: 656 ADYSQIELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFGVPMEEVTPDMRSRAKAVNFG 715 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 I+YGIS F LA L++ R EA YI YF R PG+ +YI++ + GYV T+ RR Sbjct: 716 IVYGISDFGLARDLKVSRREAKSYIDNYFARCPGVKDYIDRVIKEAKHTGYVTTLLNRRR 775 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + ++ SP + R+ ERAA+N PIQGSAADI + AM+ V + L + L K++LQ+HDE Sbjct: 776 YLPDLFSPNYNARSFGERAAMNTPIQGSAADIIKLAMVRVARELRERNLQAKLVLQVHDE 835 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+F+VPE E+ ++ ME A LP L VPL V++K+ NW E Sbjct: 836 LIFDVPESEVNELVDLVRDCMENA-LP---LDVPLVVDVKLGPNWYE 878 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 120/287 (41%), Positives = 168/287 (58%), Gaps = 12/287 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DG+S ++RAF+A PLLS G+ NA GF NML K+LQ E AV FD Sbjct: 6 LLVIDGNSLVHRAFHALPLLSNSK-GVITNAAYGFTNMLLKVLQ----EVEPGFVAVAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 VTFRNE Y DYK +R P+ L PQ +VR +A IP E+ G+EADD+I T T Sbjct: 61 KGKVTFRNEAYADYKGHRQATPDELRPQFVIVRDILKAMRIPYFELAGYEADDLIGTITT 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 E G V I++ D+D +QLVSP T + T K E D V K+G+ P ++V L Sbjct: 121 RGEATGLNVIILTGDRDALQLVSPKTKVMLTRKGITEIELFDEGLVWDKFGVTPNQIVDL 180 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE-YAETAR 241 +AL GD+ DNIPG+PGIG KTAA L++E+G++E I+ N + R++ +L E A Sbjct: 181 KALQGDASDNIPGVPGIGAKTAAALIKEHGSVEQIIKNIDNL--TPRQQKLLRGMEEQAM 238 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 LS++L + TDVP+ + L + + +L+ LEF LI ++ Sbjct: 239 LSKRLATIVTDVPMDLDLAACSWQGPDNQKLLEIFTELEFKTLIKQL 285 >gi|256847515|ref|ZP_05552961.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] gi|256716179|gb|EEU31154.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] Length = 887 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 225/534 (42%), Positives = 329/534 (61%), Gaps = 18/534 (3%) Query: 448 EILSY--LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504 E+LS +K+ EN K N K + LHR GI + G D +L+SY+L++ +S+D Sbjct: 359 ELLSAPEIKELLENPKIKKDTFNAKAHYVALHRQGIELHGNGFDFLLVSYLLNTNDNSND 418 Query: 505 IASIAQKWLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 + +A + Y + +E+ K + +P D+ S H ++ I QL L +L Sbjct: 419 LGQLAHEHNYYQVQSDEEVYGKGKSRHLPDDR---SVFFTHLVQKGMAIEQLKHPLTDQL 475 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 + +Y +++P+ V+++MEI G+ +D LK++ +++ + L LE+ IY+ +GE+ Sbjct: 476 HENEQWPLYTDIERPLSHVLAKMEIAGVHVDATTLKEMGSKLKERLAELEQAIYNEAGEE 535 Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 FN++S KQLG ILF K+K P KTKTG + T+ + LE++ G PII NIL +RQ+SKI Sbjct: 536 FNINSTKQLGTILFEKMKLPVIKKTKTG-YSTSVEVLEKLQ-GRAPIIDNILVYRQISKI 593 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739 +STY L I+ Q++HT Y T TGRL+S++PNLQNIP++ + G+KIRRAF S Sbjct: 594 QSTYITGLLKVIHSSDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRRAFKPS 653 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMR 798 P K+ S+DYSQ+ELR+LAH+ L Q F + DIH A IF + EKV+P MR Sbjct: 654 QPGWKIFSSDYSQVELRVLAHVTGDRNLQQDFIDGKDIHESTARRIFHLLPGEKVTPNMR 713 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 R AK +NF I+YGIS + L+ + + R +A ++I+ YF FPG+ EYIE ++ GY Sbjct: 714 RQAKAVNFGIVYGISDYGLSQNIHVTRKQAHEFIQSYFKEFPGVQEYIENIVKLAKKQGY 773 Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 VET+ RR + EINS S R+ ER A+N PIQGSAADI + AMI++++ L+ L Sbjct: 774 VETLTHRRRYLPEINSKNFSRRSFAERTAMNTPIQGSAADIIKIAMINMNEQLQKAGLKA 833 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 KMLLQIHDEL+FE PEEEI +++ M+ A + L VPLKV KV + W Sbjct: 834 KMLLQIHDELIFEAPEEEIDQLRELVPKVMDSA----VKLDVPLKVESKVGDTW 883 Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 163/307 (53%), Gaps = 15/307 (4%) Query: 4 ENHLFLVDGSSFIYRAFYATPL-LSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 E L L+DG+S ++RAFYA + R DGL AI GF ML +L N + ++ Sbjct: 3 EKQLLLIDGNSIVFRAFYAMHTQIDRFTNQDGLHTAAIYGFKLMLDHVLDNFKPDAAL-- 60 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR Y DYKA R K PE L Q P VR +A G+ + E+ +EADDI Sbjct: 61 --VAFDAGKTTFRTAKYHDYKAGRAKTPEELTEQFPYVRQLVEASGLHSYELPDYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176 I T A++ GF I+S D+DL QL + T + T K E E++ +K G+ P Sbjct: 119 IGTLAKQADQAGFRTLIVSGDRDLTQLATDHTTVAVTKKGVTQTEHFTPEYMKEKLGVTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + ++AL GDS DN PG+ IG KTA L++EYG+L+ + N ++K+ KR+EN++ Sbjct: 179 TQFIDVKALMGDSSDNYPGVTKIGEKTALNLIREYGSLDGLYENIDQMKKSKRKENLINE 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 AR + L +R D P+ I L L E +LI + L F + ++ D Sbjct: 239 EAIARQCQDLARIRRDAPVKIGLADLAYEGPQQEKLIDLFEKLNFKSFLAKMQVAPDTH- 297 Query: 297 ANIEPVV 303 +PVV Sbjct: 298 ---QPVV 301 >gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8] Length = 876 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 212/505 (41%), Positives = 320/505 (63%), Gaps = 28/505 (5%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534 GI +RG D++L +Y+L+ + + D+A++A+ K R + K K S+P Sbjct: 384 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 439 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE------RLDKPMIDVVSQMEITGI 588 + + EH + + I W L RP L L E +L++P+ ++++ME TGI Sbjct: 440 EPTLAEHLVRKAAAI---WALERPSL---DELRSNEQDGLLIKLEQPLATILAEMEFTGI 493 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ++D L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P KTKTG Sbjct: 494 KVDTKRLEQMGSELAEQLRAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG 553 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T+A LE++ + I++NIL +RQL K++STY + L ++ T +VHT ++ A T Sbjct: 554 -YSTSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHPDTGKVHTMFNQALT 611 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPL 767 TGRL+S EPNLQNIPI+ + G+KIR+AF+ S P + +ADYSQIELR+LAHIA L Sbjct: 612 QTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNL 671 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F LDIH A +IF V+ E+V+ MRR AK +NF ++YGIS + LA L I R E Sbjct: 672 IEAFRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGVVYGISDYGLAQNLNITRKE 731 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 AA++I+RYF FPG+ Y+E +Q GYV T+ RR + +I S ++R+ ER A Sbjct: 732 AAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTA 791 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +N PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+ E P+EE+ Q++ Sbjct: 792 MNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPEV 851 Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972 ME+A + LRVPLKV+ W Sbjct: 852 MEQA----VALRVPLKVDYHYGPTW 872 Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/323 (39%), Positives = 185/323 (57%), Gaps = 15/323 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L R +H V Sbjct: 3 NKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKILAEER----PTHLLVA 57 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E + +YK R + P L Q PL+R A+ IPA E+ +EADDII T Sbjct: 58 FDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDIIGTL 117 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKM 179 AE+EGF V +IS D+DL QL SP + D K+ DIE V +K+G+ PE+M Sbjct: 118 AARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLTPEQM 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +EN+ +Y + Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQYRDL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS++L +R D P+ + L+ +I E + ++I+ K L F + ++ D A Sbjct: 237 ALLSKQLAAIRRDAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAPTAED 292 Query: 300 EPVVLDINTTENKGIAIETEIDR 322 E ++++ GI E D+ Sbjct: 293 ETPLMEMEFVIADGITDEMLADK 315 >gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] Length = 874 Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust. Identities = 208/521 (39%), Positives = 316/521 (60%), Gaps = 19/521 (3%) Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514 +E K+ +N K G +RG DI L +Y+L+ + + + +A + L Sbjct: 369 LLADETIPKVTYNAKDVCNACKAKGTELRGLCFDIQLAAYLLEPTAAKYPLTELACQHLG 428 Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574 ++ K + ++A + V+ +L+ +L+ KL+ L +YE ++ Sbjct: 429 LAVGDMDKEHLGT-----------PDYAGWAAEVVQRLYPVLKEKLVAAGLAELYEEIEL 477 Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P++ V+S+MEI GI++D L ++ EI+ + +L IY L+G++FN++S +QLG ILF Sbjct: 478 PLVPVLSEMEIAGIRVDLTQLDALAQEITDRIETLLTEIYQLAGQEFNVNSTRQLGHILF 537 Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 LK P KTKTG + T A+ LE++ G +P+I +LE+R L+K+KSTY D L + I Sbjct: 538 EVLKLPVIKKTKTG-YSTDAEVLEKL-AGQHPLIDCLLEYRLLTKLKSTYLDGLRDLIRA 595 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQI 753 T R+HT ++ T TGRL+S EPNLQNIPI+T++G++IR F+ P ++SADYSQI Sbjct: 596 DTGRIHTHFNQTVTATGRLSSSEPNLQNIPIRTEIGRRIRELFVPGPGYDWIMSADYSQI 655 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELR+LAH++ L F ++ DIH AAE+FGV + +V+ QMR AK +NF I+YGIS Sbjct: 656 ELRVLAHMSGDDNLIDAFRHNQDIHTHTAAEVFGVPMAEVTAQMRARAKAVNFGIVYGIS 715 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 F L+ + + R EA YI YF ++ G+ YI+ N RQ GYV T+FGRR +IN Sbjct: 716 DFGLSRDIGVSRKEAGQYIDSYFAKYRGVKNYIDNVINLARQQGYVTTLFGRRRFLPDIN 775 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S + R ER A+N PIQG+AADI ++AMI+V++ L D +L +++LLQ+HDELV EV Sbjct: 776 SGNFNQRAFAERTAMNTPIQGTAADIIKKAMITVYRQLRDRRLKSRLLLQVHDELVLEVA 835 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E E +Q++ +ME A + L VPL ++K NW + Sbjct: 836 EAERVLVAQLVKQAMEDA----VTLAVPLVADVKTGANWAQ 872 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 119/295 (40%), Positives = 177/295 (60%), Gaps = 12/295 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + ++DGSS ++RAFYA P L+ GL NA+ GF ML KLL +++ + IA V FD Sbjct: 5 MVIIDGSSLMHRAFYALPPLTTAA-GLYTNAVYGFTTMLVKLLSDNKPDLIA----VAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y +YK++R P L Q LV AFGIP +E G+EADDII T Sbjct: 60 KGRETFRSQVYAEYKSHRQATPGELSEQFALVHEVLAAFGIPVLEKPGYEADDIIGTLAA 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCL 182 A ++ + V I++ D+D +QL+ P T + T K E +DI + +K+G+ PE++ L Sbjct: 120 QASRQDYDVFIVTGDRDALQLIGPRTKVMLTRKGISETELVDINVLQEKYGLLPEQITDL 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD+ DNIPG+PGIG KTA LL+E+G++EN+L N ++ KK +E++ AE A L Sbjct: 180 KGLMGDASDNIPGVPGIGEKTAGKLLREFGSVENLLANIDKVSGKKLQESLRANAELALL 239 Query: 243 SRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 S+KL + DVP+ LE L D + R+ + LEF L+ ++ +D A Sbjct: 240 SKKLATIVCDVPLDCSLEALKAAPDVD--RVREVFQRLEFKSLLAKLPELFDSKA 292 >gi|289434845|ref|YP_003464717.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171089|emb|CBH27631.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 875 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 227/552 (41%), Positives = 328/552 (59%), Gaps = 19/552 (3%) Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 FI L++H+ + + T E K++ E++ K+ ++ K + +HR G ++ G Sbjct: 332 FIGLTIHSDKGTYFFTKETAENSPAFKEWIESDAS-KVVYDAKKTMVAMHRLGYAVSGIT 390 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541 DIML SY+L+ S D S+A + YT E K K S P +++ V H Sbjct: 391 FDIMLASYLLNPSDSIADFTSVAIRH-DYTEVETDEAVYGKGAKRSTPEERV----VAPH 445 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 + I L L L + L + E L+ P+ V++QME+ G+ +D L+ + E Sbjct: 446 LARKAVAIAVLEKRLLDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTKRLEDMKVE 505 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 ++ L +LEE+I+ L+GE+FN++SPKQLG ILF KL P+ KTKTG + T A LE + Sbjct: 506 LAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL- 563 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 G + II IL +RQL KI+STY + L +K T +VHT ++ T TGRL+S++PNLQ Sbjct: 564 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 623 Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 NIPI+ + G+KIR+ F+ S P K+ SADYSQ+ELR+LAHI++ L F++ DIH Sbjct: 624 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A ++F V E+V MRR AK +NF I+YGIS + L+ L I R +A D+I RYF +P Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYP 743 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 + EY++ F ++ GYVETI RR + EI S ++R ER A+N PIQGSAADI Sbjct: 744 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 803 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 ++AMI + L+ KL K+LLQ+HDEL+FE PE EI +I+ ME A + L V Sbjct: 804 KKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 859 Query: 961 PLKVNIKVSNNW 972 PLKV+ + W Sbjct: 860 PLKVDSAFGDTW 871 Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/309 (37%), Positives = 170/309 (55%), Gaps = 10/309 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S RAFYA PLL+ G+ NA+ GF ML +L+ + SH V Sbjct: 2 NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + YK R K P L Q P +R A+ IP E+ +EADDII T Sbjct: 57 FDAGKTTFRHATFKGYKGGRQKTPSELSEQFPFIRELLAAYDIPQYELANYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 T AE +G V II+ D+DL QL S T +Y T K E E + +K+ + P +++ Sbjct: 117 TKKAEADGLEVAIITGDRDLTQLASDKTTVYITKKGIADMETNTPETLKEKYNLTPAQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIKQKKRRENILEYAET 239 ++ L GDS DNIPGIPG+G KTA LL E+ G++E++L +A I KK +E +LE E Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGSVESVLEHADEISGKKLKEKVLENKEL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS++L + + PI +E + ++I LK ++FT L+ + +A + Sbjct: 237 AILSKELATINVESPIECTIESTKYDGYQTEKVIPLLKEMQFTTLLKNIEGDTPEEAKEL 296 Query: 300 EPVVLDINT 308 + + D+ T Sbjct: 297 KELTFDVLT 305 >gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314] Length = 904 Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust. Identities = 288/974 (29%), Positives = 479/974 (49%), Gaps = 104/974 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAF+A P + G NA+ GF +ML LL KE SH AV F Sbjct: 22 LMLIDGHSMAFRAFFALPAENFSTTGGQNTNAVYGFLSMLATLL----KEEQPSHIAVAF 77 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR +++PDYKA R P Q+ +++ + GI IE + +EADDIIAT Sbjct: 78 DVGRKTFRTDLFPDYKAQREATPPEFKGQVEILKDVLKTLGITTIEKEDYEADDIIATLA 137 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A+ G+ I++ D+D QLV+ TT LY P + L Sbjct: 138 VAAKPLGYDTLIVTGDRDSFQLVNDTTTVLY-------------------PMRGVSVLHR 178 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 T ++++ G+ Y A L G+ + L N + +K + I+EY L Sbjct: 179 FTPEAVEEKYGLTPSQYPDFAAL---RGDPSDNLPNIPGVGEKTATKWIVEYGSLDNL-- 233 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 LEH ++ G SF + L+ ++ ++ + P L Sbjct: 234 --------------LEHA--DEIKGKAGNSFRERLDQVRMNRKLTEMIKDMELPVGPDDL 277 Query: 305 DINTTENKGIAIETE-IDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 ++ T + +A E + ++ T ++ +++ +T ++ +E ++ + + Sbjct: 278 EMGTADVAEVATEFDALEFGTNLRERVLAAV----------KTDGEIPVEAVENRDEVGV 327 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 + + ++T+ + + +G+ + T DA HS IAI D++ Sbjct: 328 DTLPLDEWLSTRRGRPLAVAVTGVGTPA------TGDA-HS----IAIVDTDRR------ 370 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 + DL+ +T E L + +E K+ H K +L G + Sbjct: 371 --AVVADLA-----------DITPEAEKALAGWLADEASPKLLHGAKAVFHMLAGRGFEL 417 Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS--IPIDKISDSQVQE 540 RG E D + +Y+L G+ ++++A + Q+ L ++++ S S + + DSQV Sbjct: 418 RGIEHDTAIAAYLLRPGQRTYELADVYQRHL---QRQLNPSNNGSNQLTLLDAGDSQV-- 472 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 ++ + IL+L L +L +Y L+ P++ ++++ME TGI +D L++ Sbjct: 473 -LVDEAVAILELAGELTSQLQEINGFELYRDLEIPLLSILARMEATGIAVDVATLEEQLE 531 Query: 601 EISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 + EE +L+G+ NLSSPKQL +LF P KTKTG A+ Sbjct: 532 TFIDQVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKKTKTGYSTAAAEIEAL 591 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 +P + ++L RQ K+K+T + L + R+HT ++ TGRL+S +PN Sbjct: 592 AAKNPHPFLDHLLAHRQYQKMKTTL-EGLIRSVGS-DGRIHTTFNQTVASTGRLSSTDPN 649 Query: 720 LQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 LQNIP++T+ G+KIR F+ + L++ADYSQIE+R++AH+++ L + + D+H Sbjct: 650 LQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 709 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 V +++F V I+ V+P++RR K +++ ++YG+S F L+ QL IP EA ++ YF R Sbjct: 710 NYVGSKVFDVPIDGVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKTIMESYFER 769 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 F G+ Y+ + R++GY ET+FGRR + E+NS R ERAA+NAPIQG+AAD Sbjct: 770 FGGVQRYLAEVVEQARKSGYTETLFGRRRYLPELNSDNRVARENAERAALNAPIQGTAAD 829 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I + AMI V + L + +++LLQ+HDELV E+ E+ I+ M+ A I L Sbjct: 830 IIKVAMIRVDRELRATGVKSRVLLQVHDELVVEIAPGELEQVQGILEREMDNA----ITL 885 Query: 959 RVPLKVNIKVSNNW 972 RVPL+V+ +W Sbjct: 886 RVPLEVSAGSGRDW 899 >gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314] Length = 945 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 288/974 (29%), Positives = 479/974 (49%), Gaps = 104/974 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAF+A P + G NA+ GF +ML LL KE SH AV F Sbjct: 63 LMLIDGHSMAFRAFFALPAENFSTTGGQNTNAVYGFLSMLATLL----KEEQPSHIAVAF 118 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR +++PDYKA R P Q+ +++ + GI IE + +EADDIIAT Sbjct: 119 DVGRKTFRTDLFPDYKAQREATPPEFKGQVEILKDVLKTLGITTIEKEDYEADDIIATLA 178 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A+ G+ I++ D+D QLV+ TT LY P + L Sbjct: 179 VAAKPLGYDTLIVTGDRDSFQLVNDTTTVLY-------------------PMRGVSVLHR 219 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 T ++++ G+ Y A L G+ + L N + +K + I+EY L Sbjct: 220 FTPEAVEEKYGLTPSQYPDFAAL---RGDPSDNLPNIPGVGEKTATKWIVEYGSLDNL-- 274 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 LEH ++ G SF + L+ ++ ++ + P L Sbjct: 275 --------------LEHA--DEIKGKAGNSFRERLDQVRMNRKLTEMIKDMELPVGPDDL 318 Query: 305 DINTTENKGIAIETE-IDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPI 363 ++ T + +A E + ++ T ++ +++ +T ++ +E ++ + + Sbjct: 319 EMGTADVAEVATEFDALEFGTNLRERVLAAV----------KTDGEIPVEAVENRDEVGV 368 Query: 364 NNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK 423 + + ++T+ + + +G+ + T DA HS IAI D++ Sbjct: 369 DTLPLDEWLSTRRGRPLAVAVTGVGTPA------TGDA-HS----IAIVDTDRR------ 411 Query: 424 VETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM 483 + DL+ +T E L + +E K+ H K +L G + Sbjct: 412 --AVVADLA-----------DITPEAEKALAGWLADEASPKLLHGAKAVFHMLAGRGFEL 458 Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS--IPIDKISDSQVQE 540 RG E D + +Y+L G+ ++++A + Q+ L ++++ S S + + DSQV Sbjct: 459 RGIEHDTAIAAYLLRPGQRTYELADVYQRHL---QRQLNPSNNGSNQLTLLDAGDSQV-- 513 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 ++ + IL+L L +L +Y L+ P++ ++++ME TGI +D L++ Sbjct: 514 -LVDEAVAILELAGELTSQLQEINGFELYRDLEIPLLSILARMEATGIAVDVATLEEQLE 572 Query: 601 EISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 + EE +L+G+ NLSSPKQL +LF P KTKTG A+ Sbjct: 573 TFIDQVTREEEAARELAGDPTLNLSSPKQLQTVLFETFGMPKTKKTKTGYSTAAAEIEAL 632 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 +P + ++L RQ K+K+T + L + R+HT ++ TGRL+S +PN Sbjct: 633 AAKNPHPFLDHLLAHRQYQKMKTTL-EGLIRSVGS-DGRIHTTFNQTVASTGRLSSTDPN 690 Query: 720 LQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 LQNIP++T+ G+KIR F+ + L++ADYSQIE+R++AH+++ L + + D+H Sbjct: 691 LQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLH 750 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 V +++F V I+ V+P++RR K +++ ++YG+S F L+ QL IP EA ++ YF R Sbjct: 751 NYVGSKVFDVPIDGVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKTIMESYFER 810 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 F G+ Y+ + R++GY ET+FGRR + E+NS R ERAA+NAPIQG+AAD Sbjct: 811 FGGVQRYLAEVVEQARKSGYTETLFGRRRYLPELNSDNRVARENAERAALNAPIQGTAAD 870 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I + AMI V + L + +++LLQ+HDELV E+ E+ I+ M+ A I L Sbjct: 871 IIKVAMIRVDRELRATGVKSRVLLQVHDELVVEIAPGELEQVQGILEREMDNA----ITL 926 Query: 959 RVPLKVNIKVSNNW 972 RVPL+V+ +W Sbjct: 927 RVPLEVSAGSGRDW 940 >gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C] gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389] gi|123388086|sp|Q1RH76|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C] gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389] Length = 871 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 213/475 (44%), Positives = 300/475 (63%), Gaps = 12/475 (2%) Query: 506 ASIAQKWLSYTRKEILK-SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE- 563 AS AQ+ + E++ + + +P + ++ +E IE + I+ ++ L + I+E Sbjct: 401 ASRAQQITAIEDLELMNYALSAGLPQKNLFEAVEKEATIEEAAKIVVGFIDLYQQTILEL 460 Query: 564 ---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 K +Y+ +D P+ V+ +ME GI++D + L Q+S+E +L LEE I+ LSG K Sbjct: 461 KDNKAFRIYKEIDLPVCFVIDKMEKAGIKVDANYLNQLSSEFGAEILKLEEEIFVLSGMK 520 Query: 621 FNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 FN+ SPKQLG+ILF K++ P G K + T A LE+++ PI +L WRQL+K Sbjct: 521 FNIGSPKQLGEILFEKMQLPFGKTSAKANSYSTGADILEKLSEQGYPIADLLLRWRQLTK 580 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 +K+TY DSLP I+ T+R+HT + ST TGRL+S EPNLQN+PI++ G KIR+AF++ Sbjct: 581 LKNTYTDSLPKQIDNITRRIHTTFLQTSTTTGRLSSQEPNLQNVPIRSGEGNKIRQAFVA 640 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 KLISADYSQIELRIL+HIA I L Q F N DIH A +IF + E+++ + RR Sbjct: 641 EQGYKLISADYSQIELRILSHIADIKALKQAFINKDDIHTQTACQIFNLQKEELTSEHRR 700 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK INF IIYGIS F LA QL + +EAA+YIK+YF + G+ EY+E TK+F + NGYV Sbjct: 701 KAKAINFGIIYGISAFGLAKQLNVSNTEAAEYIKKYFAEYKGVQEYMEATKSFAQANGYV 760 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 FGR+ IN + ++ ERAAINAPIQG+ ADI + AM + + +E KL T+ Sbjct: 761 TDFFGRKCFVPLINDKR--LKQFAERAAINAPIQGTNADIIKIAMTLLDREIEKRKLKTR 818 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++LQIHDEL+FE P +EI T II ME + N+ VP+ I+ NNW E Sbjct: 819 LVLQIHDELLFEAPIDEIETIMPIIKQIMENST----NMDVPIITEIRAGNNWME 869 Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 126/318 (39%), Positives = 183/318 (57%), Gaps = 11/318 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M K+N L L+DG F++RA+YA PL S K G PV A+ GF +ML KLL + + + Sbjct: 1 MTKKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLNDFKPK---- 54 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD FR+EIYP+YKANRP PE L+ QLPLVR + P +E GFEADD Sbjct: 55 HAAVVFDSGGKNFRHEIYPEYKANRPPPPEDLIAQLPLVRDVARNLNFPILEKNGFEADD 114 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IIAT+ G V +IS+DKDL+QL++ +YD +K + I ++V++K+G+ +K+ Sbjct: 115 IIATFAAKTASIGEEVVVISSDKDLLQLMNDNVKIYDPLKAKYITEDNVVEKFGVTSDKL 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GD DNIPG+P IG KTA+ L+ ++G +ENI + ++ K+RE + E Sbjct: 175 REVMALIGDKSDNIPGVPSIGPKTASSLITQFGTVENIFNSLEQVSSIKQRETLQNSKEA 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN- 298 A +S +L+ L +V + L+ L + +L FL F L R +D + Sbjct: 235 ALISWQLIGLDYNVDMDFKLDALEWSPPDHNKLTEFLHEYGFKSLYKRAENLFDIKISEH 294 Query: 299 ---IEPVVLDINTTENKG 313 IE ++I NK Sbjct: 295 KEVIEEKAVEIKDISNKA 312 >gi|116492456|ref|YP_804191.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745] gi|116102606|gb|ABJ67749.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745] Length = 887 Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust. Identities = 212/506 (41%), Positives = 318/506 (62%), Gaps = 21/506 (4%) Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----KSRKSSIPI 530 LHR GI + DI+L SY+LD+ +S+D+ +A + K K ++P Sbjct: 390 LHRLGIKLTAVNFDILLQSYLLDTNDNSNDLGQLAHEHDYDAIDTDDDVYGKGAKRAVP- 448 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 +++ H I L L +L+ + ++Y ++ P+ V+++MEI+GI++ Sbjct: 449 ---EQTELFNHLARKLAAINFLGKQLDQELVKNEQNNLYWDIELPLAIVLAKMEISGIKV 505 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D++ L Q+ +E ++ L +E NIY+ +GE+FNL+SPKQLG +LF KLK P KTKTG + Sbjct: 506 DRNRLNQMQSEFTERLSEIETNIYNEAGEEFNLNSPKQLGVVLFEKLKLPIIKKTKTG-Y 564 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T LE++ G++PII NIL +R LSKIKSTY D L I+ ++VHT Y T T Sbjct: 565 STAVDVLEKLQ-GESPIIDNILNYRTLSKIKSTYVDGLLKVIHTTDEKVHTTYVQTLTQT 623 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPL 767 GRL+S++PNLQNIP++ + G+KIR+AF+ P ++ ++S+DYSQIELR+LAHI L Sbjct: 624 GRLSSIDPNLQNIPVRIEEGRKIRQAFV--PAREGWHILSSDYSQIELRVLAHITGDQNL 681 Query: 768 YQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 + F+N DIH A +IFG+ + +V+P +RR AK +NF I+YGIS + L+ + I R Sbjct: 682 QEAFKNGEDIHATTAVKIFGLKDASEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGISRK 741 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 +A +I+ YF FPG+ +YI+++ ++ GYVETI RR + +INS ++R+ ER Sbjct: 742 DAKKFIETYFKEFPGVKKYIDESVQLAKEQGYVETIAHRRRYLPDINSSSFNLRSFAERT 801 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 A+N PIQGSAADI + AMI + LE L ++MLLQ+HDEL+FEVP+EE+T +++ Sbjct: 802 AMNTPIQGSAADIIKIAMIDMENELEKRNLKSRMLLQVHDELIFEVPDEEMTLMKELVPK 861 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972 M+ A + L VPLKV N W Sbjct: 862 VMDSA----VKLDVPLKVGAAWGNTW 883 Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 99/300 (33%), Positives = 162/300 (54%), Gaps = 11/300 (3%) Query: 4 ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 ++ L L+DG+S +R+F+A LS+ +GL NAI GF ML +L+ + + Sbjct: 3 KDKLLLIDGNSIAFRSFFALHNSLSKFVNKNGLHTNAIFGFNKMLDSILEQYQPTAAL-- 60 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFRN + +YK R K P L Q+P +R +GI + E+ +EADDI Sbjct: 61 --VAFDAGKTTFRNGKFDNYKGGRSKTPPELSEQMPYLRELLTGYGIKSYELPNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T AE + +AV +++ D+DL QL S T + T K E+ +V +K G+ P Sbjct: 119 IGTLAKEAEAQDYAVVVVTGDRDLTQLSSEKTIVAVTKKGVSEVEEYTPAYVEEKLGVTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 ++++ ++ L GD+ DN PG+ +G KTA LL+++ +LEN+ + +K K +E+++E Sbjct: 179 KQIIDIKGLAGDTSDNYPGVTKVGEKTAIKLLKQFDSLENLYEHLDELKPSKMKEHLIED 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + A +S+ L +R D PI I L+ + N L F + F ++++ T D Sbjct: 239 RDNAFISKDLATIRRDAPIEISLDDVQYAGINEEYLREFYHQMNFKSFLSKLDQTATQDG 298 >gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici] Length = 878 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 209/502 (41%), Positives = 321/502 (63%), Gaps = 22/502 (4%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ-KWLSYTRKE---ILKSRKSSIPIDKIS 534 GI +RG D++L +Y+L+ + + D+A++A+ K R + K K S+P Sbjct: 386 GIELRGVAFDLLLAAYLLNPAQDAGDVAAVAKMKQYEAVRPDEAVYGKGAKRSLP----D 441 Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 + + EH + + I W L RP +L + + +L++P+ ++++ME TG+++D Sbjct: 442 EPTLAEHLVRKAAAI---WALERPFLDELRSNEQDELLIKLEQPLATILAEMEFTGVKVD 498 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L+Q+ +E+++ L ++E+ IY+L+G++FN++SPKQLG ILF KL+ P KTKTG + Sbjct: 499 TKRLEQMGSELAEQLGAVEQRIYELAGQEFNINSPKQLGIILFEKLQLPVLKKTKTG-YS 557 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+A LE++ + I++NIL +RQL K++STY + L ++ T +VHT ++ A T TG Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVHHDTGKVHTMFNQALTQTG 616 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S EPNLQNIPI+ + G+KIR+AF+ S P + +ADYSQIELR+LAHIA L + Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEA 676 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F LDIH A +IF V+ E+V+ MRR AK +NF I+YGIS + LA L I R EAA+ Sbjct: 677 FRRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I+RYF FPG+ Y+E +Q GYV T+ RR + +I S ++R+ ER A+N Sbjct: 737 FIERYFASFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNT 796 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+ E P+EE+ +++ ME+ Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCRLVPEVMEQ 856 Query: 951 ACLPKINLRVPLKVNIKVSNNW 972 A + LRVPLKV+ W Sbjct: 857 A----VELRVPLKVDYHYGPTW 874 Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/331 (38%), Positives = 188/331 (56%), Gaps = 15/331 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M+ + L L+DGSS YRAF+A PLL G+ NA+ GF ML K+L R +H Sbjct: 1 MRLKKKLVLIDGSSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKMLAEER----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R + P L Q PL+R A+ IPA E+ +EADDI Sbjct: 56 LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLNAYRIPAYELDRYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 I T AE+EGF V +IS D+DL QL SP + D K+ DIE V +K+G+ Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVEEKYGLT 174 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PE++V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +EN+ + Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQ 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 Y + A LS++L +R D P+ + L+ +I E + ++I+ K L F + ++ D Sbjct: 235 YRDLALLSKQLAAIRRDAPVELSLDDIIYEGQDREKVIALFKELGFQSFLEKM----DAP 290 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTI 326 A E ++++ GI E D+ + Sbjct: 291 TAEDETPLMEMEFVAADGITDEMLADKAALV 321 >gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel] gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel] Length = 875 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 220/498 (44%), Positives = 302/498 (60%), Gaps = 35/498 (7%) Query: 482 SMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541 ++ ED+ L+ Y L +G S ++ AQK V E+ Sbjct: 406 AITAIEDLELIQYALSAGLSQKNLFEEAQK------------------------ETVIEN 441 Query: 542 AIENSNVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 I S I+ ++ L + I+E K +Y +D P+ ++ +ME GI++D + LKQ Sbjct: 442 IINESAKIVINFISLYKQKILELKDNKAFRLYSNIDLPICFILDKMEKVGIKVDANYLKQ 501 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQD 656 +SAE + LEE I+ LSG KFN+ +PKQLG+ILF K++ P G A KT + T + Sbjct: 502 LSAEFGTEIARLEEEIFALSGTKFNIGAPKQLGEILFEKMQLPFGKASAKTNSYSTGVEI 561 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 L++++ I +L WRQL+K+K+TY DSLP I+ T+RVHT + ST TGR++S Sbjct: 562 LKKLSKHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITRRVHTTFLQTSTTTGRISSQ 621 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 EPNLQN+PI++ G KIR+AFI KLISADYSQIELRIL+HIA I L Q F N D Sbjct: 622 EPNLQNVPIRSSEGNKIRQAFIPEKGYKLISADYSQIELRILSHIANIDALKQAFTNKDD 681 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A +IF + +K++ + RR AK INF IIYGIS F LA QL + SEAA+YIK+YF Sbjct: 682 IHTQTACQIFNLPKDKLTSKHRRKAKAINFGIIYGISAFGLAQQLNVTNSEAAEYIKKYF 741 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 + G+ EYIE+TK FV NGYV FGR+ I++ K ++ ERAAINAPIQG+ Sbjct: 742 AEYKGVQEYIEQTKAFVSSNGYVTNFFGRKCFLPSIHNKK--LKQFAERAAINAPIQGTN 799 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI++ + +E KL T+++LQIHDEL+FE P +EI II ME + Sbjct: 800 ADIIKIAMINLDQEIEKLKLKTRLVLQIHDELLFEAPTDEIELVIPIIKKIMENST---- 855 Query: 957 NLRVPLKVNIKVSNNWQE 974 N+ VP+ I+ NNW E Sbjct: 856 NMDVPIITEIRAGNNWME 873 Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/294 (41%), Positives = 173/294 (58%), Gaps = 7/294 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M K+N L L+DG F++RA+YA PL S K G PV A+ GF +ML KLL + + + Sbjct: 1 MTKKNTLLLIDGYGFVFRAYYAQQPLTSPK--GKPVGALYGFTSMLLKLLSDFKPK---- 54 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD FR+ IYP+YKANRP PE L+ QLPLVR + P +E G+EADD Sbjct: 55 HVAVVFDSGGKNFRHHIYPEYKANRPPPPEDLIIQLPLVRDVASSLNFPILEKNGYEADD 114 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IIAT+ G V IIS+DKDL+QL++ +YD +K + + V+KK+G K+ Sbjct: 115 IIATFATKTAALGEDVVIISSDKDLLQLMNENIKIYDPLKGKYSTEDDVVKKFGTTANKL 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GD DNIPG+P IG KTA+ L+ ++G++ENI + +I K+RE + E Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSIENIFNSLDQISSVKQRETLQNSKEA 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 A +S +L+ L ++V + L +L N +L FL+ F L R +D Sbjct: 235 ALISWQLIGLDSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYRRAENLFD 288 >gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] Length = 914 Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust. Identities = 217/547 (39%), Positives = 322/547 (58%), Gaps = 14/547 (2%) Query: 433 VHTSQD-STGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDI 489 H +D S N L E+ L ++ LK+GHN+KYD VLHR+ + + D Sbjct: 369 AHRREDGSAAANQLPLAEVRRALAPLLADDRRLKLGHNLKYDLQVLHRHDLPLAPPLADT 428 Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 M+ SY++D R SH + ++++ L + E+ + ++ + ++ E+ Sbjct: 429 MIASYLIDPSRRSHGLDVLSEELLQRRLTSFAEVTDRDRRPEAFAHVAPAAAAAYSCEDV 488 Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 LW L +PKL +L ++ +++ ++ ++++ME GI +D +LK+++AE S+ L Sbjct: 489 AATRLLWQLFQPKLAELELAELFYQVEITLLPILARMERVGILLDGQVLKELAAEFSQEL 548 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK--TGQWKTTAQDLEQINCGD 664 L IY L+G +FN++SP+QLG++LF +LK P G KTK TG + T ++LE++ Sbjct: 549 ERLSSKIYQLAGVEFNINSPRQLGEVLFERLKLPHGRKTKGKTG-YSTDIRELERLAAYH 607 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 + + I+ R LSK+KSTY D L IN R+HT ++ T TGRL+S PNLQNIP Sbjct: 608 D-LPAAIIAQRNLSKLKSTYVDKLSTLINPADGRIHTSFNQTVTATGRLSSSNPNLQNIP 666 Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 ++T G++IR AFI+ P + ++ADYSQI+LR+LAH + L + F+ DIHR AAE Sbjct: 667 VRTQEGRRIRGAFIAAPGHRFLAADYSQIDLRVLAHYSADPMLLEAFQQDQDIHRRTAAE 726 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 IF VN V+ MRR AKTINF IIYG+S F LA QLR R EA +I RYF + G+ Sbjct: 727 IFRVNPAMVTADMRRVAKTINFGIIYGMSAFGLAEQLRCSRKEAQVFIDRYFELYRGVKT 786 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 ++E+ R++G+V T+ RR EINS R ER AIN PIQG+AADI + A Sbjct: 787 FMEEIVEQARRDGFVRTLLKRRRQLPEINSSNKLRREFAERTAINTPIQGTAADIIKLAA 846 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 I+ + L T+ LLQIHDEL+FEVPE+E +++ +ME + L VPL+V Sbjct: 847 IACDRELRRKNFNTEALLQIHDELIFEVPEDEQAAVGKLVQQAMENV----MELTVPLRV 902 Query: 965 NIKVSNN 971 N+K N Sbjct: 903 NLKSGPN 909 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 166/285 (58%), Gaps = 5/285 (1%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L+L+DGS++IYRA++A LS G P +A+ GF L +++ +E + Sbjct: 1 MSSREPLYLIDGSAYIYRAYHAIRPLSNAA-GQPTHAVYGFTTTLLRVI----REKTPRY 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A+ +D FR+EIYP YKANRP++P L Q+P ++ A+ I +E G EADD+ Sbjct: 56 LAIAYDSKGPNFRHEIYPAYKANRPEMPADLACQIPYIKEVVSAYHITTLEQAGVEADDL 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IA + I+S DKDL+QLV+ L+D +++ +D V KK+ + P++++ Sbjct: 116 IAAAARRLAGPDQPLIIVSGDKDLLQLVNEWVTLWDPMQDTFMDPAAVAKKYQVSPQQLL 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 AL GDS DN+PG+PG+G KTAA L+ ++G+LE + N ++ K RE + + + A Sbjct: 176 DYFALIGDSSDNVPGVPGVGPKTAAKLIDQFGSLEQLFANLEQVSAAKLREKLAAHRQDA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 +L+R+L+ L+ D+ + L+ L + +L LEFT+LI Sbjct: 236 QLARRLIRLKDDLELPTSLDDYTLPPPDQDKLRQLFTELEFTRLI 280 >gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis] Length = 875 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 220/493 (44%), Positives = 304/493 (61%), Gaps = 35/493 (7%) Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 ED+ LM Y L +G S ++ KE+LK ID I IE++ Sbjct: 411 EDLELMQYALSAGLSQKNLF-----------KEVLKE----TLIDNI--------IIESA 447 Query: 547 NVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 +++ ++ L + I+E K +Y +D P+ ++ +ME GI +D + LKQ+SAE Sbjct: 448 KIVIN-FISLYKQTILELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYLKQLSAEF 506 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQIN 661 +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A KT + T A+ LE+++ Sbjct: 507 GTEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKTSSYSTGAEILEKLS 566 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 I +L WRQL+K+K+TY DSLP I+ T RVHT + ST TGRL+S EPNLQ Sbjct: 567 EHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQ 626 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 N+PI++ G +IR+AFI+ KLISADYSQIELRIL+HIA I L Q F N DIH Sbjct: 627 NVPIRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQT 686 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A +IF + +++ + RR AK INF IIYGIS F LA QL + EA++YIK+YF + G Sbjct: 687 ACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKG 746 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + EY+E+TK F NGYV FGR+ I+ K ++ + ERAAINAPIQG+ ADI + Sbjct: 747 VQEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKK--LKQLAERAAINAPIQGTNADIIK 804 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI++ + +E KL T+++LQIHDEL+FE P +E+ + II ME + N+ VP Sbjct: 805 IAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NMDVP 860 Query: 962 LKVNIKVSNNWQE 974 + I+ NNW E Sbjct: 861 IITEIRAGNNWME 873 Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/294 (41%), Positives = 173/294 (58%), Gaps = 7/294 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M ++N L L+DG F++RA+YA PL S K G PV A+ GF +ML KLL + + + Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLSDFKPK---- 54 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD FR++IYPDYKANRP PE L+ QLPLVR P +E G+EADD Sbjct: 55 HVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADD 114 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IIAT+ G V IIS+DKDL+QL++ +YD +K + I + V+ K+G K+ Sbjct: 115 IIATFATKTAALGEHVVIISSDKDLLQLMTKNIKIYDPLKGKYITEDDVVTKFGTTSNKL 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GD DNIPG+P IG KTA+ L+ ++G++ENI + ++ K+RE + E Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREA 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 A +S +L+ L ++V + L +L N +L FL+ F L RV D Sbjct: 235 ALISWQLIGLDSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288 >gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] Length = 903 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 218/605 (36%), Positives = 348/605 (57%), Gaps = 19/605 (3%) Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430 + ++++I V +L + + +A ++ A+A+S+ D F V FI Sbjct: 315 VADSQNIDSIVSRLANAKELALAVSGTPEEAMDARLTALALSS--AAGDACF-VPAEFI- 370 Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DI 489 S G+ E S L +E K HN KY +L G +++G + D Sbjct: 371 -----GSASEGQ-MFAAEGHSGLAALLGDEKISKTAHNAKYLMNLLLSAGQAVKGLDFDT 424 Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549 M+ +++L G + I + + +I + S+ Q+ E A ++ Sbjct: 425 MIAAHLL--GEKNLAIKDLVFEHFGIEIADIENILTRNGKKASFSEVQLSEAAQLAADYT 482 Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609 +L + +L +L+ ++ R++ P++ ++ ME TGI +D DLLK ++ + + + L Sbjct: 483 FRLKGIFAAQLAETRLMDLFARVEMPLLPILLGMERTGIMLDTDLLKAMAEKTGRQIFKL 542 Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669 EE+IY +G FN+ SP+QLG ILF +LK P KTKTG + T A+ LE++ G + I+ Sbjct: 543 EEDIYARAGHNFNIGSPQQLGRILFDELKLPVIKKTKTG-YSTGAEVLEELK-GKHRIVD 600 Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729 ILE+R L K+KSTY D+LP +N T+R+HT ++ T TGRL+S EPNLQNIP++ ++ Sbjct: 601 LILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIPVRGEM 660 Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789 G++IRRAFI+PP L++ DYSQI+LR+LAH+++ L + F++ DIH AA + + Sbjct: 661 GREIRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNIP 720 Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849 KV+ + RR AKT+NF +IYG+S + L + EA +IK YF ++P + Y + Sbjct: 721 PSKVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLEEADKFIKAYFEKYPRVAVYFSEI 780 Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 K VR GYVET+ GRR + EINSP +R ER AIN P+QG++ADI + AM+ + + Sbjct: 781 KQQVRTQGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKLAMVRLDE 840 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 L++ KL +++LLQ+HDEL+FEVP+ E+ S ++V +M A + +PLKV +K Sbjct: 841 KLKEEKLKSRLLLQVHDELIFEVPKTELGRMSDLLVETMSGA----VAFEIPLKVELKSG 896 Query: 970 NNWQE 974 NW + Sbjct: 897 ANWGD 901 Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 107/296 (36%), Positives = 160/296 (54%), Gaps = 26/296 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L DG++ ++RA++ P L+ + G V A GF ++L K+L + + + +A+ FD Sbjct: 6 IVLFDGTNLVHRAYHVLPPLAIRKTGEVVGAAFGFASILIKVLTDLKPDC----YAISFD 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ YKA RP +P+ L+ QL VR AF +P E GFEADD++ T Sbjct: 62 RKGPTFRHEMFKAYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLAT 121 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--------------TTCLYDTVKEEKIDIEHVIKKW 172 A G V I S D D MQLV P +T LYD V V K+ Sbjct: 122 RAAAAGMEVIIASGDADSMQLVGPDIRILYPGPAGSFASTSLYDEVA--------VRAKY 173 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 G+ PE + +AL GD DNIPG+PGIG KTA L++EYG +E+I N +I ++ Sbjct: 174 GLGPEHIADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKK 233 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + + AE AR S+ L + D+P+ +E E N +++ + LEF +LI+R+ Sbjct: 234 LADNAEVARDSKILTTIVCDLPLDFSIEECRAEHYNRQKVVDLFRELEFFRLIDRL 289 >gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168] gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168] Length = 870 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/425 (47%), Positives = 285/425 (67%), Gaps = 7/425 (1%) Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608 I +L + PKL +L+ ++ ++ P+I V++++E GI++D + L+ +S + + L Sbjct: 443 IFKLAEGMVPKLEDMELIELFNDIEIPLITVLAELEYNGIKVDAEYLESLSRKWEEELNG 502 Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668 LE I++L+GEKFN++SPKQLG ILF KL P KTKTG + T A+ LE++ +PII Sbjct: 503 LESKIHELAGEKFNINSPKQLGGILFEKLGLPVIKKTKTG-YSTGAKVLEKLE-DKHPII 560 Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728 I E+RQL K+KSTY D+LP IN T R+HT ++ T TGRL+S EPNLQNIP++TD Sbjct: 561 PLISEYRQLMKLKSTYVDALPPMINPDTGRLHTSFNQMVTATGRLSSTEPNLQNIPVRTD 620 Query: 729 LGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 G++IRRAFI+ L++ADYSQIELR+LAHI+ L F DIH A+E+F Sbjct: 621 EGREIRRAFITENEDWVLLAADYSQIELRVLAHISDDEGLKAAFNTGQDIHTQTASEVFE 680 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 V ++V+P MRRHAK INF I YG+SP+ LA L I R EA+DYI +YF RF G+ +Y+E Sbjct: 681 VEPDEVTPNMRRHAKVINFGIAYGMSPYGLARDLGISRQEASDYINKYFERFTGVKDYME 740 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 + + GYV TIF RR + EINS R+ ER AIN PIQG+AADI + AMI V Sbjct: 741 RVVTEAKTKGYVTTIFNRRRYIPEINSRNYHRRSFAERTAINTPIQGTAADIMKLAMIKV 800 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 + L+++ ++LLQ+HDEL+ EVP E++T ++I+ MEKA ++++VPL VN++ Sbjct: 801 YNRLKENGSPARILLQVHDELILEVPREDLTEMARIVKSEMEKA----VDMKVPLVVNLE 856 Query: 968 VSNNW 972 NW Sbjct: 857 SGPNW 861 Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 128/309 (41%), Positives = 186/309 (60%), Gaps = 9/309 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+DG S +RAFYA PLLS G NA+ GF ML KLL + + IA V FD Sbjct: 5 LYLLDGQSLAHRAFYALPLLSTSR-GEYTNAVFGFTRMLLKLLDEEKPDLIA----VAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y +YKA+R K+PE L PQL L++ ++F IP IEI+GFEADDII T Sbjct: 60 KKAPTFRHKEYKEYKAHRKKMPEELKPQLSLIKEVLKSFSIPIIEIEGFEADDIIGTMAR 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 E+EGF V I++ D+D +QLV+ + T + + D+ V +++ + P++++ + Sbjct: 120 KGEEEGFEVVIVTGDRDALQLVTEDVSVMYTKRGISDIVRYDLNKVRERYELEPQQLIDM 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GDS DNIPG+PGIG KTA LL+E+ +LE IL N ++ KKR+EN+ +YA+ ARL Sbjct: 180 KGLMGDSSDNIPGVPGIGEKTAIKLLKEFSSLEEILDNIDKVSGKKRKENLQKYADQARL 239 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++L ++ DVP+ + L+ L + + + LEF L+NR +I Sbjct: 240 SKRLGEIKVDVPLDVELDECHLGKFHKKNIRELFERLEFASLLNRFKEKTSISIDDISVK 299 Query: 303 VLDINTTEN 311 LD EN Sbjct: 300 ELDRKGLEN 308 >gi|313633103|gb|EFS00003.1| DNA polymerase I [Listeria seeligeri FSL N1-067] Length = 566 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 228/552 (41%), Positives = 327/552 (59%), Gaps = 19/552 (3%) Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 FI L++H+ + + T E K++ E++ K+ ++ K + +HR G ++ G Sbjct: 23 FIGLTIHSDKGTYFFTKETAENSPAFKEWVESDAS-KVVYDAKKTMVAMHRLGYAVSGIT 81 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541 DIML SY+L+ S D S+A + YT E K K S P +S V H Sbjct: 82 FDIMLASYLLNPSDSIADFTSVAIRH-DYTEVETDEAVYGKGAKRSTP----EESVVAPH 136 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 + I L L L + L + E L+ P+ V++QME+ G+ +D L+ + E Sbjct: 137 LARKAVAIAVLEKRLLDDLEKNEQLSLMEDLELPLTFVLAQMEMQGVSVDTKRLEDMKVE 196 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 ++ L +LEE+I+ L+GE+FN++SPKQLG ILF KL P+ KTKTG + T A LE + Sbjct: 197 LAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL- 254 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 G + II IL +RQL KI+STY + L +K T +VHT ++ T TGRL+S++PNLQ Sbjct: 255 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 314 Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 NIPI+ + G+KIR+ F+ S P K+ SADYSQ+ELR+LAHI++ L F++ DIH Sbjct: 315 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 374 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A ++F V E+V MRR AK +NF I+YGIS + L+ L I R +A D+I RYF +P Sbjct: 375 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYP 434 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 + EY++ F ++ GYVETI RR + EI S ++R ER A+N PIQGSAADI Sbjct: 435 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 494 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 ++AMI + L+ KL K+LLQ+HDEL+FE PE EI +I+ ME A + L V Sbjct: 495 KKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 550 Query: 961 PLKVNIKVSNNW 972 PLKV+ + W Sbjct: 551 PLKVDSAFGDTW 562 >gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633] gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633] Length = 883 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 210/535 (39%), Positives = 342/535 (63%), Gaps = 29/535 (5%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K++ +E K + K K+ +R+G+++ G D+ L++Y++D+ ++I +A++ Sbjct: 363 FKQWLADETIEKTMFDTKAMKVFANRFGLTVAGATYDVSLLAYLVDANEIVNEIYDVAKR 422 Query: 512 W---LSYTRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR-PKLIVEKL- 565 + L T +E+ K K +P +E + +++ ++++L PK ++++L Sbjct: 423 FGISLLKTDEEVYGKGVKIKVP---------EEKEVFWNHLAAKIYVLATAPKRLLKQLD 473 Query: 566 ----LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 +Y ++ P+ D++++MEI GI++DQ+ L ++ + + L +E+ IY+L+GE+F Sbjct: 474 ENEQAQLYWEMELPLSDILARMEIQGIRVDQNRLIEMGLQFEERLKEIEQTIYELAGEEF 533 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 N++SPKQLG ILF K+ P KTKTG +TA D+ + +PI++ ILE+RQL+K+ Sbjct: 534 NINSPKQLGVILFEKMNLPVIKKTKTGY--STAVDVLEKLASQSPIVECILEYRQLAKLN 591 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SP 740 STY + L +I+++ ++HT + T TGRL+S +PNLQNIPI+T+ G+++R AF+ S Sbjct: 592 STYVEGLQTYIDEKG-KIHTRFVQNLTQTGRLSSQDPNLQNIPIRTEEGRQVRSAFLPSH 650 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRR 799 P KL+S+DYSQIELR+LAH+A + + F+N++DIH A +FG+ N E+V+ MRR Sbjct: 651 PEWKLLSSDYSQIELRVLAHMANDVHMIEAFKNNIDIHTNTAMRVFGIQNPEEVTSSMRR 710 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK +NF I+YGIS + L+ L IPR +A ++I RY F G+ +Y+E RQN YV Sbjct: 711 QAKAVNFGIVYGISDYGLSQNLNIPRKKAKEFIDRYLEEFQGVKDYMETIVAEARQNDYV 770 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 ET+F RR + EI+S +IR+ ER A+N+PIQG+AADI + AMI + + L + K Sbjct: 771 ETLFHRRRYLPEIHSSNFNIRSFAERTAMNSPIQGTAADILKVAMIELDRELTERNFQAK 830 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +LLQ+HDEL+FEVPEEE+ + ++ ME A ++L VPLK + + NNW E Sbjct: 831 LLLQVHDELIFEVPEEEVESLQSLVEEVMENA----VSLSVPLKADSNIGNNWYE 881 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/281 (36%), Positives = 157/281 (55%), Gaps = 10/281 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L LVDGSS +RAFY+ L+R +GL NA+ F M +L+ +H V Sbjct: 5 LLLVDGSSLAFRAFYSILDLNRFKNQNGLHTNALYSFHRMFKTILEQEN----PTHVLVA 60 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 +D TFR E+Y +YK R K P Q+P + A+GIP + +EADDII T Sbjct: 61 WDAGKTTFRTEMYAEYKGGRAKTPSEFKEQMPYFNVLLDAWGIPHYRLNQYEADDIIGTL 120 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----VIKKWGIPPEKMV 180 Y A KEGF V ++S DKDL+QL +P + T K +E+ + +K+G+ PE+++ Sbjct: 121 AYQASKEGFEVVVLSGDKDLIQLATPEITVKITTKGVSELVEYTPAFINEKYGLTPEQII 180 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++ L GDS DN PG+ +G KTA LLQEYG++E I + +K+ K ++N+++ E A Sbjct: 181 DMKGLMGDSSDNYPGVTKVGEKTAIKLLQEYGSVEGIYEHVEEMKKSKLKDNLIQDKELA 240 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 LS+ L + + P+ I + + ++ + LI F K + F Sbjct: 241 FLSKTLARIDINSPLEITVADTLRKEESIEELIDFYKEMSF 281 >gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ] gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ] Length = 888 Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust. Identities = 219/623 (35%), Positives = 360/623 (57%), Gaps = 25/623 (4%) Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 +Q + D Y I+ +D+++ +LE + +F T +D ++ + I+IS L + Sbjct: 282 AQATLQTDQYHCILTNEDLEKLALRLEAAPAFAFDTETTGLDPRTAELVGISIS-LQAHE 340 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 V ++ + +++ +L L+ F N K+G N+K+D +L Sbjct: 341 AFYIPVGHRYLGMPDQLPRET---------VLERLRPAFGNPAIRKVGQNLKFDLQILAV 391 Query: 479 YGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKIS 534 G+ ++G + D ML SY+L+ R H + ++AQ+ L++ + E+ S K+ I ++ Sbjct: 392 AGLEVQGSWCDTMLCSYLLNPSRGGHGLDALAQEHLNHKMISYDEVTGSGKNRICFSEVE 451 Query: 535 DSQVQEHAIENSNVILQLWLL---LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 + +A E+++ WLL L P L + L + L+ P+++++++ME G+ +D Sbjct: 452 VEKATRYAAEDADAT---WLLHEKLLPMLKEQGLEKLLFELEMPLMEIMTRMEQHGVLLD 508 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L ++ + + LE+ I +L+G FNL+SPKQL ++LF +L +G KTK + Sbjct: 509 LAYLAELGNGFGQRMQELEKRIIELAGGPFNLNSPKQLEEVLFERLGLQAGKKTKGKTGR 568 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 +T ++ ++ I K +L++R L+K+KSTY D+L + R RVHT Y+ A T TG Sbjct: 569 STDNEVLTGLAEEHEIAKLLLDYRGLTKLKSTYTDALAK-LTDRQGRVHTSYNQAVTATG 627 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIPI+TD G++IR AFI+PP +++ADYSQIELR+LAH+++ F Sbjct: 628 RLSSSDPNLQNIPIRTDEGRRIREAFIAPPGCVILAADYSQIELRVLAHLSQDPVFCDAF 687 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIH A+E+FG+ E V+ +MRR AKTINF IIYG F LA QL + R+ A + Sbjct: 688 SQDEDIHTRTASEVFGLFPEMVTSEMRRQAKTINFGIIYGQGAFSLAKQLGVARNVAEKF 747 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I Y R G +++ ++ GYV TI GR++ +I S ++R+ ER AIN P Sbjct: 748 IAAYKERHSGAIAFLDSCIASAKETGYVTTILGRKLPIADITSSNGNLRSFAERNAINYP 807 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGSAADI ++AM+ V +++ L +++++Q+HDELVFEV E E+ +++ M +A Sbjct: 808 IQGSAADIIKQAMLGVDRAIRAEGLQSRLIMQVHDELVFEVLETELEQMRELVNREMSQA 867 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L+VPLKV+I+ NW E Sbjct: 868 ----VALKVPLKVDIQWGKNWSE 886 Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 120/284 (42%), Positives = 176/284 (61%), Gaps = 6/284 (2%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L+L+DGSS++YRA++A LS G P NAI GF ML KLL++ + H A++ Sbjct: 3 NTLYLIDGSSYLYRAYFAIKRLSSP-SGFPTNAIYGFTQMLLKLLKDYQPH----HVAMV 57 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD VTFR E+YP YKANR ++P+ L Q+ +R +AF IP +E+QG+EADD+I T Sbjct: 58 FDVGRVTFRTELYPAYKANRAEMPDDLRQQIGPIRDLVRAFNIPVVELQGYEADDLIGTL 117 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 E G V +++ DKDLMQ+V+ T L DT+K I V +++G+ PE ++ + Sbjct: 118 AARWEATGGQVVVVTGDKDLMQIVTEQTTLLDTMKNVTSAIPQVHERFGVGPEGVIDILG 177 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS DNIPG+PGIG KTA L+Q++G+++N+L A+ + K E + E++E ARLSR Sbjct: 178 LAGDSSDNIPGVPGIGEKTAIKLVQQFGSMDNLLERAAEVP-GKVGEKLREFSEQARLSR 236 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 L + DVP + + L+ ++ + RL K F LI + Sbjct: 237 TLATIIKDVPYELHPDQLLAQEPDTERLNELFKLYGFHTLIKEM 280 >gi|116872994|ref|YP_849775.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741872|emb|CAK20996.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334] Length = 875 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 226/552 (40%), Positives = 327/552 (59%), Gaps = 19/552 (3%) Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 FI L++H+ Q + T E +++ E+ K+ ++ K + ++R G ++ G Sbjct: 332 FIGLAIHSDQGTYFFTKETAENSVSFREWVESAQ-TKVVYDAKKTMVAMNRMGFAISGIT 390 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541 DIML SY+L+ S D S+A + YT E K K S P +S V H Sbjct: 391 FDIMLASYLLNPSDSIDDFTSVAVRH-DYTEVETDEAVYGKGAKRSTP----EESIVAGH 445 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 + I +L L L + L + E L+ P+ V++QME+ G+ +D + L+ + E Sbjct: 446 LARKAVAIAELEKRLVDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTERLENMKVE 505 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 ++ L +LE +I+ L+GE+FN++SPKQLG ILF KL+ P KTKTG + T A LE + Sbjct: 506 LAGRLKTLETSIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTG-YSTAADVLESL- 563 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 G + II IL +RQL KI+STY + L +K T +VHT ++ T TGRL+S++PNLQ Sbjct: 564 SGKHDIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 623 Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 NIPI+ + G+KIR+ F+ S P K+ SADYSQ+ELR+LAHI++ L F++ DIH Sbjct: 624 NIPIRLEEGRKIRQVFVPSKPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A ++F V E+V MRR AK +NF I+YGIS + L+ L I R +A D+I RYF +P Sbjct: 684 TAMDVFHVEQEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYP 743 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 + EY+ F ++ GYVETI RR + EI S ++R ER A+N PIQGSAADI Sbjct: 744 AVKEYMHDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 803 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 ++AMI + + LE +L K+LLQ+HDEL+FE PE EI +I+ ME A + L V Sbjct: 804 KKAMILMSERLESEQLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 859 Query: 961 PLKVNIKVSNNW 972 PLKV+ + W Sbjct: 860 PLKVDSAFGDTW 871 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 114/289 (39%), Positives = 160/289 (55%), Gaps = 10/289 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S RAFYA PLL+ G+ NA+ GF ML +L+ + SH V Sbjct: 2 NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + YK R K P L Q P +R A+ IP E+ +EADDII T Sbjct: 57 FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 T AE +G V II+ D+DL QL S T +Y T K E E + +K+ + P +++ Sbjct: 117 TKQAEADGLEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPTQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239 ++ L GDS DNIPGIPG+G KTA LL E+G +E++L +A I KK +E +LE E Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKEL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 A LS++L + + PI +E + ++I LK + FT L+ + Sbjct: 237 AVLSKELATINVNSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNI 285 >gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR] gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR] Length = 886 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 209/508 (41%), Positives = 312/508 (61%), Gaps = 24/508 (4%) Query: 467 HNIKYDKLVLHRYGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 H+ K ++L R G +R D ML +Y+LD S+ D+A+++ K+L Sbjct: 393 HDAKRTDILLRRLGNKPVRAGFDTMLAAYLLDPSVSNLDLAALSIKYLG----------- 441 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 ++S + +++IL+L +L KL +L +Y ++ P++ +++ ME Sbjct: 442 -----QELSPGEDYRSFCAQADIILRLVPVLHEKLAELNMLDLYFDVEMPLLHILADMEF 496 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 +G+++D++ L+ +S ++S + + +IY L+GE+FN++S +QLG ILF KL P KT Sbjct: 497 SGVKLDKEYLEAMSVDLSTEIDRITGDIYRLAGEEFNINSTRQLGTILFEKLGLPVIKKT 556 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTG + T + LE + + I+ +L +RQL K+KSTY D L IN T +VHT ++ Sbjct: 557 KTG-YSTDVEVLETL-AERHEIVARVLHYRQLVKLKSTYVDGLIPLINPVTGKVHTTFNQ 614 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKI 764 T TGRL+S EPNLQNIPI+ + G++IR+AF+ S P ++SADYSQIELRILAH++ Sbjct: 615 TVTATGRLSSTEPNLQNIPIRMEEGRRIRKAFVPSEPGWIILSADYSQIELRILAHLSGD 674 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 Q F N DIH AAE+FGV++E+V+ +MR AK +NF I+YGIS F LA + + Sbjct: 675 ERFVQAFRNDEDIHTRTAAEVFGVSLEEVTGEMRSRAKAVNFGIVYGISDFGLAKNISVS 734 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R EA YI+ YF R+ GI +Y+E+T R+ GYV T+ RR + +I SP +IR+ E Sbjct: 735 RKEARQYIENYFARYAGIKKYLEETVRLAREQGYVTTLLNRRRYLPDILSPNRNIRSFGE 794 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R A+N PIQGSAADI + AM+ V L+ L +MLLQ+HDEL+FE P EE+ + I+ Sbjct: 795 RTAMNTPIQGSAADIIKLAMVRVADCLKKEGLKARMLLQVHDELIFEAPPEELPKVTGIV 854 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972 ME + L VPLKV++K NW Sbjct: 855 RECMENT----VKLTVPLKVDMKKGFNW 878 Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 117/285 (41%), Positives = 173/285 (60%), Gaps = 10/285 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + ++DG+S +YRAFYA PLL + G+ NA+ GF ML K+L + + A+ Sbjct: 3 QGKFIIIDGNSLVYRAFYALPLL-KTTTGVYTNAVYGFTTMLMKVLNEEK----PACLAI 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRNE + DYK +R P+ L PQ PLV+ +AF IP EI+G+EADDII T Sbjct: 58 AFDKGKTTFRNEHFEDYKGHRKATPDELKPQFPLVKEIVRAFRIPVYEIEGYEADDIIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 + AE+ G+ I++ D+D +QLVSP T + T K E D V +++G+ P ++ Sbjct: 118 VSLKAEEMGYETVIVTGDRDALQLVSPKTRVMLTKKGISEMELYDENKVAERYGLKPAQI 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD+ DNIPG+PGIG KTAA L++EYG++E +L + K RE + +YAE Sbjct: 178 IDMKGLMGDTSDNIPGVPGIGEKTAAKLVREYGSVEELLAQRGTV-AGKLREKLEQYAEQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 A LS+KL + VPI I L ++E+ + +L+ ++LEF L Sbjct: 237 ALLSKKLATIIRHVPIEIDLRECVVEEPDYAKLLELGRSLEFKAL 281 >gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] Length = 897 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 202/528 (38%), Positives = 334/528 (63%), Gaps = 10/528 (1%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507 +L +K+ E+E KIGH+IK++ + + I M+ D M+ Y++D +SS+ + Sbjct: 372 LLIQIKEVLEDEEIHKIGHDIKHEIRHFYVHDIEMKNVTFDTMIGEYLIDPAKSSYALKD 431 Query: 508 IAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 +A +++ + +E+ K+ I I + + ++ + +VI +++ ++ K+ + Sbjct: 432 LAAQYIGQEVMSEEELRGKGKNLISIGEAPKEDLMKYLCQRVSVIGKIYPEIKAKMQELE 491 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L +Y ++ P+++V++ ME GI++D+ +L+ + E + + L + I++L+ FN++ Sbjct: 492 LEKLYYEVELPLVEVLAAMEYKGIKVDRSMLEILEIEFGEQIDLLTKAIHELAETNFNIN 551 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG++LF KL+ P KTKTG + T A+ LE++ + II ILE+RQ++K+KSTY Sbjct: 552 SPKQLGEVLFEKLELPPIKKTKTG-YSTNAEVLEKLQ-DQHDIIPKILEYRQVTKLKSTY 609 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 D L N IN T R+H+ ++ T TGR++S EPNLQNIPIK ++G+++R+ F++ + Sbjct: 610 VDGLLNIINPETGRIHSNFNQTVTTTGRISSTEPNLQNIPIKLEMGRRLRKVFVANENHQ 669 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 I ADYSQ+ELR+LAHI + L F + DIH AAEIF V +E+V+ MR AK + Sbjct: 670 FIDADYSQVELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFDVPMEEVTDSMRSSAKAV 729 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R +A YI Y ++P + Y+++ Q GYV T+F Sbjct: 730 NFGIVYGISDYGLSQNLNITRVKAKKYIDNYLDKYPSVKRYMDEIVEQAHQQGYVVTLFN 789 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + E+ S +IR+ ER A+N PIQGSAADI + AM++V++ L++ L +K++LQ+ Sbjct: 790 RRRYLPELKSRNFNIRSFGERMAMNTPIQGSAADIIKIAMVNVYRRLKEQGLTSKLILQV 849 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+ E P+ E+ A +I+ SME+A +NL+V LKV++ +NNW Sbjct: 850 HDELIVEAPDNEVEVAIKIVRESMEEA----MNLKVQLKVDLAYANNW 893 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/286 (38%), Positives = 168/286 (58%), Gaps = 9/286 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + ++DG+S I RAFYA P L+ K +G NAI GF ML K++ + + I+ V FD Sbjct: 6 MVIIDGNSLINRAFYALPPLTNK-EGQHTNAIYGFMTMLLKVMDDYDPQYIS----VAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ + YKA R K+P L QL ++ AF I +EI GFEADD+I T + Sbjct: 61 RKAPTFRHKSFEGYKAGRKKMPPELAEQLEPLKEVLDAFHIYRVEIDGFEADDLIGTLSK 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AE++ I++ DKD +QL S + T K E D + +++++ + PE+ + L Sbjct: 121 YAEEQDIECLIVTGDKDALQLASEKVKILFTKKGISSLEIYDPQKIMEQYEVTPEQFIDL 180 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD+ DNIPGIPG+G KTA LL+++G +EN++ NA I +K RE + E A + Sbjct: 181 KGLMGDNSDNIPGIPGVGEKTAIKLLKQFGTVENLIQNAGEISAQKLREKVENNTEQAMM 240 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 S++L + T+VP+ I LE L + ++++ K EF LI RV Sbjct: 241 SKRLATIMTNVPVEIELEKLKKIAIDEEKVLALFKKFEFNTLIGRV 286 >gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901] gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901] Length = 831 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 192/409 (46%), Positives = 276/409 (67%), Gaps = 7/409 (1%) Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 ++ ++ P+ V++QME TGIQ+D++ LK++S E+ + + L IY L+GE+FNL+SP Sbjct: 427 RLFYEIELPLTPVLAQMEHTGIQVDREALKEMSLELGEQIEELIREIYVLAGEEFNLNSP 486 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 +QLG ILF KL P KTKTG + T A+ LE++ + II IL +RQL K+KSTY D Sbjct: 487 RQLGVILFEKLGLPVIKKTKTG-YSTDAEVLEEL-LPFHEIIGKILNYRQLMKLKSTYTD 544 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745 L IN+RT ++HT ++ T+TGRLAS EPNLQNIPI+ +LG+K+R+ FI SP + Sbjct: 545 GLMPLINERTGKLHTTFNQTGTLTGRLASSEPNLQNIPIRLELGRKLRKMFIPSPGYDYI 604 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 +SADYSQIELR+LAH ++ L + ++ DIHR A+E+FGV++E+V+P+MR HAK++N Sbjct: 605 VSADYSQIELRLLAHFSEEPKLIEAYQKGEDIHRKTASEVFGVSLEEVTPEMRAHAKSVN 664 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS F L L+IPR A YIK YF +P + EY+++ R+ GYV T+FGR Sbjct: 665 FGIVYGISDFGLGRDLKIPREVAGKYIKNYFANYPKVREYLDELVRTAREKGYVTTLFGR 724 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + E++S +++ ER A+N P+QGSAADI + AMI+V K L+ KL +++LL +H Sbjct: 725 RRYIPELSSKNRTVQGFGERTAMNTPLQGSAADIIKLAMINVEKELKARKLKSRLLLSVH 784 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DELV EVP EE+ ++ ME + L+VPL + NW E Sbjct: 785 DELVLEVPAEELEEVKALVKGVMESV----VELKVPLIAEVGAGKNWYE 829 Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 101/284 (35%), Positives = 167/284 (58%), Gaps = 10/284 (3%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 LVDG+S ++RAF+A P L + G P A+ GF ML++++++ + E + AV FD Sbjct: 6 LVDGNSLLHRAFFALPPL-KTTKGEPTGAVYGFLTMLFRVIKDEKPE----YLAVAFDIS 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR E + YK +R + P+ L+PQ LVR + +P IE+ G+EADDII + Sbjct: 61 RKTFRTEQFTAYKGHRKEAPDELVPQFALVREVLKVLNVPYIELDGYEADDIIGHLSRAF 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQA 184 +G V I + D+D++QLV T +Y T K K+D+ +++ +G+ P+++V ++ Sbjct: 121 AGQGHEVVIYTADRDMLQLVDEKTVVYLTKKGITELVKMDLAAILENYGLKPKQLVDVKG 180 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD DNIPG+PGIG KTA L++ YG++E +L + +K K RE + E+ A++S+ Sbjct: 181 LMGDPSDNIPGVPGIGEKTALDLIKTYGSVEEVLAHKDELK-PKLREKLAEHENLAKISK 239 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +L + ++P+ I LE L +++ N + LEF + + Sbjct: 240 QLATILREIPLEISLEDLKVKEPNYEEVAKLFLRLEFKSFLKEI 283 >gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10] gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10] Length = 893 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 219/620 (35%), Positives = 366/620 (59%), Gaps = 38/620 (6%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-E 425 Y + + + ++ V+KL+ S + + T ++D F I++S FK E Sbjct: 297 GYRIVKDPVEFEKLVEKLKETPSFAIDLETSSLDPFDCDIAGISVS---------FKPKE 347 Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MR 484 +I L +Q N KE+L LK+ E+ +G N+K+D VL G+ + Sbjct: 348 AYYIPLHHRNAQ-----NLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVP 402 Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRKS--------SIPIDKIS 534 D M+ +Y+++ ++ +A K+L Y T + L S S +P++K + Sbjct: 403 PHFDTMIAAYLIEPNEKKFNLDDLALKFLGYKMTSYQELMSFSSPLFGFSFVDVPLEKAA 462 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + ++ E++++ +L+ L KL L +V+ +++ P++ V+++ME+ G+ +D + Sbjct: 463 N-----YSCEDADITYRLYKTLSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEF 517 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653 LK++S E K L L E IY ++GE FN++SPKQ+ ILF KL P G TKTG + T Sbjct: 518 LKKLSEEYGKKLEELAEEIYRIAGEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTR 577 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + LE++ G++ II ILE+R++ K+KSTY D+LP +N +T R+H ++ T TGRL Sbjct: 578 IEVLEEL-AGEHEIIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRL 636 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 +S +PNLQN+P K++ G++IR+A + P ++SADYSQIELRILAH++ L + FE Sbjct: 637 SSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFE 696 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 +D+H + A+ IF V E+V+ +MRR K +NFSIIYG++P+ L+ +L +P EA I Sbjct: 697 EGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMI 756 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF +P + +YI++ + ++ GYV T+FGR+ ++ + + + ER AIN PI Sbjct: 757 VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAINTPI 816 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI + AMI + + L++ K+ +KM++Q+HDELVFEVP+EE +++ M Sbjct: 817 QGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPDEEKDALVELVKDRM---- 872 Query: 953 LPKINLRVPLKVNIKVSNNW 972 + + L VPL+V++ + W Sbjct: 873 MNVVKLSVPLEVDVTIGKTW 892 Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 107/261 (40%), Positives = 156/261 (59%), Gaps = 6/261 (2%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LFL DG++ YRA+YA G+P NA G ML + +++ + AV F Sbjct: 3 RLFLFDGTALAYRAYYALDRSLSTSAGIPTNATYGVARMLVRFIKDHIIVG-KDYTAVAF 61 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR+++ YKA RPK P++L+ QLP ++ +A G+ +EI+G+EADDIIAT Sbjct: 62 DKRAATFRHKLLETYKAQRPKTPDLLIQQLPYIKRLVEALGMKVLEIEGYEADDIIATLA 121 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 + I++ DKD++QLV+ ++ VK E D + V +K+G+ P ++ Sbjct: 122 VKGLSLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPHQIPD 181 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L ALTGD IDNIPG+ GIG KTA LL++Y +LE+IL + + QK R+ +L E+A Sbjct: 182 LLALTGDEIDNIPGVTGIGEKTAVQLLEKYKDLEDILNHVRELPQKLRK-ALLRDRESAV 240 Query: 242 LSRKLVMLRTDVPITIPLEHL 262 LS+KL +L T+VPI I E L Sbjct: 241 LSKKLAILETNVPIEINWEEL 261 >gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa] gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii] gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa] Length = 875 Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust. Identities = 215/496 (43%), Positives = 301/496 (60%), Gaps = 33/496 (6%) Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542 ++ ED+ LM Y L +G S ++ KE+LK ++ ++ Sbjct: 407 IKAIEDLELMQYALSAGLSQKNLF-----------KEVLK------------ETWIENII 443 Query: 543 IENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 IE++ +++ L + +L K +Y +D P+ ++ +ME GI +D + LKQ+S Sbjct: 444 IESAKIVINFITLYKQTIWELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYLKQLS 503 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLE 658 AE +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A K + T A+ LE Sbjct: 504 AEFGTEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILE 563 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 +++ I +L WRQL+K+K+TY DSLP I+ T RVHT + ST TGRL+S EP Sbjct: 564 KLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEP 623 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQN+PI++ G +IR+AFI+ KLISADYSQIELRIL+HIA I L Q F N DIH Sbjct: 624 NLQNVPIRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIH 683 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 A +IF + +++ + RR AK INF IIYGIS F LA QL + EA+ YIK+YF Sbjct: 684 TQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTHGEASAYIKKYFAE 743 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 + G+ EY+E+TK F NGYV FGR+ I+ K ++ ERAAINAPIQG+ AD Sbjct: 744 YKGVQEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNAD 801 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I + AMI++ + +E KL T+++LQIHDEL+FE P +E+ + II ME + N+ Sbjct: 802 IIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NM 857 Query: 959 RVPLKVNIKVSNNWQE 974 VP+ I+ NNW E Sbjct: 858 DVPIITEIRAGNNWME 873 Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 123/294 (41%), Positives = 176/294 (59%), Gaps = 7/294 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M ++N L L+DG F++RA+YA PL S K G PV A+ GF +ML KLL + + + Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLSDFKPK---- 54 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD FR++IYPDYKANRP PE L+ QLPLVR P +E G+EADD Sbjct: 55 HVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADD 114 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IIAT+ G V IIS+DKDL+QL++ +YD +K + I + V+KK+G +K+ Sbjct: 115 IIATFATKTAALGEHVVIISSDKDLLQLMTENIKIYDPLKGKYITEDDVVKKFGTTSDKL 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GD DNIPG+P IG KTA+ L+ ++G++ENI + ++ K+R+ + ET Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRKTLQNSRET 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 A +S +L+ L ++V + L +L N +L FL+ F L RV D Sbjct: 235 ALISWQLIGLNSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288 >gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1] gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1] Length = 893 Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust. Identities = 220/620 (35%), Positives = 364/620 (58%), Gaps = 38/620 (6%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-E 425 Y + + + ++ V+KL+ S + + T ++D F I++S FK E Sbjct: 297 GYRIVKDPVEFEKLVEKLKETPSFAIDLETSSLDPFECDIAGISLS---------FKPKE 347 Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MR 484 +I L +Q N KE+L LK+ E+ +G N+K+D VL GI + Sbjct: 348 AYYIPLHHRNAQ-----NLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGIEPVP 402 Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRKS--------SIPIDKIS 534 D M+ +Y+++ ++ +A K+L Y T + L S S +P++K + Sbjct: 403 PHFDTMIAAYLIEPNEKKFNLDDLALKFLGYKMTSYQELMSFSSPLFGFSFVDVPLEKAA 462 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + ++ E++++ +L+ L KL L +V+ +++ P++ V+++ME+ G+ +D + Sbjct: 463 N-----YSCEDADITYRLYKTLSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEF 517 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTT 653 LK++S E K L L E IY ++GE FN++SPKQ+ ILF KL P G TKTG + T Sbjct: 518 LKKLSEEYGKKLEELAEEIYRIAGEPFNINSPKQVSRILFEKLGIKPRGKTTKTGDYSTR 577 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 + LE++ G++ II ILE+R++ K+KSTY D+LP +N +T R+H ++ T TGRL Sbjct: 578 IEVLEEL-AGEHEIIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRL 636 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 +S +PNLQN+P K++ G++IR+A + P ++SADYSQIELRILAH++ L + FE Sbjct: 637 SSSDPNLQNLPTKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFE 696 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 +D+H + A+ IF V E+V+ +MRR K +NFSIIYG++P+ L+ +L +P EA I Sbjct: 697 EGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMI 756 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF +P + +YI++ + ++ GYV T+FGR+ ++ + + + ER AIN PI Sbjct: 757 VNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAINTPI 816 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI + AMI + + L++ K+ +KM++Q+HDELVFEVP EE +++ M Sbjct: 817 QGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPNEEKDALVELVKDRMTNV- 875 Query: 953 LPKINLRVPLKVNIKVSNNW 972 + L VPL+V++ + W Sbjct: 876 ---VKLSVPLEVDVTIGKTW 892 Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 107/261 (40%), Positives = 156/261 (59%), Gaps = 6/261 (2%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LFL DG++ YRA+YA G+P NA G ML + +++ + AV F Sbjct: 3 RLFLFDGTALAYRAYYALDRSLSTSAGIPTNATYGVARMLVRFIKDHIIVG-KDYAAVAF 61 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR+++ YKA RPK P++L+ QLP ++ +A G+ +EI+G+EADDIIAT Sbjct: 62 DKRAATFRHKLLETYKAQRPKTPDLLIQQLPYIKRLVEALGMKVLEIEGYEADDIIATLA 121 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 + I++ DKD++QLV+ ++ VK E D + V +K+G+ P ++ Sbjct: 122 VKGLSLFDEIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGVEPHQIPD 181 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L ALTGD IDNIPG+ GIG KTA LL++Y +LE+IL + + QK R+ +L E+A Sbjct: 182 LLALTGDEIDNIPGVTGIGEKTAVQLLEKYRDLEDILNHIHELPQKTRK-TMLRDRESAI 240 Query: 242 LSRKLVMLRTDVPITIPLEHL 262 LS+KL +L T+VPI I E L Sbjct: 241 LSKKLAILETNVPIEINWEEL 261 >gi|58584982|ref|YP_198555.1| DNA polymerase I [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419298|gb|AAW71313.1| DNA polymerase I, PolA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 849 Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust. Identities = 211/511 (41%), Positives = 308/511 (60%), Gaps = 33/511 (6%) Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 LKI H+ + + + + +D+M+MSY LD+G+ H I +I LS + Sbjct: 364 LKIIHDTRETRKTIPTIEKVLGSVDDLMIMSYSLDTGKHDHSIPNIIAHNLSENVETF-- 421 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 S K+ I I + L+ +L EKL +YER DKP++ V+ Sbjct: 422 SAKTLIAIHE----------------------KLKQRLFKEKLFTIYERFDKPLMKVIFN 459 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI ++ L+++S + + + LE +IY+L+GEKFN++SPKQL D+LF K+ Sbjct: 460 MEKNGILLNIHKLQELSDKFQQLIAVLENDIYNLAGEKFNIASPKQLSDVLFNKMGLNKK 519 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 K K+G + T + LE++ I IL+WR LSK+KSTY D+L ++ R+HT Sbjct: 520 KKLKSGSYSTNSVVLEELEIEGVEIASKILDWRHLSKLKSTYTDALIKQVDPLDGRIHTN 579 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 +S T TGRL+S PNLQNIPI++ G IR+ FI+P K+ISADYSQIELR+LAH+A Sbjct: 580 FSTTVTATGRLSSSSPNLQNIPIRSKEGNLIRQTFIAPKGYKIISADYSQIELRLLAHVA 639 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQL 821 +T + F N DIH + A ++FGV + +V Q+RR AK+INF I+YGIS F LA +L Sbjct: 640 NVTAFKEAFANGKDIHGITAGQVFGVQKDMEVDEQLRRKAKSINFGIMYGISQFGLAKRL 699 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I EAA+YI YF +P I Y+EK + RQ+GYVET+FGRR +IN+ +R Sbjct: 700 GITIEEAAEYINYYFSCYPEIKVYMEKVVSTARQHGYVETLFGRRCFVKDINNTIPYLRQ 759 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ERAAINAP+QG+AADI + AMI + L+ A K++LQ+HDEL+ EV E++ + Sbjct: 760 FAERAAINAPLQGTAADIIKCAMIQLFDQLK----AGKIILQVHDELLVEVENEKVQETA 815 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ ME + + +PL+V +K+S+NW Sbjct: 816 KLMKDVMENI----VKISIPLEVEVKISDNW 842 Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/289 (40%), Positives = 172/289 (59%), Gaps = 9/289 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 MQK+ ++DG F++ A+Y L+ G+P+ A+ GF NM+ K + +S + Sbjct: 1 MQKKT-FTIIDGYGFLFGAYYVLHHLTTT-TGMPIGAVYGFLNMVLKYITHS------DY 52 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 + D FR+++YP+YKANR PE L+PQ ++R A +AF + EI+G+EADDI Sbjct: 53 LTIALDSGKKNFRHDLYPEYKANRVTPPEGLIPQFTILREAIEAFNLSYEEIEGYEADDI 112 Query: 121 IATYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IAT T A + V IIS+DKDL QL++ ++D +K ID + VI+K+G+ K+ Sbjct: 113 IATLTAKYANHQDLKVVIISSDKDLFQLLNYDVLIFDPIKNIYIDEKQVIEKFGVNSNKL 172 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L +LTGD DNIPG+PGIG KTAA LL + +L N + N + IKQ + R + E+ E Sbjct: 173 LDLFSLTGDVSDNIPGVPGIGPKTAAKLLDRFNSLNNTIENINNIKQTRTRNILTEHKEK 232 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 A +SRKL+ L V + + + N +L+SFLK EF LI +V Sbjct: 233 ALISRKLLSLCEKVDLQHDVIKYKVLSPNMEKLLSFLKKYEFNSLIGKV 281 >gi|313637951|gb|EFS03259.1| DNA polymerase I [Listeria seeligeri FSL S4-171] Length = 567 Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust. Identities = 227/552 (41%), Positives = 326/552 (59%), Gaps = 19/552 (3%) Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 FI L++H+ + + T E K++ E++ K+ ++ K + +HR G ++ G Sbjct: 24 FIGLTIHSDKGTYFFTKETAENSPAFKEWVESDAS-KVVYDAKKTMVAMHRLGYTVSGIT 82 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541 DIML SY+L+ S D S+A + YT E K K S P +S V H Sbjct: 83 FDIMLASYLLNPSDSIADFTSVAIRH-DYTEVETDEAVYGKGAKRSTP----EESIVAPH 137 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 + I L L L + L + E L+ P+ V++QME+ G+ +D L+ + E Sbjct: 138 LARKAVAIAVLEKRLLDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTKRLEDMKVE 197 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 ++ L +LEE+I+ L+GE+FN++SPKQLG ILF KL P+ KTKTG + T A LE + Sbjct: 198 LAGRLKTLEESIHSLAGEEFNINSPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL- 255 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 G + II IL +RQL KI+STY + L +K T +VHT ++ T TGRL+S++PNLQ Sbjct: 256 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 315 Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 NIPI+ + G+KIR+ F+ S P K+ SADYSQ+ELR+LAHI++ L F++ DIH Sbjct: 316 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 375 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A ++F V E+V MRR AK +NF I+YGIS + L+ L I R +A D+I RYF +P Sbjct: 376 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYP 435 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 + EY++ F ++ GY ETI RR + EI S ++R ER A+N PIQGSAADI Sbjct: 436 AVKEYMQDIVRFAKEKGYXETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 495 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 ++AMI + L+ KL K+LLQ+HDEL+FE PE EI +I+ ME A + L V Sbjct: 496 KKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 551 Query: 961 PLKVNIKVSNNW 972 PLKV+ + W Sbjct: 552 PLKVDSAFGDTW 563 >gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2] gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis] gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2] Length = 922 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 220/518 (42%), Positives = 305/518 (58%), Gaps = 38/518 (7%) Query: 487 EDIMLMSYVLDSGRSSH-------------------------DIASIAQKWLSYTRKEIL 521 ED+ LM Y L +G S D ++A R++ Sbjct: 411 EDLELMQYALSAGLSQKNLFEEALKEDNRHLSKPAYREEFKGDTEALATAAYKSVREDAS 470 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE----KLLHVYERLDKPMI 577 S +P++ + + I S I+ + L + I+E K +Y +D P+ Sbjct: 471 TGSTSKLPLE--TKFGKMSNVINESARIVAEFTSLYKQNILELKDNKAFRLYSNIDLPIC 528 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 ++ +ME GI++D + L Q+SAE +L LEE I+ LSG KFN+ SPKQLG+ILF K+ Sbjct: 529 FILDKMEKIGIKVDANYLNQLSAEFGAEILKLEEEIFALSGTKFNIGSPKQLGEILFEKM 588 Query: 638 KFPSG-AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 + P G A K + T A+ LE+++ I +L WRQL+K+K+TY DSLP I+ T Sbjct: 589 QLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNIT 648 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 RVHT + ST TGRL+S EPNLQN+PI++ G KIR+AFI+ KLISADYSQIELR Sbjct: 649 HRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEGYKLISADYSQIELR 708 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 IL+HIA I L Q F N DIH A +IF + +++ + RR AK INF IIYGIS F Sbjct: 709 ILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFG 768 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 LA QL + EA++YIK+YF + G+ EY+E+TK F NGYV FGR+ I+ K Sbjct: 769 LAKQLNVSNGEASEYIKKYFAEYKGVQEYMEQTKAFASSNGYVINFFGRKCFVPLIHDKK 828 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 ++ ERAAINAPIQG+ ADI + AMI++ + +E + L T+++LQIHDEL+FEVPE+E Sbjct: 829 --LKQFAERAAINAPIQGTNADIIKIAMINLDQEIEKNNLKTRLVLQIHDELLFEVPEDE 886 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + II ME + N+ VP+ I+V NNW E Sbjct: 887 VELVTPIIKKIMENST----NMDVPIITEIRVGNNWME 920 Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 126/321 (39%), Positives = 186/321 (57%), Gaps = 8/321 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M ++N L L+DG F++RA+YA PL S K G PV A+ GF +ML KLL + + + Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFASMLLKLLSDFKPK---- 54 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD FR+ IYP+YKANRP PE L+ QLPLVR P +E G+EADD Sbjct: 55 HVAVVFDSGGKNFRHHIYPEYKANRPPPPEDLVVQLPLVRDVASNLNFPILEKNGYEADD 114 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IIAT+ G V +IS+DKDL+QL+ +YD +K + I + V+KK+G +K+ Sbjct: 115 IIATFAAKTAALGEDVVVISSDKDLLQLMGENIKIYDPLKGKYITEDDVVKKFGTTSDKL 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GD DNIPG+P IG KTA+ L+ ++G++ENI + ++ K+RE + E Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLEQVSSLKQRETLQNSKEA 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A +S +L+ L ++V + L +L N +L FL+ F L R +D + Sbjct: 235 ALISWQLIGLDSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFKSLYKRAENLFDIKINDH 294 Query: 300 EPVVLDINTTENKGIAIETEI 320 + +V + TE K I+ +E+ Sbjct: 295 KEIVEN-KVTEAKEISNASEL 314 >gi|315303334|ref|ZP_07873960.1| DNA polymerase I [Listeria ivanovii FSL F6-596] gi|313628295|gb|EFR96802.1| DNA polymerase I [Listeria ivanovii FSL F6-596] Length = 875 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 227/552 (41%), Positives = 326/552 (59%), Gaps = 19/552 (3%) Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 FI L++H+ + + T E K++ E++ K+ ++ K + +HR G ++ G Sbjct: 332 FIGLTIHSDKGTYFFAKETAENSPAFKEWIESDAS-KVVYDAKKAMIAMHRLGYAVSGIT 390 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----LKSRKSSIPIDKISDSQVQEH 541 DIML SY+L+ S D S+A + YT E K K S P +S V H Sbjct: 391 FDIMLASYLLNPSDSIDDFTSVAIRH-DYTEVETDEAVYGKGAKRSTP----EESVVAPH 445 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 + I L L L + L + E L+ P+ V++QME+ G+ +D L+ + E Sbjct: 446 LARKAVAIAILEKRLLDDLEKNEQLALMEDLELPLTFVLAQMEMQGVSVDTKRLEDMKVE 505 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 ++ L +LEE+I+ L+ E+FN++SPKQLG ILF KL P+ KTKTG + T A LE + Sbjct: 506 LAGRLKTLEESIHSLAEEEFNINSPKQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL- 563 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 G + II IL +RQL KI+STY + L +K T +VHT ++ T TGRL+S++PNLQ Sbjct: 564 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 623 Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 NIPI+ + G+KIR+ F+ S P K+ SADYSQ+ELR+LAHI++ L F++ DIH Sbjct: 624 NIPIRLEEGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 683 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A ++F V E+V MRR AK +NF I+YGIS + L+ L I R +A D+I RYF +P Sbjct: 684 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYP 743 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 + EY++ F ++ GYVETI RR + EI S ++R ER A+N PIQGSAADI Sbjct: 744 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 803 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 ++AMI + L+ KL K+LLQ+HDEL+FE PE EI +I+ ME A + L V Sbjct: 804 KKAMILMSDRLKSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 859 Query: 961 PLKVNIKVSNNW 972 PLKV+ + W Sbjct: 860 PLKVDSAFGDTW 871 Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/309 (37%), Positives = 170/309 (55%), Gaps = 10/309 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S RAFYA PLL+ G+ NA+ GF ML +L+ + SH V Sbjct: 2 NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + YK R K P L Q P +R A+ IP E+ +EADDII T Sbjct: 57 FDAGKTTFRHATFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 T AE +G V II+ D+DL QL S T +Y T K E E + +K+ + P +++ Sbjct: 117 TKKAEADGLEVAIITGDRDLTQLASDKTTVYITKKGIADMETNTPETLKEKYNLTPAQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEY-GNLENILINASRIKQKKRRENILEYAET 239 ++ L GDS DNIPGIPG+G KTA LL E+ G++E++L +A I KK +E +LE E Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGSVESVLEHADEISGKKLKEKVLENKEL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS++L + D PI +E + ++I LK ++FT L+ + +A + Sbjct: 237 AILSKELATINVDSPIECTIESTKYDGYQTEKVIPLLKEMQFTTLLKNIEGDTPEEAKEL 296 Query: 300 EPVVLDINT 308 + + ++ T Sbjct: 297 KELTFEVVT 305 >gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2] gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2] Length = 879 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 217/528 (41%), Positives = 331/528 (62%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K++ E+E K + K + L GI ++G E D++L +Y+++ G S D+AS+A++ Sbjct: 360 FKEWAEDESKKKWVFDAKRAAVALRWRGIELKGAEFDVLLAAYIINPGHSYDDVASVAKE 419 Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 +S K K ++P +K ++ +H + I L L +L + L Sbjct: 420 HQLHIVSADEAVYGKGAKQAVPDEK----ELADHLARKAKAISLLREKLLDELEENEQLE 475 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++E L+ P+ ++ +ME G+Q+D D LK++ E+S L E+ I++ +GE FN++SPK Sbjct: 476 LFEALEMPLAHILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHESAGETFNINSPK 535 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+A LE++ + II++IL +RQ+ K++STY + Sbjct: 536 QLGVILFEKLGLPVVKKTKTG-YSTSADVLEKLR-DKHVIIEDILHYRQIGKLQSTYVEG 593 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L I K + +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P++K Sbjct: 594 LLKVIKKDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSQKGWL 651 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHI+K L + F N +D+H A ++F V+ E+V+P MRR AK + Sbjct: 652 IFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEEEVTPAMRRQAKAV 711 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R EAA +I+RYFH F G+ EY+E+T +Q GYV T+ Sbjct: 712 NFGIVYGISDYGLSQNLGITRKEAAAFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLS 771 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + E+ S ++R+ ER A+N PIQGSAADI ++AMI + L++ L K+LLQ+ Sbjct: 772 RRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMADKLKEKNLQAKLLLQV 831 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE PE+EI +++ ME A + L VPLKV+ +W Sbjct: 832 HDELIFEAPEDEIKVLEKLVPEVMEHA----LELDVPLKVDCASGPSW 875 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 113/292 (38%), Positives = 169/292 (57%), Gaps = 9/292 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDG+S YRAF+A PLLS + G+ NA+ GF +L K+L+ + +H Sbjct: 1 MTERKKLVLVDGNSLAYRAFFALPLLSNEK-GIHTNAVYGFTTILMKMLEEEK----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR++ + +YK R K P L QLP +R A+ I E++ +EADDI Sbjct: 56 MLVAFDAGKTTFRHKTFKEYKGGRQKTPPELSEQLPFIRELLDAYRISRYELENYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T AEK+GF V I S DKDL QL + T + T K E EHV +K+G+ P Sbjct: 116 IGTLAKSAEKDGFEVKIFSGDKDLTQLATEGTTVAITKKGITDVEYYTPEHVREKYGLTP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E+++ ++ L GDS DNIPG+PG+G KTA LL+++ +E +L + + KK +E + E+ Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFHTVEELLSSIDEVSGKKLKEKLEEF 235 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A +S++L + T+ P+ + L+ L E + ++ K L F L+ R+ Sbjct: 236 KEQALMSKELATITTEAPLEVSLDSLGYEGFDREAVVKIFKDLGFHSLLERI 287 >gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7] gi|81527867|sp|Q92GB7|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7] Length = 875 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 214/492 (43%), Positives = 299/492 (60%), Gaps = 33/492 (6%) Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 ED+ LM Y L +G S ++ KE+LK ++ ++ IE++ Sbjct: 411 EDLELMQYALSAGLSQKNLF-----------KEVLK------------ETWIENIIIESA 447 Query: 547 NVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 +++ L + +L K +Y +D P+ ++ +ME GI +D + LKQ+SAE Sbjct: 448 KIVINFIALYKQTIWELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYLKQLSAEFG 507 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINC 662 +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A K + T A+ LE+++ Sbjct: 508 TEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSE 567 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 I +L WRQL+K+K+TY DSLP I+ T RVHT + ST TGRL+S EPNLQN Sbjct: 568 HGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQN 627 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +PI++ G +IR+AFI+ KLISADYSQIELRIL+HIA I L Q F N DIH A Sbjct: 628 VPIRSSEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +IF + +++ + RR AK INF IIYGIS F LA QL + EA++YIK+YF + G+ Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGV 747 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 EY+E+TK F NGYV FGR+ I+ K ++ ERAAINAPIQG+ DI + Sbjct: 748 QEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNTDIIKI 805 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI++ + +E KL T+++LQIHDEL+FE P +E+ + II ME + N+ VP+ Sbjct: 806 AMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NMAVPI 861 Query: 963 KVNIKVSNNWQE 974 I+ NNW E Sbjct: 862 ITEIRAGNNWME 873 Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 123/294 (41%), Positives = 175/294 (59%), Gaps = 7/294 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M ++N L L+DG F++RA+YA PL S K G PV A+ GF +ML KLL + + + Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLSDFKPK---- 54 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD FR++IYPDYKANRP PE L+ QLPLVR P +E G+EADD Sbjct: 55 HVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADD 114 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IIAT+ G V IIS+DKDL+QL++ +YD +K + I + V+KK+G +K+ Sbjct: 115 IIATFATKTAALGAHVVIISSDKDLLQLMTENIKIYDPLKGKYITEDDVVKKFGTTSDKL 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GD DNIPG+P IG KTA+ L+ ++G++ENI + ++ K+RE + E Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREA 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 A +S +L+ L ++V + L +L N +L FL+ F L RV D Sbjct: 235 ALISWQLIGLNSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288 >gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52786786|ref|YP_092615.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52349288|gb|AAU41922.1| PolA [Bacillus licheniformis ATCC 14580] Length = 879 Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust. Identities = 217/528 (41%), Positives = 331/528 (62%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K++ E+E K + K + L GI ++G E D++L +Y+++ G S D+AS+A++ Sbjct: 360 FKEWAEDESKKKWVFDAKRAAVALRWRGIELKGAEFDVLLAAYIINPGHSYDDVASVAKE 419 Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 +S K K ++P +K ++ +H + I L L +L + L Sbjct: 420 HQLHIVSADEAVYGKGAKQAVPDEK----ELADHLARKAKAISLLREKLLDELEENEQLE 475 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++E L+ P+ ++ +ME G+Q+D D LK++ E+S L E+ I++ +GE FN++SPK Sbjct: 476 LFEALEMPLAHILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIHESAGETFNINSPK 535 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+A LE++ + II++IL +RQ+ K++STY + Sbjct: 536 QLGVILFDKLGLPVVKKTKTG-YSTSADVLEKLR-DKHVIIEDILHYRQIGKLQSTYVEG 593 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L I K + +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P++K Sbjct: 594 LLKVIKKDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSQKGWL 651 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHI+K L + F N +D+H A ++F V+ E+V+P MRR AK + Sbjct: 652 IFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEEEVTPAMRRQAKAV 711 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R EAA +I+RYFH F G+ EY+E+T +Q GYV T+ Sbjct: 712 NFGIVYGISDYGLSQNLGITRKEAAAFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLS 771 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + E+ S ++R+ ER A+N PIQGSAADI ++AMI + L++ L K+LLQ+ Sbjct: 772 RRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMADKLKEKNLQAKLLLQV 831 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE PE+EI +++ ME A + L VPLKV+ +W Sbjct: 832 HDELIFEAPEDEIKVLEKLVPEVMEHA----LELDVPLKVDCASGPSW 875 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 113/292 (38%), Positives = 169/292 (57%), Gaps = 9/292 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDG+S YRAF+A PLLS + G+ NA+ GF +L K+L+ + +H Sbjct: 1 MTERKKLVLVDGNSLAYRAFFALPLLSNEK-GIHTNAVYGFTTILMKMLEEEK----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR++ + +YK R K P L QLP +R A+ I E++ +EADDI Sbjct: 56 MLVAFDAGKTTFRHKTFKEYKGGRQKTPPELSEQLPFIRELLDAYRISRYELENYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T AEK+GF V I S DKDL QL + T + T K E EHV +K+G+ P Sbjct: 116 IGTLAKSAEKDGFEVKIFSGDKDLTQLATEGTTVAITKKGITDVEYYTPEHVREKYGLTP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E+++ ++ L GDS DNIPG+PG+G KTA LL+++ +E +L + + KK +E + E+ Sbjct: 176 EQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFHTVEELLSSIDEVSGKKLKEKLEEF 235 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A +S++L + T+ P+ + L+ L E + ++ K L F L+ R+ Sbjct: 236 KEQALMSKELATITTEAPLEVSLDSLGYEGFDREAVVKIFKDLGFHSLLERI 287 >gi|300173072|ref|YP_003772238.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811] gi|299887451|emb|CBL91419.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811] Length = 893 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 209/526 (39%), Positives = 326/526 (61%), Gaps = 15/526 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK EN +K NIK ++L R GI ++G + D +L+SY+LD+ + +++A++AQ+ Sbjct: 373 LKSVIENAGIIKNVFNIKAQLILLKRLGIKLKGTKFDFLLVSYLLDTTDNDNELATLAQR 432 Query: 512 W-LSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 + L T E + K K +IP D D++V H +++++Q+ L + H+ Sbjct: 433 FDLYMTSDEDIYGKGAKFAIPED---DARVLAHLANKADILMQVEQSAFDALQEHEQTHL 489 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 Y ++ P+ V++ ME GI+IDQ L+ + +++ + ++E+ IY +GEKFN++SPKQ Sbjct: 490 YTEIELPLAQVLADMEYQGIKIDQKRLRDIGSDLEGRIHAIEDAIYIEAGEKFNINSPKQ 549 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LG +LF K+ P +TKTG +TA D+ + PI+ +IL++RQL+K+KSTY + L Sbjct: 550 LGVLLFEKMGLPVVKRTKTGY--STAVDVLEKLAAQAPIVDHILQYRQLAKLKSTYVEGL 607 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747 ++ + ++HT + T TGRL+S++PNLQNIP++T+ G++IR AF+ S P +++ Sbjct: 608 LTVVHDQDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRTEEGRQIRTAFVPSEPNWQIVG 667 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINF 806 ADYSQIELR+LAH+ + + F N DIH A +FG+ + V MRR AK +NF Sbjct: 668 ADYSQIELRVLAHMTGDKNMQRAFLNGEDIHAETARAVFGLKDDAPVDALMRRTAKAVNF 727 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YGIS F LA L I R EA +I YF FP IH ++ K K + G+VETI RR Sbjct: 728 GIVYGISDFGLANNLGISRGEAKSFIDTYFKEFPQIHAWMAKIKEIAHEQGFVETIAKRR 787 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + EI S ++R+ ER A+N+PIQGSAADI + AMI V +L++H + +MLLQ+HD Sbjct: 788 RYLPEIGSKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVADALQEHHMQARMLLQVHD 847 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EL+FE P +EI ++++ + M+ A + L VP++V N W Sbjct: 848 ELIFEAPIDEIQELTELVTNVMDSAVV----LDVPMRVESHYGNTW 889 Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 97/292 (33%), Positives = 163/292 (55%), Gaps = 15/292 (5%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L R H GL NA+ F N L +++ + + AV Sbjct: 5 LLLIDGNSLAFRAFYAMYNQLDRMISHKGLHTNALVAFNNFLDQIV-----DPMQPDLAV 59 Query: 64 I-FDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 + +D + TFR E++P+YK R K P Q P +R G+ E G EADDI Sbjct: 60 VAWDAASGKETFRGELFPEYKDGRSKAPSEFKEQFPYLREMVALHGLRNYEQPGLEADDI 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I TY+ + E+ G+ V I++ D+DL QL + + T K E+ +++++K+ + P Sbjct: 120 IGTYSRLGEQAGYTVIIVTGDQDLTQLATDNITVNVTKKGVTEIERYTPDYIMEKFNLKP 179 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ +ALTGD+ DN PG+ +G KTA LL EY +++N+ + +KQ K ++N++ Sbjct: 180 LQIIEKKALTGDTSDNYPGVTKVGEKTALKLLAEYHDIDNLYAHVDDMKQSKLKDNLIND 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 ++A +RKL + TD + +PLE + + L++F + L+F K + ++ Sbjct: 240 RQSAFCARKLATILTDAHLALPLEEIEYRGIDYDNLVTFYENLDFKKQLAKI 291 >gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12] gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum] gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12] Length = 856 Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust. Identities = 222/528 (42%), Positives = 323/528 (61%), Gaps = 32/528 (6%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIA 506 EI ++ +E+ KIG I+ D LH ++G D+ L SY+L+ R +H + Sbjct: 358 EIRKKIENIISSENVKKIGSYIQRD---LHFLNCKIKGDVFDVSLASYLLNPERQNHSLD 414 Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + ++L+ T S IP Q++A + L +L ++ E L Sbjct: 415 ILIGEYLNKT---------SFIP---------QKYA----GYLFPLKSILEERIKNEGLE 452 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 V ++ P+I V+ ME GI++D++ LKQ+S E + + LEE IY+L+G +FNL+SP Sbjct: 453 FVLYNIEIPLIPVLYSMEKWGIKVDKEYLKQLSDEFCERIKKLEEEIYELAGTRFNLNSP 512 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQL ++LF +LK PSG K KTG + T++ L+ + +PI++ IL++R+L K+KSTY D Sbjct: 513 KQLSEVLFERLKLPSGKKGKTG-YSTSSSVLQNL-INAHPIVRKILQYRELYKLKSTYVD 570 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 ++PN +N +T RVHT ++ T TGR++S EPNLQNIPIK++ G+KIRRAF+S L+ Sbjct: 571 AIPNLVNPQTGRVHTKFNPTGTATGRISSSEPNLQNIPIKSEEGRKIRRAFVSEDGYFLV 630 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 S DYSQIELRI+AH+++ L F+ DIHR A+EIFGV E+V +R AK +NF Sbjct: 631 SLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTASEIFGVPEEEVDDLLRSRAKAVNF 690 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 IIYGIS F L+ + I EA +I YF +P + +I+KT + R+ YV+T+FGR+ Sbjct: 691 GIIYGISSFGLSETVSITPEEAEKFIDSYFKHYPRVKLFIDKTIHEAREKLYVKTLFGRK 750 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + EI S +RN ER AINAPIQG+AADI + AMI ++K +E+ L +++LLQIHD Sbjct: 751 RYIPEIKSINKQVRNAYERIAINAPIQGTAADIIKLAMIEIYKEIENKNLKSRILLQIHD 810 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EL+ EVPEEE+ + MEK + L VPL V I V N E Sbjct: 811 ELILEVPEEEMEFTPLMAKEKMEKV----VELSVPLVVEISVGKNLAE 854 Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 124/218 (56%), Gaps = 11/218 (5%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + + + ++DGSS IYR +YA P L K+ L NA+ GF +L K +++ + + Sbjct: 17 ESKRKILIIDGSSLIYRVYYALPPLKTKNGEL-TNALYGFIRILLKAVEDFNPDLVG--- 72 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD P TFR+ IY +YKA RP + + L Q+P +R + IP +E G+EADDII Sbjct: 73 -VAFDRPEPTFRHVIYKEYKAKRPPMKDDLKAQIPWIREFLRLNDIPLLEEPGYEADDII 131 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKI-DIEHVIKKWGIPPE 177 A T + + + I+S D DL+QLVS T L + E I D + V ++G+ P Sbjct: 132 A--TIVNKYKDDLKYILSGDLDLLQLVSDKTFLIHPQKGITEFTIYDPKAVKDRFGVEPY 189 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215 K+ + L GD DNIPG+ GIG K A+ +L++ +++ Sbjct: 190 KIPLYKVLVGDESDNIPGVNGIGPKKASKILEKISSVD 227 >gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246] gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica] gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246] Length = 875 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 214/492 (43%), Positives = 299/492 (60%), Gaps = 33/492 (6%) Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 ED+ LM Y L +G S ++ KE+LK ++ ++ I ++ Sbjct: 411 EDLELMQYALSAGLSQKNLF-----------KEVLK------------ETWIENIIIASA 447 Query: 547 NVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 +++ L + +L K +Y +D P+ ++ +ME GI +D + LKQ+SAE Sbjct: 448 KIVINFIALYKQTIWELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYLKQLSAEFG 507 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINC 662 +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A K + T A+ LE+++ Sbjct: 508 TEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSE 567 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 I +L WRQL+K+K+TY DSLP I+ T RVHT + ST TGRL+S EPNLQN Sbjct: 568 HGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQN 627 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +PI++ G +IR+AFI+ KLISADYSQIELRIL+HIA I L Q F N DIH A Sbjct: 628 VPIRSSEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +IF + +++ + RR AK INF IIYGIS F LA QL + EA++YIK+YF + G+ Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGV 747 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 EY+E+TK F NGYV FGR+ I+ K ++ ERAAINAPIQG+ ADI + Sbjct: 748 QEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNADIIKI 805 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI++ + +E KL T+++LQIHDEL+FE P +E+ + II ME + N+ VP+ Sbjct: 806 AMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NMAVPI 861 Query: 963 KVNIKVSNNWQE 974 I+ NNW E Sbjct: 862 ITEIRAGNNWME 873 Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 123/294 (41%), Positives = 175/294 (59%), Gaps = 7/294 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M ++N L L+DG F++RA+YA PL S K G PV A+ GF +ML KLL + + + Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLSDFKPK---- 54 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD FR++IYPDYKANRP PE L+ QLPLVR P +E G+EADD Sbjct: 55 HVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADD 114 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IIAT+ G V IIS+DKDL+QL++ +YD +K + I + V+KK+G +K+ Sbjct: 115 IIATFATKTAALGAHVVIISSDKDLLQLMTENIKIYDPLKGKYITEDDVVKKFGTTSDKL 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GD DNIPG+P IG KTA+ L+ ++G++ENI + ++ K+RE + E Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREA 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 A +S +L+ L ++V + L +L N +L FL+ F L RV D Sbjct: 235 ALISWQLIGLNSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288 >gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali] Length = 875 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 217/493 (44%), Positives = 302/493 (61%), Gaps = 35/493 (7%) Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 ED+ LM Y L +G S ++ KE+LK ++ ++ IE++ Sbjct: 411 EDLELMQYALSAGLSQKNLF-----------KEVLK------------ETLIENIIIESA 447 Query: 547 NVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 +++ ++ L + I+E K +Y +D P+ ++ +ME GI +D + LKQ+SAE Sbjct: 448 KIVIN-FISLYKQTILELKDNKTFRLYSDIDLPICFILDKMEKVGITVDANYLKQLSAEF 506 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQIN 661 +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A K + T A+ LE+++ Sbjct: 507 GTEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLS 566 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 I +L WRQL+K+K+TY DSLP I+ T RVHT + ST TGRL+S EPNLQ Sbjct: 567 EHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQ 626 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIPI++ G +IR+AFI+ KLISADYSQIELRIL+HIA I L Q F N DIH Sbjct: 627 NIPIRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQT 686 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A +IF + +++ + RR AK INF IIYGIS F LA QL EA++YIK+YF + G Sbjct: 687 ACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNATNGEASEYIKKYFAEYKG 746 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + EY+E+TK F NGYV FGR+ I+ K ++ ERAAINAPIQG+ ADI + Sbjct: 747 VQEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNADIIK 804 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI++ + +E KL T+++LQIHDEL+FE P +E+ + II ME + N+ VP Sbjct: 805 IAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NMDVP 860 Query: 962 LKVNIKVSNNWQE 974 + I+ NNW E Sbjct: 861 IITEIRAGNNWME 873 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 121/294 (41%), Positives = 173/294 (58%), Gaps = 7/294 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M ++N L L+DG F++RA+Y PL S K G PV A+ GF +ML KLL + + + Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYTQQPLNSPK--GEPVGALYGFTSMLLKLLSDFKPQ---- 54 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD FR++IY DYKANRP PE L+ QLPLVR P +E G+EADD Sbjct: 55 HVAVVFDSGGKNFRHQIYSDYKANRPPPPEDLIVQLPLVRDVAGNLNFPILEKNGYEADD 114 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IIAT+ G V IIS+DKDL+QL++ +YD +K + I + V+KK+G +K+ Sbjct: 115 IIATFATKTAALGEHVVIISSDKDLLQLMTEHIKIYDPLKGKYITEDDVVKKFGTTSDKL 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GD DNIPG+P IG KTA+ L+ ++G++ENI + ++ K+RE + E Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSIKQRETLQNSREA 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 A +S +L+ L ++V + L +L N +L FL+ F L RV D Sbjct: 235 ALISWQLIGLDSNVDLDFQLNNLKWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288 >gi|313608606|gb|EFR84470.1| DNA polymerase I [Listeria monocytogenes FSL F2-208] Length = 531 Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust. Identities = 220/527 (41%), Positives = 319/527 (60%), Gaps = 19/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 +++ E+E K+ ++ K + ++R G+++ G DIML SY+L+ S D S+A + Sbjct: 13 FREWVESEQ-TKVVYDAKKTMVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVAVR 71 Query: 512 WLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 YT E K K S P + I S + A+ I L L L + L Sbjct: 72 H-DYTEVETDEAVYGKGAKRSTPEESIVASHLARKAV----AIADLEKRLVADLEENEQL 126 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 + E L+ P+ V+++ME+ G+ +D + L+ + E++ L +LEE+I+ L+GE+FN++SP Sbjct: 127 ALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEFNINSP 186 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KL P+ KTKTG + T A LE + G + II IL +RQL KI+STY + Sbjct: 187 KQLGVILFEKLGLPAVKKTKTG-YSTAADVLESL-SGKHAIIDEILLYRQLGKIQSTYIE 244 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745 L +K T +VHT ++ T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P K+ Sbjct: 245 GLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGWKM 304 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 SADYSQ+ELR+LAHI++ L F++ DIH A ++F V ++V MRR AK +N Sbjct: 305 FSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVN 364 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R EA D+I RYF +P + EY++ F ++ GYVETI R Sbjct: 365 FGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHR 424 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + EI S ++R ER A+N PIQGSAADI ++AMI + + L KL K+LLQ+H Sbjct: 425 RRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVH 484 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+FE PE EI +I+ ME A + L VPLKV+ + W Sbjct: 485 DELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 527 >gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] Length = 898 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 226/621 (36%), Positives = 355/621 (57%), Gaps = 32/621 (5%) Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 LS N Y I N + + ++ + + + T ++D F K + I+I+ + K Sbjct: 295 LSAELTNKVEYKVIENERALSDLLETIMKSKKIALDLETTSLDPFEGKIVGISIAVDEGK 354 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 +I ++ H KN + + +L+ F + + GHNIK+D + Sbjct: 355 --------AFYIPIA-HVG----AKNIPIESVKKFLRDLFNSGKTVG-GHNIKFDLKFIS 400 Query: 478 RYGIS--MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPI----- 530 R GI + F D M+ +Y+L+ ++ ++ K L + K +IP+ Sbjct: 401 RLGIEPQIPSF-DSMIEAYLLNPNEKKFNLDELSLKLLGHKMISYEDLVKDTIPLFAGDF 459 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 I +++ E++++ L++ LL P + ++ +YE+++ PMI V++ +E+ G+ Sbjct: 460 SYIPVDTAVKYSCEDADMSLRIHNLLHPLIYSNEMNELYEKIELPMILVLANLELNGVYF 519 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D L +S E+ K LL+L I++++GE FNL+SPKQLG ILF KLK PS T TG + Sbjct: 520 DIQYLNNLSQEMDKKLLALSNRIFEITGEAFNLNSPKQLGYILFEKLKLPSVKSTSTGAY 579 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + LE + + I K ILE+R++ K+KSTY D++PN +NK T+RVH ++ T T Sbjct: 580 STDVEVLEYL-ANEYEIAKLILEYRKIQKLKSTYVDAIPNMVNKNTKRVHASFNQTGTAT 638 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPL 767 GRL+S +PNLQN+P ++D G++IR A P K ++ ADYSQIELR+LAHI + L Sbjct: 639 GRLSSSDPNLQNLPGRSDEGKEIRMAV--KPQKDGWYILGADYSQIELRVLAHITEDPNL 696 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F+ + DIH A ++FGV+ E ++ MRR K +NF+I+YG+SP+ LA + + + Sbjct: 697 INAFKENKDIHLETAKKLFGVSEEFITENMRRIGKMVNFAIVYGVSPYGLAKRTGLDVKD 756 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 I+ Y + + EY+ K F ++NGYV T+FGR+ +INS +IR ER A Sbjct: 757 TKKMIEAYLDYYKNVQEYMANIKEFAKKNGYVRTMFGRKRDIPQINSKDQNIRAEGERIA 816 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 IN PIQGSAADI + AMI +++ L+D KL + M+LQ+HDELVFEVPE E+ +++ Sbjct: 817 INTPIQGSAADIMKIAMIRIYERLKDEKLQSMMILQVHDELVFEVPENEVEYVKKLVKEE 876 Query: 948 MEKACLPKINLRVPLKVNIKV 968 ME A + LRVPL V+I V Sbjct: 877 MENA----VKLRVPLLVDIYV 893 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 116/302 (38%), Positives = 169/302 (55%), Gaps = 30/302 (9%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 +FL DG+ +YRA++A G+P NA+ G ML K L+ H + Sbjct: 3 RVFLFDGTGLLYRAYFAIDQSLTTTSGVPTNALYGLSRMLVKFLK--------EHVIINE 54 Query: 66 DYPAV--------TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 DY A T+R E+Y DYKA+RP+ PE LL Q+ L + FGI I++ G+EA Sbjct: 55 DYCAFMLDVKGGSTYRKELYADYKAHRPETPEPLLKQISLADELIEGFGIKLIKVPGYEA 114 Query: 118 DDIIATYTYIAEKEG-----FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 DD+IAT EKE + II++DKD++QLV+ ++ K +K + Sbjct: 115 DDVIATLAKKFEKEKQKYNISEINIITSDKDMLQLVNENIFVWRVEKGVTDLKKYTNNEI 174 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 I+K+GI E++ AL GD DNIPG+ GIG KTAA +L E+G++EN L N S++ +K Sbjct: 175 IEKYGITSEQIKDYLALVGDVSDNIPGVSGIGEKTAAKILNEFGSVENALKNISKLPEKI 234 Query: 229 RR--ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 R EN +E E LSRKLV L T+V I I +E L+ + + +L++ LK EF+ +I Sbjct: 235 RNAIENNIEDFE---LSRKLVELNTNVEIKIDIEELLYKGYDQKKLLNVLKKFEFSSVIK 291 Query: 287 RV 288 + Sbjct: 292 EL 293 >gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.] Length = 912 Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust. Identities = 228/616 (37%), Positives = 349/616 (56%), Gaps = 18/616 (2%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 ++ +Y+ I N K + + +++LE+ + T + + +K + I++S Sbjct: 309 LSGKNYSIIDNIKSLSELLRRLESANHFALDTETTSENPLKAKLVGISVSLKAN------ 362 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 E +I L+ + K E L+ LK FEN KIG NIKYD +VL R+GI Sbjct: 363 --EAFYIPLA--HKYEGVPKQLDMNETLNMLKGVFENPDIKKIGQNIKYDWIVLKRHGID 418 Query: 483 MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQV 538 + G + D M+ SY+++ + +H++ IA +L + T +E + +K + + Sbjct: 419 IAGVYSDTMIASYLINPSKRAHNLDQIALDFLGHKKITFEETVGKKKPESGFSNVPLEKA 478 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +A E++++ L +L PKL+ L ++E ++ P+I V+ +MEI GI +D++ L ++ Sbjct: 479 VSYACEDADITLMAHDVLFPKLLEIGLKDLFENIEMPLIPVLMKMEIKGICVDRNRLSEL 538 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S + + LEENIY ++G FN+ SP+QLG++LF KL P KTK +T D+ Sbjct: 539 SKHFEQQIEDLEENIYSVAGMTFNIKSPQQLGEVLFEKLMLPVKKKTKKKTGYSTDVDVL 598 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ + +L R LSK+KSTY D+L + T+R+HT ++ T TGRL+S P Sbjct: 599 TELAQNHELPALVLRHRTLSKLKSTYTDALLEIADPETERIHTSFNQTVTATGRLSSSNP 658 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIP+KTD G++IR AF+ KL+SADYSQIELR+LAH A+ L F DIH Sbjct: 659 NLQNIPVKTDEGREIRSAFVPKKGWKLLSADYSQIELRLLAHCAEDEILINAFLEDEDIH 718 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 A EIF + E ++P++R AKTINFSI+YGIS F L+ L I + A YI YF R Sbjct: 719 TRTAIEIFQIFPEFITPELRYQAKTINFSIMYGISAFSLSKDLGISQKMAQTYINNYFAR 778 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 + + +I+KT + N T+ GR +I+S + ER A+N PIQG+AAD Sbjct: 779 YKEVKRFIDKTISDAHVNKKTSTLLGRIRLLPDIDSSNKIVIAAAERIAVNTPIQGTAAD 838 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 + + AMI++ K+ + KL MLL +HDELVFEVP +E+ S ++ + ME L Sbjct: 839 LIKIAMINIDKAFTEKKLKAAMLLSVHDELVFEVPPDELDMVSDLVKNMMENVW----TL 894 Query: 959 RVPLKVNIKVSNNWQE 974 +VPLKVNI NW + Sbjct: 895 KVPLKVNISSGENWSQ 910 Score = 237 bits (605), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 116/292 (39%), Positives = 186/292 (63%), Gaps = 5/292 (1%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LFL+DGS++IYRA++A LS G P NAI GF +L KL+++ + + ++FD Sbjct: 27 LFLIDGSAYIYRAYHAIRNLSNSK-GFPTNAIFGFTRILIKLIEDWAPK----YVVMVFD 81 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++I+ DYKA RP +PE L Q+P ++ T+AF +P IEIQG+EADDII T Sbjct: 82 AKGPTFRHDIFKDYKATRPPMPEDLQVQIPFIKEITKAFNLPVIEIQGYEADDIIGTLAR 141 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ GF+V +++ DKD +QLV+ + ++D +K++ D++ K +G+ PE+M+ + L+ Sbjct: 142 KAEESGFSVVMVTGDKDFLQLVTDKSIIWDPMKDKITDLDAFRKDFGLIPEQMIDVMGLS 201 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DN+PG+PGIG KTA L++ +G+++N+ N I +KK+ EN++++ E A LSRKL Sbjct: 202 GDTSDNVPGVPGIGPKTALDLIKTFGSMKNLYDNIDSITKKKQYENLVQFKEQADLSRKL 261 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 V + + PI ++ ++ + PRL + EF +L + D N Sbjct: 262 VEIDKNAPINFEIDSFCFKNPDNPRLSELFQEFEFRQLQQSFSGHSDLSGKN 313 >gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] Length = 871 Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust. Identities = 210/525 (40%), Positives = 328/525 (62%), Gaps = 27/525 (5%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI 508 L L+ F ENE K+ HN K+ ++VL RYG+ G D +L+SYVLD G S ++ Sbjct: 361 LEKLRAFLENEEIGKLVHNGKFIEVVLKRYGLKFDGVRGDTLLLSYVLDPGFSGETLSEH 420 Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 +L +D+ D + ++ +L +L KL + L+++ Sbjct: 421 LFHYLGEV-------------VDEKMDPGLAVRGLK------KLHQVLEEKLGSQDLVNL 461 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 Y+ ++ P+ V++ ME TGI++D +L ++S E++ + + IY ++G++FN++S +Q Sbjct: 462 YKVVELPLSPVLADMEFTGIKVDPRILAEISQELALRIAEDQARIYQVAGQEFNINSTRQ 521 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LG +LF L P KTKTG + T+A+ LE++ G + II++I+E+R L+K+KSTY D+ Sbjct: 522 LGKVLFEDLGLPPVKKTKTG-YSTSAEVLEEL-YGSHEIIEHIVEYRTLAKLKSTYVDTF 579 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LIS 747 P +I+ T RVHT + A T TGRL+S+EPNLQNIPI+ + G++IR+AF+ L+S Sbjct: 580 PGYIHPETGRVHTVFKQAVTATGRLSSVEPNLQNIPIRMEEGRRIRKAFVPGDENHILLS 639 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 DYSQI+LR LAH++ L + F +DIH A+EIF V +++V+P +RR AK +NF Sbjct: 640 CDYSQIDLRSLAHMSGDENLIETFRQGIDIHHRTASEIFKVPLDQVTPDLRRKAKAVNFG 699 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 I+YGIS F LA + R EA YI+RY +PG+ Y+++ R+ GYV T+ GRR Sbjct: 700 IVYGISDFGLARGTGVTREEAKAYIERYLDSYPGVRRYMQEVVAMGREKGYVSTVLGRRR 759 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + ++ S ++R++ ER A+NAPIQG++ADI + AM+SV++ L+ L ++MLLQ+HD+ Sbjct: 760 YLPDLLSSNRTVRSMAERMALNAPIQGTSADIIKLAMLSVYRELKRRNLRSRMLLQVHDD 819 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LVFEVP EE+ + ++ ME A L+VPL+V +KV NW Sbjct: 820 LVFEVPLEELEEVALLVRDCMENA----FELKVPLEVEVKVGANW 860 Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 112/286 (39%), Positives = 162/286 (56%), Gaps = 9/286 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + + ++DG+S +YRAFYA PLL R G NA+ GF NML K+L E SH V Sbjct: 3 QERVMIIDGNSLLYRAFYALPLL-RNRRGTFTNAVYGFLNMLSKVLS----EYQPSHIIV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD T R+E Y +YK +RP P L Q ++R +A + IE+ G+EADDII T Sbjct: 58 AFDKDRKTLRSEEYGEYKIHRPPAPPELREQFGILREVLEALNVSYIEMSGYEADDIIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 + A ++G I++ D+D +QLVSP + T K E+ D++ V KW + P ++ Sbjct: 118 LSVRAGEQGLPCIIVTGDQDELQLVSPGIEVLVTKKGISEMERYDLQAVHGKWEVSPYQL 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 ++ L GD+ DNIPG+PGIG KTA L+++YG+LE I N + I + RE + + + Sbjct: 178 PDVKGLMGDASDNIPGVPGIGRKTAIKLVKQYGSLEGIYANLNEITPVRLRELLTAHKDQ 237 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 A LSRKL + DVP+ + E L RL+ + LEF L+ Sbjct: 238 AFLSRKLATIVKDVPLEVEFEKLRRRPPQRERLVRVYQELEFNSLL 283 >gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5] gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5] Length = 875 Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust. Identities = 217/493 (44%), Positives = 304/493 (61%), Gaps = 35/493 (7%) Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 ED+ LM Y L +G ++QK L KE+LK ++ ++ IE++ Sbjct: 411 EDLELMQYALSAG--------LSQKILF---KEVLK------------ETLIENIIIESA 447 Query: 547 NVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 +++ ++ L + I+E K +Y +D P+ ++ +ME GI ++ + LKQ+SAE Sbjct: 448 KIVIN-FISLYKQTILELKDNKTFRLYSDIDLPICFILDKMEKVGITVNANYLKQLSAEF 506 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQIN 661 +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A K + T A+ LE+++ Sbjct: 507 GTEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLS 566 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 I +L WRQL+K+K+TY DSLP I+ T RVHT + ST TGRL+S EPNLQ Sbjct: 567 EHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQ 626 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP ++ G +IR+AFI+ KLISADYSQIELRIL+HIA I L Q F N DIH Sbjct: 627 NIPTRSSEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQT 686 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A +IF + +++ + RR AK INF IIYGIS F LA QL + EA++YIK+YF + G Sbjct: 687 ACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKG 746 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + EY+E+TK F NGYV FGR+ I+ K ++ ERAAINAPIQG+ ADI + Sbjct: 747 VQEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNADIIK 804 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI++ + +E KL T+++LQIHDEL+FE P +E+ + II ME + N+ VP Sbjct: 805 IAMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NMDVP 860 Query: 962 LKVNIKVSNNWQE 974 + I+ NNW E Sbjct: 861 IITEIRAGNNWME 873 Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 122/294 (41%), Positives = 175/294 (59%), Gaps = 7/294 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M ++N L L+DG F++RA+Y PL S K G PV A+ GF +ML KLL + + + Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYTQQPLTSPK--GEPVGALYGFTSMLLKLLNDFKPQ---- 54 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD FR++IYPDYKANRP PE L+ QLPLVR P +E +G+EADD Sbjct: 55 HVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKKGYEADD 114 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IIAT+ G V IIS+DKDL+QL++ +YD +K + I + V+KK+G +K+ Sbjct: 115 IIATFATKTAALGEHVVIISSDKDLLQLMTEHIKIYDPLKGKYITEDDVVKKFGTTSDKL 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GD DNIPG+P IG KTA+ L+ ++G++ENI + ++ K+RE + E Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREA 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 A +S +L+ L ++V + L +L N +L FL+ F L RV D Sbjct: 235 ALISWQLIGLDSNVDLDFQLNNLKWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288 >gi|229543560|ref|ZP_04432620.1| DNA polymerase I [Bacillus coagulans 36D1] gi|229327980|gb|EEN93655.1| DNA polymerase I [Bacillus coagulans 36D1] Length = 875 Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust. Identities = 216/527 (40%), Positives = 321/527 (60%), Gaps = 19/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 KK+ E+E +K ++ K + L RYGI +RG + D++L+SY+L+ + D AS+A K Sbjct: 357 FKKWVEDESKIKHVYDAKRSIVALRRYGIDLRGTDFDLLLVSYLLNPSDTVEDFASVA-K 415 Query: 512 WLSYTRKEI-----LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 Y E K K +P +K + EH + I L L L Sbjct: 416 THDYGNVETDEAVYGKGAKRKLPEEK----RYAEHISRKAEAIDALCEPCTKALKNNGQL 471 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 ++E+L+ P+ +++ ME TG+++D D LK++ E L +E+ IY ++G +FN++SP Sbjct: 472 ELFEQLELPLSLILADMEYTGVKVDTDRLKEMGEEFKLRLHEIEQRIYSMAGTEFNINSP 531 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF K+ P KTKTG + T+A LE++ + I++ IL +RQL K++STY + Sbjct: 532 KQLGVILFEKMGLPVIKKTKTG-YSTSADVLEKLEPA-HEIVREILHYRQLGKLQSTYIE 589 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 L +++ +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AF+ LI Sbjct: 590 GLLKVVHQ-DGKVHTRFNQALTQTGRLSSTDPNLQNIPIRMEEGRKIRQAFVPSEEGWLI 648 Query: 747 -SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 S+DYSQ+ELR+LAHI+ L + F +DIH A E+F V E+V+ +MRR AKT+N Sbjct: 649 FSSDYSQVELRVLAHISGDEKLIEAFREGMDIHTKTAMEVFHVKAEEVTSEMRRQAKTVN 708 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R EA ++IKRYF +P + EY+++ +Q GYV T+ R Sbjct: 709 FGIVYGISDYGLSQNLGISRKEAGEFIKRYFASYPRVKEYMDEIVREAKQKGYVSTLLKR 768 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + EI S ++R+ ER A+N PIQGSAADI ++AMI + K L+ KL ++LLQ+H Sbjct: 769 RRYLPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMAKRLKKEKLRARLLLQVH 828 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+FE PEEEI +I+ ME A ++L PLKV+ W Sbjct: 829 DELIFEAPEEEIEVLKEIVPEVMEHA----VDLAAPLKVDSAYGPTW 871 Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 111/287 (38%), Positives = 166/287 (57%), Gaps = 9/287 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S YRAF+A PLL+ G+ NA+ GF ML K+L+ + +H V FD Sbjct: 4 LILIDGNSIAYRAFFALPLLNNDK-GIHTNAVYGFTMMLSKILEEEK----PTHILVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E Y +YK R K P L Q PL+R A GI E++ +EADDII T + Sbjct: 59 AGKTTFRHETYSEYKGTRQKTPPELSEQFPLIRELLDAHGIERYELENYEADDIIGTLSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AE+EGF V +IS DKD+ QLVSP T + T K E HV +K+G+ P +++ + Sbjct: 119 KAEEEGFIVKVISGDKDMTQLVSPKTTVMITRKGITDMEAYTPAHVEEKYGLTPHQIIDM 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GDS DNIPG+PGIG KTA LL+++ +E +L + + KK +E + E A + Sbjct: 179 KGLMGDSSDNIPGVPGIGEKTAIKLLKQFPTVEELLDHIGEVSGKKLQEKLEANKEQALM 238 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 S++L + D+P++I +E + + +L + L F ++ ++ Sbjct: 239 SKELATIHRDIPLSISIEQAAYKHADPEKLRHLYQELGFKSMLEKMG 285 >gi|294501500|ref|YP_003565200.1| DNA polymerase I [Bacillus megaterium QM B1551] gi|294351437|gb|ADE71766.1| DNA polymerase I [Bacillus megaterium QM B1551] Length = 875 Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust. Identities = 213/530 (40%), Positives = 321/530 (60%), Gaps = 16/530 (3%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 S K + E+ K N K + L G ++G E D+M+ SY+L+ ++ D+A+IA Sbjct: 354 SKFKAWLEDGRVKKTVFNGKRTIVSLKWAGHEIKGIEHDVMIASYILNPAEANDDLATIA 413 Query: 510 Q--KWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 + + E + K K SI +Q+ EH I + + L +L +L+ + Sbjct: 414 KLKGYHQVQSDEAVYGKGAKRSIA----EAAQLAEHVIRKAAAVAYLKEVLEKELVENEQ 469 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 ++E+L+ P+ V++ ME G++ID+ L ++ ++ + L +E IY+ +G++FN++S Sbjct: 470 FELFEKLEMPLAIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYAGQEFNINS 529 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQLG +LF K++ P KTKTG + T+A LEQ+ + II IL++RQL K++STY Sbjct: 530 PKQLGVVLFEKMQLPVIKKTKTG-YSTSADVLEQL-ASTHDIIPEILQYRQLGKLQSTYI 587 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 + L I++ +VHT ++ T TGRL+S++PNLQNIPI+ + G+KIR AF+ S P Sbjct: 588 EGLKKVIHESDGKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGKKIRGAFVPSQPDWL 647 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIA L F++ LDIH A ++F V E+V+ MRR AK + Sbjct: 648 IFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVEREEVTSNMRRQAKAV 707 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R AA +I+RY FPG+ EY++ ++ GYV T+ Sbjct: 708 NFGIVYGISDYGLSQSLGITRKAAATFIERYLKSFPGVQEYMDTIVRDAKEKGYVTTLLH 767 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQG+AADI ++AMI + K L+D L K+LLQ+ Sbjct: 768 RRRYLPEITSRNFNLRSFAERTAMNTPIQGTAADIIKKAMIEMDKRLKDENLQAKLLLQV 827 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL+FE PEEEI +I+ ME A + L VPLKV+ W E Sbjct: 828 HDELIFEAPEEEIKILEKIVPEVMENA----LELEVPLKVDYSYGKTWYE 873 Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 110/305 (36%), Positives = 176/305 (57%), Gaps = 12/305 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V FD Sbjct: 5 LVLIDGNSIAYRAFFALPLLNNDK-GIHTNAIYGFTTMLTRILEEEK----PTHLLVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ + +YK R K P L Q P +R A+GI E+ +EADDII T + Sbjct: 60 AGKTTFRHKTFTEYKGGRQKTPPELSEQFPFIRELLDAYGIKRYELPDYEADDIIGTLSK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181 AEK+G AV +IS DKDL+QLVS + D ++ D++ + +K+GI +++ Sbjct: 120 QAEKKGMAVKVISGDKDLLQLVSEHVTV-DITRKGITDVDSYTPAAIDEKYGITAAQIID 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GDS DNIPG+PG+G KTA LL+E+ +EN+L + ++ KK +E + + E+A Sbjct: 179 MKGLMGDSSDNIPGVPGVGEKTALKLLKEFETVENVLKSIDQVSGKKLKEKLEDNRESAI 238 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 +S+KL + + P+ + +E + ++IS K L F L+ + + + + A+ E Sbjct: 239 MSKKLATIYCEAPLEVSVEDAKYDGFESSKVISLFKELGFNSLLAKFGESAE-EEADFEE 297 Query: 302 VVLDI 306 + +I Sbjct: 298 LTFEI 302 >gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319] gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319] Length = 875 Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust. Identities = 213/530 (40%), Positives = 320/530 (60%), Gaps = 16/530 (3%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 S K + E+ K N K + L G ++G E D+M+ SY+L+ ++ D+A+IA Sbjct: 354 SKFKAWLEDGRVKKTVFNGKRTIVSLKWAGHEIKGIEHDVMIASYILNPAEANDDLATIA 413 Query: 510 Q--KWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 + + E + K K SI Q+ EH I + + L +L +L+ + Sbjct: 414 KLKGYHQVQSDEAVYGKGAKRSIA----EADQLAEHVIRKAAAVAYLKEVLEKELVENEQ 469 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 ++E+L+ P+ V++ ME G++ID+ L ++ ++ + L +E IY+ +G++FN++S Sbjct: 470 FELFEKLEMPLAIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYAGQEFNINS 529 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQLG +LF K++ P KTKTG + T+A LEQ+ + II IL++RQL K++STY Sbjct: 530 PKQLGVVLFEKMQLPVIKKTKTG-YSTSADVLEQL-ASTHDIIPEILQYRQLGKLQSTYI 587 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 + L I++ +VHT ++ T TGRL+S++PNLQNIPI+ + G+KIR AF+ S P Sbjct: 588 EGLKKVIHESDGKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGKKIRGAFVPSQPGWL 647 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIA L F++ LDIH A ++F V E+V+ MRR AK + Sbjct: 648 IFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVEREEVTANMRRQAKAV 707 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R AA +I+RY FPG+ EY++ ++ GYV T+ Sbjct: 708 NFGIVYGISDYGLSQSLGITRKAAATFIERYLKSFPGVQEYMDTIVRDAKEKGYVTTLLH 767 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQG+AADI ++AMI + K L+D L K+LLQ+ Sbjct: 768 RRRYLPEITSRNFNLRSFAERTAMNTPIQGTAADIIKKAMIEMDKRLKDENLQAKLLLQV 827 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL+FE PEEEI +I+ ME A + L VPLKV+ W E Sbjct: 828 HDELIFEAPEEEIKILEKIVPEVMENA----LELEVPLKVDYSYGKTWYE 873 Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 109/305 (35%), Positives = 176/305 (57%), Gaps = 12/305 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V FD Sbjct: 5 LVLIDGNSIAYRAFFALPLLNNDK-GIHTNAIYGFTTMLTRILEEEK----PTHLLVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ + +YK R K P L Q P +R A+GI E+ +EADDII T + Sbjct: 60 AGKTTFRHKTFTEYKGGRQKTPPELSEQFPFIRELLDAYGIKRYELPDYEADDIIGTLSK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181 AE++G AV +IS DKDL+QLVS + D ++ D++ + +K+GI +++ Sbjct: 120 QAEQKGMAVKVISGDKDLLQLVSEHVTV-DITRKGITDVDSYTPAAIDEKYGITAAQIID 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GDS DNIPG+PG+G KTA LL+E+ +EN+L + ++ KK +E + + E+A Sbjct: 179 MKGLMGDSSDNIPGVPGVGEKTALKLLKEFETVENVLKSIDQVSGKKLKEKLEDNRESAI 238 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 +S+KL + + P+ + +E + ++IS K L F L+ + + + + A+ E Sbjct: 239 MSKKLATIYCEAPLEVSVEDAKYDGFESSKVISLFKELGFNSLLAKFGESAE-EEADFEE 297 Query: 302 VVLDI 306 + +I Sbjct: 298 ITFEI 302 >gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5] gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5] Length = 875 Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust. Identities = 213/492 (43%), Positives = 299/492 (60%), Gaps = 33/492 (6%) Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 ED+ LM Y L +G S ++ KE+LK + ++ IE++ Sbjct: 411 EDLELMQYALSAGLSQKNLF-----------KEVLK------------EPWIENIIIESA 447 Query: 547 NVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 +++ L + +L K +Y +D P+ ++ +ME GI +D + LKQ+SAE Sbjct: 448 KIVINFIALYKQTIWELKDNKTFRLYSNIDLPICFILDKMEKVGITVDANYLKQLSAEFG 507 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINC 662 +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G A K + T A+ LE+++ Sbjct: 508 TEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSE 567 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 I +L WRQL+K+K+TY DSLP I+ T +VHT + ST TGRL+S EPNLQN Sbjct: 568 HGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITHKVHTTFLQTSTTTGRLSSQEPNLQN 627 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +PI++ G +IR+AFI+ KLISADYSQIELRIL+HIA I L Q F N DIH A Sbjct: 628 VPIRSSEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +IF + +++ + RR AK INF IIYGIS F LA QL + EA++YIK+YF + G+ Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGV 747 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y+E+TK F NGYV FGR+ I+ K ++ ERAAINAPIQG+ ADI + Sbjct: 748 QKYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNADIIKI 805 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI++ + +E KL T+++LQIHDEL+FE P +E+ + II ME + N+ VP+ Sbjct: 806 AMINLDQEIEKRKLKTRLVLQIHDELLFEAPIDEVEIITPIIKKIMENST----NMAVPI 861 Query: 963 KVNIKVSNNWQE 974 I+ NNW E Sbjct: 862 ITEIRAGNNWME 873 Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 123/294 (41%), Positives = 175/294 (59%), Gaps = 7/294 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M ++N L L+DG F++RA+YA PL S K G PV A+ GF +ML KLL + + + Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLSDFKPK---- 54 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD FR++IYPDYKANRP PE L+ QLPLVR P +E G+EADD Sbjct: 55 HVAVVFDSGGKNFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADD 114 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IIAT+ G V IIS+DKDL+QL++ +YD +K + I + V+KK+G +K+ Sbjct: 115 IIATFATKTAALGAHVVIISSDKDLLQLMTENIKIYDPLKGKYITEDDVVKKFGTTSDKL 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GD DNIPG+P IG KTA+ L+ ++G++ENI + ++ K+RE + E Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREA 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 A +S +L+ L ++V + L +L N +L FL+ F L RV D Sbjct: 235 ALISWQLIGLNSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRVENLLD 288 >gi|170017479|ref|YP_001728398.1| DNA polymerase I [Leuconostoc citreum KM20] gi|169804336|gb|ACA82954.1| DNA polymerase I - 3'-5' exonuclease or polymerase domains [Leuconostoc citreum KM20] Length = 893 Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust. Identities = 211/526 (40%), Positives = 326/526 (61%), Gaps = 15/526 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L+ EN K N+K ++ R G++++G + D +L++Y+LD+ + ++++++AQ+ Sbjct: 373 LRAVIENGDIKKNVFNVKAQLILFKRLGLTLKGAQFDFLLVAYLLDTTDNDNEMSTLAQR 432 Query: 512 WLSY-TRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 + Y T E + K K ++P D + V H ++ ++QL + L + H+ Sbjct: 433 FDVYLTEDEEIYGKGAKYAVPDD---EELVLMHLAHKADALIQLEMPALSALQSHQQTHL 489 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 Y ++ P+ V+++ME G +ID+ L+ + ++ + ++EE IY +GEKFNL+SPKQ Sbjct: 490 YTEIELPLAHVLAEMEYQGFKIDRKRLQVIGEDLEARIHTIEEAIYLEAGEKFNLNSPKQ 549 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LG +LF K+ P KTKTG +TA D+ + PI+++IL++RQL+KIKSTY + L Sbjct: 550 LGILLFEKMGLPIIKKTKTGY--STAVDVLEKLASQAPIVEHILQYRQLAKIKSTYVEGL 607 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747 ++ ++HT + T TGRL+S++PNLQNIP++T+ G++IRRAF+ S P ++ Sbjct: 608 LAVVHTEDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRTEEGRQIRRAFVPSQPNWQIFG 667 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINF 806 ADYSQIELR+LAHI + + F N DIH A +FG+ N V P MRR AK +NF Sbjct: 668 ADYSQIELRVLAHITGDQNMQRAFLNGEDIHAETARAVFGLDNNAPVDPLMRRTAKAVNF 727 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YGIS + L+ L I R+EA +I+ YF FP IHE++ K K + GYVETI RR Sbjct: 728 GIVYGISDYGLSNNLGISRAEAKRFIETYFKEFPQIHEWMTKIKAQAHEQGYVETIAKRR 787 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + EI S ++R+ ER A+N+PIQGSAADI + AMI V +L+D++L +LLQ+HD Sbjct: 788 RYLPEIKSKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVADALKDNQLQANILLQVHD 847 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EL+FE PE+EI T I+ M+ A + L VP++V+ N W Sbjct: 848 ELIFEAPEDEIETLRDIVTRVMDSA----VALDVPMQVDSHYGNTW 889 Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 160/295 (54%), Gaps = 15/295 (5%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L R H GL NA+ F N L +++ + + AV Sbjct: 5 LLLIDGNSLAFRAFYAMYNQLDRMISHKGLHTNALVAFNNFLDQIV-----DPMQPDLAV 59 Query: 64 I-FDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 + +D + TFR E++ +YK R K P Q P +R G+ E G EADDI Sbjct: 60 VAWDAGSGKTTFRGELFSEYKDGRSKAPSEFTEQFPYLREMVALHGLRNYEQPGLEADDI 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T++ + E+ G+ V I++ D+DL QL + + T K E +++++K+ + P Sbjct: 120 IGTFSRMGEQAGYNVIIVTGDQDLTQLATDNITVNVTKKGVTEIEAFTPDYIMEKFELTP 179 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ +ALTGD+ DN PG+ IG KTA LL+ Y +++N+ + +K K +EN++ Sbjct: 180 SQIIEKKALTGDTSDNYPGVTKIGEKTALKLLKTYHDIDNLYRHIDDMKPSKMKENLISD 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 +A +R+L + TD + +PLE L + +L+ F + ++F K + ++ + Sbjct: 240 QASAFRARQLATILTDATLDLPLEELEYRGIDYDKLVPFYENIDFKKQLAKIKAS 294 >gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii] Length = 876 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 212/527 (40%), Positives = 326/527 (61%), Gaps = 18/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ- 510 KK+ E+E K + K + L R+GI ++G E D++L SY+++ S D A +A+ Sbjct: 357 FKKWAEDETKKKTVFDAKRTVIALRRHGIELKGIEFDLLLASYLINPSESPSDFADVAKL 416 Query: 511 -KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL-QLWLLLRPKLIVEKLLHV 568 + E + + + + K+ D ++ E I V L +L R L L + Sbjct: 417 HGFNEVQSDEAVYGKGAKL---KLPDREIYEEHIARKAVGLTKLAETCRDVLKENDQLSL 473 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 + L+ P+ +++ ME TG+++D D L ++ E+ L +E+ IY+L+G++FN++SPKQ Sbjct: 474 FYDLEMPLALILADMEWTGVKVDVDRLTEMGDELHNRLQEIEKEIYELAGQEFNINSPKQ 533 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LG ILF K+ P KTKTG + T+A LE++ + I++ ILE+RQL K++STY D L Sbjct: 534 LGHILFEKMGLPVIKKTKTG-YSTSADVLEKLESS-HEIVRYILEYRQLGKLQSTYIDGL 591 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---L 745 +++ T +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P++K + Sbjct: 592 LKVVHQNTHKVHTRFNQALTQTGRLSSADPNLQNIPIRLEEGRKIRQAFV--PSEKDWVI 649 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 SADYSQIELR+LAHI+ L + F +DIH A ++F V E+V+ MRR AK +N Sbjct: 650 FSADYSQIELRVLAHISGDQKLIEAFREDMDIHTKTAMDVFHVQKEEVTSNMRRQAKAVN 709 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R EA +I+RYF +P + EY+++ ++ GYV T+ R Sbjct: 710 FGIVYGISDYGLSQNLGITRKEAGQFIERYFASYPDVKEYMDEIVREAKRKGYVTTLLHR 769 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + EI S ++R+ ER A+N PIQGSAADI ++AMI + + L+ +L ++MLLQ+H Sbjct: 770 RRYLPEITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDMAERLKKEQLKSRMLLQVH 829 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+FEVP +EI T +I+ ME A + L+VPLKV+ W Sbjct: 830 DELIFEVPPDEIETMKKIVPDVMEHA----VELKVPLKVDYAYGPTW 872 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 111/298 (37%), Positives = 173/298 (58%), Gaps = 9/298 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG++ YRAF+A PLL+ + G+ NAI GF ML K+L+ + +H V FD Sbjct: 5 LILIDGNNIAYRAFFALPLLNNEK-GIHTNAIYGFTMMLNKILEEEK----PTHMLVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E + +YK R K P L Q P +R ++F IP E++ +EADDII T + Sbjct: 60 AGKTTFRHETFKEYKGGRQKTPPELSEQFPFIRDLLKSFHIPQFELENYEADDIIGTLSL 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTT----CLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 AEK+ F + I S DKDL QL S T C E+ EHV +K+G+ P++++ + Sbjct: 120 EAEKKDFEIKIYSGDKDLTQLASEKTTVCLCRKGITDIEEYTPEHVKEKYGLTPQQIIDM 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GDS DNIPG+PGIG KTA LL+E+ +E ++ + I KK +E + E+ + A + Sbjct: 180 KGLMGDSSDNIPGVPGIGEKTAIKLLKEFETVEKVVDSIDEISGKKLKERLQEHKQQALM 239 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 S++L ++ D P+ I ++ L + + ++ S K L F L+ ++ T + + +E Sbjct: 240 SKELATIKRDAPLGITVDELEYQGPDWEKVQSIYKELGFQSLLEKIDQTQETEVQPLE 297 >gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] Length = 1036 Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/532 (37%), Positives = 323/532 (60%), Gaps = 10/532 (1%) Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505 +EIL +K FF + N K+D +LH GI ++ + D ++ S++ + R HD+ Sbjct: 509 EEILKEIKPFFADSSLKFFAQNAKFDLQMLHYAGIEVKNIDFDTLVASFICNPSRQFHDL 568 Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S++ +L+Y + + ++ K I + + +V + E+ ++ L+L L +L Sbjct: 569 DSLSLHYLNYRKISTESLIGKGKKQISMADLPVERVATYCCEDVDITLRLRNELEAELHR 628 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 L ++++ +D P+I V+S+ME GI I+ L+++S++ S L EE I+ L+G +FN Sbjct: 629 RDLRNLFDEMDIPLIPVLSKMENNGISINLGTLEKISSDFSAELKKCEEQIHALAGHEFN 688 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 ++SPKQ+G +LF ++ +G KT TG + T+A+ LE + ++ I++ IL R LSK+ S Sbjct: 689 INSPKQVGVVLFEEMGLKAGKKTATG-YSTSAEVLENL-AAESEIVRAILRHRTLSKLIS 746 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TYAD+LP +++ QR+HT +S + TGRLAS +PNLQNIP +T G+ IR AF +P Sbjct: 747 TYADALPKEVSELDQRIHTRFSQTTAATGRLASTQPNLQNIPTRTAEGKSIRSAFQAPEG 806 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 IS DYSQIELRI+A +++ L + F N D+H A+ +F + +V+ Q R AK Sbjct: 807 HHFISCDYSQIELRIMAELSQDPGLLEAFNNDFDVHTHTASLVFETELSEVTKQQRYAAK 866 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF I++G P+ LA ++ + EA +I YF R+P + +++ K R GY ET Sbjct: 867 AVNFGIMFGQGPYGLAKEIGVSADEAKQFISNYFKRYPDVQKFMAKCVEDARDKGYSETS 926 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 FGRR + E+ S IR+ ER ++N+PIQG+AADI + AMI V LE +L +KMLL Sbjct: 927 FGRRRYLPEMLSSNGRIRSGAERISVNSPIQGTAADIIKIAMIKVADELEKRQLKSKMLL 986 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+FEVP++E+ ++I M +P+I +VPLKV+ + +W + Sbjct: 987 QIHDELLFEVPDDELEIMKELIPQIMTD--IPQI--KVPLKVDCAAAKSWDQ 1034 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/304 (38%), Positives = 169/304 (55%), Gaps = 5/304 (1%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M ++ +F++D ++I+RAFY DGLP NA+ GF N ++++ SH Sbjct: 1 MSDQSSIFVIDSMAYIFRAFYGIRANMHSKDGLPTNALFGFINSFENIIRDFN----PSH 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 +FD + TFRNE+Y +YKANR + PE L PQ LV+ GIP + +GFEADDI Sbjct: 57 VVAVFDAGSETFRNEMYSEYKANRKECPEELKPQFDLVKEYIALRGIPLLIQKGFEADDI 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKM 179 IAT A I S DKDLMQLV+ T + T K ID E V++ G+ P+++ Sbjct: 117 IATVAKQATGSHIKTVICSGDKDLMQLVNDDTLICHTHKNNLMIDAEKVVEIMGVRPDQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 V ++ GDS DNIPG+PGIG K AA LL E+ NLE IL + +IK KK+ E I E A+ Sbjct: 177 VDYLSICGDSADNIPGLPGIGPKGAAKLLAEFDNLETILASHDKIKGKKQSETIREKADL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS+ LV+L+ ++ + E L+ + L F + + F + + + N Sbjct: 237 ATLSKSLVILQDEMTLDKSYEELVPSQPDFDGLADFYERMGFARFLRDLPNIKASYEGNS 296 Query: 300 EPVV 303 +P + Sbjct: 297 KPTL 300 >gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1] gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1] Length = 1027 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 209/537 (38%), Positives = 318/537 (59%), Gaps = 17/537 (3%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507 ++ L+ E+ K+GHN+K+D +VL G+ + G D M+ Y+L+SG +H + Sbjct: 496 VIEILRDVLESSAIEKVGHNLKFDVIVLRSAGVQLGGITMDTMVADYLLNSGGRNHGLDD 555 Query: 508 IAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 +AQ+ L +T K+++ + K I +D++ V +A E+ +V ++L LR +L Sbjct: 556 LAQRRLDHTNLSIKDLIGTGKKQITMDQVPVDDVSPYACEDVDVPIRLAPTLRDELNESG 615 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L +++ ++ P+ +V+++ME GI ++ D L ++S K++ L ++ +G +FNL Sbjct: 616 LDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIADLRALVFSAAGHEFNLD 675 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG +LF +L P KTKTG T A L Q+ ++ I +++L++RQ +K+K+TY Sbjct: 676 SPKQLGVVLFEELGLPVIKKTKTG-VSTDADVLSQLAV-NHEIAEHVLQYRQATKLKNTY 733 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK- 743 D+LP I +T RVHT + TGRL+S EPNLQNIPI+T+ G+ IR AF + Sbjct: 734 IDALPQLICDKTGRVHTSFRQDVAATGRLSSSEPNLQNIPIRTEQGKAIRAAFTAGREGW 793 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 L+ ADYSQIELR+LAH + L + + DIH VAAE+ G+ +V+ +RR AKT Sbjct: 794 SLLGADYSQIELRVLAHYSGDEALIGAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKT 853 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 INF I+YG SPF LA L I EA DYI+ YF R+ G+ ++ T R GYV T+ Sbjct: 854 INFGIVYGQSPFGLAKTLGISNDEARDYIELYFQRYSGVEAFMMDTLARCRNEGYVATML 913 Query: 864 GRRIHYDEINS----PKSSIRNIN--ERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917 GRR + P+S R++ ER AIN PIQG+AAD+ + AM+ VH+ L+ L Sbjct: 914 GRRREIKGVRDLAKLPESKRRSLTEPERIAINMPIQGTAADLIKLAMLRVHEQLKQSDLQ 973 Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++LLQIHDEL+ E P+EE+ S I +M + L VPLKV++ W + Sbjct: 974 ARLLLQIHDELLLESPDEELDALSDTIREAMTSV----MELDVPLKVDVAHGRTWAD 1026 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 121/295 (41%), Positives = 173/295 (58%), Gaps = 5/295 (1%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + +VD S IY+ F+A P ++ GLPV+A+ GF + +LL SRK + FD Sbjct: 130 VVVVDAHSLIYQVFHALPPMTSTG-GLPVSAVYGFVGDMLELL--SRKNP--DYLIAAFD 184 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 VTFRNE+YP+YKANR +P+ L Q+PL+R A A GI IE GFEADD++AT Sbjct: 185 KSEVTFRNELYPEYKANRDSMPDELRQQIPLIRQAIDAMGIGIIEQSGFEADDLLATVAA 244 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 E+ G ++++DKD QL+S T +Y+ K+++ID + WGI P+++V QAL Sbjct: 245 KVEEAGGRCLVVTSDKDCRQLISDQTKIYNIRKDQEIDAAELFGLWGIRPDQVVDYQALV 304 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD +DN+PGI IG K A LL+ + LE IL NA I KKR+EN++ E A +SR+L Sbjct: 305 GDPVDNVPGISLIGPKIAQQLLETHDTLEEILNNAESISGKKRKENLMNGREAAMMSREL 364 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 V L+ DV IP + + R+ + L+ F +L +R A +A EP Sbjct: 365 VELKRDVESPIPWNRCVRSAADLERVDALLQEFGFRRLRSRAAELLGGEAPVEEP 419 >gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] Length = 893 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 210/527 (39%), Positives = 330/527 (62%), Gaps = 10/527 (1%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK E++ LK+G NIKYD VL R+G+S+ G D M+ SYV++ G H++ ++AQ+ Sbjct: 370 LKDVLEDDAVLKVGQNIKYDACVLKRHGVSLSGISFDTMIASYVINPGLRQHNLDALAQR 429 Query: 512 WLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 +L++ + K+++ K++ +++S + E++ E++++ +L +L ++ EK + Sbjct: 430 YLNHKMISYKDVVGKGKNARGFEEVSLEKACEYSCEDADMTFRLRRILAKQIRDEKNEAL 489 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 + L+ ++ V+ ME+TGI+ID L + +SA+ ++ + +E+ I +G +FNL+SP+Q Sbjct: 490 FNELEMKLLPVLLDMEMTGIKIDTALFETMSADFAEEMKQVEKKIQADAGMEFNLNSPQQ 549 Query: 629 LGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 LG +LF LK P G KT KT ++ T + L+++ + I + IL +R L+K+KSTY D+ Sbjct: 550 LGKVLFEVLKLPGGRKTAKTKRYSTDVKVLQKL-AESHRIAREILRFRSLAKLKSTYLDA 608 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747 L +N T+RVHT ++ TGRL+S +PNLQNIPI+ D G+ IR+ F++ K L++ Sbjct: 609 LVRMVNPETKRVHTSFNQTVAATGRLSSSDPNLQNIPIRGDAGKNIRKGFMAGSGKILVA 668 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIELR+ AH ++ F+ + DIH A E+ G +V+P+MRR AK INF Sbjct: 669 ADYSQIELRVFAHYSQDAAFMAAFKENQDIHARTALEVLGKEKGEVTPEMRRIAKAINFG 728 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 IIYG+ P +L+ +L I + A DYI Y+ R+ G+ + EK + GYV T+F RR Sbjct: 729 IIYGMGPQKLSEELSISKEAAQDYINAYYDRYKGVKRFKEKAIETALEKGYVTTLFNRRR 788 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + +I+ + IR+ ER A+N PIQG+AAD+ ++AMI +H L + +KMLLQ+HDE Sbjct: 789 YLPDISHNNNRIRSEAERMAVNTPIQGTAADLIKKAMIEIHNRLTEAAFQSKMLLQVHDE 848 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+ EVPEEE +I ME P LRVPLKV+I NW E Sbjct: 849 LLLEVPEEEADDLINMIREEME-GVYP---LRVPLKVDIGKGLNWDE 891 Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 118/291 (40%), Positives = 179/291 (61%), Gaps = 6/291 (2%) Query: 1 MQKE-NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M+ E N ++L+DGSS+I+RA++A L + G P NAI GF M+ KLL E + Sbjct: 1 MENERNTIYLLDGSSYIHRAYHAIRNL-QNAKGFPTNAIFGFTQMVLKLLS----EKKPA 55 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + AV+FD TFR+++Y +YKANRP +P + QLP +R + GI +E G+EADD Sbjct: 56 YLAVVFDAKGPTFRHDLYEEYKANRPPMPHDMAAQLPFIRKVVKNLGIAMLEKSGYEADD 115 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 II T E+EGF V ++S DKD QL+ P ++DT+K++ D + + +G PEK Sbjct: 116 IIGTLARAGEEEGFNVVVVSGDKDFRQLIRPRVSMWDTMKDKITDYDSLKSAYGFEPEKF 175 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + + L+GD+ DNIPG+ G+G KTA L++E+G+L+ + N IK+KK +EN+ + + Sbjct: 176 IDVMGLSGDTSDNIPGVRGVGEKTAVSLVREFGSLDGVFENLDEIKKKKLKENLNDCRKL 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 ARLSRKLV + VPI+ L ++ + + + L + LEF L +R A Sbjct: 236 ARLSRKLVTIECFVPISTDLNNIKVNEPSRDELADIFRELEFRDLWDRFAA 286 >gi|238853764|ref|ZP_04644130.1| DNA polymerase I [Lactobacillus gasseri 202-4] gi|282851273|ref|ZP_06260638.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1] gi|311110324|ref|ZP_07711721.1| DNA polymerase I [Lactobacillus gasseri MV-22] gi|238833573|gb|EEQ25844.1| DNA polymerase I [Lactobacillus gasseri 202-4] gi|282557241|gb|EFB62838.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1] gi|311065478|gb|EFQ45818.1| DNA polymerase I [Lactobacillus gasseri MV-22] Length = 886 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 214/528 (40%), Positives = 330/528 (62%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L++ E++ K +IK + LHR I G + D++L SY++++ +S+D+ +A Sbjct: 367 LRQMLEDKKIKKNVFDIKRTYVGLHRLDIDAEGLDYDMLLASYLVNNENNSNDLGEVAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K +K ++P D + EH VI +L L KL + Sbjct: 427 YDDYSVKTDLEVYGKGKKQAVP----EDDEFFEHLAAKVAVIEKLKQPLLEKLKDHEQDD 482 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +YE ++ P+ V+++MEITGI+++ +L Q+ + + L LE IY +GE+FNL+SPK Sbjct: 483 LYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPK 542 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + LEQ+ +PI+ IL++RQ++KI++TY Sbjct: 543 QLGHILFEKLNLPPIKKTKTG-YSTSVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKG 600 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745 L I + R+HT Y T TGRL+S++PNLQNIP +TD G++IR+AF+ P TK + Sbjct: 601 LLECIQPDS-RIHTRYLQTLTATGRLSSVDPNLQNIPTRTDEGKQIRKAFV-PSTKDGYI 658 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804 S DYSQ+ELR+LAH++ + + F++ DIH A +IF ++ ++V+P MRRHAK + Sbjct: 659 FSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R +A +I YF ++P I +Y++K R+NGY ETI Sbjct: 719 NFGIVYGISDYGLSKNLGISRKQAKTFIDNYFEQYPQIKDYMDKAIKKARENGYAETIMH 778 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I+S ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TKM+LQ+ Sbjct: 779 RRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQV 838 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 839 HDELIFDVPKDELDTIKKIVPEVMQSA----VKLDVPLIADSNWGHNW 882 Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 105/292 (35%), Positives = 164/292 (56%), Gaps = 11/292 (3%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L R DGL NAI F NML ++ K++ S+ V Sbjct: 6 LLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTDPSNVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y DYK R K P L QLP++R + GI + E++ +EADDII T Sbjct: 62 AFDAGKVTFRTKMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179 + + E+ G+ V I++ D+DL QL S T + T E EH+ + G+ P + Sbjct: 122 LSKMGEEAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPEHMKEVNGVTPTEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DN PG+ +G KTA+ L+Q+YG++E + + +K+ K +EN++ + Sbjct: 182 IDMKALMGDNSDNYPGVTKVGPKTASRLIQKYGSVEKLYEHVDEMKKSKLKENLINDKDK 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 A L++KL + D P+ + L LE+ N L + + L F K + + + Sbjct: 242 AILAKKLATIDRDSPVEVTLADTKLEEPNIEDLRNLYERLGFKKFLAELGAS 293 >gi|116630048|ref|YP_815220.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] gi|116095630|gb|ABJ60782.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] Length = 896 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 214/528 (40%), Positives = 330/528 (62%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L++ E++ K +IK + LHR I G + D++L SY++++ +S+D+ +A Sbjct: 377 LRQMLEDKKIKKNVFDIKRTYVGLHRLDIDAEGLDYDMLLASYLVNNENNSNDLGEVAHL 436 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K +K ++P D + EH VI +L L KL + Sbjct: 437 YDDYSVKTDLEVYGKGKKQAVP----EDDEFFEHLAAKVAVIEKLKQPLLEKLKDHEQDD 492 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +YE ++ P+ V+++MEITGI+++ +L Q+ + + L LE IY +GE+FNL+SPK Sbjct: 493 LYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPK 552 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + LEQ+ +PI+ IL++RQ++KI++TY Sbjct: 553 QLGHILFEKLNLPPIKKTKTG-YSTSVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKG 610 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745 L I + R+HT Y T TGRL+S++PNLQNIP +TD G++IR+AF+ P TK + Sbjct: 611 LLECIQPDS-RIHTRYLQTLTATGRLSSVDPNLQNIPTRTDEGKQIRKAFV-PSTKDGYI 668 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804 S DYSQ+ELR+LAH++ + + F++ DIH A +IF ++ ++V+P MRRHAK + Sbjct: 669 FSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 728 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R +A +I YF ++P I +Y++K R+NGY ETI Sbjct: 729 NFGIVYGISDYGLSKNLGISRKQAKTFIDNYFEQYPQIKDYMDKAIKKARENGYAETIMH 788 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I+S ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TKM+LQ+ Sbjct: 789 RRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQV 848 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 849 HDELIFDVPKDELDTIKKIVPEVMQSA----VKLDVPLIADSNWGHNW 892 Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 105/292 (35%), Positives = 164/292 (56%), Gaps = 11/292 (3%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L R DGL NAI F NML ++ K++ S+ V Sbjct: 16 LLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTDPSNVLV 71 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y DYK R K P L QLP++R + GI + E++ +EADDII T Sbjct: 72 AFDAGKVTFRTKMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDIIGT 131 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179 + + E+ G+ V I++ D+DL QL S T + T E EH+ + G+ P + Sbjct: 132 LSKMGEEAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPEHMKEVNGVTPTEF 191 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DN PG+ +G KTA+ L+Q+YG++E + + +K+ K +EN++ + Sbjct: 192 IDMKALMGDNSDNYPGVTKVGPKTASRLIQKYGSVEKLYEHVDEMKKSKLKENLINDKDK 251 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 A L++KL + D P+ + L LE+ N L + + L F K + + + Sbjct: 252 AILAKKLATIDRDSPVEVTLADTKLEEPNIEDLRNLYERLGFKKFLAELGAS 303 >gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255] Length = 882 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 209/530 (39%), Positives = 330/530 (62%), Gaps = 11/530 (2%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS-SHDIAS 507 +S L F N K G+N+K D + L Y I++ + DI + Y++DS S S+D ++ Sbjct: 357 VSKLDSIFSNNEIKKYGYNLKDDYISLKPYNINLENMYFDITIAEYLIDSTSSTSYDCSA 416 Query: 508 IAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 IA K+LS +++E+L S + + + E+ + + + ++ L+ Sbjct: 417 IAMKYLSKKVKSKEELLGKGVKSKNYEDLEFEDLAEYMGQIICTVKETVPMMERSLMDMS 476 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 + ++ ++ P+++V+ ME GI++D+ +L ++S E + + +LE+ IY+LSGE FN++ Sbjct: 477 MDGLFYHVEMPLVEVLGHMEYEGIKVDKSILDELSVEFKEIIATLEKEIYELSGEPFNIN 536 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG ILF KL+ P KTKTG + T A LE++ +PII I E+RQ+ K+ STY Sbjct: 537 SPKQLGVILFEKLELPIIKKTKTG-YSTNADVLEKLR-DKHPIIDKITEYRQIVKLNSTY 594 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 + L N IN + R+H+ ++ T TGR++S EPNLQNIPIK ++G+KIR+ FI+ K Sbjct: 595 VEGLLNIINPESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCK 654 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L+ ADYSQ+ELR+LAH+++ + + F++ DIH A+++F V +E V+ ++R AK + Sbjct: 655 LVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAV 714 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF IIYG S F LA L IP +A +YI+ YF ++ I E+++ T ++GY TI Sbjct: 715 NFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN 774 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S RN +R A+NAPIQGSAADI + AMI+VHK LE++ L +K++LQ+ Sbjct: 775 RRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQV 834 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL+ E ++EI +I+ ME A +N+ V L V++ V ++W E Sbjct: 835 HDELIVEAIDDEIDIVKKIVKEEMENA----VNMDVHLDVDLNVGSSWYE 880 Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 111/293 (37%), Positives = 170/293 (58%), Gaps = 10/293 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DG+S I RAFYA P ++ K +GL NAI GF ML+K++ + +H +V FD Sbjct: 5 LIIIDGNSIINRAFYALPEMNNK-EGLKTNAIYGFTTMLFKMIDIYK----PTHISVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ Y +YKA R +P+ L QL ++ F I +EI G+EADDII T + Sbjct: 60 RKAPTFRHLEYKEYKAGRKGMPDELAEQLQPLKDLLDKFRINRLEIDGYEADDIIGTVSK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AE+ G+ V I++ DKD +QL S T T K E+ + VI+K+ + P + + L Sbjct: 120 KAEENGYKVYIVTGDKDAIQLASDNTTTLITKKGVGEVEEYNFNSVIEKYEMTPTQFIDL 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+PGIG KT L++E+ ++EN++ N ++K +++ I E E A Sbjct: 180 KGLMGDKSDNIPGVPGIGEKTGIKLIKEFSSIENLMENTDKLKGSVKKK-IEENKEIAIQ 238 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 S++L + DVPI + L+ +I D + L+ + FT L++R+ D D Sbjct: 239 SKRLATIIRDVPIEVDLDSMIFGDYDKDELLDKFRYFGFTSLLSRLVDLVDSD 291 >gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519] gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii] Length = 888 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 203/536 (37%), Positives = 329/536 (61%), Gaps = 11/536 (2%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS 501 N K++L LK FEN K G+N+K D L+L Y I++ G + DI + Y++DS S Sbjct: 358 NIEEKDVLK-LKDVFENPEIKKYGYNLKNDCLILKPYEINLTGLYFDIAIAEYLIDSTSS 416 Query: 502 SHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558 +++I IA K+ + +E+L KS +SD+Q+ +A +++ + L Sbjct: 417 NYEIKDIALKYNLGDVLSLEELLGKGKSKKDFKDLSDAQISGYACSVLDIVDKGKEALIT 476 Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 + + +++ ++ P++++++ ME GI D+++L ++ + + +LE +IY+ +G Sbjct: 477 TIENYNMHNLFYEVEMPLVEILADMEYIGISADKEVLNELKQKFDIEIKTLEASIYEYAG 536 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 E FN++SPKQLG ILF KL P+ KTKTG + T A+ LE + +PII I +RQ + Sbjct: 537 ENFNINSPKQLGHILFDKLGLPAIKKTKTG-YSTNAEVLEAL-SDKHPIIDKITLYRQYT 594 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 K++STY D L N IN +T R+H+ ++ T TGR++S EPN+QNIP++ ++G+++R+ F+ Sbjct: 595 KLQSTYVDGLLNIINPKTGRIHSSFNQTITTTGRISSTEPNMQNIPVRLEIGRELRKVFV 654 Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 +P L+ ADYSQIELRILAHIA L F DIH + A+E+F V +++V+ ++R Sbjct: 655 APEDMYLVDADYSQIELRILAHIANDEGLIDAFSKGDDIHTITASEVFNVPLDEVTKELR 714 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 AK +NF I+YGIS F L+ L I + A +YI YF R+P + +Y+E + +GY Sbjct: 715 SAAKAVNFGIVYGISDFGLSNNLGISKQVAKEYIDNYFARYPYVKKYMEDIVEKAKNDGY 774 Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 VET GRR + E+ S ++N+ +R A+N PIQGSAAD+ + AM+ V+ L+ L + Sbjct: 775 VETYIGRRRYIPELGSNNFIMKNLGKRLAMNTPIQGSAADVIKIAMVKVYARLKSEGLKS 834 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 K++LQ+HDEL+ E P+ E + + ++ ME A ++L V L V+ K +W E Sbjct: 835 KLILQVHDELIIESPDSEKSYVADLLKEEMESA----VDLNVKLTVDAKWGKSWYE 886 Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 110/288 (38%), Positives = 166/288 (57%), Gaps = 10/288 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S + RA+YA P L K G NAI GF N+L+K++ + SH +V FD Sbjct: 16 LILIDGNSLMNRAYYALPELMNKK-GQHTNAIYGFANILFKIMDTYK----PSHISVAFD 70 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y YK NR K+P+ L Q+ ++ AFGI IE++G+EADD+I T Sbjct: 71 LKAPTFRHKQYDAYKGNRKKMPDELREQVEPLKKMIDAFGINRIELEGYEADDLIGTVAK 130 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 E++GF V II+ DKD +QLVS + T K ++ D + + +K+ + P++ + L Sbjct: 131 NFEQDGFEVYIITGDKDALQLVSDKIKVLFTKKGISELDEYDPDKMTEKYELTPQQFIDL 190 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+ GIG KT LL+EYG++ENI +N I + + + Y + A L Sbjct: 191 KGLMGDQSDNIPGVAGIGEKTGIKLLKEYGSIENIYMNIDEISKSVKAKLEAGY-DMAFL 249 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 S+ L + D+P+ + ++ +D + LIS EF LI +V Sbjct: 250 SKSLATIMVDIPLELKVDEFEKKDIDKNTLISLFSEFEFNSLIGKVGN 297 >gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4] gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4] Length = 875 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 202/490 (41%), Positives = 308/490 (62%), Gaps = 15/490 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543 D+++ SY+LD SSHD++ IA K + K K +P + + EH + Sbjct: 392 DLLMASYLLDPSHSSHDLSDIATRKGAKSIQADEAVYGKGAKRKVPETDV----LAEHLV 447 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 +NVI +L + +L + +++ L+ P+ V+ +ME G+++D D LK + +++ Sbjct: 448 RKANVIYELKERMEEELKKNEQFELFKDLEMPLSVVLGRMETEGVKVDIDQLKAMGEDLA 507 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 L LE++I++ +G FN++SPKQLG++LF KL P KTKTG + T+A LE++ Sbjct: 508 SRLAELEKHIHEHAGVSFNINSPKQLGEVLFEKLGLPVIKKTKTG-YSTSADVLEKL-AE 565 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 D+ II++IL +RQL K+ STY + L +K T ++HT ++ A T TGRL+S +PNLQNI Sbjct: 566 DHEIIRHILHYRQLGKLNSTYIEGLVKVTHKGTSKIHTRFNQALTQTGRLSSTDPNLQNI 625 Query: 724 PIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 PI+ + G+KIR+AFI S K+++ADYSQIELR+LAHIA+ L F+ +D+H A Sbjct: 626 PIRLEEGRKIRKAFIPSEEGWKILAADYSQIELRVLAHIAQDEKLITAFKEDMDVHTKTA 685 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 ++F V+ E V+ MRR AK +NF I+YGIS + L+ L I R EAA +I+RY +P + Sbjct: 686 MDVFHVSEEDVTSMMRRSAKAVNFGIVYGISDYGLSQSLGITRKEAAKFIERYLASYPNV 745 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 EY+E+ R+NGYV T+ RR + E+ S + R+ ER A+N PIQG+AADI ++ Sbjct: 746 AEYMERIIEEARENGYVSTLLNRRRYLPELTSRNFNQRSFAERTAMNTPIQGTAADIIKK 805 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AM+ + LE+ L +++LLQ+HDEL+FEVP EE+ +I+ ME A + L VPL Sbjct: 806 AMVEMALRLEEANLKSRLLLQVHDELIFEVPPEEVDEMMKIVPEVMENA----VELAVPL 861 Query: 963 KVNIKVSNNW 972 KV+I + W Sbjct: 862 KVDISAGDTW 871 Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 116/304 (38%), Positives = 175/304 (57%), Gaps = 9/304 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S YRAF+A PLL+ G+ NA+ GF ML K++Q + +H V FD Sbjct: 4 LILIDGNSIAYRAFFALPLLNNDK-GVYTNAVYGFTTMLLKIIQEEK----PTHMLVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ Y +YK R K P L Q PL+R AF I E+ +EADDII T + Sbjct: 59 AGKTTFRHKTYEEYKGGRQKTPPELSEQFPLIRELLDAFNIKRFELDNYEADDIIGTLSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AEKE + V ++S DKDL+QLVS + T K E D + +K+GI P +++ + Sbjct: 119 EAEKEKWEVKVVSGDKDLLQLVSDYVTVVLTKKGITNVESYDEALIDEKYGIKPHQIIDM 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GDS DNIPG+PG+G KTA LL+++G +EN+L + + KK +E + E E A + Sbjct: 179 KGLMGDSSDNIPGVPGVGEKTALKLLKQFGTIENVLDSVDDVSGKKLKEKLSENKEQALM 238 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S++L + T+VP + L+ L + + +++S K LEF L+++ T +E + Sbjct: 239 SKELATIFTEVPYNLTLDELKFGEYDEEKVVSLFKELEFKSLVDQFDTGVSAAEKELEEL 298 Query: 303 VLDI 306 D+ Sbjct: 299 SFDV 302 >gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797] gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797] Length = 900 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 208/533 (39%), Positives = 324/533 (60%), Gaps = 11/533 (2%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507 +L +LK E+ L NIKYD +VL R G+ ++G D M+ SY++ +G H + Sbjct: 367 VLEHLKPILEDPEILITNQNIKYDMVVLMRVGVFLQGVSIDPMVASYLISAGERGHSLDK 426 Query: 508 IAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 +++++L++T E++ S K + ++ +V E+A+E++ + QL +L+ +L Sbjct: 427 LSERYLNHTMIPISELIGSGKQQKKMFEVDVDKVAEYAVEDAEIAWQLSRILQDELKHAG 486 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L +Y L++P+I ++++ME TGI++D LKQ S + K L +L I++++G +FN++ Sbjct: 487 LWELYWELERPLISILAEMEFTGIKVDTAELKQQSQLLEKRLTTLISEIHEIAGHEFNIA 546 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SP QL +LF +L P KTKTG +T Q + + + + I E R LSK+KSTY Sbjct: 547 SPLQLRTVLFEELNLPVFKKTKTG--PSTDQSVLEKLAPLHALPARITEHRHLSKLKSTY 604 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK- 743 D+LP +N T R+H ++ TGRL+S +PNLQNIP++T G++IR+AFI Sbjct: 605 LDALPGLVNPETGRIHASFNQVVAATGRLSSSDPNLQNIPVRTQEGRQIRKAFIPQDENW 664 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 +L+ ADYSQIELRILAH+++ L Q F DIH VA++IF V ++V MRR AK Sbjct: 665 RLLCADYSQIELRILAHLSQDVALSQAFREGADIHTAVASDIFRVPHDQVDSDMRRTAKA 724 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF +IYG SPF L+ + IP+SEAA +I+ YF R+ G+ E++++ + +VETI Sbjct: 725 VNFGVIYGQSPFGLSEAIGIPQSEAAGFIEDYFVRYQGVREFLDQILEDCAKQKFVETIC 784 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 GR+ + N+ ER AIN IQGSAAD+ ++AM++V ++ + +ML+Q Sbjct: 785 GRKREIQGVRGGVQKQLNMPERTAINTVIQGSAADLIKQAMLNVSDRIKQEQHPGRMLMQ 844 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 IHDELVFEVP + T I+ ME A ++L VPL V++ NW E+N Sbjct: 845 IHDELVFEVPLTALDTLGLIVREEMESA----MDLEVPLIVDMSSGLNWLEQN 893 Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/296 (34%), Positives = 167/296 (56%), Gaps = 6/296 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+++D S +++ F+A P ++ G P NAI G + +++ + + FA+ Sbjct: 5 LYIIDTFSLVFQVFHAVPAMTGP-TGQPTNAIFGITRDILNIIKTHSPDYLI--FAMDSS 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P RN++Y +YKANR +PE L+PQ+P + + F +P IE G+EADD+ AT Sbjct: 62 GPGT--RNDLYSEYKANRSAMPEDLVPQIPHIMDVVKGFQVPVIECPGWEADDVFATIAR 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +A ++G TI++ DKD QL++ + LY+ K + +D E V WG+ P++++ Q+L Sbjct: 120 LANEKGIETTIVTNDKDARQLINDSIRLYNIRKNQFMDAEAVQADWGVRPDQVIDFQSLV 179 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS+DNIPG+P +G K A L++++G LE +L NA + K K ++N+ E+A+ AR+SR+L Sbjct: 180 GDSVDNIPGVPLVGPKKAQTLIEQFGTLEGVLANADKAKGPKLQQNLKEFADQARMSREL 239 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 V L + + I E L + RL F + + +A EPV Sbjct: 240 VTLNQSLDLNINWEASRLTHPDRERLHQLFVDFGFRRFAEDMKEVLSTEAPP-EPV 294 >gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228] Length = 880 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/439 (45%), Positives = 291/439 (66%), Gaps = 12/439 (2%) Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 Q+ A++ S + +L L KL LL++Y+ ++ P+I V++QME+ G+++D+D L + Sbjct: 441 QKLAVKTSK-LFELETKLITKLKENNLLNLYQEIELPLIKVLAQMELNGVKVDKDWLANL 499 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 S ++ K L + + + L+GE+FNL+SPKQLG+ILF KL P +TKTG + T A LE Sbjct: 500 SEKLGKRLAIITDKAHKLAGEEFNLNSPKQLGEILFEKLGLPVIKRTKTG-YSTNASVLE 558 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ G + II I E+R+L+K+KSTY DSLP IN T ++HT ++ T TGRL+S EP Sbjct: 559 KLE-GKHEIIPLISEYRELAKLKSTYIDSLPPLINDETAKIHTSFNQMVTATGRLSSTEP 617 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSL 775 NLQNIPI+T+ G++IR+AFI P++ L++ DYSQIELR+ AH++ L + F N Sbjct: 618 NLQNIPIRTEEGREIRKAFI--PSRSDMILLAVDYSQIELRVFAHLSGDQKLKEAFNNEA 675 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH AAE+F V E V+P +RRHAK INF I YG+S + L+ L IP EA YI +Y Sbjct: 676 DIHTETAAEVFEVKAEAVTPDLRRHAKVINFGIAYGMSAYGLSQDLDIPVEEAQTYIDKY 735 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F RF G+ +Y+E+T V++ GY ET+FGRR + EINS R+ ER AIN P+QG+ Sbjct: 736 FERFSGVKKYMEQTIEKVKKLGYAETMFGRRRYIPEINSSNYHRRSFAERTAINTPVQGT 795 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI +++M+ V+ L+ +L +LLQ+HDELVFEV ++ A+++I ME Sbjct: 796 AADIMKKSMLDVYSCLKKSELDLNILLQVHDELVFEVNRNDLDEAAELIKEKMENTT--- 852 Query: 956 INLRVPLKVNIKVSNNWQE 974 L VPL V++++ NW++ Sbjct: 853 -KLDVPLIVDLQIGENWRD 870 Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 123/308 (39%), Positives = 182/308 (59%), Gaps = 9/308 (2%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 +++ LFL+DG S +RAFYA PLL+ G NA+ GF ML+ L E Sbjct: 7 KEQKTLFLLDGHSLTHRAFYALPLLTNDQ-GEYTNAVFGFVRMLFSLTD----EWQPDRM 61 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 + FD TFR++ YP+YK NR K+PE L+PQ+ L++ + IP + G+EADD++ Sbjct: 62 IITFDKKEPTFRHQEYPEYKGNRKKMPEELVPQINLLQETIKKLEIPMVSKVGYEADDLL 121 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPE 177 T + AEK+G+ V I++ D+D +QLVS + T K K D E V++K+ + PE Sbjct: 122 GTLSKQAEKKGYKVYIVTGDRDALQLVSENVNILYTKKGISNLIKFDEEKVMEKYELTPE 181 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 K++ + L GDS DNIPG+PGIG KTA LL+E+G +E IL N ++ KKR+EN+ +Y Sbjct: 182 KLIDRKGLMGDSSDNIPGVPGIGKKTALKLLKEFGTMEEILANIDQVSGKKRKENLYKYT 241 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E ARLS +L ++ DVPI I E L+ + ++ K L FT L++R + Sbjct: 242 EQARLSYRLGKIKRDVPIEIDFEKCRLDLYDDQKVAEQFKNLGFTSLLDRFDFKEELSLE 301 Query: 298 NIEPVVLD 305 N+E +L+ Sbjct: 302 NLEFELLN 309 >gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046] Length = 876 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 216/529 (40%), Positives = 320/529 (60%), Gaps = 21/529 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK + ++E K + K + +LHR GI ++G E D++L SY+L S D+A++A++ Sbjct: 356 LKAWLQDETKKKYIVDSKATQAMLHRLGIELKGVEFDLLLASYILKPSISGDDVATLAKE 415 Query: 512 --WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + E + K K +P V EH + + +L LL KL + Sbjct: 416 FGYQDVQSNEAIYGKGAKWVVP----GADHVAEHVSRKAVAVWKLQPLLDQKLKENEQFE 471 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +Y+ L+ P+ ++ +ME GI ++ D L+Q+ ++ L +E IY+L+GEKFN++SPK Sbjct: 472 LYKELELPLAHILGKMESEGITVNIDTLRQMGDDLKAKLEVMEATIYELAGEKFNINSPK 531 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T A LE++ ++ I+K ILE+R L+K++STY + Sbjct: 532 QLGVILFDKLGLPVIKKTKTG-YSTAADVLEKLQS-EHDIVKYILEYRTLAKLQSTYIEG 589 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L ++K +VHT + A T TGRL+S PNLQNIPI+ + G+KIR+AF+ P+KK Sbjct: 590 LIKEVHKEDSKVHTRFQQALTSTGRLSSTNPNLQNIPIRLEEGRKIRKAFV--PSKKDWI 647 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKT 803 L +ADYSQIELR+LAH+ L + F+ +DIH A ++F + N ++V+ MRR AK Sbjct: 648 LFAADYSQIELRVLAHMCGDEALVEAFQQGMDIHTRTAMDVFNLENPDEVTSLMRRTAKA 707 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R EAA +I+ Y FPG+ Y++ + ++ G+V TI Sbjct: 708 VNFGIVYGISDYGLSQSLDITRKEAAIFIENYLQSFPGVKNYMDTSIEEAKKAGFVTTIL 767 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I S ++R+ ER A+N PIQGSAADI ++AMI ++ LE L TK+LLQ Sbjct: 768 NRRRYLPDITSSNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMNARLEQEGLQTKLLLQ 827 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE P+EEI +I+ ME A I L VPLKV W Sbjct: 828 VHDELIFEAPKEEIEILERIVPEVMENA----IKLSVPLKVEFSYGATW 872 Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 108/285 (37%), Positives = 158/285 (55%), Gaps = 9/285 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S YRAF+A PLL+ G+ NA GF ML K++ E + V FD Sbjct: 6 LLLLDGNSLAYRAFFALPLLTND-SGIHTNATYGFTTMLQKII----GEENPTQMLVAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E + +YK R K P L Q P +R A+ I E++ +EADDII T Sbjct: 61 AGKTTFRHESFGEYKGGRQKTPPELSEQFPYIRKLIDAYNIKRYELEMYEADDIIGTLAK 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 A +G V ++S DKDL QL + +Y T K EK H+ +K+G+ PE+++ + Sbjct: 121 QAAGQGIEVIVVSGDKDLTQLATEDVTVYITRKGITDIEKYTPAHIEEKYGLTPEQIIDM 180 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+PG+G KTA LL+E+G +E + +K K +E +++ E A L Sbjct: 181 KGLMGDQSDNIPGVPGVGEKTAIKLLKEHGTIEKLYEEMDSLKASKMKEKLVDNEEMAHL 240 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 S+KL + TD P+TI L+ L + L++ + L F LI + Sbjct: 241 SKKLATIHTDAPLTISLDDLAYAGPDEEALLNVWQELGFKSLIEK 285 >gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium] Length = 898 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 219/611 (35%), Positives = 354/611 (57%), Gaps = 29/611 (4%) Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428 T I +D+++W+ L + S + D D++ S+ +A+ T D E + Sbjct: 310 THISAAEDLKKWIAYLLNQKNISVLQLIDREDSYSSRLSGLALCTGD---------EVFY 360 Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FE 487 I+ TG I + LK+ ++NE+ KIGHNIK L ++ + + G + Sbjct: 361 IE---------TGTALPENLIATELKELWQNENIHKIGHNIKEFITWLLKHDVELNGLYF 411 Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIE 544 D M+ Y++DS R+ + IAS++ K+L+ + E+L K + +I ++++++ Sbjct: 412 DTMIAEYLIDSIRNGYPIASLSHKYLNRSVPSLDELLGKGKGAKKYSEIPPERLKDYSAY 471 Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 N I +W + + L + ++ ++ P+I V++ ME G ++D L + + Sbjct: 472 NVKAIFDIWPMQKKVLQENRQEELFNDIELPLITVLASMEYHGFKVDAAKLHEYGEVLLS 531 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664 + LE+ IY L+GE+FN++S KQLG ILF KLK P TKTG + T + LE++ Sbjct: 532 RIKDLEKVIYMLAGEEFNINSTKQLGTILFEKLKLPVVKSTKTG-YSTDVEVLEELYY-K 589 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 + II I+E+RQL+K+ +TYA+ L IN T ++H+ ++ T TGR++S EPNLQNIP Sbjct: 590 HDIIPCIIEYRQLTKLYTTYAEGLEKVINPVTGKIHSSFNQTVTATGRISSTEPNLQNIP 649 Query: 725 IKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 ++ ++G++IR+AFI S + ADYSQIELR+LAHI L F DIH A+ Sbjct: 650 VRHEMGREIRKAFIPSSENAVFVDADYSQIELRVLAHITGDEALINAFVKGEDIHTATAS 709 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 +F V E V+P++RR AK +NF I+YGIS + LA L I R EA YI YF ++P + Sbjct: 710 LVFDVAPEDVTPELRRKAKAVNFGIVYGISDYGLARDLGITRKEAKRYIDDYFAKYPKVK 769 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 Y+++ ++ GYVET+F RR + E+ S R+ +R A+N PIQG+AADI + A Sbjct: 770 TYVDEIVRVGQEQGYVETLFHRRRYLPELASKNFHQRSFGKRVAMNTPIQGTAADIIKIA 829 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ V+K+L++ L ++++LQ+HDELV E E+E+ T +++ ME+A + L VPL Sbjct: 830 MVKVYKALKESGLKSRLILQVHDELVIETFEDELETVKELVKKCMEEA----VELSVPLV 885 Query: 964 VNIKVSNNWQE 974 V++ + NW E Sbjct: 886 VDVSIGKNWYE 896 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 135/407 (33%), Positives = 213/407 (52%), Gaps = 40/407 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L+DG+S + R FYA S GL NA+ F N+L K ++ E + AV Sbjct: 5 IILIDGNSILNRGFYALSGRSMLTTSTGLYTNAVFAFVNILNKYIE----EENPDYIAVA 60 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD A TFR+ +Y YKA R +P+ L Q+PL + +A I IE +G+EADDII + Sbjct: 61 FDLRAKTFRHGLYEGYKAQRKGMPDELAMQIPLAKEVLRAMNIAIIEHEGYEADDIIGSL 120 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 + AEKE F V I++ D+D QL+S P+T T + D + +I K+G+ P Sbjct: 121 SLKAEKENFDVIILTGDRDSFQLISDRVKVILPSTKAGKT-ETNVYDKQAIIDKYGVLPH 179 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ ++ L GDS DNIPG+PG+G KTA L+ YG LE + + IKQ K + +++EY Sbjct: 180 QLIDVKGLMGDSSDNIPGVPGVGEKTALSLISAYGTLEGVYEHIDEIKQPKLKASLIEYK 239 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----ATTYD 293 + A LSRKL + ++ + LE L ++ N L++ + LEF +I+++ A + Sbjct: 240 DQAFLSRKLGTIVRNLELCASLEDLKRKEINRKELLNVFRKLEFESIISKMNLASAEVTE 299 Query: 294 CDAANIEPVVLDINTTEN-----------KGIAIETEIDRDTTIKTSQFSSLS----DQT 338 A E + I+ E+ K I++ IDR+ + +S+ S L+ D+ Sbjct: 300 LPPAPEELKITHISAAEDLKKWIAYLLNQKNISVLQLIDREDSY-SSRLSGLALCTGDEV 358 Query: 339 SKINSEQT-PQKLFLERLQKLSQYPINNDSYTKIV-NTKDIQQWVQK 383 I + P+ L L++L Q N++ KI N K+ W+ K Sbjct: 359 FYIETGTALPENLIATELKELWQ----NENIHKIGHNIKEFITWLLK 401 >gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26] gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932] gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55] gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79] gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196] gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291] gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58] gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196] gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291] Length = 882 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 209/530 (39%), Positives = 330/530 (62%), Gaps = 11/530 (2%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS-SHDIAS 507 +S L F N K G+N+K D + L Y I++ + DI + Y++DS S S+D ++ Sbjct: 357 VSKLDSIFSNNEIKKYGYNLKDDYISLKPYNINLENMYFDITIAEYLIDSTSSTSYDCSA 416 Query: 508 IAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 IA K+LS +++E+L S + + + E+ + + + ++ L+ Sbjct: 417 IAMKYLSKKVKSKEELLGKGVKSKNYEDLEFEDLAEYMGQIICTVKETIPMMERSLMDMS 476 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 + ++ ++ P+++V+ ME GI++D+ +L ++S E + + +LE+ IY+LSGE FN++ Sbjct: 477 MDGLFYHVEMPLVEVLGHMEYEGIKVDKSILDELSVEFKEIIATLEKEIYELSGEPFNIN 536 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG ILF KL+ P KTKTG + T A LE++ +PII I E+RQ+ K+ STY Sbjct: 537 SPKQLGVILFEKLELPIIKKTKTG-YSTNADVLEKLR-DKHPIIDKITEYRQIVKLNSTY 594 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 + L N IN + R+H+ ++ T TGR++S EPNLQNIPIK ++G+KIR+ FI+ K Sbjct: 595 VEGLLNIINPESNRIHSSFNQTITTTGRISSTEPNLQNIPIKMEMGRKIRKVFIADDNCK 654 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L+ ADYSQ+ELR+LAH+++ + + F++ DIH A+++F V +E V+ ++R AK + Sbjct: 655 LVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAV 714 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF IIYG S F LA L IP +A +YI+ YF ++ I E+++ T ++GY TI Sbjct: 715 NFGIIYGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN 774 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S RN +R A+NAPIQGSAADI + AMI+VHK LE++ L +K++LQ+ Sbjct: 775 RRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQV 834 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL+ E ++EI +I+ ME A +N+ V L V++ V ++W E Sbjct: 835 HDELIVEAIDDEIDIVKKIVKEEMENA----VNMDVHLDVDLNVGSSWYE 880 Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 111/296 (37%), Positives = 170/296 (57%), Gaps = 10/296 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E L ++DG+S I RAFYA P ++ K +GL NAI GF ML+K++ + +H +V Sbjct: 2 EKKLIIIDGNSIINRAFYALPEMNNK-EGLKTNAIYGFTTMLFKMIDIYK----PTHISV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A TFR+ Y +YKA R +P+ L QL ++ F I +EI G+EADDII T Sbjct: 57 AFDRKAPTFRHLEYKEYKAGRKGMPDELAEQLQPLKDLLDKFKINRLEIDGYEADDIIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 + AE G+ V I++ DKD +QL S T T K E+ + VI+K+ + P + Sbjct: 117 VSKKAENNGYKVYIVTGDKDAIQLASDNTTTLITKKGVGEVEEYNFNSVIEKYEMTPAQF 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+ L GD DNIPG+PGIG KT L++E+ ++EN++ N ++K +++ I E E Sbjct: 177 IDLKGLMGDKSDNIPGVPGIGEKTGIKLIKEFSSIENLIENTDKLKGSVKKK-IEENKEI 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A S++L + DVPI + L+ ++ D + L+ + FT L++R+ D D Sbjct: 236 AIQSKRLATIIRDVPIEVDLDSMVFGDYDKDELLDKFRYFGFTSLLSRLVDLVDSD 291 >gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 896 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 218/571 (38%), Positives = 338/571 (59%), Gaps = 26/571 (4%) Query: 418 DDTSFKVETIFIDLSVHTSQ-------DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 D K E + I +H + GK + +L +K FEN GHN+K Sbjct: 337 DIQPLKAELVGIGFGIHPKKAWYVPLNGKLGK----QRVLEGVKPLFENSAIGFYGHNVK 392 Query: 471 YDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKS 526 YD VL GI ++ D +L SY+L++ H + +A ++ E++ K+ Sbjct: 393 YDWHVLQNEGIQIQNICFDTILASYILNAHSRQHSLEVLALEYFGKVTIPISELIGKGKN 452 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 + + + +V E+ E+ + +L +L +L LL++Y +++ P++ V+++ME Sbjct: 453 VLSMRDVPIERVTEYCCEDVDFTCRLKEVLEKQLKERDLLNLYHQIELPLLVVLAKMERR 512 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 GI +D L+Q+S E+++ L +L+E+IY ++GE+FNL+SPKQ+ ++LF KL P+ KT Sbjct: 513 GIYVDIPYLEQLSKELTQELKTLQESIYTMAGEEFNLNSPKQVSELLFIKLGIPAPKKTA 572 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 TG T+A+ LE + D P+ ILE+R L K++STY D+LP+ + RT R+H+ ++ + Sbjct: 573 TGH-STSAEVLEFLK-NDYPLAGKILEYRLLEKLRSTYVDALPSQVIPRTHRIHSTFNQS 630 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAK 763 TGRL+S +PNLQNIPI+T+ G+KIR AF P K+ +SADYSQIELR+LAH+++ Sbjct: 631 VAATGRLSSQDPNLQNIPIRTEEGRKIRGAF--RPEKEGWSFLSADYSQIELRLLAHLSQ 688 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L F+N+ DIH AA +F + +E+VS + R AK INF IIYG F LA +L I Sbjct: 689 DPVLMAAFQNNEDIHTYTAASMFEIPLEQVSKEQRYQAKAINFGIIYGQQAFGLARELGI 748 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 +A+ +I YF R+P I EY++++K R G T+ GR EI S IR Sbjct: 749 EVKQASKFITMYFQRYPKIKEYLDQSKENARATGKSVTLTGRERIIPEILSKNMQIRAAA 808 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER A+N P+QG+AAD+ + AM+ + + +E L M+LQIHDEL+FE+P+EEI+ SQ+ Sbjct: 809 ERLAVNTPLQGTAADLIKMAMLKMDEEIEKQHLKGFMILQIHDELIFEIPDEEISLFSQL 868 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + M+ L L V L V+I + NW+E Sbjct: 869 VPEVMQSVML----LNVSLVVDINIGKNWKE 895 Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 97/258 (37%), Positives = 153/258 (59%), Gaps = 9/258 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 ++L+++D S F+YR+++A ++ K G NA+ GF + KL ++ E H + Sbjct: 8 HNLYVLDASGFLYRSYFAIRNMTNKQ-GESTNALYGFIRSVLKLFKDFNPE----HLVCV 62 Query: 65 FDYPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD P R E+YP+YKA+R +P L Q+ + GIP + + EADD + T Sbjct: 63 FDGPNNAKKRLELYPNYKAHRSAMPPDLRYQIEWAQDFCSLMGIPYLSVPEVEADDTMGT 122 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCL 182 AE++G + ++DKD+ QLV+P L +T K+ I D + K+WG+PP +MV L Sbjct: 123 VAKWAEQQGAITYLCTSDKDMAQLVNPHVFLLNTHKDNTILDAASIEKEWGVPPSQMVDL 182 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 A+TGD+ DNIPG+ G G KTAA LL+++G+L+ IL + + KK++E + A+ AR+ Sbjct: 183 LAMTGDASDNIPGLTGFGEKTAAALLRQFGSLDYILAHPEEVPGKKKQETLQTEADLARI 242 Query: 243 SRKLVMLRTDVPITIPLE 260 SR LV + D+ + IP E Sbjct: 243 SRDLVTI--DLSVEIPQE 258 >gi|260663490|ref|ZP_05864380.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN] gi|260552031|gb|EEX25084.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN] Length = 886 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 215/527 (40%), Positives = 320/527 (60%), Gaps = 16/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LKK E+ K N K + LHR G+ + G + D++L SY+L++ +++D+ +A Sbjct: 364 LKKLLEDPAVEKDVFNAKAQLVGLHRLGVDLAGVDFDLLLASYLLNTSENANDLGVLAAA 423 Query: 512 WLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + T +E+ K K +IP D D H + + I L L +L + L Sbjct: 424 HDYHQVQTDEEVYGKGAKRAIPAD---DEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLP 480 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +YE +++P+ V++ MEITGI +D LK++ +++ + LE+ IY +GE+FN++SPK Sbjct: 481 LYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVEREAELEQAIYQEAGEEFNINSPK 540 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF K+K P KTKTG +TA D+ + PI+++IL +RQ+SK++STY Sbjct: 541 QLGVILFEKMKLPVIKKTKTGY--STAVDVLEKLADRAPIVQDILAYRQISKLQSTYITG 598 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L I++ Q++HT Y T TGRL+S++PNLQNIP++ + G++IRRAF S P K+ Sbjct: 599 LLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPSAPGWKIF 658 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTIN 805 S+DYSQ+ELR+LAH+ + F DIH A IF + E +V+P MRR AK +N Sbjct: 659 SSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVN 718 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + LA + + R +A ++I+ YF FPG+ +Y+ +Q GYVET+ R Sbjct: 719 FGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR 778 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + EI++ + R+ ER A+N PIQGSAADI + AMI + K+L++ L +MLLQIH Sbjct: 779 RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIRMEKALKERGLRARMLLQIH 838 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DELVFE PEEEI T +++ M+ A + L VPLKV K W Sbjct: 839 DELVFEAPEEEIATLEELVPSIMDSA----VKLDVPLKVESKSGATW 881 Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 109/310 (35%), Positives = 165/310 (53%), Gaps = 14/310 (4%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L L+DG+S ++RAF+A K GL AI GF ML +L+ + ++ Sbjct: 4 QLLLIDGNSIVFRAFFAMHNQMEKFTNQAGLHTAAIYGFKLMLDHILKEVQPDAAL---- 59 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR E Y DYK +R K P L+ QLP VR +A G+ A E+ +EADDII Sbjct: 60 VAFDAGKTTFRTEKYADYKGSRDKTPGELVEQLPYVRKLVEASGLHAYELVNYEADDIIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEK 178 T ++ GF I++ D+DL QL + T + T + E+ ++ +K G+ P + Sbjct: 120 TLAKEGDQAGFETMIVTGDRDLTQLATDHTTVAVTKRGVTQTEEFTPAYMQEKLGVTPRQ 179 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + ++AL GDS DN PG+ IG KTA L+QEYG+L+ + N + +K+ KR+EN++ + Sbjct: 180 YIDVKALMGDSSDNYPGVTKIGEKTAVSLIQEYGSLDGLYENIAAMKKSKRKENLINEEK 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT---TYDCD 295 AR + L +R D P+ I L+ + + + LI + L+F + + D Sbjct: 240 IARECQDLATIRRDAPLAIGLKDIAYQGPDEAALIDLYQELDFKSFLKELGAQEGGAQVD 299 Query: 296 AANIEPVVLD 305 A IE VLD Sbjct: 300 QAPIEYQVLD 309 >gi|168701979|ref|ZP_02734256.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246] Length = 824 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 264/837 (31%), Positives = 418/837 (49%), Gaps = 52/837 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 ++L+D I++ FY +S DG P NA+ G L L A + Sbjct: 8 GSMYLLDAHGLIFQMFYGVGPMSAP-DGRPTNAVFGVTRALMNLYDRG-----ADYLIAT 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D+ TFR EI YKA+R P LL Q P+++ +A +P + G+EADD++AT Sbjct: 62 LDHEKPTFRVEIDAAYKAHRDPPPPDLLLQEPMIQQVMEAMRVPFLIAPGYEADDVMATV 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-EKIDIEHVIKKWGIPPEKMVCLQ 183 + A G V + ++DKD QL++ + + K+ E +D V+ WG+ P+++V Q Sbjct: 122 STQAAARGLDVFLCTSDKDCRQLITDKVKMLNLRKDYEALDAAGVLADWGVRPDQVVDFQ 181 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-KRRENILEYAETARL 242 AL GDS+D + G+ G+G KTAA LQ++G L+ ++ NA + K R+ + + + L Sbjct: 182 ALVGDSVDGVKGVAGVGPKTAAKWLQQFGTLDVLIANADQAAGGPKTRQALKDAVASGAL 241 Query: 243 --SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA--- 297 S++LV L DVP+ E D +G RL+ F RV T A Sbjct: 242 AKSKRLVCLDRDVPVAFDWEGWRRRDWDGQRLLELFHEFGFRGFAERVRKTLTRSGAQKN 301 Query: 298 ---------NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ 348 N P V D T +G+ + SQ + E+ P Sbjct: 302 ADALATAGLNAPPPVAD---TVGRGVPGAKAVPAKKAKGKSQ-KPAGPGLFDLLMEEAPG 357 Query: 349 KLFLE--RLQKLSQYPINND----SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAF 402 + E + + PI++ Y I + +Q+V +L + F + T +D Sbjct: 358 AVPTETGASEPTAPAPISDGWSYSGYESITTPERFEQFVGELAQQPAFVFDLETAGLDPV 417 Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKE-ILSYLKKFFENEH 461 H + + S QK + L V G+ L + +L+ LK FEN Sbjct: 418 HDPIVGYSFSW--QKGTAYY--------LPVRAP---AGEPVLNPDTVLAALKPVFENPA 464 Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517 K HNIK+D +VL G+ + G D M+ Y+LD G +H + + L +T Sbjct: 465 IEKRNHNIKFDLIVLAASGVELAGVAGDSMVAHYLLDPGARAHGLDDLTLDELRHTNISI 524 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 KE++ + K I + ++ ++V+++A E+++ LQL P+L L +Y+ L+ P+I Sbjct: 525 KELIGTGKKQITMAEVPVARVRDYACEDADAALQLAAAFEPRLDAAGLRELYDTLEVPLI 584 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 V+++ME GI++D L Q+ ++ + L E +I+ L+G FN+ S K+L ILF +L Sbjct: 585 RVLAEMEHVGIRVDVPFLVQLGVQMGEELAGYEGDIHALAGRAFNIGSLKELQKILFDEL 644 Query: 638 KFPSGAKTKTGQWKTTAQD-LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 K P +T +T Q+ LE++ + + K +L +R++SK+KSTY D LP +K Sbjct: 645 KLPVQKRTGIKNEPSTDQESLERLAALGHELPKKLLAYRKVSKLKSTYVDVLPALADK-N 703 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 RVHT ++ AS TGRL+S EPNLQN+P +T+ G ++R+AFI L++ADYSQIELR Sbjct: 704 GRVHTSFNQASAETGRLSSSEPNLQNVPTRTEQGAQLRKAFIPRDGWVLVTADYSQIELR 763 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 +L H L F D+H VAA+IF V +V+ R AKT+NF ++YG+S Sbjct: 764 LLTHFCGDDTLRAAFAEDRDVHTAVAAQIFKVPEGEVTKAQRGVAKTVNFGVLYGMS 820 >gi|296111925|ref|YP_003622307.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154] gi|295833457|gb|ADG41338.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154] Length = 895 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 206/528 (39%), Positives = 326/528 (61%), Gaps = 15/528 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L+ EN +K N+K ++ R G+++RG E D +L +Y+LD+ + ++++++AQ+ Sbjct: 375 LRSVIENAAIIKNVFNVKAQFVLFKRLGMTLRGVEFDFLLAAYLLDTTDNDNELSTLAQR 434 Query: 512 WLSYTRKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 + Y + K K ++P + S+V H ++V++QL L + H+ Sbjct: 435 FDFYVTPDEDIYGKGAKYAVPEET---SRVLVHLAHKADVLMQLEQPAFAALQDHEQTHL 491 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 Y ++ P+ V++ ME GI+IDQ L+++ ++ + + +++E I+ +GE FN++SPKQ Sbjct: 492 YTEIELPLAHVLADMEYRGIKIDQTRLREIGTDLEERIDTIKEAIFIEAGEVFNINSPKQ 551 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LG +LF K+ P KTKTG +TA D+ + PI+ +IL++RQL+K+KSTY D L Sbjct: 552 LGILLFEKMGLPVIKKTKTGY--STAVDVLEKLAPQAPIVDHILQYRQLAKLKSTYVDGL 609 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747 + ++++ ++HT + T TGRL+S++PNLQNIP++T+ G+KIR AF+ S P ++ Sbjct: 610 LSVVHEKDSKIHTRFLQTLTQTGRLSSIDPNLQNIPMRTEAGRKIRTAFVPSQPDWQIFG 669 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINF 806 ADYSQIELR+LAH+ + Q F N DIH A +FG++ V P MRR AK +NF Sbjct: 670 ADYSQIELRVLAHMTGDKNMQQAFLNGEDIHAETARAVFGLDDNVPVDPLMRRTAKAVNF 729 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YGIS F LA L I R+EA +I+ YF FP IHE++ + K + G++ETI RR Sbjct: 730 GIVYGISDFGLANNLGISRAEAKRFIETYFQEFPKIHEWMTQIKAKAHEQGFIETIAKRR 789 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + EI S ++R+ ER A+N+PIQGSAADI + AMI V +L+++ + +MLLQ+HD Sbjct: 790 RYLPEIGSKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVADALQENGMQARMLLQVHD 849 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EL+FE P +EI S+++ M+ A + L VP+ V N W E Sbjct: 850 ELIFEAPSDEIAELSELVTRVMDSAVV----LDVPMLVESHSGNTWYE 893 Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 100/292 (34%), Positives = 165/292 (56%), Gaps = 15/292 (5%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L R H GL NA+ F N L +++ + + AV Sbjct: 5 LLLIDGNSLAFRAFYAMYNQLDRMISHKGLHTNALVAFNNFLDQIV-----DPMQPDLAV 59 Query: 64 I-FDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 + +D + TFR E++P+YK R K P Q P +R G+ E G EADDI Sbjct: 60 VAWDAASGKETFRGELFPEYKDGRSKTPSEFQEQFPYLREMVALHGLRNYEQPGLEADDI 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T++ + EK G++VTII+ D+DL QL + + T K E+ +++ K+G+ P Sbjct: 120 IGTFSRMGEKAGYSVTIITGDQDLTQLATEKVTVNVTKKGVTEIEQYTPSYIMDKFGLKP 179 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ +ALTGD+ DN PG+ +G KTA LL EY +++N+ + +KQ K +EN+++ Sbjct: 180 LQIIEKKALTGDTSDNYPGVTKVGEKTALKLLTEYHDIDNLYAHIDDMKQSKLKENLIKD 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A +R+L + TD + +PLE + + +L++F + L+F + + ++ Sbjct: 240 REAAFCARQLATILTDATLELPLEEIEYRHIDYDKLVTFYEDLDFKQQLAKI 291 >gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford] gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford] Length = 872 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 219/489 (44%), Positives = 295/489 (60%), Gaps = 30/489 (6%) Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 ED+ LM Y L +G S ++ A K D+ + E A + Sbjct: 411 EDLELMQYALSAGLSQKNLFEEALK----------------------EDNIINESAKIVA 448 Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 N I L+ L K +Y +D P+ ++ +ME TGI++D + L Q+SAE + Sbjct: 449 NFI-SLYKQTILALKDNKAFRLYSDIDLPICFILDKMEKTGIKVDANYLNQLSAEFGAEI 507 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDN 665 LEE I+ LSG KFN+ SPKQLG ILF K++ P G A K + T A+ LE+++ Sbjct: 508 SILEEEIFALSGTKFNIGSPKQLGKILFEKMQLPFGKAAAKAISYSTAAEILEKLSEHGY 567 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 I +L WRQL+K K+TY DSLP I+ T+RVHT + ST TGRL+S EPNLQNIPI Sbjct: 568 NIADLLLRWRQLTKFKNTYTDSLPKQIDNITRRVHTTFLQTSTTTGRLSSQEPNLQNIPI 627 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 ++ G KIR+AFI+ KLISADYSQIELRIL+HIA I L Q F N DIH A +I Sbjct: 628 RSREGNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDTLKQAFINKDDIHTQTACQI 687 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 F + +++ + RR AK INF IIYGIS F LA QL + SEA++YIK+YF + G+ EY Sbjct: 688 FNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNSEASEYIKKYFAEYKGVQEY 747 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 +E+TK F NGYV FGR+ I+ K ++ ERAAINAPIQG+ ADI + AMI Sbjct: 748 MEQTKAFASSNGYVINFFGRKCFIPLIHDKK--LKQFAERAAINAPIQGTNADIIKIAMI 805 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 ++ + + +KL T+++LQIHDEL+FEVPE+E+ + II ME + N+ VP+ Sbjct: 806 NLDQEIAKNKLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIMENST----NMDVPIITE 861 Query: 966 IKVSNNWQE 974 I+ NNW E Sbjct: 862 IRAGNNWME 870 Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 122/314 (38%), Positives = 181/314 (57%), Gaps = 6/314 (1%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M ++N L L+DG ++RA+YA L+ G PV A+ GF +ML KLL + + + H Sbjct: 1 MTQKNTLLLIDGYGLVFRAYYAQQHLTSPK-GEPVGALYGFTSMLLKLLSDFKPK----H 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+FD FR+ IYP+YKANRP PE L+ QLPLVR +P +E G+EADDI Sbjct: 56 VAVVFDSGGNNFRHHIYPEYKANRPPPPEDLVVQLPLVRDVASNLNLPILEKNGYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IAT+ G V +IS+DKDL+QL+S +YD +K + I + ++KK+G +K+ Sbjct: 116 IATFAAKTAALGEDVVVISSDKDLLQLMSENIKIYDPLKGKYITEDDIVKKFGTTSDKLR 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + ALTGD DNIPG+P IG KTA+ L+ ++G++ENI + ++ K+RE + E A Sbjct: 176 EVMALTGDRSDNIPGVPSIGPKTASSLITQFGSIENIFNSLDQVSSVKQRETLQNSKEDA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +S +L+ L +++ + L +L N +L FL+ F L R +D N Sbjct: 236 LISWQLIGLDSNIDLDFQLNNLEWLPPNSDKLTEFLQKYGFKSLYKRAENLFDI-KINDH 294 Query: 301 PVVLDINTTENKGI 314 ++D TE K I Sbjct: 295 KEIVDNKVTEEKEI 308 >gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 886 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 219/513 (42%), Positives = 319/513 (62%), Gaps = 18/513 (3%) Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEIL- 521 N K + L+R GIS+ G + D++L SY+L++ +S+D+ +A + Y T +E+ Sbjct: 379 NAKAQIVGLNRLGISLDGIDFDLLLASYLLNTNDNSNDLGKLAHEH-GYDDVQTDEEVYG 437 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP D D +H + I QL L +L + L +Y ++ P+ V++ Sbjct: 438 KGAKRTIPDD---DQLFFQHLANKARAIEQLRPQLFEQLEKNEQLPLYTDIELPLTHVLA 494 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEITG+ +D LK + +++++ L +EE IY +GE+FN++S KQLG ILF KLK P Sbjct: 495 KMEITGVHVDAQTLKNMGSKLTERLTEIEEQIYQEAGEEFNINSTKQLGKILFEKLKLPV 554 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG +TA D+ + PI++NIL++RQ+SK++STY L I+ Q++HT Sbjct: 555 IKKTKTGY--STAVDVLEKLAPQAPIVENILQYRQISKLQSTYIKGLLKVIHSSDQKIHT 612 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ G+ IR+AF+ S ++ S+DYSQ+ELR+LAH Sbjct: 613 RYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRQAFVPSHEGWQIFSSDYSQVELRVLAH 672 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLAT 819 I L + F+N DIH A IF + ++ + MRR AK +NF I+YGIS + LA Sbjct: 673 ITGDHNLQEDFKNGEDIHASTARRIFHLKPDQEIDRNMRRRAKAVNFGIVYGISDYGLAQ 732 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 ++ + RS+A ++I+ YF FP + +YI T F RQNGYVETI RR + +INS S Sbjct: 733 RIHVSRSQAHEFIQNYFKEFPKVKDYIHDTIEFARQNGYVETITHRRRYLPDINSKSFSR 792 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER A+N PIQGSAADI + AMI + LE +L KMLLQIHDELVFE P+EEI Sbjct: 793 RSFAERTAMNTPIQGSAADIIKIAMIKMQDELEKRQLKAKMLLQIHDELVFEAPKEEIPV 852 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 S+++ M+ A + L VPLKV+ K + W Sbjct: 853 LSKLVPDVMDSA----VKLSVPLKVDSKYGDTW 881 Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 110/303 (36%), Positives = 165/303 (54%), Gaps = 11/303 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S ++RAF+A K DGL AI GF ML +L+N ++ V Sbjct: 5 LLLIDGNSIVFRAFFAMHNQIDKFTNKDGLHTAAIYGFKLMLDHVLENFHPDAAL----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y DYK R K PE L QLP VR + G+ + E++G+EADDII T Sbjct: 61 AFDAGKVTFRTKMYGDYKGGRSKTPEELTEQLPYVRELVKDSGLHSYELKGYEADDIIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179 + G+ I++ D+DL QL S T + T K E EHV +K GI P ++ Sbjct: 121 LAKEGDAAGYETLIVTGDRDLTQLASEHTTVAVTHKGVTDTEHYTPEHVQEKLGITPAQI 180 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DN PG+ IG KTA L++++G++E I N +K+ K +E+++E E Sbjct: 181 IDMKALMGDTSDNYPGVTKIGEKTAIKLVKQFGSVEGIYENIDELKKSKMKEHLVEEEEI 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 AR + L + D PI + L L +LI F + ++F + ++A + D I Sbjct: 241 ARQCKTLATILRDAPIEVKLADLEYHGPQTEKLIDFYQKMDFQSFLKKMAVSPDDQEPEI 300 Query: 300 EPV 302 P+ Sbjct: 301 API 303 >gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] Length = 923 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 211/537 (39%), Positives = 321/537 (59%), Gaps = 12/537 (2%) Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSS 502 T + I+ K FEN LK+G NIKYD LVL YG+ ++G D M+ YVL Sbjct: 391 TEAQRIVDKFKPVFENPQTLKVGQNIKYDMLVLANYGVEIQGPMFDTMIAHYVLQP-ELH 449 Query: 503 HDIASIAQKWLSYTR---KEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558 H + +A+ +L Y +E++ + K+ + + + + +A E+++V L+L +L Sbjct: 450 HGMDYLAEIYLHYETIKIEELIGPKGKNQKNMRDLDPANIYRYACEDADVTLKLKNVLEK 509 Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 +L ++ ++ P++ V++ ME G++ID + LK+ S + + +EE ++ L+G Sbjct: 510 ELKQNDAEALFCDIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHRLAG 569 Query: 619 EKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677 +FN++SPKQ+G++LF +LK KTKTGQ+ T+ + LE + G + I++ ILE R L Sbjct: 570 VEFNIASPKQVGEVLFDRLKIVDKPKKTKTGQYVTSEEVLESLK-GKHEIVEKILEHRGL 628 Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 K+ TY D+LP IN T +HT ++ T TGRL+S PNLQNIP++ + G++IR+AF Sbjct: 629 KKLLGTYIDALPQLINPETGHIHTSFNQTVTATGRLSSSNPNLQNIPVRNEDGKEIRKAF 688 Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797 I + SADYSQIELRI+AH++ + + F + DIH AA+I+ +E V+ + Sbjct: 689 IPDEGCEFFSADYSQIELRIMAHLSGDPHMIEAFRANQDIHAATAAKIYKEKLEDVTREQ 748 Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857 R AKT NF IIYGIS F LA +L I R EA + I YF +P + EY++ + RQ G Sbjct: 749 RSKAKTANFGIIYGISVFGLAERLGIDRKEAKELIDGYFENYPHVKEYMDSSIQAARQKG 808 Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917 Y+ET+F RR + +INS + +R ER AINAPIQGSAADI + AMI +++ + + Sbjct: 809 YIETVFRRRRYLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMIRIYRRFREEGIR 868 Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +KM+LQ+HDEL F V EE QI++ ME A ++VPL + NW E Sbjct: 869 SKMILQVHDELNFSVVPEEKEKVQQIVIAEMESA----YKMKVPLLADCGWGKNWLE 921 Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 104/299 (34%), Positives = 163/299 (54%), Gaps = 27/299 (9%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYRA+YA P ++ K G +AI GF N L +L K+ +H + Sbjct: 4 LFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAIMGFVNTLEDVL----KKEQPTHIGI 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E Y YKA R + PE++ +P+++ +A+ IP +E+ G+EADD+I T Sbjct: 58 AFDPAGPTFRHEAYQQYKAQREETPEVIRLSVPIIKDIIRAYRIPILEVSGYEADDVIGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGI-PPEK 178 A ++G +++ DKD QLVS +Y +K + +E V K+ I P + Sbjct: 118 LATEAGRQGIRTYMMTPDKDYGQLVSDNVFMYRPKYGDKEFEVMGVEEVKAKFDIQSPAQ 177 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRREN 232 ++ + L GD+ DNIPG PG+G KTA L+ ++G++EN+L + +K + RE Sbjct: 178 VIDMLGLMGDTADNIPGCPGVGEKTAQKLIAQFGSIENLLDHTGELKGAIKTKVETNREQ 237 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 IL S+ L ++TDVPI + ++ L E+ + L + LEF L+ RV T Sbjct: 238 IL-------FSKFLATIKTDVPIALDMDGLKREEPDKDELKRIFEELEFRSLLERVLGT 289 >gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125] gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125] Length = 876 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/492 (40%), Positives = 316/492 (64%), Gaps = 19/492 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQ---KWLSYTRKEIL-KSRKSSIPIDKISDSQVQEHAI 543 D+ + SY+LD S H+++ + + K + + + K K IP +K ++ EH Sbjct: 393 DLQMASYLLDPSTSFHEVSDVTKHHRKGHVHEDEAVYGKGAKRRIPDEK----ELGEHLA 448 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 ++ I QL + KL + L ++ L+ P+ ++ +ME TG+++D + L+Q+ +++ Sbjct: 449 RKADAIFQLKEHVEEKLKENEQLGLFNELEMPLSVILGRMETTGVKVDVEQLEQMGEDLN 508 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 L LE+ I++L+G FN++SPKQLG+ILF KL+ P KTKTG + T+A LE++ G Sbjct: 509 ARLEELEQTIHELAGVSFNINSPKQLGEILFEKLQLPVIKKTKTG-YSTSADVLEKL-AG 566 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 + II +IL +RQL K+ STY D L ++K T +VHT ++ A T TGRL+S +PNLQNI Sbjct: 567 QHEIIDHILHYRQLGKLNSTYIDGLLKVVHKGTGKVHTRFNQALTQTGRLSSTDPNLQNI 626 Query: 724 PIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 PI+ + G+KIR+AF+ P++K +++ADYSQIELR+LAH A+ L + F +D+H Sbjct: 627 PIRLEEGRKIRKAFV--PSEKDWFILAADYSQIELRVLAHFAEDEKLMEAFREDMDVHTK 684 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A ++F V+ E+V+ MRR AK +NF I+YGIS + L+ L I R EAA +I+RYF +P Sbjct: 685 TAMDVFHVSQEEVTSNMRRSAKAVNFGIVYGISDYGLSQNLGITRKEAATFIERYFASYP 744 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 + EY++ + R+ GYV T+ RR + ++ S + R+ ER A+N PIQG+AADI Sbjct: 745 KVKEYLDHVIDEAREKGYVTTLLKRRRYLPDLTSRNFNQRSFAERTAMNTPIQGTAADII 804 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 ++AM+ + +++ L +++LLQ+HDEL+FEVP+EE+ +++ ME+A + LRV Sbjct: 805 KQAMVQMASRMDEEDLQSRLLLQVHDELIFEVPKEEVAQMKELVTSVMEQA----VELRV 860 Query: 961 PLKVNIKVSNNW 972 PLKV++ + W Sbjct: 861 PLKVDVACGDTW 872 Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 114/298 (38%), Positives = 175/298 (58%), Gaps = 13/298 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S YRAF+A PLL+ G+ NA+ GF ML K+L++ + +H V FD Sbjct: 4 LVLIDGNSIAYRAFFALPLLNNDK-GVYTNAVYGFTMMLLKVLEDEK----PTHMVVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ Y YK+ R K P L Q PL+R AF I +E++ FEADD+I T Sbjct: 59 AGKTTFRHDTYDAYKSGRQKTPPELSEQFPLIRELLDAFNIARVEVENFEADDLIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-EKIDI---EHVIKKWGIPPEKMVCL 182 A +E F V I + DKDL+Q+VS + T K +ID+ + + +++GI PE+++ + Sbjct: 119 QASQENFEVKIFTGDKDLLQIVSDHVTVALTRKGITQIDVYDEKGIEERYGITPEQIIDM 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GDS DNIPG+PGIG KTA LL+EYG++E +L + I KK +E + E+ + A + Sbjct: 179 KGLMGDSSDNIPGVPGIGEKTALKLLKEYGSVEKVLESIDEISGKKMKERLEEHRDQALM 238 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 S+KL + + P+T+ + + + ++ K L+F L+++V D D IE Sbjct: 239 SKKLATIYLEAPVTLDADSFTFGEYDKKEVVKLFKELDFNSLLDKV----DADGEGIE 292 >gi|227515613|ref|ZP_03945662.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|227086043|gb|EEI21355.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 916 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 215/527 (40%), Positives = 319/527 (60%), Gaps = 16/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LKK E+ K N K + LHR G+ + G D++L SY+L++ +++D+ +A Sbjct: 394 LKKLLEDPAVEKDVFNAKAQLVGLHRLGVDLAGVNFDLLLASYLLNTSENANDLGVLAAA 453 Query: 512 WLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + T +E+ K K +IP D D H + + I L L +L + L Sbjct: 454 HDYHQVQTDEEVYGKGAKRAIPAD---DEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLP 510 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +YE +++P+ V++ MEITGI +D LK++ +++ + LE+ IY +GE+FN++SPK Sbjct: 511 LYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVEREAELEQAIYQEAGEEFNINSPK 570 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF K+K P KTKTG +TA D+ + PI+++IL +RQ+SK++STY Sbjct: 571 QLGVILFEKMKLPVIKKTKTGY--STAVDVLEKLADRAPIVQDILAYRQISKLQSTYITG 628 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L I++ Q++HT Y T TGRL+S++PNLQNIP++ + G++IRRAF S P K+ Sbjct: 629 LLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPSAPGWKIF 688 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTIN 805 S+DYSQ+ELR+LAH+ + F DIH A IF + E +V+P MRR AK +N Sbjct: 689 SSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVN 748 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + LA + + R +A ++I+ YF FPG+ +Y+ +Q GYVET+ R Sbjct: 749 FGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR 808 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + EI++ + R+ ER A+N PIQGSAADI + AMI + K+L++ L +MLLQIH Sbjct: 809 RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIRMEKALKERGLRARMLLQIH 868 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DELVFE PEEEI T +++ M+ A + L VPLKV K W Sbjct: 869 DELVFEAPEEEIATLEELVPSIMDSA----VKLDVPLKVESKSGATW 911 Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 109/310 (35%), Positives = 165/310 (53%), Gaps = 14/310 (4%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L L+DG+S ++RAF+A K GL AI GF ML +L+ + ++ Sbjct: 34 QLLLIDGNSIVFRAFFAMHNQMEKFTNQAGLHTAAIYGFKLMLDHILKEVQPDAAL---- 89 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR E Y DYK +R K P L+ QLP VR +A G+ A E+ +EADDII Sbjct: 90 VAFDAGKTTFRTEKYADYKGSRDKTPGELVEQLPYVRKLVEASGLHAYELVNYEADDIIG 149 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEK 178 T ++ GF I++ D+DL QL + T + T + E+ ++ +K G+ P + Sbjct: 150 TLAKEGDQAGFETMIVTGDRDLTQLATDHTTVAVTKRGVTQTEEFTPAYMQEKLGVTPRQ 209 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + ++AL GDS DN PG+ IG KTA L+QEYG+L+ + N + +K+ KR+EN++ + Sbjct: 210 YIDVKALMGDSSDNYPGVTKIGEKTAVSLIQEYGSLDGLYENIAAMKKSKRKENLINEEK 269 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT---TYDCD 295 AR + L +R D P+ I L+ + + + LI + L+F + + D Sbjct: 270 IARECQDLATIRRDAPLAIGLKDIAYQGPDEAALIDLYQELDFKSFLKELGAQEGGAQVD 329 Query: 296 AANIEPVVLD 305 A IE VLD Sbjct: 330 QAPIEYQVLD 339 >gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] Length = 855 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 229/555 (41%), Positives = 330/555 (59%), Gaps = 42/555 (7%) Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 SFK + S + + GK K+I+S+ E+ KIG I+ D LH Sbjct: 340 SFKEGEGYFIASFDFNDEVKGK---VKDIISF-------ENIKKIGAYIQRD---LHFLD 386 Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539 ++G D+ L SY+L+ R +H + + +++L+ R S IP Q Sbjct: 387 CKIKGEVFDVSLASYLLNPERQNHSLDILIREYLN---------RTSFIP---------Q 428 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 ++A + L +L ++ E+L V ++ P+I V+ ME GI++D++ LK +S Sbjct: 429 KYA----AYLFPLKTILEERIKKEELEFVLFNIETPLIPVLYSMEKWGIKVDKEYLKSLS 484 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 E + + LEE IY+L+G KFNL+SPKQL ++LF +LK PSG K KTG + T++ L+ Sbjct: 485 DEFCERIKKLEEEIYELAGMKFNLNSPKQLSEVLFERLKLPSGKKGKTG-YSTSSLVLQN 543 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + +PI+ IL++R+L K+KSTY D++PN IN +T RVHT ++ T TGR++S EPN Sbjct: 544 L-LNAHPIVIKILQYRELYKLKSTYIDAIPNLINSQTGRVHTKFNPTGTATGRISSSEPN 602 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPIK++ G+KIRRAFI+ +S DYSQIELRI+AH+++ L F+ DIHR Sbjct: 603 LQNIPIKSEEGRKIRRAFIADDGYYFVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHR 662 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 AAEIFGV ++V +R AK +NF IIYGIS F L+ I EA +I YF + Sbjct: 663 RTAAEIFGVPEDEVDDLLRSRAKAVNFGIIYGISSFGLSETASITPEEAEKFIDSYFKHY 722 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 P + +I+KT R+ YV+T+FGR+ + EI S +RN ER AINAPIQG+AADI Sbjct: 723 PRVKLFIDKTIYEAREKLYVKTLFGRKRYIPEIRSINKQVRNAYERIAINAPIQGTAADI 782 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + AMI ++K +E+ L +++LLQIHDEL+ EVPEEE+ + MEK + L Sbjct: 783 IKLAMIEIYKEIEEKNLKSRILLQIHDELILEVPEEEMEFTPLMAKEKMEKV----VELS 838 Query: 960 VPLKVNIKVSNNWQE 974 VPL V I V N E Sbjct: 839 VPLVVEISVGKNLAE 853 Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/213 (39%), Positives = 123/213 (57%), Gaps = 11/213 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + ++DGSS IYR +YA P L K+ L NA+ GF +L K +++ + + + + FD Sbjct: 21 ILVIDGSSIIYRVYYALPPLKTKNGEL-TNALYGFIRILLKAVEDFKPDLLG----IAFD 75 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+ IY +YKA RP + + L Q+P +R + IP +E G+EADDIIA T Sbjct: 76 RPEPTFRHVIYKEYKAKRPPMKDDLKAQIPWIREFLRLNDIPILEEPGYEADDIIA--TI 133 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYD---TVKEEKI-DIEHVIKKWGIPPEKMVCL 182 I + I+S D DL+QLVS T L + E I D + V +++G+ P+K+ Sbjct: 134 IKRYKDDLKYILSGDLDLLQLVSDKTFLIHPQRGITEFTIYDPKAVKERFGVEPKKIPLY 193 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215 + L GD DNIPGI GIG K A+ +L++ LE Sbjct: 194 KVLVGDESDNIPGINGIGPKKASKILEKISTLE 226 >gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1] gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1] Length = 883 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 208/535 (38%), Positives = 322/535 (60%), Gaps = 25/535 (4%) Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500 K++ + L+ LK E E K H+ K +LH + I ++ D M+ +Y+L+ Sbjct: 368 KDSDSDPCLTVLKAICECESVKKYFHDAKQALWMLHHHSIELKALAADTMVSAYLLNPTA 427 Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 S++DI +A + L +P ++ + + I +L L KL Sbjct: 428 SNYDINDVALEHLGMV-----------LP------AEGETAMASRAEAIRRLAQKLFEKL 470 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 + + +++ P++ ++S+MEI G+ +D+ L+ +S E+ +L I++L+GE Sbjct: 471 AERQEDRLLTQVELPLVRILSEMEIAGVAVDKQGLQDMSVELQTVTETLTTKIHELAGEN 530 Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 FN++SPKQLG ILF KLK P KTKTG + T A+ LE++ ++ I+ ILE+RQ++K+ Sbjct: 531 FNINSPKQLGPILFEKLKLPVLKKTKTG-YSTDAEVLEKL-AEEHEIVALILEYRQMAKL 588 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 KSTY D L ++ +T R+H+ + T TGRL+S EPNLQNIPI+ + G+KIR+ FI Sbjct: 589 KSTYTDGLAALVDPQTGRLHSTFHQTVTATGRLSSAEPNLQNIPIRLETGRKIRKVFIPR 648 Query: 741 PTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 LI +ADYSQIELR+LAH+++ F DIH A+E+FGV +++V+ +MR Sbjct: 649 QRGNLILTADYSQIELRVLAHMSQDESFLDAFRQGQDIHTRTASEVFGVPMDQVTSEMRS 708 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK +NF I+YGIS F LA L++ R EA YI YF R PG+ +YI++ ++ GYV Sbjct: 709 RAKAVNFGIVYGISDFGLARDLKVSRKEAQGYIDHYFARCPGVRQYIDRVIKEAKETGYV 768 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 T+ RR + E+ S +IRN ERAA+N PIQG+AADI + AM+ + + L++ L+++ Sbjct: 769 NTLLNRRRYLPELFSKNFNIRNFGERAAMNTPIQGTAADIIKLAMVKISQQLKEQNLSSQ 828 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+LQ+HDEL+F+ PE EI + ++ SME A + L VPL V+IK+ NW E Sbjct: 829 MVLQVHDELIFDAPENEIESLIMLVRQSMENA----LQLDVPLVVDIKLGPNWYE 879 Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/291 (40%), Positives = 163/291 (56%), Gaps = 16/291 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + ++DG+S I+RAF+A PLLS G+ NA+ GF NM+ K++ KE AV FD Sbjct: 6 IIIIDGNSLIHRAFHAIPLLSNSK-GVITNAVYGFTNMVLKVI----KEQEPGLVAVAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFRN+ Y YK R P+ L PQ L R A IP E+ GFEADD+I T Sbjct: 61 KGKTTFRNQEYAAYKGTRKATPDELRPQFILARDILGAMRIPFFELDGFEADDLIGTIAC 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AE G V I++ D+D +QLVSP T + T K + D V K+G+ P ++V L Sbjct: 121 QAEATGLNVLILTGDRDALQLVSPKTKVMLTRKGITEIDLFDEGKVWDKYGVTPSQVVDL 180 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYAET 239 + L GD+ DNIPG+ GIG KTA++L++EYG++E IL N ++ QK R N E Sbjct: 181 KGLQGDTSDNIPGVAGIGEKTASVLIKEYGSVEEILKNIDKLSPRHQKLLRGN----EEI 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 A LS+KL + DVP+ + L + +L+ K LEF LI ++ + Sbjct: 237 ALLSKKLATIIRDVPMELDLSECSWHGPDNQKLLEIAKELEFKTLIKQLTS 287 >gi|256112628|ref|ZP_05453549.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] gi|265994069|ref|ZP_06106626.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] gi|262765050|gb|EEZ10971.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 281 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 174/281 (61%), Positives = 226/281 (80%), Gaps = 3/281 (1%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS +I+RA++A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLTRKTDGLPVGAVSGFCNMLWKLLKDARNTDVGVV 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR EIYPDYKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 DD+IATY +AEK G VTIIS+DKDLMQLV+P+ +YD++K+++I I VI+KWG+PPE Sbjct: 121 DDLIATYARLAEKAGGDVTIISSDKDLMQLVTPSVSMYDSMKDKQISIPEVIEKWGVPPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 KM+ LQ+LTGDS DN+PGIPGIG KTAA LL+E+G+L+ +L AS IKQ KRRENIL +A Sbjct: 181 KMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNKRRENILAFA 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278 + +++R+LV L+TDVP+ I L+ L+LE NGP+LI FLKA Sbjct: 241 DQTKIARELVTLKTDVPLDIDLDGLVLEPQNGPKLIGFLKA 281 >gi|169831562|ref|YP_001717544.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C] gi|169638406|gb|ACA59912.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C] Length = 878 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 210/528 (39%), Positives = 316/528 (59%), Gaps = 25/528 (4%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIAS 507 EIL+ +++ F + K HN K + ++ F D M+ +Y+++ ++ + Sbjct: 360 EILAGVRRLFADAAVAKHMHNAKDFLRWAPDFDLANICF-DSMVAAYLVNPLAANQQLED 418 Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + ++L+ +L + P ++ I +L+ +LR +L +L + Sbjct: 419 VVHQYLNL----VLVPDGPAAPATA-------------ADCIRRLYPVLRAELRGYELDY 461 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++R++ P+ V++ ME+ G+ +D+D L+ +S E L I L+GE FNL+SP+ Sbjct: 462 LFDRVELPLTRVLADMELAGVAVDRDQLEALSEEFGTRAGELAARICTLAGEDFNLNSPR 521 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P+G KTKTG + T A L + + I +LE+RQL K+K+TYAD Sbjct: 522 QLGYILFEKLGLPAGKKTKTG-YSTDAGVLLDL-AEKHEIAALLLEYRQLIKLKTTYADG 579 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLI 746 L ++ T R+HT T TGRL+S EPNLQNIPI+ + G++IR+ FI P + L+ Sbjct: 580 LAALVDPATGRLHTTLHQTVTNTGRLSSAEPNLQNIPIRMEEGRRIRKVFIPRDPARVLL 639 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 +ADYSQIELRILAH++ L F + DIH AAE+FGV +E V+P+MR AK +NF Sbjct: 640 TADYSQIELRILAHLSGDPALITAFRDEQDIHARTAAEVFGVPLEMVTPEMRSRAKAVNF 699 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 IIYGIS F LA L++ R+EA +YI+RYF R PG+ EYI+ R+ GYV T RR Sbjct: 700 GIIYGISDFGLARDLKVTRAEAREYIQRYFARLPGVKEYIDTAIRSARERGYVTTALNRR 759 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 E+ S ++R+ ERAA+N PIQG+AADI + AM+ +H + + L T M+LQ+HD Sbjct: 760 RPLPELFSANHTVRSFGERAAVNTPIQGTAADIIKLAMVKIHARMRERNLKTLMILQVHD 819 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EL+F+VP EE+ T + ++ ME LP L VPL V++K+ +NW E Sbjct: 820 ELLFDVPAEEVCTVAPLVKAEME-TVLP---LNVPLTVDLKIGHNWYE 863 Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 105/286 (36%), Positives = 166/286 (58%), Gaps = 10/286 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DG+S ++RA++A P L+ GLP NA+ GF NML +++ + + IA V FD Sbjct: 4 FLVIDGNSLLHRAYHAIPPLT-TSGGLPTNAVYGFTNMLLRVITEEQPDMIA----VAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +TFR++ + +YKA RP +P+ L PQLP+++ A I E +G+EADDII T Sbjct: 59 KGRITFRHDTFQEYKAQRPPMPDDLRPQLPILKDVLGALRISIHEAEGYEADDIIGTLVR 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 +A + G I++ DKD++QLV P T T K E+ D+ +++GI P ++ L Sbjct: 119 VASENGHDSLILTGDKDILQLVGPHTQALLTRKGITELERYDMAKTRERFGITPAQLADL 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+PGIG K AA LL ++G LE++L N + + R++ + + + AR+ Sbjct: 179 KGLVGDPSDNIPGVPGIGPKIAARLLADHGRLESVLENLDGLPPRVRQQ-LENFGDQARM 237 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 S+KL + T VP + + + P L+ LEF L+ R+ Sbjct: 238 SKKLATIDTGVPGLGKEDLKVWPGPDKPALLEIFNKLEFRSLVRRI 283 >gi|299783433|gb|ADJ41431.1| DNA-directed DNA polymerase [Lactobacillus fermentum CECT 5716] Length = 886 Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust. Identities = 215/527 (40%), Positives = 319/527 (60%), Gaps = 16/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LKK E+ K N K + LHR G+ + G D++L SY+L++ +++D+ +A Sbjct: 364 LKKLLEDPAVEKDVFNAKAQLVGLHRLGVDLAGVNFDLLLASYLLNTSENANDLGVLAAA 423 Query: 512 WLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + T +E+ K K +IP D D H + + I L L +L + L Sbjct: 424 HDYHQVQTDEEVYGKGAKRAIPAD---DEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLP 480 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +YE +++P+ V++ MEITGI +D LK++ +++ + LE+ IY +GE+FN++SPK Sbjct: 481 LYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVEREAELEQAIYQEAGEEFNINSPK 540 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF K+K P KTKTG +TA D+ + PI+++IL +RQ+SK++STY Sbjct: 541 QLGVILFEKMKLPVIKKTKTGY--STAVDVLEKLADRAPIVQDILAYRQISKLQSTYITG 598 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L I++ Q++HT Y T TGRL+S++PNLQNIP++ + G++IRRAF S P K+ Sbjct: 599 LLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPSAPGWKIF 658 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTIN 805 S+DYSQ+ELR+LAH+ + F DIH A IF + E +V+P MRR AK +N Sbjct: 659 SSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVN 718 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + LA + + R +A ++I+ YF FPG+ +Y+ +Q GYVET+ R Sbjct: 719 FGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR 778 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + EI++ + R+ ER A+N PIQGSAADI + AMI + K+L++ L +MLLQIH Sbjct: 779 RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIRMEKALKERGLRARMLLQIH 838 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DELVFE PEEEI T +++ M+ A + L VPLKV K W Sbjct: 839 DELVFEAPEEEIATLEELVPSIMDSA----VKLDVPLKVESKSGATW 881 Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 109/310 (35%), Positives = 165/310 (53%), Gaps = 14/310 (4%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L L+DG+S ++RAF+A K GL AI GF ML +L+ + ++ Sbjct: 4 QLLLIDGNSIVFRAFFAMHNQMEKFTNQAGLHTAAIYGFKLMLDHILKEVQPDAAL---- 59 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR E Y DYK +R K P L+ QLP VR +A G+ A E+ +EADDII Sbjct: 60 VAFDAGKTTFRTEKYADYKGSRDKTPGELVEQLPYVRKLVEASGLHAYELVNYEADDIIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEK 178 T ++ GF I++ D+DL QL + T + T + E+ ++ +K G+ P + Sbjct: 120 TLAKEGDQAGFETMIVTGDRDLTQLATDHTTVAVTKRGVTQTEEFTPAYMQEKLGVTPRQ 179 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + ++AL GDS DN PG+ IG KTA L+QEYG+L+ + N + +K+ KR+EN++ + Sbjct: 180 YIDVKALMGDSSDNYPGVTKIGEKTAVSLIQEYGSLDGLYENIAAMKKSKRKENLINEEK 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT---TYDCD 295 AR + L +R D P+ I L+ + + + LI + L+F + + D Sbjct: 240 IARECQDLATIRRDAPLAIGLKDIAYQGPDEAALIDLYQELDFKSFLKELGAQEGGAQVD 299 Query: 296 AANIEPVVLD 305 A IE VLD Sbjct: 300 QAPIEYQVLD 309 >gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1] gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1] Length = 875 Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust. Identities = 215/529 (40%), Positives = 322/529 (60%), Gaps = 18/529 (3%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 S K++ E+E K + K + L GI ++G + D++L +Y+L+ ++ D+A++A Sbjct: 354 SRFKRWLEDEQCKKSVFDAKRAIVALKWNGIELKGVDFDLLLAAYLLNPTDANGDVAAVA 413 Query: 510 QKWLSYTR----KEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 K YT +E+ K K +IP + + EH + + I L +L + Sbjct: 414 -KTKQYTDVQSDEEVYGKGAKQAIPPTNV----LAEHLVRKAKAIASLKETYIQELKRNE 468 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 + L+ P+ +++QME G+++D D L+Q+ E + L +E+ IY+L+G FN++ Sbjct: 469 QFELLVHLELPLTFILAQMEFYGVKVDVDRLEQMGKEFTAQLEQIEQRIYELAGTTFNIN 528 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG ILF KL+ P KTKTG + T+A LE++ + II+ IL +RQL K++STY Sbjct: 529 SPKQLGTILFEKLQLPIVKKTKTG-YSTSADVLEKL-APYHEIIEQILHYRQLGKLQSTY 586 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 + L + K T +VHT + A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ Sbjct: 587 VEGLMKVVRKDTGKVHTIFQQALTQTGRLSSTEPNLQNIPIRIEEGRKIRQAFVPSSDDW 646 Query: 745 LI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 +I +ADYSQIELR+LAHIA L F + LDIH A +IF V ++V+ MRR AK Sbjct: 647 VIFAADYSQIELRVLAHIANDENLIAAFHHDLDIHTKTAMDIFHVKEDEVTAHMRRQAKA 706 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R EAA++I+RYF +PG+ Y+E+ +Q GYV T+ Sbjct: 707 VNFGIVYGISDYGLSQNLGITRKEAAEFIERYFRSYPGVKRYMEEVVQDAKQKGYVTTLL 766 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I S ++R+ ER A+N PIQGSAADI ++AMI + L + +L T++LLQ Sbjct: 767 HRRRYLPDITSGNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLANRLHEERLQTRLLLQ 826 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+ E P+EEI +I+ ME A ++LRVPLKV+ W Sbjct: 827 VHDELILEAPKEEIELLKKIVPDVMENA----VSLRVPLKVDYHFGPTW 871 Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 122/291 (41%), Positives = 175/291 (60%), Gaps = 9/291 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S YRAF+A PLL G+ NAI GF ML KL++ + +H V Sbjct: 3 NKLVLIDGNSIAYRAFFALPLLHND-KGIHTNAIYGFTMMLMKLIEEEK----PTHILVA 57 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E+Y +YK R K P L Q P +R A+ I E++ +EADDII T Sbjct: 58 FDAGKTTFRHEVYTEYKGGRQKTPPELSEQFPFLRELLDAYNIRTYELENYEADDIIGTL 117 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 AEKEGF V IIS D+DL QL S ++ T K E+ +HV++K+G+ P ++V Sbjct: 118 ATKAEKEGFDVVIISGDRDLTQLASERIHVHVTKKGITDMERYTPKHVLEKYGLTPAQIV 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+ L GD+ DNIPG+PG+G KTA LL+EYG +E++L + I KK +EN+ Y E A Sbjct: 178 DLKGLMGDASDNIPGVPGVGEKTALKLLKEYGTVEHVLASLEHISGKKLKENLQTYHEQA 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 LS++L +R DVP+T+ L+ L + R+ + + L FT L++++ + Sbjct: 238 LLSKQLATIRRDVPLTLSLDELAWHSYDAERVAALFQELGFTSLMDKIGQS 288 >gi|299822773|ref|ZP_07054659.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601] gi|299816302|gb|EFI83540.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601] Length = 903 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 208/513 (40%), Positives = 317/513 (61%), Gaps = 18/513 (3%) Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE-----I 520 ++ K + L+R G+ G D ML SYVLD ++ D AS+A ++ YT+ E Sbjct: 398 YDAKKTMVTLNRLGLPCEGILFDFMLASYVLDPSQTIDDFASVASRY-DYTQVEADELVF 456 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 K K ++P +++V +H + I +L + L + L + + L+ P+ V+ Sbjct: 457 GKGAKYNVP----DETKVADHLARKAVAIAKLEQTVNESLEKNEQLELVDNLELPLTFVL 512 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ++ME+ G+++D + L+++ +E++ L ++E +I++L+G FN++SPKQLG ILF L P Sbjct: 513 AKMEMEGVRVDTERLEEMKSEMAVRLQTIESSIHELAGTTFNINSPKQLGVILFETLGLP 572 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 KTKTG + T A LE + G +PII IL +RQL K++STY + L +K+T +VH Sbjct: 573 PVKKTKTG-YSTAADVLESL-SGKHPIIDEILLYRQLGKLQSTYVEGLLKVTDKKTSKVH 630 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759 T ++ T TGRL+S++PNLQNIPI+ + G+KIR+ F+ S P K+ SADYSQ+ELR+LA Sbjct: 631 TRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSHPGWKMFSADYSQVELRVLA 690 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 HI++ L F N DIH A ++F V+ +V MRR AK +NF I+YGIS + L+ Sbjct: 691 HISQDENLVYAFRNDYDIHTKTAMDVFHVSEAEVDSLMRRQAKAVNFGIVYGISDYGLSQ 750 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A D+I RYF +P + Y+E+ ++ GYVETI RR + EI S ++ Sbjct: 751 NLGITRKAAKDFIDRYFASYPDVKVYMEEIVRSAKEKGYVETILHRRRYIPEITSRNFNV 810 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER A+N PIQGSAADI ++AM+ + + LE ++ K+LLQ+HDEL+FE PE EI Sbjct: 811 RSFAERTAMNTPIQGSAADIIKQAMLLMDERLESEQMEAKLLLQVHDELIFEAPEAEIAK 870 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++I+ ME A + L VPLKV+ ++W Sbjct: 871 LAEIVPDVMENA----VALSVPLKVDSAHGDSW 899 Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 170/307 (55%), Gaps = 11/307 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S RAFYA PLL+ G+ NA+ GF ML +++ + +H V Sbjct: 28 NKLILIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLINVIEKEK----PTHALVA 82 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR++ + YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 83 FDAGKTTFRHKTFKAYKGGRQKTPSELSEQFPFIRELLDAYSIARYELPDYEADDIIGTL 142 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 AEKE F V +I+ D+DL QL S +Y T K EK E + +K+ + P +++ Sbjct: 143 AREAEKEAFEVIVITGDRDLTQLASSHITVYITKKGITDMEKNTPESLQEKYQLTPAQII 202 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239 ++ L GDS DNIPGIPG+G KTA LL +YG +E++L +AS I KK +E ++E E Sbjct: 203 DMKGLMGDSSDNIPGIPGVGEKTALKLLHQYGGTVESVLEHASEISGKKLQEKVMENKEL 262 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS++L + T+ P+ + + + ++I LK + FT L+ ++ D + I Sbjct: 263 ALLSKELATINTEAPVEVKIADTAYSGYDTEKVIPLLKEMNFTSLLKNISAE-DPEEEKI 321 Query: 300 EPVVLDI 306 E +D+ Sbjct: 322 ELQGIDV 328 >gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] Length = 878 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 205/492 (41%), Positives = 303/492 (61%), Gaps = 19/492 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L +Y+LD + + +A ++L E K +K ++ + + Sbjct: 399 DVSLAAYLLDPLENGYPPQKLAARYLDRILPEEPKKKKGEAVCNR-------DFSCAAVR 451 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 + L+ LL KL L H+YE L+ P+ +++ME TG+ +D L + E + + Sbjct: 452 TLYDLYPLLDEKLKEASLDHLYEDLELPLAYTLARMERTGVAVDLQALDAMKTEFRERIG 511 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 +LE+ IY L+GE+FNL+SPKQLG ILF KL P+ KTKTG + T A+ LE++ + + Sbjct: 512 ALEQEIYSLAGEEFNLNSPKQLGQILFDKLGLPALKKTKTG-YSTDAKVLEEL-APHHEV 569 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 + IL++R L KI +TY + L +N++T R+HT ++ T TGRL+S EPNLQNIPI+ Sbjct: 570 VAKILKYRTLIKILTTYLEGLSKLVNEQTGRIHTHFNQTVTATGRLSSTEPNLQNIPIRL 629 Query: 728 DLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 + G+++RRAF+ P KK L+SADYSQIELRILAH++K L F DIHR AAE Sbjct: 630 EEGRRVRRAFV--PGKKGNLLLSADYSQIELRILAHVSKDPVLIDSFRKEEDIHRRTAAE 687 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +FGV E V+P++R AK +NF I+YGIS + L+ QL+IPR EA +YI RYF R PG+ + Sbjct: 688 VFGVLPEDVTPELRDRAKAVNFGIVYGISDYGLSQQLKIPRQEAKEYISRYFERLPGVRD 747 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 +I ++NGYV T+ RR + +IN+ + R+ ER A+N PIQG+AADI + AM Sbjct: 748 FIHNVVEDAKKNGYVTTLLNRRRYLPDINAKNFNQRSFAERTAMNTPIQGTAADIIKLAM 807 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 + V ++L +M+LQ+HD+LVFEV EE + ++++ ME A + L VPL V Sbjct: 808 LRVEEALAGMD-DVQMVLQVHDDLVFEVKEESLINVARLVKKQMESA----LELAVPLTV 862 Query: 965 NIKVSNNWQEEN 976 ++K NW E N Sbjct: 863 DVKAGLNWAEMN 874 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 104/292 (35%), Positives = 162/292 (55%), Gaps = 10/292 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M+++ ++DGSS +YRAF+A PLL + GL NA+ GF +ML K+L + + + Sbjct: 1 MKEKGTFLIIDGSSLLYRAFFALPLLQTRQ-GLYTNAVYGFTSMLLKVLDEEKPD----Y 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD A TFR++ Y +YK R K P L Q+ VR A IP +E +G+EADD+ Sbjct: 56 AVVAFDKAAPTFRHKEYSEYKGKRDKTPGELNEQISHVREVLAALHIPIVETEGYEADDL 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPP 176 I T A I+S D D+ QLV P +Y + E+ + + + +++G+ Sbjct: 116 IGTMAKNARDIDIRPLIVSGDADIFQLVDIPAEVIYTKRGITQVERYNEDKLQERYGLTA 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E+ + + L GD DNIPG+PG+G KTA LL+++G LE I N +K K REN+ +Y Sbjct: 176 EQYIDFKGLKGDPSDNIPGVPGVGEKTAIKLLKQFGTLEKIYENMDELK-GKLRENLTQY 234 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A LS++L + DVP+ ++ ++ + L + LEF L+ ++ Sbjct: 235 KEQAFLSKRLATIVKDVPMEESIKDFARQEPDSDELRRLFEQLEFKSLLEKL 286 >gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] Length = 903 Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust. Identities = 216/612 (35%), Positives = 352/612 (57%), Gaps = 28/612 (4%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 YT + ++++I V++L + + +A ++ A+A+S+ D F Sbjct: 313 YT-MADSQNIDSIVRRLGEAKELALAVSGTPEEAMDARLTALALSS--AAGDACFV---- 365 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 L+ S G+ T E S L ++ K HN KY +L G ++G + Sbjct: 366 ---LAEFIGSASEGQMFAT-EGHSGLAALLGDKKMSKTAHNAKYLMNLLLSAGQEVKGLD 421 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKISDSQVQEHA 542 D M+ +++L G + I + + +I ++ K +I ++ Q+ E A Sbjct: 422 FDTMIAAHLL--GEKNLAIKDLVFEHFGIEIADIENILTRNGKKTI----FNEVQLSEAA 475 Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 ++ +L + +L +L+ ++ R++ P++ ++ ME GI +D DLLK ++ + Sbjct: 476 QLAADYTFRLKGIFAAQLAETRLMDLFARVEMPLLPILLGMERIGIMLDTDLLKAMAEKT 535 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + + LEE+IY +G FN+ SP+QLG ILF +LK P KTKTG + T A+ LE++ Sbjct: 536 GRQIFKLEEDIYAQAGHSFNIGSPQQLGRILFDELKLPVIKKTKTG-YSTGAEVLEELQ- 593 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 G + I+ ILE+R L K+KSTY D+LP +N T+R+HT ++ T TGRL+S EPNLQN Sbjct: 594 GKHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQN 653 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++ ++G++IRRAFI+PP L++ DYSQI+LR+LAH+++ L + F++ DIH A Sbjct: 654 IPVRGEMGREIRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATA 713 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 A + V+ KV+ + RR AKT+NF +IYG+S + L + EA +IK YF ++P + Sbjct: 714 ARLLNVSPSKVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLEEADKFIKAYFEKYPRV 773 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y + K R GYVET+ GRR + EINSP +R ER AIN P+QG++ADI + Sbjct: 774 AVYFAEIKQQARTQGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKL 833 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AM+ + + +++ KL +++LLQ+HDEL+FEVP E+ S +++ +M A + +PL Sbjct: 834 AMVRLDEKIKEEKLKSRLLLQVHDELIFEVPTAELGRMSDLLIETMSGA----VAFEIPL 889 Query: 963 KVNIKVSNNWQE 974 KV +K NW + Sbjct: 890 KVELKSGANWGD 901 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 106/296 (35%), Positives = 159/296 (53%), Gaps = 26/296 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L DG++ ++RA++ P L+ + G V A GF ++L K+L + + + +A+ FD Sbjct: 6 IVLFDGTNLVHRAYHVLPPLAIRKTGEVVGAAFGFASILIKVLTDLKPDC----YAISFD 61 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ YKA RP +P+ L+ QL VR AF +P E GFEADD++ T Sbjct: 62 RKGPTFRHEMFKAYKAQRPPMPDELVSQLGRVRQIVDAFNMPVYEQSGFEADDVLGTLAT 121 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--------------TTCLYDTVKEEKIDIEHVIKKW 172 A G V I S D D MQLV P +T LYD V K+ Sbjct: 122 RAAAAGMEVIIASGDADSMQLVGPDIRILYPGPAGSFASTSLYDEAA--------VRAKY 173 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 G+ PE + +AL GD DNIPG+PGIG KTA L++EYG +E+I N +I ++ Sbjct: 174 GLGPEHIADYKALMGDPSDNIPGVPGIGPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKK 233 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + + AE AR S+ L + D+P+ +E E N +++ + LEF +LI+R+ Sbjct: 234 LADNAEVARDSKILTTIVCDLPLDFSIEECRAEHYNRQKVVDLFRELEFFRLIDRL 289 >gi|169829549|ref|YP_001699707.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] gi|83637842|gb|ABC33726.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] gi|168994037|gb|ACA41577.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] Length = 875 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 212/531 (39%), Positives = 324/531 (61%), Gaps = 22/531 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L+++ E+ +K + K K L R GI + G + D++L SY+ + G S D+A++A++ Sbjct: 356 LRRWLEDSSKIKYMSDSKASKAALKRAGIQLAGVDFDLVLASYINNPGLSGDDVATLARE 415 Query: 512 WLSYTRKE----ILKSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 Y + K K ++P IDK++ +H + + L L L + Sbjct: 416 LGYYDVQADETVYGKGAKRAVPEIDKLA-----QHVSRKAYAVWSLQPKLEALLKENEQF 470 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 +Y+ L+ P+ ++ +ME GI +++ L+++ E++ L+ LE+ IY +GE FN++SP Sbjct: 471 DLYKELELPLAAILGEMESEGITVNRATLEKMGQELNDKLVVLEQEIYAEAGETFNINSP 530 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KL P KTKTG + T A LE++ ++ II+ IL +RQL K++STY + Sbjct: 531 KQLGVILFDKLGLPVIKKTKTG-YSTAADVLEKLKS-EHAIIEYILLYRQLGKLQSTYIE 588 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L I+++ +VHT + A T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+K+ Sbjct: 589 GLLKEIHEKDSKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSKEDW 646 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 L SADYSQIELR+LAH+++ L + F +D+H A ++F V+ E+V MRR AK Sbjct: 647 ILFSADYSQIELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEEEVDSNMRRAAKA 706 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R EAA +I++YF FPG+ +Y++ + NGYV TI Sbjct: 707 VNFGIVYGISDYGLSQNLDITRKEAATFIEKYFASFPGVKQYMDDIVQNAKFNGYVTTIL 766 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I S ++R+ ER A+N PIQGSAADI ++AMI + L+ + K+LLQ Sbjct: 767 NRRRYLPDITSSNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMDARLKKENMQAKLLLQ 826 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDEL+FE P+EEI +I+ ME A I L VPLKV+ + W E Sbjct: 827 VHDELIFEAPKEEIAMLEKIVPEVMENA----IELSVPLKVDFNHGSTWYE 873 Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 109/291 (37%), Positives = 159/291 (54%), Gaps = 10/291 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L L+DG+S YRAF+A PLL+ G+ NA+ GF ML ++L+ + I Sbjct: 1 MTKEK-LLLLDGNSLAYRAFFALPLLTN-DSGIHTNAVYGFTTMLQRILEEEQPTKIL-- 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R K P L Q P +R A+GI E +EADDI Sbjct: 57 --VAFDAGKTTFRHETFTEYKGGRQKTPPELSEQFPYIRKLIDAYGIKQYEQDLYEADDI 114 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T A + V I+S D+DL QL + +Y T K E+ + +K+G+ P Sbjct: 115 IGTLAKEASSQDMDVIIVSGDRDLTQLATEQVTVYITKKGITEIERNTPAFIAEKYGLTP 174 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ ++ L GDS DNIPG+PG+G KTA LL+E+G++E + +K K +E ++ Sbjct: 175 LQIIDMKGLMGDSSDNIPGVPGVGEKTAVKLLKEHGSVEALYEAMDTLKASKMKEKLVAN 234 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 E A +S+KL + TD PITI L L N L++ + L F L+ + Sbjct: 235 EEQAIMSKKLATIYTDAPITISLTDLAYNGPNEEELMNVWRELGFKSLLEK 285 >gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544] gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544] Length = 878 Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust. Identities = 206/505 (40%), Positives = 307/505 (60%), Gaps = 27/505 (5%) Query: 476 LHRYG-ISMRG---FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531 L RY +RG F DI L +Y+L+ RS + + ++QK+L E +S Sbjct: 393 LKRYDQAGVRGQNDFFDIELAAYLLEPERSKYALPELSQKYLQEMAPESFADERS----- 447 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 A+ + I +L+ LL KL E+L H+ + ++ P+++V++ ME G+ ++ Sbjct: 448 ---------RAVWEAKTISRLYPLLGAKLEEEELTHLMKTVELPLVEVLAAMEQNGVYVN 498 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 + L + + E++ L ++E++IY+++G FNL+SPKQLG +LF +L P KTKTG + Sbjct: 499 RAHLAEKTEEVADRLQTIEQSIYEMAGHTFNLNSPKQLGTVLFEELDLPVRKKTKTG-YS 557 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A+ LE + ++PI++ IL +R SK+KSTY D + I T RVHT ++ T TG Sbjct: 558 TNAEVLESLRL-EHPIVEQILAYRLWSKLKSTYLDGITGLIRTDTGRVHTSFNQTVTATG 616 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQ 769 RL+S +PNLQNIP++T+ G+ IR A P L+SADYSQIELR+LAH++ Sbjct: 617 RLSSSDPNLQNIPVRTEEGRMIR-ALFEPGEGYDYLLSADYSQIELRLLAHMSGDENFID 675 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 VF+ DIH AAE+FG+ +E+V+P++RRHAK +NF I+YGIS F LA L I R EA Sbjct: 676 VFKRGQDIHARTAAEVFGIPLEEVTPELRRHAKAVNFGIVYGISDFGLARNLHISRKEAG 735 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 DYI RYF R+PG+ +++K + GYV T+FGRR I S + R + ER A+N Sbjct: 736 DYISRYFERYPGVRAFMDKVVAEAHETGYVTTMFGRRRELPAIKSRNFNQRMLAERMAMN 795 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 PIQG+AAD+ + AMI+ + L++ + +++LLQ+HDELV EV E E+ I+ SME Sbjct: 796 TPIQGTAADVIKLAMIAAYHRLKEAGVKSRILLQVHDELVLEVVESELDVVQAILRESME 855 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 + L VPL ++I NW E Sbjct: 856 HV----VALSVPLIIDIHWGRNWAE 876 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 113/257 (43%), Positives = 151/257 (58%), Gaps = 11/257 (4%) Query: 4 ENHLFLV-DGSSFIYRAFYATPL-LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 E FLV DGSS I+RAFYA P LS H G P AI GF NML KL+ + + +A Sbjct: 8 EQKRFLVLDGSSLIFRAFYALPPDLSDSH-GQPTGAIFGFSNMLTKLIAEQQPDLMA--- 63 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 + FD TFR E Y DYK R K PE LL Q PL+R GIP +E +EADDII Sbjct: 64 -LAFDKSRHTFRTERYADYKGTRDKTPEELLSQFPLLREFAANMGIPFLEKDNYEADDII 122 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177 T A EG+ V +++ D+D +QLV P + T K + D +++G P Sbjct: 123 GTLATQAAAEGYDVRVVTGDRDALQLVRPNLRVLLTKKGISELKDYDTAAFEEEYGFEPL 182 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 K++ L+ L GD+ DNIPGIPG+G KTA+ LL YG++EN+L + + KK +E ++EYA Sbjct: 183 KLIDLKGLMGDTSDNIPGIPGVGPKTASKLLLAYGSVENVLAHVEDVSGKKLKERLMEYA 242 Query: 238 ETARLSRKLVMLRTDVP 254 + ARLS++L + VP Sbjct: 243 DQARLSKELATIELHVP 259 >gi|329667767|gb|AEB93715.1| DNA polymerase I [Lactobacillus johnsonii DPC 6026] Length = 886 Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust. Identities = 213/528 (40%), Positives = 332/528 (62%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L K E++ K +IK + LHR + G + D++L SY++++ +S+D+ +A Sbjct: 367 LHKMLEDKTIKKNVFDIKRTYVGLHRLDLKAEGLDYDMLLASYLVNNENNSNDLGEVAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K +K ++P +D++ EH VI +L L KL + Sbjct: 427 YDDYSVKTDLEVYGKGKKQAVP----NDNEFFEHLAAKVAVIEKLKTQLLEKLKDHEQDD 482 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +YE ++ P+ V+++MEITGI+++ +L Q+ + + L LE IY +GE+FNL+SPK Sbjct: 483 LYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPK 542 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + LEQ+ +PI+ IL++RQ++KI++TY Sbjct: 543 QLGHILFEKLGLPPIKKTKTG-YSTSVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKG 600 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745 L + I + R+HT Y T TGRL+S++PNLQNIP KT+ G++IR+AF+ P TK + Sbjct: 601 LLDCI-QPDGRIHTRYLQTLTTTGRLSSVDPNLQNIPTKTEEGKQIRKAFV-PSTKDGYI 658 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804 S DYSQ+ELR+LAH++ + + F++ DIH A +IF ++ ++V+P MRRHAK + Sbjct: 659 FSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R +A +I+ YF ++P I Y+++ R+NGY ETI Sbjct: 719 NFGIVYGISDYGLSKNLGISRKQAKTFIENYFEQYPQIKNYMDEAIKKARENGYAETIMH 778 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I+S ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TKM+LQ+ Sbjct: 779 RRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQV 838 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 839 HDELIFDVPKDELNTIKKIVPEVMQSA----VKLDVPLIADSNWGHNW 882 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 103/295 (34%), Positives = 165/295 (55%), Gaps = 17/295 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK------HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L R+ DGL NAI F NML ++ K++ ++ Sbjct: 6 LLLIDGNSVAFRAFYA---LYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTNPTN 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD VTFR E+Y DYK R K P L QLP++R + GI + E++ +EADDI Sbjct: 59 VLVAFDAGKVTFRTEMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176 I T + + E G+ V I++ D+DL QL S T + T E +H+ + G+ P Sbjct: 119 IGTLSKMGEDAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPDHMKEVNGVTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + ++AL GD+ DN PG+ +G KTA+ L+Q+YG++E + + +K+ K +EN++ Sbjct: 179 TEFIDMKALMGDNSDNYPGVTKVGPKTASRLIQKYGSIEELYEHVDEMKKSKLKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 + A L++KL + + P+ + L L++ N L + + L F K + + +T Sbjct: 239 KDKAFLAKKLATIDRNSPVEVTLADTKLQEPNIEDLRNLYERLGFKKFLAELGST 293 >gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2] gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2] Length = 878 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/501 (40%), Positives = 316/501 (63%), Gaps = 17/501 (3%) Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDK 532 R+G+ +RG + D+ML +Y+++ + D+ASI Q++ +S + K K +P D Sbjct: 385 RFGVELRGVDFDLMLGAYIVNPSLTYTDMASIVQEYGHNDVSTNEQIYGKGAKKKVPEDA 444 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 I + EH + I ++ L+ KL + +Y++L+ P+ V+ QME G+ +++ Sbjct: 445 I----LHEHIARKARTIWKVRPLIMAKLEDNEQFDLYDKLELPLATVLGQMESLGVMVNR 500 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D L ++ E++ L +E +I+ L+G++FN++SPKQLG ILF KL P+ KTKTG + T Sbjct: 501 DQLVEMGKELAHKLEKIESDIHGLAGQEFNINSPKQLGVILFEKLGLPALKKTKTG-YST 559 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A LE++ G + II +IL +RQL K+ STY + L I++ ++HT + A T TGR Sbjct: 560 AADVLEKLE-GQHEIISHILMYRQLGKLLSTYIEGLLKEIHE-DGKIHTRFQQALTTTGR 617 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 L+S+ PNLQNIP++ + G+KIR+AF+ S P +++ADYSQIELR+LA +++ L Q F Sbjct: 618 LSSINPNLQNIPVRLEEGRKIRKAFVPSEPGWVMVAADYSQIELRVLADMSEDERLVQAF 677 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ DIH A+++F V E+V+ MRR AK +NF I+YGIS + L+ L IPR EAA + Sbjct: 678 KDDRDIHTTTASDVFHVTEEEVTSDMRRAAKAVNFGIVYGISDYGLSQNLNIPRKEAAAF 737 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I+RYF FPG+ Y+ +++G+V T+ RR + +I S ++R+ ER A+N P Sbjct: 738 IERYFASFPGVKSYMTNIVADAKRDGFVTTLMNRRRYLPDITSSNFNLRSFAERTAMNTP 797 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGSAADI ++AMI + ++E L +MLLQ+HDEL+FE P EE+ +++ ME A Sbjct: 798 IQGSAADIIKKAMIDMDAAIEREGLQARMLLQVHDELIFEAPPEELDHLMKLVPEVMENA 857 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 + L VPLKV+I + W Sbjct: 858 ----VKLSVPLKVDIAHGSTW 874 Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/289 (38%), Positives = 168/289 (58%), Gaps = 10/289 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG+S YRAF+A PLL+ +H G+ NA+ GF ML K+L E +H V FD Sbjct: 11 ILLLDGNSLAYRAFFALPLLTNEH-GIHTNAVYGFTMMLQKILD----EEQPTHMIVAFD 65 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ + +YK R K P L Q P +R A+GI E++ +EADDII T + Sbjct: 66 AGKTTFRHKTFSEYKGGRQKTPPELSEQFPYLRKLIDAYGIKRYELENYEADDIIGTLSL 125 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AE+EG V +IS DKDL QL SPTT +Y T K EK +EH+ +K+G+ P +++ + Sbjct: 126 EAEREGDEVVVISGDKDLTQLASPTTTVYITRKGITDIEKYTVEHIKEKYGLTPLQIIDM 185 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD+ DNIPG+PG+G KTA LL +G++E + A ++ K +E ++ + A + Sbjct: 186 KGLMGDASDNIPGVPGVGEKTALKLLAAHGSVEGVY-EAIEQQKGKMKEKLIANEDLAYI 244 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 S++L + PI I ++ L + L+ K L F L+ ++ T Sbjct: 245 SKQLATIERQAPIEIQIDELSYSGPDQDELVKVWKELAFKSLLEKMEYT 293 >gi|190571485|ref|YP_001975843.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018887|ref|ZP_03334695.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357757|emb|CAQ55209.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995838|gb|EEB56478.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 842 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 208/510 (40%), Positives = 310/510 (60%), Gaps = 34/510 (6%) Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 LKI H+I+ + + + +D+M+MSY LD+G+ H I +I LS + Sbjct: 364 LKIVHDIRKIREIFPTIERVLDSIDDLMIMSYSLDTGKHDHSIPNIIAHNLSKNVETF-- 421 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 ++ +++ + L +L EKL +YER D+P++ V+ Sbjct: 422 ----------------------SAKILIAIHEKLTQRLFQEKLFTIYERFDRPLMKVIFD 459 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI ++ L+++S + + + LE +I++L+GEKFN++SPKQL D+LF K++ Sbjct: 460 MEQNGILLNIQKLQELSDKFEQLIAVLENDIHNLAGEKFNIASPKQLSDVLFNKMELSKK 519 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 K+K+G + T + LE + I IL WR LSK+K TY D+L ++ R+HT Sbjct: 520 KKSKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPIDGRIHTS 579 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 +S T TGRL+S PNLQNIPI+++ G IR+AFI+P K+ISADYSQIEL++LAH+A Sbjct: 580 FSTTVTATGRLSSSNPNLQNIPIRSEEGNFIRQAFIAPKGCKIISADYSQIELKLLAHVA 639 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 +T + F N DIH + A ++FGV +++ Q+RR AKTINF IIYGISPF LA +L Sbjct: 640 NVTAFKEAFANRQDIHDITARQVFGV--QEIDEQLRRKAKTINFGIIYGISPFGLAKRLG 697 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 I EAA+YI YF +P I Y+EK + R +GYVET+FGRR +IN+ +R Sbjct: 698 ITFQEAAEYINYYFSCYPEIKVYMEKAVSIARNHGYVETLFGRRCFVRDINNKIPYLRQF 757 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ERAAINAP+QG+AADI +RAMI + L+ + K++LQ+HDEL+ EV E + ++ Sbjct: 758 AERAAINAPLQGTAADIIKRAMIRLFDQLK----SGKIILQVHDELLVEVEESRVQETAK 813 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ ME A + + +PL+V IK+S+NW Sbjct: 814 LMKDIMENA----VEISIPLEVEIKISDNW 839 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 115/291 (39%), Positives = 174/291 (59%), Gaps = 8/291 (2%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 KE ++DG F++RA+Y L+ G+PV A+ GF NM+ K + +S +IA Sbjct: 2 KEKTFTIIDGYGFLFRAYYVLHHLTTTA-GIPVGAVYGFLNMVLKYISHSDYLTIA---- 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 D FR+ +Y +YKANR PE L+PQ ++R A +AF EI+G+EADDIIA Sbjct: 57 --LDSGKKNFRHSLYSEYKANRVTPPEDLIPQFTILREAVEAFNFSYEEIEGYEADDIIA 114 Query: 123 TYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T A E F V ++S+DKDL QL++ ++D +K +D + VI+K+G+ K++ Sbjct: 115 TLAAKYANHEDFKVVVVSSDKDLFQLLNYNILIFDPIKNIYVDEKQVIEKFGVNSNKLLD 174 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L +LTGD+ DNIPG+PGIG KTAA LL ++ +L+NI+ N + I+Q + R + E+ E A Sbjct: 175 LFSLTGDASDNIPGVPGIGPKTAAKLLDKFDSLDNIIENINNIEQTRVRNILTEHKEKAL 234 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 +SR+L+ L V + + + N +L+SFLK EF LI +V + Sbjct: 235 ISRELLSLCKKVDLQHDIVKYEVHPPNMEKLLSFLKKYEFNSLIGKVEKLF 285 >gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522] gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522] Length = 874 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 214/526 (40%), Positives = 326/526 (61%), Gaps = 16/526 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 KK+ +E K N K + L IS+RG DI + SY++D SSH++A I+ + Sbjct: 355 FKKWANDEKNEKWIFNAKQAIVSLGWNDISLRGVTFDIQIASYLIDPSASSHEMADISNR 414 Query: 512 WLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 SYT K K +K +P ++I V +H + + I L L +L + Sbjct: 415 KRSYTVKSDEAVYGKGKKRQVPEEEI----VAQHLVRKAAAINVLKEELESELKENEQFE 470 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ L+ P+ V+ ME+ GI I+++ L Q+ +S L ++E+ I++L+G +FN++SPK Sbjct: 471 LFKDLEMPLSIVLGHMEMNGISINKEELLQMGETLSDKLSTMEKEIHELAGVEFNINSPK 530 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG+ILF KL+ P KTKTG + T+A LEQ+ + I++ IL +RQL K+ STY + Sbjct: 531 QLGEILFDKLQLPVVKKTKTG-YSTSADVLEQLR-DKHEIVEKILLYRQLGKLNSTYIEG 588 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI- 746 L I++++ ++HT ++ A T TGRL+S EPNLQNIPI+ + G+KIRRAF+ +I Sbjct: 589 LLKVIHQKSGKIHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRRAFVPERENAVIF 648 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 +ADYSQIELR+LAHI+ L F+ ++D+H A ++F V+ ++V+ MRR AK +NF Sbjct: 649 AADYSQIELRVLAHISNDENLTNAFKENMDVHTKTAMDVFHVSADEVTSLMRRTAKAVNF 708 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YGIS + L+ L I R EA +I RYF +PG+ EY+E R NGYV T+ RR Sbjct: 709 GIVYGISDYGLSQNLGITRKEAKKFIDRYFDSYPGVKEYMESIVEEARVNGYVTTMLHRR 768 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + EI S ++R+ ER A+N PIQGSAADI ++AM+ + + +++ L + +LLQ+HD Sbjct: 769 RYLPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMVKMEEEMKEKGLKSTLLLQVHD 828 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EL+FEV +EEI T +++ ME A +NL VPLKV+ + W Sbjct: 829 ELIFEVVQEEIETMKELVPKVMENA----VNLAVPLKVDFSFGDTW 870 Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 113/288 (39%), Positives = 169/288 (58%), Gaps = 9/288 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDG+S YRAF+A PLL+ + G+ NA+ GF ML K+L+ + +H V Sbjct: 2 NKLVLVDGNSIAYRAFFALPLLNNEK-GVFTNAVYGFTTMLLKILEEEK----PTHMLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R K P L QLP++R +AF I E++ +EADDII T Sbjct: 57 FDAGKTTFRHNTYKEYKGKRQKTPGELAEQLPVMRDLLKAFNITYYEVENYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 + A K + V I+S DKDL+QLVS + T K + D++ + +K+GI PE+++ Sbjct: 117 STKASKSNWEVKIVSGDKDLLQLVSENVKVALTRKGITNVDTYDLQMIDEKYGIKPEQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++ L GD+ DNIPG+PG+G KTA LL+++G +E + + + KK +E + E + A Sbjct: 177 DMKGLMGDASDNIPGVPGVGEKTALKLLKQFGTVEKLYESLEDVSGKKLKEKLAENKDNA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +S+KL + + P+TI E L D N + + K LEF L+ R+ Sbjct: 237 FMSKKLATIELNSPVTIDFEDTKLTDPNNKEVTALFKELEFNSLLERI 284 >gi|116332033|ref|YP_801751.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125722|gb|ABJ76993.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 921 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/516 (37%), Positives = 323/516 (62%), Gaps = 11/516 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519 K+G NIKYD +VL +G + + D ML SYV+ H++ +A+ L+Y T + Sbjct: 410 KVGQNIKYDLIVLENHGFILNNIQFDTMLASYVIQPEGRRHNMDVLAKDLLNYDTITYDD 469 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 ++ + K + I QV E+A E++++ +L+ + R K+ + + ++ P+I V Sbjct: 470 LVGTGKKKKELTDIDPEQVAEYAAEDADITFRLYQIFRKKIKESGVEPILRNIEMPLISV 529 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 +++ME TGI +D ++++ + + + LE I+ +G FN++S K+L ILF LK Sbjct: 530 LAKMEKTGIALDVPYFEELARDFDREIRHLESEIHRQAGRSFNIASTKELQKILFDDLKL 589 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 + KT+TG + T + LE++ G++PI++ +L++R+ +K+KSTY D+LP +N RT R+ Sbjct: 590 KTVKKTQTG-YSTDHEVLEEL-LGEHPIVEKLLDYRKYTKLKSTYVDALPKMVNPRTGRI 647 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRIL 758 HT Y+ TGRL+S +PNLQNIPI+ G+ +R+ F + +++S DYSQIELRI+ Sbjct: 648 HTSYNQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSDEYEILSLDYSQIELRIM 707 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AHI+K + + + + LDIH AA ++GV ++V+P+MR AK +NFS+IYG++P+ L+ Sbjct: 708 AHISKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTPYGLS 767 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 LRIPR EA +I+RY ++PG+ Y++ F +NGYV+T+ GRR +INS S Sbjct: 768 RNLRIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPIVDINSTHKS 827 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 + +R AIN+P+QG++AD+ + AMI++H+ +E ++MLLQ+HDELVFEV ++E Sbjct: 828 AKEAAKRVAINSPVQGTSADMIKIAMINIHEDIEKKHYRSRMLLQVHDELVFEVHKKE-- 885 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + SM+K + L +P+ V K NW E Sbjct: 886 --KEEFKISMKKHMENAMPLDLPILVEGKFGVNWDE 919 Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 151/296 (51%), Gaps = 19/296 (6%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L ++DG +F++RA+YA L+ G P A GF ML+KLLQ+ +H A+ Sbjct: 4 LLIIDGHAFVFRAYYAFGASNLTNSKTGKPSGATFGFFKMLFKLLQDY----TPTHVAMT 59 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT- 123 FD R + + DYKANR +PE L PQ+ V + G ++++G EADDII T Sbjct: 60 FDPGGPLERGKTFEDYKANRKPMPEDLRPQIKEVMETLEKIGFKVLKMEGHEADDIIGTL 119 Query: 124 ---YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIP 175 Y IA++ + I S DKDL QL+ K+ +ID V ++ GI Sbjct: 120 CETYRTIAKE----ILIFSGDKDLYQLLEKKNIKMLRGKKGVTEFVEIDSAWVKEELGID 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 +++ + GD+ DNIPG+ GIG K A+ LLQEY L+ I N ++IK + + E Sbjct: 176 VKQIPDYMGIVGDTSDNIPGVKGIGDKGASKLLQEYKTLDGIYKNLNKIKNPSIQTKLSE 235 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 E A LS++L +R D+ + I + + D I + K+ + L +A + Sbjct: 236 QKENAYLSKQLATIRRDLKLGITEKDIETPDYKSDHAIVYFKSQGYNVLSKDLAKS 291 >gi|116327352|ref|YP_797072.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120096|gb|ABJ78139.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 921 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/516 (37%), Positives = 323/516 (62%), Gaps = 11/516 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519 K+G NIKYD +VL +G + + D ML SYV+ H++ +A+ L+Y T + Sbjct: 410 KVGQNIKYDLIVLENHGFILNNIQFDTMLASYVIQPEGRRHNMDVLAKDLLNYDTITYDD 469 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 ++ + K + I QV E+A E++++ +L+ + R K+ + + ++ P+I V Sbjct: 470 LVGTGKKKKELTDIDPEQVAEYAAEDADITFRLYQIFRKKIKESGVEPILRNIEMPLISV 529 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 +++ME TGI +D ++++ + + + LE I+ +G FN++S K+L ILF LK Sbjct: 530 LAKMEKTGIALDVPYFEELARDFDREIRHLESEIHKQAGRSFNIASTKELQKILFDDLKL 589 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 + KT+TG + T + LE++ G++PI++ +L++R+ +K+KSTY D+LP +N RT R+ Sbjct: 590 KTVKKTQTG-YSTDHEVLEEL-LGEHPIVEKLLDYRKYTKLKSTYVDALPKMVNPRTGRI 647 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRIL 758 HT Y+ TGRL+S +PNLQNIPI+ G+ +R+ F + +++S DYSQIELRI+ Sbjct: 648 HTSYNQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSDEYEILSLDYSQIELRIM 707 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AHI+K + + + + LDIH AA ++GV ++V+P+MR AK +NFS+IYG++P+ L+ Sbjct: 708 AHISKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTPYGLS 767 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 LRIPR EA +I+RY ++PG+ Y++ F +NGYV+T+ GRR +INS S Sbjct: 768 RNLRIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRLIVDINSTHKS 827 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 + +R AIN+P+QG++AD+ + AMI++H+ +E ++MLLQ+HDELVFEV ++E Sbjct: 828 AKEAAKRVAINSPVQGTSADMIKIAMINIHEDIEKKHYRSRMLLQVHDELVFEVHKKE-- 885 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + SM+K + L +P+ V K NW E Sbjct: 886 --KEEFKISMKKHMENAMPLDLPILVEGKFGVNWDE 919 Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 151/296 (51%), Gaps = 19/296 (6%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L ++DG +F++RA+YA L+ G P A GF ML+KLLQ+ +H A+ Sbjct: 4 LLIIDGHAFVFRAYYAFGASNLTNSKTGKPSGATFGFFKMLFKLLQDY----TPTHVAMT 59 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT- 123 FD R + + DYKANR +PE L PQ+ V + G ++++G EADDII T Sbjct: 60 FDPGGPLERGKTFEDYKANRKPMPEDLRPQIKEVMETLEKIGFKVLKMEGHEADDIIGTL 119 Query: 124 ---YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIP 175 Y IA++ + I S DKDL QL+ K+ +ID V ++ GI Sbjct: 120 CETYRTIAKE----ILIFSGDKDLYQLLEKKNIKMLRGKKGVTEFVEIDSAWVKEELGID 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 +++ + GD+ DNIPG+ GIG K A+ LLQEY L+ I N ++IK + + E Sbjct: 176 VKQIPDYMGIVGDTSDNIPGVKGIGDKGASKLLQEYKTLDGIYKNLNKIKNPSIQTKLSE 235 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 E A LS++L +R D+ + I + + D I + K+ + L +A + Sbjct: 236 QKENAYLSKQLATIRRDLKLGITEKDIETPDYKSDHAIVYFKSQGYNVLSKDLAKS 291 >gi|114567529|ref|YP_754683.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338464|gb|ABI69312.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 866 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 205/527 (38%), Positives = 321/527 (60%), Gaps = 29/527 (5%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI 508 L ++K E+ K HN K+ +++L R+GI +RG D ML++YV D ++ + Sbjct: 365 LQWIKALLESAVIKKYLHNAKFIQVLLLRHGIELRGVAGDTMLLAYVDDPAFEGDELDAC 424 Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 +K L I ++ +++ N I +L+ L ++ E L + Sbjct: 425 LKKHLQLN---IAENNLAAL-----------------VNTIRELYFQLEGQIPAE-LREL 463 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 + ++ PM +V+++ME G+++++ L ++S E++ + EE I++L+G FN++SPKQ Sbjct: 464 LQEVEMPMSEVLARMEFCGVKVERSTLARISEELASGIAGHEERIFELAGSSFNINSPKQ 523 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LG +LF L K KTG + T A+ LE++ ++ II +IL +RQLSKIKSTYAD+L Sbjct: 524 LGKVLFEDLGLRVIKKGKTG-YSTGAEVLEEL-YQEHEIIAHILNYRQLSKIKSTYADAL 581 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLIS 747 I+ T RVHT + A T TGRL+S+EPNLQNIPI+ + G++IR+AF++P P +++ Sbjct: 582 QELIHPETGRVHTIFKQAQTATGRLSSVEPNLQNIPIRMEEGRRIRQAFVAPGPDWLIMA 641 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQI+LR LAHI+ L + F++ +DIH A EIF V +E V ++RR AK +NF Sbjct: 642 ADYSQIDLRSLAHISGDERLIETFKSGVDIHTRTAVEIFHVPVEWVDSELRRRAKAVNFG 701 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 IIYGIS F LA + R EA YI Y + +PG+ +Y+E F R++GYVET+ RR Sbjct: 702 IIYGISDFGLARDTGVSRKEARKYIDNYLNSYPGVKKYMEDIVEFGRRHGYVETLLKRRR 761 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + E+N+ ++ R A+N P+QG++ADI + AMI V + + +L ++LLQ+HDE Sbjct: 762 YLPELNARNKMVQAFGRRMALNTPVQGTSADIIKLAMIKVDEEIRKRRLQARLLLQVHDE 821 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+ E+P E+ S ++ ME AC +L+VPL+V++K NW E Sbjct: 822 LLLELPRTELEEVSGLLRDCMENAC----SLKVPLEVSLKTGPNWYE 864 Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 115/285 (40%), Positives = 165/285 (57%), Gaps = 9/285 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L+DG+S +YRAFYA PLL G+ N + GF M ++L E +H AV Sbjct: 3 DKFILIDGNSLLYRAFYALPLLHNSA-GVYTNGVYGFLTMFNRVL----AEIQPTHIAVA 57 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFRNE+Y +YKANR PE L Q L+R A I +E+QG+EADDII T Sbjct: 58 FDKDRSTFRNELYSEYKANRSAPPEELGGQFQLLRDVLAALNIEYLEMQGYEADDIIGTL 117 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 + AE++G I++ D D +QLVS + T K E D + V KWG+ PEKMV Sbjct: 118 SKKAEEQGLKTVILTGDGDALQLVSEQVEVLLTKKGISEMELYDPQGVKDKWGVEPEKMV 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++ L GD+ DNIPG+PG+G KTA L+QE+ +LEN+ N ++K KK E + + E A Sbjct: 178 EIKGLMGDASDNIPGVPGVGPKTAMKLVQEFTSLENLYENLPQVKGKKLVEKLEQNREQA 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 LSR+L + D+ + +E ++ + + P L+ ++LEF + Sbjct: 238 FLSRQLATINRDMELDFSIEDYVMREPHYPELLELYRSLEFNNFL 282 >gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 877 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 205/502 (40%), Positives = 316/502 (62%), Gaps = 23/502 (4%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEIL--KSRKSSIPIDKIS 534 GI +RG D++L +Y+L+ + + DIA++A+ ++ + E + K K S+P Sbjct: 386 GIDVRGVAFDLLLAAYLLNPAQDAGDIAAVAKMKQYEAVRSDEAVYGKGVKRSLP----D 441 Query: 535 DSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 + + EH + + I W L +P L + + +L++P+ ++++ME TG+ +D Sbjct: 442 EQTLAEHLVRKAAAI---WALEQPFMDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVD 498 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 L+Q+ +E+++ L ++E+ IY+ +G++FN++SPKQLG ILF KL+ P KTKTG + Sbjct: 499 TKRLEQMGSELAEQLRAIEQRIYEHAGQEFNINSPKQLGVILFEKLQLPVLKKTKTG-YS 557 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T+A LE++ + I++NIL +RQL K++STY + L + T +VHT ++ T TG Sbjct: 558 TSADVLEKL-APHHEIVENILHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFNQTLTQTG 616 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S EPNLQNIPI+ + G+KIR+AF+ S P + +ADYSQIELR+LAHIA L + Sbjct: 617 RLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEA 676 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F+ LDIH A +IF V+ E+V+ MRR AK +NF I+YGIS + LA L I R EAA+ Sbjct: 677 FQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAE 736 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I+RYF FPG+ Y+E +Q GYV T+ RR + +I S ++R+ ER A+N Sbjct: 737 FIERYFASFPGVRRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNT 796 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI ++AMI + L++ +L ++LLQ+HDEL+ E P+EEI +++ ME+ Sbjct: 797 PIQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQ 856 Query: 951 ACLPKINLRVPLKVNIKVSNNW 972 A VPLKV+ W Sbjct: 857 AVSS-----VPLKVDYHYGPTW 873 Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 117/295 (39%), Positives = 173/295 (58%), Gaps = 11/295 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M+ + L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L E +H Sbjct: 1 MRLKKKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEQPTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R + P L Q PL+R + + IPA E+ +EADDI Sbjct: 56 LLVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLKTYRIPAYELYIYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 I T AE+EGF V IIS D+DL QL S + D K+ DIE V +K+G+ Sbjct: 116 IGTLAARAEQEGFEVKIISGDRDLTQLASRHVTV-DITKKGITDIEPYTPETVREKYGLT 174 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PE++V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + +K +K +E + + Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEVKGEKVKEKLRQ 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 + + A LS++L + D P+ + L+ L+ E + ++I+ K L F + ++A Sbjct: 235 HRDLALLSKQLASICRDAPVELSLDALVYEGQDREKVIALFKELGFQSFLEKMAA 289 >gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2] gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2] Length = 877 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 218/569 (38%), Positives = 339/569 (59%), Gaps = 24/569 (4%) Query: 418 DDTSFKVETI-----FIDLSVHTSQDSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNI 469 D+ +F VE + + D+ + + G +KE K + E+E K ++ Sbjct: 315 DENAFYVELLEDNYHYADIIGFSVANDKGNFFFSKETALKSDVFKTWAEDETKKKTVYDA 374 Query: 470 KYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSR 524 K ++ L +G+ ++G + D+ + SY+++ ++ D+ASIA+ + + E K Sbjct: 375 KRSEVSLRHHGVHLKGADFDLYIASYLINPSQTIEDMASIAKNHGYNAIQSDEAFYGKGA 434 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 K IP +K ++ H + ++ L L +L + ++ L+ P+ +++ ME Sbjct: 435 KRRIPEEK----ELAGHLARKAAALMTLKEKLDSELKENQQSELFYDLEMPLSLILADME 490 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 TGI++D + LK + ++ L +E+ I++L+GE FN++SPKQLG ILF KL P+ K Sbjct: 491 STGIKVDLERLKTMGQDLLSKLDEIEKRIHELAGEAFNINSPKQLGVILFEKLGLPAIKK 550 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TKTG + T+A LE++ + II++IL +RQL K++STY + L +N T +VHT ++ Sbjct: 551 TKTG-YSTSADVLEKLENS-HEIIRDILHYRQLGKLQSTYIEGLLKVVNYETGKVHTRFN 608 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAK 763 A T TGRL+S +PNLQNIPI+ + G+KIR+AF+ S P + +ADYSQIELR+LAHIA Sbjct: 609 QALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEPGWAIFAADYSQIELRVLAHIAN 668 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L + F +DIH A E+F VN +V+ MRRHAK +NF I+YGIS + L+ L I Sbjct: 669 DEKLIEAFIEDMDIHTKTAMEVFHVNANEVTSNMRRHAKAVNFGIVYGISDYGLSQSLGI 728 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 R EA +I RY +PG+ +Y++ + +Q GYV T+ RR + EI S ++R+ Sbjct: 729 TRKEAGKFIDRYLESYPGVKQYMDDIIHDAKQKGYVSTLLHRRRYLPEITSRNFNLRSFA 788 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER A+N PIQGSAADI ++AMI + L +L ++LLQ+HDEL+FEVPE+EI T +I Sbjct: 789 ERTAMNTPIQGSAADIIKKAMIDMADRLRKEELKARLLLQVHDELIFEVPEDEIETLKKI 848 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + ME A + L+VPLKV+ W Sbjct: 849 VPDVMENA----VELKVPLKVDYSFGPTW 873 Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 110/301 (36%), Positives = 175/301 (58%), Gaps = 11/301 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S YRAF+A PLL+ G+ NA+ GF ML ++L++ + +H V FD Sbjct: 6 LVLIDGNSIAYRAFFALPLLNNDK-GIHTNAVYGFTMMLQRILEDEK----PTHLLVAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ + +YK R K P L Q P +R A+GI E++ +EADDII T + Sbjct: 61 AGKTTFRHKTFSEYKGGRQKTPPELSEQFPYIRELLDAYGISRYELENYEADDIIGTLSL 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181 AEK+G+ V +IS DKDL QL S + T K DIE H+ +K+GI ++++ Sbjct: 121 HAEKDGYEVKVISGDKDLTQLSSDAVTVSITRKG-ITDIEEYTPAHIEEKYGITADRIID 179 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GDS DNIPG+PG+G KTA LL+E+G LE +L + ++ KK +E + E+ + A Sbjct: 180 MKGLMGDSSDNIPGVPGVGEKTALKLLKEFGTLEELLDSVDKVSGKKLKEKLEEFRDQAL 239 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 +S++L + + P+ I +E + E + ++I+ K L F L+ ++ + +E Sbjct: 240 MSKELATITREAPVEIKIEDIEYEGFDKEKVINIFKELGFNSLLEKLGGDTEAVEEKLEE 299 Query: 302 V 302 + Sbjct: 300 I 300 >gi|42519528|ref|NP_965458.1| DNA polymerase I [Lactobacillus johnsonii NCC 533] gi|41583817|gb|AAS09424.1| DNA polymerase I [Lactobacillus johnsonii NCC 533] Length = 886 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 214/528 (40%), Positives = 331/528 (62%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L++ E++ K +IK + LHR I G + D++L SY++++ +S+D+ IA Sbjct: 367 LRQMLEDKTIKKNVFDIKRTYVGLHRLDIKAEGLDYDMLLASYLVNNENNSNDLGEIAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K +K ++P D+ EH VI +L L KL + Sbjct: 427 YDDYSVKTDLEVYGKGKKQAVP----DDNDFFEHLAAKVAVIEKLKTPLLEKLKDHEQDD 482 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +YE ++ P+ V+++MEITGI+++ +L Q+ + + L LE IY +GE+FNL+SPK Sbjct: 483 LYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPK 542 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + LEQ+ +PI+ IL++RQ++KI++TY Sbjct: 543 QLGHILFEKLGLPPIKKTKTG-YSTSVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKG 600 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745 L + I + R+HT Y T TGRL+S++PNLQNIP KT+ G++IR+AF+ P TK + Sbjct: 601 LLDCI-QPDGRIHTRYLQTLTTTGRLSSVDPNLQNIPTKTEEGKQIRKAFV-PSTKDGYI 658 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804 S DYSQ+ELR+LAH++ + + F++ DIH A +IF ++ ++V+P MRRHAK + Sbjct: 659 FSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R +A +I+ YF ++P I Y+++ R+NGY ETI Sbjct: 719 NFGIVYGISDYGLSKNLGISRKQAKTFIENYFEQYPQIKNYMDEAIKKARENGYAETIMH 778 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I+S ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TKM+LQ+ Sbjct: 779 RRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQV 838 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 839 HDELIFDVPKDELDTIKKIVPEVMQSA----VKLDVPLIADSNWGHNW 882 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 106/290 (36%), Positives = 163/290 (56%), Gaps = 19/290 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK------HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L R+ DGL NAI F NML ++ K++ ++ Sbjct: 6 LLLIDGNSVAFRAFYA---LYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTNPTN 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD VTFR E+Y DYK R K P L QLP++R + GI + E++ +EADDI Sbjct: 59 VLVAFDAGKVTFRTEMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 I T + + E G+ V I++ D+DL QL S T + T K D E H+ + G+ Sbjct: 119 IGTLSKMGEDAGYTVDIVTGDRDLTQLASDKTTVLIT-KNGVGDTEAYTPAHMKEVNGVT 177 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P + + ++AL GDS DN PG+ +G KTA+ L+Q+YG++E + + +K+ K +EN++ Sbjct: 178 PTEFIDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSIEELYEHVDEMKKSKLKENLIN 237 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 + A L++KL + D P+ + L L++ N L + + L F K + Sbjct: 238 DKDKAFLAKKLATIDRDSPVEVTLADTKLQEPNIEDLRNLYERLGFKKFL 287 >gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii] gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii] Length = 881 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 205/517 (39%), Positives = 309/517 (59%), Gaps = 13/517 (2%) Query: 463 LKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT----- 516 LK ++K L LHR GI M G + D M+ Y+L+ R +H + +IA LSY Sbjct: 368 LKAVQDLKPLLLALHRQGIDMPGPYFDTMVADYLLNPNRRAHTLEAIAMDLLSYQLGAGE 427 Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 R++ K +S +D+ + E A V ++ +LR +L + L +++ ++ P+ Sbjct: 428 REDTSKGPQSLFDVDEALVRRTGEAAA----VTAKVAPMLRERLKEQGSLSLFQDVEMPL 483 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 + V++++E G +D L+ +S E+ L + +IY L G +FN+ SPKQL +LF Sbjct: 484 VPVLAEIERNGFLLDVAGLQALSKELEHELEQMVGSIYRLGGGEFNIGSPKQLATVLFET 543 Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 L KTKTG + T L Q+ + + IL +R L+K+KSTY D+LP +N T Sbjct: 544 LGLKPLRKTKTG-YSTDEDTLTQL-ASQHELPAQILNYRTLTKLKSTYVDALPQLVNPET 601 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 +R+HT + TGRL+S +PNLQNIP+K D G +IR AFI+PP +L+ ADYSQ+E R Sbjct: 602 KRLHTSLNQTVAATGRLSSTDPNLQNIPVKGDYGLRIREAFIAPPGHQLLCADYSQVEPR 661 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 ILAH+++ L QVFE DIH A EIF + +V+ MRR AK++ F I+YGISPF Sbjct: 662 ILAHLSQDPRLLQVFEKGEDIHMATAMEIFNLPAGEVTRDMRRAAKSVVFGIVYGISPFG 721 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 LA+ + +P+++A YI+ +F +F + +++ + + GY TI GRR E+ Sbjct: 722 LASNIGVPQADAKKYIETFFEKFAAVRALMDRNIDDGKTKGYTTTILGRRRPIPELQGGD 781 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 S R + ER A+N+PIQGSAAD+ + AMI VH+ L++ KM+LQ+HDEL+FEVPE+E Sbjct: 782 PSQRGVGERMAVNSPIQGSAADLIKVAMIKVHQRLQNELPRCKMILQVHDELIFEVPEQE 841 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 + A Q++ ME A + L VPLKV++ V NW+ Sbjct: 842 LEQAKQLVKAEME-ATGAALGLSVPLKVDLGVGLNWR 877 Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 106/278 (38%), Positives = 165/278 (59%), Gaps = 5/278 (1%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+DGS++IYRAF+A P LS GL NA+ GF ML K+L++ R + + AV+FD Sbjct: 4 LYLIDGSAYIYRAFFALPPLSNSK-GLQTNAVYGFTTMLLKVLRDHRPD----YVAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 T R+E + DYKA RP +P+ + Q+P + +A +P I G+EADD+I T Sbjct: 59 EKGPTHRHEAFKDYKAQRPPMPQGMSAQIPYIHRVVEALSLPVIRQAGYEADDLIGTLAR 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 E EG V I+++DKD+ QL++P T +YD VK++ ++G+ P ++V + L Sbjct: 119 KGEVEGLEVVIVTSDKDMFQLLTPKTRIYDPVKDKWFGEADSQGRFGVEPARVVEIMGLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPG+ GIG KTA L+ ++G +E +L + K ++ +LE E AR+S++L Sbjct: 179 GDTSDNIPGVKGIGEKTAVKLITQFGTIEELLSRIEEVTPAKTKKLLLEQGEQARMSKQL 238 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 ++ D P+ +H + L+S L+ LEF L Sbjct: 239 ATIQLDCPLEFVPDHFQAKAPQTETLVSLLRELEFMTL 276 >gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10] gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10] Length = 878 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/490 (40%), Positives = 302/490 (61%), Gaps = 15/490 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543 DI + SY++D SH+IA IA + + E + K +K +IP ++ +H Sbjct: 395 DIQMASYLIDPASGSHEIADIANRKNGIQVQTDEAVYGKGKKQAIP----EAEELSQHLG 450 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 + IL L L +L + +++ L+ P+ ++ +ME G+ +DQ L+ + +++ Sbjct: 451 RKAAAILDLKKNLEQELRDNRQWELFQDLEMPLSVILGRMEANGVSVDQQELETIGKDLT 510 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L LE+ IY+ +G+ FN++SPKQLG +LF L P KTKTG + T+A LE++ G Sbjct: 511 ERLAKLEQQIYEAAGQSFNINSPKQLGKVLFEDLGLPVLKKTKTG-YSTSADVLEKLK-G 568 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 ++ +I +IL +RQL K+ STY + L I+ +T ++HT ++ A T TGRL+S EPNLQNI Sbjct: 569 EHDVIDHILFYRQLGKLNSTYIEGLLKVIHPKTGKIHTIFNQAVTQTGRLSSTEPNLQNI 628 Query: 724 PIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 P++ + G+KIRRAF+ S P KL +ADYSQIELR+LAHI+K L F+ +DIH A Sbjct: 629 PVRLEEGRKIRRAFVPSKPGSKLFAADYSQIELRVLAHISKDENLISAFQEGMDIHTKTA 688 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +++FGV +V+ +MRR AK +NF I+YGIS + L+ L I R +A +I +YF +PG+ Sbjct: 689 SDVFGVKGNEVTAEMRRTAKAVNFGIVYGISDYGLSQNLGISRKKAQTFIDKYFESYPGV 748 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+E R+ GYV T+ RR + ++ S + R+ ER A+N PIQGSAADI ++ Sbjct: 749 KTYMEDIVAEAREQGYVTTMLQRRRYLPDLTSRNFNQRSFAERTAMNTPIQGSAADIIKK 808 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AM+ + LE L + MLLQ+HDEL+FEVPE+EI T +++ ME I L VPL Sbjct: 809 AMVDMATELERQNLKSVMLLQVHDELIFEVPEDEIETMEKLVKDVMEST----IELNVPL 864 Query: 963 KVNIKVSNNW 972 ++ + W Sbjct: 865 ITDMATGDTW 874 Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 109/290 (37%), Positives = 171/290 (58%), Gaps = 10/290 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S YRAF+A PLL+ G+ NA+ GF ML K+L+ + +H V Sbjct: 2 NKLVLIDGNSIAYRAFFALPLLNTDK-GVYTNAVYGFTTMLLKVLEEQK----PTHLMVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E + +YK R K P L QLP++R +AF I +E+ +EADDII T Sbjct: 57 FDAGKSTFRHETFKEYKGKREKTPPELAEQLPVMRDLLKAFNIDHVELTNYEADDIIGTL 116 Query: 125 -TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 T + KE + V I + DKDL+QLV+ T ++ T K + ++ + +++G+ PE++ Sbjct: 117 ATQVKGKEDWDVHIYTGDKDLLQLVNGQTTVHLTKKGITNVDTYQVKDIDERYGLKPEQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GDS DNIPG+PG+G KTA LL+E+G++E + + + KK +E + E Sbjct: 177 IDMKGLMGDSSDNIPGVPGVGEKTALKLLKEHGSVEEVYQHLDEVSGKKLKEKLEANEEQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A +S++L + +VP+ I + L + + L S K LEF L++R+ Sbjct: 237 ALMSKQLATIFLEVPLEIKPDDLKRGEPDQAALSSLFKELEFQSLLSRIG 286 >gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae bacterium] Length = 894 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 202/513 (39%), Positives = 317/513 (61%), Gaps = 11/513 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KE 519 K+G NIKYD +VL G+++ G D ML SY+L+ H++ +A+ +L YT KE Sbjct: 385 KVGQNIKYDLIVLKSEGVNLVGVAFDTMLASYILNPSGRRHNMNDMARDYLGYTTTKYKE 444 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 ++ + I DK+ E+A E++++ +L+ L P L+ + + L+ P+I+V Sbjct: 445 VVGTASKEIGFDKVDIELATEYAAEDADITWRLYENLSP-LLQGDDFKLLQELELPLIEV 503 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 +++ME+ G+++D+ L+++S I + L ++ IY L+GE+FN++SPKQL ILF KL+ Sbjct: 504 LAEMELHGMKLDKSHLQKLSQLIQQKLEDQQKEIYSLAGEEFNINSPKQLSVILFEKLEL 563 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 P KTK G + T LEQ+ ++ + +L +RQL K+KSTYAD+L I T RV Sbjct: 564 PVIKKTKNG-YSTDVSVLEQL-AAEHELPDVVLTYRQLVKLKSTYADALQEDIFNNTGRV 621 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 HT ++ TGRL+S PNLQNIPI+T++G++IR+AF++ L+SADYSQ+ELR+LA Sbjct: 622 HTSFNQTVAATGRLSSSNPNLQNIPIRTEMGREIRKAFVAEGNNHLLSADYSQVELRVLA 681 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+++ L F+ DIH A EIFG E++ + RR AK +NF I+YG+S F L+ Sbjct: 682 HLSEDEALVDAFQMGEDIHTRTACEIFGTTPERLDAEARRMAKAVNFGIVYGLSAFGLSK 741 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL+I +A +I +YF + + Y+ +T ++ GY T+ RR + ++ S + Sbjct: 742 QLKIYPKDAKKFIDQYFALYKKVKVYMVETVAQAKEVGYTLTLMNRRRYLPDLKSQNRQV 801 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+P+QGSAAD+ + AMI + + + KL ++M+LQ+HDELVFE PE+E Sbjct: 802 RESAERIAINSPVQGSAADLIKLAMIRLAEQIRTKKLKSRMILQVHDELVFECPEDEEQE 861 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ ME+ +P L+VPL V+I NW Sbjct: 862 MRALVTKEMEE-VMP---LKVPLIVDIGWGENW 890 Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 117/347 (33%), Positives = 192/347 (55%), Gaps = 13/347 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M K L+L+DGSS+I+RAF+ G P NA+ GF +ML K++++ + + + Sbjct: 1 MSKAKTLYLIDGSSYIFRAFFGIRQFLSTSTGFPTNALYGFIHMLQKVVKDEKPD----Y 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV FD TFR+++Y DYKANR PE L Q P +A+ I + + GFEADDI Sbjct: 57 LAVAFDSKEKTFRHKMYEDYKANRDAPPEDLAKQFPHFEPLVKAYNIHGVRVPGFEADDI 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T A +EGF V I+S DKD+MQL+ P + DT+K + +E V +K+G+ P+K++ Sbjct: 117 IGTLAKKAAEEGFKVVIVSGDKDMMQLIGPDIRMLDTMKNKWFGVEEVQEKFGVTPDKVI 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + L GDS D+IPG+ G+G KTA+ L++++ ++ + + + K ++ +L+ E A Sbjct: 177 DVMGLMGDSSDHIPGVKGVGPKTASELIRKFSSMHELYERIDEVDKAKLKDKLLQDKEMA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 LSR+LV + T + + LE + + + L EF+ L+ + DA Sbjct: 237 LLSRELVTINTTMELPDGLEDMKFKTPDNSELRKLFSEFEFSSLLAELGD----DAGVSS 292 Query: 301 PVVLDINTTENKGIAIETEIDR-DTTIKTSQFSSLSDQTSKINSEQT 346 P + + + I IE +++R +K S+ +L +T+ +N Q Sbjct: 293 PAI----ESHYETILIEADLERWIEQLKKSEIFALDLETTSLNPVQA 335 >gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42] gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42] Length = 879 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 212/544 (38%), Positives = 327/544 (60%), Gaps = 19/544 (3%) Query: 438 DSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMS 493 + TG + KEI K + E+E K + K + L GI ++G E D +L + Sbjct: 342 NETGLYYIPKEIAIQSETFKSWAEDESMKKWVFDSKRSVVALRWQGIELKGTEFDALLAA 401 Query: 494 YVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549 Y+++ G S D+AS+A+++ +S K K ++P +K ++ +H ++ + Sbjct: 402 YIINPGNSYDDVASVAKEYGLNIVSKDEAVYGKGAKRAVPAEK----ELADHLARKASAV 457 Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609 L L L L +YE L+ P+ ++ +ME G+++D + LK++ E+ L Sbjct: 458 NSLRDKLLHALEENNQLELYEDLELPLALILGEMESMGVKVDVERLKRMGEELKAKLKEY 517 Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669 EE I+D++GE FN++SPKQLG ILF KL P KTKTG + T+A LE++ + I+ Sbjct: 518 EEKIHDIAGEPFNINSPKQLGVILFEKLGLPPVKKTKTG-YSTSADVLEKL-ADKHDIVA 575 Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729 +IL++RQ+ K++STY + L K + +VHT ++ A T TGRL+S +PNLQNIPI+ + Sbjct: 576 HILQYRQIGKLQSTYIEGLLKVTRKDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEE 635 Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 G+KIR+AF+ S P + +ADYSQIELR+LAHI+K L + F N +DIH A ++F V Sbjct: 636 GRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHV 695 Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848 + ++V+ MRR AK +NF I+YGIS + L+ L I R EA +I RY FPG+ Y+E+ Sbjct: 696 SEDEVTQAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLESFPGVKAYMEE 755 Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908 + +Q GYV T+ RR + E+ S ++R+ ER A+N PIQGSAADI ++AMI + Sbjct: 756 SVQEAKQKGYVTTLMQRRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMA 815 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 L++ L ++LLQ+HDEL+FE P+EEI +++ ME A + L VPLK + Sbjct: 816 AELKEKNLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA----LALDVPLKADYAS 871 Query: 969 SNNW 972 +W Sbjct: 872 GPSW 875 Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 112/293 (38%), Positives = 170/293 (58%), Gaps = 9/293 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDG+S YRAF+A PLLS + G+ NA+ GF +L K+L++ + +H Sbjct: 1 MTERKKLVLVDGNSLAYRAFFALPLLSNEK-GIHTNAVYGFAMILMKMLEDEK----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+ + +YK R K P L Q+P +R A+ I E+ +EADDI Sbjct: 56 MLVAFDAGKTTFRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYKISRYELPEYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T AEKEGF V ++S DKDL QL + T + T K E EHV +K+G+ P Sbjct: 116 IGTLAVSAEKEGFEVKVVSGDKDLTQLATGKTTVAITRKGITDVEDYTPEHVQEKYGLTP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ ++ L GDS DNIPG+PG+G KTA LL+++ ++E +L + + KK +E + EY Sbjct: 176 LQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFHSVEKLLDSIDEVSGKKLKEKLEEY 235 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 E A +S++L + T+ PI + E L + + ++++ K L F L+ R+ Sbjct: 236 KEQALMSKELATIMTNAPIEVKPEDLDYKGFDREQVVAIFKDLGFNTLLERLG 288 >gi|94971505|ref|YP_593553.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345] gi|94553555|gb|ABF43479.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345] Length = 929 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 181/410 (44%), Positives = 271/410 (66%), Gaps = 3/410 (0%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L+ VYE +D+P++ V+ ME G+++D D+L ++S + ++ +L IY LSG++FN++ Sbjct: 521 LMKVYEDIDRPLVTVLYAMEAAGVKLDCDVLAEMSTRLQRDADALARKIYGLSGQEFNIN 580 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLGD+LF KL P K G+ +TA D+ + G++ + K +LE+RQ +K+KSTY Sbjct: 581 SPKQLGDVLFNKLNLPKPVKYGKGKTISTAVDVLEGLAGEHEVPKLVLEYRQFTKLKSTY 640 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 D+LPN + T R+HT ++ A+T TGRL+S+ PNLQNIPI+T+LG++IR AF++ Sbjct: 641 VDALPNLCHAGTGRLHTTFAQAATSTGRLSSVNPNLQNIPIRTELGREIRAAFVAEKGNV 700 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L++ADYSQIELR+LAH ++ L + N DIH + A+E+FGV + + RR AK + Sbjct: 701 LLAADYSQIELRLLAHFSQDRLLVDAYNNDRDIHALTASEVFGVPPMMIDAEHRRRAKAV 760 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGISPF L+ QL I E+ YI+ YF R+ G+ E++ VR++ V T+FG Sbjct: 761 NFGIVYGISPFGLSQQLGIDTKESKRYIESYFERYSGVREWLNSVLEQVRKDEKVSTLFG 820 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 R +I+S ++R ER A N P+QG+AAD+ + AMI +H+ L + KL T+MLLQ+ Sbjct: 821 RIRPIPDIHSRNPNLRGFAERTATNTPLQGTAADLIKLAMIRIHRDLIERKLKTRMLLQV 880 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDELVFEVP+ E+ ++ ME L VPLKV++ V NW++ Sbjct: 881 HDELVFEVPQAEVEEVRALVQDRMENV---HPELTVPLKVDVGVGKNWRD 927 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 117/346 (33%), Positives = 186/346 (53%), Gaps = 33/346 (9%) Query: 2 QKENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 +K +FL+D F++RA++A P+ ++ G+P +A F NML KL Q+ E I Sbjct: 30 KKLGRVFLIDTFGFVFRAYHAMARQRPMSTKT--GIPTSATYVFVNMLNKLRQDFAPEHI 87 Query: 58 AS--------------HFAVI--FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLA 101 A+ A I FD TF+ Y YKANR ++PE L Q+P + A Sbjct: 88 AAIMEGGKTFRDEEAAAVATINKFDIKTQTFQEIAYGGYKANRTEMPEDLTQQMPYIERA 147 Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161 A+ IP I +GFEADD+I T A G+ V I+S+DKD+MQLV+ C+ + K+ Sbjct: 148 LNAYRIPMISAEGFEADDVIGTLAKKAADGGYPVYIVSSDKDMMQLVTERVCILNPPKDN 207 Query: 162 KI-DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220 I D + V + G+PPE++V + AL GDSIDN+PG PGIG K + L+Q +G +E L + Sbjct: 208 LICDPKKVEEILGVPPERVVDVMALRGDSIDNVPGAPGIGDKGSVQLIQRFGTVEAALDH 267 Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280 A ++ K++RE++ + + S+++V +RTD+ + + + +D + + LE Sbjct: 268 AGEVESKRQRESLQQNRDAVLFSKRMVTIRTDIDMPFEPQAMRAQDPDYEACKALFAELE 327 Query: 281 FTKLINR-------VATTYDCDAAN---IEPVVLDINTTENKGIAI 316 F L+ + V T DA + I+ ++ D+N +AI Sbjct: 328 FNNLLKQFLTEGSEVGETDYADAKSTDEIKALLRDVNADHPLAVAI 373 >gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6] Length = 857 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 206/540 (38%), Positives = 325/540 (60%), Gaps = 13/540 (2%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLD-SGR 500 L + L+ L+ + E+ LK+ H+ K +++L RYG+S+ G D L S+++D +G Sbjct: 325 GGLGEGALALLRGWLEDSARLKVVHDSKRLRVLLARYGVSLSGVVADPRLESFLVDPTGL 384 Query: 501 SSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 H I + + +L T K +L S K + +++ S A + ++V++ +W +R Sbjct: 385 VPHRIDQLVKAFLQRTVPPAKSVLGSGKKARRFAELAASVTGAWACQRADVVVTMWPQIR 444 Query: 558 PKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +L V++L H+ E +D P+ +V++ ME+ G++++ L+++SAE LL LE I+ Sbjct: 445 ERLEEVDQLPHLQE-VDLPLSEVLATMELAGVRVEPTELEEMSAEFRATLLQLEAEIWRQ 503 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +G +FN++SPKQLG +LF +L P +TKTG + T A+ LE++ ++PI +L+ R+ Sbjct: 504 AGREFNVASPKQLGVVLFEELNLPVIKRTKTG-YSTAAEVLERLTR-EHPIAGLLLQHRK 561 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 L+K+ +TY + L IN T RVH + TGRL S P++Q P++T G++IRRA Sbjct: 562 LAKLLTTYTEVLRAAINPVTGRVHPTFQQTYAATGRLISTNPDIQKTPVRTPEGKRIRRA 621 Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 FI P ++ISAD+SQIELR+LAH + L + F D+HR AAE+FG E V+ Sbjct: 622 FIPAPGWRIISADWSQIELRLLAHFSSDPNLLEAFAQDEDVHRRTAAELFGCVPEAVTDA 681 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 R AKT+NF+ IYG L +L + R+EA YI RYF + G+ E++++T + Sbjct: 682 QRSVAKTVNFATIYGQGATALGQRLGLKRTEAKGYISRYFQAYAGVREWLDRTIEGALAS 741 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GYVET+ GRR E++S + +R + R A N PIQGSAAD+ + M+++ K + L Sbjct: 742 GYVETLLGRRRVIPELSSNSAMVRQVGMRMAANTPIQGSAADLCKLVMLTLAKRFQTRGL 801 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 T+MLLQIHDELVFE +E+ + Q+I +ME +LRVPL+V+I V NW E + Sbjct: 802 QTRMLLQIHDELVFEAAPDEVDASCQLIREAMESVG----DLRVPLRVHIGVGANWAEAH 857 Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 97/251 (38%), Positives = 137/251 (54%), Gaps = 5/251 (1%) Query: 36 NAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQL 95 NAI GF M K+ E AV+FD P TFR E+Y YKA RP +P L QL Sbjct: 4 NAIFGFAVMFRKMFAGKTPE----LGAVVFDAPGPTFRQELYEAYKAQRPPMPTDLREQL 59 Query: 96 PLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY 155 P + A P + + G+EADD+I T T A + G V I++ DKD QL+ P + Sbjct: 60 PWIDRLVTAHQFPILRVPGYEADDVIGTLTRQALEAGHEVMIVAGDKDFAQLIGPRVRMV 119 Query: 156 DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLE 215 DT+++ D E V KKWG+ PE+++ AL GD +DN+PG+PGIG K A LL+ YG+L Sbjct: 120 DTLRDVTYDAELVRKKWGVRPEQIIDYLALVGDKVDNVPGVPGIGAKGAVALLERYGDLA 179 Query: 216 NILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275 IL N +K ++ + + + E A+L R+LV + T VP+ L L + +L Sbjct: 180 GILANLDDLKGRQ-EQTLRDNRELAQLCRELVTIDTAVPLAQELASLRVRVPETSKLNEL 238 Query: 276 LKALEFTKLIN 286 L+F L+ Sbjct: 239 YMELQFYSLLT 249 >gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira interrogans serovar Lai str. 56601] gi|24197598|gb|AAN50823.1|AE011518_2 DNA polymerase I [Leptospira interrogans serovar Lai str. 56601] Length = 917 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 197/516 (38%), Positives = 321/516 (62%), Gaps = 11/516 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519 K+G NIKYD +VL +G + + D ML SYVL H++ +A+++L+Y T ++ Sbjct: 406 KVGQNIKYDLIVLENHGFVLNNIQFDTMLASYVLRPEGRRHNMDDLAKEFLNYNTITYED 465 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 ++ + K + I QV E+A E+++V +L+ + R + + + ++ P+I V Sbjct: 466 LVGTGKKKKELTDIDPEQVAEYAAEDADVTFRLYQIFRKSIKDSGVEPILREMEMPLISV 525 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 +++ME TGI +D ++++ + + + LE I+ +G FN++S K+L ILF LK Sbjct: 526 LAKMEKTGIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQKILFDNLKL 585 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 KT+TG + T + LE++ G++PII+ +L++R+ +K+KSTY D+LP +N +T R+ Sbjct: 586 RIVKKTQTG-FSTDHEVLEEL-VGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRI 643 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRIL 758 HT Y+ TGRL+S +PNLQNIPI+ G+ +R+ F + +++S DYSQIELRI+ Sbjct: 644 HTSYNQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSNDYEILSLDYSQIELRIM 703 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AHI+K + + + + LDIH+ AA ++GV V+ +MR AK +NFS+IYG++P+ L+ Sbjct: 704 AHISKDPAMLEAYNHGLDIHKRTAAALYGVPETDVTHEMRDKAKVVNFSVIYGVTPYGLS 763 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 LRIPR EA +I+RY ++PG+ Y++ F +NGYV+T+ GRR +INS S Sbjct: 764 RNLRIPRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPVTDINSTHKS 823 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 + +R AIN+PIQG++AD+ + AMI +H+ +E ++MLLQ+HDELVFEV ++E Sbjct: 824 AKEAAKRIAINSPIQGTSADMIKIAMIKIHEDIEKKHYKSRMLLQVHDELVFEVHKKEKD 883 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME A ++L +P+ V K NW E Sbjct: 884 DFKASMKKHMETA----MSLDLPIVVEGKFGVNWDE 915 Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 148/292 (50%), Gaps = 11/292 (3%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L ++DG +F++RA+YA L+ G P A GF ML+KL+Q+ SH A+ Sbjct: 4 LLIIDGHAFVFRAYYAFGASNLTNSKTGKPSGATFGFFKMLFKLIQDY----TPSHIAMT 59 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD R +I+ DYKANR +PE L PQ+ V + G ++++G EADD+I T Sbjct: 60 FDPGGTLERGKIFQDYKANRKPMPEDLRPQIQEVMDTLEKIGFKILKVEGQEADDVIGTL 119 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPEKM 179 + I S DKDL QL+ K+ +ID V ++ G+ +++ Sbjct: 120 CETYRSTAKEILIFSGDKDLYQLLEKKNIKMLRGKKGVTEFVEIDSAWVKEELGVDVKQI 179 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + GD+ DNIPG+ GIG K A+ LLQEY +L+ + N +IK + + E E Sbjct: 180 PDYMGIVGDTSDNIPGVKGIGDKGASKLLQEYKSLDGVYKNLEKIKNPGLKTKLSEQKEN 239 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 A LS++L +R D+ + I + + + D I + K+ + L +A + Sbjct: 240 AYLSKQLATIRRDLQLGITEKDIEIPDYKSDAAILYFKSQGYNVLSKDLAKS 291 >gi|302191203|ref|ZP_07267457.1| DNA polymerase I [Lactobacillus iners AB-1] Length = 883 Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/532 (39%), Positives = 329/532 (61%), Gaps = 24/532 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 LKK E+++ K ++K + + L R GI++ +DIML SY+ DS ++ D+ +A Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANS 423 Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + + EI+ ++ S+ +D + H +V+ +L + P+L + L Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 H+Y+ ++ P+ ++++MEI GI++ L ++ ++ + L+ IY L+GEKFN++SP Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KLK KTKTG + T+ LE++ +PI+ +IL++RQ+SKI+STY + Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L ++I + ++HT + T TGRL+S+EPNLQNIP+K + G++IR+AF+ P K+ Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802 L S DYSQ+ELR+LAH++ + + F+ DIH A +IFG+ N+++V+P MRRHAK Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF I+YGIS + LA L I R EA ++I YF ++P I +Y++ R+ GY ETI Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 RR +I++ +IR+ ER AIN+PIQGSAADI + AMI + LE KL TKM+L Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+F+VP EE+ ++ M++A L VPL + +NW E Sbjct: 834 QIHDELLFDVPSEELDLIRTLVPEIMQQAA----QLDVPLIADANWGHNWYE 881 Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L ++ D GL NAI F NML LL+N + +H Sbjct: 4 LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD +TFRN++Y DYK R K P L QLP+++ GI + E+ +EADDI Sbjct: 57 MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 + T + GF VTI++ D+DL QL + T K+ D+E H+ + +G+ Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++AL GD+ DN PG+ +G KTA+ L+ +YG++EN+ +IK K +E ++ Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A L +KL + P+ + ++ + L+ +L SF + L F K ++ + + D Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295 >gi|238917003|ref|YP_002930520.1| DNA polymerase I [Eubacterium eligens ATCC 27750] gi|238872363|gb|ACR72073.1| DNA polymerase I [Eubacterium eligens ATCC 27750] Length = 894 Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/497 (39%), Positives = 317/497 (63%), Gaps = 11/497 (2%) Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQ 537 +S + F D + +Y+L S+D S+ +++LS T + E+L + +++ D+ Sbjct: 404 VSEKAFIDTAIAAYLLHPSNESYDYESLGREFLSLTYPSKTELLGKLSINKAVNEAEDNL 463 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ +A +S + + +L E + ++E ++ P+I V+ +M+ GI +D+ L Sbjct: 464 IK-YACLSSYAYYKCADKITEQLKSENMYELFETIEMPLIFVLFEMQQQGISVDKQALVD 522 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 S + + LE+ IY+ +GE+FN++SPKQLG ILF +L P+G KTK+G + T A L Sbjct: 523 YSKVLGTKISVLEKEIYEAAGEEFNINSPKQLGVILFERLGMPNGKKTKSG-YSTAADVL 581 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E++ D P++ ILE+RQL+K+KSTYAD L +I++ R+H ++ T TGR++S E Sbjct: 582 EKL-APDYPVVSKILEYRQLAKLKSTYADGLTQYISE-DGRIHGTFNQTITATGRISSTE 639 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+ ++G+ IR+ F+ + ADYSQIELRILAH++ L + + +S DI Sbjct: 640 PNLQNIPIRMEMGKAIRKVFVPKDGFVFLDADYSQIELRILAHMSGDEKLIEAYNSSADI 699 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 HR AA++FGV +E+V+ + RR+AK +NF IIYG+S F L+ L I R EA +YI+RYF Sbjct: 700 HRATAAQVFGVPLEEVTDEQRRNAKAVNFGIIYGMSSFGLSQDLSISRKEAKEYIERYFA 759 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 +P I +I+ + ++ GY T++ RR EI S R+ ER A+NAPIQG+AA Sbjct: 760 SYPTIKTFIDGLVSDAKEKGYSLTMYNRRREIPEIKSSNFMQRSFGERVAMNAPIQGTAA 819 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AMI+V+ +L++H L ++++LQ+HDEL+ E E+E+ T QI++ M+ A ++ Sbjct: 820 DIIKLAMINVYNALKEHNLRSRLILQVHDELLVETAEDEVDTVKQIMLDGMKNA----VS 875 Query: 958 LRVPLKVNIKVSNNWQE 974 L+VPL+V++K +W E Sbjct: 876 LKVPLEVDLKEGKDWLE 892 Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/292 (33%), Positives = 155/292 (53%), Gaps = 13/292 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG S + RAFY P L+ +G+ NA+ GF N+L+K L + + I V FD Sbjct: 5 LILIDGHSILNRAFYGVPDLTNA-EGIHTNAMYGFLNILFKFLDEEKPDYIT----VAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++++ YK R + L Q+PL++ +A I +E +G+EADDI+ T Sbjct: 60 LSAPTFRHKVFDGYKGTRKPMQPELKQQVPLMKELLKAMNITVVEQEGYEADDILGTIAK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 + +G V+I+S D+DL+QL P T T E+ + V +G+ P + Sbjct: 120 ESAAKGIDVSIVSGDRDLLQLADEHIKIRIPKTKKGVTEVEDYYPSD-VFNLYGVTPHEF 178 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DNIPG PG+G KTA+ ++Q+Y +L+N+ + +K K + +I E E Sbjct: 179 IDVKALMGDTSDNIPGAPGVGPKTASAIIQKYHSLDNVFEHLCELKPPKAKISITENVEQ 238 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 ++SR L ++ DVPI +E D K F ++ + T Sbjct: 239 IKMSRFLSEIKIDVPIDYKVEDSKAGDFFNENSYELFKKYNFKNMLKKFENT 290 >gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] Length = 946 Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust. Identities = 210/603 (34%), Positives = 343/603 (56%), Gaps = 34/603 (5%) Query: 380 WVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS 439 ++Q L+ G +F + T +D + P+ ++S K ++ V + Sbjct: 368 FIQALKEKGQVAFDVETTDIDVMKAVPVGFSLS---WKAGEAWYVPLV------------ 412 Query: 440 TGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVL 496 G T++ E + + +KK EN IG N+KYD V+ R+G+ + D M+ +++L Sbjct: 413 AGGKTVSNEKAMKAVVKKHLENPALGVIGQNLKYDYKVMARWGVRIANPVFDTMVAAWLL 472 Query: 497 DSGRSSHDIASIAQKWLSY---TRKEILKSRK--SSIPIDKISDSQVQEHAIENSNVILQ 551 DS +++ +A K+L Y T +++ S +P+DK ++A E+++V + Sbjct: 473 DSASGIYNMDKLADKYLGYVTITYDQVVPKGALFSDVPLDK-----AVQYAAEDADVTWR 527 Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611 L+ P L K+ + + L+ P++ V++ ME+ G+++D D L EI + + Sbjct: 528 LYETFAPMLAERKMTSLMDDLEMPLLRVLADMELEGVRLDVDRLIMFGEEIDGRVEKITR 587 Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671 IY+L G +FN++SPKQL +LF + P G KT +G T + LE++ G +P+ I Sbjct: 588 EIYELCGHEFNINSPKQLQTVLFGERGLPVGRKTASGP-STAVETLEKL-VGLDPVPALI 645 Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731 L++R L K+K+TY D+LP ++ T RVHT + T TGRLAS PNLQNIPI+ D G+ Sbjct: 646 LDYRGLVKLKNTYIDALPEQVDVNTGRVHTTFIQTGTATGRLASRNPNLQNIPIRNDDGR 705 Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791 +IR AF+ +SADY+QIEL +LAH+ L + F D+HR A+ IF V E Sbjct: 706 RIRSAFVPERGYVFLSADYAQIELVVLAHVTGDEGLREAFLAGQDVHRHTASLIFNVKPE 765 Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851 V+P RR AKTINF ++YG+S FRL+ +L I S+AA++I YF R+ G+ ++++T+ Sbjct: 766 DVTPDQRRIAKTINFGVMYGMSTFRLSNELAISHSQAAEFIDSYFKRYHGVKTFVDETRK 825 Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911 + G+V T+FG H EI S ++ ER +N IQG+AADI + AM+ + +SL Sbjct: 826 KAEETGFVSTMFGHERHVPEIRSSNRMEKSGAERVVVNTIIQGTAADIMKLAMLRISRSL 885 Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 +D + ++LLQ+HDEL+FEV + S ++ +MEKA + L VPL+ +++ + Sbjct: 886 KDSGINARLLLQVHDELIFEVASGQEEKLSVLVKDAMEKA----VKLSVPLRSSVETGAS 941 Query: 972 WQE 974 W + Sbjct: 942 WGD 944 Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 91/255 (35%), Positives = 140/255 (54%), Gaps = 15/255 (5%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LF++DG IYR+++A PL + ++G V+A+ GF + L +L+ + + + + Sbjct: 47 LFIIDGFGIIYRSYFAFISRPL--KDYEGNNVSALFGFISTLLMILREWKPD----YLVI 100 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 D TFR+E+YP+YKA R PE L Q+P + A G+P I G EADDIIAT Sbjct: 101 AMDEKGPTFRHELYPEYKATRDDAPEDLHAQVPRIMEVLDALGVPHIGKVGMEADDIIAT 160 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT-CLYDTVKEEK----IDIEHVIKKWGIPPEK 178 A +G +++ DKDL+QLV T L K E ++ V ++GI ++ Sbjct: 161 LCANATAQGIESVMVTGDKDLLQLVDDMTKALRPPRKGESSYRLFGVKEVEDEFGIRADQ 220 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ A+ GDS DN+PGI G+G K A LL EYG+ E + + + R++ + + E Sbjct: 221 IIDYLAILGDSSDNVPGIKGLGEKGAIKLLTEYGSFEVLYDHLDEMSPSVRKK-LEDGRE 279 Query: 239 TARLSRKLVMLRTDV 253 LS+KLV LR D+ Sbjct: 280 MGVLSKKLVKLRDDL 294 >gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785] gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785] Length = 886 Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/528 (40%), Positives = 330/528 (62%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L+K E++ K +IK + LHR + G + D++L SY++++ +S+D+ +A Sbjct: 367 LRKMLEDKTIKKNVFDIKRTYVGLHRLNLKAEGLDYDMLLASYLVNNENNSNDLGEVAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K +K ++P D++ EH VI +L L KL + Sbjct: 427 YDDYSVKTDLEVYGKGKKQAVP----DDNEFFEHLAAKVAVIEKLKTPLLEKLKDHEQDD 482 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +YE ++ P+ V+++MEITGI+++ +L Q+ + + L LE IY +GE+FNL+SPK Sbjct: 483 LYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPK 542 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + LEQ+ +PI+ IL++RQ++KI++TY Sbjct: 543 QLGHILFEKLGLPPIKKTKTG-YSTSVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKG 600 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745 L I + R+HT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ P TK + Sbjct: 601 LLECI-QPDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTNEGKQIRKAFV-PSTKDGYI 658 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804 S DYSQ+ELR+LAH++ + + F++ DIH A +IF ++ ++V+P MRRHAK + Sbjct: 659 FSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R +A +I+ YF ++P I Y++ R+NGY ETI Sbjct: 719 NFGIVYGISDYGLSKNLGISRKQAKTFIENYFEQYPQIKNYMDDAIKKARENGYAETIMH 778 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I+S ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TKM+LQ+ Sbjct: 779 RRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQV 838 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 839 HDELIFDVPKDELDTIKKIVPEVMQSA----VKLDVPLIADSNWGHNW 882 Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 105/295 (35%), Positives = 165/295 (55%), Gaps = 17/295 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK------HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L R+ DGL NAI F NML ++ K++ ++ Sbjct: 6 LLLIDGNSVAFRAFYA---LYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTNPTN 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD VTFR E+Y DYK R K P L QLP++R + GI + E++ +EADDI Sbjct: 59 VLVAFDAGKVTFRTEMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176 I T + + E G+ V I++ D+DL QL S T + T E +H+ + G+ P Sbjct: 119 IGTLSKMGEDAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPDHMKEVNGVTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + ++AL GDS DN PG+ +G KTA+ L+Q+YG++E + + +K+ K +EN++ Sbjct: 179 TEFIDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSIEELYEHVDEMKKSKLKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 + A L++KL + D P+ + L L++ N L + + L F K + + +T Sbjct: 239 KDKAFLAKKLATIDRDSPVEVNLADTKLQEPNIEDLRNLYERLGFKKFLAELGST 293 >gi|325912689|ref|ZP_08175072.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B] gi|325478110|gb|EGC81239.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B] Length = 883 Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/532 (39%), Positives = 329/532 (61%), Gaps = 24/532 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 LKK E+++ K ++K + + L R GI++ +DIML SY+ DS ++ D+ +A Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANS 423 Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + + EI+ ++ S+ +D + H +V+ +L + P+L + L Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 H+Y+ ++ P+ ++++MEI GI++ L ++ ++ + L+ IY L+GEKFN++SP Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KLK KTKTG + T+ LE++ +PI+ +IL++RQ+SKI+STY + Sbjct: 539 KQLGVILFDKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L ++I + ++HT + T TGRL+S+EPNLQNIP+K + G++IR+AF+ P K+ Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802 L S DYSQ+ELR+LAH++ + + F+ DIH A +IFG+ N+++V+P MRRHAK Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF I+YGIS + LA L I R EA ++I YF ++P I +Y++ R+ GY ETI Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 RR +I++ +IR+ ER AIN+PIQGSAADI + AMI + LE KL TKM+L Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+F+VP EE+ ++ M++A L VPL + +NW E Sbjct: 834 QIHDELLFDVPSEELDLIRTLVPEIMQQAA----QLDVPLIADANWGHNWYE 881 Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L ++ D GL NAI F NML LL+N + +H Sbjct: 4 LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD +TFRN++Y DYK R K P L QLP+++ GI + E+ +EADDI Sbjct: 57 MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 + T + GF VTI++ D+DL QL + T K+ D+E H+ + +G+ Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++AL GD+ DN PG+ +G KTA+ L+ +YG++EN+ +IK K +E ++ Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A L +KL + P+ + ++ + L+ +L SF + L F K ++ + + D Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295 >gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda] gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda] Length = 889 Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust. Identities = 226/557 (40%), Positives = 320/557 (57%), Gaps = 40/557 (7%) Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG----ISM 483 FIDL+ TS++ S + + + KI +N+K + L + S Sbjct: 357 FIDLTAITSKEQNYATETNPWWKSSIIELLLDSSIQKITYNLKELLIFLLNFLRTEITSA 416 Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543 +DIMLM Y+L +G++ + I Q + +K Q EH + Sbjct: 417 SCIDDIMLMHYILSAGKNELSLNEIIQTY------------------NKSYSEQYSEHKV 458 Query: 544 ENSNVILQLWLL-----LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 WL L +L KLLH Y +D P+ ++ +E GI+I+ LLK + Sbjct: 459 --------CWLKNTFDNLMSELFKNKLLHCYYEIDLPICYILRNIENNGIKINVPLLKDL 510 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDL 657 SA++ + LE++IY + G++FN++SPKQLG+ILF LK P KT + T ++ L Sbjct: 511 SAQLKHKIDLLEQHIYQICGQEFNIASPKQLGEILFDVLKLPHAKVSQKTKSYSTDSEVL 570 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E ++ I +L+WRQL+K+ +TY D+LP IN T RVHT ST T RL+S Sbjct: 571 ENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRVHTTLLQTSTTTSRLSSHS 630 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+++ G K+R AF++PP K++SADYSQIELRIL++ A I L VF DI Sbjct: 631 PNLQNIPIRSEYGLKVRSAFVAPPGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDI 690 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H AA+IF +N ++V+ + RR AK INF IIYGIS F LA QL I +EAA YI YF Sbjct: 691 HSSTAAQIFKINADQVTEENRRKAKAINFGIIYGISAFGLAKQLNISNTEAAQYINHYFQ 750 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 +P I +Y+ +TK F ++GYV+ + GRR + INS + RN +RAAINAPIQ +A+ Sbjct: 751 EYPAIRQYMHETKKFAVEHGYVKNMIGRRCYIPLINSSNLTTRNFAQRAAINAPIQSTAS 810 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AMI K + A K+LLQ+HDELVFE+PEE + TA +I +ME +P + Sbjct: 811 DIAKIAMIQYEKLIYSKYPAIKLLLQVHDELVFELPEELVDTACNLIKSTMEN--IPYFS 868 Query: 958 LRVPLKVNIKVSNNWQE 974 PLKV +K+ +NW E Sbjct: 869 F--PLKVELKIGDNWGE 883 Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 176/300 (58%), Gaps = 11/300 (3%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +FL+DG FI+R ++ L H+G P+ + GF M+ ++ E + Sbjct: 5 KNKKIFLLDGYPFIFRGYFVNQDLI-SHNGTPIGGVYGFTTMIMNIINEFNPE----YMV 59 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V+FD FR++IYP+YK +RP++P L Q PLVR + I AIE++G EADD+IA Sbjct: 60 VVFDTGVDNFRHKIYPEYKNHRPELPSELKIQFPLVREIVKYLNISAIEMEGVEADDVIA 119 Query: 123 TYTYIAEKEGFA---VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 + +A K G A + I+S+DKDL+QLV+ +YD +K++ I + I+K G+ P ++ Sbjct: 120 S---LANKFGNASDEIIIVSSDKDLLQLVNNKVYIYDPIKKQYIREKETIEKLGVRPSQV 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 +LTGD DNIPGIPGIG KTA LL+++ +L NIL N + I + R+ I E+ + Sbjct: 177 RDFLSLTGDVSDNIPGIPGIGPKTAIKLLEQFDSLNNILHNYANIASPRHRKLIEEHRQL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS +LV L+ D+ + + +E+L N ++ + + FT LI + + + + +++ Sbjct: 237 AELSWQLVGLKQDLNLNLSVENLRWSPPNAEQIRTLIHKFGFTSLITKASKLFKLELSHL 296 >gi|312875574|ref|ZP_07735575.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b] gi|311088828|gb|EFQ47271.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b] Length = 883 Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/532 (39%), Positives = 329/532 (61%), Gaps = 24/532 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 LKK E+++ K ++K + + L R GI++ +DIML SY+ DS ++ D+ +A Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANS 423 Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + + EI+ ++ S+ +D + H +V+ +L + P+L + L Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 H+Y+ ++ P+ ++++MEI GI++ L ++ ++ + L+ IY L+GEKFN++SP Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KLK KTKTG + T+ LE++ +PI+ +IL++RQ+SKI+STY + Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L ++I + ++HT + T TGRL+S+EPNLQNIP+K + G++IR+AF+ P K+ Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802 L S DYSQ+ELR+LAH++ + + F+ DIH A +IFG+ N+++V+P MRRHAK Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF I+YGIS + LA L I R EA ++I YF ++P I +Y++ R+ GY ETI Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 RR +I++ +IR+ ER AIN+PIQGSAADI + AMI + LE KL TKM+L Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+F+VP EE+ ++ M++A L VPL + +NW E Sbjct: 834 QIHDELLFDVPSEELDLIRTLVPEIMQQAA----QLDVPLIADANWGHNWYE 881 Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L ++ D GL NAI F NML LL+N + +H Sbjct: 4 LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD +TFRN++Y DYK R K P L QLP+++ GI + E+ +EADDI Sbjct: 57 MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 + T + GF VTI++ D+DL QL + T K+ D+E H+ + +G+ Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++AL GD+ DN PG+ +G KTA+ L+ +YG++EN+ +IK K +E ++ Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIEQIKASKIKEYLIR 235 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A L +KL + P+ + ++ + L+ +L SF + L F K ++ + + D Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295 >gi|259500513|ref|ZP_05743415.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335] gi|259167897|gb|EEW52392.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335] Length = 890 Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/532 (39%), Positives = 329/532 (61%), Gaps = 24/532 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 LKK E+++ K ++K + + L R GI++ +DIML SY+ DS ++ D+ +A Sbjct: 371 LKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANS 430 Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + + EI+ ++ S+ +D + H +V+ +L + P+L + L Sbjct: 431 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 485 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 H+Y+ ++ P+ ++++MEI GI++ L ++ ++ + L+ IY L+GEKFN++SP Sbjct: 486 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 545 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KLK KTKTG + T+ LE++ +PI+ +IL++RQ+SKI+STY + Sbjct: 546 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 603 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L ++I + ++HT + T TGRL+S+EPNLQNIP+K + G++IR+AF+ P K+ Sbjct: 604 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 660 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802 L S DYSQ+ELR+LAH++ + + F+ DIH A +IFG+ N+++V+P MRRHAK Sbjct: 661 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 720 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF I+YGIS + LA L I R EA ++I YF ++P I +Y++ R+ GY ETI Sbjct: 721 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 780 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 RR +I++ +IR+ ER AIN+PIQGSAADI + AMI + LE KL TKM+L Sbjct: 781 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 840 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+F+VP EE+ ++ M++A L VPL + +NW E Sbjct: 841 QIHDELLFDVPSEELDLIRTLVPEIMQQAA----QLDVPLIADANWGHNWYE 888 Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L ++ D GL NAI F NML LL+N + +H Sbjct: 11 LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 63 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD +TFRN++Y DYK R K P L QLP+++ GI + E+ +EADDI Sbjct: 64 MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 123 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 + T + GF VTI++ D+DL QL + T K+ D+E H+ + +G+ Sbjct: 124 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 182 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++AL GD+ DN PG+ +G KTA+ L+ +YG++EN+ +IK K +E ++ Sbjct: 183 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 242 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A L +KL + P+ + ++ + L+ +L SF + L F K ++ + + D Sbjct: 243 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 302 >gi|309803215|ref|ZP_07697312.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d] gi|308164723|gb|EFO66973.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d] Length = 883 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/532 (39%), Positives = 329/532 (61%), Gaps = 24/532 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 LKK E+++ K ++K + + L R GI++ +DIML SY+ DS ++ D+ +A Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANS 423 Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + + EI+ ++ S+ +D + H +V+ +L + P+L + L Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 H+Y+ ++ P+ ++++MEI GI++ L ++ ++ + L+ IY L+GEKFN++SP Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KLK KTKTG + T+ LE++ +PI+ +IL++RQ+SKI+STY + Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L ++I + ++HT + T TGRL+S+EPNLQNIP+K + G++IR+AF+ P K+ Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802 L S DYSQ+ELR+LAH++ + + F+ DIH A +IFG+ N+++V+P MRRHAK Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF I+YGIS + LA L I R EA ++I YF ++P I +Y++ R+ GY ETI Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 RR +I++ +IR+ ER AIN+PIQGSAADI + AMI + LE KL TKM+L Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+F+VP EE+ ++ M++A L VPL + +NW E Sbjct: 834 QIHDELLFDVPSEELDLIKTLVPKIMQQAA----QLDVPLIADANWGHNWYE 881 Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L ++ D GL NAI F NML LL+N + +H Sbjct: 4 LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD +TFRN++Y DYK R K P L QLP+++ GI + E+ +EADDI Sbjct: 57 MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDI 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 + T + GF VTI++ D+DL QL + T K+ D+E H+ + +G+ Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++AL GD+ DN PG+ +G KTA+ L+ +YG++EN+ +IK K +E ++ Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A L +KL + P+ + ++ + L+ +L SF + L F K ++ + + D Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295 >gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353] gi|224955526|gb|EEG36735.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353] Length = 878 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 200/494 (40%), Positives = 310/494 (62%), Gaps = 17/494 (3%) Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD--SQVQEHAIE 544 +D+ + +Y+L+ +S++D IA+ +L +++L SRK + + SQ +E ++ Sbjct: 394 QDVGIQAYLLNPLQSAYDYEDIARDYL----RQMLPSRKEVCGKKALEEVFSQEEEKTVQ 449 Query: 545 N----SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 S V + L+ KL ++ +Y +++P + + ME GI +++D LK+ Sbjct: 450 MAAYLSYVPFHAYPLVLEKLREAEMEELYLTIERPTVATLYDMEKYGITVEKDALKEYGD 509 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 ++ + LE+NIY+ +G+ FN++SPKQLG ILF LK P KTKTG + T+A LE++ Sbjct: 510 QLVGRIEELEKNIYEQAGKTFNINSPKQLGVILFEDLKMPFAKKTKTG-YSTSADILEKL 568 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 D PI+ NILE+RQL+K+KSTYAD L I + ++H+ + T TGRL+S +PNL Sbjct: 569 -APDYPIVSNILEYRQLTKLKSTYADGLAAFI-QEDGKIHSIFHQKVTATGRLSSSDPNL 626 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIPI+ LG+ IR+ F+ +SADYSQIELR+LAH+A L + + DIHRM Sbjct: 627 QNIPIRMPLGRAIRKVFVPDSGYVFVSADYSQIELRVLAHMAGDEHLIDAYRHGEDIHRM 686 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A+++FGV E+V+P +RR AK +NF I+YGIS F L+ L+I R EA++YI +YF +P Sbjct: 687 TASQVFGVPFEEVTPLLRRSAKAVNFGIVYGISAFGLSQDLKISRKEASEYIDKYFATYP 746 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 GI Y++ F ++ GYV+T++GR E++S R+ ER A+N+ IQG+AADI Sbjct: 747 GIKTYLDGNVAFAKKEGYVKTLYGRVRPIPELSSSNFMQRSFGERVAMNSSIQGTAADII 806 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 + AMI V K L++ KLA++++LQIHDEL+ E E+E+ +I+ M A +L+V Sbjct: 807 KIAMIRVSKRLQEEKLASRLILQIHDELLIETKEDEVEEVRKILKEEMMGAA----DLKV 862 Query: 961 PLKVNIKVSNNWQE 974 PL ++I+ W E Sbjct: 863 PLSIDIEEGKTWYE 876 Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 94/259 (36%), Positives = 146/259 (56%), Gaps = 13/259 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + + L+DG S + RAFY P L+ +G NA+ GF N++ + ++ + +H V Sbjct: 3 DKIMLLDGHSLLNRAFYGLPDLTNA-EGKHTNAVLGFLNIMLRYVEEEK----PTHLLVA 57 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R +P L Q+PL++ + IP I G EADDI+ T Sbjct: 58 FDRKEPTFRHIKYKEYKGTRKPMPAELHEQVPLMKEVLKTMEIPIITQAGIEADDILGTI 117 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 AE+ GF V I+S D+DL+QL + P T TV E+ + E V + +G+ P Sbjct: 118 GKEAEEAGFDVAIVSGDRDLLQLATKKVKIKIPKTKASGTVTEDYYE-EDVRELYGVSPT 176 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 + + ++ L GD+ DNIPG+PGIG KTAA +++EY ++EN + IK + + N+ EY Sbjct: 177 EFIDMKGLMGDTSDNIPGVPGIGEKTAAKIIKEYHSIENAHEHIEEIKPARAKNNLQEYY 236 Query: 238 ETARLSRKLVMLRTDVPIT 256 E A +S+ L ++ D I+ Sbjct: 237 EQAIMSKDLATIKKDCDIS 255 >gi|300361188|ref|ZP_07057365.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03] gi|300353807|gb|EFJ69678.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03] Length = 886 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 213/528 (40%), Positives = 328/528 (62%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L++ E++ K +IK + LHR I G + D++L SY++++ +S+D+ +A Sbjct: 367 LRQMLEDKKIKKNVFDIKRTYVGLHRLDIDAEGLDYDMLLASYLVNNENNSNDLGEVAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K +K ++P D + EH VI +L L KL + Sbjct: 427 YGDYSVKTDLEVYGKGKKKAVP----EDDEFFEHLAAKVVVIEKLKQPLLEKLKDHEQDD 482 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +YE ++ P+ V+++MEITGI+++ +L Q+ + + L LE IY +GE+FNL+SPK Sbjct: 483 LYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFALKLQELEHKIYQQAGEEFNLNSPK 542 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + LEQ+ +PI+ IL++RQ++KI++TY Sbjct: 543 QLGHILFEKLNLPPIKKTKTG-YSTSVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKG 600 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745 L I + R+HT Y T TGRL+S++PNLQNIP +TD G++IR+AF+ P TK + Sbjct: 601 LLECI-QPDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTDEGKQIRKAFV-PSTKDGYI 658 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804 S DYSQ+ELR+LAH++ + + F++ DIH A +IF ++ ++V+P MRRHAK + Sbjct: 659 FSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R +A +I YF ++P I +Y++K R+ GY ETI Sbjct: 719 NFGIVYGISDYGLSKNLGISRKQAKTFIDNYFEQYPQIKDYMDKAIKEAREKGYAETIMH 778 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I+S ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TKM+LQ+ Sbjct: 779 RRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQV 838 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+F+VP+ E+ T +I+ M+ A + L VPL + +NW Sbjct: 839 HDELIFDVPKAELDTIKKIVPEVMQSA----VTLDVPLIADSNWGHNW 882 Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 105/292 (35%), Positives = 164/292 (56%), Gaps = 11/292 (3%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L R DGL NAI F NML ++ K++ S+ V Sbjct: 6 LLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTDPSNVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y DYK R K P L QLP++R + GI + E++ +EADDII T Sbjct: 62 AFDAGKVTFRTKMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179 + + E+ G+ V I++ D+DL QL S T + T E EH+ + G+ P + Sbjct: 122 LSKMGEEAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPEHMKEVNGVTPTEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DN PG+ +G KTA+ L+Q+YG++E + + +K+ K +EN++ + Sbjct: 182 IDMKALMGDNSDNYPGVTKVGPKTASRLIQKYGSVEKLYEHVDEMKKSKLKENLINDKDK 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 A L++KL + D P+ + L LE+ N L + + L F K + + + Sbjct: 242 AFLAKKLATIDRDSPVEVTLADTKLEEPNIEDLRNLYERLGFKKFLAELGVS 293 >gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] Length = 890 Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust. Identities = 203/534 (38%), Positives = 310/534 (58%), Gaps = 10/534 (1%) Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDI 505 ++ L L + + LKIG N+KYD VL R G+S+ G D M+ Y+L+ ++SH + Sbjct: 363 RQALDLLGQALADPGLLKIGQNLKYDLNVLRRAGLSVAGPLFDTMVADYLLNPAKASHGL 422 Query: 506 ASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 +IA + L +E + + + + +A E+++V LQ L PKL Sbjct: 423 EAIAAEHLGRGVIGFEEAVGGKGKGFA--QAPPERAVPYAAEDADVALQAAQALGPKLDE 480 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 L +++ L+ P+ ++++ME G+ ID + L ++SAE+ + L + E+ IY L+G +FN Sbjct: 481 ADLRRLFDELEMPLTPLLAKMERYGVLIDAEELGRLSAELDQALAAGEQKIYALAGHEFN 540 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 ++S +QLG +LF +L KTK +T + I +P+ +L +R +K+KS Sbjct: 541 INSTQQLGQVLFDELGLSQVKKTKKRTAYSTDMSVLAILAAQHPLPAEVLAYRANAKLKS 600 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D+LP IN T RVHT ++ T TGRL+S +PNLQNIP++ +LG+++R F+ P Sbjct: 601 TYVDALPALINPDTGRVHTSFNQCVTATGRLSSSDPNLQNIPVRGELGRRMRGCFVPAPG 660 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 + L+SADYSQIELR+LAH+++ + Q LD+H AA IF V V+ +MR AK Sbjct: 661 RLLVSADYSQIELRVLAHLSQDPLMLQDMAEGLDVHTQTAARIFDVMPGLVTREMRVRAK 720 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 T+NF ++YG+S FRLA + + R+EA D I RY R+ G+ + ++ + RQ GYV TI Sbjct: 721 TVNFGVLYGMSAFRLAREQGVSRAEAEDIIARYLGRYQGVARFQQQNLSQCRQRGYVTTI 780 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 GRR INS R ER A+N PIQGSAADI + AM+ V + L H + M+L Sbjct: 781 LGRRRFLPAINSSDRQAREAAERVALNTPIQGSAADIIKLAMLRVDEMLTRHYPDSPMIL 840 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 Q+HDELVFE PE + +Q + ME + L V LKV++ +W + + Sbjct: 841 QVHDELVFETPEGGVEQFAQAVRRCMEDV----LKLDVELKVDVGWGRDWAQAH 890 Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 130/291 (44%), Positives = 184/291 (63%), Gaps = 5/291 (1%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + +FL+D S +I+RAF+A L+ DG+P A+ GF NML K+L +R SH Sbjct: 1 MPDKPTIFLLDASGYIHRAFHAVKGLA-TSDGVPTGAVFGFVNMLLKVLAEARP----SH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV++D TFR++I+P YKANRP + L QLPLVR A +PA+E++GFEADD+ Sbjct: 56 LAVVYDAKGPTFRHQIFPAYKANRPPMDPALKAQLPLVRQLVTALCLPAVEMEGFEADDL 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 +AT A ++GF V ++S DKDL+QLV P L+DT+K+ ++ E V +K G+PPE V Sbjct: 116 MATLARQAREQGFEVVLVSADKDLLQLVGPGVSLWDTMKDLRLGPEEVRQKTGLPPELQV 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +QALTGD+ DN+PG+PG+G KTA LL E+ LE +L A +K+ K RE+++E + A Sbjct: 176 DMQALTGDASDNVPGVPGVGPKTAVKLLAEHPGLEAVLAAAPAMKKSKLRESLIENKDMA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 LSR+LV LR D P+ + + + L+ L LEF KLI A Sbjct: 236 LLSRRLVRLRDDAPLRFEPAAFRVVEPDRDVLLPLLTRLEFNKLIKDFAAA 286 >gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 886 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/528 (40%), Positives = 329/528 (62%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L+K E++ K +IK + LHR + G + D++L SY++++ +S+D+ +A Sbjct: 367 LRKMLEDKTIKKNVFDIKRTYVGLHRLNLKAEGLDYDMLLASYLVNNENNSNDLGEVAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K +K ++P D++ EH VI +L L KL + Sbjct: 427 YDDYSVKTDLEVYGKGKKQAVP----DDNEFFEHLAAKVAVIEKLKTPLLEKLKDHEQDD 482 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +YE ++ P V+++MEITGI+++ +L Q+ + + L LE IY +GE+FNL+SPK Sbjct: 483 LYETIEIPAAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEFNLNSPK 542 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + LEQ+ +PI+ IL++RQ++KI++TY Sbjct: 543 QLGHILFEKLGLPPIKKTKTG-YSTSVEVLEQLKM-KSPIVSEILDYRQIAKIQNTYVKG 600 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--L 745 L I + R+HT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ P TK + Sbjct: 601 LLECI-QPDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTNEGKQIRKAFV-PSTKDGYI 658 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804 S DYSQ+ELR+LAH++ + + F++ DIH A +IF ++ ++V+P MRRHAK + Sbjct: 659 FSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAV 718 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R +A +I+ YF ++P I Y++ R+NGY ETI Sbjct: 719 NFGIVYGISDYGLSKNLGISRKQAKTFIENYFEQYPQIKNYMDDAIKKARENGYAETIMH 778 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I+S ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TKM+LQ+ Sbjct: 779 RRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQV 838 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 839 HDELIFDVPKDELDTIKKIVPEVMQSA----VKLDVPLIADSNWGHNW 882 Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 105/295 (35%), Positives = 165/295 (55%), Gaps = 17/295 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK------HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L R+ DGL NAI F NML ++ K++ ++ Sbjct: 6 LLLIDGNSVAFRAFYA---LYRQLDRFTSPDGLHTNAIFTFKNMLDAIM----KQTNPTN 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD VTFR E+Y DYK R K P L QLP++R + GI + E++ +EADDI Sbjct: 59 VLVAFDAGKVTFRTEMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176 I T + + E G+ V I++ D+DL QL S T + T E +H+ + G+ P Sbjct: 119 IGTLSKMGEDAGYTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPDHMKEVNGVTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + ++AL GDS DN PG+ +G KTA+ L+Q+YG++E + + +K+ K +EN++ Sbjct: 179 TEFIDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSIEELYEHVDEMKKSKLKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 + A L++KL + D P+ + L L++ N L + + L F K + + +T Sbjct: 239 KDKAFLAKKLATIDRDSPVEVTLADTKLQEPNIEDLRNLYERLGFKKFLAELGST 293 >gi|45656484|ref|YP_000570.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599719|gb|AAS69207.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 917 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 197/516 (38%), Positives = 321/516 (62%), Gaps = 11/516 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKE 519 K+G NIKYD +VL +G + + D ML SYVL H++ +A+++L+Y T ++ Sbjct: 406 KVGQNIKYDLIVLENHGFVLNNIQFDTMLASYVLRPEGRRHNMDDLAKEFLNYNTITYED 465 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 ++ + K + I QV E+A E+++V +L+ + R + + + ++ P+I V Sbjct: 466 LVGTGKKKKELTDIDPEQVAEYAAEDADVTFRLYQIFRKSIKDSGVEPILREMEMPLISV 525 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 +++ME TGI +D ++++ + + + LE I+ +G FN++S K+L ILF LK Sbjct: 526 LAKMEKTGIALDVPYFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQKILFDDLKL 585 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 KT+TG + T + LE++ G++PII+ +L++R+ +K+KSTY D+LP +N +T R+ Sbjct: 586 RIVKKTQTG-FSTDHEVLEEL-AGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRI 643 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRIL 758 HT Y+ TGRL+S +PNLQNIPI+ G+ +R+ F + +++S DYSQIELRI+ Sbjct: 644 HTSYNQTIAATGRLSSTDPNLQNIPIRDREGRLLRKGFTVDSNDYEILSLDYSQIELRIM 703 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AHI+K + + + + LDIH+ AA ++GV V+ +MR AK +NFS+IYG++P+ L+ Sbjct: 704 AHISKDPAMLEAYNHGLDIHKRTAAALYGVPEIDVTHEMRDKAKVVNFSVIYGVTPYGLS 763 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 LRIPR EA +I+RY ++PG+ Y++ F +NGYV+T+ GRR +INS S Sbjct: 764 RNLRIPRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPVTDINSTHKS 823 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 + +R AIN+PIQG++AD+ + AMI +H+ +E ++MLLQ+HDELVFEV ++E Sbjct: 824 AKEAAKRIAINSPIQGTSADMIKIAMIKIHEDIEKKHYKSRMLLQVHDELVFEVHKKEKD 883 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME A ++L +P+ V K NW E Sbjct: 884 DFKASMKKHMETA----MSLDLPIVVEGKFGVNWDE 915 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 94/292 (32%), Positives = 148/292 (50%), Gaps = 11/292 (3%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L ++DG +F++RA+YA L+ G P A GF ML+KL+Q+ SH A+ Sbjct: 4 LLIIDGHAFVFRAYYAFGASNLTNSKTGKPSGATFGFFKMLFKLIQDY----TPSHIAMT 59 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD R +I+ DYKANR +PE L PQ+ V + G ++++G EADD+I T Sbjct: 60 FDPGGPLERGKIFQDYKANRKPMPEDLRPQIQEVMDTLEKIGFKILKVEGQEADDVIGTL 119 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KIDIEHVIKKWGIPPEKM 179 + I S DKDL QL+ K+ +ID V ++ G+ +++ Sbjct: 120 CETYRSTAKEILIFSGDKDLYQLLEKKNIKMLRGKKGVTEFVEIDSAWVKEELGVDVKQI 179 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + GD+ DNIPG+ GIG K A+ LLQEY +L+ + N +IK + + E E Sbjct: 180 PDYMGIVGDTSDNIPGVKGIGDKGASKLLQEYKSLDGVYKNLEKIKNPGLKTKLSEQKEN 239 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 A LS++L +R D+ + I + + + D I + K+ + L +A + Sbjct: 240 AYLSKQLATIRRDLQLGITEKDIEIPDYKSDAAILYFKSQGYNVLSKDLAKS 291 >gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7] gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7] gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208] gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3] Length = 879 Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/531 (39%), Positives = 323/531 (60%), Gaps = 26/531 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K + E+E K + K + L GI ++G E D +L +Y+++ G S D+AS+A++ Sbjct: 360 FKSWAEDESKKKWVFDSKRSVVALRWQGIELKGTEFDALLAAYIINPGNSYDDVASVAKE 419 Query: 512 W----LSYTRKEILKSRKSSIPIDK-ISDSQVQEHAIENSNVILQLWLLLRPKLI----V 562 + +S K K ++P +K ++D ++ A NS LR KL+ Sbjct: 420 YGLNIVSKDEAVYGKGAKHAVPAEKELADHLARKAAAVNS---------LRDKLLHALKE 470 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 L +YE L+ P+ ++ +ME G+++D + LK++ E+ L EE I+D++GE FN Sbjct: 471 NNQLELYEDLELPLALILGEMESMGVKVDVERLKRMGEELRAKLKEYEEKIHDIAGEPFN 530 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 ++SPKQLG ILF KL P KTKTG + T+A LE++ + I+ IL++RQ+ K++S Sbjct: 531 INSPKQLGVILFDKLGLPVVKKTKTG-YSTSADVLEKL-ADKHDIVAYILQYRQIGKLQS 588 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPP 741 TY + L K + +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AF+ S P Sbjct: 589 TYIEGLLKVTRKDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEP 648 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 + +ADYSQIELR+LAHI+K L + F N +DIH A ++F V+ ++V+ MRR A Sbjct: 649 DWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSEDEVTQAMRRQA 708 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +NF I+YGIS + L+ L I R EA +I RY FPG+ Y+E++ +Q GYV T Sbjct: 709 KAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLESFPGVKAYMEESVQEAKQKGYVTT 768 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 + RR + E+ S ++R+ ER A+N PIQGSAADI ++AMI + L++ L ++L Sbjct: 769 LMQRRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMAAELKEKNLKARLL 828 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LQ+HDEL+FE P+EEI +++ ME A ++L VPLK + +W Sbjct: 829 LQVHDELIFEAPKEEIKILEKLVPEVMEHA----LDLDVPLKADYASGPSW 875 Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 116/319 (36%), Positives = 177/319 (55%), Gaps = 18/319 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDG+S YRAF+A PLLS + G+ NA+ GF +L K+L++ + +H Sbjct: 1 MTERKKLVLVDGNSLAYRAFFALPLLSNEK-GIHTNAVYGFAMILMKMLEDEK----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+ + +YK R K P L Q+P +R A+ I E+ +EADDI Sbjct: 56 MLVAFDAGKTTFRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYNISRYELPEYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T AEK+GF V + S DKDL QL + T + T K E EHV +K+G+ P Sbjct: 116 IGTLAVSAEKDGFEVKVFSGDKDLTQLATGKTTVAITRKGITDVEDYTPEHVEEKYGLTP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ ++ L GDS DNIPG+PG+G KTA LL+++ ++E +L + + KK +E + EY Sbjct: 176 LQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFHSVEKLLDSIDEVSGKKLKEKLGEY 235 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY---- 292 E A +S++L + T+ PI + LE L + + ++++ K L F L+ R+ Sbjct: 236 KEQALMSKELATIMTNAPIEVKLEDLDYQGFDREQVVAIFKDLGFNTLLERLGEESGETA 295 Query: 293 -----DCDAANIEPVVLDI 306 D D +E + D+ Sbjct: 296 EEDFEDIDVETVEEITEDM 314 >gi|312874207|ref|ZP_07734241.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d] gi|311090277|gb|EFQ48687.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d] Length = 883 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/532 (39%), Positives = 329/532 (61%), Gaps = 24/532 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 LKK E+++ K ++K + + L R GI++ +DIML SY+ DS ++ D+ +A Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANS 423 Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + + EI+ ++ S+ +D + H +V+ +L + P+L + L Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 H+Y+ ++ P+ ++++MEI GI++ L ++ ++ + L+ IY L+GEKFN++SP Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KLK KTKTG + T+ LE++ +PI+ +IL++RQ+SKI+STY + Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L ++I + ++HT + T TGRL+S+EPNLQNIP+K + G++IR+AF+ P K+ Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802 L S DYSQ+ELR+LAH++ + + F+ DIH A +IFG+ N+++V+P MRRHAK Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF I+YGIS + LA L I R EA ++I YF ++P I +Y++ R+ GY ETI Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 RR +I++ +IR+ ER AIN+PIQGSAADI + AMI + LE KL TKM+L Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+F+VP EE+ ++ M++A L VPL + +NW E Sbjct: 834 QIHDELLFDVPSEELDLIKILVPKIMQQAA----QLDVPLIADANWGHNWYE 881 Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 102/297 (34%), Positives = 163/297 (54%), Gaps = 13/297 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA K DGL NAI F NML LL+N + +H V Sbjct: 4 LLLIDGNSVAFRAFYALYKQLDKFKSPDGLHTNAIFTFKNMLDVLLKNIQ----PTHMLV 59 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD +TFRN++Y DYK R K P L QLP+++ GI + E+ +EADDI+ T Sbjct: 60 AFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDILGT 119 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEK 178 + GF VTI++ D+DL QL + T K+ D+E H+ + +G+ P++ Sbjct: 120 MAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVTPKQ 178 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + ++AL GD+ DN PG+ +G KTA+ L+ +YG++EN+ +++K K +E ++ Sbjct: 179 FIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIAQVKASKIKEYLIRDKN 238 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A L +KL + P+ + ++ + L+ +L SF + L F K ++ + + D Sbjct: 239 NAILGKKLATIDCTSPVDLKIDDVELQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295 >gi|194466653|ref|ZP_03072640.1| DNA polymerase I [Lactobacillus reuteri 100-23] gi|194453689|gb|EDX42586.1| DNA polymerase I [Lactobacillus reuteri 100-23] Length = 888 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 217/528 (41%), Positives = 320/528 (60%), Gaps = 18/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK +++ K N K + LHR GI + D++L SY+L++ +S+D+ +AQ+ Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHRLGIPLENINFDLLLASYLLNTNDNSNDLGQVAQE 425 Query: 512 WLSY----TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 Y T +E+ K K ++P D D H + I QL L KL K Sbjct: 426 H-GYDDVRTDEEVYGKGAKRTVPDD---DETFFSHLATKARAIEQLRKDLFAKLDENKQT 481 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 +Y ++ P+ V+++MEI G+ +D LK + +++++ L +E IY +GE+FN++S Sbjct: 482 PLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAGEEFNINST 541 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KLK P KTKTG +TA D+ + +PI++ ILE+RQ++K++STY Sbjct: 542 KQLGHILFEKLKLPVIKKTKTGY--STAVDVLEKLADKSPIVEQILEYRQIAKLQSTYIA 599 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745 L I+ Q++HT Y T TGRL+S++PNLQNIP++ G+ IR+AF+ S ++ Sbjct: 600 GLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQI 659 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTI 804 S+DYSQ+ELR+LAHI L + F+N DIH A IF + + ++ MRR AK + Sbjct: 660 FSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAV 719 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + LA ++ + R+EA ++I+ YFH FPG+ +YI T F ++NGYVETI Sbjct: 720 NFGIVYGISDYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITH 779 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I++ S R+ ER A+N PIQGSAADI + AMI + LE L KMLLQI Sbjct: 780 RRRYLPDIHAKSFSKRSFAERTAMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMLLQI 839 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDELVFE P+EEI S+++ M+ A + L VPLKV+ K + W Sbjct: 840 HDELVFEAPKEEIPVLSELVPKVMDSA----VKLDVPLKVDSKYGDTW 883 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 113/314 (35%), Positives = 167/314 (53%), Gaps = 13/314 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S ++RAF+A K DGL AI GF ML +LQN + ++ V Sbjct: 5 LLLIDGNSIVFRAFFAMHNQMDKFTNKDGLHTAAIYGFKLMLDHVLQNFKPDAAL----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y DYK R K P L Q+P VR + G+ + E+ +EADDII T Sbjct: 61 AFDAGKVTFRTKMYDDYKGGRNKTPNELTEQIPYVRELIKDSGLHSYELPNYEADDIIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179 A+ G+ I++ D+DL QL S T + T K E HV +K GI P ++ Sbjct: 121 LAKQADDAGYKTLIVTGDRDLTQLASENTTVAVTHKGVTDTEHYTPAHVEEKLGITPRQI 180 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GDS DN PG+ IG KTA L++++G++E + + +K+ K +E+++E E Sbjct: 181 IDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVEELYDHIDDLKKSKMKEHLIEDEEV 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR--VATTYDCDAA 297 AR + L + D PI I L+ L + LI F K + F + + V T + D A Sbjct: 241 ARQCKTLATILQDAPIKIGLDDLQYQGPQTDDLIKFYKEMGFKSFLKKMDVDGTGEEDEA 300 Query: 298 NIEPVVLDINTTEN 311 I P+ T +N Sbjct: 301 EIAPIDYTALTKDN 314 >gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3] gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3] Length = 876 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/463 (42%), Positives = 298/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 431 KGAKRAVPDEPV----LAEHLVRKAAAI---WALERPFLDELRRNEQDRLLVE------- 476 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 477 -LEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLG 535 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 536 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 593 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 594 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 653 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +NF I+ Sbjct: 654 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 713 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 714 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 773 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L ++LLQ+HDEL+ Sbjct: 774 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELI 833 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 834 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 872 Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 118/289 (40%), Positives = 173/289 (59%), Gaps = 11/289 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS YRAF+A PLL G+ NA+ GF ML K+L E +H V FD Sbjct: 5 LVLIDGSSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEEPTHMLVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E + +YK R + P L Q PL+R +A+ IPA E++ +EADDII T Sbjct: 60 AGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGTLAA 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181 AE+EGF V +IS D+DL QL SP + D K+ DIE V +K+G+ PE++V Sbjct: 120 RAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVREKYGLTPEQIVD 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +E + ++ E A Sbjct: 179 LKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQHREMAL 238 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 LS+KL +R D P+ + L+ + + + ++++ K L F + ++ + Sbjct: 239 LSKKLAAIRRDAPVELSLDDIAYQGEDREKVVALFKELGFQSFLEKMES 287 >gi|270290448|ref|ZP_06196673.1| DNA polymerase I [Pediococcus acidilactici 7_4] gi|270281229|gb|EFA27062.1| DNA polymerase I [Pediococcus acidilactici 7_4] Length = 885 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/504 (41%), Positives = 321/504 (63%), Gaps = 17/504 (3%) Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKS-RKSSIPI 530 LHR G+++ DI+L SY+LD+ +S+D+ +A + T E+ + K ++P Sbjct: 388 LHRLGVTLNSINYDILLQSYLLDTNDNSNDLGQLAHEHDIEDIKTDAEVYGTGAKRAVPA 447 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 + + EH +VI +L L+ +LI + +Y +++ P+ V+++MEI+GI++ Sbjct: 448 KDV----LLEHLAHKIDVIGELGRRLQEELINNQQADLYWKIELPLSIVLAKMEISGIKV 503 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D++ L + +E+++ L LE I+ +GE+FN++SPKQLG ILF KL+FP KTKTG + Sbjct: 504 DRERLGAMQSELTERLSELESQIHQEAGEEFNINSPKQLGHILFEKLEFPVIKKTKTG-Y 562 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T LE++ G +PII +IL++R ++KIKSTY D L I+ Q+VHT Y T T Sbjct: 563 STAVNVLEKLR-GYSPIIDHILDYRTIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQT 621 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769 GRL+S +PNLQNIPI+ + G+KIR+AF+ S ++S+DYSQIELR+LAHI L + Sbjct: 622 GRLSSTDPNLQNIPIRIEEGKKIRQAFVPSHEGWHILSSDYSQIELRVLAHITGDHHLQE 681 Query: 770 VFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+ DIH A IFG+ + +V+P +RR AK +NF I+YGIS + L+ + I R +A Sbjct: 682 AFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGISRKDA 741 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +I YF +PG+ +Y++ + R+ GYVETI RR + +I++ S+R+ ER A+ Sbjct: 742 KRFIDTYFKEYPGVKKYVDGSVETAREKGYVETIAHRRRYLPDIHASNFSVRSFAERTAM 801 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 N PIQGSAADI + AMI++ LE +L T+MLLQ+HDEL+FEVP+EE++ +++ M Sbjct: 802 NTPIQGSAADIIKIAMINMQNELEKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVM 861 Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972 + A I L VPLKV NNW Sbjct: 862 DSA----IKLDVPLKVETSWGNNW 881 Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 158/285 (55%), Gaps = 11/285 (3%) Query: 4 ENHLFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 ++ L L+DG+S +R+F+A L K+ DGL NAI GF ML +L K+ + Sbjct: 3 KDKLLLIDGNSIAFRSFFALHNSLEKFKNPDGLHTNAIFGFNKMLDSIL----KQYQPTA 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P L Q+P ++ +GI E+ +EADDI Sbjct: 59 ALVAFDAGKTTFRTEMYDDYKGGRSKTPPELSEQMPYIKQLLTGYGIKTYELPNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T + AE++ + V +++ D+DL QL S T + T K E+ HV +K GI P Sbjct: 119 IGTLSLAAERDNYEVVVVTGDRDLTQLSSAETTVAVTKKGVSEVEEYTPRHVKEKLGITP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E+++ L+ L GD+ DN PG+ +G KTA LL+++G +EN+ N +K K +E+++E Sbjct: 179 EQIIDLKGLAGDTSDNYPGVTKVGEKTALKLLKQFGTIENLYDNLDDLKPSKMKEHLIED 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 + A S+ L ++ D P+ I L L + N L F + ++F Sbjct: 239 RDAAFTSKTLATIKRDAPVEIGLADLKYDGKNITFLQEFYQKMKF 283 >gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus] Length = 878 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/463 (42%), Positives = 298/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 433 KGAKRAVPDEPV----LAEHLVRKAAAI---WALERPFLDELRRNEQDRLLVE------- 478 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 479 -LEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLG 537 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 538 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 595 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 596 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 655 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +NF I+ Sbjct: 656 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 715 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 716 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 775 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L ++LLQ+HDEL+ Sbjct: 776 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELI 835 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 836 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 874 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 119/295 (40%), Positives = 177/295 (60%), Gaps = 11/295 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M+ + L L+DGSS YRAF+A PLL G+ NA+ GF ML K+L E +H Sbjct: 1 MRLKKKLVLIDGSSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEEPTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R + P L Q PL+R +A+ IPA E++ +EADDI Sbjct: 56 MLVAFDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 I T AE+EGF V +IS D+DL QL SP + D K+ DIE V +K+G+ Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPEAVREKYGLT 174 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PE++V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +E + + Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKETLRQ 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 + E A LS+KL +R D P+ + L+ ++ + + ++++ K L F + ++ + Sbjct: 235 HREMALLSKKLAAIRRDAPVELSLDDIVYQGEDREKVVALFKELGFQSFLEKMES 289 >gi|304384670|ref|ZP_07367016.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284] gi|304328864|gb|EFL96084.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284] Length = 885 Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust. Identities = 211/504 (41%), Positives = 321/504 (63%), Gaps = 17/504 (3%) Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEILKS-RKSSIPI 530 LHR G+++ DI+L SY+LD+ +S+D+ +A + T E+ + K ++P Sbjct: 388 LHRLGVTLNSINYDILLQSYLLDTNDNSNDLGQLAHEHDIEDIKTDAEVYGTGAKRAVPA 447 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 + + EH +VI +L L+ +LI + +Y +++ P+ V+++MEI+GI++ Sbjct: 448 KDV----LLEHLAHKIDVIGELGRRLQEELINNQQADLYWKIELPLSIVLAKMEISGIKV 503 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D++ L + +E+++ L LE I+ +GE+FN++SPKQLG ILF KL+FP KTKTG + Sbjct: 504 DRERLGAMQSELTERLSELESQIHQEAGEEFNINSPKQLGHILFEKLEFPVIKKTKTG-Y 562 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T LE++ G +PII +IL++R ++KIKSTY D L I+ Q+VHT Y T T Sbjct: 563 STAVNVLEKLR-GYSPIIDHILDYRTIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQT 621 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQ 769 GRL+S +PNLQNIPI+ + G+KIR+AF+ S ++S+DYSQIELR+LAHI L + Sbjct: 622 GRLSSTDPNLQNIPIRIEEGKKIRQAFVPSHEGWHILSSDYSQIELRVLAHITGDHHLQE 681 Query: 770 VFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEA 828 F+ DIH A IFG+ + +V+P +RR AK +NF I+YGIS + L+ + I R +A Sbjct: 682 AFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGISRKDA 741 Query: 829 ADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAI 888 +I YF +PG+ +Y++ + R+ GYVETI RR + +I++ S+R+ ER A+ Sbjct: 742 KRFIDTYFKEYPGVKKYVDGSVETAREKGYVETIAHRRRYLPDIHASNFSVRSFAERTAM 801 Query: 889 NAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 N PIQGSAADI + AMI++ LE +L T+MLLQ+HDEL+FEVP+EE++ +++ M Sbjct: 802 NTPIQGSAADIIKIAMINMQNELEKRQLKTRMLLQVHDELIFEVPDEEMSVIKELVPKVM 861 Query: 949 EKACLPKINLRVPLKVNIKVSNNW 972 + A I L VPLKV NNW Sbjct: 862 DSA----IKLDVPLKVETSWGNNW 881 Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 103/285 (36%), Positives = 158/285 (55%), Gaps = 11/285 (3%) Query: 4 ENHLFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 ++ L L+DG+S +R+F+A L K+ DGL NAI GF ML +L K+ + Sbjct: 3 KDKLLLIDGNSIAFRSFFALHNSLEKFKNPDGLHTNAIFGFNKMLDSIL----KQYQPTA 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P L Q+P ++ +GI E+ +EADDI Sbjct: 59 ALVAFDAGKTTFRTEMYDDYKGGRSKTPPELSEQMPYIKQLLTGYGIKTYELPNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T + AE++ + V +++ D+DL QL S T + T K E+ HV +K GI P Sbjct: 119 IGTLSLAAERDNYEVVVVTGDRDLTQLSSAETTVAVTKKGVSEVEEYTPRHVKEKLGITP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E+++ L+ L GD+ DN PG+ +G KTA LL+++G +EN+ N +K K +E+++E Sbjct: 179 EQIIDLKGLAGDTSDNYPGVTKVGEKTALKLLKQFGTIENLYDNLDDLKPSKMKEHLIED 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 + A S+ L ++ D P+ I L L + N L F + ++F Sbjct: 239 RDAAFTSKTLATIKRDAPVEIGLADLKYDGKNITFLQEFYQKMKF 283 >gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus] Length = 878 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/463 (42%), Positives = 298/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 433 KGAKRAVPDEPV----LAEHLVRKAAAI---WALERPFLDELRRNEQDRLLVE------- 478 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 479 -LEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLG 537 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 538 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 595 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 596 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 655 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +NF I+ Sbjct: 656 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 715 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 716 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 775 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L ++LLQ+HDEL+ Sbjct: 776 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELI 835 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 836 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 874 Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 119/295 (40%), Positives = 177/295 (60%), Gaps = 11/295 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M+ + L L+DGSS YRAF+A PLL G+ NA+ GF ML K+L E +H Sbjct: 1 MRLKKKLVLIDGSSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEEPTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R + P L Q PL+R +A+ IPA E++ +EADDI Sbjct: 56 MLVAFDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 I T AE+EGF V +IS D+DL QL SP + D K+ DIE V +K+G+ Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPEAVREKYGLT 174 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PE++V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +E + + Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKETLRQ 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 + E A LS+KL +R D P+ + L+ ++ + + ++++ K L F + ++ + Sbjct: 235 HREMALLSKKLAAIRRDAPVELSLDDIVYQGEDREKVVALFKELGFQSFLEKMES 289 >gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855] gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855] Length = 926 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/515 (38%), Positives = 320/515 (62%), Gaps = 9/515 (1%) Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+GHN+KYD L+L ++G+ + G D M+ Y++ + +H++ +A+ L+Y I Sbjct: 415 KLGHNLKYDLLLLKQHGVEVGGTLFDTMVAHYLV-APEENHNLDDVARSVLNYKMVPIAD 473 Query: 523 SRKSSIPIDKISDSQVQ---EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 D + + +V+ +A E++++ +L L +L +L V ++ P++ V Sbjct: 474 LIGDETDRDSMREVEVETAAPYACEDADISYRLADELEAQLEDGNVLDVAHDIEFPLVHV 533 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 ++ ME TGI++D D+L ++ A + + L +EE +++L+GE+FN++S +QLG+ILF KL Sbjct: 534 LATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELAGEEFNINSTQQLGEILFEKLDL 593 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 P +KT TG+ T L++++ ++ I +L+WR K+KSTY DSL ++ T R+ Sbjct: 594 PVVSKTPTGKPSTKESVLQELST-EHEIPGLVLDWRSTYKLKSTYLDSLGELVHPETGRL 652 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 HT ++ T TGRL+S +PNLQNIPI+T++G++IRRAF+ L+SADY+QIELRILA Sbjct: 653 HTSFNQTRTATGRLSSSDPNLQNIPIRTEMGRQIRRAFVPKDGWALLSADYAQIELRILA 712 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 ++ + F+ DIH AA ++G++ E V+P+ R AK +N+ I YGISP+ LA Sbjct: 713 AMSGDDAMRATFQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPYGISPWGLAQ 772 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 ++R+P EA D IK+Y +PG+ + + + + GY ET+ GRR + +I+S S+ Sbjct: 773 RMRMPVDEAQDIIKQYRKSYPGVSQLLNELVEKAQDKGYAETLLGRRRYLPDIDSSNSNA 832 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER A+N PIQG+ AD+ + AM +H L AT+MLLQ+HDELVFEVP +E+ Sbjct: 833 RSAAERVAVNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFEVPPDELDA 892 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 A +I M A LP + VP+ V++ +NW E Sbjct: 893 AQTMIDDEMRDA-LPLDD--VPVTVDMDTGDNWLE 924 Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/296 (37%), Positives = 168/296 (56%), Gaps = 20/296 (6%) Query: 4 ENHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 ++ L+L+D S YRA Y + PL++ K G +A GF N L KL+++ E H Sbjct: 10 DSALYLIDAMSLAYRAHYIFISRPLINSK--GQNTSAAYGFTNSLLKLIEDHDIE----H 63 Query: 61 FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 AV+FD TFR E+Y DYKANR PE LL +P ++ + IP +E+ G EADD Sbjct: 64 AAVVFDEGEEDTFRKEMYDDYKANRDPPPEELLENIPYIKEIVEGLDIPVLEVPGVEADD 123 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK-------KW 172 +I AE + V I+S DKD QL+S +Y K K D + IK ++ Sbjct: 124 VIGALAKQAEADDADVVIVSPDKDFKQLLSDKVSIY---KPAKGDQDFEIKTGDTFRDEY 180 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 G+ P + V + AL GDS DN+PG+ GIG KTA LL+EY ++EN++ +A + K+ RE Sbjct: 181 GLDPAQFVDMLALMGDSSDNVPGVYGIGEKTAQKLLREYHSVENLIDHADDLSGKRAREG 240 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + E+AE ARLS++LV +RT++ + + L + + +L + + LEF +R+ Sbjct: 241 MQEHAEEARLSKRLVRIRTELDVGLDWHELQRRELDEEKLTAVFQELEFDSFGDRL 296 >gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52] gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52] Length = 876 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/463 (42%), Positives = 298/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 431 KGAKRAVPDEPV----LAEHLVRKAAAI---WALERPFLDELRRNEQDRLLVE------- 476 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 477 -LEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLGTVEQRIYELAGQEFNINSPKQLG 535 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 536 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 593 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 594 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 653 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +NF I+ Sbjct: 654 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 713 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 714 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 773 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L ++LLQ+HDEL+ Sbjct: 774 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELI 833 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 834 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 872 Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 118/289 (40%), Positives = 173/289 (59%), Gaps = 11/289 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS YRAF+A PLL G+ NA+ GF ML K+L E +H V FD Sbjct: 5 LVLIDGSSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEEPTHMLVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E + +YK R + P L Q PL+R +A+ IPA E++ +EADDII T Sbjct: 60 AGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGTLAA 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181 AE+EGF V +IS D+DL QL SP + D K+ DIE V +K+G+ PE++V Sbjct: 120 RAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVREKYGLTPEQIVD 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +E + ++ E A Sbjct: 179 LKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQHREMAL 238 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 LS+KL +R D P+ + L+ + + + ++++ K L F + ++ + Sbjct: 239 LSKKLAAIRRDAPVELSLDDIAYQGEDREKVVALFKELGFQSFLEKMES 287 >gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] Length = 930 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 209/541 (38%), Positives = 322/541 (59%), Gaps = 19/541 (3%) Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVL-DSGRSSH 503 TK++L L E KI HN K+D + L+++GI + + D + +++L ++ Sbjct: 382 TKDLLDELSPLLEGGP-KKIAHNAKFDYMALYKHGIRVSPLYFDTSIAAFLLNETSVGLK 440 Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 D+A+ T ++ K+ + ++S + +A ++++ +L+ +L +++ Sbjct: 441 DLAATRLGIQMTTIDSLIGKGKNQKTMLEVSVDECARYACADADMTFRLFTMLEKEIVER 500 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 KL ++ L+ P++ V++ ME+TG+ ID D LK +S ++ + + +E IY+++G +FNL Sbjct: 501 KLQDLFYTLEMPLVPVLADMEMTGVAIDADALKSLSTKLYEQIRDIESQIYEIAGYEFNL 560 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 SP+QL LF L KT G + T A LE ++ G +P+I IL +RQL+K+K T Sbjct: 561 KSPQQLSKFLFQDLGLKGIRKTSKG-YSTDAATLEALS-GQHPVIDLILSYRQLTKLKDT 618 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y D+LP +++ T R+HT +S S +TGRLAS +PNLQNIPI++ LG+++R+AF++ + Sbjct: 619 YVDALPLMVSRSTGRLHTNFSQTSAVTGRLASSDPNLQNIPIRSSLGKEVRKAFVAGSPE 678 Query: 744 K----------LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 K L+SADYSQIELR+LAH+ L + F +DIH + A+ +FGV IE V Sbjct: 679 KNNAIFDEPSVLLSADYSQIELRVLAHVTDEPKLKEAFSRDIDIHALTASRLFGVPIESV 738 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 MRR KTINF IIYG+S FRLA + + EA ++KRY +FP + Y E+ Sbjct: 739 DDNMRRMGKTINFGIIYGMSGFRLARDTGLEQREANLFVKRYMDQFPRVKAYFEQLIKEA 798 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET GRR + +I S R RAAIN PIQG AADI ++AMI VH +LE Sbjct: 799 EKKGYVETPLGRRRYLPDITSSNPQRREAARRAAINMPIQGMAADIIKQAMIDVHSALER 858 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 + KM+LQ+HDEL+FEV E ++ A+++IV M A +L VPL V + NW Sbjct: 859 EGIKAKMILQVHDELLFEVAESQLDRAAEVIVREMSTA----FDLSVPLVVEAEYGPNWG 914 Query: 974 E 974 E Sbjct: 915 E 915 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 104/305 (34%), Positives = 158/305 (51%), Gaps = 18/305 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+D S IYRA++A P G NAI GFCNML +++ +SIA F V Sbjct: 9 VVLIDAYSLIYRAYHALPSDLATSKGEKTNAIYGFCNMLVQVINRENPDSIAVAFDV--- 65 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR++ + +YKA R +P+ L Q+ VR AF IP E+ G+EADD+I + Sbjct: 66 --GKAFRHDEFVEYKAQRAPMPDDLQAQIGRVRQVIAAFDIPVYEVPGYEADDVIGSLAK 123 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +G V I++ DKD +QLVS P + V+ D+ V ++G P + Sbjct: 124 KLSSQGHQVVIVTGDKDFLQLVSDSVSVVLPARGRFSEVQVYTPDL--VRLQYGFDPRYI 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 V +AL GD+ DNIPG+PG+G KTA L+Q +G+L+NIL N IK ++ R I E+ Sbjct: 182 VDFKALMGDASDNIPGVPGVGEKTARSLIQTFGSLQNILENVDSIKPERIRNAIKEHQSQ 241 Query: 240 ARLSRKLVMLRTDVPITIP--LEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +L + TD+ + I + H D ++ + LEF L+ R+ ++ Sbjct: 242 LIQNLRLATIVTDIDVDIEPVISHAWAPDMQ--KVNEIFRELEFRSLMYRLPKYFEPQNT 299 Query: 298 NIEPV 302 + E V Sbjct: 300 SSEKV 304 >gi|330718752|ref|ZP_08313352.1| DNA polymerase I [Leuconostoc fallax KCTC 3537] Length = 896 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 200/512 (39%), Positives = 320/512 (62%), Gaps = 15/512 (2%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE---ILK 522 +N+K +++ R I +R D +L +Y+LD+ ++ ++A++AQK+ Y + + K Sbjct: 390 YNVKAQRVLFKRLDIELRNATFDFLLAAYLLDTTDNNAELATLAQKYDIYLQLDEDIYGK 449 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K S+P D + +V H ++ + QL + +L + L +Y+ ++ P+ V++ Sbjct: 450 GAKFSVPTD---EGRVLMHIAHKADTLNQLIEPVMVQLKEHEQLALYQDIELPLASVLAD 506 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME TGI++DQ+ L+++ + ++ +E+ IY+ +GE+FN++SPKQLG +LF K+ P Sbjct: 507 MEYTGIRVDQNQLQEMGESLDAQIVDVEKAIYEEAGEEFNINSPKQLGILLFEKMGLPVI 566 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 +TKTG + T + LE++ PI+ IL++RQL+K+KSTY D L + ++ ++HT Sbjct: 567 KRTKTG-YSTAVEVLEKL-ADQAPIVAYILQYRQLAKLKSTYIDGLLAVVYRQDSKIHTR 624 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761 Y T TGRL+S++PNLQNIP++T+ G++IR+AF+ S P ++ ADYSQIELR+LAH+ Sbjct: 625 YLQTLTQTGRLSSVDPNLQNIPMRTEAGRQIRKAFVPSEPNWQIFGADYSQIELRVLAHM 684 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQ 820 L + F N DIH A +FG+N + ++ RR AK +NF I+YGIS F L+ Sbjct: 685 TGDKNLQRAFLNDEDIHSETARAVFGLNDDAPITSLQRRAAKAVNFGIVYGISDFGLSNN 744 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I R+EA +I YF +FP +HE++E K + GYVET+ RR + +I++ + R Sbjct: 745 LGISRAEAKRFIDTYFEKFPQVHEWMENAKTLAHEQGYVETLAKRRRYLPDIHAKNFNRR 804 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 + ER A+N PIQGSAADI + AMI +++ L +H L +MLLQ+HDEL+FE P EI Sbjct: 805 SFAERTAMNTPIQGSAADIIKIAMIKMNQVLHEHHLQARMLLQVHDELIFEAPTSEIPEL 864 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ M+ A + L VPLKV + +NW Sbjct: 865 EEIVPQVMDSA----VALDVPLKVESRHGSNW 892 Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 104/293 (35%), Positives = 166/293 (56%), Gaps = 16/293 (5%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S YRAFYA L R HDGL NA+ F N + +++ + ++ +AV Sbjct: 6 LLLIDGNSLAYRAFYAMYKQLDRMVTHDGLHTNALVAFNNFMDQIV-----DPMSPDYAV 60 Query: 64 IF---DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 + D TFR E+Y +YK+ R K P L QLP +R G+ E G EADDI Sbjct: 61 VAWDADSGKSTFRGELYSEYKSGRAKTPTELAEQLPYMREMVAFHGLRNYEQHGLEADDI 120 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175 I T++ E G++VTI++ D+DL QL + + T K E+ E++ +K+ G+ Sbjct: 121 IGTFSREGEALGYSVTIVTGDRDLTQLATDNITVNVTKKGVTEIERFTPEYIAEKYNGLT 180 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++++ ++ALTGD+ DN PG+ IG KTA LL +Y +L+++ N ++K K +EN+++ Sbjct: 181 PQQIIEMKALTGDTSDNYPGVTKIGEKTALKLLAQYQDLDHLYANIDQMKASKMKENLIK 240 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + A SRKL + TD + +PL + RLI F + L+F + + ++ Sbjct: 241 DRDQAFCSRKLATILTDADMALPLAEFEYRGIDFDRLIPFYETLDFKQQLAKI 293 >gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270] gi|158446788|gb|EDP23783.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270] Length = 888 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 202/513 (39%), Positives = 318/513 (61%), Gaps = 10/513 (1%) Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL 521 IG++IK + + + + +ED+M++ Y++DS + ++DI ++ ++L+ KE+L Sbjct: 381 IGYDIKEELFFALKNNLEFKNYEDVMILEYLIDSNKGNYDILKVSNEFLNLEILDLKEML 440 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K+ ++ + + + +N I L+ + K L+ +YE ++KP++ V++ Sbjct: 441 GKGKNKKTFFELEEDIIFKFISQNVFAISALYDIFIEKAKENNLISLYENVEKPLVKVLA 500 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME TG+ +D++ + +++ E SK E+ +Y+L+GE FNL+SPKQLG ILF K+ P Sbjct: 501 DMEKTGVLVDRNKIIELNEEYSKLAYLYEQKVYELAGEVFNLNSPKQLGVILFEKIGLPV 560 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG + T + LE++ + I+ IL++R L+K+ STY D + +I RV T Sbjct: 561 VKKTKTG-YSTDVEVLEKL-SKKHEIVDYILKYRSLNKLISTYLDGILEYI-MDDGRVRT 617 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 + T TGRL+S++PNLQNIPI+++ G+ IR+ F++ K I ADYSQIELR+LAH+ Sbjct: 618 SFKQMITATGRLSSVDPNLQNIPIRSEEGKNIRKVFVADKNKVFIDADYSQIELRVLAHL 677 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 +K + + F+N LDIH A+E+FGV I +V+ RR AK +NF I+YGIS + L+ L Sbjct: 678 SKDSVMIDSFKNDLDIHYKTASEVFGVPINEVTDNQRRSAKAVNFGIVYGISDYGLSKDL 737 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I R+EA YI Y + +P I Y+E+ N +++G+V TI R+ + EINS +IR+ Sbjct: 738 NITRNEARQYIDGYLNTYPSIKSYMEEIVNKAKKDGFVTTILDRKRYIPEINSKNFNIRS 797 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER A+N PIQGSAADI + AMI V++ L+ K+ K++LQIHDEL+ E E E T Sbjct: 798 FGERIALNTPIQGSAADIIKLAMIKVYERLKIEKVNAKLILQIHDELIVECEESEKETVK 857 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I+ +SME L +PLKV+I NW E Sbjct: 858 KILKNSMENVY----KLDLPLKVDICEGRNWYE 886 Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 108/290 (37%), Positives = 167/290 (57%), Gaps = 10/290 (3%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 K + L+DGSS I+RAFYA L+ K DG+ VN + GF NM +K L+ +H Sbjct: 11 NKMKKILLIDGSSLIFRAFYAIRNLTTK-DGVFVNGVYGFLNMYYKALELIN----PTHI 65 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD + TFR+ + DYK R P + Q +++ + + +E+ +EADDII Sbjct: 66 FVAFDKGSKTFRHNEFADYKGTRDNAPNEITYQFGILKDLLSSMNVNYLELDEYEADDII 125 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177 T +A+KEGF V I + D+D +QLV +Y T K + ++ E +++++ + P+ Sbjct: 126 GTIAKLAQKEGFEVDIFTGDRDYLQLVDDNILVYLTKKGISEIKLMNTESILEEYDLSPK 185 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ ++AL GDS DNIPG+ G+G KTA L+QEYGNLEN+ N +K K +EN++ Sbjct: 186 QLIDVKALQGDSSDNIPGVKGVGEKTALKLIQEYGNLENLYENIDNLKG-KLKENLVNEK 244 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 + A LSR L + VPI +E ++D N + L+ LEF +IN+ Sbjct: 245 DKAYLSRYLGEIFLRVPIERNIEDFEIKDVNYNEYLKKLEKLEFNSIINK 294 >gi|312871738|ref|ZP_07731826.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a] gi|311092680|gb|EFQ51036.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a] Length = 883 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/532 (39%), Positives = 330/532 (62%), Gaps = 24/532 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 LKK E+++ K ++K + + L R I++ +DIML SY+ DS ++ DI +A Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLDITLSNVTDDIMLASYIADSENNARDIGVLANS 423 Query: 512 WL-SYTRK-EIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + SY + EI+ ++ S+ +D + H +V+ +L + P+L + + Sbjct: 424 YQESYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQV 478 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 H+Y+ ++ P+ ++++MEI GI++ L ++ ++ + L+ IY L+GEKFN++SP Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KLK KTKTG + T+ LE++ +PI+ +IL++RQ+SKI+STY + Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLKY-QSPIVDDILDYRQISKIQSTYIN 596 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L ++I + ++HT + T TGRL+S+EPNLQNIP+K + G++IR+AF+ P K+ Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTATGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802 L S DYSQ+ELR+LAH++ + + F+ DIH A +IFG+ N+++V+P MRRHAK Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF I+YGIS + LA L I R EA ++I YF ++P I +Y++ R+ GY ETI Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 RR +I++ +IR+ ER AIN+PIQGSAADI + AMI + LE KL TKM+L Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+F+VP EE+ ++ M++A L VPL + +NW E Sbjct: 834 QIHDELLFDVPSEELDLIRTLVPEIMQQAA----QLDVPLIADANWGHNWYE 881 Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 103/297 (34%), Positives = 163/297 (54%), Gaps = 13/297 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA K DGL NAI F NML LL+N + +H V Sbjct: 4 LLLIDGNSVAFRAFYALYKQLDKFKSPDGLHTNAIFTFKNMLDVLLKNIQ----PTHMLV 59 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD +TFRN++Y DYK R K P L QLP+++ GI + E+ +EADDI+ T Sbjct: 60 AFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDILGT 119 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEK 178 + GF VTI++ D+DL QL + T K+ D+E H+ + +G+ P++ Sbjct: 120 MAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVTPKQ 178 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + ++AL GD+ DN PG+ +G KTA+ L+ +YG++EN+ +++K K +E ++ Sbjct: 179 FIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIAQVKASKIKEYLIRDKN 238 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A L +KL + P+ + ++ L L+ +L SF + L F K ++ + + D Sbjct: 239 NAILGKKLATIDCTSPVDLKIDDLELQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295 >gi|306821558|ref|ZP_07455156.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550303|gb|EFM38296.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 883 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 202/524 (38%), Positives = 323/524 (61%), Gaps = 10/524 (1%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 +K E+E+ KIG++IK + L L Y IS+RG + D+ + Y+L +S+DI+ IA + Sbjct: 362 IKHILEDENIEKIGYDIKAEYLSLLPYDISLRGIKYDLKIAKYLLSPDNNSYDISEIAME 421 Query: 512 W-LSY--TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 + LS+ + +E K I+ + +V+E+ ++ +++ + ++ + ++ + Sbjct: 422 YGLSHLQSHEEFFGKGKKEKVINPFTKKEVEEYYMKVLDIVDSSYDIVMTAIRDSEMTKL 481 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 +E ++ P+I V+S ME G+ ID+ L+ E ++++L LE IY+L+GE+FN++SPKQ Sbjct: 482 FEDVEIPLITVLSDMEYIGVAIDKKELENQKIEFAQHILRLESEIYELAGEEFNINSPKQ 541 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LG ILF KL P KTKTG + T A LE++ + II I+ +RQ +K++STY + L Sbjct: 542 LGVILFEKLNLPPVKKTKTG-YSTDAAVLEEL-SDMHDIIGKIISYRQYTKLQSTYVEGL 599 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748 N IN T+R+H+ ++ TGR++S EPNLQNIP++ ++G+ +R+AFI+ L+ + Sbjct: 600 LNIINPNTERIHSSFNQTIAATGRISSTEPNLQNIPVRLEIGRNLRKAFIARQGCVLVDS 659 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELR+LAHI+ L Q F DIH A+E+FGV+I +V+ + R AK +NF I Sbjct: 660 DYSQIELRVLAHISDEEALIQAFSKDADIHTQTASEVFGVDISEVTKEQRGAAKAVNFGI 719 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS F L+ L I + +A YIK Y R+ I +Y++ F ++GYV TI GRR Sbjct: 720 VYGISDFGLSNNLGITKKKAGQYIKTYLDRYKNIEKYMQDVVAFGEEHGYVTTILGRRRS 779 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 ++ I+N+ +R A+N PIQGSAADI + AM+ V L+ L +K++LQ+HDEL Sbjct: 780 IPQLKQKNIMIKNLGKRLAMNTPIQGSAADIIKIAMVRVSNRLKRENLKSKLILQVHDEL 839 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + E +E ++ M KA +++V LKV+I V N+W Sbjct: 840 IIEATADEQDYIKALLQEEMSKAY----DMKVELKVDINVGNSW 879 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 109/301 (36%), Positives = 165/301 (54%), Gaps = 14/301 (4%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E L ++DG+S I RAFYA P L+ K +G+ NAI GF N+L+K++ E +H V Sbjct: 2 EKRLIIIDGNSLINRAFYAVPPLTDK-NGMHTNAIYGFANILFKIIS----EYSPTHMGV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A TFR+++Y DYK R +PE L QL ++ F I +E+ G+EADDII T Sbjct: 57 AFDLKAPTFRHKMYADYKGTRKGMPEELAEQLAPLKEMLGYFNITKMELAGYEADDIIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 + EKE II+ D+D QL S + T K E +D + ++ +GI P + Sbjct: 117 VSKHFEKEDIETLIITGDRDSFQLASDKIKILFTKKGVSELEIVDKQVMMNNYGITPTQF 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEYA 237 + L+AL GD+ DNI G+ GIG KT L++EY N+EN+ + IK K + EN Sbjct: 177 IDLKALMGDTSDNIKGVAGIGEKTGLKLIKEYKNIENLYEHIDEIKGSTKTKLEND---K 233 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E+A LS++L + ++P+ I + +L+D + +L F L+ ++ + D Sbjct: 234 ESAYLSKQLATININIPVEIESDEFLLKDFDNYKLNEFFIEHNMMSLVKKLKNFSNSDEQ 293 Query: 298 N 298 N Sbjct: 294 N 294 >gi|329929159|ref|ZP_08282945.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5] gi|328936836|gb|EGG33271.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5] Length = 886 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 208/563 (36%), Positives = 334/563 (59%), Gaps = 18/563 (3%) Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 D + I + L+ Q + L E ++ + + K G+++ L LH Sbjct: 333 DNPHHADVIGLALATEERQYFLPFDVLKSEEAEPVRAWLADSEIPKRGYDLHRIDLALHW 392 Query: 479 YGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKE---ILKSRKSSIP-IDK 532 GI+ G D+ L +Y+LD S+ ++ +A K+ L+Y + + K K +P +DK Sbjct: 393 QGIAFAGAAFDVHLAAYLLDPTESNQTLSGLASKYGLAYLQADEDVFGKGAKYKVPDVDK 452 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 +S EH + +L + +L ++L ++ L+ P+ +++ ME GI ++ Sbjct: 453 LS-----EHMARKCLAVSELVPIQEKELAANEMLPLFHDLEMPLSRILADMEKQGIAVNA 507 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 + LK++ E + L + IY+++G +FNL+SPKQLG+ILF KL+ P KTKTG + T Sbjct: 508 EDLKELGREFEGQIAKLVQEIYEIAGTEFNLNSPKQLGEILFVKLELPVIKKTKTG-YST 566 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A+ LE++ + I++ IL++R L+K++STY + L I+ T +VHT+Y TGR Sbjct: 567 DAEVLEKL-APYHDIVRLILQYRTLAKLQSTYVEGLLKEISSVTGKVHTYYRQTIAATGR 625 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 L+S PNLQNIPI+ + G+K+R+ F+ S P +++ADYSQIELR+LAHI+ L + F Sbjct: 626 LSSQYPNLQNIPIRLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAF 685 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + +DIH A ++FGV +++V MRR AK +NF I+YGIS + L+ L I R EAA + Sbjct: 686 VHDMDIHTKTAMDVFGVGMDEVDSNMRRSAKAVNFGIVYGISDYGLSQNLNITRKEAAAF 745 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I +YF F G+ Y++ +Q+GYV+T+ RR + EIN+ ++R+ ER A+N P Sbjct: 746 IDQYFEVFQGVRRYMDVIVKQAKQDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTP 805 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI + AM+ + K+L + +L ++MLLQ+HDELVFEVPE+E+ +++ M +A Sbjct: 806 IQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVMKELVPDVMSQA 865 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 + L VPLK + NW E Sbjct: 866 ----LKLSVPLKSEVSYGENWYE 884 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 113/320 (35%), Positives = 179/320 (55%), Gaps = 16/320 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG++ IYRAF+A P L+ G NA+ GF ML +L++ + +H V Sbjct: 2 DKLILIDGNNIIYRAFFAMPPLTNA-SGQQTNAVYGFTTMLLRLIEEHK----PTHMMVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + +YK R K P L Q PL++ + G+ EI G+EADDII T Sbjct: 57 FDAGKETFRHADFQEYKGGRQKTPPELSGQFPLLKELLKGLGVSQFEIGGYEADDIIGTI 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 T A++ G V ++S DKD++QL S T + V++ +IE+ + +++ + P+++ Sbjct: 117 TRQADEAGRKVMVVSGDKDMLQLASEHTTIA-MVRKGVTEIEYYGPEQIKERYNLTPDQI 175 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+ L GD+ DNIPG+PG+G KTA LL E+G++E ++ +K K +E I E+A++ Sbjct: 176 IDLKGLMGDASDNIPGVPGVGEKTALKLLHEFGSVEAVVSRTDELK-GKMKEKIEEHADS 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDA 296 A LS+KL + +VP+ L+ + N L LEF LI R+ + DA Sbjct: 235 AILSKKLATIFREVPLEQSLDEMAFTGLNEETAGPALAKLEFKSLIERLNLSTSGAAGDA 294 Query: 297 ANIEP-VVLDINTTENKGIA 315 A +P +D+ + GIA Sbjct: 295 AESKPEAKIDVTLVDATGIA 314 >gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] Length = 878 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 203/489 (41%), Positives = 296/489 (60%), Gaps = 32/489 (6%) Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 +D+ L YV D G SS+ + ++++ L V EN Sbjct: 419 DDVALAGYVADPGHSSYSLEDLSRRNLP----------------------GVLATPCEN- 455 Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 +LQL LR L ++ L +YE + P+ V++QME GI D++LL Q++ ++ + Sbjct: 456 --LLQLASKLRSLLAEQQQLKLYEEFELPLAPVLAQMEFAGITPDKELLLQLNEDMGHRI 513 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666 LE + +GE+FNL SPKQLG ILF +L+ P KTKTG + T A+ LE + G +P Sbjct: 514 AKLEALAQEQAGEEFNLKSPKQLGVILFERLQLPVIKKTKTG-YSTDAKVLEALE-GKHP 571 Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 +I ILE R+L+K++STY + L IN +T R+HT + T+TGRL+S +PNLQNIP + Sbjct: 572 LIATILEHRKLAKLQSTYLEGLQPLINPKTGRIHTHFQQTVTVTGRLSSTDPNLQNIPAR 631 Query: 727 TDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 T+ ++IRR F+ L+ S DYSQ+ELRILA IA+ L + F + DIH AAE+ Sbjct: 632 TEESRQIRRIFVPGAGYDLLMSCDYSQVELRILACIAQDELLLEAFRHGQDIHARTAAEV 691 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 FGV +++V+PQMR AK +NF I+YGIS F LA QL + R EAA YI YF R+ G+ +Y Sbjct: 692 FGVPLDEVTPQMRSRAKAVNFGIVYGISDFGLAKQLDVGRKEAAGYIASYFERYTGVKKY 751 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 +E R+ GYV T+ GRR + EI S ++R+ ER AIN PIQG+AADI ++AMI Sbjct: 752 MEDIVAEAREQGYVSTLMGRRRYLPEIRSSNFNLRSFAERTAINTPIQGTAADIMKKAMI 811 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 +V + L+ + +++LLQ+HDELV EV E+E +Q++ +ME A +L +PL + Sbjct: 812 AVQRELDKAQCKSRILLQVHDELVLEVTEDEKEQVAQLVRTAMEGAA----SLDIPLLAD 867 Query: 966 IKVSNNWQE 974 + +W E Sbjct: 868 VNCGRDWAE 876 Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 159/291 (54%), Gaps = 14/291 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + ++DGSS I+RAF+A P L+ + G+ A+ G CNML KLL + + AV Sbjct: 16 DKFLVIDGSSLIHRAFFALPPLTTRQ-GIHTGAVYGLCNMLLKLLDEVKPR----YMAVA 70 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+++Y +YKA R P L Q PL + GI +E+ +EADDII T+ Sbjct: 71 FDKSRKTFRSKLYAEYKAQRKPTPSELSEQFPLAMKVLECMGIRTLELDDYEADDIIGTF 130 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI------EHVIKKWGIPPEK 178 A E V I++ D+D +QL+ T ++ T K DI E G+ P++ Sbjct: 131 AVQAPPE-VDVIIVTGDRDELQLIDKRTKVFYT-KRGISDIQVFDEAEFAANYEGLQPKQ 188 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ L+ L GD+ DNIPG+PG+G KTA L++EYGN+E +L N ++ K + + + E Sbjct: 189 LIELKGLMGDTSDNIPGVPGVGPKTAMKLIKEYGNVETVLENIEKVSGKSLKTKLTDNKE 248 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 +A LS++L + T+ P+ ++ L+ + ++ LEF + R A Sbjct: 249 SALLSKQLATICTEAPVDTAVQTYELQPIK-EEARTLMQDLEFRNMYERFA 298 >gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426] gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426] Length = 878 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/463 (42%), Positives = 298/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 433 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 478 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 479 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 537 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 538 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 595 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 596 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 655 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +NF I+ Sbjct: 656 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 715 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 716 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 775 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L ++LLQ+HDEL+ Sbjct: 776 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELI 835 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 836 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 874 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 119/295 (40%), Positives = 177/295 (60%), Gaps = 11/295 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M+ + L L+DGSS YRAF+A PLL G+ NA+ GF ML K+L E +H Sbjct: 1 MRLKKKLVLIDGSSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEEPTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R + P L Q PL+R +A+ IPA E++ +EADDI Sbjct: 56 MLVAFDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 I T AE+EGF V +IS D+DL QL SP + D K+ DIE V +K+G+ Sbjct: 116 IGTLAARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVREKYGLT 174 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PE++V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +E + + Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQ 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 + E A LS+KL +R D P+ + L+ ++ + + ++++ K L F + ++ + Sbjct: 235 HREMALLSKKLAAIRRDAPVELSLDDIVYQGEDREKVVALFKELGFQSFLEKMES 289 >gi|148544471|ref|YP_001271841.1| DNA polymerase I [Lactobacillus reuteri DSM 20016] gi|184153836|ref|YP_001842177.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112] gi|227363101|ref|ZP_03847236.1| DNA polymerase I [Lactobacillus reuteri MM2-3] gi|325682793|ref|ZP_08162309.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A] gi|148531505|gb|ABQ83504.1| DNA polymerase I [Lactobacillus reuteri DSM 20016] gi|183225180|dbj|BAG25697.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112] gi|227071819|gb|EEI10107.1| DNA polymerase I [Lactobacillus reuteri MM2-3] gi|324977143|gb|EGC14094.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A] Length = 888 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 215/528 (40%), Positives = 320/528 (60%), Gaps = 18/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK +++ K N K + LHR GI + D++L SY+L++ +S+D+ +AQ+ Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHRLGIPLENINFDLLLASYLLNTNDNSNDLGQVAQE 425 Query: 512 WLSY----TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 Y T +E+ K K ++P D D H + I QL L KL K Sbjct: 426 H-GYDDVRTDEEVYGKGAKRAVPDD---DETFFSHLATKARAIEQLRKDLFAKLDENKQT 481 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 +Y ++ P+ V+++MEI G+ +D LK + +++++ L +E IY +GE+FN++S Sbjct: 482 PLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAGEEFNINST 541 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KLK P KTKTG +TA D+ + +PI++ ILE+RQ++K++STY Sbjct: 542 KQLGHILFEKLKLPVIKKTKTGY--STAVDVLEKLADKSPIVEQILEYRQIAKLQSTYIT 599 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745 L I+ Q++HT Y T TGRL+S++PNLQNIP++ G+ IR+AF+ S ++ Sbjct: 600 GLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQI 659 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTI 804 S+DYSQ+ELR+LAHI L + F+N DIH A IF + + ++ MRR AK + Sbjct: 660 FSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAV 719 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + LA ++ + R+EA ++I+ YFH FPG+ +YI T F ++NGYVETI Sbjct: 720 NFGIVYGISDYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITH 779 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I++ + R+ ER A+N PIQGSAADI + AMI + LE L KM+LQI Sbjct: 780 RRRYLPDIHAKSFNKRSFAERTAMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMILQI 839 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDELVFE P+EEI S+++ M+ A + L VPLKV+ K + W Sbjct: 840 HDELVFEAPKEEIPVLSELVPKVMDSA----VKLDVPLKVDSKYGDTW 883 Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 113/314 (35%), Positives = 168/314 (53%), Gaps = 13/314 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S ++RAF+A K DGL AI GF ML +LQN + ++ V Sbjct: 5 LLLIDGNSIVFRAFFAMHNQMDKFTNKDGLHTAAIYGFKLMLDHVLQNFKPDAAL----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y DYK R K P L Q+P VR + G+ + E+ +EADDII T Sbjct: 61 AFDAGKVTFRTKMYDDYKGGRNKTPNELTEQIPYVRELIKDSGLHSYELANYEADDIIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179 A+ G+ I++ D+DL QL S T + T K E HV +K GI P ++ Sbjct: 121 LAKQADDAGYKTLIVTGDRDLTQLASENTTVAVTHKGVTDTEHYTPAHVEEKLGITPRQI 180 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GDS DN PG+ IG KTA L++++G++E + + +K+ K +E+++E E Sbjct: 181 IDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVEELYDHIDDLKKSKMKEHLIEDEEV 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR--VATTYDCDAA 297 AR + L + D PI I L+ L + LI F K + F + + V T + D A Sbjct: 241 ARQCKTLATILQDAPIKIGLDDLQYQGPQTDDLIKFYKEMGFKSFLKKMDVDGTGEEDEA 300 Query: 298 NIEPVVLDINTTEN 311 I P+ + T +N Sbjct: 301 EIAPIDYTVLTKDN 314 >gi|299535474|ref|ZP_07048796.1| DNA polymerase I [Lysinibacillus fusiformis ZC1] gi|298729235|gb|EFI69788.1| DNA polymerase I [Lysinibacillus fusiformis ZC1] Length = 875 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 215/536 (40%), Positives = 327/536 (61%), Gaps = 32/536 (5%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L+++ E+ +K + K + L R GI + G + D++L SY+ + S DIA++A++ Sbjct: 356 LRRWLEDATKIKYMSDSKAAQASLKRAGIQLAGVDFDLLLASYINNPALSGDDIATLARE 415 Query: 512 WLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 Y + K K +IP Q+ +H S +W L +PKL E LL Sbjct: 416 LGYYDVQADEAVYGKGAKRAIP----DLDQLAQHV---SRKAFAVWSL-QPKL--EALLK 465 Query: 568 ------VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 +Y+ L+ P+ ++ +ME GI +++ L+++ E++ L+ +E+ IY +GE F Sbjct: 466 DNEQFDLYKNLELPLAGILGEMESEGITVNRATLEKMGQELNDKLVVIEQEIYAEAGETF 525 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 N++SPKQLG ILF KL P KTKTG + T A LE++ ++ II++IL +RQL K++ Sbjct: 526 NINSPKQLGVILFDKLGLPVIKKTKTG-YSTAADVLEKLQS-EHAIIEHILLYRQLGKLQ 583 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 STY + L I++ +VHT + A T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P Sbjct: 584 STYIEGLLKEIHESNSKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFV--P 641 Query: 742 TKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 +K+ L SADYSQIELR+LAH+++ L + F +D+H A ++F V+ ++V MR Sbjct: 642 SKEDWILFSADYSQIELRVLAHMSEDQNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMR 701 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 R AK +NF I+YGIS + L+ L I R EAA++I++YF FPG+ +Y++ + NGY Sbjct: 702 RAAKAVNFGIVYGISDYGLSQNLDITRKEAANFIEKYFASFPGVKQYMDDIVQNAKFNGY 761 Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 V TI RR + +I S ++R+ ER A+N PIQGSAADI ++AMI + L+ K+ Sbjct: 762 VTTILNRRRYLPDITSSNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMDARLKKEKMQA 821 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 K+LLQ+HDEL+FE P+EEI +I+ ME A I L VPLKV+ + W E Sbjct: 822 KLLLQVHDELIFEAPKEEIALLEKIVPEVMENA----IELAVPLKVDFNHGSTWYE 873 Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 113/294 (38%), Positives = 164/294 (55%), Gaps = 16/294 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L L+DG+S YRAF+A PLL+ G+ NA+ GF ML ++L+ + I Sbjct: 1 MTKEK-LLLLDGNSLAYRAFFALPLLTNDS-GIHTNAVYGFTTMLQRILEEEQPTKIL-- 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R K P L Q P +R A+GI E + +EADDI Sbjct: 57 --VAFDAGKTTFRHETFTEYKGGRQKTPPELSEQFPYLRKLIDAYGIKRYEQELYEADDI 114 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T A + V I+S D+DL QL + +Y T K EK + +K+G+ P Sbjct: 115 IGTLAKEASSQDMDVIIVSGDRDLTQLATEQVTVYITKKGITEIEKNTPAFIAEKYGLTP 174 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ ++ L GDS DNIPG+PG+G KTA LL+E+G++E + +K K +E ++ Sbjct: 175 LQIIDMKGLMGDSSDNIPGVPGVGEKTAVKLLKEHGSVEALYEAMDTLKASKMKEKLVAN 234 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR---LISFLKALEFTKLINR 287 E A +S+KL + TD PITI L L NGP+ LI+ + L F L+++ Sbjct: 235 EEQAIMSKKLATIYTDAPITISLADLA---YNGPKEDELINVWRELGFKSLLDK 285 >gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8] gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8] Length = 949 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 198/515 (38%), Positives = 319/515 (61%), Gaps = 9/515 (1%) Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+GHN+KYD L+L ++G+ + G D M+ Y++ + +H++ +A+ L+Y I Sbjct: 438 KLGHNLKYDLLLLKQHGVEVGGTLFDTMVAHYLV-APEENHNLDDVARSVLNYKMVPIAD 496 Query: 523 SRKSSIPIDKISDSQVQ---EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 D + + V+ +A E++++ +L L +L +L V ++ P++ V Sbjct: 497 LIGDETDRDSMREVDVETAAPYACEDADISYRLADELEAQLEDGNVLDVAHDIEFPLVHV 556 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 ++ ME TGI++D D+L ++ A + + L +EE +++L+GE+FN++S +QLG+ILF KL Sbjct: 557 LATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELAGEEFNINSTQQLGEILFEKLDL 616 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 P +KT TG+ T L++++ ++ I +L+WR K+KSTY DSL ++ T R+ Sbjct: 617 PVVSKTPTGKPSTKESVLQELST-EHEIPGLVLDWRSTYKLKSTYLDSLGELVHPETGRL 675 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 HT ++ T TGRL+S +PNLQNIPI+T++G++IRRAF+ L+SADY+QIELRILA Sbjct: 676 HTSFNQTRTATGRLSSSDPNLQNIPIRTEMGRQIRRAFVPKDGWALLSADYAQIELRILA 735 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 ++ + F+ DIH AA ++G++ E V+P+ R AK +N+ I YGISP+ LA Sbjct: 736 AMSGDDAMRATFQEGGDIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPYGISPWGLAQ 795 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 ++R+P EA D IK+Y +PG+ + + + + GY ET+ GRR + +I+S S+ Sbjct: 796 RMRMPVDEAQDIIKQYRKSYPGVSQLLNELVEKAQDKGYAETLLGRRRYLPDIDSSNSNA 855 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER A+N PIQG+ AD+ + AM +H L AT+MLLQ+HDELVFEVP +E+ Sbjct: 856 RSAAERVAVNMPIQGTQADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFEVPPDELDA 915 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 A +I M A LP + VP+ V++ +NW E Sbjct: 916 AQTMIDDEMRDA-LPLDD--VPVTVDMDTGDNWLE 947 Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 113/296 (38%), Positives = 168/296 (56%), Gaps = 20/296 (6%) Query: 4 ENHLFLVDGSSFIYRAFY---ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +N L+L+D S YRA Y + PL++ K G +A GF N L KL+++ E H Sbjct: 33 DNALYLIDAMSLAYRAHYIFISRPLINSK--GQNTSAAYGFTNSLLKLIEDHDIE----H 86 Query: 61 FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 AV+FD TFR E+Y DYKANR PE LL +P ++ + IP +E+ G EADD Sbjct: 87 AAVVFDEGEEDTFRKEMYDDYKANRDPPPEELLENIPYIKEIVEGLDIPVLEVPGVEADD 146 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIK-------KW 172 +I AE + V I+S DKD QL+S +Y K K D + IK ++ Sbjct: 147 VIGALAKQAEADDADVVIVSPDKDFKQLLSDKVSIY---KPAKGDQDFEIKTRDTFRDEY 203 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 G+ P + V + AL GDS DN+PG+ GIG KTA LL+EY ++EN++ +A + K+ RE Sbjct: 204 GLDPAQFVDMLALMGDSSDNVPGVYGIGEKTAQKLLREYHSVENLIDHADDLSGKRAREG 263 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + E+AE ARLS++LV +RT++ + + L + + +L + + LEF +R+ Sbjct: 264 MQEHAEEARLSKRLVRIRTELDVGLDWHELQRRELDEEKLTAVFQELEFDSFGDRL 319 >gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 875 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 214/493 (43%), Positives = 300/493 (60%), Gaps = 35/493 (7%) Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 ED+ LM Y L +G S ++ A K ++ ++ IE++ Sbjct: 411 EDLELMQYALSAGLSQKNLFEEALK-----------------------ETLIENIIIESA 447 Query: 547 NVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 +++ ++ L + I+E K +Y +D P+ ++ +ME GI++D + LKQ+SAE Sbjct: 448 KIVIN-FISLYKQTILELKDNKAFRLYSDIDLPICFILDKMEKVGIKVDANYLKQLSAEF 506 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQIN 661 +L LEE I+ LSG KFN+ SPKQLG+ILF K++ P G K + T A+ LE+++ Sbjct: 507 GAEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQLPFGKVSAKASSYSTGAEILEKLS 566 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 I +L WRQL+K+K+TY DSLP I+ T+RVHT + ST TGRL+S EPNLQ Sbjct: 567 EHGYNIANLLLRWRQLTKLKNTYTDSLPKQIDNITKRVHTTFLQTSTTTGRLSSQEPNLQ 626 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 N+PI++ G KIR+AFI+ KLISADYSQIELRIL+HIA I L Q F N DIH Sbjct: 627 NVPIRSSEGNKIRQAFIAEKGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQT 686 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A +IF + +++ + RR AK INF IIYGIS F LA QL + +A++YIK+YF + G Sbjct: 687 ACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGKASEYIKKYFAEYKG 746 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + EY+E+TK F NGYV FGR+ I+ K ++ ERAAINAPIQG+ ADI + Sbjct: 747 VQEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNADIIK 804 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI++ + +E KL T+++LQIHDEL+FE P EE+ II ME + N+ VP Sbjct: 805 IAMINLDQEIEKRKLKTRLVLQIHDELLFEAPVEEVEIIIPIIKKIMENST----NIDVP 860 Query: 962 LKVNIKVSNNWQE 974 + I+ NNW E Sbjct: 861 IITEIRAGNNWME 873 Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/321 (40%), Positives = 185/321 (57%), Gaps = 8/321 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M ++N L L+DG F++RA+YA PL S K + PV A+ GF +ML KLL + + + Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYAQQPLTSPKDE--PVGALYGFTSMLLKLLSDFKPK---- 54 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD FR+ IYP+YKANRP PE L+ QLPLVR + P +E G+EADD Sbjct: 55 HVAVVFDSGGENFRHHIYPEYKANRPPPPEDLIVQLPLVRDVASSLNFPILEKNGYEADD 114 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IIAT+ G V IIS+DKDL+QL+S +YD +K + I E V+KK+G +K+ Sbjct: 115 IIATFATKTVMLGEEVIIISSDKDLLQLMSENIKIYDPLKGKYITEEDVVKKFGTTSDKL 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GD DNIPG+P IG KTA+ L+ ++G++ENI + +I K+RE + E Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQISSIKQRETLQNSKEA 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A +S +L L ++V + L +L N +L FL+ F L R +D N Sbjct: 235 ALISWQLTGLDSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFKSLYKRAENLFDI-KIND 293 Query: 300 EPVVLDINTTENKGIAIETEI 320 + D TE K I+ +E+ Sbjct: 294 HKEIADNKVTEAKEISNASEL 314 >gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] Length = 882 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 206/508 (40%), Positives = 314/508 (61%), Gaps = 24/508 (4%) Query: 474 LVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL-------KSRKS 526 L H + I F D+ L SY+L++ S+ + SIA + Y + +L K K Sbjct: 386 LAWHDFAIKGISF-DVYLASYLLNAAESNPTLDSIAAQ---YAQTRVLSDEEVYGKGAKR 441 Query: 527 SIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 +P +D +S EH + I Q +LR +L ++ + L+ P+ V++ ME Sbjct: 442 LVPEMDVLS-----EHVAHKAAAIWQSVPVLREQLAENEMEKLLGELEAPLSMVLALMEK 496 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 G++++ + L Q+ ++ K L L + IY+L+G FN++SPKQLG+ILF +L P KT Sbjct: 497 QGVKVNSERLVQMGEDLDKKLAGLTDQIYELAGGAFNINSPKQLGEILFDRLSLPVLKKT 556 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTG T+A LE++ +PII IL +RQL K++STY + L I+ +T +VHT Y+ Sbjct: 557 KTGP-STSADVLEKL-APYHPIIDAILTFRQLGKLRSTYIEGLTKEIHTKTSKVHTLYNQ 614 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKI 764 A+T TGRL+S +PNLQNIPI+ + G+KIR AFI S +++ADYSQIELRILAHI++ Sbjct: 615 ATTATGRLSSTDPNLQNIPIRMEEGRKIREAFIPSEDGWYMLAADYSQIELRILAHISQD 674 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L F+ +DIH A ++FGV+ E+V+ MRR AK +NF I+YGIS + L+ L I Sbjct: 675 ENLIDAFQKGMDIHTRTAMDVFGVSEEEVTSLMRRQAKAVNFGIVYGISDYGLSQNLNIT 734 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R EA D+I+RYF F G+ ++++ + +G+V T+ RR + +I S ++R+ E Sbjct: 735 RKEAGDFIERYFDVFSGVKRWMDEIVQQAKADGHVTTLLNRRRYLPDIRSSNFNLRSFAE 794 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R A+N PIQG+AAD+ + AMI + ++LE+ LA++MLLQ+HDELVFEVP+ E+ +++ Sbjct: 795 RTAMNTPIQGTAADVIKLAMIRMQEALEEKGLASRMLLQVHDELVFEVPDNELEVMRKLV 854 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972 ME A ++L VPLKV++ W Sbjct: 855 PEVMESA----LSLDVPLKVDVSDGRTW 878 Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 117/316 (37%), Positives = 178/316 (56%), Gaps = 12/316 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 +H L+DG+S RAFYA PLLS GL NA+ GF ML K+L+ + +H V Sbjct: 2 SHFVLIDGNSVANRAFYALPLLSTSA-GLHTNAVLGFTTMLLKVLEEMK----PTHIMVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD V FR+ Y +YK R K P L Q PL+R AF I E++G+EADDII T Sbjct: 57 FDAGKVVFRHSEYAEYKGGRSKTPPELSEQFPLIRELLDAFSIKRFELEGYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 T A+++ + T+I+ DKD++QLVS + T K E E + +K+G+ P +++ Sbjct: 117 TKQADEQAWKTTVITGDKDMLQLVSEHVSVALTRKGVSEIEMYTPEEIHEKYGLKPLQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+ L GDS DNIPG+PG+G KTA LL EYG++E +L N ++ KK +EN+ E + A Sbjct: 177 DLKGLMGDSSDNIPGVPGVGEKTALKLLHEYGSVEQVLENIDKVSGKKLQENLRENVDKA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY---DCDAA 297 +S+ L + + P+ + ++ E +G + F K +EF L++++ A Sbjct: 237 NMSKALATILREAPVELDVQETGFEGYDGLPVSEFFKKMEFKSLLSKIKVAQPEGGSGQA 296 Query: 298 NIEPVVLDINTTENKG 313 + +P ++ + ENK Sbjct: 297 DAKPFSFEMISEENKA 312 >gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair In Complex With Fragment Dna Polymerase I From Bacillus Stearothermophilus Length = 580 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 195/463 (42%), Positives = 298/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WALERPFLDELRRNEQDRLLVE------- 180 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLG 239 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P K+KTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 240 VILFEKLQLPVLKKSKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +NF I+ Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 417 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L ++LLQ+HDEL+ Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELI 537 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576 >gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)] Length = 876 Score = 370 bits (949), Expect = e-99, Method: Compositional matrix adjust. Identities = 196/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 431 KGAKRAVPDEPV----LAEHLVRKAAAI---WALERPFLDELRRNEQDRLLVE------- 476 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 477 -LEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLG 535 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 536 VILFEKLQLPILKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 593 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 594 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 653 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +NF I+ Sbjct: 654 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 713 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 714 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 773 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L ++LLQ+HDEL+ Sbjct: 774 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDELI 833 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ W Sbjct: 834 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGPTW 872 Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 118/291 (40%), Positives = 174/291 (59%), Gaps = 11/291 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L E +H V Sbjct: 3 NKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEEPTHMLVA 57 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E + +YK R + P L Q PL+R +A+ IPA E++ +EADDII T Sbjct: 58 FDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGTL 117 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKM 179 AE+EGF V +IS D+DL QL SP + D K+ DIE V +K+G+ PE++ Sbjct: 118 AARAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPETVREKYGLTPEQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +E + ++ E Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQHREM 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 A LS+KL +R D P+ + L+ + + + ++++ K L F + ++ + Sbjct: 237 ALLSKKLAAIRRDAPVELSLDDIAYQGEDREKVVALFKELGFQSFLEKMES 287 >gi|58337813|ref|YP_194398.1| DNA polymerase I [Lactobacillus acidophilus NCFM] gi|227904462|ref|ZP_04022267.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796] gi|58255130|gb|AAV43367.1| DNA polymerase I [Lactobacillus acidophilus NCFM] gi|227867837|gb|EEJ75258.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796] Length = 886 Score = 369 bits (948), Expect = e-99, Method: Compositional matrix adjust. Identities = 212/531 (39%), Positives = 330/531 (62%), Gaps = 26/531 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK EN K ++K + LHR + + G D++L SY++++ ++S+D+ IA Sbjct: 367 LKDILENRKIQKDVFDLKRMTVGLHRLDVIVEGLNYDMLLASYLVNNEKNSNDLGEIAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K +K +IP DK + +H VI +L +P+L+ + H Sbjct: 427 YDEYSIKTDLEVYGKGKKQAIPEDK----EFFKHLAAKVCVIEKL----KPELLKQLKEH 478 Query: 568 ----VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 ++E ++ P V+++MEI GI+++ L ++ E + L LE+ IY +GE+FNL Sbjct: 479 EQDDLFETIEIPTARVLAKMEINGIKVEASTLIELQNEFAVKLKELEDKIYKQAGEEFNL 538 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 +SPKQLG ILF KL P KTKTG + T+ + L+Q+ +PI+ IL++RQ++KI+ST Sbjct: 539 NSPKQLGHILFEKLNLPVLKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQST 596 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPT 742 Y L + I +R RVHT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P Sbjct: 597 YVKGLLDVI-QRDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPD 655 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHA 801 + S DYSQ+ELR+LAH++ + + F+ DIH A IF ++ ++V+P MRRHA Sbjct: 656 GYIFSCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHAHTAMRIFHLDSPDEVTPLMRRHA 715 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +NF I+YGIS + L+ L I R A ++I YF ++P I +Y++K R+ GY ET Sbjct: 716 KAVNFGIVYGISDYGLSKNLGISRKRAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAET 775 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 I RR + +I++ K ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TKM+ Sbjct: 776 IMHRRRYLPDIHAKKFTVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMV 835 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +Q+HDEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 836 IQVHDELIFDVPKDELETIKKIVPEIMQSA----VKLDVPLIADSGWGHNW 882 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 116/312 (37%), Positives = 172/312 (55%), Gaps = 20/312 (6%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L R DGL NAI F NML +L K+ ++ V Sbjct: 6 LLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIL----KQVDPTNILV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR +Y DYK R K P LL Q+P++R GI + E++ +EADDII T Sbjct: 62 AFDAGKVTFRTAMYKDYKGGRQKTPSELLEQMPVIREMLTDLGITSYELKNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179 + + E G+ VT+++ D+DL QL S T + T E EH+ + GI P + Sbjct: 122 LSKMGEDAGYEVTVVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPEHMKEVNGITPTEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DN PG+ GIG KTA+ L+Q+YG++EN+ + +K+ KR+E ++ + Sbjct: 182 IDMKALMGDNSDNYPGVEGIGPKTASNLIQKYGSVENLYDHIDDLKKSKRKERLIRDKDK 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A L++KL + + P+T+ LE I +D N +L + L F K + + N+ Sbjct: 242 AFLAKKLAAIDRESPVTVTLEDTIKKDPNYEKLRDLYERLGFRKFLAEL---------NL 292 Query: 300 EPVVLDINTTEN 311 E D TEN Sbjct: 293 ETAGEDSGDTEN 304 >gi|332981757|ref|YP_004463198.1| DNA polymerase I [Mahella australiensis 50-1 BON] gi|332699435|gb|AEE96376.1| DNA polymerase I [Mahella australiensis 50-1 BON] Length = 850 Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 186/499 (37%), Positives = 317/499 (63%), Gaps = 31/499 (6%) Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534 +++ I+++G + D M+ +Y+LD +S++DI + +++L Sbjct: 377 MNKSHINVKGIDFDAMIAAYLLDPSQSNYDIKRLVKQYL--------------------- 415 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 ++ + A ++ + +L ++ P++ ++ ++ ++ P+ V++ MEI G +D + Sbjct: 416 --EIDDDAASHAGYLWRLMNIMLPQIKENEMNALFYDIEMPLTRVLADMEINGFTVDVQM 473 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 LK+++ + + + L + IY L+GE+FN++SPKQLG ILF KLK P G KTKTG + T Sbjct: 474 LKELADDFERMIDGLTKEIYALAGEEFNINSPKQLGAILFEKLKLPVGKKTKTG-YSTDI 532 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 + L+Q+ + I+ I+++RQL+K+KSTY D L N + T ++H+ ++ T+TGR++ Sbjct: 533 EVLKQLQL-QHDIVPKIIDYRQLTKLKSTYIDGLMNMADPITHKIHSKFNQTVTVTGRIS 591 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 S EPNLQNIP+KT+LG +IR+AF+ S L+ ADYSQIELR+LAH+++ + F Sbjct: 592 STEPNLQNIPVKTELGHQIRKAFVPSSSDYLLLDADYSQIELRVLAHMSQDQNMIDAFLK 651 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIH A+E+FG+ +E+V+P MR AK +NF I+YGIS F LA + I RSEA YI+ Sbjct: 652 GQDIHARTASEVFGIPLEQVTPLMRSRAKAVNFGIVYGISDFGLARNIGISRSEAKQYIE 711 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 +YF R+ G+ ++++T F +++GYV T+F RR + E+ S ++R+ ERAA+N PIQ Sbjct: 712 QYFARYNGVRRFMDETIQFAKKHGYVTTMFKRRRYLPELASSNRTVRSFGERAAMNTPIQ 771 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AADI ++AM+ ++ +L++++ +K++LQ+HDEL+ EV +E+ ++ ME Sbjct: 772 GTAADIIKKAMVDIYNALKENEYRSKLILQVHDELIIEVHRDEVDEIRDLVKDKMEGV-- 829 Query: 954 PKINLRVPLKVNIKVSNNW 972 + + VPL +I V NW Sbjct: 830 --VKMDVPLVADIHVGENW 846 Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 182/309 (58%), Gaps = 15/309 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + + L+DG+S + RAFYA P+L+ +G N + GF ML+K+++ + +H AV Sbjct: 3 DKIMLIDGNSLLNRAFYALPMLTNA-EGQYTNGVYGFLTMLYKVMEQEK----PTHIAVA 57 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD A TFR+E Y YKA R +P+ + QLP+++ A I E+ G+EADDI+ T Sbjct: 58 FDRKAPTFRHEQYDGYKAKRTGMPDEMASQLPVLKEVLTAMNIRIFEMDGYEADDILGTL 117 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 +A ++G V +++ D+D +QLV P + T + E D + + +++GI PE+++ Sbjct: 118 ANMAHQKGMEVVLVTGDRDALQLVKPDVKVIITKRGITDVEVCDEQAITQRYGIKPEQLI 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++ L GD+ DNIPG+PGIG KTA L++++G+LE++L + + K ++ + EY E A Sbjct: 178 DVKGLMGDASDNIPGVPGIGEKTALRLIKQFGSLESVLEHIDDVSGDKLKKLLTEYREQA 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKLINRVATTYDCDAA 297 +S++L ++ VPI L+ C GP +L + L+F L++++ D + A Sbjct: 238 IMSKQLGAIQCCVPIDDDLDKC---RCKGPDAVKLKEIYQRLDFKSLLSKIPQNNDEEFA 294 Query: 298 NIEPVVLDI 306 + +P+ D+ Sbjct: 295 DKDPIGSDV 303 >gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC 43243] gi|217992916|gb|EEC58916.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC 43243] Length = 879 Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 194/490 (39%), Positives = 307/490 (62%), Gaps = 11/490 (2%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIE 544 D L +Y+L+ + S+ +A+ +L+ R E L R S + ++ A Sbjct: 396 DAGLGAYLLNPLKESYSYDELARDYLNMLLPNRNE-LTGRMSYAEASMVKSEELARLACM 454 Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 + + W ++ KL ++ H+++ ++ P++ V+ ME GI +D LK+ +++ Sbjct: 455 EAYCVRHAWNVISVKLDEVQMKHLFDDIEMPLVFVLYDMECEGIMVDSKGLKEYGDKLAT 514 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664 + LE IY+L+G KFN++SPKQLG +LF +K PSG KTK+G + T A LE++ + Sbjct: 515 RITELENTIYELAGTKFNINSPKQLGTVLFEDMKLPSGKKTKSG-YSTAADVLEKL-APE 572 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 P++ ILE+RQL+K+KSTYAD L +I R+H ++ T TGR++S EPNLQNIP Sbjct: 573 YPVVAKILEYRQLTKLKSTYADGLAVYI-LEDGRIHGHFNQTITATGRISSTEPNLQNIP 631 Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 ++ ++G++IR+ F+ P + ADYSQIELRILAH+++ L + + DIH + A++ Sbjct: 632 VRMEIGRQIRKVFVPKPGCVFLDADYSQIELRILAHMSQDDKLIAAYNTAQDIHAITASQ 691 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +F V +++V+ R +AK +NF IIYGIS F L+ L I R EA++YI++YF +P I E Sbjct: 692 VFHVPLDEVTRTQRSNAKAVNFGIIYGISSFGLSQDLSISRKEASEYIEQYFATYPHIKE 751 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 +I+ ++NGY T+FGRR E+NS R ER A+N+PIQGSAADI + AM Sbjct: 752 FIDGLVASAKKNGYSTTMFGRRRPVPELNSSNFMQRQFGERIAMNSPIQGSAADIIKIAM 811 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 I+V ++L+D+ L +KM+LQ+HDEL+ E E+E+ QI++ +M A +LRVPL+V Sbjct: 812 INVSRALKDNNLKSKMILQVHDELLIETYEDEVDAVRQILIDNMTNAA----SLRVPLEV 867 Query: 965 NIKVSNNWQE 974 ++K ++W E Sbjct: 868 DVKEGHDWLE 877 Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 166/308 (53%), Gaps = 21/308 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG S + RAFY P L+ + + NAI GF N+++K++ + E H V FD Sbjct: 4 LVLIDGHSILNRAFYGVPDLTNAQE-VHTNAIYGFLNIMFKIIDEEKPE----HLIVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++++ +YK R +PE L Q+PL++ +A GI ++ +G+EADDI+ T Sbjct: 59 MSAPTFRHKMFAEYKGTRKPMPEELRQQVPLIKEVLEAMGIEIVQKEGYEADDILGTIAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTT--CLYDTVKEEKIDIEHVIKKWGIPPE 177 +EK G V+I+S D+D++Q+ + P T + + D+E + +G+ P Sbjct: 119 HSEKNGLDVSIVSGDRDILQIATEHIMIRIPKTKKGVTEIENYNACDVEAL---YGVTPA 175 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 + + ++AL GDS DNIPG PGIG KTA ++Q++G++EN + + + R ++ + Sbjct: 176 EFIDMKALMGDSSDNIPGAPGIGEKTAGAIIQKFGSVENAYNHIDEVTPNRARNSLADNY 235 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + LS+KL + D P+ ++ L++ + K F L+ + +D Sbjct: 236 DQVLLSKKLATIDIDAPVEYDVDSATLDNMFSDKAYEMFKRYNFKSLLKK----FDAATT 291 Query: 298 NIEPVVLD 305 EP + D Sbjct: 292 TREPEIFD 299 >gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831] gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831] Length = 880 Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 207/528 (39%), Positives = 318/528 (60%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 K + E+ KI + K K+ L R I+M+G D +L SY+L+ ++HDI +IA + Sbjct: 361 FKAWAEDPQKHKIVFDAKRTKVALLRNNINMQGIIFDSLLASYLLNPAENNHDIPAIANR 420 Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + + + K K +P + + EH + + ++ L+ + +L + Sbjct: 421 KSRSDVQFDEEVFGKGAKQKVPEADV----LNEHVVRKTQLLFDLYPEMEEELGNNEQYE 476 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + + L+ P+ +++++E G+Q+D D LK + ++ + L +LE+ +Y+L+GE FNL+SPK Sbjct: 477 LLKELEMPLALILAEVEHYGVQVDIDKLKDMGEDLKERLSTLEQEVYELAGETFNLNSPK 536 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T A LEQ+ ++ II +L +RQL K++STY + Sbjct: 537 QLGPILFEKLGLPVIKKTKTG-YSTAADVLEQLE-NEHDIIPKLLMYRQLGKLQSTYIEG 594 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L + K T R+HT Y+ A T TGRL+S+EPNLQNIPI+ + G+KIR+AF+ P+K Sbjct: 595 LLKVVRKDTSRIHTRYNQALTQTGRLSSIEPNLQNIPIRLEEGRKIRQAFV--PSKDNWI 652 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIA L + F+ DIH A ++F V ++V+ MRR AK + Sbjct: 653 MFAADYSQIELRVLAHIAGDEKLIKAFKEDTDIHTQTAMDVFHVESDEVTSNMRRQAKAV 712 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R EA +I+RYF+ +PG+ Y+++ + G+V TI Sbjct: 713 NFGIVYGISDYGLSQNLGITRKEAKKFIERYFNSYPGVKTYMDEIVQEAKHKGFVSTIMK 772 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I S ++R+ ER A+N PIQGSAADI ++AMI + L++ L +LLQ+ Sbjct: 773 RRRYLPDITSRNFNMRSFAERTAMNTPIQGSAADIIKKAMIDLDHRLKEENLQANVLLQV 832 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+ E PE EI +I+ ME + L VPLKV+ +W Sbjct: 833 HDELILEAPENEIDKLKEIVPDVMENT----VELDVPLKVDYSFGKSW 876 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 123/313 (39%), Positives = 182/313 (58%), Gaps = 11/313 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S IYRAF+A PLL+ G+ N + GF ML ++L+ E +H V Sbjct: 3 NKLVLIDGNSIIYRAFFALPLLNNDK-GVYTNGVYGFTTMLLRILE----EEKPTHMLVA 57 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R K P L Q P+++ AF I ++ +EADDII T Sbjct: 58 FDAGKTTFRHSTYKEYKGGRQKTPPELSEQFPVLKELLDAFSIKYYQLDQYEADDIIGTL 117 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 + A+K+ + VT+IS DKDL+QLVS + T K EK ++++K I P++++ Sbjct: 118 SKQADKKDWEVTVISGDKDLLQLVSEQVTVSVTKKGISDIEKYTPAYMLEKMEITPDQII 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+AL GDS DNIPG+PG+G KTA LL++Y NLEN+ + I KK +EN+ + E A Sbjct: 178 HLKALMGDSSDNIPGVPGVGEKTATKLLKQYENLENVYEHIDEISGKKLKENLSNHREDA 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA--TTYDCDAAN 298 +S++LV + + PI I LE+L + ++ K L F L++RV+ T D + N Sbjct: 238 FMSKELVTINRESPIEITLENLPYQGFQTSSVVQIFKDLGFQSLLSRVSEETEDDAEQPN 297 Query: 299 IEPVVLDINTTEN 311 IE ++ + EN Sbjct: 298 IEMESIEFDVVEN 310 >gi|325912106|ref|ZP_08174504.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D] gi|325476056|gb|EGC79224.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D] Length = 883 Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 212/532 (39%), Positives = 330/532 (62%), Gaps = 24/532 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 LKK E+++ K ++K + + L R I++ +DIML SY+ DS ++ DI +A Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLDITLSNVTDDIMLASYIADSENNARDIGVLANS 423 Query: 512 WL-SYTRK-EIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + SY + EI+ ++ S+ +D + H +V+ +L + P+L + + Sbjct: 424 YQESYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQV 478 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 H+Y+ ++ P+ ++++MEI GI++ L ++ ++ + L+ IY L+GEKFN++SP Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KLK KTKTG + T+ LE++ +PI+ +IL++RQ+SKI+STY + Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L ++I + ++HT + T TGRL+S+EPNLQNIP+K + G++IR+AF+ P K+ Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802 L S DYSQ+ELR+LAH++ + + F+ DIH A +IFG+ N+++V+P MRRHAK Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF I+YGIS + LA L I R EA ++I YF ++P I +Y++ R+ GY ETI Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 RR +I++ +IR+ ER AIN+PIQGSAADI + AMI + LE KL TKM+L Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+F+VP EE+ ++ M++A L VPL + +NW E Sbjct: 834 QIHDELLFDVPSEELDLIKILVPKIMQQAA----QLDVPLIADANWGHNWYE 881 Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L ++ D GL NAI F NML LL+N + +H Sbjct: 4 LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD +TFRN++Y DYK R K P L QLP+++ GI + E+ +EADDI Sbjct: 57 MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 + T + GF VTI++ D+DL QL + T K+ D+E H+ + +G+ Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++AL GD+ DN PG+ +G KTA+ L+ +YG++EN+ +IK K +E ++ Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A L +KL + P+ + ++ + L+ +L SF + L F K ++ + + D Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295 >gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] Length = 880 Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 199/562 (35%), Positives = 347/562 (61%), Gaps = 16/562 (2%) Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTK----EILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 F+ + +D V+ + S G + L + +IL ++ E+E KIG+ +K D + L Sbjct: 324 FRTDANILDQDVYMTYLSLGNDKLYRVHGDDILK-IRTILEDEDIEKIGYEMKADYVALK 382 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRS-SHDIASIAQKWLSYT---RKEILKSRKSSIPIDK 532 YGI +R DI + YV+DS S S+DI SI+ K++ T ++++L ++ + Sbjct: 383 PYGIDLRNMAFDIAIAEYVIDSKTSTSYDIDSISSKYIYKTIMSKEDLLGKGAKALDYRQ 442 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + ++ ++ + I+ + ++ + ++L ++ ++ P+++V+++ME GI +D+ Sbjct: 443 VDLEKLDQYVSGMLSTIIGSYPKMKKIIDEDQLSMLFYDVEMPLVEVLAEMEYAGICVDR 502 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 D+L ++ + + + E+NI++L+G+ FN++SPKQLG ILF KL P KTKTG + T Sbjct: 503 DILSNLAKDFDEIIDKTEKNIHELAGQDFNVNSPKQLGHILFEKLGLPVIKKTKTG-YST 561 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A+ LE++ + II I E+R + K+KSTY D + +N + R+H+ ++ T TGR Sbjct: 562 NAEVLEKLR-DKHEIINMITEYRSVVKLKSTYVDGIEALVNAKDGRIHSSFNQTITTTGR 620 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 ++S +PN+QNIP++TD+G++IR+ FI+ + L+ ADYSQ+ELR+LAH+++ + + F Sbjct: 621 ISSTDPNMQNIPVRTDMGRQIRKVFIAGDSMSLVDADYSQVELRVLAHMSQDPHMIEAFN 680 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIHR A+++F V+ +V+P++R AK +NF IIYG S F LA L I + +A +YI Sbjct: 681 SGEDIHRKTASQVFNVDFNQVTPELRSAAKAVNFGIIYGKSDFGLAQDLNISQKKAKEYI 740 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 + YF+++ I +++ + + GY TIF RR + EI S +N +RAA+NAPI Sbjct: 741 ESYFNKYETIKAFMDHIVSEAEEKGYSTTIFNRRRYIPEIKSSNFVEKNRGKRAAMNAPI 800 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAADI + AM++V+ L++ L ++++LQ+HDEL+ E +E+T ++ ME A Sbjct: 801 QGSAADIIKIAMVNVYNRLKEKGLKSRLILQVHDELIVEATADELTQVEVLLREEMENA- 859 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 +NL V LKV++ + +W E Sbjct: 860 ---VNLGVDLKVDLNIGKSWYE 878 Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 149/470 (31%), Positives = 234/470 (49%), Gaps = 64/470 (13%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K+N L L+DG+S I RAF+A P + GL NAI GF ML+K++++ SH + Sbjct: 2 KKNRLLLIDGNSIINRAFFALPPMDNGQ-GLHTNAIYGFLTMLFKMIKSYE----PSHIS 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD A TFR++ Y +YKA R K+P L QL ++ I EI+G+EADDI+ Sbjct: 57 VAFDMKAPTFRHKSYTEYKAGRKKMPGELAMQLDPLKDVLDKLNIDREEIEGYEADDILG 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178 T + AEKEG+ V I++ D+D +QL S T + T K E+ D + V+ ++ + P++ Sbjct: 117 TLSLDAEKEGYEVYIVTGDRDAIQLASDNTRVLITKKGVGEVEEYDAQAVMDRYSLTPDQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK--QKKRRENILEY 236 + L+ L GD DNIPGIPGIG KT LL EY ++ +L N ++K QKK+ E E Sbjct: 177 FIDLKGLMGDKSDNIPGIPGIGEKTGIKLLLEYKTVQGVLDNVDKLKGAQKKKVE---EN 233 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E+A +S+ L + +VP+ L+ + + + ++ + L+FT LI R+ Sbjct: 234 MESALMSKDLATIFREVPLDYSLDQMAFGEFSVEEVVKAFQELKFTSLIARLN------- 286 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 D+ E++ IE K + F + DQ + Q K+F Sbjct: 287 --------DLTGQEDQAADIEI-------CKLTDFDAFIDQVK--DRGQIFMKVFRTDAN 329 Query: 357 KLSQ--------------YPINNDSYTKI---VNTKDIQQ--WVQKLETIGSASFKIITD 397 L Q Y ++ D KI + +DI++ + K + + + I Sbjct: 330 ILDQDVYMTYLSLGNDKLYRVHGDDILKIRTILEDEDIEKIGYEMKADYVALKPYGIDLR 389 Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETI---FIDLSVHTSQDSTGKNT 444 M AF IAIA +D K TS+ +++I +I ++ + +D GK Sbjct: 390 NM-AFD---IAIAEYVIDSKTSTSYDIDSISSKYIYKTIMSKEDLLGKGA 435 >gi|14916560|sp|Q9RLB6|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica] Length = 921 Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 198/412 (48%), Positives = 266/412 (64%), Gaps = 7/412 (1%) Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 K +Y +D P+ ++ +ME GI++D + LKQ+S E +L LEE I+ LSG KFN+ Sbjct: 514 KAFRLYSDIDLPICFILDKMEKVGIKVDANYLKQLSTEFGAEILKLEEEIFALSGTKFNI 573 Query: 624 SSPKQLGDILFTKLKFPSG-AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 S KQLG+ILF K++ P G A K + T A+ LE+++ I +L WRQL+K+K+ Sbjct: 574 GSLKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKN 633 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY DSLP I+ T RVHT + ST TGRL+S EPNLQN+PI++ G KIR+AFI+ Sbjct: 634 TYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFIAEEG 693 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 KLISADYSQIELRIL+HIA I L Q F N DIH A +IF + +++ + RR AK Sbjct: 694 YKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHELTNEHRRKAK 753 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 INF IIYGIS F LA QL + EA++YIK+YF + G+ EY+E+TK F NGYV Sbjct: 754 AINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFASSNGYVTNF 813 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 FGR+ I+ K ++ ERAAINAPIQG+ ADI + AMI++ + +E KL T+++L Sbjct: 814 FGRKCFVPLIHDKK--LKQFAERAAINAPIQGTNADIIKIAMINLDQEIEKRKLKTRLVL 871 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+FE P +E+ II ME + N+ VP+ I+ NNW E Sbjct: 872 QIHDELLFEAPIDEVEIIIPIIKKIMEYST----NMDVPIITEIRTGNNWME 919 Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 128/322 (39%), Positives = 188/322 (58%), Gaps = 8/322 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M ++N L L+DG F++RA+YA PL S K G PV A+ GF +ML KLL + + + Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYAQQPLTSPK--GEPVGALYGFTSMLLKLLSDFKPK---- 54 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD FR+ IYP+YKANRP PE L+ QLPLVR P +E G+EADD Sbjct: 55 HVAVVFDSGGKNFRHYIYPEYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADD 114 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IIAT+ G V IIS+DKDL+QL+S +YD ++ + I + V+KK+G +K+ Sbjct: 115 IIATFATKTAALGENVVIISSDKDLLQLMSENIKIYDPLRGKYITEDDVVKKFGTTSDKL 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GD DNIPG+P IG KTA+ L+ ++G++ENI + ++ K+RE + E Sbjct: 175 REVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQNSREA 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A +S +L+ L ++V + L +L N +L FL+ F L R +D + Sbjct: 235 ALISWQLIGLDSNVDLDFQLNNLEWSPPNSDKLTGFLQEYGFRSLYKRAENLFDIKINDH 294 Query: 300 EPVVLDINTTENKGIAIETEID 321 + +V D TE K I+ + E++ Sbjct: 295 KDIV-DNKVTEIKEISNKLELE 315 >gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila melanogaster] Length = 858 Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 217/511 (42%), Positives = 310/511 (60%), Gaps = 35/511 (6%) Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 LKI HNIK + + + +D+M+MSY LD+G+ H I +I LS EI Sbjct: 361 LKIIHNIKEIRKIFPAIEKMLDSVDDLMIMSYSLDTGKHDHSIPNIVAHNLS-ENAEIF- 418 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 S K+ I I + L+ +L EKLL +YER DKP++ V+ Sbjct: 419 SAKTLIAIHE----------------------KLKQRLFQEKLLTIYERFDKPLMKVIFD 456 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI ++ L+++S + + + LE+ IY+L+GE+FN++SPKQL D+LF K+ Sbjct: 457 MEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNKMGLNKK 516 Query: 643 AKTKTGQWKTTAQD-LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 K+K +T + LE + I IL WR LSK+K TY D+L ++ R+HT Sbjct: 517 KKSKKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHT 576 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 +S +T TGRL+S PNLQNIPI+++ G IR+AFI+P K+ISADYSQIELR+LAH+ Sbjct: 577 SFSTTATATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHV 636 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 A + + F N DIH + A ++FGV +++ Q+RR AK+INF IIYGISPF LA +L Sbjct: 637 ANVAAFKEAFANGQDIHEITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRL 694 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I +EAA+YI YF +P I Y+EK + R +GYVET+FGRR +IN+ IR Sbjct: 695 GITIAEAAEYINYYFSCYPEIKAYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYIRQ 754 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ERAAINAP+QG+AADI +RA I + L+ K++LQ+HDEL+ EV +E++ + Sbjct: 755 FAERAAINAPLQGTAADIIKRATIQLFDQLK----VGKIILQVHDELLVEVEDEKVQETA 810 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++I ME A I + +PL+V IK+ +NW Sbjct: 811 KLIKDIMENA----IEISIPLEVEIKIGDNW 837 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 175/299 (58%), Gaps = 8/299 (2%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 KE ++DG F++RA+Y P L G+P+ + GF NM+ K + +S +IA Sbjct: 2 KEKTFTIIDGYGFLFRAYYVLPHLITT-TGMPIGGVYGFLNMVLKYIAHSDYLTIA---- 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 D FR+ +YP+YKANR PE L PQ ++R A +AF + EI+G+EADDIIA Sbjct: 57 --LDAGKKNFRHNLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIA 114 Query: 123 TYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T A + F V ++S+DKDL QL++ ++D +K ID + VI+K+G+ K++ Sbjct: 115 TLAAKYANHQDFKVVVVSSDKDLFQLLNHNILIFDPIKNIYIDEKQVIEKFGVNSHKLLD 174 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L +LTGD+ DNIPG+PGIG KTAA LL E+ +L NI+ N I+Q + R + E+ E A Sbjct: 175 LFSLTGDASDNIPGVPGIGPKTAAKLLDEFDSLNNIIENIDNIEQTRIRNILAEHKEKAL 234 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +SR+L+ L V + + + N +L+SFLK EF LI +V + ++ E Sbjct: 235 ISRELLSLCEKVDLQHDIAKCEVRPPNMEKLLSFLKKYEFNSLIGKVEKLFSYSGSSTE 293 >gi|297518776|ref|ZP_06937162.1| DNA polymerase I [Escherichia coli OP50] Length = 665 Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 237/716 (33%), Positives = 372/716 (51%), Gaps = 68/716 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYKP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA------ 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I R + A Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKIMAAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 E A LS +L ++TDV + + E L ++ L+ K EF + V A Sbjct: 241 EVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK 300 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +P Q +S++D+ ++ + Sbjct: 301 GAKPAA------------------------KPQETSVADEAPEVTATV------------ 324 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ D+Y I++ + ++ W+ KLE +F TD++D + + ++ + ++ Sbjct: 325 -----ISYDNYVTILDEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S++ L LK E+E LK+G N+KYD+ +L Sbjct: 379 VAAYIPVAHDYLDAPDQISRERA---------LELLKPLLEDEKALKVGQNLKYDRGILA 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKI 533 YGI +RG D ML SY+L+S HD+ S+A++WL + T +EI K+ + ++I Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQI 489 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +A E+++V LQL L + P L K L+V+E ++ P++ V+S++E G++ID Sbjct: 490 ALEEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDP 549 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L S E++ L LE+ ++++GE+FNLSS KQL ILF K KT G T Sbjct: 550 KVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Y A T Sbjct: 610 SEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVT 664 >gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16] gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16] Length = 877 Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 200/505 (39%), Positives = 315/505 (62%), Gaps = 16/505 (3%) Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----ILKSRKSSI 528 + L +G+ + G + D+ + SY+LD SSH+I+ IA + + E K K S+ Sbjct: 379 VALAWHGVDLNGVDFDLQMASYLLDPSLSSHEISDIATRKGTGGVAEDEAVYGKGAKRSL 438 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 P ++ + EH +N + L L +L + L + ++L+ P+ V+ +ME G+ Sbjct: 439 P----EEAALAEHLCRKANAMFTLKSTLEDELAQNEQLELLKKLEMPLSVVLGRMEKEGV 494 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ++D++ L+++ ++S L +LE+ I+ +GE FN++SPKQLG ILF KL P KTKTG Sbjct: 495 RVDREQLEEMGKDLSDRLNTLEKAIHKEAGEPFNINSPKQLGVILFEKLGLPPVKKTKTG 554 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T+A LE++ G +PII+++L +RQL K+ STY + L I+ T +VHT ++ A T Sbjct: 555 -YSTSADVLEKL-AGTHPIIEHLLLYRQLGKLYSTYIEGLLKVIDSETGKVHTRFNQALT 612 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPL 767 TGRL+S +PNLQNIPI+ + G+KIR+AF+ S K+++ADYSQIELR+LAHI+ + Sbjct: 613 QTGRLSSTDPNLQNIPIRLEEGRKIRKAFVASKEGWKIVAADYSQIELRVLAHISGDERM 672 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F +DIH A ++F V E+V+ MRR AK +NF I+YGIS + L+ L I R E Sbjct: 673 KEAFLTGMDIHTKTAMDVFHVKREEVTDLMRRSAKAVNFGIVYGISDYGLSQSLGITRKE 732 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A D+I RY +P + Y+E ++ GYV+T+ RR + E+ S + R+ ER A Sbjct: 733 AKDFIDRYLASYPQVKAYMENVVKEAKEKGYVQTLLARRRYLPELKSRNFNQRSFAERTA 792 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +N PIQG+AADI +RAM+ + ++LE+ L MLLQ+HDEL+FEV +++ +++ Sbjct: 793 MNTPIQGTAADIIKRAMVKMSEALEETGLKANMLLQVHDELIFEVAPDDVEPLQELVTEV 852 Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972 ME+A + L VPL+V++ N+W Sbjct: 853 MEQA----LELDVPLQVDVSSGNSW 873 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 115/308 (37%), Positives = 170/308 (55%), Gaps = 9/308 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S YRAF+A PLL+ + G NA+ GF ML K+L++ + SH V FD Sbjct: 4 LVLIDGNSIAYRAFFALPLLNNEK-GEYTNAVYGFTTMLLKVLEDEK----PSHMLVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ Y YK R K P L Q+P++ AF I E+ +EADDII T Sbjct: 59 AGKSTFRHQTYAAYKGTRQKTPSELSGQIPMIHQVLDAFSIKRYEVDEYEADDIIGTAAT 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 A KEGF V +I+ DKDL+QLV + T K ++ + E V +++G+ P++++ L Sbjct: 119 NAAKEGFDVVVITGDKDLLQLVDDRVEVVLTKKGISEVDRYNREKVAERYGLEPKQIIDL 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GDS DNIPG+PG+G KTA LL E+ ++E +L + I KK +E + E + A L Sbjct: 179 KGLMGDSSDNIPGVPGVGEKTALKLLAEFRDVETVLDSIDAISGKKLKERLQENKDQALL 238 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S+KL + DVP+ L+ ++ K L F L+ R+ D ++A + Sbjct: 239 SKKLATIALDVPLAETLDSFEYGGYEYKQVKEAFKELSFHSLLGRIDGNGDEESAPQQLT 298 Query: 303 VLDINTTE 310 LD + E Sbjct: 299 ELDFDIVE 306 >gi|261408692|ref|YP_003244933.1| DNA polymerase I [Paenibacillus sp. Y412MC10] gi|261285155|gb|ACX67126.1| DNA polymerase I [Paenibacillus sp. Y412MC10] Length = 886 Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 207/573 (36%), Positives = 338/573 (58%), Gaps = 18/573 (3%) Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468 + + ++ D + I + L+ Q + L E ++ + + K G++ Sbjct: 323 VTVLHVETHGDNPHHADVIGLALATEERQYFLPFDVLKSEEAEPVRAWLADSEIPKRGYD 382 Query: 469 IKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKE---ILKS 523 + L LH GI+ G D+ L +Y+LD S+ ++ +A K+ L+Y + + K Sbjct: 383 LHRIDLALHWQGIAFAGAAFDVHLAAYLLDPTESNQTLSGLASKYGLAYLQADEDVFGKG 442 Query: 524 RKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K +P ++K+S EH + +L + +L ++L ++ L+ P+ +++ Sbjct: 443 AKYKVPDVEKLS-----EHMARKCLAVSELVPIQEKELAANEMLPLFHDLEMPLSRILAD 497 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI ++ + LK++ E + L + IY+++G +FNL+SPKQLG+ILF KL+ P Sbjct: 498 MEKQGIAVNAEDLKELGREFEGQIAKLVQEIYEIAGTEFNLNSPKQLGEILFVKLELPVI 557 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T A+ LE++ + I++ IL++R L+K++STY + L I+ T +VHT+ Sbjct: 558 KKTKTG-YSTDAEVLEKL-APYHDIVRLILQYRTLAKLQSTYVEGLLKEISSVTGKVHTY 615 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761 Y TGRL+S PNLQNIPI+ + G+K+R+ F+ S P +++ADYSQIELR+LAHI Sbjct: 616 YRQTIAATGRLSSQYPNLQNIPIRLEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHI 675 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 + L + F + +DIH A ++FGV +++V MRR AK +NF I+YGIS + L+ L Sbjct: 676 SDDERLKEAFVHDMDIHTKTAMDVFGVGMDEVDSNMRRSAKAVNFGIVYGISDYGLSQNL 735 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I R EAA +I +YF F G+ Y++ +Q+GYV+T+ RR + EIN+ ++R+ Sbjct: 736 NITRKEAAAFIDQYFEVFQGVRRYMDVIVKQAKQDGYVKTLLERRRYLPEINASNFNLRS 795 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER A+N PIQG+AADI + AM+ + K+L + +L ++MLLQ+HDELVFEVPE+E+ Sbjct: 796 FAERTAMNTPIQGTAADIIKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVMK 855 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ M +A + L VPLK + NW E Sbjct: 856 ELVPDVMSQA----LKLSVPLKSEVSYGENWYE 884 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 113/320 (35%), Positives = 179/320 (55%), Gaps = 16/320 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG++ IYRAF+A P L+ G NA+ GF ML +L++ + +H V Sbjct: 2 DKLILIDGNNIIYRAFFAMPPLTNA-SGQQTNAVYGFTTMLLRLIEEHK----PTHMMVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + +YK R K P L Q PL++ + G+ EI G+EADDII T Sbjct: 57 FDAGKETFRHADFQEYKGGRQKTPPELSGQFPLLKELLKGLGVSQFEIGGYEADDIIGTI 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 T A++ G V ++S DKD++QL S T + V++ +IE+ + +++ + P+++ Sbjct: 117 TRQADEAGRKVMVVSGDKDMLQLASEHTTIA-MVRKGVTEIEYYGPEQIKERYNLTPDQI 175 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+ L GD+ DNIPG+PG+G KTA LL E+G++E ++ +K K +E I E+A++ Sbjct: 176 IDLKGLMGDASDNIPGVPGVGEKTALKLLHEFGSVEAVVSRTDELK-GKMKEKIEEHADS 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDA 296 A LS+KL + +VP+ L+ + N L LEF LI R+ + DA Sbjct: 235 AILSKKLATIFREVPLEQSLDEMAFTGLNEETAGPALAKLEFKSLIERLNLSTSGAPGDA 294 Query: 297 ANIEP-VVLDINTTENKGIA 315 A +P +D+ + GIA Sbjct: 295 AESKPEAKIDVTLVDATGIA 314 >gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54] gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54] Length = 889 Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 206/528 (39%), Positives = 311/528 (58%), Gaps = 12/528 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLDSGRS---SH 503 E+++ L+ LK+GHN+KYD VL + G+ + D M+ +++L+ GR+ Sbjct: 367 EVMAVLEPLLTCADILKVGHNLKYDWTVLKMQTGVEIFPLADTMVAAHLLEKGRTLKLDD 426 Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 A I + S+ E++ K + ++ + ++ E+ L LW KL + Sbjct: 427 LCAEIGLELTSFA--EVVAEDKRADAFAYVALKEACHYSCEDVYGALSLWQDFGEKLSDK 484 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 L ++ ++ P+I V+++MEI G+ +D +L +++A+ + + L IY G +FN+ Sbjct: 485 ALDGLFYDVEMPIIPVLAKMEIGGVCLDSTVLVELAAQFEEQIGELAATIYQEVGHEFNI 544 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 SSPKQLG ILF +L P G KTKTG + T + +E++ +P+ IL++R ++K+KST Sbjct: 545 SSPKQLGVILFEELGLPHGRKTKTG-FSTDVKVMEKL-ASQHPVPALILKYRTIAKLKST 602 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y D L N T R++T ++ T TGRL+S PN+QNIPI+ + G +IRRAF+ K Sbjct: 603 YVDKLLLLKNPETGRIYTSFNQTITATGRLSSSNPNMQNIPIRMEEGNRIRRAFVPEAGK 662 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 ++ADYSQI+LR+LAH + L + F DIH AAE+F V+ V+P+MRR AK+ Sbjct: 663 VFLAADYSQIDLRVLAHYSGDDALTRAFAAGQDIHARTAAELFSVSTMLVNPEMRRVAKS 722 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 INF I+YG+S F LA QL I R EA +I RYFH + G+ +++ R+ GY T+ Sbjct: 723 INFGIVYGMSAFGLAQQLGIGRKEAQRFIDRYFHLYAGVKQFMIDIVEQTRERGYATTLL 782 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 GRR +I++ +R ER AIN PIQG+AADI + AMI+V K L L KMLLQ Sbjct: 783 GRRRAVPDIDAKNKGMREFAERMAINTPIQGTAADIIKCAMIAVEKKLAAAGLGAKMLLQ 842 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 IHDELVFEV E E+ ++ +ME A + L VPL NI+V ++ Sbjct: 843 IHDELVFEVSEAELAETRVVVQEAMESA----LQLDVPLVANIEVGHS 886 Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 111/283 (39%), Positives = 172/283 (60%), Gaps = 7/283 (2%) Query: 4 ENHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 +N+++++DGS++IYRA++A PL +R +GL +AI GF NM+ +L+ K+ + + Sbjct: 2 KNNIYVIDGSAYIYRAYHAVAPLTTR--EGLHTHAILGFVNMIRRLI----KDKVPALMV 55 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD FR+E+YP YKANRP +PE L Q+P ++ +A G+ +E G EADDIIA Sbjct: 56 IAFDSRGPVFRHEMYPKYKANRPMMPEDLQEQIPYIKEFVKASGLLLLEEAGVEADDIIA 115 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 + E AVT++S DKDL+QLV ++D +K++ +D V +K+ + P +++ Sbjct: 116 SIAKKFASEECAVTVVSGDKDLLQLVDANVSMFDPMKDKLMDSVAVHEKYNVYPHQLLDT 175 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GDS DNIPG+PG+G KTA L+ +G+LE + N S +KQ K +E I+ + A L Sbjct: 176 FALMGDSADNIPGVPGVGPKTAEKLINAHGSLEGLYENVSGMKQSKMKEKIIANRDLAFL 235 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 SR L+ L+ DV I L+ L +L LEF + + Sbjct: 236 SRDLISLKMDVEIPSALQDYQLGGEQEAQLNELFTKLEFNRFL 278 >gi|295693393|ref|YP_003602003.1| DNA polymerase i [Lactobacillus crispatus ST1] gi|295031499|emb|CBL50978.1| DNA polymerase I [Lactobacillus crispatus ST1] Length = 887 Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 209/527 (39%), Positives = 326/527 (61%), Gaps = 17/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L+ E+E K ++K + LHR GI + G + D++L SY++++ +S+D+ IA Sbjct: 367 LRHLLEDEQIKKNVFDLKRTMVGLHRLGIHVHGQDYDMLLASYLINNENNSNDLGEIAHL 426 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K EI K + +P D D ++ H N I L L KL + Sbjct: 427 YGDYSVKTDIEIYGKGKSEHVPDD---DEELFNHLASKVNAIENLKQPLLEKLKEHEQDD 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ ++ P V+++MEI G++++ L ++ E + L LE+ IY +GE+FNL+SPK Sbjct: 484 LFDTIEIPTARVLARMEINGMKVEASTLLELQNEFAVRLKELEDKIYQQAGERFNLNSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + L+Q+ +PI+ IL++RQ++KI+STY Sbjct: 544 QLGHILFEKLNLPVIKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 601 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + I + RVHT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ + P + Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPTEPDGYIF 660 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S DYSQ+ELR+LAH++ + + F+ DIH A IF ++ ++V+P MRRHAK +N Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVN 720 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R A ++I YF ++P I EY++K R+ GY ETI R Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHR 780 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ K ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TKM++Q+H Sbjct: 781 RRYLPDIHAKKFTVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVH 840 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883 Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 117/310 (37%), Positives = 170/310 (54%), Gaps = 15/310 (4%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L S K DGL NAI F NML LL K+ +H V Sbjct: 6 LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y DYK R K PE LL Q+P ++ GI E++ +EADDII T Sbjct: 62 AFDAGKVTFRTKMYGDYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKDYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + E+ GF TI++ D+DL QL S T + T + E EH+ + G+ P + Sbjct: 122 FATKGEENGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GDS DN PG+ GIG KTA+ L+Q+Y +EN+ + +K KR+E ++ Sbjct: 182 IDMKALMGDSSDNYPGVEGIGPKTASNLIQKYHTVENLYDHIDDLKASKRKERLIRDKHN 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298 A L +KL + P+TI ++ + + + +L F + + F K + + A+ DA Sbjct: 242 AILGKKLATIDRHSPVTIDIDDVKRQPIDYEKLRQFYEKMNFRKFLAELNASGQGQDATE 301 Query: 299 IEPV---VLD 305 +E V VLD Sbjct: 302 VEKVEYTVLD 311 >gi|312984114|ref|ZP_07791461.1| DNA polymerase I [Lactobacillus crispatus CTV-05] gi|310894468|gb|EFQ43543.1| DNA polymerase I [Lactobacillus crispatus CTV-05] Length = 887 Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 209/527 (39%), Positives = 326/527 (61%), Gaps = 17/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L+ E+E K ++K + LHR GI + G + D++L SY++++ +S+D+ IA Sbjct: 367 LRHLLEDEQIKKNVFDLKRTMVGLHRLGIHVHGQDYDMLLASYLINNENNSNDLGEIAHL 426 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K EI K + +P D D ++ H N I L L KL + Sbjct: 427 YGDYSVKTDIEIYGKGKSEHVPDD---DEELFNHLASKVNAIENLKQPLLEKLKEHEQDD 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ ++ P V+++MEI G++++ L ++ E + L LE+ IY +GE+FNL+SPK Sbjct: 484 LFDTIEIPTARVLARMEINGMKVEASTLLELQNEFAVRLKELEDKIYQQAGERFNLNSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + L+Q+ +PI+ IL++RQ++KI+STY Sbjct: 544 QLGHILFEKLNLPVIKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 601 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + I + RVHT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ + P + Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPTNPDGYIF 660 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S DYSQ+ELR+LAH++ + + F+ DIH A IF ++ ++V+P MRRHAK +N Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVN 720 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R A ++I YF ++P I EY++K R+ GY ETI R Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHR 780 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ K ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TKM++Q+H Sbjct: 781 RRYLPDIHAKKFTVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVH 840 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 117/310 (37%), Positives = 170/310 (54%), Gaps = 15/310 (4%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L S K DGL NAI F NML LL K+ +H V Sbjct: 6 LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y DYK R K PE LL Q+P ++ GI E++ +EADDII T Sbjct: 62 AFDVGKVTFRTKMYGDYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKDYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + E+ GF TI++ D+DL QL S T + T + E EH+ + G+ P + Sbjct: 122 FATKGEENGFITTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GDS DN PG+ GIG KTA+ L+Q+Y +EN+ + +K KR+E ++ Sbjct: 182 IDMKALMGDSSDNYPGVEGIGPKTASNLIQKYHTVENLYDHIDDLKASKRKERLIRDKHN 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298 A L +KL + P+TI ++ + + + +L F + + F K + + A+ DA Sbjct: 242 AILGKKLATIDRHSPVTIDIDDVKRQPIDYEKLRQFYEKMNFRKFLAELNASGQGQDATE 301 Query: 299 IEPV---VLD 305 +E V VLD Sbjct: 302 VEKVEYTVLD 311 >gi|315653652|ref|ZP_07906572.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195] gi|315489014|gb|EFU78656.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195] Length = 890 Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 209/532 (39%), Positives = 327/532 (61%), Gaps = 24/532 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 L K E+++ K ++K + + L R I++ +DIML SY+ DS ++ D+ +A Sbjct: 371 LNKILEDKNIAKQVFDLKRNYVGLQRLDITLSNVTDDIMLASYIADSENNAGDLGVLANS 430 Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + + EI+ ++ S+ +D + H +V+ +L + P+L + L Sbjct: 431 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 485 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 H+Y+ ++ P+ ++++MEI GI++ L ++ ++ + L+ IY L+GEKFN++SP Sbjct: 486 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 545 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KLK KTKTG + T+ LE++ +PI+ +IL++RQ+SKI+STY + Sbjct: 546 KQLGVILFEKLKLAPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 603 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L ++I + ++HT + T TGRL+S+EPNLQNIP+K + G++IR+AF+ P K+ Sbjct: 604 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 660 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802 L S DYSQ+ELR+LAH++ + + F+ DIH A +IFG+ N+++V+P MRRHAK Sbjct: 661 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 720 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF I+YGIS + LA L I R EA ++I YF ++P I +Y++ R+ GY ETI Sbjct: 721 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 780 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 RR +I++ +IR+ ER AIN+PIQGSAADI + AMI + LE KL TKM+L Sbjct: 781 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 840 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+F+VP EE+ ++ M++A L VPL + +NW E Sbjct: 841 QIHDELLFDVPSEELDLIKTLVPKIMQQAA----QLDVPLIADANWGHNWYE 888 Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L ++ D GL NAI F NML LL+N + +H Sbjct: 11 LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 63 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD +TFRN++Y DYK R K P L QLP+++ GI + E+ +EADDI Sbjct: 64 MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 123 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 + T + GF VTI++ D+DL QL + T K+ D+E H+ + +G+ Sbjct: 124 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 182 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++AL GD+ DN PG+ +G KTA+ L+ +YG++EN+ +IK K +E ++ Sbjct: 183 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKTKEYLIR 242 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A L +KL + P+ + ++ + L+ +L SF + L F K ++ + + D Sbjct: 243 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 302 >gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98] Length = 877 Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 203/526 (38%), Positives = 322/526 (61%), Gaps = 20/526 (3%) Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL 513 K+ ++E K + K + L G+ +RG + D+++ +Y+LD + D ++A+ Sbjct: 360 KWLKDEEMRKYTFDAKRAIVALKWKGVEIRGVDFDLLIAAYLLDPADTDKDFRTVAKMKE 419 Query: 514 SYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569 ++ K E+ K K ++P +I V EH +V+ + +L + ++ Sbjct: 420 THAVKSDEEVYGKGAKRAVPAQEI----VAEHVARKVHVLYDVKQTFIDELEKNEQYELF 475 Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629 L+ P+ V++ ME+ G+++D + L+ + E++ L +E+ IY+L+G +FN++SPKQL Sbjct: 476 INLEMPLACVLADMEVKGVKVDTERLRNMGDELAGRLKEMEQEIYELAGTEFNINSPKQL 535 Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689 G +LF KL P KTKTG + T+A L+++ + II IL +RQL K+ STY + L Sbjct: 536 GVVLFEKLNLPVIKKTKTG-YSTSADVLDKL-MDHHEIIPKILHYRQLGKLNSTYIEGLL 593 Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LI 746 ++ + ++HT ++ T TGRL+S EPNLQNIPI+ + G+KIR+AFI P+++ + Sbjct: 594 KVVHDESSKIHTRFNQVLTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFI--PSQEGWVMY 651 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 +ADYSQIELR+LAHIAK L + F++ +DIH A ++FGV ++V+ MRR AK +NF Sbjct: 652 AADYSQIELRVLAHIAKDKGLIEAFQHDMDIHTKTAMDVFGVEKDEVTANMRRQAKAVNF 711 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YGIS + L+ L I R A ++I++YF FPG+ EY+++ +Q GYV T+ RR Sbjct: 712 GIVYGISDYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRR 771 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + EI S ++R+ ER A+N PIQGSAADI ++AMI + LE+ L ++LLQ+HD Sbjct: 772 RYIPEITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIVMADRLEEEGLQARLLLQVHD 831 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EL+FEVP+EEI +++ ME A I L VPLKV+ W Sbjct: 832 ELIFEVPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 873 Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ + DYK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTFSDYKGGRQKTPPELSEQFPFIRELLDAFRVPRYELEDYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEASEQGAQVKVISGDKDLLQLVSDHTRVCIPRKGITEVDEYTKEALFEKYNLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + E Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENLDQVSGKKLKEKLETHKEQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298 A +S++L + TD PIT+ ++ + + +I + L FT L+N++ A + + +A Sbjct: 237 AFMSKELATIITDAPITVHIDDIEYKGYEAGDIIPLFENLGFTSLLNKLGAPSEEAVSAE 296 Query: 299 IEPVVLDI 306 ++ + +I Sbjct: 297 LDDISFEI 304 >gi|227543926|ref|ZP_03973975.1| DNA polymerase I [Lactobacillus reuteri CF48-3A] gi|300909675|ref|ZP_07127136.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112] gi|227186077|gb|EEI66148.1| DNA polymerase I [Lactobacillus reuteri CF48-3A] gi|300893540|gb|EFK86899.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112] Length = 888 Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 215/528 (40%), Positives = 318/528 (60%), Gaps = 18/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK +++ K N K + LHR GI + D++L SY+L++ +S+D+ +AQ+ Sbjct: 366 LKDLLQSDSVKKNVFNAKAQIVGLHRLGIPLENINFDLLLASYLLNTNDNSNDLGQVAQE 425 Query: 512 WLSY----TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 Y T +E+ K K ++P D D H + I L KL K Sbjct: 426 H-GYDDVRTDEEVYGKGAKRAVPDD---DETFFSHLATKARAIEHLRKDFFAKLDENKQT 481 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 +Y ++ P+ V+++MEI G+ +D LK + +++++ L +E IY +GE+FN++S Sbjct: 482 PLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAGEEFNINST 541 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KLK P KTKTG +TA D+ + +PI++ ILE+RQ++K++STY Sbjct: 542 KQLGHILFEKLKLPVIKKTKTGY--STAVDVLEKLADKSPIVEQILEYRQIAKLQSTYIT 599 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745 L I+ Q++HT Y T TGRL+S++PNLQNIP++ G+ IR+AF+ S ++ Sbjct: 600 GLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQI 659 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTI 804 S+DYSQ+ELR+LAHI L + F+N DIH A IF + + ++ MRR AK + Sbjct: 660 FSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAV 719 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + LA ++ + R+EA ++I+ YFH FPG+ +YI T F ++NGYVETI Sbjct: 720 NFGIVYGISDYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITH 779 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I++ S R+ ER A+N PIQGSAADI + AMI + LE L KMLLQI Sbjct: 780 RRRYLPDIHAKSFSKRSFAERTAMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMLLQI 839 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDELVFE P+EEI S+++ M+ A + L VPLKV+ K + W Sbjct: 840 HDELVFEAPKEEIPILSELVPKVMDSA----VKLDVPLKVDSKYGDTW 883 Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 110/314 (35%), Positives = 167/314 (53%), Gaps = 13/314 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S ++RAF+A K DGL AI GF ML +LQN + ++ V Sbjct: 5 LLLIDGNSIVFRAFFAMHNQMDKFTNKDGLHTAAIYGFKLMLDHVLQNFKPDTAL----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y DYK R K P L Q+P VR + G+ + E+ +EADDII T Sbjct: 61 AFDAGKVTFRTKMYDDYKGGRNKTPNELTEQIPYVRELIKDSGLHSYELANYEADDIIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179 A+ G+ I++ D+DL QL S T + T K E HV +K GI P ++ Sbjct: 121 LAKQADDAGYKTLIVTGDRDLTQLASENTTVAVTHKGVTDTEHYTPAHVEEKLGITPRQI 180 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GDS DN PG+ IG KTA L++++G++E + + +K+ K +E+++E E Sbjct: 181 IDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVEELYDHIDDLKKSKMKEHLIEDEEI 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR--VATTYDCDAA 297 AR + L + D P+ I L+ L + LI F K + F + + + + D A Sbjct: 241 ARQCKTLATILRDAPLKIGLDDLQYQGPQTDDLIKFYKEMGFKSFLKKMDIDGAGEEDEA 300 Query: 298 NIEPVVLDINTTEN 311 I P+ + T +N Sbjct: 301 EIAPIDYTVLTKDN 314 >gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911] gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911] Length = 877 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 206/528 (39%), Positives = 319/528 (60%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 KK+ E+E KI ++ K ++ L +GI ++G E D+++ SY+++ S D AS+A++ Sbjct: 358 FKKWAEDESKKKIVYDAKRTEVSLRHHGIHLKGVEFDLLIASYIINPSESIEDFASVAKR 417 Query: 512 ----WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + K K IP + ++ H + + L L +L + Sbjct: 418 HGYNGVQTDDAVYGKGAKRKIP----AQEELAGHLARKAAALEALRDKLEDELKENRQYE 473 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ +++ ME G+++D + L+ + +I++ L +EE I++L+GE FN++SPK Sbjct: 474 LFYDLEMPLSLILADMESQGVKVDLERLQAMGEQINQKLGDIEERIHELAGEAFNINSPK 533 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+A LE++ + II+ IL++RQL K++STY + Sbjct: 534 QLGVILFEKLGLPPVKKTKTG-YSTSADVLEKLED-KHEIIREILQYRQLGKLQSTYIEG 591 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +K+T +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P++K Sbjct: 592 LLKVTDKKTGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEKGWV 649 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIA L + F D+H A E+F V+ +V+ MRRHAK + Sbjct: 650 IFAADYSQIELRVLAHIAGDEKLIEAFREDQDVHTKTAMEVFHVSEGEVTSNMRRHAKAV 709 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R EA +I RY +PG+ EY++ +Q GYV T+ Sbjct: 710 NFGIVYGISDYGLSQSLGITRKEAGQFIDRYLESYPGVREYMDDIIQEAKQKGYVSTLLH 769 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQGSAAD+ ++AMI + L + L +++LL + Sbjct: 770 RRRYLPEITSRNFNLRSFAERTAMNTPIQGSAADVIKKAMIDMADRLREEGLQSRLLLSV 829 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE PEEEI +I+ ME ++L VPLKV+ W Sbjct: 830 HDELIFEAPEEEIEILKRIVPDVMENT----VDLDVPLKVDFSYGPTW 873 Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 109/287 (37%), Positives = 170/287 (59%), Gaps = 9/287 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S YRAF+A PLL+ G+ NA+ GF ML ++L++ SH V FD Sbjct: 5 LVLIDGNSIAYRAFFALPLLNNDK-GIHTNAVYGFTMMLMRILEDED----PSHILVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ + +YK R K P L Q P +R A+ IP E++ +EADDII T + Sbjct: 60 AGKTTFRHKTFTEYKGGRQKTPPELSEQFPFIRDLLDAYQIPRYELENYEADDIIGTLSL 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AE+EGF V +IS DKDL QL S T + T K E+ EH+ +K+G+ P +++ + Sbjct: 120 QAEQEGFEVKVISGDKDLTQLSSEHTTVGITRKGITDIEEYTPEHIREKYGLSPGQIIDM 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GDS DNIPG+PG+G KTA LL+E+ LEN+L + R+ +K +E + E+ + A + Sbjct: 180 KGLMGDSSDNIPGVPGVGEKTAIKLLKEFETLENLLGSIDRVSGQKLKEKLEEHKDLAVM 239 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 S++L + + P+ + +E + + +++S K L F L+ ++ Sbjct: 240 SKELATITREAPVEVKVEDVGYSGYDQAKVVSLFKDLGFNSLLEKIG 286 >gi|312872962|ref|ZP_07733022.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1] gi|311091484|gb|EFQ49868.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1] Length = 883 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 209/532 (39%), Positives = 327/532 (61%), Gaps = 24/532 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 L K E+++ K ++K + + L R I++ +DIML SY+ DS ++ D+ +A Sbjct: 364 LNKILEDKNIAKQVFDLKRNYVGLQRLDITLSNVTDDIMLASYIADSENNAGDLGVLANS 423 Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + + EI+ ++ S+ +D + H +V+ +L + P+L + L Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 H+Y+ ++ P+ ++++MEI GI++ L ++ ++ + L+ IY L+GEKFN++SP Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KLK KTKTG + T+ LE++ +PI+ +IL++RQ+SKI+STY + Sbjct: 539 KQLGVILFDKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L ++I + ++HT + T TGRL+S+EPNLQNIP+K + G++IR+AF+ P K+ Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802 L S DYSQ+ELR+LAH++ + + F+ DIH A +IFG+ N+++V+P MRRHAK Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF I+YGIS + LA L I R EA ++I YF ++P I +Y++ R+ GY ETI Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 RR +I++ +IR+ ER AIN+PIQGSAADI + AMI + LE KL TKM+L Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+F+VP EE+ ++ M++A L VPL + +NW E Sbjct: 834 QIHDELLFDVPSEELDLIRTLVPEIMQQAA----QLDVPLIADANWGHNWYE 881 Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/297 (34%), Positives = 162/297 (54%), Gaps = 13/297 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA K DGL NAI F NML LL+N + +H V Sbjct: 4 LLLIDGNSVAFRAFYALYKQLDKFKSPDGLHTNAIFTFKNMLDVLLKNIQ----PTHMLV 59 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD +TFRN++Y DYK R K P L QLP+++ GI + E+ +EADDI+ T Sbjct: 60 AFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDILGT 119 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEK 178 + GF VTI++ D+DL QL + T K+ D+E H+ + +G+ P++ Sbjct: 120 MAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVTPKQ 178 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + ++AL GD+ DN PG+ +G KTA+ L+ +YG++EN+ +IK K +E ++ Sbjct: 179 FIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIRDKN 238 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A L +KL + P+ + ++ + L+ +L SF + L F K ++ + + D Sbjct: 239 NAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295 >gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair Position gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair Position gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site (- 1 Basepair Position) gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion Site gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion Site (-1 Basepair Position) Length = 580 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 196/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +NF I+ Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 417 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L +LLQ+HDEL+ Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576 >gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus Dna Polymerase I Fragment Bound To Dna And Dctp gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus Dna Polymerase I Fragment Bound To Dna And Dctp Length = 580 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 196/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +NF I+ Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 417 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L +LLQ+HDEL+ Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576 >gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM 12653] Length = 635 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 214/536 (39%), Positives = 331/536 (61%), Gaps = 24/536 (4%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDI 505 E L L+K FE E + H IK D LV Y GI + + D +M+Y+L+ S++D+ Sbjct: 109 ERLEDLRKIFEREDAEFVSHEIK-DFLVKLSYKGIECKSKYLDTAIMAYLLNPSESNYDL 167 Query: 506 ASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL---WLLLRPK 559 + +K+L + +E+ K +++S+ + E+ + + +L + + Sbjct: 168 ERVLKKYLKVDVLSHEEVFGKGKDRRRYEEVSEEVMAEYICGRCSHLFELKDKLMAFIEE 227 Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 + ++KLL ++ P+++V+ ME+ G +D+++LK++S +I + + + + IY +G Sbjct: 228 MDMKKLLL---EIEMPLVEVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGY 284 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 +FN++SPKQLG+ LF KL P KTKTG + T ++ LEQ+ N I+ I+E+RQL+K Sbjct: 285 QFNVNSPKQLGEFLFEKLNLPVIKKTKTG-YSTDSEVLEQLTAY-NDIVSEIIEYRQLTK 342 Query: 680 IKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 +KSTY + LP + RVH+ + TGR++S EPNLQNIP++ + G++IRRAFI Sbjct: 343 LKSTYIEGFLP--LMDENDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFI 400 Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 P TK ++SADYSQIELR+LAH+++ L + F N+ DIH A+E+F V + V+P+ Sbjct: 401 -PRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPE 459 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 MRR AK +NF IIYGIS + LA L+I R EA +YI YF ++ G+ EYIEK F ++N Sbjct: 460 MRRAAKVVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKEN 519 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GYV TI RR + EINS + R+ ER A+N PIQGSAADI + AM+ V++ + L Sbjct: 520 GYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNL 579 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++++LQ+HDELV + ++E+ +I+ SME I L+VPL V I V NW Sbjct: 580 KSRLILQVHDELVVDTYKDELELVKEILKESMENV----IKLKVPLVVEIGVGPNW 631 >gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase Active Site gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active Site gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A Dna Polymerase gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine At The Polymerase Active Site Length = 580 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 196/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +NF I+ Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 417 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L +LLQ+HDEL+ Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576 >gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 437 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 200/437 (45%), Positives = 291/437 (66%), Gaps = 6/437 (1%) Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKS 523 N+KYD+ VL YGI +RG D ML SY+L+S HD+ S++ +WL + T ++I Sbjct: 1 NLKYDRGVLQNYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIAGK 60 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQ 582 K+ + ++I+ + +A E+++V LQL L + P+L K L+V+E ++ P++ V+S+ Sbjct: 61 GKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSR 120 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 +E G++ID +L + S EI+ L LE+ +D++GE FNLSS KQL ILF K Sbjct: 121 VERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPL 180 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KT G T+ + LE++ D P+ K ILE+R L+K+KSTY D LP IN +T RVHT Sbjct: 181 KKTPGGAPSTSEEVLEELAL-DYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTS 239 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y A T TGRL+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH++ Sbjct: 240 YHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLS 299 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L F DIHR AAE+FG+ ++ V+ + RR AK INF +IYG+S F L+ QL Sbjct: 300 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLN 359 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IPR EA Y+ YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S ++ R Sbjct: 360 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAG 419 Query: 883 NERAAINAPIQGSAADI 899 ERAAINAP+QG+AADI Sbjct: 420 AERAAINAPMQGTAADI 436 >gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275] gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275] Length = 891 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 201/575 (34%), Positives = 350/575 (60%), Gaps = 17/575 (2%) Query: 411 ISTLDQKDDTSFKVETIFIDL------SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLK 464 IS +++K + + KV T ++ ++ + D +++E + K E++ K Sbjct: 321 ISLINEKGEFALKVVTKVGNILEKNIICMYITLDGDKVFCVSEERIMDFKAVLESKDIKK 380 Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYT---RKE 519 G+N+K D + L Y I+++G DI + Y++DS ++ + +IA K+L + ++E Sbjct: 381 YGYNMKEDYVALMPYEIALKGMSFDIAIAEYLIDSTSTNTSECGAIAMKYLMKSVKSKEE 440 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 +L + + ++ ++ + N ++ ++ ++ K+ +++ ++ P+++V Sbjct: 441 LLGKGVKAKKFEDLTKEELSGYISSILNTVVNAMPKMKEEIESTKIEKLFDDVEMPLVEV 500 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 + ME TGI++D+++L ++ E +K + SLEE IY +GE+FN++SPKQLG ILF KL+ Sbjct: 501 LGNMEYTGIKVDKEMLDELGKEFTKIISSLEEEIYGYAGEEFNINSPKQLGVILFEKLEL 560 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 P KTKTG + T A+ LE++ +PII I E+RQ+ K+ STY + L IN R+ Sbjct: 561 PVIKKTKTG-YSTNAEVLEKLK-DKHPIIDKIGEYRQIVKLNSTYVEGLTALINPIDGRI 618 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 H+ ++ T TGR++S EPNLQNIP++ ++G+++R F+S K+L+ ADYSQ+ELR+LA Sbjct: 619 HSTFNQTITTTGRISSTEPNLQNIPVRMEIGRRLRAVFVSDDEKRLVDADYSQVELRVLA 678 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H++ + F++ DIHR A+++F V +E+V+ ++R AK +NF IIYG + F L+ Sbjct: 679 HMSGDQNMIDAFKHGEDIHRKTASQVFNVPVEEVTSELRSAAKAVNFGIIYGKTDFGLSE 738 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L IP +A YI+ YF ++ I E+++ ++GY +T+F RR + EI S Sbjct: 739 DLNIPVPQAKQYIESYFAKYEKIKEFMDNIIETAEKDGYSQTMFNRRRYIPEIKSKNFME 798 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN +RAA+NAPIQGSAADI + AM++V + LE +L +K++LQ+HDEL+ E P +E+ Sbjct: 799 RNRGKRAAMNAPIQGSAADIIKIAMVNVFRRLEKEELRSKLILQVHDELIVETPIDELEK 858 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I+ ME A ++++V L V++ +W E Sbjct: 859 VEKIVREEMENA----VDMKVALTVDLNTGVSWYE 889 Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 106/287 (36%), Positives = 163/287 (56%), Gaps = 9/287 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG+S I RAFYA P +GL NAI GF ML+K+++ +H +V F Sbjct: 11 RLIIIDGNSIINRAFYALPQTMDNKEGLHTNAIYGFTTMLFKMIEIYE----PTHISVAF 66 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR++ Y YKA R K+P+ L Q+ ++ AF I EI G+EADDII T + Sbjct: 67 DRKAPTFRHKEYSKYKAGRKKMPQELFEQMQPLKDLLDAFKIERFEIDGYEADDIIGTIS 126 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 AE++GF V I++ DKD +QL S T T K E+ + + VI+K+ + P + + Sbjct: 127 KAAEEDGFEVFIVTGDKDAIQLASNKTTTLITKKGVADVEEYNYDSVIEKYEMTPTQFID 186 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L+ L GD DNIPG+PG+G KT L++++G++EN++ + +K +++ E A Sbjct: 187 LKGLMGDKSDNIPGVPGVGEKTGIKLIKQFGSIENLVEHTDELKGSIKKKIEEN-KEEAI 245 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 S+ L + DVPI L+ ++ D +I + +FT LI +V Sbjct: 246 HSKWLATIVRDVPIEFDLDKMVFGDYKVEDVIEKFQFFKFTSLIKKV 292 >gi|329920128|ref|ZP_08276959.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G] gi|328936582|gb|EGG33026.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G] Length = 883 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 209/532 (39%), Positives = 327/532 (61%), Gaps = 24/532 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 L K E+++ K ++K + + L R I++ +DIML SY+ DS ++ D+ +A Sbjct: 364 LNKILEDKNIAKQVFDLKRNYVGLQRLDITLSNVTDDIMLASYIADSENNAGDLGVLANS 423 Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + + EI+ ++ S+ +D + H +V+ +L + P+L + L Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 H+Y+ ++ P+ ++++MEI GI++ L ++ ++ + L+ IY L+GEKFN++SP Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KLK KTKTG + T+ LE++ +PI+ +IL++RQ+SKI+STY + Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L ++I + ++HT + T TGRL+S+EPNLQNIP+K + G++IR+AF+ P K+ Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802 L S DYSQ+ELR+LAH++ + + F+ DIH A +IFG+ N+++V+P MRRHAK Sbjct: 654 YLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAK 713 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF I+YGIS + LA L I R EA ++I YF ++P I +Y++ R+ GY ETI Sbjct: 714 AVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETI 773 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 RR +I++ +IR+ ER AIN+PIQGSAADI + AMI + LE KL TKM+L Sbjct: 774 MHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMIL 833 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+F+VP EE+ ++ M++A L VPL + +NW E Sbjct: 834 QIHDELLFDVPSEELDLIKTLVPKIMQQAA----QLDVPLIADANWGHNWYE 881 Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L ++ D GL NAI F NML LL+N + +H Sbjct: 4 LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD +TFRN++Y DYK R K P L QLP+++ GI + E+ +EADDI Sbjct: 57 MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLTYLGIKSYELSNYEADDI 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 + T + GF VTI++ D+DL QL + T K+ D+E H+ + +G+ Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++AL GD+ DN PG+ +G KTA+ L+ +YG++EN+ +IK K +E ++ Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A L +KL + P+ + ++ + L+ +L SF + L F K ++ + + D Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295 >gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna. gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 10 Base Pairs Of Duplex Dna Following Addition Of A Single Dttp Residue gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 11 Base Pairs Of Duplex Dna Following Addition Of A Dttp And A Datp Residue. gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 15 Base Pairs Of Duplex Dna Following Addition Of Dttp, Datp, Dctp, And Dgtp Residues. gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 12 Base Pairs Of Duplex Dna Following Addition Of A Dttp, A Datp, And A Dctp Residue. gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site gi|47168381|pdb|1NJZ|A Chain A, Cytosine-Thymine Mismatch At The Polymerase Active Site gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After A Single Round Of Primer Extension, Following Incorporation Of Dctp. gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Two Rounds Of Primer Extension, Following Incorporation Of Dctp And Dgtp. gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Three Rounds Of Primer Extension, Following Incorporation Of Dctp, Dgtp, And Dttp. gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Five Rounds Of Primer Extension, Following Incorporation Of Dctp, Dgtp, Dttp, And Datp. gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Cytosine-Thymine Mismatch After A Single Round Of Primer Extension, Following Incorporation Of Dctp. gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A Benzo[a]pyrene Adduct That Blocks Replication gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As Yet Unnamed) Dna Polymerase Fragment Length = 580 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 196/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +NF I+ Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 417 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L +LLQ+HDEL+ Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576 >gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 11 Base Pairs Of Duplex Dna After Addition Of Two Datp Residues gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna Length = 580 Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 196/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +NF I+ Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 417 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L +LLQ+HDEL+ Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576 >gi|81429016|ref|YP_396016.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei 23K] gi|78610658|emb|CAI55709.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei 23K] Length = 886 Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 204/527 (38%), Positives = 324/527 (61%), Gaps = 17/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509 LK + E+ K +K ++ +R G+ + G + D++L SY+L++ +S+D+ ++A Sbjct: 365 LKDWLEDASHPKAVFGVKRTQVAANRLGVHLAGVDFDLLLASYLLNTTNNSNDLGTVANL 424 Query: 510 QKWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ + E + K K ++P + + + +H ++ + I L L +L + Sbjct: 425 HEYQNVQTDEAVYGKGAKRAVPTEP---ALLYQHLVQKAAAIYHLQPQLEEQLKEHQQFD 481 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ ++ P+ V++QMEITGI++D L+Q+ +E S+ L LEE +Y +GE FN++SPK Sbjct: 482 LFTDMELPLALVLAQMEITGIRVDASRLQQMGSEFSQTLKILEEKVYAEAGETFNINSPK 541 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF K+ P KTKTG + T LEQ+ D PI++ IL++RQ++KI+STY + Sbjct: 542 QLGVILFEKMGLPVVKKTKTG-YSTAVDVLEQLRK-DAPIVQTILDYRQIAKIQSTYVEG 599 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L I++ +VHT Y T TGRL+S++PNLQNIP++ G+KIR+AF+ S P ++ Sbjct: 600 LLKSIHQDN-KVHTRYLQTLTQTGRLSSVDPNLQNIPVRLAEGRKIRQAFVPSHPDWQMF 658 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTIN 805 ++DYSQIELR+LAHI+ + + F+ DIH A +IFG+N ++V+P MRR AK N Sbjct: 659 ASDYSQIELRVLAHISGDANMQEAFKEDRDIHANTAMKIFGLNSADEVTPDMRRQAKATN 718 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ + I R EA +I YF ++PG+ +++ R+ GYVET+F R Sbjct: 719 FGIVYGISDYGLSQNIGISRQEAKRFIDAYFEQYPGVQQFMVDIVKKAREEGYVETLFHR 778 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ ++R+ ER A+N PIQGSAADI + AMI + + L+ L +MLLQ+H Sbjct: 779 RRYLPDIHAKNFNLRSFAERTAMNTPIQGSAADIIKVAMILMQQELKKANLQARMLLQVH 838 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+FE P EEI +++ M+ A + L VPLKV W Sbjct: 839 DELIFEAPTEEIPILQKLVPSVMDSA----VKLAVPLKVESGFGPTW 881 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 115/319 (36%), Positives = 168/319 (52%), Gaps = 13/319 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLL---SRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + L L+DG+S +RAFYA + DGL NAI F NML +L K Sbjct: 1 MGSQKSLLLIDGNSVAFRAFYAMHQVLDSFTNQDGLHTNAIYAFKNMLDIIL----KRFE 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR + DYK R K P L Q P ++ A+GI E+ +EA Sbjct: 57 PTHVLVAFDAGKTTFRTAQFADYKGGRSKTPPELTEQFPYIKELLHAYGIQTAELANYEA 116 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWG 173 DDII T AE++GF V I++ D+DL QL + T + TVK E EHV +K G Sbjct: 117 DDIIGTLASQAEQDGFVVNIVTGDRDLTQLTTDKTTVNITVKGVNDTEAYTPEHVQEKLG 176 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 + P ++V L+ L GD+ DN PG+ +G KTA LL E+G++E + N +K+ K +E++ Sbjct: 177 LAPSQIVDLKGLMGDTSDNYPGVTKVGEKTALKLLTEFGSIEGVYENVDAMKKSKMKEHL 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 +E + A +S+KL + D PI L + E N LI+F + + F + ++ T + Sbjct: 237 IEDRDQAFMSKKLATILRDAPIETTLADITYEGPNIDTLIAFYQEMNFQNFLKQLNVTPE 296 Query: 294 C--DAANIEPVVLDINTTE 310 A N + VL ++ E Sbjct: 297 AVEPAENYQYTVLTLDNLE 315 >gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905] gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905] Length = 875 Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 210/531 (39%), Positives = 322/531 (60%), Gaps = 22/531 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L+ + E+ +K + K + L R GI + G + D++L SY+ + G S D+A++A++ Sbjct: 356 LRCWLEDSSKIKYMSDSKASQAALKRAGIQLAGVDFDLVLASYINNPGLSGDDVATLARE 415 Query: 512 WLSYTRKE----ILKSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 Y + K K +IP IDK++ +H + + L L L + Sbjct: 416 LGYYDVQADETVYGKGAKRAIPEIDKLA-----QHVSRKAYAVWSLQPKLEALLKENEQF 470 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 +Y+ L+ P+ ++ +ME GI +++ L+++ E+++ L+ LE+ IY +GE FN++SP Sbjct: 471 DLYKDLELPLAAILGEMESEGITVNRATLEKMGQELNEKLVVLEQEIYAEAGETFNINSP 530 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KL P KTKTG + T A LE++ ++ II+ IL +RQL K++STY + Sbjct: 531 KQLGVILFDKLGLPVIKKTKTG-YSTAADVLEKLKS-EHAIIEYILLYRQLGKLQSTYIE 588 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L I+++ +VHT + A T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+ + Sbjct: 589 GLLKEIHEKDSKVHTRFQQALTATGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSNENW 646 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 L SADYSQIELR+LAH+++ L + F +D+H A ++F V+ ++V MRR AK Sbjct: 647 ILFSADYSQIELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKA 706 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R EAA +I +YF FPG+ +Y++ + NGYV TI Sbjct: 707 VNFGIVYGISDYGLSQNLDITRKEAATFIDKYFASFPGVKQYMDDIVQNAKFNGYVTTIL 766 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I S ++R+ ER A+N PIQGSAADI ++AMI + L+ + K+LLQ Sbjct: 767 NRRRYLPDITSSNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMDARLKKENMQAKLLLQ 826 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDEL+FE P+EEI +I+ ME A I L VPLKV+ + W E Sbjct: 827 VHDELIFEAPKEEIALLEKIVPEVMENA----IELSVPLKVDFNHGSTWYE 873 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 110/291 (37%), Positives = 160/291 (54%), Gaps = 10/291 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L L+DG+S YRAF+A PLL+ G+ NA+ GF ML ++L+ E + Sbjct: 1 MTKEK-LLLLDGNSLAYRAFFALPLLTN-DSGIHTNAVYGFTTMLQRILE----EEQPTQ 54 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R K P L Q P +R A+GI E +EADDI Sbjct: 55 ILVAFDAGKTTFRHETFTEYKGGRQKTPPELSEQFPYIRKLIDAYGIKQYEQDLYEADDI 114 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T A + V I+S D+DL QL + +Y T K E+ + +K+G+ P Sbjct: 115 IGTLAKEASSQDMDVIIVSGDRDLTQLATEQVTVYITKKGITEIERNTPAFIAEKYGLTP 174 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ ++ L GDS DNIPG+PG+G KTA LL+E+G++E + +K K +E ++ Sbjct: 175 LQIIDMKGLMGDSSDNIPGVPGVGEKTAVKLLKEHGSVEALYEAMDTLKASKMKEKLVAN 234 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 E A++S+KL + TD PITI L L N LI+ + L F L+ + Sbjct: 235 EEQAKMSKKLATIFTDAPITISLTDLAYHGPNEEELINVWRELGFKSLLEK 285 >gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K] gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K] Length = 897 Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 198/511 (38%), Positives = 298/511 (58%), Gaps = 9/511 (1%) Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKS 523 H++K L R G++ G ED LMS +L R H + +A++ S R + Sbjct: 391 HDLKAAAHALARLGLARSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRSPADGA 450 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 ++ + ++ + +V A + + L L L E+L +Y +++P++ V+ +M Sbjct: 451 KRGAPGLEGLEVERVAAWAGACAASLPDLAAKLAEGLEAERLSPLYREVERPLVPVLVEM 510 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E TGI +D+ ++ +SAE +++ LE I+ +G FN++S ++L +LF +L+ P Sbjct: 511 ERTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHPFNVASTRELAQVLFVELELPVVK 570 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 + KTG +T QD+ + + + + +LE R LSK+K TY D+LP ++ R+HT + Sbjct: 571 RLKTG--PSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTF 628 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 A TGRL+S +PNLQNIP++T+L ++IR+AF++P +L+SADYSQIELRILAH + Sbjct: 629 HQAGAATGRLSSSDPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSD 688 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L Q F + D+H AAE FGV E+V+P RR AK +NF I YG+S F L+ +L + Sbjct: 689 DPGLLQAFRDREDVHTRTAAETFGVAPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQRLDL 748 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 P SEA I RYF R+ G+ YIE R G T+FGR EI +P ++RN Sbjct: 749 PPSEAQGIIDRYFTRYAGVRRYIEWAVEEARAKGESRTLFGRARAMPEIGAPNPALRNAA 808 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER AIN PIQG+AADI + AMI VH +L + A ++LLQ+HDELV EVPE E+ + Sbjct: 809 ERTAINTPIQGTAADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELEPVEAL 868 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME A L+VPL+V + W E Sbjct: 869 VRREMEGAA----RLKVPLEVQVGHGQTWAE 895 Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 115/291 (39%), Positives = 162/291 (55%), Gaps = 16/291 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGS FI+RA++A P LS G+P NA+ GF NML K L +E +H A++ D Sbjct: 4 LTLIDGSGFIFRAYHAIPHLS-TTKGIPTNAVYGFTNMLLKAL----REHAPTHVALVLD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +FR++I P+YKANRP+ P+ L Q PLVR +A +P IE GFEADDIIAT Sbjct: 59 AGRRSFRHDIDPEYKANRPEAPDDLASQFPLVRDVARALNVPVIEEPGFEADDIIATLAG 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVC 181 A G+ V +++ DKD QLV LYD + E V KK G+ PE++V Sbjct: 119 RARAAGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGGWTGPAEVEKKMGVRPEQVVE 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILE 235 Q++ GD IDN+PGI G+G TAA L++ +G E +L I +K R+ ++ Sbjct: 179 YQSILGDKIDNVPGIAGVGEVTAAALIRHFGTAEAMLARPGEIPAAVSRGGEKLRDKVVA 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 AE R +R+LV LR D+ + E + R + LEF++L+ Sbjct: 239 NAERIRTNRRLVALRRDLDLPFAPEAFGRRPPDQERARALFSELEFSRLVK 289 >gi|312868776|ref|ZP_07728968.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3] gi|311095762|gb|EFQ54014.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3] Length = 885 Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 213/527 (40%), Positives = 323/527 (61%), Gaps = 16/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LKK E+ K N K + LHR GI +R + D++L SY+L++ +S+D+ +A + Sbjct: 364 LKKLLESPAVAKNVFNAKAQIVGLHRLGIDLRNVDFDLLLASYLLNTNDNSNDLGQVALE 423 Query: 512 WLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + T +E+ K K +IP D D H + + I L L KL + Sbjct: 424 HDYHEVATDEEVYGKGAKRAIPDD---DQTFYTHLAQKARAINDLRDPLFKKLDDNQQTP 480 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +Y ++ P+ V++ MEITGI+++ LK + +++++ L +E+ IY +GE+FN++S K Sbjct: 481 LYTEIEVPLTRVLAAMEITGIKVNSQTLKDMGSKLTERLADIEDQIYAAAGEEFNINSTK 540 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KLK P KTKTG +TA D+ + PI+++IL++RQ++K++STY Sbjct: 541 QLGHILFEKLKLPVIKKTKTGY--STAVDVLEKLADQAPIVEDILQYRQIAKLQSTYITG 598 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L I+ Q++HT Y T TGRL+S++PNLQNIP++ G+ IR+AF+ S ++ Sbjct: 599 LLKVIHSSDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHEGWQIF 658 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTIN 805 S+DYSQ+ELR+LAHI L + F+N DIH A IF + + ++ MRR AK +N Sbjct: 659 SSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVN 718 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + LA ++ + RS+A ++I+ YF FPG+ +YI+ T F R++GYVETI R Sbjct: 719 FGIVYGISDYGLAQRIHVSRSQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVETITHR 778 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ S R+ ER A+N PIQGSAADI + AMI + + ++ +L +MLLQIH Sbjct: 779 RRYLPDIHAKSFSRRSFAERTAMNTPIQGSAADIIKIAMIRMKEEIKQRQLQARMLLQIH 838 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DELVFE P EEI +++ M+ A + L VPLKV KV + W Sbjct: 839 DELVFEAPAEEIPVLQKLVPQVMDSA----VQLNVPLKVESKVGDTW 881 Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 163/303 (53%), Gaps = 11/303 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S ++RAF+A K DGL AI GF ML +L ++ V Sbjct: 5 LLLIDGNSIVFRAFFAMHNQIDKFTNKDGLHTAAIYGFKLMLDHVLDKFHPDAAL----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y DYK R K P+ L Q P VR +A G+ + E++ +EADDII T Sbjct: 61 AFDAGKVTFRTKMYDDYKGGRNKTPDELTEQFPYVRELVEACGLHSYELKNYEADDIIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179 ++ G+ I++ D+DL QL S T + T K E HV +K GI P ++ Sbjct: 121 LAKEGDEAGYETLIVTGDRDLTQLASDHTTVAVTHKGVTDTEHYTPAHVEEKLGITPRQI 180 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GDS DN PG+ IG KTA L++++G++EN+ + +K+ K +E+++E E Sbjct: 181 IDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVENLYDHIDDLKKSKMKEHLVEDEEI 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 AR + L + D P+ I L+ + +L++F + + F + ++ + A + Sbjct: 241 ARQCKTLATILQDAPLEISLDDIAYRGEQTEKLVAFYQQMGFKSFLAKMDLAPEEGADDS 300 Query: 300 EPV 302 PV Sbjct: 301 APV 303 >gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis] Length = 871 Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 213/536 (39%), Positives = 331/536 (61%), Gaps = 24/536 (4%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDI 505 E L L++ FE E + H IK D LV Y GI + + D +M+Y+L+ S++D+ Sbjct: 345 ERLEDLREIFEREDCEFVSHEIK-DFLVKLSYKGIECKSKYLDTAIMAYLLNPSESNYDL 403 Query: 506 ASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL---WLLLRPK 559 + +K+L + +E+ K +++S+ + E+ N + +L + + Sbjct: 404 DRVLKKYLKVDVLSHEEVFGKGKDRRRYEEVSEEVMAEYICGRCNHLFELKDKLMSFIEE 463 Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 + ++KLL ++ P+++V+ ME+ G +D+++LK++S +I + + + + IY +G Sbjct: 464 MDMKKLLL---EIEMPLVEVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGY 520 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 +FN++SPKQLG+ LF KL P KTKTG + T ++ LEQ+ N I+ I+E+RQL+K Sbjct: 521 QFNVNSPKQLGEFLFEKLNLPVIKKTKTG-YSTDSEVLEQLTAY-NDIVSEIIEYRQLTK 578 Query: 680 IKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 +KSTY + LP + RVH+ + TGR++S EPNLQNIP++ + G++IRRAFI Sbjct: 579 LKSTYIEGFLP--LMDENDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFI 636 Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 P TK ++SADYSQIELR+LAH+++ L + F N+ DIH A+E+F V + V+P+ Sbjct: 637 -PRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPE 695 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 MRR AK +NF IIYGIS + LA L+I R EA +YI YF ++ G+ EYIEK F ++N Sbjct: 696 MRRAAKVVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKEN 755 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GYV TI RR + EINS + R+ ER A+N PIQGSAADI + AM+ V++ + L Sbjct: 756 GYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNL 815 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++++LQ+HDELV + ++E+ +I+ +ME I L+VPL V I V NW Sbjct: 816 KSRLILQVHDELVVDTYKDELELVKEILKENMENV----IKLKVPLVVEIGVGPNW 867 Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 110/286 (38%), Positives = 174/286 (60%), Gaps = 10/286 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+DGSS +YRA+YA P+L+ +GL NA+ GF ML KLL+ + + A+ FD Sbjct: 4 FLLIDGSSLMYRAYYALPMLT-TSEGLHTNALYGFTMMLIKLLEEEK----PDYVAIAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ + +YKA R +PE L Q+ L++ F I +E++G+EADDII T + Sbjct: 59 KKAPTFRHKEFKEYKATRQAMPEELSEQVELLKEVIDGFNIKTLELEGYEADDIIGTVSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 +AE++G V I++ D+D +QL+SP + + K E+ D + V++++ I P++ V L Sbjct: 119 MAEEKGMEVVIVTGDRDALQLISPRVKVKISKKGITQMEEFDEKAVLERYEITPQQFVDL 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPGIP IG KTA LL+E+G++EN+L N S++ K +E I E A + Sbjct: 179 KGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLENISKL-SGKIKETIEANRELAVM 237 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 S++L + ++P+ I E L++ N +L LEF L++ + Sbjct: 238 SKRLATINRNIPLEIDFEEYRLKEFNYKKLWDLFNKLEFYSLLDSI 283 >gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I Length = 876 Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 196/479 (40%), Positives = 306/479 (63%), Gaps = 15/479 (3%) Query: 499 GRSSHDIASIAQ--KWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554 +++ D+A++A+ ++ + E + K K ++P + + EH + + I L Sbjct: 404 AQAAGDVAAVAKMHQYEAVRSDEAVYGKGAKRTVP----DEPTLAEHLVRKAAAIWALEE 459 Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614 L +L + + L++P+ +++ ME TG+++D L+Q+ AE+++ L ++E IY Sbjct: 460 PLMDELRRNEQDRLLTELEQPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIY 519 Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674 +L+G++FN++SPKQLG +LF KL+ P KTKTG + T+A LE++ + I+++IL + Sbjct: 520 ELAGQEFNINSPKQLGTVLFDKLQLPVLKKTKTG-YSTSADVLEKL-APHHEIVEHILHY 577 Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734 RQL K++STY + L ++ T +VHT ++ A T TGRL+S+EPNLQNIPI+ + G+KIR Sbjct: 578 RQLGKLQSTYIEGLLKVVHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIR 637 Query: 735 RAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 +AF+ S P + +ADYSQIELR+LAHIA+ L + F LDIH A +IF V+ E V Sbjct: 638 QAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEEDV 697 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 + MRR AK +NF I+YGIS + LA L I R EAA++I+RYF FPG+ +Y++ Sbjct: 698 TANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQEA 757 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 +Q GYV T+ RR + +I S ++R+ ER A+N PIQGSAADI ++AMI + L + Sbjct: 758 KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLSVRLRE 817 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +L ++LLQ+HDEL+ E P+EEI +++ ME+A + LRVPLKV+ W Sbjct: 818 ERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQA----VTLRVPLKVDYHYGPTW 872 Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 119/294 (40%), Positives = 177/294 (60%), Gaps = 9/294 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L E +H V Sbjct: 2 KNKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEQPTHILV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E + DYK R + P L Q PL+R +A+ IPA E+ +EADDII T Sbjct: 57 AFDAGKTTFRHETFQDYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 AE+EGFAV +IS D+DL QL SP + T K E E V++K+G+ PE++ Sbjct: 117 MAARAEREGFAVKVISGDRDLTQLASPQVTVEITKKGITDIESYTPETVVEKYGLTPEQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +EN+ +Y + Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQYRDL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 A LS++L + D P+ + L+ ++ + + ++++ + L F ++++A D Sbjct: 237 ALLSKQLAAICRDAPVELTLDDIVYKGEDREKVVALFQELGFQSFLDKMAVQTD 290 >gi|122920458|pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0 Position) gi|122920459|pdb|2HVH|D Chain D, Ddctp:o6meg Pair In The Polymerase Active Site (0 Position) gi|122920465|pdb|2HVI|A Chain A, Ddctp:g Pair In The Polymerase Active Site (0 Position) gi|122920466|pdb|2HVI|D Chain D, Ddctp:g Pair In The Polymerase Active Site (0 Position) gi|266618524|pdb|3EZ5|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna , Dctp, And Zinc (Closed Form). gi|266618525|pdb|3EZ5|D Chain D, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna , Dctp, And Zinc (Closed Form) Length = 580 Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 195/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 298 VVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +N+ I+ Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIV 417 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L +LLQ+HDEL+ Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576 >gi|122920421|pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active Site, In The Closed Conformation gi|122920422|pdb|2HHW|D Chain D, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active Site, In The Closed Conformation Length = 580 Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 195/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 298 VVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +N+ I+ Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIV 417 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L +LLQ+HDEL+ Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576 >gi|260665506|ref|ZP_05866353.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US] gi|260560774|gb|EEX26751.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US] Length = 885 Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 213/552 (38%), Positives = 343/552 (62%), Gaps = 28/552 (5%) Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIM 490 +V+ S D + LTK+ L L E++ K ++K + LHR GI D++ Sbjct: 351 NVYVSNDVS---LLTKQPLQTL---LEDQAVNKNVFDLKRTIVGLHRLGIKANNINYDML 404 Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENS 546 L SY++++ +S+D+ I Q + Y + + K +K++IP ++I + + + Sbjct: 405 LASYLVNNENNSNDLGEICQLYNYYDLQPDVDIYGKGKKAAIPDEEIFFNHLAGKVL--- 461 Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 I L L +L + +YE ++ P+ +V+++MEITG++ D L Q+ + + L Sbjct: 462 -AIEALKPTLLKRLTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFGQRL 520 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666 LE +IY +GE+FN++SPKQLG ILF KL+ P KTKTG + T+ + LEQ+ +P Sbjct: 521 TELEADIYLEAGERFNINSPKQLGQILFEKLELPPIKKTKTG-YSTSVEVLEQLK-DQSP 578 Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 I++ +L++RQ++KI+STY L + I + RVHT Y T TGRL+S++PNLQNIP++ Sbjct: 579 IVQKVLDYRQIAKIQSTYVKGLLDVI-QPDGRVHTRYQQTLTATGRLSSVDPNLQNIPVR 637 Query: 727 TDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 + G+KIR+AFI P+ K + S DYSQ+ELR+LAH++ + + F+ DIH A Sbjct: 638 LEEGKKIRKAFI--PSNKDGYIFSCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAM 695 Query: 784 EIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +IF ++ ++V+P MRRHAK +NF I+YGIS + L+ L I R +A ++I YF ++P I Sbjct: 696 KIFHLDSPDEVTPNMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKEFIDNYFEQYPKI 755 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y++K NF R+ GYVETI RR + +I++ ++R+ ER AIN+PIQG AADI + Sbjct: 756 KDYMDKEINFAREKGYVETIMHRRRYLPDIHAKNFNVRSFAERTAINSPIQGGAADIIKI 815 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI++ K L++ L +KML+Q+HDEL+F+VP +E+ T +++ M+ A ++L VPL Sbjct: 816 AMINMQKKLDELNLKSKMLIQVHDELIFDVPADELETIKKVVPEVMQNA----VHLDVPL 871 Query: 963 KVNIKVSNNWQE 974 + ++W E Sbjct: 872 VADSNWGHDWYE 883 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 110/289 (38%), Positives = 165/289 (57%), Gaps = 17/289 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L R+ D GL NAI F NML +L K+ SH Sbjct: 6 LLLIDGNSVAFRAFYA---LYRQLDRFQNPEGLHTNAIYAFKNMLDVIL----KQENPSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD VTFR ++Y DYK R K P LL Q+P ++ + GI + E+ +EADDI Sbjct: 59 VLVAFDAGKVTFRTKLYSDYKGGRQKTPGELLEQIPYIKEMLKDLGIKSYELVNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKE-EKIDIEHVIKKWGIPP 176 I TY+ + E+ G+ V I+S DKDL QL S +T +Y T V E E EH+ + G+ P Sbjct: 119 IGTYSKMGEEAGYQVAIVSGDKDLTQLASDSTTVYVTKSGVSELEAFTPEHMKEVNGVTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + ++AL GD+ DN PG+ +G KTA+ L+Q+YG++ENI + +K+ K +EN++ Sbjct: 179 TEFIDMKALMGDNSDNYPGVTKVGPKTASNLIQKYGSVENIYKHIDEMKKSKLKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 + A L++ L + P+ L+ L ++ N L F + + F + + Sbjct: 239 KDKAFLAKTLATIDRTSPVEFKLDELKKQETNVVDLRKFYEQMNFRRFL 287 >gi|299688922|pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus F710y Mutant Bound To G:t Mismatch gi|299688923|pdb|3HP6|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus F710y Mutant Bound To G:t Mismatch Length = 580 Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 195/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 298 VVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +N+ I+ Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIV 417 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L +LLQ+HDEL+ Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576 >gi|266618521|pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna (Open Form) Length = 580 Score = 367 bits (942), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 195/463 (42%), Positives = 297/463 (64%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +N+ I+ Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIV 417 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 418 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L +LLQ+HDEL+ Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576 >gi|259503619|ref|ZP_05746521.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041] gi|259168443|gb|EEW52938.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041] Length = 885 Score = 367 bits (942), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 212/527 (40%), Positives = 322/527 (61%), Gaps = 16/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LKK E+ K N K + LHR GI +R + D++L SY+L++ +S+D+ +A + Sbjct: 364 LKKLLESPAVAKNVFNAKAQIVGLHRLGIDLRNVDFDLLLASYLLNTNDNSNDLGQVALE 423 Query: 512 WLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + T +E+ K K +IP D D H + + I L L KL + Sbjct: 424 HDYHEVATDEEVYGKGAKRAIPAD---DQVFYTHLAQKARAIDDLRAPLFKKLDDNQQTP 480 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +Y ++ P+ V++ MEITGI+++ LK + +++++ L +E IY +GE+FN++S K Sbjct: 481 LYTDIEVPLTRVLAAMEITGIKVNAQTLKDMGSKLTERLADIESQIYAAAGEEFNINSTK 540 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KLK P KTKTG +TA D+ + PI+++IL++RQ++K++STY Sbjct: 541 QLGHILFEKLKLPVIKKTKTGY--STAVDVLEKLADQAPIVEDILQYRQIAKLQSTYITG 598 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L I+ Q++HT Y T TGRL+S++PNLQNIP++ G+ IR+AF+ S ++ Sbjct: 599 LLKVIHSSDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRLPEGRLIRKAFVPSHAGWQIF 658 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTIN 805 S+DYSQ+ELR+LAHI L + F+N DIH A IF + + ++ MRR AK +N Sbjct: 659 SSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVN 718 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + LA ++ + R++A ++I+ YF FPG+ +YI+ T F R++GYVETI R Sbjct: 719 FGIVYGISDYGLAQRIHVSRAQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVETITHR 778 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ S R+ ER A+N PIQGSAADI + AMI + + ++ +L +MLLQIH Sbjct: 779 RRYLPDIHAKSFSRRSFAERTAMNTPIQGSAADIIKIAMIRMKEEIKQRQLQARMLLQIH 838 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DELVFE P EEI +++ M+ A + L VPLKV KV + W Sbjct: 839 DELVFEAPAEEIPVLQKLVPQVMDSA----VQLNVPLKVESKVGDTW 881 Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 102/303 (33%), Positives = 160/303 (52%), Gaps = 11/303 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S ++RAF+A K DGL AI GF ML +L ++ V Sbjct: 5 LLLIDGNSIVFRAFFAMHNQIDKFTNKDGLHTAAIYGFKLMLDHVLDQFHPDAAL----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y DYK R K P+ L Q P VR +A G+ + E++ +EADDII T Sbjct: 61 AFDAGKVTFRTKMYDDYKGGRNKTPDELTEQFPYVRELVEACGLHSYELKNYEADDIIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKM 179 ++ G+ I++ D+DL QL S T + T K E HV +K GI P ++ Sbjct: 121 LAKEGDEAGYETLIVTGDRDLTQLASDHTTVAVTHKGVTDTEHYTPAHVEEKLGITPRQI 180 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GDS DN PG+ IG KTA L++++G++EN+ + +K+ K +E+++E Sbjct: 181 IDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVENLYDHIDELKKSKMKEHLVEDEAI 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 AR + L + D P+ I L+ + L++F + + F + ++ + A Sbjct: 241 ARECKTLATILQDAPLEIGLDDITYRGEQTEELVAFYQQMGFKSFLAKMDLAPEEKADKS 300 Query: 300 EPV 302 PV Sbjct: 301 APV 303 >gi|308068368|ref|YP_003869973.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681] gi|305857647|gb|ADM69435.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681] Length = 884 Score = 367 bits (942), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 204/518 (39%), Positives = 318/518 (61%), Gaps = 18/518 (3%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTR--KE 519 K GH++ L LH +GI G E D+ L Y+LD ++ ++ +A K+ LS R +E Sbjct: 376 KRGHDLHRTDLALHWHGIEFAGAEFDVQLAGYLLDPTDANQTLSGLAAKYGLSSIRPDEE 435 Query: 520 IL-KSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 + K K +P +D +SD H + VI L + + +L ++ ++ L+ P+ Sbjct: 436 VFGKGAKYKVPDVDVLSD-----HVARKAAVIEALVPVQQAELEKTEMHKLFHELEMPLS 490 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 +++ ME G+ ++ + L+ + E + +L IY ++G +FNL+SPKQLG+ILF KL Sbjct: 491 RILADMEKQGVLVNVEELRALGKEFEAQIATLVSEIYSIAGVEFNLNSPKQLGEILFDKL 550 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 P KTKTG + T A+ LE++ + I++NIL++R ++K++STY + L I+ +T Sbjct: 551 GLPVIKKTKTG-YSTDAEVLEKL-APYHDIVQNILQYRTIAKLQSTYVEGLLKEISGKTG 608 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELR 756 +VHT++ TGRL+S PNLQNIPI+ + G+KIR+ F+ S P +++ADYSQIELR Sbjct: 609 KVHTYFRQTVAATGRLSSQFPNLQNIPIRLEEGRKIRKVFVPSEPGWSILAADYSQIELR 668 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +LA I+ L + F + +DIH A+++FGV E V MRR AK +NF I+YGIS + Sbjct: 669 VLADISDDERLKEAFVHDMDIHTKTASDVFGVAAEDVDSNMRRSAKAVNFGIVYGISDYG 728 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ L I R EAA +I +YF F G+ Y++ +++GYV+T+ RR + EIN+ Sbjct: 729 LSQNLNITRKEAARFIDQYFDVFQGVRRYMDDIVKDAKRDGYVKTLLERRRYLPEINASN 788 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 ++R+ ER A+N PIQG+AADI + AM+ + K L + L ++MLLQ+HDELVFEVP EE Sbjct: 789 FNLRSFAERTAMNTPIQGTAADIIKLAMVQMDKVLRERNLRSRMLLQVHDELVFEVPPEE 848 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + T +++ +ME A + L VPLK + +NW E Sbjct: 849 METMKELVPATMEAA----LELAVPLKAEVSYGSNWYE 882 Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 115/312 (36%), Positives = 173/312 (55%), Gaps = 17/312 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG+S IYRAF+A P L+ G NA+ GF ML +LL+ + +H V Sbjct: 2 DKLMLIDGNSIIYRAFFAMPPLTNS-SGQQTNAVYGFTTMLLRLLEEHK----PTHILVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD +TFR++ Y DYK R K P L Q PL++ AFGI E+ G+EADDII T Sbjct: 57 FDAGKITFRHKGYEDYKGGREKTPPELSQQFPLLKELLTAFGIAQFELDGYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 + A++ GF V I++ DKD++QL S + T K E E + +++G+ P +++ Sbjct: 117 SKTADEAGFNVLIVTGDKDMLQLASDHVTVGLTRKGVTEVETYGPEQIQERYGLKPLQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+ L GD+ DNIPGIPG+G KTA LL +YG++E +L + + +K K +E + +A+ A Sbjct: 177 DLKGLMGDTSDNIPGIPGVGEKTALKLLHQYGSVEEVLAHTNELK-GKMKERVETHADDA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-------ATTYD 293 R+S+ L + DV + L+ + L LEF L+ R+ +T D Sbjct: 236 RMSKDLATIYRDVTLDKQLDDVAFGGLQAETAGPALAKLEFKSLLERLSFSGEVGSTGVD 295 Query: 294 CDAANIEPVVLD 305 + A + VLD Sbjct: 296 VEEAAADVTVLD 307 >gi|325265069|ref|ZP_08131796.1| DNA polymerase I [Clostridium sp. D5] gi|324029759|gb|EGB91047.1| DNA polymerase I [Clostridium sp. D5] Length = 871 Score = 367 bits (941), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 194/487 (39%), Positives = 298/487 (61%), Gaps = 22/487 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ + +Y+L+ ++++D +A++ L + ID+ +D V A + Sbjct: 405 DVTVAAYLLNPLKNNYDYEDVAREQLG-------------LMIDEKAD--VMTKACYEAY 449 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 LR K+ E + H++ ++ P++ + ME GIQ++ + LK ++ ++ Sbjct: 450 TAFAAVKPLRDKMQAEGMYHLFTDIEMPLVFTLFDMEQAGIQVEAEALKFYGEQLGGRIV 509 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 LE+ IY+++GE FN++SPKQLG +LF ++ P+G KTKTG + T A L+++ D P+ Sbjct: 510 ELEKEIYEMAGETFNINSPKQLGVVLFDHMQLPNGKKTKTG-YSTAADVLDKL-APDYPV 567 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 ++ ILE+RQL+K+KSTYAD L +I R+H ++ T TGR++S EPNLQNIP++ Sbjct: 568 VEKILEYRQLTKLKSTYADGLAVYIGA-DGRIHGKFNQTITATGRISSTEPNLQNIPVRM 626 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 +LG+ IR+ F+ I ADYSQIELRILAH + L Q ++++ DIHRM A+++F Sbjct: 627 ELGRLIRKVFVPKEGYVFIDADYSQIELRILAHCSGDEQLIQAYKDARDIHRMTASQVFH 686 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 E+V+ RR+AK +NF I+YGIS F L+ L I R EAA YI+ YF +PGI +++ Sbjct: 687 TPFEEVTELQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAQYIENYFETYPGIKRFLD 746 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 T ++ GYV T+FGRR E+ S RN ER A+NAPIQGSAADI + AMI V Sbjct: 747 DTVAHAKEEGYVVTLFGRRRPVPELKSSNFMQRNFGERVAMNAPIQGSAADIMKIAMIGV 806 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 ++ L++ L ++M+LQ+HDEL+ E EEI +I+ ME+A +L VPL V++ Sbjct: 807 NRELKEKGLRSRMILQVHDELLIEAHREEIGEVQEILKRQMEQAA----DLDVPLIVDMH 862 Query: 968 VSNNWQE 974 NW E Sbjct: 863 TGENWYE 869 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 103/287 (35%), Positives = 162/287 (56%), Gaps = 11/287 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ +GL NAI GF N+++K+L + E + V FD Sbjct: 5 IVLIDGHSILNRAFYGVPDLTNS-EGLHTNAIYGFLNIMFKILDEEKPE----YLTVTFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+E+Y DYK R + E L Q+P+++ QA I IE G EADD++ T ++ Sbjct: 60 VHAPTFRHEMYADYKGTRKPMAEELRQQVPVIKEVLQAMNIEIIEQAGLEADDLLGTISH 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIE-----HVIKKWGIPPEKMV 180 I E++G V IIS D+D +QL + + K+ + ++E V +K+G+ P + + Sbjct: 120 ICEEKGMDVAIISGDRDTLQLATEHVKIRIPKTKQGRTEVEDYYAADVKEKYGVTPTEFI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++AL GD+ DNIPG+PG+G KTA ++ EYG +EN +A IK + +N+ EY + A Sbjct: 180 DVKALMGDASDNIPGVPGVGEKTATKIIVEYGTIENAYAHAEEIKPPRASKNLQEYWDQA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 +S+ L + T I LE + + + L+F L++R Sbjct: 240 CMSKTLATINTHADIAFNLEAAEHGNPYTKEAHDYFQRLQFKNLLSR 286 >gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10] Length = 887 Score = 367 bits (941), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 211/527 (40%), Positives = 325/527 (61%), Gaps = 17/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 +K E+E K ++K + HR GI G + D++L SY++++ +S+D+ IA Sbjct: 367 IKHILEDEKIKKNVFDLKRSMVGAHRLGIHTHGLDYDMLLASYLVNNENNSNDLGEIAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K + IP D D ++ H N I L L KL + Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKVNAIESLKKTLLEKLKDHEQDD 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ ++ P V+++MEI G++++ L Q+ E + L LE+ IY +GE+FNL+SPK Sbjct: 484 LFDTIEIPTARVLAKMEINGMKVEASTLIQLQNEFAVKLQDLEKKIYQQAGEEFNLNSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + L+Q+ +PI+K IL++RQ++KI+STY Sbjct: 544 QLGHILFEKLGLPVLKKTKTG-YSTSVEVLDQLKT-QSPIVKEILDYRQIAKIQSTYVKG 601 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + I + RVHT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P + Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSDPDGYIF 660 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S DYSQ+ELR+LAH++ + + F+ DIH A +IF ++ +KV+P MRRHAK +N Sbjct: 661 SCDYSQVELRVLAHVSGDVHMQEAFKTGYDIHSHTAMKIFHLDSPDKVTPLMRRHAKAVN 720 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R +A ++I YF ++P I +Y++K R+ GY ETI R Sbjct: 721 FGIVYGISDYGLSKNLGISRKQAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHR 780 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ K ++R ER AIN+PIQGSAADI + AMI++ K L++ L TKM++Q+H Sbjct: 781 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVH 840 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883 Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 122/331 (36%), Positives = 181/331 (54%), Gaps = 21/331 (6%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L S K DGL NAI F NML LL K+ +H V Sbjct: 6 LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y +YK R K PE LL Q+P ++ GI E++ +EADDII T Sbjct: 62 AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + EK GF TI++ D+DL QL S T + T + E EH+ + G+ P + Sbjct: 122 FAAKGEKAGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+ + +K+ KR+E ++ + Sbjct: 182 IDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRDKDK 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298 A L++KL + D P+TI ++ + E + +L F + + F K + + A+ D A Sbjct: 242 AFLAKKLATIDRDSPVTIDIDDVKREPVDYEKLWQFYEKMNFRKFLAELNASGAGQDGAE 301 Query: 299 IEPV---------VLDINTTENKGIAIETEI 320 +E V V D+ TE + E+ Sbjct: 302 VEKVEYTVLNDDNVKDVKATEKDTVEFYLEM 332 >gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442] gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442] Length = 877 Score = 367 bits (941), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 202/528 (38%), Positives = 321/528 (60%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 KK+ ++ K + K + L GI ++G + D+++ +Y+LD + D ++A+ Sbjct: 358 FKKWLADDEMRKYTFDAKRAIVALKWKGIEIQGIDFDLLIAAYLLDPADTDKDFRAVAKM 417 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P I V EH +V+ + +L + Sbjct: 418 KETHAVKSDEEVYGKGAKRAVPAQDI----VAEHVARKVHVLYDVQKTFVEELQKNEQYE 473 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V+++ME+ G+ +D + L+ + E++ L +E+ IY+L+G +FN++SPK Sbjct: 474 LFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELAGTEFNINSPK 533 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II IL +RQL K+ STY + Sbjct: 534 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MEHHEIIPKILHYRQLGKLNSTYIEG 591 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AFI P+K+ Sbjct: 592 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFI--PSKEGWV 649 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIAK L + F++ +DIH A ++FGV ++V+ MRR AK + Sbjct: 650 MYAADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 709 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R A ++I++YF FPG+ EY+++ +Q GYV T+ Sbjct: 710 NFGIVYGISDYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTLLN 769 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQGSAADI ++AMI + LE+ L ++LLQ+ Sbjct: 770 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 829 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FEVP+EE+ +++ ME A I L VPLKV+ W Sbjct: 830 HDELIFEVPKEEVEKLEKLVPEVMEHA----IELAVPLKVDYSSGPTW 873 Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 176/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ + +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTFSEYKGGRQKTPPELSEQFPFIRELLDAFHVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G V +IS DKDL+QLVS TT C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEANEQGAHVKVISGDKDLLQLVSDTTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++ +E + N ++ KK +EN+ E Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDKVSGKKLKENLEMNKEQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S++L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 237 AFMSKELATIITDAPITVHVDDIEYKGYEASDVIPMFENLGFTSLLNKLGATPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDISFDI 304 >gi|167464951|ref|ZP_02330040.1| DNA polymerase I [Paenibacillus larvae subsp. larvae BRL-230010] Length = 884 Score = 367 bits (941), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 201/508 (39%), Positives = 313/508 (61%), Gaps = 16/508 (3%) Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527 +L L GI +RG D++L SY+LD S+ ++ +A K+ L + K K Sbjct: 385 QLALSWKGIKLRGVSFDVLLASYLLDPTESTLTLSGVAGKYSVASLPADEQVFGKGAKFK 444 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 +P + + + E+ + + +L +L+ KL + +Y L+ P+ V+++ME+ G Sbjct: 445 LPEEHL----LGENLSLKAERVSRLVPVLKAKLEESGMQELYYELEHPLAGVLAEMELAG 500 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I++D++ LKQ+ EIS L ++ + IY+ +G FN++SPKQLG++LF KL+ P KTKT Sbjct: 501 IKVDKESLKQLGTEISDQLKTIMDRIYEQAGMTFNINSPKQLGEVLFEKLQLPVQKKTKT 560 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G + T A+ LE++ + I+ +IL +R L+K++STY + L + T +VHT+Y Sbjct: 561 G-YSTDAEVLEKL-APYHDIVGDILHYRTLAKLQSTYVEGLLKEVRPDTGKVHTYYRQTI 618 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITP 766 TGRL+S PNLQNIPI+ + G+KIR+ F+ S P +++ADYSQIELR+LAHI+ Sbjct: 619 AATGRLSSQYPNLQNIPIRLEEGRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEK 678 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F +DIH A ++FGV+ +V MRR AK +NF I+YGIS + L+ L I R Sbjct: 679 LKEAFVKDMDIHTKTAMDVFGVSEAEVDANMRRSAKAVNFGIVYGISDYGLSQNLGITRK 738 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA+ +I++YF F G+ Y++ + GYV T+ RR + EIN+ ++R+ ER Sbjct: 739 EASRFIEQYFSVFRGVRNYMDSIIREAKTQGYVTTLLQRRRYLPEINASNYNLRSFAERT 798 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 A+N PIQG+AADI + AM+ + + L+ KL + MLLQ+HDEL+FEVPE+E+ T +++ Sbjct: 799 AMNTPIQGTAADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPE 858 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME+A + L VPLKV + NW E Sbjct: 859 VMEQA----LALDVPLKVEVDEGENWYE 882 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 116/287 (40%), Positives = 176/287 (61%), Gaps = 12/287 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DG+S RAFYA PLLS GL NA+ GF ML +L++ + +HF V FD Sbjct: 4 LIIIDGNSIANRAFYALPLLSNS-SGLHTNAVYGFTTMLLRLIEEEK----PTHFLVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 VTFR++ Y +YK R K P L Q PL++ AFGI E++G+EADDII T T Sbjct: 59 AGKVTFRHKEYKEYKGGRAKTPSELSEQFPLIKELLNAFGIRQFELEGYEADDIIGTLTR 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181 A+++ V ++S DKD++QL S + T K ++EH + +K+G+ PE+++ Sbjct: 119 AADEKKKHVMLVSGDKDMLQLASDYVTVAITRKGIS-EVEHYGPKEIEEKYGLKPEQIID 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GDS DNIPGIPG+G KTA LL EYG++E++L +A +K K +E + E A+ AR Sbjct: 178 MKGLMGDSSDNIPGIPGVGEKTALKLLHEYGSVESVLEHADELK-GKMKEKVKENADLAR 236 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +S++L + +VP++ + L+ E GP+L + LEF L+ ++ Sbjct: 237 MSKELATIFREVPMSTEWDELVYEGYEGPKLQEMFRKLEFKSLLEKL 283 >gi|227505032|ref|ZP_03935081.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940] gi|227198396|gb|EEI78444.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940] Length = 863 Score = 367 bits (941), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 283/964 (29%), Positives = 468/964 (48%), Gaps = 116/964 (12%) Query: 17 YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75 +RAFYA P + G NA+ GF +ML ++ + E + V FD TFR E Sbjct: 3 FRAFYALPAENFATSGGQHTNAVYGFLSMLANIIAEEKPE----YVGVAFDVGRKTFRTE 58 Query: 76 IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135 ++P+YKA R PE Q+ L+R GI + + FEADDI+AT A F Sbjct: 59 MFPEYKAQREAAPEEFRGQVDLIREVLGTLGITTLSRENFEADDIVATLATQATD--FET 116 Query: 136 TIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIP 194 I++ D+D +QLV+ TT LY P + L T D++ Sbjct: 117 LIVTGDRDYLQLVNEDTTVLY-------------------PMRGVSTLHRFTPDAVVEKY 157 Query: 195 GIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVP 254 G+ Y A L G+ + L + ++ +K + ILEY L Sbjct: 158 GLTPRQYPDFAAL---RGDPSDNLPSVPKVGEKTATKWILEYGSLEGL------------ 202 Query: 255 ITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDINTTENKGI 314 +EH ED G +F +E ++ NR T D ++E D+ + KG Sbjct: 203 ----IEHA--EDIKGVAGQNFRDRIEQVRM-NRKLTQMITDM-DLEVTPADL---QFKGA 251 Query: 315 AIETEIDRDTTIKTSQF--SSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIV 372 A+ +R ++ + D E Q ++ P T+IV Sbjct: 252 AVSEVAERFDALEFGGGLRERVLDAIPNDGGEAPAQ----------TEVPTQE---TEIV 298 Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432 + ++QW++ K +A+ + D + D +D Sbjct: 299 DAP-LKQWLKG--------------------KKDVAVFVQG-DGRPDRGDASAIALVDAD 336 Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIML 491 H Q G+ L+ E + L ++ N K H K +L GI +RG D + Sbjct: 337 FHGMQLELGE--LSAEDDAALAQWL-NSDAPKYFHEAKAAFHMLAGRGIELRGIAHDTAI 393 Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551 +Y+L G+ +++++ + Q+ L T + +S + + D+ + ++ + I++ Sbjct: 394 AAYLLRPGQRTYELSDVYQRHLKKTLGQ------ASDQLSLLDDTSL----VDQAAAIME 443 Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611 L L +L +Y L+ P++ ++++ME TGI +D ++L+ + + E Sbjct: 444 LAAELTKQLQAIDSFELYTDLELPLVGILARMEATGIAVDVEILETQLDAFIEQVAEQER 503 Query: 612 NIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD-NPIIK 669 +L+G+ NL+SPKQL +LF + P KTKTG + T A+++EQ+ +P + Sbjct: 504 AARELAGDDSLNLNSPKQLQAVLFETFEMPKTKKTKTG-YSTAAKEIEQLAVNHPHPFLD 562 Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729 ++L R+ K+K+T + L + R+HT ++ TGRL+S EPNLQNIP++T+ Sbjct: 563 HLLAHREYQKMKTTL-EGLIKTVQP-DGRIHTTFNQTVASTGRLSSTEPNLQNIPVRTEA 620 Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 G++IR AFI + L++ADYSQIE+R++AH+++ L + + D+H V +++F V Sbjct: 621 GRQIRSAFIVGEGFETLMTADYSQIEMRVMAHLSEDPGLIEAYRAGEDLHNYVGSKVFDV 680 Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848 +++V+P++RR K +++ ++YG+S F L+ QL IP EA + ++ YF RF G+ Y++ Sbjct: 681 PVDEVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAREAKEIMENYFERFGGVKRYLDN 740 Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908 R++GY T+FGRR + E+NS R ERAA+NAPIQG+AADI + AMI V Sbjct: 741 VVEKARKDGYTATVFGRRRYLPELNSDNRLARENAERAALNAPIQGTAADIIKVAMIRVD 800 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 +L D L +++LLQ+HDELV EV E +I+ M+ A I L VPL+V+ Sbjct: 801 NALRD--LKSRVLLQVHDELVVEVAPGEADEVKKILEREMDSA----IELTVPLEVSAGA 854 Query: 969 SNNW 972 +W Sbjct: 855 GKDW 858 >gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4] gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Thermoanaerobacter tengcongensis MB4] Length = 871 Score = 366 bits (940), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 212/536 (39%), Positives = 331/536 (61%), Gaps = 24/536 (4%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDI 505 E L L+K FE E + H IK D LV Y GI + + D +M+Y+L+ S++D+ Sbjct: 345 ERLEDLRKIFEREDAEFVSHEIK-DFLVKLSYKGIECKSKYLDTAIMAYLLNPSESNYDL 403 Query: 506 ASIAQKWLS---YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL---WLLLRPK 559 + +++L + +E+ K +++S+ + E+ + + +L + + Sbjct: 404 ERVLKRYLKVDILSHEEVFGKGKDRRRYEEVSEEVMAEYICGRCSHLFELKDKLMAFIEE 463 Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 + ++KLL ++ P+++V+ ME+ G +D+++LK++S +I + + + + IY +G Sbjct: 464 MDMKKLLL---EIEMPLVEVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGY 520 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 +FN++SPKQLG+ LF KL P KTKTG + T ++ LEQ+ N I+ I+E+RQL+K Sbjct: 521 QFNVNSPKQLGEFLFEKLNLPVIKKTKTG-YSTDSEVLEQLTAY-NDIVSEIIEYRQLTK 578 Query: 680 IKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 +KSTY + LP + RVH+ + TGR++S EPNLQNIP++ + G++IRRAFI Sbjct: 579 LKSTYIEGFLP--LMDENDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFI 636 Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 P TK ++SADYSQIELR+LAH+++ L + F N+ DIH A+E+F V + V+P+ Sbjct: 637 -PRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPE 695 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 MRR AK +NF IIYGIS + LA L+I R EA +YI YF ++ G+ EYIEK F ++N Sbjct: 696 MRRAAKVVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKEN 755 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GYV TI RR + EINS + R+ ER A+N PIQGSAADI + AM+ V++ + L Sbjct: 756 GYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNL 815 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++++LQ+HDELV + ++E+ +I+ +ME I L+VPL V I V NW Sbjct: 816 KSRLILQVHDELVVDTYKDELELVKEILKENMENV----IKLKVPLVVEIGVGPNW 867 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 110/286 (38%), Positives = 174/286 (60%), Gaps = 10/286 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+DGSS +YRA+YA P+L+ +GL NA+ GF ML KLL+ + + A+ FD Sbjct: 4 FLLIDGSSLMYRAYYALPMLT-TSEGLHTNALYGFTMMLIKLLEEEK----PDYVAIAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ + +YKA R +PE L Q+ L++ F I +E++G+EADDII T + Sbjct: 59 KKAPTFRHKEFKEYKATRQAMPEELSEQVELLKEVIDGFNIKTLELEGYEADDIIGTVSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 +AE++G V I++ D+D +QL+SP + + K E+ D + V++++ I P++ V L Sbjct: 119 MAEEKGMEVVIVTGDRDALQLISPRVKVKISKKGITQMEEFDEKAVLERYEITPQQFVDL 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPGIP IG KTA LL+E+G++EN+L N S++ K +E I E A + Sbjct: 179 KGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLENISKL-SGKIKETIEANRELAVM 237 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 S++L + ++P+ I E L++ N +L LEF L++ + Sbjct: 238 SKRLATINRNIPLEIDFEEYRLKEFNYKKLWDLFNKLEFYSLLDSI 283 >gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4] Length = 876 Score = 366 bits (940), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 205/528 (38%), Positives = 320/528 (60%), Gaps = 22/528 (4%) Query: 454 KKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW 512 +++ +E K+ ++ K + L R G+ + G D +L +Y+++ ++ D AS+ +++ Sbjct: 358 QEWLRDESKEKVVYDAKKSIVALKRQGLELNGVSFDSLLAAYIINPAQNHEDFASVGKEY 417 Query: 513 -LSYTRKE---ILKSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 LS + + K K ++P +D +S EH ++++ L L+ L Sbjct: 418 GLSSVQSDEQVYGKGAKQAVPNLDALS-----EHVARKASMLWDLTEKLKTALKENHQDA 472 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ ++ +ME G+++D+ L + E+ L LEE IYDL+GE FN++SPK Sbjct: 473 LFFDLELPLAFILGEMEYQGVKVDRTRLTSMGKELGGKLKELEEKIYDLAGETFNINSPK 532 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL+ P KTKTG + T+A LE++ + I++ IL +RQL K+ STY + Sbjct: 533 QLGVILFEKLELPVIKKTKTG-YSTSADVLEKLQS-KHEIVEYILHYRQLGKLNSTYIEG 590 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L I++ + +VHT ++ A T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+K+ Sbjct: 591 LLKVIHEDSDKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSKEGWV 648 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHI+ L + F+ D+H A E+F V+ + V+ +MRRHAK + Sbjct: 649 IFAADYSQIELRVLAHISGDEKLMEAFQQDEDVHTKTAMEVFSVSKDDVTSEMRRHAKAV 708 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS F L+ L I R EA ++I+RY +P + EY+E R GYV T+ Sbjct: 709 NFGIVYGISDFGLSQSLNITRKEAGEFIERYLDTYPAVKEYMEDIVVEARDKGYVSTLLN 768 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + E+ S ++R+ ER A+N PIQGSAADI ++AMI + K LE+ + K+LLQ+ Sbjct: 769 RRRYIPELTSRNFNLRSFGERTAMNTPIQGSAADIIKQAMIDMAKRLEEENIEAKLLLQV 828 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE P+ EI ++ ME A + L VPLKV+ W Sbjct: 829 HDELIFEAPQSEIEKLKTMVPDVMENA----VELNVPLKVDFAFGPTW 872 Score = 207 bits (527), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 113/285 (39%), Positives = 164/285 (57%), Gaps = 9/285 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S YRAF+A PLL+ G+ NAI GF ML K+++ + +H V FD Sbjct: 6 LVLIDGNSIAYRAFFALPLLNNDK-GIHTNAIYGFTTMLMKIMEEEK----PTHVLVAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E + +YK R K P L Q P +R +A+GI E+ +EADDII T + Sbjct: 61 AGKTTFRHETFTEYKGGRQKTPPELSEQFPFIRELLKAYGISHYELPNYEADDIIGTLSK 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AE++GF+V +IS DKDL QL S T + T K E+ EH+ +KW I +++ + Sbjct: 121 KAEQDGFSVKVISGDKDLTQLASEHTTVMITKKGITDMEEYTPEHIREKWEIDVSQIIDM 180 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GDS DNIPG+PG+G KTA LL+++ ++E +L + + KK +E + E E A + Sbjct: 181 KGLMGDSSDNIPGVPGVGEKTAIKLLKQFSSIEQLLESIDEVSGKKLKEKLEENKEQAVM 240 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 S+KL + TD P+ I LE + E L K L F L+ + Sbjct: 241 SKKLATIMTDAPVEITLEEVFYEGIVDEELQMLFKELGFQSLLEK 285 >gi|58696948|ref|ZP_00372442.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans] gi|58536818|gb|EAL60040.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans] Length = 817 Score = 366 bits (940), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 216/511 (42%), Positives = 309/511 (60%), Gaps = 35/511 (6%) Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 LKI HNIK + + + +D+M+MSY LD+G+ H I +I LS EI Sbjct: 320 LKIIHNIKEIRKIFPATEKMLDSVDDLMIMSYSLDTGKHDHSIPNIVAHNLS-ENAEIF- 377 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 S K+ I I + L+ +L EKL +YER DKP++ V+ Sbjct: 378 SAKTLIAIHE----------------------KLKQRLFQEKLFTIYERFDKPLMKVIFD 415 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI ++ L+++S + + + LE+ IY+L+GE+FN++SPKQL D+LF K+ Sbjct: 416 MEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNKMGLNKK 475 Query: 643 AKTKTGQWKTTAQD-LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 K+K +T + LE + I IL WR LSK+K TY D+L ++ R+HT Sbjct: 476 KKSKKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHT 535 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 +S +T TGRL+S PNLQNIPI+++ G IR+AFI+P K+ISADYSQIELR+LAH+ Sbjct: 536 SFSTTATATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHV 595 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 A + + F N DIH + A ++FGV +++ Q+RR AK+INF IIYGISPF LA +L Sbjct: 596 ANVAAFKEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRL 653 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I +EAA+YI YF +P I Y+EK + R +GYVET+FGRR +IN+ +R Sbjct: 654 GITIAEAAEYINYYFSCYPEIKVYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYVRQ 713 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ERAAINAP+QG+AADI +RA I + L+ K++LQ+HDEL+ EV +E++ + Sbjct: 714 FAERAAINAPLQGTAADIIKRATIQLFDQLK----VGKIILQVHDELLVEVEDEKVQETA 769 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ ME A I + VPL+V IKV +NW Sbjct: 770 KLMKDIMENA----IEISVPLEVEIKVGDNW 796 Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 146/242 (60%), Gaps = 1/242 (0%) Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 + + + D FR+++YP+YKANR PE L PQ ++R A +AF + EI+G+EA Sbjct: 9 SDYLTIALDAGKKNFRHDLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEA 68 Query: 118 DDIIATYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPP 176 DDIIAT A + F V ++S+DKDL QL++ ++D +K ID + +++K+G+ Sbjct: 69 DDIIATLAAKYANHQDFKVVVVSSDKDLFQLLNYNILIFDPIKNIYIDEKQIVEKFGVNS 128 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 K++ L +LTGD+ DNIPG+PGIG KTA LL E+ +L NI+ N I+Q + R + E+ Sbjct: 129 NKLLDLFSLTGDASDNIPGVPGIGPKTATKLLDEFDSLNNIIENIDNIEQTRIRNILAEH 188 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E A +SR+L+ L V + + + N +L+SFLK EF LI ++ + + Sbjct: 189 KEKALISRELLSLCEKVDLQHDIAKCEVRPPNMEKLLSFLKKYEFNSLIGKMEKLFSYNG 248 Query: 297 AN 298 ++ Sbjct: 249 SS 250 >gi|225630667|ref|YP_002727458.1| DNA polymerase I [Wolbachia sp. wRi] gi|225592648|gb|ACN95667.1| DNA polymerase I [Wolbachia sp. wRi] Length = 858 Score = 366 bits (940), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 216/511 (42%), Positives = 309/511 (60%), Gaps = 35/511 (6%) Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 LKI HNIK + + + +D+M+MSY LD+G+ H I +I LS EI Sbjct: 361 LKIIHNIKEIRKIFPATEKMLDSVDDLMIMSYSLDTGKHDHSIPNIVAHNLS-ENAEIF- 418 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 S K+ I I + L+ +L EKL +YER DKP++ V+ Sbjct: 419 SAKTLIAIHE----------------------KLKQRLFQEKLFTIYERFDKPLMKVIFD 456 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI ++ L+++S + + + LE+ IY+L+GE+FN++SPKQL D+LF K+ Sbjct: 457 MEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNKMGLNKK 516 Query: 643 AKTKTGQWKTTAQD-LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 K+K +T + LE + I IL WR LSK+K TY D+L ++ R+HT Sbjct: 517 KKSKKSGSYSTNYEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHT 576 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 +S +T TGRL+S PNLQNIPI+++ G IR+AFI+P K+ISADYSQIELR+LAH+ Sbjct: 577 SFSTTATATGRLSSSNPNLQNIPIRSEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHV 636 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 A + + F N DIH + A ++FGV +++ Q+RR AK+INF IIYGISPF LA +L Sbjct: 637 ANVAAFKEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRL 694 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I +EAA+YI YF +P I Y+EK + R +GYVET+FGRR +IN+ +R Sbjct: 695 GITIAEAAEYINYYFSCYPEIKVYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYVRQ 754 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ERAAINAP+QG+AADI +RA I + L+ K++LQ+HDEL+ EV +E++ + Sbjct: 755 FAERAAINAPLQGTAADIIKRATIQLFDQLK----VGKIILQVHDELLVEVEDEKVQETA 810 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ ME A I + VPL+V IKV +NW Sbjct: 811 KLMKDIMENA----IEISVPLEVEIKVGDNW 837 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 112/297 (37%), Positives = 175/297 (58%), Gaps = 8/297 (2%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 KE ++DG F++RA+Y P L G+P+ + GF NM+ K + +S +IA Sbjct: 2 KEKTFTIIDGYGFLFRAYYVLPHLITT-TGMPIGGVYGFLNMVLKYIAHSDYLTIA---- 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 D FR+++YP+YKANR PE L PQ ++R A +AF + EI+G+EADDIIA Sbjct: 57 --LDAGKKNFRHDLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIA 114 Query: 123 TYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T A + F V ++S+DKDL QL++ ++D +K ID + +++K+G+ K++ Sbjct: 115 TLAAKYANHQDFKVVVVSSDKDLFQLLNYNILIFDPIKNIYIDEKQIVEKFGVNSNKLLD 174 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L +LTGD+ DNIPG+PGIG KTA LL E+ +L NI+ N I+Q + R + E+ E A Sbjct: 175 LFSLTGDASDNIPGVPGIGPKTATKLLDEFDSLNNIIENIDNIEQTRIRNILAEHKEKAL 234 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 +SR+L+ L V + + + N +L+SFLK EF LI ++ + + ++ Sbjct: 235 ISRELLSLCEKVDLQHDIAKCEVRPPNMEKLLSFLKKYEFNSLIGKMEKLFSYNGSS 291 >gi|325570069|ref|ZP_08145994.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC 12755] gi|325156897|gb|EGC69068.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC 12755] Length = 881 Score = 366 bits (940), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 213/524 (40%), Positives = 307/524 (58%), Gaps = 17/524 (3%) Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-- 512 + ++E K ++ K + L+RY + +G D++L +Y+LD+ +++DIA +A + Sbjct: 364 WLKDEKRKKFVYDAKRTYVALNRYTTAPKGIAFDVLLAAYLLDTNDTNNDIAGVAAHYGY 423 Query: 513 --LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570 + K K +P D + H I L L +L + ++E Sbjct: 424 DAIQSDEAIYGKGAKKGLPAD---EEDFFAHLARKVAAITNLTPKLTEELAAKNQTALFE 480 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 ++ P+ ++++MEITGI++D L Q+ E ++ L +EE IY +GE FNL+SPKQLG Sbjct: 481 EMELPLSMILAEMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYAEAGETFNLNSPKQLG 540 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF K+ P KTKTG + T LEQ+ PI+++IL +RQ++KI+STY + L Sbjct: 541 VILFEKMGLPVIKKTKTG-YSTAVDVLEQLKE-QAPIVEDILTYRQIAKIQSTYVEGLLK 598 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 I + +VHT Y T TGRL+S++PNLQNIPI+ + G+KIR AF+ T +I S+D Sbjct: 599 VI-QGDGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPRETDWVIYSSD 657 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSI 808 YSQIELR+LAHI+ T L + F DIH A +FG+ E V+P MRR AK +NF I Sbjct: 658 YSQIELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGI 717 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS + L+ L I R A YI YF ++PG+ Y+E + GYVET++ RR + Sbjct: 718 VYGISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRY 777 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS +IR ER AIN PIQGSAADI + AMI + K L++ KLA MLLQ+HDEL Sbjct: 778 LPDINSRNFNIRTFAERTAINTPIQGSAADILKIAMIDLAKRLKEEKLAATMLLQVHDEL 837 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 VFEVPE E+ ++ ME+A + L VPL + W Sbjct: 838 VFEVPESELPRLDALVKEVMEQA----VALHVPLLTDSNWGKTW 877 Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 105/296 (35%), Positives = 159/296 (53%), Gaps = 12/296 (4%) Query: 4 ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +N L LVDG+S +RAF+A L R +GL NAI F M +N + +H Sbjct: 3 KNKLLLVDGNSVAFRAFFALHNSLERFKNANGLHTNAIYAFHTMF----ENVMAKEQPTH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR +Y DYK R K P Q+P +R A G+ E+ +EADDI Sbjct: 59 VLVAFDAGKTTFRTAMYEDYKGGRSKTPGEFKEQMPYIRELINALGVQYYELDNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175 I T +KE F V ++S D+DL QL + + TVK E HV +K+ G+ Sbjct: 119 IGTLANKVDKELFDVVVLSGDRDLTQLATEHVKVDITVKGVSEIESYTPAHVAEKYDGLT 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ ++ L GD+ DNIPG+ IG KTA LL+EYG++E I + +K+ K +EN++ Sbjct: 179 PLQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKEYGSVEGIYEHIDEMKKSKMKENLIN 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 E A LS++L + D PI + ++ L E + +L+ F + + F ++++ T Sbjct: 239 DREIAFLSKQLATIDVDAPIEVDVDKLKYEGKDLEKLVPFYQEMNFNSFLDKLQIT 294 >gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN] gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN] gi|282934507|ref|ZP_06339762.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16] gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN] gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN] gi|281301454|gb|EFA93743.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16] Length = 885 Score = 366 bits (940), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 211/543 (38%), Positives = 337/543 (62%), Gaps = 33/543 (6%) Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH 503 LTK+ L L E++ K ++K + L+R GI D++L SY++++ +S+ Sbjct: 361 LTKQPLLSL---LEDQAIAKNVFDLKRTMVGLYRLGIKSHNMNYDMLLASYLVNNENNSN 417 Query: 504 DIASIAQKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEH--AIENSNVILQLWLLLR 557 D+ I Q + Y + + K +K++IP + + + + AIE +L+ Sbjct: 418 DLGEICQLYNYYDLQPDIDIYGKGKKAAIPEETVFFNHLAGKVLAIE----------VLK 467 Query: 558 PKLIVEKLLH----VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613 P L+ + H +YE ++ P+ +V+++MEITG++ D L Q+ + ++ L LE +I Sbjct: 468 PTLLKKLTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFAQRLTELEADI 527 Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673 Y +GE+FN++SPKQLG ILF KL P KTKTG + T+ + LEQ+ +PI++ +L+ Sbjct: 528 YLEAGERFNINSPKQLGQILFEKLGLPPIKKTKTG-YSTSVEVLEQLKE-QSPIVQKVLD 585 Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733 +RQ++KI+STY L + I + RVHT Y T TGRL+S++PNLQNIP++ + G+KI Sbjct: 586 YRQIAKIQSTYVKGLLDVI-QPDGRVHTRYQQTLTATGRLSSVDPNLQNIPVRLEEGKKI 644 Query: 734 RRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-E 791 R+AF+ S + S DYSQ+ELR+LAH++ + + F+ DIH A +IF ++ Sbjct: 645 RKAFVPSNSDGYIFSCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAMKIFHLDSPN 704 Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851 +V+P MRRHAK +NF I+YGIS + L+ L I R +A ++I YF ++P I +Y++K N Sbjct: 705 EVTPNMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKEFIDNYFEQYPKIKDYMDKEIN 764 Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911 F R+NGYVETI RR + +I++ ++R+ ER AIN+PIQG AADI + AMI++ K L Sbjct: 765 FARENGYVETIMHRRRYLPDIHAKNFNVRSFAERTAINSPIQGGAADIIKIAMINMQKKL 824 Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 ++ L TKML+Q+HDEL+F+VP +E+ T +++ M+ A + L VPL + ++ Sbjct: 825 DELHLKTKMLIQVHDELIFDVPADELETIKKVVPEVMQNA----VQLDVPLVADSNWGHD 880 Query: 972 WQE 974 W E Sbjct: 881 WYE 883 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 108/295 (36%), Positives = 167/295 (56%), Gaps = 17/295 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L R+ D GL NAI F NML ++ K+ SH Sbjct: 6 LLLIDGNSVAFRAFYA---LYRQLDRFQNPEGLHTNAIYAFKNMLDVIV----KQENPSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD VTFR ++Y DYK R K P LL Q+P ++ + GI + E+ +EADDI Sbjct: 59 VLVAFDAGKVTFRTKLYSDYKGGRQKTPSELLEQIPYIKEMLKDLGIKSYELANYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKE-EKIDIEHVIKKWGIPP 176 I TY+ + E G+ V ++S DKDL QL S T +Y T V E E EH+ + G+ P Sbjct: 119 IGTYSKMGEDAGYQVAVVSGDKDLTQLASDLTTVYVTKSGVSELEAFTPEHMKEVNGVTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + ++AL GD+ DN PG+ +G KTA+ L+Q+YG++ENI + +K+ K +EN++ Sbjct: 179 TEFIDMKALMGDNSDNYPGVTKVGPKTASNLIQQYGSVENIYKHIDEMKKSKLKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 + A L++ L + P+ + L+ L ++ N L F + + F + + + ++ Sbjct: 239 KDKAFLAKTLATIDRTSPVELKLDDLKKQETNTVELRKFYEQMNFRRFLAELNSS 293 >gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B] gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B] Length = 952 Score = 366 bits (940), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 216/536 (40%), Positives = 317/536 (59%), Gaps = 13/536 (2%) Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHD 504 + +I +K +FE+ + K+ H+ K VL I++ G +D MLM YVL++ SHD Sbjct: 425 SAKIFEAVKPWFES-NAPKLFHDAKAAIHVLAAQHIAVNGQIDDAMLMDYVLEA-HLSHD 482 Query: 505 IASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561 + I+ + L TR E+ + + E++ + +L+ +L+ Sbjct: 483 LVRISARELRRRIPTRDEVSGKGAKRVGWRETPPEDAARFLAESAAALRAAGSVLKARLL 542 Query: 562 V-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 EKLL VYE +++P++ V+++ME GI +D LL Q S E+ + L E + +G Sbjct: 543 ADEKLLRVYEDIERPLVGVLARMESAGITVDASLLAQESKELGVEVEQLVEEAHAAAGHP 602 Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 FNLSSPKQL ILF + P KT +G T + L ++ + P+ K ILE R+L+K+ Sbjct: 603 FNLSSPKQLAQILFAEQGLPVVKKTASGTPSTDEEVLSELAL-NYPLPKIILEHRRLTKL 661 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 KSTY D LP I+ R R+HT + A +TGRL+S++PNLQNIP +T G++IR AF + Sbjct: 662 KSTYLDKLPTLID-RDGRIHTTFGQAVAVTGRLSSMDPNLQNIPTRTPEGRRIRTAFTAR 720 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 +I ADYSQ+ELRI+AH+++ L F DIHR AAE+F +++V+P RR Sbjct: 721 RGWSVIDADYSQVELRIMAHLSQDAGLLSAFSRGEDIHRSTAAEVFHTPLDQVTPDQRRM 780 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 AK INF +IYG+S F LA Q+ + R AA Y+ YFH+FPG+ Y+EKT+ ++GYVE Sbjct: 781 AKVINFGLIYGMSAFGLAQQMGLDRQVAAAYVDEYFHKFPGVKRYMEKTRAQAAEDGYVE 840 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 T FGRR+ +I +P+ +R ERAAINAP+QG+AADI +RAMI+V L KL K+ Sbjct: 841 TAFGRRLWVPDITAPRPMVRAAAERAAINAPMQGTAADIIKRAMIAVDAWLRTEKLQAKL 900 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 LLQ+HDEL+ E P EE+ Q + M A L VPL ++ V +W + + Sbjct: 901 LLQVHDELIVEAPAEEVELVKQKLPELMAGAA----KLSVPLIADVGVGASWNDAH 952 Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 92/223 (41%), Positives = 132/223 (59%), Gaps = 5/223 (2%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DGS++++RA++A P L+ G P AI GF ML N + S A AVI Sbjct: 2 SKLLLIDGSNYLFRAYHALPPLTTSR-GEPSGAIKGFLGML----ANVARLSKADRAAVI 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD P TFR+E+YP YKANRP +PE L Q+ ++ +A G P + + G EADD+I + Sbjct: 57 FDAPGKTFRHEMYPAYKANRPPMPEELRTQIEPLQGIVRALGWPLLIVPGIEADDVIGSL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 + +A + G + + DKD+ QLV L +T+ + D E VI+K+G+PPE M+ A Sbjct: 117 SAMAARAGVDTVVATGDKDMAQLVDDHVVLLNTMNSKFYDREGVIEKYGVPPESMIAYLA 176 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 L GD +DN+PGI G KTAA + E G ++ I A +K K Sbjct: 177 LMGDKVDNVPGIKSCGPKTAAKWINEIGGIDAIRAAAPTMKGK 219 >gi|322382878|ref|ZP_08056713.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153147|gb|EFX45602.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 908 Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 201/508 (39%), Positives = 313/508 (61%), Gaps = 16/508 (3%) Query: 473 KLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSS 527 +L L GI +RG D++L SY+LD S+ ++ +A K+ L + K K Sbjct: 409 QLALSWKGIKLRGVSFDVLLASYLLDPTESTLTLSGVAGKYSVASLPADEQVFGKGAKFK 468 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 +P + + + E+ + + +L +L+ KL + +Y L+ P+ V+++ME+ G Sbjct: 469 LPEEHL----LGENLSLKAERVSRLVPVLKAKLEESGMQELYYELEHPLAGVLAEMELAG 524 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I++D++ LKQ+ EIS L ++ + IY+ +G FN++SPKQLG++LF KL+ P KTKT Sbjct: 525 IKVDKESLKQLGTEISDQLKTIMDRIYEQAGMTFNINSPKQLGEVLFEKLQLPVQKKTKT 584 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 G + T A+ LE++ + I+ +IL +R L+K++STY + L + T +VHT+Y Sbjct: 585 G-YSTDAEVLEKL-APYHDIVGDILHYRTLAKLQSTYVEGLLKEVRPDTGKVHTYYRQTI 642 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITP 766 TGRL+S PNLQNIPI+ + G+KIR+ F+ S P +++ADYSQIELR+LAHI+ Sbjct: 643 AATGRLSSQYPNLQNIPIRLEEGRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEK 702 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L + F +DIH A ++FGV+ +V MRR AK +NF I+YGIS + L+ L I R Sbjct: 703 LKEAFVKDMDIHTKTAMDVFGVSEAEVDANMRRSAKAVNFGIVYGISDYGLSQNLGITRK 762 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA+ +I++YF F G+ Y++ + GYV T+ RR + EIN+ ++R+ ER Sbjct: 763 EASRFIEQYFSVFRGVRNYMDSIIREAKTQGYVTTLLQRRRYLPEINASNYNLRSFAERT 822 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 A+N PIQG+AADI + AM+ + + L+ KL + MLLQ+HDEL+FEVPE+E+ T +++ Sbjct: 823 AMNTPIQGTAADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVPE 882 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME+A + L VPLKV + NW E Sbjct: 883 VMEQA----LALDVPLKVEVDEGENWYE 906 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 116/287 (40%), Positives = 176/287 (61%), Gaps = 12/287 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DG+S RAFYA PLLS GL NA+ GF ML +L++ + +HF V FD Sbjct: 28 LIIIDGNSIANRAFYALPLLSNS-SGLHTNAVYGFTTMLLRLIEEEK----PTHFLVAFD 82 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 VTFR++ Y +YK R K P L Q PL++ AFGI E++G+EADDII T T Sbjct: 83 AGKVTFRHKEYKEYKGGRAKTPSELSEQFPLIKELLNAFGIRQFELEGYEADDIIGTLTR 142 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181 A+++ V ++S DKD++QL S + T K ++EH + +K+G+ PE+++ Sbjct: 143 AADEKKKHVMLVSGDKDMLQLASDYVTVAITRKGIS-EVEHYGPKEIEEKYGLKPEQIID 201 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GDS DNIPGIPG+G KTA LL EYG++E++L +A +K K +E + E A+ AR Sbjct: 202 MKGLMGDSSDNIPGIPGVGEKTALKLLHEYGSVESVLEHADELK-GKMKEKVKENADLAR 260 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +S++L + +VP++ + L+ E GP+L + LEF L+ ++ Sbjct: 261 MSKELATIFREVPMSTEWDELVYEGYEGPKLQEMFRKLEFKSLLEKL 307 >gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4] gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4] Length = 884 Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 202/528 (38%), Positives = 321/528 (60%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK 511 KK+ ++ K + K + L GI ++G + D+++ +Y+LD + D ++A+ Sbjct: 365 FKKWLADDEMRKYTFDAKRAIVALKWKGIEIQGIYFDLLIAAYLLDPADTDKDFRAVAKM 424 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P I V EH +V+ + +L + Sbjct: 425 KETHAVKSDEEVYGKGAKRAVPAQDI----VAEHVARKVHVLYDVQKTFVEELQKNEQYE 480 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V+++ME+ G+ +D + L+ + E++ L +E+ IY+L+G +FN++SPK Sbjct: 481 LFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELAGTEFNINSPK 540 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II IL +RQL K+ STY + Sbjct: 541 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MEHHEIIPKILHYRQLGKLNSTYIEG 598 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AFI P+K+ Sbjct: 599 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFI--PSKEGWV 656 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIAK L + F++ +DIH A ++FGV ++V+ MRR AK + Sbjct: 657 MYAADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 716 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R A ++I++YF FPG+ EY+++ +Q GYV T+ Sbjct: 717 NFGIVYGISDYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTLLN 776 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQGSAADI ++AMI + LE+ L ++LLQ+ Sbjct: 777 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 836 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FEVP+EE+ +++ ME A I L VPLKV+ W Sbjct: 837 HDELIFEVPKEEVEKLEKLVPEVMEHA----IELAVPLKVDYSSGPTW 880 Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 176/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 9 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 63 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ + +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 64 AFDAGKTTFRHKTFSEYKGGRQKTPPELSEQFPFIRELLDAFHVPRYELENYEADDIMGT 123 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G V +IS DKDL+QLVS TT C+ + ++ E + +K+ + P+++ Sbjct: 124 LAKEANEQGAHVKVISGDKDLLQLVSDTTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 183 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++ +E + N ++ KK +EN+ E Sbjct: 184 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDKVSGKKLKENLEMNKEQ 243 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S++L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 244 AFMSKELATIITDAPITVHVDDIEYKGYEASDVIPMFENLGFTSLLNKLGATPEETAPAE 303 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 304 LDDISFDI 311 >gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17] gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17] Length = 877 Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 202/528 (38%), Positives = 321/528 (60%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK 511 KK+ ++ K + K + L GI ++G + D+++ +Y+LD + D ++A+ Sbjct: 358 FKKWLADDEMRKYTFDAKRAIVALKWKGIEIQGIYFDLLIAAYLLDPADTDKDFRAVAKM 417 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P I V EH +V+ + +L + Sbjct: 418 KETHAVKSDEEVYGKGAKRAVPAQDI----VAEHVARKVHVLYDVQKTFVEELQKNEQYE 473 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V+++ME+ G+ +D + L+ + E++ L +E+ IY+L+G +FN++SPK Sbjct: 474 LFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELAGTEFNINSPK 533 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II IL +RQL K+ STY + Sbjct: 534 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MEHHEIIPKILHYRQLGKLNSTYIEG 591 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AFI P+K+ Sbjct: 592 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFI--PSKEGWV 649 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIAK L + F++ +DIH A ++FGV ++V+ MRR AK + Sbjct: 650 MYAADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 709 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R A ++I++YF FPG+ EY+++ +Q GYV T+ Sbjct: 710 NFGIVYGISDYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTLLN 769 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQGSAADI ++AMI + LE+ L ++LLQ+ Sbjct: 770 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 829 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FEVP+EE+ +++ ME A I L VPLKV+ W Sbjct: 830 HDELIFEVPKEEVEKLEKLVPEVMEHA----IELAVPLKVDYSSGPTW 873 Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 176/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ + +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTFSEYKGGRQKTPPELSEQFPFIRELLDAFHVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G V +IS DKDL+QLVS TT C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEANEQGAHVKVISGDKDLLQLVSDTTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++ +E + N ++ KK +EN+ E Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDKVSGKKLKENLEMNKEQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S++L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 237 AFMSKELATIITDAPITVHVDDIEYKGYEASDVIPMFENLGFTSLLNKLGATPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDISFDI 304 >gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC 29799] gi|150272809|gb|EDM99977.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC 29799] Length = 889 Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 197/513 (38%), Positives = 300/513 (58%), Gaps = 15/513 (2%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 H++K L G+ GF D + +Y+L S+++ + ++Y +E K++ Sbjct: 384 HDVKTLLSRLLEEGVEGDGFVFDTAIAAYLLAPTDGSYELEKLG---ITYFNQEFAKAKD 440 Query: 526 SSIPIDKIS----DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + D S + V + + +I L +L P+L + +Y ++ P+ V+S Sbjct: 441 TYLAPDAFSPLADQTAVLGGMLSHCALIGALKKVLAPRLEELGMHQLYYDIELPLCQVLS 500 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME G+ +D+ L + + + + + + IY+L+GE FN++S +QLG ILF KL P Sbjct: 501 AMEHAGMLVDRKALSEFGDMLDERIAADQAEIYELAGETFNINSTQQLGKILFDKLGLPP 560 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG + T A+ LE++ G +PII ILE+RQ +K+KSTY D L I R+HT Sbjct: 561 VKKTKTG-YSTNAEVLEKLR-GQHPIIDKILEYRQYTKLKSTYVDGLGKVIAP-DGRIHT 617 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 + T TGRL+S EPNLQNIP++T+LG ++R+ F++P K L+ ADYSQIELR+LAHI Sbjct: 618 SFQNTVTATGRLSSTEPNLQNIPVRTELGAELRKMFVAPAGKVLVDADYSQIELRLLAHI 677 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 A + + F DIH + AA++FGV +++V+ MR AK +NF I+YGIS F L+ + Sbjct: 678 AGDEHMIEAFRTGEDIHTVTAAQVFGVPVDQVTKHMRSSAKAVNFGIVYGISAFSLSQDI 737 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 +P EA +YI++YF RF G+H Y+ N + +GYV T+FGRR E+ S + R+ Sbjct: 738 GVPTYEAKEYIEKYFARFSGVHAYMTDVVNRAKTDGYVSTLFGRRRWLPELKSSNFNTRS 797 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER A+N PIQG+AADI + AM+ VH L + L +++LQ+HDEL+ E PEEE T Sbjct: 798 FGERVALNMPIQGTAADIMKLAMLHVHSRLREEGLQARLILQVHDELIVECPEEEAETVK 857 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ ME L VPL + +W E Sbjct: 858 ALLSREMESVA----QLAVPLIADAAAGRSWAE 886 Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 98/292 (33%), Positives = 156/292 (53%), Gaps = 16/292 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DG+S + RAFY +L+ + DG P NA+ GF +L KL+ + +++ FD Sbjct: 3 LMVIDGNSIVNRAFYGVHMLTTR-DGQPTNAVYGFLTILQKLVDEEKPDALC----CTFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ Y YKA R +P+ L Q+P+++ A IP E+ G+EADD+I T + Sbjct: 58 RKAPTFRHLAYEGYKAQRKGMPDELASQMPILKEVLDAMNIPRYEMDGWEADDLIGTISV 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL--------YDTVKEEKIDIEHVIKKWGIPPEK 178 G+ +++ DKD +QLV+ T + T KE D + +G P Sbjct: 118 KDAAAGWDTVVVTGDKDSLQLVTDRTRVKLVSTRMGQTTTKEMTPDT--FRETYGFDPIH 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-RENILEYA 237 ++ L+AL GD+ DNIPG+ G+G KTA L+Q Y ++E I + +++ K + + E Sbjct: 176 IIDLKALMGDASDNIPGVKGVGEKTAMDLIQRYQSVEAIYADLDKVEAKPAVLKKLTEGR 235 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 E A +S L +RTD P+ E ++ N L LEF+KLI+++ Sbjct: 236 EQAMMSYDLATIRTDAPLDFKPEDAARKEVNQAELYQLFLKLEFSKLIDKMG 287 >gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus V713p Mutant Bound To G:dctp gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus V713p Mutant Bound To G:dctp Length = 579 Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 196/463 (42%), Positives = 296/463 (63%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 134 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 179 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 180 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 238 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 239 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 296 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 297 VVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 356 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +NF I Sbjct: 357 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIP 416 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 417 YGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 476 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L +LLQ+HDEL+ Sbjct: 477 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 536 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 537 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 575 >gi|326692715|ref|ZP_08229720.1| DNA polymerase I [Leuconostoc argentinum KCTC 3773] Length = 893 Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 199/526 (37%), Positives = 321/526 (61%), Gaps = 15/526 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L+ EN +K N+K ++ R G++++G + D +L +Y+LD+ + ++++++AQ+ Sbjct: 373 LRAVIENPAIIKNVFNVKAQLVMFKRLGLALQGVDFDFLLAAYLLDTTANDNELSTLAQR 432 Query: 512 WLSYTR--KEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 + Y + +EI K K ++P D +V H + ++ ++QL L + +H+ Sbjct: 433 FDVYVQPDEEIYGKGAKFAVPEDV---DRVLMHLGQKADALMQLETPTLAALTDHEQMHL 489 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 Y ++ P+ V++ ME GI I+Q L ++ +++ + ++E+ IY +GEKFN++SPKQ Sbjct: 490 YTDIELPLAHVLADMEYRGIAINQARLAEIGTDLTGRIQAIEDAIYLEAGEKFNINSPKQ 549 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LG +LF K+ P KTKTG +TA D+ + PI+ +L++RQL+K+KSTY D L Sbjct: 550 LGVLLFEKMGLPVIKKTKTGY--STAVDVLEKLAHQAPIVDYVLQYRQLAKLKSTYVDGL 607 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747 +N++ ++HT + T TGRL+S++PNLQNIP+++D G++IR AF+ S P ++ Sbjct: 608 LAVVNQKDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRSDEGRQIRTAFVPSQPDWQIFG 667 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINF 806 ADYSQIELR+LAH+ + Q F N DIH A +FG++ + V+ RR AK +NF Sbjct: 668 ADYSQIELRVLAHMTGDKNMQQAFLNGEDIHAETARAVFGLDSQAPVNAVQRRTAKAVNF 727 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YGIS F LA L I R++A +I YF FP +HE++E K GYVETI RR Sbjct: 728 GIVYGISDFGLANNLGISRAQAKQFIDTYFKEFPKVHEWMENIKAVAHAQGYVETIAKRR 787 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + +I++ ++R+ ER A+N+PIQGSAADI + AMI V +L ++ + +MLLQ+HD Sbjct: 788 RYLPDIHAKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVADALAENNMQARMLLQVHD 847 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EL+FE P EI + ++ M+ A + L VP++V W Sbjct: 848 ELIFEAPTSEIPALTALVTKVMDSA----VTLDVPMQVESHYGKTW 889 Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 158/292 (54%), Gaps = 15/292 (5%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L R H+GL NA+ F N L +++ + + AV Sbjct: 5 LLLIDGNSLAFRAFYAMYNQLDRMIAHNGLHTNALVAFNNFLDQIV-----DPMQPDLAV 59 Query: 64 I-FDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 + +D + TFR +++ YK R K PE Q P +R G+ E G EADDI Sbjct: 60 VAWDAASGKETFRGDLFAGYKDGRSKAPEEFKEQFPYLREMVALHGLRNYEHPGLEADDI 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T++ + E G+ VTI++ D+DL+QL + + T K E+ ++ +K+G+ P Sbjct: 120 IGTFSRLGEAAGYQVTIVTGDQDLIQLATDNITVNVTKKGVTGIERFTPAYIQEKYGLTP 179 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 +++ +ALTGD+ D PG+ IG KTA LL +Y +L+N+ +K K +EN++ Sbjct: 180 LQIIEKKALTGDTSDTYPGVTKIGEKTALKLLAQYHDLDNLYAQIDEMKPSKMKENLIND 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A +R+L +RTD + +PL + + L+ F + ++F + + ++ Sbjct: 240 REAAYTARQLATIRTDADLELPLTEIEYRGIDYDGLVPFYEDIDFKQQLAKI 291 >gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax] Length = 877 Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 195/464 (42%), Positives = 299/464 (64%), Gaps = 34/464 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 431 KGAKRAVPDEPV----LAEHLVRKAAAI---WALERPFLDELRRNEQDRLLVE------- 476 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 477 -LEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQLG 535 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE-WRQLSKIKSTYADSLP 689 ILF KL+ P K+KTG + T+A LE++ + I++NIL+ +RQL K++STY + L Sbjct: 536 VILFEKLQLPVLKKSKTG-YSTSADVLEKL-APYHEIVENILQHYRQLGKLQSTYIEGLL 593 Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SA 748 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +A Sbjct: 594 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAA 653 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +NF I Sbjct: 654 DYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGI 713 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 714 VYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRY 773 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L ++LLQ+HDEL Sbjct: 774 LPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHDEL 833 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 834 ILEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 873 Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 118/289 (40%), Positives = 173/289 (59%), Gaps = 11/289 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS YRAF+A PLL G+ NA+ GF ML K+L E +H V FD Sbjct: 5 LVLIDGSSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEEPTHMLVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E + +YK R + P L Q PL+R +A+ IPA E++ +EADDII T Sbjct: 60 AGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGTLAA 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181 AE+EGF V +IS D+DL QL SP + D K+ DIE V +K+G+ PE++V Sbjct: 120 RAEQEGFEVKVISGDRDLTQLASPHVTV-DITKKGITDIEPYTPEAVREKYGLTPEQIVD 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +E + ++ E A Sbjct: 179 LKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQHREMAL 238 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 LS+KL +R D P+ + L+ + + + ++++ K L F + ++ + Sbjct: 239 LSKKLAAIRRDAPVELSLDDIAYQGEDREKVVALFKELGFQSFLEKMES 287 >gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87] Length = 687 Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 206/532 (38%), Positives = 335/532 (62%), Gaps = 28/532 (5%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHD--IAS 507 SY K ++E L+ + K +L RYG + F ED+ L +++L S + D I+S Sbjct: 174 SYFKNMLKHETSLRTW-DAKEMMHLLQRYGFYVPSFKEDLHLAAFLLHSQATDTDSLISS 232 Query: 508 IAQKWLSYTRKEILKSRKS--SIPIDK---ISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 + + L T ++LK K+ + ID+ ++ + + +I N+ +L Sbjct: 233 LGIE-LPETIHDLLKKAKTVEACHIDRLLPVTCAWTWQLSIRQDNIF--------DELKK 283 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 + LL +YE ++KP++ ++ +ME GI ID+++L ++ A+ L SL + I++++ FN Sbjct: 284 DNLLDLYENIEKPLVRILFEMENQGIHIDENVLDEIGAKTDTILESLTQQIHEMAHMVFN 343 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 ++SPKQL +L+ +L G K ++ T+A+ LE++ G +PII +L++R+ SKIKS Sbjct: 344 INSPKQLAGVLYDELNLKGGGKKRS----TSAEVLEKLK-GSHPIIDVLLDYRKYSKIKS 398 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY + L HI + + ++HT ++ A T TGRL+S +PNLQNI ++ + G++IR+AF++ Sbjct: 399 TYIEGLKKHIQQDS-KIHTCFNQAMTQTGRLSSSDPNLQNISVRDEQGREIRKAFVAQKG 457 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 KL+SADYSQIELR+LAH+A T + + F+ DIH A+ IF V+ E V+P MRR AK Sbjct: 458 YKLLSADYSQIELRMLAHMANETHMIEAFKEGADIHNRTASHIFHVSQEDVTPDMRRVAK 517 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 T+NF I+YG + F L+ QL+I R EA ++++ YF +P IH+++ + +F ++NGYVET+ Sbjct: 518 TVNFGIVYGQTEFGLSQQLKISRKEAGEFMETYFASYPNIHQFMNQLIDFCKENGYVETM 577 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 F RR EIN R +RAA+NAPIQGSAAD+ + AMI V +++++ + +KMLL Sbjct: 578 FHRRRMIPEINDKNFMTREFGKRAAMNAPIQGSAADLIKIAMIRVDQAMKEKNVKSKMLL 637 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+F VP++E+ ++ +ME+A + L+VPLK +I +W E Sbjct: 638 QIHDELIFLVPDDELEVMQALVKEAMEQA----MELKVPLKASINFGQSWYE 685 Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 68/122 (55%), Gaps = 14/122 (11%) Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++++ L+ + GDS DNIPG+ GIG K A LL +YG+LEN+ N +IK K++E +L Sbjct: 2 PKQIIDLKGIMGDSSDNIPGVAGIGEKGATKLLVQYGSLENVYENIDQIK-GKQKEKLLN 60 Query: 236 YAETARLSRKLVMLRT--DVPITIPLEHLILEDCN----GPRLISFLKALEFTKLINRVA 289 E A +S++L + T D P TI +DC ++ F + E LI++ Sbjct: 61 DKENAFMSKELATIYTSMDFPFTI-------QDCKFDGYDEKVNDFYQKYEMRSLISKTT 113 Query: 290 TT 291 T Sbjct: 114 MT 115 >gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1] Length = 833 Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 210/523 (40%), Positives = 322/523 (61%), Gaps = 36/523 (6%) Query: 467 HNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL 521 H IK D LV Y GI + + D +M+Y+L+ S++D+ + +K+L + +E+ Sbjct: 326 HEIK-DFLVKLSYKGIECKSKYIDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVF 384 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK------- 574 + +++I + + ++ + L EKL++ E +D Sbjct: 385 GKGRDKKKLEEIREDVLADYICSRCVHLFDLR---------EKLMNFIEEMDMKKLLLEI 435 Query: 575 --PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 P+++V+ ME++G +D+++LK++S +I + + + IY +G +FN++SPKQL + Sbjct: 436 EMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQFNVNSPKQLSEF 495 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNH 691 LF KL P KTKTG + T ++ LEQ+ N ++ +I+E+RQL+K+KSTY D LP Sbjct: 496 LFEKLNLPVIKKTKTG-YSTDSEVLEQL-VPYNDVVSDIIEYRQLTKLKSTYIDGFLP-- 551 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749 + RVH+ + T TGR++S EPNLQNIPI+ + G++IRRAFI P TK ++SAD Sbjct: 552 LMDENNRVHSNFKQMVTATGRISSTEPNLQNIPIREEFGRQIRRAFI-PRTKDGYIVSAD 610 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAH++ L + F N+ DIH AAE+F V +EKV+P+MRR AK +NF II Sbjct: 611 YSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNFGII 670 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + L+ L+I R EA +YI YF R+ G+ EYIEK F ++NGYV TI RR + Sbjct: 671 YGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMNRRRYI 730 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 EINS + R+ ER A+NAPIQGSAADI + AM+ V++ + +L ++++LQ+HDELV Sbjct: 731 PEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELV 790 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + ++E+ +I+ +ME I L+VPL V I + NW Sbjct: 791 VDTYKDEVDIVKKILKENMENV----IKLKVPLVVEIGIGPNW 829 Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 155/259 (59%), Gaps = 9/259 (3%) Query: 44 MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103 ML KL++ + + IA + FD A TFR++ Y DYKA R +PE L Q+ L++ Sbjct: 1 MLIKLIEEEKPDYIA----IAFDKKAPTFRHKEYQDYKATRQAMPEELAEQVDLLKEIID 56 Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--- 160 F I +E++G+EADD+I T + +AE++G V +++ D+D +QLVS + + K Sbjct: 57 GFNIKTLELEGYEADDLIGTISKLAEEKGMEVLVVTGDRDALQLVSDKVKVKISKKGITQ 116 Query: 161 -EKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219 E+ D + V++++ I P + + L+ L GD DNIPGIP IG KTA LL+E+G++EN+L Sbjct: 117 MEEFDEKAVLERYEITPYQFIDLKGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLQ 176 Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279 N S++K K +ENI E A +S++L ++ D+PI I E ++D N +L+ L Sbjct: 177 NLSQLKG-KIKENIENNKELAVMSKRLATIKRDIPIEIDFEEYRVKDFNEEKLLEIFNKL 235 Query: 280 EFTKLINRVATTYDCDAAN 298 EF LI+ + + + N Sbjct: 236 EFFSLIDSIKKKDNVEIVN 254 >gi|253577306|ref|ZP_04854624.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14] gi|251843310|gb|EES71340.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14] Length = 886 Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 201/540 (37%), Positives = 329/540 (60%), Gaps = 20/540 (3%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501 + L E + ++ + +E K G+++ LVL +G++ G E D+ L +Y+LD S Sbjct: 357 DVLQSEAAAEVRAWLADEQVPKRGYDLHRADLVLFWHGVAFAGAEHDVQLAAYLLDPTES 416 Query: 502 SHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 I+ +A K+ + + K K +P + + H ++ +L++ L R Sbjct: 417 DQTISGLAAKYQLPQVPGDDEVYGKGAKFKVPEPDV----LSRHLARKADALLRILPLQR 472 Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617 L ++ ++ L+ P+ +++ ME G+ ++++ LK++ E + L IY+++ Sbjct: 473 EDLAKYEMEKLFYELEMPLSRILADMEKQGVAVNKEALKELGVEFEAQINKLVARIYEIA 532 Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677 G++FN++S KQLG+ILF KL P KTKTG + T A+ LE++ + I++ ILE+RQL Sbjct: 533 GQEFNINSTKQLGEILFDKLGLPVIKKTKTG-YSTDAEVLEKL-APYHEIVQFILEYRQL 590 Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 +K++STY + L I+ +T +VHT++ TGRL+S PNLQNIPI+ + G+KIR+ F Sbjct: 591 AKLQSTYVEGLLKEISPKTGKVHTYFRQTIAATGRLSSQYPNLQNIPIRLEEGRKIRKVF 650 Query: 738 ISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794 + P+++ ++SADYSQIELR+LAHI+ L + F + +DIH A ++FGV ++V Sbjct: 651 V--PSEEGWFILSADYSQIELRVLAHISGDPGLQEAFLHDMDIHTKTAMDVFGVGPDQVD 708 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 MRR AK +NF I+YGIS + L+ L I R EAA +I++YF+ F G+ Y+++ + Sbjct: 709 ANMRRSAKAVNFGIVYGISDYGLSQNLNITRKEAARFIEQYFNAFQGVRRYMDEIVKAAK 768 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 ++GYV+T+ RR + EIN+ ++R+ ER A+N PIQG+AADI + AM+ + + L H Sbjct: 769 RDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTPIQGTAADIIKLAMVRMDEELHKH 828 Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L ++MLLQ+HDELVFEVP EE+ S+++ +M KA + L VPLK + NW E Sbjct: 829 GLKSRMLLQVHDELVFEVPPEELEFMSKLVPETMGKA----LELSVPLKAEVSSGLNWYE 884 Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 120/312 (38%), Positives = 180/312 (57%), Gaps = 14/312 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S IYRAF+A P L+ GL NA+ GF NML +L+Q R +H V FD Sbjct: 4 LILIDGNSIIYRAFFAMPPLTNS-SGLHTNAVYGFTNMLLRLIQEER----PTHMLVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 VTFR+E Y +YK R K P L Q PL+R ++FGI E+ G+EADDII T + Sbjct: 59 AGKVTFRHEGYQEYKGGRDKTPPELSEQFPLMRELLESFGIAWFELSGYEADDIIGTLSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AE+ G V +++ DKD++Q+VS + T K E + + +K+G+ P +++ L Sbjct: 119 RAEEAGHEVLVVTGDKDMLQVVSDRVKVALTRKGVSEVEPYGPQQIEEKYGLKPLQIIDL 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD+ DNIPG+PGIG KTA LL +YG++E +L + +K K +EN++ +AE AR+ Sbjct: 179 KGLMGDTSDNIPGVPGIGEKTALKLLHQYGSVEEVLAHTDELK-GKMKENLVNHAEDARM 237 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV----ATTYDCDAAN 298 S++L + +VPI E + + + L+ LEF L+ R+ +AA Sbjct: 238 SKQLATIFREVPIERSWEEMKFDGIPEETAVPMLRKLEFKSLLERMSFAGGENATGEAAR 297 Query: 299 IEPVVLDINTTE 310 E V + + T + Sbjct: 298 AEQVDIQVTTVD 309 >gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] Length = 920 Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 209/558 (37%), Positives = 329/558 (58%), Gaps = 31/558 (5%) Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLD 497 + G+ + +LS LK E++ + K+ N KYD+LVL R G+S+ G D ML SYVL+ Sbjct: 370 TAGEQLSMETVLSALKPILEDQQYPKVFQNAKYDRLVLRRAGVSLTGVVFDPMLASYVLN 429 Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 +SH+++ +A ++L T I +++ ++V ++ + + +L LL+ Sbjct: 430 P-ENSHNLSDLALRYLELTTVSYTDLVPKGKTIGEVAIAEVAQYCGSDVHTTYRLVPLLK 488 Query: 558 PKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 L V L +Y ++ P+ V+++ME TGI+ID+ L Q S ++ +L +E+ YD Sbjct: 489 ADLQEVPDLATLYTEVELPVEPVLAKMEATGIRIDKAYLNQFSKQLESDLAGIEKAAYDA 548 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPS--GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674 +GE+FNL SPKQL ++ F KL K KTG + T A LE++ GD+P++ +++E+ Sbjct: 549 AGEEFNLGSPKQLSELFFEKLGLDKRKSRKNKTG-YSTDAATLEKLQ-GDHPVVDSVVEY 606 Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734 R LSK+KSTY D+LP I T RVHT ++ A T TGRL+S PNLQNIP +T ++IR Sbjct: 607 RTLSKLKSTYVDALPALIRPNTGRVHTDFNQAITTTGRLSSSNPNLQNIPTRTAFSRQIR 666 Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794 +AF+ +L++ADYSQIELRILAH+++ L + + D+HR+ A +F + ++++ Sbjct: 667 QAFLPKEGWQLVAADYSQIELRILAHLSEEPILIKTYREDEDVHRLTATLLFDKDKDEIT 726 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 + RR AK INF +IYG+ R A ++ I R +A +I R+ R+P + EY+++ + Sbjct: 727 VEERRMAKVINFGVIYGMGAARFAREMDIHRLDAKTFIDRFNQRYPNVFEYLQQMQREAI 786 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINE------------------RAAINAPIQGSA 896 GYV+TI GRR +++ +++ + RAA NAPIQGS+ Sbjct: 787 AYGYVKTIAGRRRYFNFTTRSLQALKGTDPTKIDLSSLRTNGYDAGLLRAAANAPIQGSS 846 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI +H+ L+ ++ MLLQ+HDEL+FEVP +E I +ME A + Sbjct: 847 ADIIKVAMIRLHELLKGYQ--ANMLLQVHDELIFEVPPDEWEELQPKIEQTMEDA----V 900 Query: 957 NLRVPLKVNIKVSNNWQE 974 +L VPLKV + NW E Sbjct: 901 SLAVPLKVEAQAGKNWME 918 Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 90/242 (37%), Positives = 128/242 (52%), Gaps = 15/242 (6%) Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + A+ FD TFR+EI YKA R + PE + ++ AF +P + G+EADD Sbjct: 11 YAAITFDLSEPTFRHEITDTYKAGRAETPEEFTEDVENLKALLSAFQLPIFSLPGYEADD 70 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSP----------TTCLYDTVKEEKIDIEHVI 169 +I T A+ +G+ V I+S D+DL QL+ P TT T ++ V+ Sbjct: 71 MIGTLAVRAKGKGYRVKILSGDQDLFQLIDPEEAIKVMYLSTTFGSKTSTTKEYGNAEVL 130 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--K 227 +K I P ++V +AL GD+ DNIPG+ GIG KTA LL YG+LE I + +K K Sbjct: 131 EKLSILPSQVVDYKALCGDTSDNIPGVKGIGKKTAVKLLDTYGDLETIYASIDELKGAVK 190 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 KR E E A S++L ++TDVP+ LE LE N +I LK LE +NR Sbjct: 191 KRLET---GKEDAAQSKQLAKIKTDVPLETDLETCKLEGFNPEDVIPALKQLELQHFVNR 247 Query: 288 VA 289 ++ Sbjct: 248 LS 249 >gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 876 Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 196/479 (40%), Positives = 305/479 (63%), Gaps = 15/479 (3%) Query: 499 GRSSHDIASIAQ--KWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554 +++ D+A++A+ ++ + E + K K ++P + + EH + I L Sbjct: 404 AQAAGDVAAVAKMHQYEAVRSDEAVYGKGAKRTVP----DEPTLAEHLARKAAAIWALEE 459 Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614 L +L + + L++P+ +++ ME TG+++D L+Q+ AE+++ L ++E IY Sbjct: 460 PLMDELRRNEQDRLLTELEQPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIY 519 Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674 +L+G++FN++SPKQLG +LF KL+ P KTKTG + T+A LE++ + I+++IL + Sbjct: 520 ELAGQEFNINSPKQLGTVLFDKLQLPVLKKTKTG-YSTSADVLEKL-APHHEIVEHILHY 577 Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734 RQL K++STY + L ++ T +VHT ++ A T TGRL+S+EPNLQNIPI+ + G+KIR Sbjct: 578 RQLGKLQSTYIEGLLKVVHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIR 637 Query: 735 RAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 +AF+ S P + +ADYSQIELR+LAHIA+ L + F LDIH A +IF V+ E V Sbjct: 638 QAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEEDV 697 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 + MRR AK +NF I+YGIS + LA L I R EAA++I+RYF FPG+ +Y++ Sbjct: 698 TANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQEA 757 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 +Q GYV T+ RR + +I S ++R+ ER A+N PIQGSAADI ++AMI + L + Sbjct: 758 KQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLSVRLRE 817 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +L ++LLQ+HDEL+ E P+EEI +++ ME+A + LRVPLKV+ W Sbjct: 818 ERLQARLLLQVHDELILEAPKEEIERLCRLVPEVMEQA----VALRVPLKVDYHYGPTW 872 Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 119/294 (40%), Positives = 177/294 (60%), Gaps = 9/294 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L E +H V Sbjct: 2 KNKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEQPTHILV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E + DYK R + P L Q PL+R +A+ IPA E+ +EADDII T Sbjct: 57 AFDAGKTTFRHETFQDYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 AE+EGFAV +IS D+DL QL SP + T K E E V++K+G+ PE++ Sbjct: 117 MAARAEREGFAVKVISGDRDLTQLASPQVTVEITKKGITDIESYTPETVVEKYGLTPEQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +EN+ +Y + Sbjct: 177 VDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQYRDL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 A LS++L + D P+ + L+ ++ + + ++++ + L F ++++A D Sbjct: 237 ALLSKQLAAICRDAPVELTLDDIVYKGEDREKVVALFQELGFQSFLDKMAVQTD 290 >gi|315640780|ref|ZP_07895882.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952] gi|315483535|gb|EFU74029.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952] Length = 881 Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 211/509 (41%), Positives = 309/509 (60%), Gaps = 23/509 (4%) Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSI 528 + LHRY S G + D +L Y+LD+ SS+D+A +A ++ + K K + Sbjct: 382 VALHRYVGSPNGIQFDSLLACYLLDTNDSSNDLALVAHRYGLTEIETDEAVYGKGAKKGL 441 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 P D + + H + +L L +L+ + +Y+ ++ P+ ++++MEITGI Sbjct: 442 PED---NERFYSHLARKVATMQKLDTKLSDELVEKGQWTLYKEMELPLSFILAEMEITGI 498 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D L + +E + L +EE IY + E+FNL+SPKQLG ILF K+ P KTKTG Sbjct: 499 HVDAQRLIAMKSEFATKLHDIEEKIYAQANERFNLNSPKQLGVILFEKMGLPVIKKTKTG 558 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T LEQ+ PI+++IL +RQ++KI+STY + L I + +VHT Y T Sbjct: 559 -YSTAVDVLEQLKV-QAPIVEDILTYRQIAKIQSTYVEGLLRMI-QSDGKVHTRYVQTLT 615 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI--SADYSQIELRILAHIAKITP 766 TGRL+S++PNLQNIPI+ + G+KIR+AF+ P K + S+DYSQIELR+LAHI+K Sbjct: 616 QTGRLSSVDPNLQNIPIRLEEGRKIRQAFV-PRNKNWVIYSSDYSQIELRVLAHISKDEH 674 Query: 767 LYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F DIH A +FG+ + E V+P MRR AK +NF I+YGIS + L+ L I R Sbjct: 675 LQAAFIEGQDIHTSTAMRVFGLESAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITR 734 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 +A YI YF R+PG+ Y+E +++GYVET++ RR + ++ + +IR+ ER Sbjct: 735 KQAQQYIDTYFERYPGVKAYMENVVEQAKKDGYVETLYHRRRYLPDLYAKNYNIRSFAER 794 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AIN+PIQGSAADI + AMI ++K L++ KLA MLLQ+HDELVFEVPEEE+ Q++ Sbjct: 795 TAINSPIQGSAADILKIAMIEMNKRLKEEKLAATMLLQVHDELVFEVPEEELAHVDQLVK 854 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A + L +PL + +NW E Sbjct: 855 EVMEHA----VTLAIPLVTD----SNWGE 875 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 108/313 (34%), Positives = 174/313 (55%), Gaps = 14/313 (4%) Query: 4 ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +N L LVDG+S +RAF+A L R +GL NA+ F NM K+++ + +H Sbjct: 3 KNKLLLVDGNSVAFRAFFALHQSLDRFKNANGLHTNALYAFHNMFTKVMEKEK----PTH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR ++Y +YK R K P QLP +R AFG+ E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTQMYAEYKGGRAKTPTEFKEQLPYLRELLDAFGVKHYELPNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175 I T+ A+KE F V I++ D+DL QL + TVK E E + +K+ G+ Sbjct: 119 IGTFAQRADKESFDVVILTGDRDLTQLADEHIKVDITVKGVSEIEAYTPESIAEKYQGLV 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++++ ++ L GDS DNIPG+ IG KTA LL ++G++E I + +K K +EN++ Sbjct: 179 PKQIIDMKGLAGDSSDNIPGVTKIGEKTAIKLLNQFGSVEGIYEHLDELKPSKMKENLIN 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 + A LS+ L + TD P+ + +E L+ + + +L++F + + F +++++ + D D Sbjct: 239 DKDQAFLSKTLATINTDAPVDLTIEQLVYKGQHTEKLVAFYQEMNFQSFLSKLSVS-DAD 297 Query: 296 AANIEPVVLDINT 308 N+ + D T Sbjct: 298 -KNLADISFDYVT 309 >gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44] gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44] Length = 884 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 199/525 (37%), Positives = 320/525 (60%), Gaps = 18/525 (3%) Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL 513 K+ +E K + K + L + ++G + D+++ +Y+LD + D ++A+ Sbjct: 367 KWLADEDMRKYTFDAKRAIVALKWKDVEIKGIDFDLLIAAYLLDPADTDKDFRAVAKMKE 426 Query: 514 SYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569 ++ K E+ K K ++P + V EH +V+ + +L + ++ Sbjct: 427 THAVKSDEEVYGKGAKRAVPEQGV----VAEHVARKVHVLFDVQKTFVEELEKNEQYELF 482 Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629 L+ P+ V+++ME+ G+++D + L+ + E++ L +E+ IY+L+G +FN++SPKQL Sbjct: 483 TELEMPLARVLAEMEVKGVKVDTERLRNMGDELAGRLKEMEQKIYELAGTEFNINSPKQL 542 Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689 G +LF L P KTKTG + T+A L+++ + II NIL +RQL K+ STY + L Sbjct: 543 GVVLFENLNLPVIKKTKTG-YSTSADVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLL 600 Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI--S 747 +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AFI P T+ + + Sbjct: 601 KVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFI-PSTEGWVMYA 659 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIELR+LAHIAK L + F++ +DIH A ++FGV ++V+ MRR AK +NF Sbjct: 660 ADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGEDEVTSNMRRQAKAVNFG 719 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 I+YGIS + L+ L I R A ++I++YF FPG+ EY+++ +Q GYV T+ RR Sbjct: 720 IVYGISDYGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRR 779 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + EI S ++R+ ER A+N PIQGSAADI ++AMI + LE+ L ++LLQ+HDE Sbjct: 780 YIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMANRLEEEGLQARLLLQVHDE 839 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 L+FEVP+EE+ +++ ME A I L VPLKV+ W Sbjct: 840 LIFEVPKEEVEKLEKLVPEVMEHA----IELAVPLKVDYSSGPTW 880 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 174/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 9 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 63 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ + +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 64 AFDAGKTTFRHKTFSEYKGGRQKTPPELSEQFPFIRELLDAFHVPRYELENYEADDIMGT 123 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 124 LAKEASEQGAYVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTTEALFEKYSLSPKQI 183 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++ +E + N ++ KK +E + E Sbjct: 184 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKLEANKEQ 243 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298 A +S++L + TD PIT+ ++ + + +I + L FT L+N++ AT + A Sbjct: 244 ALMSKELATIITDAPITVHVDDIEYKGYEASDVIPMFENLGFTSLLNKLGATPEETVPAE 303 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 304 LDEISFDI 311 >gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 886 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 207/531 (38%), Positives = 323/531 (60%), Gaps = 16/531 (3%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 S LK+ E+ K ++K L+R GI G D++L SY++D+ ++S+D+ + Sbjct: 363 SPLKEMLEDSAVQKNVFDLKRTTYGLYRLGIKAEGLSFDLLLASYLVDNEKNSNDLGELV 422 Query: 510 QKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 Q + Y K L K + + IP D D+ H + I L L +L + Sbjct: 423 QGYDYYDLKTDLEVYGKGKNAKIPAD---DAVFFNHLAGKTAAIAALKDSLLKQLKDHEQ 479 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 +Y+ ++ P V+++ME+ GI++ LK++ + + L LEE IY +GE+FNL+S Sbjct: 480 DDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNS 539 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQLG ILF KL P KTKTG + T+ + L Q+ +P++ +ILE+RQ+SKI+STY Sbjct: 540 PKQLGVILFEKLGLPVIKKTKTG-YSTSVEVLNQLKE-QSPVVSDILEYRQISKIQSTYV 597 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 L + I++R R+HT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P Sbjct: 598 KGLLDVIDERDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSPDGY 657 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKT 803 + S DYSQIELR+LAH++ + + F+ DIH A +IF ++ +++V+ RR AK Sbjct: 658 IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKA 717 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R +A ++I YF ++PGI Y++ R+ GY ETI Sbjct: 718 VNFGIVYGISDYGLSKNLDISRKQAKEFIDEYFDQYPGIQAYMDWAVKDAREKGYAETIM 777 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I++ ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TKM++Q Sbjct: 778 HRRRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQ 837 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDEL+F+VP +E+ T +I+ M+ A + L VPL + ++W E Sbjct: 838 VHDELIFDVPADELETIQKIVPSVMQAA----VKLDVPLVADASWGHDWYE 884 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 155/290 (53%), Gaps = 11/290 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAF+A K +GL NA+ F NML +L K+ SH V Sbjct: 5 LLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVL----KQEDPSHILV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR +Y DYK R K P L Q P +R + GI + E+ +EADDII T Sbjct: 61 AFDAGKTTFRTAMYKDYKGGRDKAPAELSEQFPYLREMLKDMGIKSYELANYEADDIIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + G+ V ++S DKDL QL S +Y T K E +H+ + G+ P + Sbjct: 121 MAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNGVTPTEF 180 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD DN PG+ +G KTA+ L+QEYG++EN+ + +K+ K +EN++ + Sbjct: 181 IDMKALMGDPSDNYPGVAKVGPKTASKLIQEYGSVENLYDHVDEMKKSKLKENLIAGKDN 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A L +KL ++ D P+ + L+ L E N L F + + F + + +A Sbjct: 241 ALLGKKLATIKCDSPVEVTLDDLSYEGSNVDDLRRFYEKMNFRRFLADLA 290 >gi|307266790|ref|ZP_07548314.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918183|gb|EFN48433.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1] Length = 561 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 210/523 (40%), Positives = 322/523 (61%), Gaps = 36/523 (6%) Query: 467 HNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL 521 H IK D LV Y GI + + D +M+Y+L+ S++D+ + +K+L + +E+ Sbjct: 54 HEIK-DFLVKLSYKGIECKSKYIDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVF 112 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK------- 574 + +++I + + ++ + L EKL++ E +D Sbjct: 113 GKGRDKKKLEEIGEDILADYICSRCVHLFDLR---------EKLMNFIEEMDMKKLLLEI 163 Query: 575 --PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 P+++V+ ME++G +D+++LK++S +I + + + IY +G +FN++SPKQL + Sbjct: 164 EMPLVEVLKLMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQFNVNSPKQLSEF 223 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNH 691 LF KL P KTKTG + T ++ LEQ+ N ++ +I+E+RQL+K+KSTY D LP Sbjct: 224 LFEKLNLPVIKKTKTG-YSTDSEVLEQL-VPYNDVVSDIIEYRQLTKLKSTYIDGFLP-- 279 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749 + RVH+ + T TGR++S EPNLQNIPI+ + G++IRRAFI P TK ++SAD Sbjct: 280 LMDENNRVHSNFKQMVTATGRISSTEPNLQNIPIREEFGRQIRRAFI-PRTKDGYIVSAD 338 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAH++ L + F N+ DIH AAE+F V +EKV+P+MRR AK +NF II Sbjct: 339 YSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNFGII 398 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + L+ L+I R EA +YI YF R+ G+ EYIEK F ++NGYV TI RR + Sbjct: 399 YGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMNRRRYI 458 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 EINS + R+ ER A+NAPIQGSAADI + AM+ V++ + +L ++++LQ+HDELV Sbjct: 459 PEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELV 518 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + ++E+ +I+ +ME I L+VPL V I + NW Sbjct: 519 VDTYKDEVEIVKKILKENMENV----IKLKVPLVVEIGIGPNW 557 >gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200] gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200] Length = 872 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 210/523 (40%), Positives = 322/523 (61%), Gaps = 36/523 (6%) Query: 467 HNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL 521 H IK D LV Y GI + + D +M+Y+L+ S++D+ + +K+L + +E+ Sbjct: 365 HEIK-DFLVKLSYKGIECKSKYIDTAVMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVF 423 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK------- 574 + +++I + + ++ + L EKL++ E +D Sbjct: 424 GKGRDKKKLEEIGEDILADYICSRCVHLFDLR---------EKLMNFIEEMDMKKLLLEI 474 Query: 575 --PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 P+++V+ ME++G +D+++LK++S +I + + + IY +G +FN++SPKQL + Sbjct: 475 EMPLVEVLKLMEVSGFTLDKEVLKELSQKIDDRIAEILDKIYKEAGYQFNVNSPKQLSEF 534 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LPNH 691 LF KL P KTKTG + T ++ LEQ+ N ++ +I+E+RQL+K+KSTY D LP Sbjct: 535 LFEKLNLPVIKKTKTG-YSTDSEVLEQL-VPYNDVVSDIIEYRQLTKLKSTYIDGFLP-- 590 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749 + RVH+ + T TGR++S EPNLQNIPI+ + G++IRRAFI P TK ++SAD Sbjct: 591 LMDENNRVHSNFKQMVTATGRISSTEPNLQNIPIREEFGRQIRRAFI-PRTKDGYIVSAD 649 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAH++ L + F N+ DIH AAE+F V +EKV+P+MRR AK +NF II Sbjct: 650 YSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNFGII 709 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + L+ L+I R EA +YI YF R+ G+ EYIEK F ++NGYV TI RR + Sbjct: 710 YGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMNRRRYI 769 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 EINS + R+ ER A+NAPIQGSAADI + AM+ V++ + +L ++++LQ+HDELV Sbjct: 770 PEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHDELV 829 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + ++E+ +I+ +ME I L+VPL V I + NW Sbjct: 830 VDTYKDEVDIVKKILKENMENV----IKLKVPLVVEIGIGPNW 868 Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 115/296 (38%), Positives = 181/296 (61%), Gaps = 10/296 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DGSS +YRA+YA P+L+ +GL NA+ GF ML KL++ + + I A+ FD Sbjct: 4 FLVIDGSSLMYRAYYALPMLT-TSEGLHTNALYGFTMMLIKLIEEEKPDYI----AIAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y DYKA R +PE L Q+ L++ F I +E++G+EADDII T + Sbjct: 59 KKAPTFRHKEYQDYKATRQAMPEELTEQVDLLKEIIDGFNIKTLELEGYEADDIIGTISK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 +AE++G V +++ D+D +QLVS + + K E+ D + V++++ I P++ + L Sbjct: 119 LAEEKGMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEEFDEKAVLERYEITPQQFIDL 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPGIP IG KTA LL+E+G++EN+L N S++K K +ENI E A + Sbjct: 179 KGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLQNLSQLKG-KIKENIENNKELAVM 237 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 S++L ++ D+PI I E ++D N +L+ LEF LI+ + + + N Sbjct: 238 SKRLATIKRDIPIEIDFEEYRVKDFNEEKLLELFNKLEFFSLIDNIKKKNNVEIVN 293 >gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 889 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 207/531 (38%), Positives = 322/531 (60%), Gaps = 16/531 (3%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 S LK E+ K ++K L+R GI D++L SY++D+ ++S+D+ + Sbjct: 366 SPLKGMLEDSAVQKNVFDLKRTTYGLYRLGIKAESLTFDLLLASYLVDNEKNSNDLGELV 425 Query: 510 QKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 Q + Y K L K + + IP D D+ H + I L L +L + Sbjct: 426 QGYDYYDLKTDLEVYGKGKNAKIPAD---DAVFFNHLAGKTAAIAALKDSLLKQLKDHEQ 482 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 +Y+ ++ P V+++ME+ GI++ LK++ + + L LEE IY +GE+FNL+S Sbjct: 483 DDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNS 542 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQLG ILF KL P KTKTG + T+ + L Q+ +P++ +ILE+RQ+SKI+STY Sbjct: 543 PKQLGVILFEKLGLPVIKKTKTG-YSTSVEVLNQLKE-QSPVVSDILEYRQISKIQSTYV 600 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 L + I+KR R+HT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P Sbjct: 601 KGLLDVIDKRDGRIHTRYLQTLTATGRLSSVDPNLQNIPARTEEGKQIRKAFVPSSPDGY 660 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKT 803 + S DYSQIELR+LAH++ + + F+ DIH A +IF ++ +++V+ RR AK Sbjct: 661 IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKA 720 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R +A ++I YF ++PGI Y+++ R+ GY ETI Sbjct: 721 VNFGIVYGISDYGLSKNLDISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIM 780 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I++ ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TKM++Q Sbjct: 781 HRRRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQ 840 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDEL+F+VP +E+ T +I+ M+ A + L VPL + ++W E Sbjct: 841 VHDELIFDVPADELETIQKIVPSVMQAA----VKLDVPLVADAGWGHDWYE 887 Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 104/290 (35%), Positives = 154/290 (53%), Gaps = 11/290 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAF+A K +GL NA+ F NML +L K+ SH V Sbjct: 8 LLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVL----KQEDPSHILV 63 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR +Y DYK R K P L QLP +R + GI + E+ +EADDII T Sbjct: 64 AFDAGKTTFRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEADDIIGT 123 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + G+ V ++S DKDL QL S +Y T K E +H+ + G+ P + Sbjct: 124 MAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNGVTPTEF 183 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD DN PG+ +G KTA L+QEYG++EN+ + +K+ K +EN++ + Sbjct: 184 IDMKALMGDPSDNYPGVAKVGPKTAFKLIQEYGSVENLYNHVDEMKKSKLKENLIASKDN 243 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A L +KL + D P+ + L+ L E N L F + + F + + +A Sbjct: 244 ALLGKKLATINCDSPVEVTLDDLSYEGSNIDDLRRFYEKMNFRRFLADLA 293 >gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea sp. MED297] gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297] Length = 933 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 195/544 (35%), Positives = 318/544 (58%), Gaps = 22/544 (4%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRGFEDIMLMSYVLDS------GR 500 E+ + L FE+ +K G++IK D + IS R D+ +M++V DS Sbjct: 393 EVFNKLIPLFEDHAIVKTGYDIKADYHWFNALNISPSRLLNDVQVMAFVYDSTLKRDKSL 452 Query: 501 SSH----DIASIAQKWLSYTRKEI----LKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552 S+H I ++ ++L + K + K+ K + + + + E ++ +L+L Sbjct: 453 SAHFSHLSIDNLVIQYLQKSPKTVEDYLGKAGKRQLSPSAVKADDIGQWWAERADFVLRL 512 Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612 L L +L VY+ +++P+ ++ +E G+++D + + ++S ++L +E Sbjct: 513 GQWLEQGLASRQLSRVYQEIERPLSKTLAAIEENGVKLDVEFVHELSTRFKRDLEDIERQ 572 Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672 +DL+G +FNL SPKQL D+LF ++ P +KT +G T + L ++ ++ + + IL Sbjct: 573 AHDLAGVEFNLDSPKQLADVLFERMGLPVKSKTASGAPSTNEEVLTEL-AAEHELPRLIL 631 Query: 673 EWRQLSKIKSTYADSLPNHI--NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730 + R+L K+ TY D LP + QR+HT Y+ TGRL S +PNLQNIP++++ G Sbjct: 632 QSRRLRKLVGTYTDPLPTMTIDHDGDQRLHTTYNQTGAQTGRLNSNDPNLQNIPVRSEEG 691 Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790 + IR+AF++P ++++ADYSQIELRI+ H+++ L Q F DIHR AAE+ G+ Sbjct: 692 RSIRKAFVAPQGYRIVAADYSQIELRIMTHLSQDANLIQAFREGKDIHRATAAEVMGIEE 751 Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850 E+VS + RR AK INF +IYG+S F LA QL I R+EA Y+ YF R+PG+ Y+++T+ Sbjct: 752 EQVSAEQRRSAKAINFGLIYGMSAFGLARQLGISRTEAKTYVDAYFERYPGVRRYMDETR 811 Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910 ++GYVET+FGRR++ I S R ER AINAP+QG+AADI + AM+ V Sbjct: 812 AEAAESGYVETVFGRRLYLPGIQSSNQIARKAAERTAINAPMQGTAADIIKMAMVDVDNW 871 Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970 L + L +M++Q+HDELVFEV E+++ ++ + M+ NL VPL V++ Sbjct: 872 LSNSSLRARMIMQVHDELVFEVHEDDVAALTEGVRFRMQHCA----NLDVPLIVDVDTGA 927 Query: 971 NWQE 974 +W+E Sbjct: 928 SWEE 931 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 110/289 (38%), Positives = 159/289 (55%), Gaps = 11/289 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDGSS+++RAF+A P L+ +GL AI G +ML LL K S AV+FD Sbjct: 8 VVLVDGSSYLFRAFHALPPLANS-EGLQTGAIKGVVSMLRNLL----KMYPDSPVAVVFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFRNE+Y YKANRP +PE L Q+ + +A G+P + I G EADD+I T Sbjct: 63 AKGPTFRNEMYDQYKANRPPMPEELREQIEPIHDCVRAMGLPLLCIPGVEADDVIGTLAA 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A G I + DKD+ QLVSP L +T+K E +D+ V K+G P+KM+ AL Sbjct: 123 QATSCGRDCVISTGDKDMAQLVSPHVTLINTMKNETMDVPGVETKYGFGPDKMIDYLALM 182 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAETA 240 GD +DNIPG+PG+G KTA L+Q G L++I +K K + ++ E A Sbjct: 183 GDKVDNIPGVPGVGEKTALALIQGLGGLDDIYSRLDEVKDLTFRGAKTMAAKLEQHKEQA 242 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 LS +L ++ DV + + + + + RL++ K EF + ++ Sbjct: 243 YLSYELATIKLDVELETTINDIQPDPIDNDRLLALFKRFEFRTWVREMS 291 >gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 886 Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 207/531 (38%), Positives = 323/531 (60%), Gaps = 16/531 (3%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 S LK+ E+ K ++K L+R GI G D++L SY++D+ ++S+D+ + Sbjct: 363 SPLKEMLEDSAVQKNVFDLKRTTYGLYRLGIKAEGLSFDLLLASYLVDNEKNSNDLGELV 422 Query: 510 QKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 Q + Y K L K + + IP D D+ H + I L L +L + Sbjct: 423 QGYDYYDLKTDLEVYGKGKNAKIPAD---DAVFFNHLAGKTAAIAALKDSLLKQLKDHEQ 479 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 +Y+ ++ P V+++ME+ GI++ LK++ + + L LEE IY +GE+FNL+S Sbjct: 480 DDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNS 539 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQLG ILF KL P KTKTG + T+ + L Q+ +P++ +ILE+RQ+SKI+STY Sbjct: 540 PKQLGVILFEKLGLPVIKKTKTG-YSTSVEVLNQLKE-QSPVVSDILEYRQISKIQSTYV 597 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 L + I++R R+HT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P Sbjct: 598 KGLLDVIDERDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSPDGY 657 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKT 803 + S DYSQIELR+LAH++ + + F+ DIH A +IF ++ +++V+ RR AK Sbjct: 658 IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKA 717 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R +A ++I YF ++PGI Y++ R+ GY ETI Sbjct: 718 VNFGIVYGISDYGLSKNLDISRKQAKEFINEYFDQYPGIQAYMDWAVKDAREKGYAETIM 777 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I++ ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TKM++Q Sbjct: 778 HRRRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQ 837 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDEL+F+VP +E+ T +I+ M+ A + L VPL + ++W E Sbjct: 838 VHDELIFDVPADELETIQKIVPSVMQAA----VKLDVPLVADASWGHDWYE 884 Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 104/290 (35%), Positives = 156/290 (53%), Gaps = 11/290 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAF+A K +GL NA+ F NML +L K+ SH V Sbjct: 5 LLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVL----KQEDPSHILV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR +Y DYK R K P L QLP +R + GI + E+ +EADDII T Sbjct: 61 AFDAGKTTFRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEADDIIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + G+ V ++S DKDL QL S +Y T K E +H+ + G+ P + Sbjct: 121 MAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNGVTPTEF 180 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD DN PG+ +G KTA+ L+QEYG++EN+ + +K+ K +EN++ + Sbjct: 181 IDMKALMGDPSDNYPGVAKVGPKTASKLIQEYGSVENLYYHVDEMKKSKLKENLIAGKDN 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A L +KL ++ D P+ + L+ L E N L F + + F + + +A Sbjct: 241 ALLGKKLATIKCDSPVEVTLDDLSYEGSNVDDLRRFYEKMNFRRFLADLA 290 >gi|315038863|ref|YP_004032431.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] gi|312276996|gb|ADQ59636.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] Length = 887 Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 209/527 (39%), Positives = 324/527 (61%), Gaps = 17/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 +K E+E K ++K + HR GI +G + D++L SY++++ +S+D+ IA Sbjct: 367 IKHILEDEKIKKNVFDLKRTMVAAHRLGIHTQGLDYDMLLASYLINNENNSNDLGEIAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K + IP D D ++ H N I +L L KL + Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKVNAIEKLKPELLKKLKEHEQDA 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ ++ P V+++ME+ G++++ L Q+ E + L LE+ IY +GEKFNL+SPK Sbjct: 484 LFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAGEKFNLNSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + L+Q+ +PI+ IL++RQ++KI+STY Sbjct: 544 QLGHILFEKLGLPVIKKTKTG-YSTSVEVLDQLKM-QSPIVSEILDYRQIAKIQSTYVKG 601 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + I + RVHT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P + Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 660 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S DYSQ+ELR+LAH++ + + F+ DIH A +IF ++ ++V+P MRRHAK +N Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVN 720 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R A ++I YF ++P I +Y++K R GY ETI R Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMHR 780 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ K ++R ER AIN+PIQGSAADI + AMI++ K L++ L TKM++Q+H Sbjct: 781 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVH 840 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883 Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 116/331 (35%), Positives = 179/331 (54%), Gaps = 21/331 (6%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L S K DGL NAI F NML LL K+ +H V Sbjct: 6 LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDIDPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y +YK R K PE LL Q+P ++ GI E++ +EADDII T Sbjct: 62 AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + EK GF T+++ D+DL QL S T + T + E EH+ + G+ P + Sbjct: 122 FVDKGEKNGFTTTVVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GDS DN PG+ +G KTA+ L+Q+YG++E I + +K+ K +EN++ + Sbjct: 182 IDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSVEGIYDHIDEMKKSKLKENLINDKDK 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298 A L++KL + D P+T+ ++ + + + +L F + + F K + + A+ D+ Sbjct: 242 AFLAKKLATIDRDSPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKFLADLNASGAGQDSTE 301 Query: 299 IEPV---------VLDINTTENKGIAIETEI 320 +E V V D+ TE + E+ Sbjct: 302 VEKVEYIVLNDDNVKDVKATEKDTVEFYLEM 332 >gi|309807121|ref|ZP_07701098.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b] gi|308166472|gb|EFO68674.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b] Length = 512 Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 206/517 (39%), Positives = 321/517 (62%), Gaps = 24/517 (4%) Query: 468 NIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEIL--- 521 ++K + + L R GI++ +DIML SY+ DS ++ D+ +A + + EI+ Sbjct: 8 DLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANSYQEFYVQSDEIIYGK 67 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 ++ S+ +D + H +V+ +L + P+L + LH+Y+ ++ P+ +++ Sbjct: 68 GKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILA 122 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI++ L ++ ++ + L+ IY L+GEKFN++SPKQLG ILF KLK Sbjct: 123 KMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFEKLKLTP 182 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG + T+ LE++ +PI+ +IL++RQ+SKI+STY + L ++I + ++HT Sbjct: 183 AKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYINGLLDYI-QADGKIHT 239 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRIL 758 + T TGRL+S+EPNLQNIP+K + G++IR+AF+ P K+ L S DYSQ+ELR+L Sbjct: 240 RFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDSYLFSCDYSQVELRVL 297 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRL 817 AH++ + + F+ DIH A +IFG+ N+++V+P MRRHAK +NF I+YGIS + L Sbjct: 298 AHVSHEKNMLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGL 357 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 A L I R EA ++I YF ++P I +Y++ R+ GY ETI RR +I++ Sbjct: 358 AKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNF 417 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 +IR+ ER AIN+PIQGSAADI + AMI + LE KL TKM+LQIHDEL+F+VP EE+ Sbjct: 418 NIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEEL 477 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ M++A L VPL + +NW E Sbjct: 478 DLIRTLVPEIMQQAA----QLDVPLIADANWGHNWYE 510 >gi|310641223|ref|YP_003945981.1| DNA polymerase i [Paenibacillus polymyxa SC2] gi|309246173|gb|ADO55740.1| DNA polymerase I [Paenibacillus polymyxa SC2] Length = 884 Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 207/539 (38%), Positives = 327/539 (60%), Gaps = 18/539 (3%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501 N L + + ++++ + K GH++ L LH +GI G E D+ L Y+LD + Sbjct: 355 NVLQSDAATPIREWLADPERKKRGHDLHRTDLALHWHGIEFAGAEFDVQLAGYLLDPTDA 414 Query: 502 SHDIASIAQKW-LSYTRKE---ILKSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLL 556 + ++ +A K+ LS R + K K +P +D +SD ++ A+ + V +Q L Sbjct: 415 NQTLSGLAAKYGLSSIRPDDEVFGKGAKYKVPEMDVLSDHVARKAAVIEALVPVQQAELE 474 Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 + ++ KL H L+ P+ +++ ME GI ++ + L+ + E + +L IY + Sbjct: 475 KTEM--HKLFH---ELEMPLSRILADMEKQGILVNVEELRALGKEFEAQIATLVGEIYSI 529 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +G +FNL+SPKQLG+ILF KL P KTKTG + T A+ LE++ + I++NIL++R Sbjct: 530 AGVEFNLNSPKQLGEILFDKLGLPVIKKTKTG-YSTDAEVLEKL-APYHDIVQNILQYRT 587 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 ++K++STY + L I+++T +VHT++ TGRL+S PNLQNIPI+ + G+KIR+ Sbjct: 588 IAKLQSTYVEGLLKEISEKTGKVHTYFRQTVAATGRLSSQFPNLQNIPIRLEEGRKIRKV 647 Query: 737 FI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F+ S P +++ADYSQIELR+LA I+ L + F + +DIH A+++FGV E V Sbjct: 648 FVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHDMDIHTKTASDVFGVPAEAVDS 707 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 MRR AK +NF I+YGIS + L+ L I R EAA +I +YF F G+ Y++ ++ Sbjct: 708 DMRRSAKAVNFGIVYGISDYGLSQNLNITRKEAARFIDQYFDVFQGVRRYMDDIVKDAKR 767 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 +GYV+T+ RR + EIN+ + R+ ER A+N PIQG+AADI + AM+ + +L + Sbjct: 768 DGYVKTLLERRRYLPEINASNFNQRSFAERTAMNTPIQGTAADIIKLAMVQMDAALRERN 827 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L ++MLLQ+HDELVFEVP EE+ T +++ +ME A + L VPLK + +NW E Sbjct: 828 LRSRMLLQVHDELVFEVPPEEMETMKELVPATMEAA----LKLAVPLKAEVSYGSNWYE 882 Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 110/299 (36%), Positives = 171/299 (57%), Gaps = 10/299 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG+S IYRAF+A P L+ G NA+ GF ML +LL+ + +H V Sbjct: 2 DKLMLIDGNSIIYRAFFAMPPLTNS-SGQQTNAVYGFTTMLLRLLEEHK----PTHILVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD +TFR++ Y DYK R K P L Q PL++ AFGI E+ G+EADDII T Sbjct: 57 FDAGKITFRHKGYEDYKGGREKTPPELSQQFPLLKELLTAFGIAQFELDGYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 + A++ GF V +++ DKD++QL S + T K E E + +++G+ P +++ Sbjct: 117 SRTADEAGFNVLVVTGDKDMLQLASDHVTVGLTRKGVTEVETYGPEQIQERYGLKPLQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+ L GD+ DNIPGIPG+G KTA LL +YG++E +L + +K K +E + +A+ A Sbjct: 177 DLKGLMGDTSDNIPGIPGVGEKTALKLLHQYGSVEEVLAHTDELK-GKMKERVETHADDA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 R+S++L + DV + LE ++ L LEF L+ R++ + + +A + Sbjct: 236 RMSKELATIYRDVTLDKQLEDVVFSGLQAETAGPALAKLEFKSLLERLSLSGEVGSAGV 294 >gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism HF4000_APKG10H12] Length = 891 Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 194/528 (36%), Positives = 310/528 (58%), Gaps = 11/528 (2%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507 + L E+ KIGH++K D L L + I +RG E D M+ SY+LD+ R++ + + Sbjct: 366 VFGTLGPMLEDPQVRKIGHDLKRDMLWLAAHEIRLRGLELDTMIASYLLDATRTTPTVET 425 Query: 508 IAQKWLSYTR--KEILKSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 +A + Y + ++ + + P D++ V +A E +++ LQ LR +L E+ Sbjct: 426 VALEHAGYQALTADTVRGKGAKAPDFDRLPPDGVLAYACERADLPLQAAEPLRARLDQER 485 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L +Y L++P+I V++ +E GIQ+ D L S + +L L+ IY L+GE+FN++ Sbjct: 486 LAELYRELEQPLIPVLADIETAGIQVATDALAVQSRRMDADLSELQSQIYTLAGEEFNIN 545 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SP+QL ILF KL P+ KT + +TA D+ + + + + ++EWR + K+K TY Sbjct: 546 SPRQLSAILFEKLALPTRKKTGKTRAASTAADVLEELAQHHALPRLVIEWRAVQKLKGTY 605 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 D+LP + T RVHT ++ A TGRL+S +PNLQNIPI+T LG++IRRAF++ Sbjct: 606 VDALPQLVRPDTGRVHTSFNQAVAATGRLSSSDPNLQNIPIRTPLGREIRRAFVARDGHV 665 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 LISADYSQIELR+LAH++ T L Q F + DIH A +FG + + ++RR AK I Sbjct: 666 LISADYSQIELRVLAHLSADTALTQAFIRNEDIHDKTALHVFGPDSGLDAHELRRRAKII 725 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 N++++YG + F L+ + + A +I YF +P + +++ + R++G V T+FG Sbjct: 726 NYALLYGKTAFTLSRDIGVTPQAAQAFIDAYFEGYPAVRGFLDGVIDEARESGEVRTMFG 785 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR E+ + IR ER +N PIQG+AADI +RAMI + +L + M+L + Sbjct: 786 RRRLVPELRNRNGQIRAAAERVTVNMPIQGTAADILKRAMIDLAGALPP---SAPMILTV 842 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+ E P +E + + ++ ME+A +L VPL+V++ + NW Sbjct: 843 HDELLIEPPRDEADSVADLVRDRMERAA----DLTVPLRVDVGIGENW 886 Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 110/295 (37%), Positives = 165/295 (55%), Gaps = 6/295 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M LFL+DG++ +YRA++A L+ DG NA+ GF ML KLL + + + +A+ Sbjct: 1 MPSTPRLFLIDGNNQMYRAYHALHGLT-GPDGRSTNAVYGFITMLRKLLSDQQPDLVAA- 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 FD TFR+E+ DYKA R +PE L+ Q+ V A A G+P + GFEADD+ Sbjct: 59 ---AFDLKGPTFRHELAADYKATRRPMPEDLVEQVSWVHEACAALGVPVVTHAGFEADDV 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-IDIEHVIKKWGIPPEKM 179 I T A G V +++ DKD QLV +++ E D V++K+G+ P+++ Sbjct: 116 IGTLATQAVAAGLEVVVVTGDKDFFQLVGDRIRVFNPRDEGAWYDDAGVLEKFGVRPDQV 175 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 V + AL GD+ DN+ G+PGIG K A LL ++G+L+ +L +A + +KK R + E+A+ Sbjct: 176 VDVLALMGDASDNVKGVPGIGEKGARELLADFGSLDWLLDHADELPKKKYRTALTEHADN 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 AR SR+LV L TDVP+ E + R + L F L++ A T D Sbjct: 236 ARRSRELVRLVTDVPVPYEPERYRYRGADRTRCFTLFSELGFKSLVSEFAPTADS 290 >gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9] gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9] Length = 885 Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 201/536 (37%), Positives = 315/536 (58%), Gaps = 16/536 (2%) Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH 503 L L +++++ + K G ++ +L L +GI+++G DI L +Y+LD S+ Sbjct: 358 LQASALGFVREWLADADMEKAGFDLHRTELSLAWHGIALKGISFDIQLAAYLLDPTDSTQ 417 Query: 504 DIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559 I+ + K+ + K K +P + + H ++ + + + R + Sbjct: 418 SISGLCGKYGLPTVQADESVYGKGAKFKLPEAGV----LHGHIASKTDAVRSIAAIQREE 473 Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 L + +Y L++P+ V++ ME+ GI+ D +++Q+ AE+ + + +Y L+G Sbjct: 474 LEKTGMHKLYYDLEQPLSRVLAGMELQGIRCDASVIEQLGAELESRISDIMTKVYTLAGM 533 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 +FN++SP+QLG++LF KL P KTKTG + T A LE++ + II +IL +RQL+K Sbjct: 534 EFNINSPRQLGEVLFEKLGLPVIKKTKTG-YSTDADVLEKLEP-YHEIIPSILLFRQLAK 591 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI- 738 ++STY + L I T ++HT+Y TGRL+S PNLQNIPI+ + G++IR+AF+ Sbjct: 592 LQSTYVEGLLKEIRPNTGKIHTYYRQTIAATGRLSSQYPNLQNIPIRLEEGRQIRKAFVP 651 Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 S P +++ADYSQIELR+LAHI+ L + F LDIH A+++FGV E V MR Sbjct: 652 SEPGWFMLAADYSQIELRVLAHISGDEGLKEAFVQDLDIHTKTASDVFGVRPEDVDANMR 711 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 R AK +NF I+YGIS F L+ L I R EAA +I++YF F G+ Y++ R +GY Sbjct: 712 RQAKAVNFGIVYGISDFGLSNNLNITRKEAAQFIEQYFAAFQGVRRYMDNIVAQARTDGY 771 Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 V T+ RR + EI + +IR+ ER A+N PIQG+AADI + AM+ + + L L + Sbjct: 772 VTTLLERRRYLPEIKASNFNIRSFAERTAMNTPIQGTAADIIKLAMVRMDEQLRARGLRS 831 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +MLLQ+HDELVFEVP +E+ +++ ME A I L VPLK ++ +NW E Sbjct: 832 RMLLQVHDELVFEVPADELELMKELVPQVMESA----IKLDVPLKADVSFGDNWYE 883 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 175/302 (57%), Gaps = 10/302 (3%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+DG+S +RAFYA PLL+ GL NA+ GF ML KLL+ E +H V FD Sbjct: 6 LIDGNSIAFRAFYALPLLTNA-SGLHTNAVFGFTTMLLKLLE----EEQPTHMLVAFDAG 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 +TFR+E Y +YK R K P L Q PL++ QAFGI E+ G+EADDII T T +A Sbjct: 61 KITFRHEGYSEYKGGRQKTPSELSEQFPLIKELLQAFGISQFELSGYEADDIIGTLTRMA 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQA 184 +++G V ++S DKD++QL S + T K ++ + +++G+ P +++ L+ Sbjct: 121 DEQGAEVLVVSGDKDMLQLASDQVTVAITRKGVGDVDRYSPALIHERYGLAPLQIIDLKG 180 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD+ DNIPGIPG+G KTA LL EYG++E +L + + +K K +E + ++ + A +S+ Sbjct: 181 LMGDTSDNIPGIPGVGEKTALKLLHEYGSVEGVLEHVADLK-GKMKEKVEQHKDDAIMSK 239 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 KL + +VP+ + + P L L+ LEF L+ R+ T + + + L Sbjct: 240 KLATIFREVPLDRGTSEMAYGGYDRPTLAGALRKLEFKSLLERLDLTGEGTGSTVAAAEL 299 Query: 305 DI 306 ++ Sbjct: 300 NV 301 >gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032] gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032] Length = 879 Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 204/507 (40%), Positives = 318/507 (62%), Gaps = 20/507 (3%) Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL-KSRKSSI 528 + L + + ++G + D++L SYV++ ++ D+AS+A+++ ++ + +++ K K +I Sbjct: 381 VALRWHDVDLKGVDNDVLLASYVVNPQKTYEDVASVAKEYGLNIALSDEKVYGKGAKQAI 440 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 P + +++EH + I L L L +YE L+ P+ ++ +ME G+ Sbjct: 441 P----PEDELKEHLGRKAAAISALHDLTLEALEKNDQHELYEDLELPLALILGEMESLGV 496 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ++D L+ + E++K L EE I+ L+GE FN++SPKQLG ILF KL P KTKTG Sbjct: 497 KVDIKRLENMGEELTKKLKEYEETIHRLAGETFNINSPKQLGVILFEKLGLPIIKKTKTG 556 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T+A LE++ + II++IL +RQ+ K++STY + L K T +VHT ++ A T Sbjct: 557 -YSTSADVLEKLE-DKHEIIRSILHYRQIGKLQSTYVEGLMKVTRKDTHKVHTRFNQALT 614 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKIT 765 TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+K+ + +ADYSQIELR+LAHI++ Sbjct: 615 QTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSKEGWLMFAADYSQIELRVLAHISQDE 672 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L + F +DIH A ++F V+ E+V+ MRR AK +NF I+YGIS + L+ L I R Sbjct: 673 NLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITR 732 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EAA +I+RY F G+ Y+E+ +Q GYV T+ RR + +I S +I++ ER Sbjct: 733 KEAAAFIERYLTSFKGVKTYMEEIVQEAKQKGYVTTLLKRRRYIPDITSRNFNIKSFAER 792 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 A+N PIQGSAADI ++AMI + + L++ KL T +LLQ+HDEL+FE P+EEI +I+ Sbjct: 793 TAMNTPIQGSAADIIKKAMIDMARRLKEEKLQTNLLLQVHDELIFEAPKEEIAILEKIVP 852 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972 ME A + L VPLKV+ +W Sbjct: 853 EVMENA----LQLDVPLKVDFASGPSW 875 Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 113/299 (37%), Positives = 170/299 (56%), Gaps = 9/299 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDG+S YRAF+A PLLS G+ NAI GF +L K+L++ + +H Sbjct: 1 MTDKKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAIYGFAMILMKMLEDEK----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R K P L Q+P +R A+ + E+ +EADDI Sbjct: 56 MLVAFDAGKTTFRHETFKEYKGGRQKTPPELSEQMPFIRELLDAYQVKRYELPQYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T AEK+GF V I S DKDL QL + T + T K E H+ +K+G+ P Sbjct: 116 IGTLAVEAEKDGFEVKIFSGDKDLTQLSTDHTTVAITKKGITEVEYYTPAHIEEKYGLRP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 ++++ ++ L GDS DNIPG+PG+G KTA LL+++ +EN+L + + KK +E + E+ Sbjct: 176 DQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFETVENLLEHIDEVSGKKLKEKLEEF 235 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E A +S++L + + PI + + L E + ++IS K L F L+ R+ + D Sbjct: 236 KEQAVMSKELATILVEAPIDVSSKDLAYEGPHMDQVISLYKELGFQTLLERLGEAPETD 294 >gi|299688943|pdb|3HPO|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus Y714s Mutant Bound To G:t Mismatch Length = 580 Score = 365 bits (936), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 195/463 (42%), Positives = 296/463 (63%), Gaps = 33/463 (7%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP-----------KLIVEKLLHVYE 570 K K ++P + + + EH + + I W L RP +L+VE Sbjct: 135 KGAKRAVPDEPV----LAEHLVRKAAAI---WELERPFLDELRRNEQDRLLVE------- 180 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 L++P+ ++++ME G+++D L+Q+ E+++ L ++E+ IY+L+G++FN++SPKQLG Sbjct: 181 -LEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLG 239 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL+ P KTKTG + T+A LE++ + I++NIL +RQL K++STY + L Sbjct: 240 VILFEKLQLPVLKKTKTG-YSTSADVLEKL-APYHEIVENILHYRQLGKLQSTYIEGLLK 297 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 + T++VHT ++ A T TGRL+S EPNLQNIPI+ + G+KIR+AF+ + LI +AD Sbjct: 298 VVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAAD 357 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAHIA+ L + F LDIH A +IF V+ ++V+P MRR AK +NF I+ Sbjct: 358 YSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIV 417 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 GIS + LA L I R EAA++I+RYF FPG+ Y+E +Q GYV T+ RR + Sbjct: 418 SGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYL 477 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I S ++R+ ER A+N PIQGSAADI ++AMI ++ L++ +L +LLQ+HDEL+ Sbjct: 478 PDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELI 537 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EE+ +++ ME+A + LRVPLKV+ + W Sbjct: 538 LEAPKEEMERLCRLVPEVMEQA----VTLRVPLKVDYHYGSTW 576 >gi|325957304|ref|YP_004292716.1| DNA polymerase I [Lactobacillus acidophilus 30SC] gi|325333869|gb|ADZ07777.1| DNA polymerase I [Lactobacillus acidophilus 30SC] Length = 887 Score = 364 bits (935), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 209/527 (39%), Positives = 323/527 (61%), Gaps = 17/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 +K E+E K ++K + HR GI G + D++L SY++++ +S+D+ IA Sbjct: 367 IKHILEDEKIKKNVFDLKRTMVAAHRLGIHTHGLDYDMLLASYLINNENNSNDLGEIAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K + IP D D ++ H N I +L L KL + Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKVNAIEKLKPELLKKLKEHEQDA 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ ++ P V+++ME+ G++++ L Q+ E + L LE+ IY +GEKFNL+SPK Sbjct: 484 LFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFTVKLKELEDKIYGQAGEKFNLNSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + L+Q+ +PI+ IL++RQ++KI+STY Sbjct: 544 QLGHILFEKLGLPVIKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 601 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + I + RVHT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P + Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 660 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S DYSQ+ELR+LAH++ + + F+ DIH A +IF ++ ++V+P MRRHAK +N Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVN 720 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R A ++I YF ++P I +Y++K R GY ETI R Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMHR 780 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ K ++R ER AIN+PIQGSAADI + AMI++ K L++ L TKM++Q+H Sbjct: 781 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVH 840 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883 Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 117/331 (35%), Positives = 179/331 (54%), Gaps = 21/331 (6%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L S K DGL NAI F NML LL K+ +H V Sbjct: 6 LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDIDPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y +YK R K PE LL Q+P ++ GI E++ +EADDII T Sbjct: 62 AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + EK GF TI++ D+DL QL S T + T + E EH+ + G+ P + Sbjct: 122 FVDKGEKNGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GDS DN PG+ +G KTA+ L+Q+YG++E I + +K+ K +EN++ + Sbjct: 182 IDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSVEGIYDHIDEMKKSKLKENLINDKDK 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298 A L++KL + D P+T+ ++ + + + +L F + + F K + + A+ D+ Sbjct: 242 AFLAKKLATIDRDSPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKFLADLNASGAGQDSTE 301 Query: 299 IEPV---------VLDINTTENKGIAIETEI 320 +E V V D+ TE + E+ Sbjct: 302 VEKVEYIVLNDDNVKDVKATEKDTVEFYLEM 332 >gi|148284572|ref|YP_001248662.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong] gi|146740011|emb|CAM80088.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong] Length = 910 Score = 364 bits (935), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 221/557 (39%), Positives = 320/557 (57%), Gaps = 40/557 (7%) Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG----ISM 483 FIDL+ TS++ S + + + KI +N+K + L + S Sbjct: 378 FIDLTAITSKEQNRAIATNPWWKSSIIELLLDSSIQKITYNLKELLIFLLNFLRTEITSA 437 Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543 +DIMLM Y+L +G++ + I Q + +K Q E+ + Sbjct: 438 SCIDDIMLMHYILSAGKNDLSLNEIIQTY------------------NKSYSEQYSENKV 479 Query: 544 ENSNVILQLWLL-----LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 WL L +L KLLH Y +D P+ ++ +E GI+I+ LLK++ Sbjct: 480 --------CWLKNTFDNLMSELFKNKLLHCYYEIDLPICYILRNIENNGIKINVPLLKEL 531 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKTTAQDL 657 SA++ + LE+ IY + G++FN++SPKQLG+ILF LK P + KT + T ++ L Sbjct: 532 SAQLKHKIELLEQQIYKICGQEFNIASPKQLGEILFDVLKLPHAKVSQKTKSYSTDSEVL 591 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 E ++ I +L+WRQL+K+ +TY D+LP IN T R+HT ST T RL+S Sbjct: 592 ENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRIHTTLLQTSTTTSRLSSHS 651 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+++ G K+R AF++P K++SADYSQIELRIL++ A I L VF DI Sbjct: 652 PNLQNIPIRSEYGLKVRSAFVAPQGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDI 711 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H AA+IF +N ++V+ + RR AK INF +IYGIS F +A QL I +EAA YI YF Sbjct: 712 HSSTAAQIFKINADQVTEEHRRKAKAINFGVIYGISAFGVAKQLNISNTEAAQYINHYFQ 771 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 +P I +Y+++TK F +NGYV+ + GRR + INS + RN +RAAINAPIQ +A+ Sbjct: 772 EYPSIRQYMDETKKFAVENGYVKNMIGRRCYIPLINSSNLTTRNFAQRAAINAPIQSTAS 831 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AMI K + A K+LLQ+HDELVFE+P E + TA +I +ME +P + Sbjct: 832 DIAKIAMIQYEKLIYSKYPAIKLLLQVHDELVFELPNELVDTACNLIKCTMEN--IPYFS 889 Query: 958 LRVPLKVNIKVSNNWQE 974 PLKV +K+ +NW E Sbjct: 890 F--PLKVELKIGDNWGE 904 Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 178/300 (59%), Gaps = 11/300 (3%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +FL+DG FI+RA++ L+ H+G P+ + GF M+ ++ E + Sbjct: 26 KNKKIFLLDGYPFIFRAYFVNQDLT-SHNGNPIGGVYGFATMIMNIISEFNPE----YMV 80 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V+FD FR++IYP+YK++RP++P L Q PLVR + I IE++G EADD+IA Sbjct: 81 VVFDTGLDNFRHKIYPEYKSHRPELPSELKIQFPLVREIVKYLNINTIEMEGVEADDVIA 140 Query: 123 TYTYIAEKEGFA---VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 + +A K G A + I+S+DKDL+QLV+ +YD +K++ I + I+K G+ P ++ Sbjct: 141 S---LANKFGNASDEIIIVSSDKDLLQLVNNKVYIYDPIKKQYIREKETIEKLGVRPSQV 197 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 +LTGD DNIPGIPGIG KTA LL+++ +L NIL N + I + R+ I E+ + Sbjct: 198 RDFLSLTGDVSDNIPGIPGIGPKTAIKLLEQFDSLNNILHNYANIASPRHRKLIEEHRQL 257 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS +LV L+ D+ + + +E+L N ++ + + FT LI + + + + +++ Sbjct: 258 AELSWQLVGLKQDLNLNLSVENLRWSPPNAEQIRTLIHKFGFTSLITKASKLFKLELSHL 317 >gi|227892837|ref|ZP_04010642.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] gi|227865339|gb|EEJ72760.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] Length = 886 Score = 364 bits (935), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 209/527 (39%), Positives = 323/527 (61%), Gaps = 18/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK E+E K ++K + LHR GI G + D++L SY++++ +S+D+ IA Sbjct: 367 LKHLLEDEKIKKNVFDLKRTTVGLHRLGIHAHGLDYDMLLASYLVNNENNSNDLGEIAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K + K + IP D I + H N I +L L KL + Sbjct: 427 YGDYSVKTDMEVYGKGKSEHIPDDDI----LFNHLASKVNAIEKLKEPLLKKLKEHEQDD 482 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ ++ P V+++ME+ G++++ L Q+ E + L LE+ IY+ +GE+FNL+SPK Sbjct: 483 LFDTIEIPTARVLAKMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYEQAGERFNLNSPK 542 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + L+Q+ +PI+ IL++RQ++KI+STY Sbjct: 543 QLGHILFEKLGLPVLKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 600 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + I + RVHT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P + Sbjct: 601 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 659 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S DYSQ+ELR+LAH++ + + F+ DIH A +IF ++ ++V+P MRRHAK +N Sbjct: 660 SCDYSQVELRVLAHVSGDAHMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVN 719 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R A ++I YF ++P I +Y+ K R GY ETI R Sbjct: 720 FGIVYGISDYGLSKNLGISRKRAKEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHR 779 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ K ++R ER AIN+PIQGSAADI + AMI++ K L++ L TKM++Q+H Sbjct: 780 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVH 839 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 840 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 882 Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 118/322 (36%), Positives = 176/322 (54%), Gaps = 21/322 (6%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L S K DGL NAI F NML LL K+ +H V Sbjct: 6 LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVEPTHILV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y +YK R K PE LL Q+P ++ GI E++ +EADDII T Sbjct: 62 AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKE-EKIDIEHVIKKWGIPPEKM 179 + E+ GF TI++ D+DL QL S T + T V E E EH+ + G+ P + Sbjct: 122 FATKGEENGFQTTIVTGDRDLTQLASDKTTVEVTKSGVSELEAYTPEHMKEVNGVTPTEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DN PG+ +G KTA+ L Q+YG++EN+ + +K+ K +EN++ + Sbjct: 182 IDMKALMGDNSDNYPGVTKVGPKTASRLTQKYGSVENLYEHVDEMKKSKLKENLINDKDK 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY----DCD 295 A L++KL + D P+TI ++ + + + +L F + L F K + + + D Sbjct: 242 AFLAKKLATIDRDSPVTIDIDDVKRQPVDYEKLRQFYEKLNFRKFLAELNASGKGQDDTA 301 Query: 296 AANIEPVVL------DINTTEN 311 +E VL D+ TEN Sbjct: 302 TEKVEYTVLDDHNFKDVKVTEN 323 >gi|327184034|gb|AEA32481.1| DNA polymerase I [Lactobacillus amylovorus GRL 1118] Length = 886 Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 209/527 (39%), Positives = 323/527 (61%), Gaps = 17/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 +K E+E K ++K + HR GI G + D++L SY++++ +S+D+ IA Sbjct: 366 IKHILEDEKIKKNVFDLKRTMVAAHRLGIHTHGLDYDMLLASYLINNENNSNDLGEIAHL 425 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K + IP D D ++ H N I +L L KL + Sbjct: 426 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKVNAIEKLKRELLKKLKEHEQDA 482 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ ++ P V+++ME+ G++++ L Q+ E + L LE+ IY +GEKFNL+SPK Sbjct: 483 LFDTIEIPTACVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQAGEKFNLNSPK 542 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + L+Q+ +PI+ IL++RQ++KI+STY Sbjct: 543 QLGHILFEKLGLPVIKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 600 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + I + RVHT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P + Sbjct: 601 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 659 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S DYSQ+ELR+LAH++ + + F+ DIH A +IF ++ ++V+P MRRHAK +N Sbjct: 660 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDQVTPLMRRHAKAVN 719 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R A ++I YF ++P I +Y++K R GY ETI R Sbjct: 720 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIKDYMDKAVQEARDKGYAETIMHR 779 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ K ++R ER AIN+PIQGSAADI + AMI++ K L++ L TKM++Q+H Sbjct: 780 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVH 839 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 840 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 882 Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 118/330 (35%), Positives = 180/330 (54%), Gaps = 20/330 (6%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L S K DGL NAI F NML LL K+ +H V Sbjct: 6 LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y +YK R K PE LL Q+P ++ GI E++ +EADDII T Sbjct: 62 AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + EK GF TI++ D+DL QL S T + T + E EH+ + G+ P + Sbjct: 122 FAAKGEKTGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GDS DN PG+ +G KTA+ L+Q+YG++E I + +K+ K +EN++ + Sbjct: 182 IDMKALMGDSSDNYPGVTKVGPKTASRLIQKYGSVEGIYDHIDEMKKSKLKENLINDKDK 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298 A L++KL + D P+T+ ++ + + + +L F + + F K + + A+ D+ Sbjct: 242 AFLAKKLATIDRDSPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKFLADLNASGAGQDSTE 301 Query: 299 IEPV--------VLDINTTENKGIAIETEI 320 +E V V D+ TE+ I E+ Sbjct: 302 VEKVEYIVLNDNVKDVKATEDDTIEFYLEM 331 >gi|295425309|ref|ZP_06818012.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664] gi|295065085|gb|EFG55990.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664] Length = 887 Score = 363 bits (933), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 211/527 (40%), Positives = 321/527 (60%), Gaps = 17/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 +K E+E K ++K + HR GI G + D++L SY++++ +S+D+ IA Sbjct: 367 IKHILEDEKIKKNVFDLKRSMVGAHRLGIHTHGLDYDMLLASYLVNNENNSNDLGEIAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K + IP D D ++ H N I L L KL + Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKINAIESLKKPLLEKLKDHEQDA 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ ++ P V+++ME+ G+++ L Q+ E + L LE+ IY +GEKFNL+SPK Sbjct: 484 LFDTIEIPTARVLARMEMNGMKVKASTLIQLQNEFAVQLKELEDKIYSQAGEKFNLNSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + L+Q+ +PI+ IL++RQ++KI+STY Sbjct: 544 QLGHILFEKLGLPVIKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 601 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + I + RVHT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P + Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 660 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTIN 805 S DYSQ+ELR+LAH++ + + F+ DIH A +IF ++ K V+P MRRHAK +N Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPKDVTPLMRRHAKAVN 720 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R A ++I YF ++P I +Y++K R+ GY ETI R Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAKEFIDNYFEQYPQIRDYMDKAVQEAREKGYAETIMHR 780 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ ++R+ ER AIN+PIQGSAADI + AMI++ K LE+ L TKM+LQ+H Sbjct: 781 RRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLEEMHLKTKMVLQVH 840 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 841 DELIFDVPKDELETVKKIVPEVMQSA----VRLDVPLIADSGWGHNW 883 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 180/331 (54%), Gaps = 21/331 (6%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L S K D L NAI F NML LL K+ +H V Sbjct: 6 LLLIDGNSVAFRAFYALYRQLESFKSPDSLHTNAIYAFKNMLDVLL----KDVDPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y +YK R K PE LL Q+P ++ GI E++ +EADDII T Sbjct: 62 AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + EK GF TI++ D+DL QL S T + T + E EH+ + G+ P + Sbjct: 122 FAAKGEKAGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+ + +K+ KR+E ++ + Sbjct: 182 IDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRDKDK 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298 A L++KL + D P+TI ++ + E + +L F + + F K + + A+ D A Sbjct: 242 AFLAKKLATIDRDSPVTIDIDDVKREPVDYEKLRQFYEKMNFRKFLAELNASGAGQDGAE 301 Query: 299 IEPV---------VLDINTTENKGIAIETEI 320 +E V V D+ TE + E+ Sbjct: 302 VEKVEYTVLNDDNVKDVKATEKDTVEFYLEM 332 >gi|257865986|ref|ZP_05645639.1| DNA polymerase I [Enterococcus casseliflavus EC30] gi|257872319|ref|ZP_05651972.1| DNA polymerase I [Enterococcus casseliflavus EC10] gi|257799920|gb|EEV28972.1| DNA polymerase I [Enterococcus casseliflavus EC30] gi|257806483|gb|EEV35305.1| DNA polymerase I [Enterococcus casseliflavus EC10] Length = 881 Score = 363 bits (933), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 212/524 (40%), Positives = 305/524 (58%), Gaps = 17/524 (3%) Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-- 512 + ++E K ++ K + L+RY + +G D++L +Y+LD+ +++DIA +A + Sbjct: 364 WLKDEERKKFVYDAKRTYVALNRYTTAPKGIAFDVLLAAYLLDTNDTNNDIAGVAAHYGY 423 Query: 513 --LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570 + K K +P D + H I L L +L + ++E Sbjct: 424 DAIQSDEAIYGKGAKKGLPAD---EEDFFAHLARKVAAITNLTPKLTEELAAKNQTALFE 480 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 ++ P+ +++ MEITGI++D L Q+ E ++ L +EE IY +GE FNL+SPKQLG Sbjct: 481 EMELPLSMILADMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYAEAGETFNLNSPKQLG 540 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF K+ P KTKTG + T LEQ+ PI+++IL +RQ++KI+STY + L Sbjct: 541 VILFEKMGLPVIKKTKTG-YSTAVDVLEQLKE-QAPIVEDILTYRQIAKIQSTYVEGLLK 598 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 I + +VHT Y T TGRL+S++PNLQNIPI+ + G+KIR AF+ +I S+D Sbjct: 599 VI-QGDGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREADWVIYSSD 657 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSI 808 YSQIELR+LAHI+ T L + F DIH A +FG+ E V+P MRR AK +NF I Sbjct: 658 YSQIELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGI 717 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS + L+ L I R A YI YF ++PG+ Y+E + GYVET++ RR + Sbjct: 718 VYGISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRY 777 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS +IR ER AIN PIQGSAADI + AMI + K L++ KLA MLLQ+HDEL Sbjct: 778 LPDINSRNFNIRTFAERTAINTPIQGSAADILKIAMIDLAKRLKEEKLAATMLLQVHDEL 837 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 VFEVPE E+ ++ ME+A + L VPL + W Sbjct: 838 VFEVPESELPRLDALVKEVMEQA----VALHVPLLTDSNWGKTW 877 Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 105/296 (35%), Positives = 158/296 (53%), Gaps = 12/296 (4%) Query: 4 ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +N L LVDG+S +RAF+A L R +GL NAI F M +N + +H Sbjct: 3 KNKLLLVDGNSVAFRAFFALHNSLERFKNANGLHTNAIYAFHTMF----ENVMAKEQPTH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR +Y DYK R K P Q+P +R A G+ E+ +EADDI Sbjct: 59 VLVAFDAGKTTFRTAMYEDYKGGRSKTPGEFKEQMPYIRELINALGVQYYELDNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175 I T +KE F V ++S D+DL QL + + TVK E HV +K+ G+ Sbjct: 119 IGTLANKVDKELFDVVVLSGDRDLTQLATEHVKVDITVKGVSEIESYTPAHVAEKYDGLT 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ ++ L GD+ DNIPG+ IG KTA LL+EYG++E I + +K+ K +EN++ Sbjct: 179 PLQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKEYGSVEGIYEHIDEMKKSKMKENLIN 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 E A LS++L + D PI + ++ L E + +L+ F + + F + ++ T Sbjct: 239 DREIAFLSKQLATIDVDAPIEVDVDKLKYEGKDLEKLVPFYQEMNFNSFLEKLQIT 294 >gi|238855720|ref|ZP_04646016.1| DNA polymerase I [Lactobacillus jensenii 269-3] gi|282934757|ref|ZP_06339997.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|238831666|gb|EEQ24007.1| DNA polymerase I [Lactobacillus jensenii 269-3] gi|281301168|gb|EFA93472.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] Length = 885 Score = 363 bits (933), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 212/552 (38%), Positives = 342/552 (61%), Gaps = 28/552 (5%) Query: 432 SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIM 490 +V+ S D + LTK+ L L E++ K ++K + LHR GI D++ Sbjct: 351 NVYVSNDVS---LLTKQPLQTL---LEDQAVNKNVFDLKRTIVGLHRLGIKANNINYDML 404 Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENS 546 L SY++++ +S+D+ I Q + Y + + K +K++IP ++I + + + Sbjct: 405 LASYLVNNENNSNDLGEICQLYNYYDLQPDVDIYGKGKKAAIPDEEIFFNHLAGKVL--- 461 Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 I L L +L + +YE ++ P+ +V+++MEITG++ D L Q+ + + L Sbjct: 462 -AIEALKPTLLKRLTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFGQRL 520 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666 LE +IY +GE+FN++SPKQLG ILF KL+ P KTKTG + T+ + LEQ+ +P Sbjct: 521 TELEADIYLEAGERFNINSPKQLGQILFEKLELPPIKKTKTG-YSTSVEVLEQLK-DQSP 578 Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 I++ +L++RQ++KI+STY L + I + RVHT Y T TGRL+S++PNLQNIP++ Sbjct: 579 IVQKVLDYRQIAKIQSTYVKGLLDVI-QPDGRVHTRYQQTLTATGRLSSVDPNLQNIPVR 637 Query: 727 TDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 + G+KIR+AFI P+ K + S DYSQ+ELR+LAH++ + + F+ DIH A Sbjct: 638 LEEGKKIRKAFI--PSNKDGYIFSCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTAM 695 Query: 784 EIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +IF ++ ++V+ MRRHAK +NF I+YGIS + L+ L I R +A ++I YF ++P I Sbjct: 696 KIFHLDSPDEVTTNMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKEFIDNYFEQYPKI 755 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y++K NF R+ GYVETI RR + +I++ ++R+ ER AIN+PIQG AADI + Sbjct: 756 KDYMDKEINFAREKGYVETIMHRRRYLPDIHAKNFNVRSFAERTAINSPIQGGAADIIKI 815 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI++ K L++ L +KML+Q+HDEL+F+VP +E+ T +++ M+ A ++L VPL Sbjct: 816 AMINMQKKLDELNLKSKMLIQVHDELIFDVPADELETIKKVVPEVMQNA----VHLDVPL 871 Query: 963 KVNIKVSNNWQE 974 + ++W E Sbjct: 872 VADSNWGHDWYE 883 Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 110/289 (38%), Positives = 165/289 (57%), Gaps = 17/289 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L R+ D GL NAI F NML +L K+ SH Sbjct: 6 LLLIDGNSVAFRAFYA---LYRQLDRFQNPEGLHTNAIYAFKNMLDVIL----KQENPSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD VTFR ++Y DYK R K P LL Q+P ++ + GI + E+ +EADDI Sbjct: 59 VLVAFDAGKVTFRTKLYSDYKGGRQKTPGELLEQIPYIKEMLKDLGIKSYELVNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKE-EKIDIEHVIKKWGIPP 176 I TY+ + E+ G+ V I+S DKDL QL S +T +Y T V E E EH+ + G+ P Sbjct: 119 IGTYSKMGEEAGYQVAIVSGDKDLTQLASDSTTVYVTKSGVSELEAFTPEHMKEVNGVTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + ++AL GD+ DN PG+ +G KTA+ L+Q+YG++ENI + +K+ K +EN++ Sbjct: 179 TEFIDMKALMGDNSDNYPGVTKVGPKTASNLIQKYGSVENIYKHIDEMKKSKLKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 + A L++ L + P+ L+ L ++ N L F + + F + + Sbjct: 239 KDKAFLAKTLATIDRTSPVEFKLDELKKQETNVVDLRKFYEQMNFRRFL 287 >gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579] gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579] Length = 891 Score = 363 bits (933), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 197/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P K+ Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFCTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI Q++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E E Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEKLEENKEQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I ++L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|301300333|ref|ZP_07206538.1| DNA-directed DNA polymerase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852069|gb|EFK79748.1| DNA-directed DNA polymerase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 416 Score = 363 bits (933), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 186/409 (45%), Positives = 276/409 (67%), Gaps = 8/409 (1%) Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 L +Y ++++P+ V++ MEI G+++D + L+ + +E+ + L LE+ IY+ +GE+FNL+S Sbjct: 10 LDLYTKIERPLSIVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAGEEFNLNS 69 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQLG ILF KLK P KTKTG + T LEQ+ G +PI+ NIL++RQL+KI+STY Sbjct: 70 PKQLGVILFEKLKLPVIKKTKTG-YSTAVGVLEQLR-GMSPIVDNILQYRQLAKIQSTYI 127 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 + L ++K+ + HT Y+ T TGRL+S++PNLQNIP++ + G+KIR+AF+ S P + Sbjct: 128 EGLLKVVSKKDGKAHTRYTQTLTSTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHPGWE 187 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKT 803 + S+DYSQIELR+LAHI+K + + F+ +DIH A IF V+ ++V+P MRR AK Sbjct: 188 IFSSDYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKA 247 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ + I R +A +I Y F G+ +Y+EK F ++NGYVETIF Sbjct: 248 VNFGIVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIF 307 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I S ++R+ ER A+N+PIQGSAADI + AMI++ + L++ L KMLLQ Sbjct: 308 NRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMINMQEMLKEKNLQAKMLLQ 367 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE P +EI ++ M+ A + L VPLKV K W Sbjct: 368 VHDELIFEAPTKEIPLLEDMVPKVMDSA----VKLDVPLKVESKHGQTW 412 >gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 891 Score = 363 bits (933), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 197/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P ++ Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEV- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D D Sbjct: 458 ---VAEHVARKVHVLYDIKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDR 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI Q++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIQKLEQLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E E Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I ++L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 871 Score = 363 bits (932), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 203/525 (38%), Positives = 321/525 (61%), Gaps = 26/525 (4%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI 508 L+ L+ F E+E K+ H+ K L++Y I ++GF+ D + +Y++DS ++++++ + Sbjct: 367 LNLLRTFMEDETVKKVIHDSKNLITFLNKYDIDIQGFDFDTAIAAYLIDSSKANYEVFDL 426 Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 ++L K+I + S + I S ++ +L+ L+ L E + + Sbjct: 427 INRFL---EKDI---KSDSNDLKAICSSYLK-----------KLYEKLKEMLHKEDMDEL 469 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 Y +++ P+I V+S ME G +I+QD L+++ + + + E+ IY+L+ E+FN+SSPKQ Sbjct: 470 YYKVEHPLIYVLSSMESIGFKINQDKLEELRVKFKEQIEKTEKEIYELADEEFNVSSPKQ 529 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LG ILF KL P KTKTG + T + LE++ +PII ++ +RQ++KI STY + L Sbjct: 530 LGKILFEKLDLPVIKKTKTG-YSTNQEVLEKL-IDKHPIITKVMYYRQITKINSTYVEGL 587 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LIS 747 N I+ +H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI + LIS Sbjct: 588 KNVID-IDGCIHSNFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDSDDILIS 646 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 DYSQIELR+LAH+A + FE+ DIH A+E+F V +++V+ MR +AK +NF Sbjct: 647 CDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFG 706 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 I+YGIS F LA L+I + EAA+Y+ YF R+P I EY+ + ++ GYV TI RR Sbjct: 707 IVYGISDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNRRR 766 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 EI S ++ + ER A+NAPIQGSAADI + AM++V+ L + L ++++LQ+HDE Sbjct: 767 FIPEIKSSNKIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLREKNLNSELILQVHDE 826 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 L+ V ++E Q+++ MEKA I L V L V++K W Sbjct: 827 LILNVKKDEFDIVKQLVIEEMEKA----IKLNVALDVDLKYGYTW 867 Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 103/257 (40%), Positives = 148/257 (57%), Gaps = 9/257 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D +S + RAFYA P L+ DG+ NAI GF NML+K+ + E + FD Sbjct: 4 LLILDSNSLMNRAFYALPPLTN-DDGVNTNAIYGFTNMLFKM----KDEINPDNIIATFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFR++ Y +YKA R K+P L Q P+++ + GI EI GFEADDII T + Sbjct: 59 KKSPTFRHKEYSEYKAGRKKMPPELGEQFPIIKELLKYMGIKTFEIDGFEADDIIGTISK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCL 182 E+ V I++ DKD +QL S T + T V E I D + + ++ I P + + + Sbjct: 119 FGEENDMEVYIVTGDKDALQLASEKTKVVITKKGVTETAIYDYKAFMDEFEITPTQFIDV 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+PG+G KTA L++EYG+LE +L N I KK +EN+ E A Sbjct: 179 KGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSLEEVLKNIPEISGKKLKENLENNMEQAIF 238 Query: 243 SRKLVMLRTDVPITIPL 259 S+KL + +VP+ I L Sbjct: 239 SKKLATIMREVPLDINL 255 >gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171] gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171] Length = 877 Score = 363 bits (932), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 197/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P K+ Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 443 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 500 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 560 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 737 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI Q++ ME A Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 856 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 857 ----IELAVPLKVDYSYGPTW 873 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E E Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEKLEENKEQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I ++L FT L+N++ T + A A Sbjct: 237 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDITFDI 304 >gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1] gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1] Length = 897 Score = 363 bits (932), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 197/511 (38%), Positives = 296/511 (57%), Gaps = 9/511 (1%) Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKS 523 H +K L R G++ G ED LMS +L R H + +A++ S R + Sbjct: 391 HELKAAAHALARLGLARSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRNPADGA 450 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 ++ + ++ + +V A + + L L L E+L +Y +++P++ V+ +M Sbjct: 451 KRGAPGLEGLEVERVAAWAGACAASLPDLAAKLAEGLEAERLSPLYREVERPLVPVLVEM 510 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E TGI +D+ ++ +SAE +++ LE I+ +G FN++S ++L +LF +L+ P Sbjct: 511 ERTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHPFNVASTRELAQVLFVELELPVVK 570 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 + KTG +T QD+ + + + + +LE R LSK+K TY D+LP ++ R+HT + Sbjct: 571 RLKTG--PSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTF 628 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 A TGRL+S +PNLQNIP++T+L ++IR+AF++P +L+SADYSQIELRILAH + Sbjct: 629 HQAGAATGRLSSSDPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSD 688 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L Q F + D+H AAE FGV E+V+P RR AK +NF I YG+S F L+ +L + Sbjct: 689 DPGLLQAFRDREDVHTRTAAETFGVPPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQRLDL 748 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 P SEA I RYF R+ G+ YIE R G T+FGR EI + ++RN Sbjct: 749 PPSEAQGIIDRYFTRYAGVRRYIEWAVEEARAKGESRTLFGRARTMPEIGARNPALRNAA 808 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER AIN PIQG+AADI + AMI VH +L + A ++LLQ+HDELV EVPE E+ + Sbjct: 809 ERTAINTPIQGTAADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELAPVEAL 868 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME A L+VPL+V + W E Sbjct: 869 VRREMEGAA----RLKVPLEVQVGHGQTWAE 895 Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 116/291 (39%), Positives = 163/291 (56%), Gaps = 16/291 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGS FI+RA++A P LS G+P NA+ GF NML K L +E +H A++FD Sbjct: 4 LTLIDGSGFIFRAYHAIPHLS-TTKGIPTNAVYGFTNMLLKAL----REHAPTHVALVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +FR++I P+YKANRP+ P+ L Q PLVR +A +P IE GFEADDIIAT Sbjct: 59 AGRRSFRHDIDPEYKANRPEAPDDLASQFPLVRDVARALNVPVIEEPGFEADDIIATLAG 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVC 181 A G+ V +++ DKD QLV LYD + E V KK G+ PE++V Sbjct: 119 RARAAGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGGWTGPAEVEKKMGVRPEQVVE 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILE 235 Q++ GD IDN+PGI G+G TAA L++ +G E +L I +K R+ ++ Sbjct: 179 YQSILGDKIDNVPGIAGVGEVTAAALIRHFGTTEAMLARPGEIPAAVSRGGEKLRDKVVA 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 AE R +R+LV LR D+ + E + R + LEF++L+ Sbjct: 239 NAERIRTNRRLVALRRDLDLPFAPEAFGRRPPDQERARALFSELEFSRLVK 289 >gi|257875613|ref|ZP_05655266.1| DNA polymerase I [Enterococcus casseliflavus EC20] gi|257809779|gb|EEV38599.1| DNA polymerase I [Enterococcus casseliflavus EC20] Length = 881 Score = 363 bits (932), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 212/524 (40%), Positives = 305/524 (58%), Gaps = 17/524 (3%) Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-- 512 + ++E K ++ K + L+RY + +G D++L +Y+LD+ +++DIA +A + Sbjct: 364 WLKDEERKKFVYDAKRTYVALNRYTTAPKGIAFDVLLAAYLLDTNDTNNDIAGVAAHYGY 423 Query: 513 --LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570 + K K +P D + H I L L +L + ++E Sbjct: 424 DAIQSDEAIYGKGAKKGLPAD---EEDFFAHLARKVAAITNLTPKLTEELAAKNQTALFE 480 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 ++ P+ +++ MEITGI++D L Q+ E ++ L +EE IY +GE FNL+SPKQLG Sbjct: 481 EMELPLSMILADMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYAEAGETFNLNSPKQLG 540 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF K+ P KTKTG + T LEQ+ PI+++IL +RQ++KI+STY + L Sbjct: 541 VILFEKMGLPVIKKTKTG-YSTAVDVLEQLKE-QAPIVEDILTYRQIAKIQSTYVEGLLK 598 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SAD 749 I + +VHT Y T TGRL+S++PNLQNIPI+ + G+KIR AF+ +I S+D Sbjct: 599 VI-QGDGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREADWVIYSSD 657 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSI 808 YSQIELR+LAHI+ T L + F DIH A +FG+ E V+P MRR AK +NF I Sbjct: 658 YSQIELRVLAHISDDTHLKEAFIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGI 717 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS + L+ L I R A YI YF ++PG+ Y+E + GYVET++ RR + Sbjct: 718 VYGISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRY 777 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS +IR ER AIN PIQGSAADI + AMI + K L++ KLA MLLQ+HDEL Sbjct: 778 LPDINSRNFNIRTFAERTAINTPIQGSAADILKIAMIDLVKRLKEEKLAATMLLQVHDEL 837 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 VFEVPE E+ ++ ME+A + L VPL + W Sbjct: 838 VFEVPESELPRLDALVKEVMEQA----VALHVPLLTDSNWGKTW 877 Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 105/296 (35%), Positives = 158/296 (53%), Gaps = 12/296 (4%) Query: 4 ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +N L LVDG+S +RAF+A L R +GL NAI F M +N + +H Sbjct: 3 KNKLLLVDGNSVAFRAFFALHNSLERFKNANGLHTNAIYAFHTMF----ENVMAKEQPTH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR +Y DYK R K P Q+P +R A G+ E+ +EADDI Sbjct: 59 VLVAFDAGKTTFRTAMYEDYKGGRSKTPGEFKEQMPYIRELINALGVQYYELDNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175 I T +KE F V ++S D+DL QL + + TVK E HV +K+ G+ Sbjct: 119 IGTLANKVDKELFDVVVLSGDRDLTQLATEHVKVDITVKGVSEIESYTPAHVAEKYDGLT 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ ++ L GD+ DNIPG+ IG KTA LL+EYG++E I + +K+ K +EN++ Sbjct: 179 PLQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKEYGSVEGIYEHIDEMKKSKMKENLIN 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 E A LS++L + D PI + ++ L E + +L+ F + + F + ++ T Sbjct: 239 DREIAFLSKQLATIDVDAPIEVDVDKLKYEGKDLEKLVPFYQEMNFNSFLEKLQIT 294 >gi|184155793|ref|YP_001844133.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956] gi|183227137|dbj|BAG27653.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956] Length = 886 Score = 363 bits (931), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 213/527 (40%), Positives = 319/527 (60%), Gaps = 16/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LKK E+ + N K + LHR G+ + G + D++L SY+L++ +++D+ +A Sbjct: 364 LKKLLEDPAVERDVFNAKAQLVGLHRLGVDLAGVDFDLLLASYLLNTSENANDLGVLAAA 423 Query: 512 WLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + T +E+ K K +IP D D H + + I L L +L + L Sbjct: 424 HDYHQVQTDEEVYGKGAKRAIPAD---DEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLP 480 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +YE +++P+ V++ MEITGI +D LK++ +++ + LE+ IY +GE+FN++SPK Sbjct: 481 LYEDIERPLSAVLAHMEITGIHVDAATLKEMGSKLVEREAELEQAIYQEAGEEFNINSPK 540 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF K+K P KTKTG +TA D+ + PI+++IL +RQ+SK++STY Sbjct: 541 QLGVILFEKMKLPVIKKTKTGY--STAVDVLEKLADRAPIVQDILAYRQISKLQSTYITG 598 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L I++ Q++HT Y T TGRL+S++PNLQNIP++ + G++IRRAF S P K+ Sbjct: 599 LLKVIHQDDQKIHTRYLQTLTATGRLSSVDPNLQNIPVRLEEGRQIRRAFTPSAPGWKIF 658 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTIN 805 S+DYSQ+ELR+LAH+ + F DIH A IF + E +V+P MRR AK +N Sbjct: 659 SSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQAKAVN 718 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + LA + + R +A ++I+ YF FPG+ +Y+ +Q GYVET+ R Sbjct: 719 FGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVETLTHR 778 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + EI++ + R+ ER A+N PIQGSAADI + AMI + K+L++ L +MLLQIH Sbjct: 779 RRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAMIRMEKALKERGLRARMLLQIH 838 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DELVFE PEEEI +++ M+ A + L VPLKV K W Sbjct: 839 DELVFEAPEEEIAILEELVPSIMDSA----VKLDVPLKVESKSGATW 881 Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 109/310 (35%), Positives = 165/310 (53%), Gaps = 14/310 (4%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L L+DG+S ++RAF+A K GL AI GF ML +L+ + ++ Sbjct: 4 QLLLIDGNSIVFRAFFAMHNQMEKFTNQAGLHTAAIYGFKLMLDHILKEVQPDAAL---- 59 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR E Y DYK +R K P L+ QLP VR +A G+ A E+ +EADDII Sbjct: 60 VAFDAGKTTFRTEKYADYKGSRDKTPGELVEQLPYVRKLVEASGLHAYELVNYEADDIIG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEK 178 T ++ GF I++ D+DL QL + T + T + E+ ++ +K G+ P + Sbjct: 120 TLAKEGDQAGFETMIVTGDRDLTQLATDHTTVAVTKRGVTQTEEFTPAYMQEKLGVTPRQ 179 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + ++AL GDS DN PG+ IG KTA L+QEYG+L+ + N + +K+ KR+EN++ + Sbjct: 180 YIDVKALMGDSSDNYPGVTKIGEKTAVSLIQEYGSLDGLYENIAAMKKSKRKENLINEEK 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT---TYDCD 295 AR + L +R D P+ I L+ + + + LI + L+F + + D Sbjct: 240 IARECQDLATIRRDAPLAIGLKDIAYQGPDEAALIDLYQELDFKSFLKELGAQEGGAQVD 299 Query: 296 AANIEPVVLD 305 A IE VLD Sbjct: 300 QAPIEYQVLD 309 >gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] Length = 899 Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 202/538 (37%), Positives = 308/538 (57%), Gaps = 19/538 (3%) Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHD 504 +E L+ E K H+ K + L + G+++ G D L S +L R H Sbjct: 370 AEEAAGALRPLLSGE-LPKHAHDRKGVQHALAQLGLALGGPGADTDLASRLLLPTRREHA 428 Query: 505 IASIAQKWLSYTRKEILK-------SRKSS-IPIDKISDSQVQEHAIENSNVILQLWLLL 556 +A +A++ + E+ + +RKS +P++ + +V E A + + +L L L Sbjct: 429 LADVARERIGC---ELPRDPSGGDAARKSERVPVEGLEVERVGEWAAQCAASLLDLAPAL 485 Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 L E LL +Y +++P++ V+ +ME GI +D+ ++ +SAE + + LE I+ Sbjct: 486 ERALESEGLLPLYRDVERPLVPVLCEMERAGILVDRAAMEGMSAEFGRTMQDLEARIHAA 545 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +G FN++S ++L +LFT+L P + KTG +T QD+ + + + + +LE R Sbjct: 546 AGHPFNIASTRELAQVLFTELALPVLKRLKTG--PSTDQDVLEKLAEQHELPRLVLEHRA 603 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 L+K+K TY D+LP ++ R R+HT + A TGRL+S +PNLQNIP++T+L ++IR A Sbjct: 604 LAKLKGTYVDALPQLVDPRDGRIHTTFHQAGAATGRLSSSDPNLQNIPVRTELSRRIRAA 663 Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 F++PP +L+SADYSQIELRILAH + L + F D+H AAE FGV +V+ Sbjct: 664 FVAPPGWRLLSADYSQIELRILAHYSDDPALLEAFRLREDVHTRTAAETFGVATGEVTSD 723 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 MRR AK +NF I YG+S F L+ +L +P +EA I RYF R+ G+ Y+EK R Sbjct: 724 MRRIAKVLNFGIAYGLSAFGLSQRLDLPGAEAQGIIDRYFARYAGVRRYVEKAVEDARAT 783 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 G T+FGR EI + ++RN ER AIN PIQG+AADI + AMI VH +L Sbjct: 784 GESRTLFGRARAMPEIAARNPALRNAAERTAINTPIQGTAADIVKVAMIRVHDALAGDAR 843 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++LLQ+HDELV EVPE+E+ ++ M A L+VPL V + V ++W E Sbjct: 844 RARLLLQVHDELVLEVPEDELAPVEALVRREMGGAA----QLKVPLDVEVGVGHSWAE 897 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 112/291 (38%), Positives = 159/291 (54%), Gaps = 16/291 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGS F++RA++A P LS G P NA+ GF ML K L +E +H ++ D Sbjct: 4 LTLIDGSGFVFRAYHAIPHLSTTR-GTPTNAVYGFTTMLLKAL----REHAPTHVVLVMD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +FRNEI P YKANRP+ P+ L Q PLVR A +P IE G EADD+IAT Sbjct: 59 AGRKSFRNEIDPAYKANRPEAPDDLQVQFPLVREVADALAVPRIEEPGVEADDVIATLAS 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVC 181 A ++G+ V +++ DKD QLV LYD + E V KK G+ P++++ Sbjct: 119 RAREQGWEVVVVTGDKDFGQLVDERLSLYDPMAEASGRGGWTGPGEVEKKLGVRPDQVIE 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILE 235 A+ GD IDN+PGIPGIG TAA L++ +G +E +L IK +K +E I+ Sbjct: 179 YMAILGDKIDNVPGIPGIGEVTAAALVRHFGTVEEMLRRPEEIKAALSRGGEKVKEKIVA 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 E R +R+LV LR D+ + + R+ + LEF++L+ Sbjct: 239 SEERIRKNRQLVSLRRDLVLPFAPGQFERRRPDEARVRALFSELEFSRLLK 289 >gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1] gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1] Length = 872 Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 220/537 (40%), Positives = 330/537 (61%), Gaps = 36/537 (6%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ 510 LK+ FE E F H IK D LV Y GI + + D +M+Y+L+ S++D+ + + Sbjct: 351 LKEIFEKEKFEFTTHEIK-DFLVKLSYKGIECKSKYMDTAIMAYLLNPSESNYDLDRVLK 409 Query: 511 KWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 K+L + +E+ + +++I + + ++ + L EKL++ Sbjct: 410 KYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLR---------EKLMN 460 Query: 568 VYERLDK---------PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 E +D P+++V+ ME++G +D+++LK++S +I+ + + + IY +G Sbjct: 461 FIEEMDMKRLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAG 520 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 +FN++SPKQL + LF KL P KTKTG + T ++ LEQ+ N I+ +I+E+RQL+ Sbjct: 521 YQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVLEQL-VPYNNIVNDIIEYRQLT 578 Query: 679 KIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 K+KSTY D LP + RVH+ + T TGR++S EPNLQNIPI+ + G++IRRAF Sbjct: 579 KLKSTYIDGFLP--LMDENNRVHSNFKQMVTSTGRISSTEPNLQNIPIREEFGRQIRRAF 636 Query: 738 ISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 I P TK ++SADYSQIELR+LAH++ L + F N+ DIH A+E+F V +EKV+P Sbjct: 637 I-PRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTP 695 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 +MRR AK +NF IIYGIS + L+ L+I R EA +YI YF R+ G+ EYIEK F ++ Sbjct: 696 EMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKE 755 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 NGYV TI RR + EINS + R+ ER A+NAPIQGSAADI + AM+ V+ LE K Sbjct: 756 NGYVITIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVRVYNDLEKLK 815 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 L +K++LQ+HDELV + ++E+ +I+ +ME + L+VPL V I V NW Sbjct: 816 LKSKLILQVHDELVVDTYKDEVEIVKKILKDNMENV----VQLKVPLVVEIGVGPNW 868 Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 115/296 (38%), Positives = 180/296 (60%), Gaps = 10/296 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DGSS +YRA+YA P+L+ +GL NA+ GF ML KL++ + + I A+ FD Sbjct: 4 FLVIDGSSLMYRAYYALPMLTT-SEGLHTNALYGFTMMLIKLIEEEKPDYI----AIAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y DYKA R +PE L Q+ L++ + F I +E++G+EADDII T + Sbjct: 59 KKAPTFRHKEYQDYKATRQAMPEELAEQVDLLKEIIEGFNIKILELEGYEADDIIGTISK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 +AE++ V +++ D+D +QLVS + + K E+ D + V++++ I P + + L Sbjct: 119 LAEEKEMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEEFDEKAVLERYEITPHQFIDL 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPGIP IG KTA LL+++G +EN+L N S++K K +ENI E A + Sbjct: 179 KGLMGDKSDNIPGIPNIGEKTAIKLLKDFGTIENLLQNLSQLKG-KIKENIENNKELAIM 237 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 S+KLV ++ D+PI I E +++ N +L+ LEF LI+ + D + N Sbjct: 238 SKKLVTIKRDIPIEIDFEEYRVKEFNEEKLLEIFNKLEFFSLIDSIKKKNDVEIVN 293 >gi|227872290|ref|ZP_03990648.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227841862|gb|EEJ52134.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 868 Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 180/407 (44%), Positives = 271/407 (66%), Gaps = 7/407 (1%) Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +Y +++P++ V+ +ME GI +D++ L E+ KN+ L+E IY ++GE+FN++SP+ Sbjct: 467 LYRDVEEPLVPVLYRMEKAGILVDKEALLSYGEELKKNIAMLQEEIYAMAGEEFNINSPQ 526 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF K++ P G KTKTG +TA D+ + D PI+ ILE+R SK+ STYA+ Sbjct: 527 QLGGILFEKMQLPGGKKTKTGY--STAVDVLEKLQEDYPIVGKILEYRTYSKLNSTYAEG 584 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747 L N++ + QR+H + T TGRL+S EPNLQNIPI+T++G+ R FI + Sbjct: 585 LSNYVGE-DQRIHGSFQQMVTATGRLSSTEPNLQNIPIRTEMGRVFRSVFIPKEGSVFLD 643 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQ+ELR+LA ++K L + + DIHR+ A+E+F V +E+V+P++RR+AK +NF Sbjct: 644 ADYSQVELRLLASLSKDEKLIEAYRKDADIHRVTASEVFHVPLEEVTPELRRNAKAVNFG 703 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 I+YGIS F L+ L I R EA +YI+RYF +P + EY++ F R++ +V+T+FGRR Sbjct: 704 IVYGISAFGLSEGLSISRQEAKEYIERYFTSYPKVKEYLDGEVAFAREHSFVKTLFGRRR 763 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 EI++ R+ +ER A+NAPIQG+AADI ++AM+ V + L + ++++LQIHDE Sbjct: 764 PLPEIHASNFMRRSFSERVAMNAPIQGTAADIIKKAMVIVDQKLSEKNCQSRIVLQIHDE 823 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+ EV +EE+ T I+V +ME ++L VPL V V NNW E Sbjct: 824 LLLEVVKEELETVKDILVSAMEHV----VSLPVPLIVEATVGNNWDE 866 Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 103/297 (34%), Positives = 164/297 (55%), Gaps = 18/297 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K + L+DG S + RAFY P L+ K +G+P N I GF N+L+K ++ E +A Sbjct: 2 KREKILLIDGHSILSRAFYGVPFLNNK-EGIPTNGIYGFLNILFKEIEIEETEYVA---- 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD P TFR++++P+YK R +PE L Q+PL++ + +P + ++GFEADDI+ Sbjct: 57 VAFDVPKPTFRHKLFPEYKGTRKGMPEELKEQVPLLQELLRKMHMPLLMMEGFEADDILG 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIP 175 T + EG V ++S D+DL+QL P T +T K + V ++WG+ Sbjct: 117 TVAKQMQAEGKEVVVVSGDRDLLQLSDEHIKISIPKTSKGET-KVYSYYPKDVEEEWGVS 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR----- 230 P + + L+AL GDS DNIPG+PG+G KTA ++Q+Y ++E +A + K R Sbjct: 176 PIEFIDLKALMGDSSDNIPGVPGMGEKTATWIIQKYKSIEEAYAHAEDSEFKVPRKPNAG 235 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 +++ E E A+LS++L + VPI++ E+ ++ EF L +R Sbjct: 236 KDLKENFELAKLSKELATINIHVPISLNFSDCKWENYANSESKELIRKWEFRSLYSR 292 >gi|227877046|ref|ZP_03995135.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256850116|ref|ZP_05555546.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|262047415|ref|ZP_06020372.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] gi|227863364|gb|EEJ70794.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256713088|gb|EEU28079.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|260572389|gb|EEX28952.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] Length = 887 Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 209/527 (39%), Positives = 323/527 (61%), Gaps = 17/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 +K E+E K ++K + HR I G + D++L SY++++ +S+D+ IA Sbjct: 367 IKHILEDEKIKKNVFDLKRTMVAAHRLDIHTHGLDYDMLLASYLINNENNSNDLGEIAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K + IP D D ++ H N I L L KL + Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKINAIESLKKPLLEKLKDHEQDD 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++E ++ P V+++ME+ G++++ L Q+ E + L LE+ IY +GEKFNL+SPK Sbjct: 484 LFETIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAGEKFNLNSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + L+Q+ +PI+ IL++RQ++KI+STY Sbjct: 544 QLGHILFEKLGLPPIKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 601 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + I + RVHT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P + Sbjct: 602 LLDVI-QSDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 660 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S DYSQ+ELR+LAH++ + + F+ DIH A +IF ++ ++V+P MRRHAK +N Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVN 720 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R A ++I YF ++P I EY++K R+ GY ETI R Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHR 780 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ K ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TK+++Q+H Sbjct: 781 RRYLPDIHAKKFTVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKIVVQVH 840 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883 Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/331 (36%), Positives = 184/331 (55%), Gaps = 21/331 (6%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L S K DGL NAI F NML LL K+ +H V Sbjct: 6 LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHILV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y +YK R K PE LL Q+P ++ GI E++ +EADDII T Sbjct: 62 AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + EK GF T+++ D+DL QL SP+T + T + E EH+ + G+ P + Sbjct: 122 FVDKGEKNGFTTTVVTGDRDLTQLASPSTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+ + +K+ KR+E ++ + Sbjct: 182 IDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIREKDK 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298 A L++KL + D P+T+ ++ + + + +L F + + F K + + A+ D+ Sbjct: 242 AFLAKKLATIDRDSPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKFLADLNASGAGQDSTE 301 Query: 299 IEPV---------VLDINTTENKGIAIETEI 320 +E V V D+ TE+ I E+ Sbjct: 302 VEKVEYIVLNDDNVKDVKATEDDTIEFYLEM 332 >gi|256843650|ref|ZP_05549138.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|293381755|ref|ZP_06627732.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1] gi|256615070|gb|EEU20271.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|290921675|gb|EFD98700.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1] Length = 887 Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 209/527 (39%), Positives = 323/527 (61%), Gaps = 17/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 +K E+E K ++K + HR I G + D++L SY++++ +S+D+ IA Sbjct: 367 IKHILEDEKIKKNVFDLKRTMVAAHRLDIHTHGLDYDMLLASYLINNENNSNDLGEIAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K + IP D D ++ H N I L L KL + Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKINAIESLKKPLLEKLKDHEQDD 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++E ++ P V+++ME+ G++++ L Q+ E + L LE+ IY +GEKFNL+SPK Sbjct: 484 LFETIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAGEKFNLNSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + L+Q+ +PI+ IL++RQ++KI+STY Sbjct: 544 QLGHILFEKLGLPPIKKTKTG-YSTSVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 601 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + I + RVHT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P + Sbjct: 602 LLDVI-QSDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 660 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S DYSQ+ELR+LAH++ + + F+ DIH A +IF ++ ++V+P MRRHAK +N Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVN 720 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R A ++I YF ++P I EY++K R+ GY ETI R Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHR 780 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ K ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TK+++Q+H Sbjct: 781 RRYLPDIHAKKFTVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKIVVQVH 840 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883 Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 120/331 (36%), Positives = 184/331 (55%), Gaps = 21/331 (6%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L S K DGL NAI F NML LL K+ +H V Sbjct: 6 LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHILV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y +YK R K PE LL Q+P ++ GI E++ +EADDII T Sbjct: 62 AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + EK GF T+++ D+DL QL SP+T + T + E EH+ + G+ P + Sbjct: 122 FVDKGEKNGFTTTVVTGDRDLTQLASPSTTVEVTKSGVSQLEAYTPEHMKEVNGVTPTEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+ + +K+ KR+E ++ + Sbjct: 182 IDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRDKDK 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298 A L++KL + D P+T+ ++ + + + +L F + + F K + + A+ D+ Sbjct: 242 AFLAKKLATIDRDSPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKFLADLNASGAGQDSTE 301 Query: 299 IEPV---------VLDINTTENKGIAIETEI 320 +E V V D+ TE+ I E+ Sbjct: 302 VEKVEYIVLNDDNVKDVKATEDDTIEFYLEM 332 >gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15] gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15] Length = 891 Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 197/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P K+ Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI Q++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E E Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I ++L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|28378222|ref|NP_785114.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1] gi|254556429|ref|YP_003062846.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1] gi|28271057|emb|CAD63962.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1] gi|254045356|gb|ACT62149.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1] Length = 882 Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 206/512 (40%), Positives = 312/512 (60%), Gaps = 16/512 (3%) Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--K 522 ++K + L+R GI + + D++L+SY+LD+ +S+D+ S+A++ + E + K Sbjct: 376 DMKRTTVGLNRLGIQLGKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGK 435 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K +IP D D H I L L +L + +Y+ ++KPM +V++Q Sbjct: 436 GVKRAIPED---DDVFFSHLARKLAAIASLKPQLLKELAANEQDQLYDDIEKPMANVLAQ 492 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 MEI GI +D LK + ++ ++ L +E+ IY +GE+FN++SPKQLG ILF ++K P Sbjct: 493 MEIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEAGEEFNINSPKQLGHILFEEMKLPVI 552 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG +TA D+ + + PI+ NIL++RQ+SKI+STY L + I+ Q+VHT Sbjct: 553 KKTKTGY--STAVDVLEKLAPEAPIVANILQYRQISKIQSTYVVGLLDAIHSADQKVHTR 610 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761 Y T TGRL+S++PNLQNIP++ + G+KIR+AF+ S ++ S+DYSQIELR+LAHI Sbjct: 611 YLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHI 670 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 + F+ DIH A IF +N E+V+P +RR AK +NF I+YGIS + L+ Sbjct: 671 TDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIVYGISDYGLSQN 730 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 + I R +A +I YF +PG+ +Y+++ ++ GYVETI RR + +INS + R Sbjct: 731 IGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQR 790 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 + ER A+N PIQGSAADI + AMI + L+ L MLLQ+HDEL+FE P+EEI Sbjct: 791 SFAERTAMNTPIQGSAADIIKIAMIKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVL 850 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ M+ A + L VPLKV + W Sbjct: 851 EKLVPSVMDSA----VQLAVPLKVESHYGDTW 878 Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 164/305 (53%), Gaps = 11/305 (3%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAF+A L R DGL NAI GF ML ++ K + V Sbjct: 5 LLLIDGNSVAFRAFFALHSQLERFVNPDGLHTNAIYGFNTMLDHMI----KAVEPTDMLV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR +Y +YK R K P Q+P ++ A+GI E++ +EADDII T Sbjct: 61 AFDAGKTTFRTAMYDNYKGGRAKTPSEFSEQMPYIKQLLDAYGIKHYELKDYEADDIIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 A++ G+ T+++ D+DL QL + T + TVK E HV +K GI P ++ Sbjct: 121 LAAQADQTGYTTTVVTGDRDLTQLTTEHTTVAVTVKGVSEVEHYTPAHVEEKLGITPAQI 180 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ LTGD+ DN PG+ +G KTA LL++YG +E I N +KQ K +E+++E E Sbjct: 181 IDMKGLTGDTSDNYPGVTKVGEKTALKLLKQYGTMEGIYENIDAMKQSKMKEHLIEDREQ 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A ++ L ++ D PI + L L + + +L +F + ++F + ++ D A I Sbjct: 241 AAQAKVLATIKRDAPIDVQLADLSYDGPDLDQLAAFYQKMDFQSFLKKLHLQSDEPATPI 300 Query: 300 EPVVL 304 + VL Sbjct: 301 DYTVL 305 >gi|300767153|ref|ZP_07077065.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494972|gb|EFK30128.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 887 Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 206/512 (40%), Positives = 312/512 (60%), Gaps = 16/512 (3%) Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--K 522 ++K + L+R GI + + D++L+SY+LD+ +S+D+ S+A++ + E + K Sbjct: 381 DMKRTTVGLNRLGIQLGKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGK 440 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K +IP D D H I L L +L + +Y+ ++KPM +V++Q Sbjct: 441 GVKRAIPED---DDVFFSHLARKLAAIASLKPQLLKELAANEQDQLYDDIEKPMANVLAQ 497 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 MEI GI +D LK + ++ ++ L +E+ IY +GE+FN++SPKQLG ILF ++K P Sbjct: 498 MEIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEAGEEFNINSPKQLGHILFEEMKLPVI 557 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG +TA D+ + + PI+ NIL++RQ+SKI+STY L + I+ Q+VHT Sbjct: 558 KKTKTGY--STAVDVLEKLAPEAPIVANILQYRQISKIQSTYVIGLLDAIHSADQKVHTR 615 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761 Y T TGRL+S++PNLQNIP++ + G+KIR+AF+ S ++ S+DYSQIELR+LAHI Sbjct: 616 YLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHI 675 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 + F+ DIH A IF +N E+V+P +RR AK +NF I+YGIS + L+ Sbjct: 676 TDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIVYGISDYGLSQN 735 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 + I R +A +I YF +PG+ +Y+++ ++ GYVETI RR + +INS + R Sbjct: 736 IGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQR 795 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 + ER A+N PIQGSAADI + AMI + L+ L MLLQ+HDEL+FE P+EEI Sbjct: 796 SFAERTAMNTPIQGSAADIIKIAMIKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVL 855 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ M+ A + L VPLKV + W Sbjct: 856 EKLVPSVMDSA----VQLAVPLKVESHYGDTW 883 Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 165/305 (54%), Gaps = 11/305 (3%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAF+A L R DGL NAI GF ML ++ K + V Sbjct: 10 LLLIDGNSVAFRAFFALHSQLERFVNPDGLHTNAIYGFNTMLDHMI----KAVEPTDMLV 65 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR +Y +YK R K P Q+P ++ A+GI E++ +EADDII T Sbjct: 66 AFDAGKTTFRTAMYDNYKGGRAKTPSEFSEQMPYIKQLLDAYGIKHYELKDYEADDIIGT 125 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 A++ G+ T+++ D+DL QL + T + TVK E+ HV +K GI P ++ Sbjct: 126 LAGQADQTGYTTTVVTGDRDLTQLTTEHTTVAVTVKGVSEVERYTPAHVEEKLGITPAQI 185 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ LTGD+ DN PG+ +G KTA LL++YG +E I N +KQ K +E+++E E Sbjct: 186 IDMKGLTGDTSDNYPGVTKVGEKTALKLLKQYGTMEGIYENIDAMKQSKMKEHLIEDREQ 245 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A ++ L ++ D PI + L L + + +L +F + ++F + ++ D A I Sbjct: 246 AAQAKVLATIKRDAPIDVQLADLSYDGPDLDQLAAFYQKMDFQSFLKKLHLQSDEPATPI 305 Query: 300 EPVVL 304 + VL Sbjct: 306 DYTVL 310 >gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4] gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24] gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24] gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4] Length = 891 Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 197/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P K+ Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI Q++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E E Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEKLEENKEQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I ++L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|308180373|ref|YP_003924501.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045864|gb|ADN98407.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ST-III] Length = 882 Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 206/512 (40%), Positives = 312/512 (60%), Gaps = 16/512 (3%) Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--K 522 ++K + L+R GI + + D++L+SY+LD+ +S+D+ S+A++ + E + K Sbjct: 376 DMKRTTVGLNRLGIQLGKVDFDLLLVSYLLDTNDNSNDLGSLAEQHGYTDLPSDETVYGK 435 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K +IP D D H I L L +L + +Y+ ++KPM +V++Q Sbjct: 436 GVKRAIPED---DDVFFSHLARKLAAIASLKPQLLKELAANEQDQLYDDIEKPMANVLAQ 492 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 MEI GI +D LK + ++ ++ L +E+ IY +GE+FN++SPKQLG ILF ++K P Sbjct: 493 MEIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEAGEEFNINSPKQLGHILFEEMKLPVI 552 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG +TA D+ + + PI+ NIL++RQ+SKI+STY L + I+ Q+VHT Sbjct: 553 KKTKTGY--STAVDVLEKLAPEAPIVANILQYRQISKIQSTYVIGLLDAIHSADQKVHTR 610 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761 Y T TGRL+S++PNLQNIP++ + G+KIR+AF+ S ++ S+DYSQIELR+LAHI Sbjct: 611 YLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHI 670 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 + F+ DIH A IF +N E+V+P +RR AK +NF I+YGIS + L+ Sbjct: 671 TDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVNFGIVYGISDYGLSQN 730 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 + I R +A +I YF +PG+ +Y+++ ++ GYVETI RR + +INS + R Sbjct: 731 IGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQR 790 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 + ER A+N PIQGSAADI + AMI + L+ L MLLQ+HDEL+FE P+EEI Sbjct: 791 SFAERTAMNTPIQGSAADIIKIAMIKMQDKLQAAGLKATMLLQVHDELIFEAPKEEIPVL 850 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ M+ A + L VPLKV + W Sbjct: 851 EKLVPSVMDSA----VQLAVPLKVESHYGDTW 878 Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 106/305 (34%), Positives = 165/305 (54%), Gaps = 11/305 (3%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAF+A L R DGL NAI GF ML ++ K + V Sbjct: 5 LLLIDGNSVAFRAFFALHSQLERFVNPDGLHTNAIYGFNTMLDHMI----KAVEPTDMLV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR +Y +YK R K P Q+P ++ A+GI E++ +EADDII T Sbjct: 61 AFDAGKTTFRTAMYDNYKGGRAKTPSEFSEQMPYIKQLLDAYGIKHYELKDYEADDIIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 A++ G+ T+++ D+DL QL + T + TVK E+ HV +K GI P ++ Sbjct: 121 LAGQADQTGYTTTVVTGDRDLTQLTTEHTTVAVTVKGVSEVERYTPAHVEEKLGITPAQI 180 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ LTGD+ DN PG+ +G KTA LL++YG +E I N +KQ K +E+++E E Sbjct: 181 IDMKGLTGDTSDNYPGVTKVGEKTALKLLKQYGTMEGIYENIDAMKQSKMKEHLIEDREQ 240 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A ++ L ++ D PI + L L + + +L +F + ++F + ++ D A I Sbjct: 241 AAQAKVLATIKRDAPIDVQLADLSYDGPDLDQLAAFYQKMDFQSFLKKLHLQSDEPATPI 300 Query: 300 EPVVL 304 + VL Sbjct: 301 DYTVL 305 >gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 887 Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 205/531 (38%), Positives = 322/531 (60%), Gaps = 16/531 (3%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 S LK E+ K ++K L+R GI D++L SY++D+ ++S+D+ + Sbjct: 364 SPLKGMLEDSAVQKNVFDLKRTTYGLYRLGIKAESLSFDLLLASYLVDNEKNSNDLGELV 423 Query: 510 QKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 Q + + K L K + + IP D D+ H + I L L +L + Sbjct: 424 QGYDYFDLKTDLEVYGKGKNAKIPAD---DAVFFNHLAGKTAAIAALKDSLLKQLKDHEQ 480 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 +Y+ ++ P V+++ME+ GI++ LK++ + + L LEE IY +GE+FNL+S Sbjct: 481 DDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNS 540 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQLG ILF KL P KTKTG + T+ + L Q+ +P++ +ILE+RQ+SKI+STY Sbjct: 541 PKQLGVILFEKLGLPVIKKTKTG-YSTSVEVLNQLKE-QSPVVSDILEYRQISKIQSTYV 598 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 L + I++R R+HT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P Sbjct: 599 KGLLDVIDERDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSPDGY 658 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKT 803 + S DYSQIELR+LAH++ + + F+ DIH A +IF ++ +++V+ RR AK Sbjct: 659 IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKA 718 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R +A ++I YF ++PGI Y+++ R+ GY ETI Sbjct: 719 VNFGIVYGISDYGLSKNLDISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIM 778 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I++ ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TKM++Q Sbjct: 779 HRRRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQ 838 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDEL+F+VP +E+ T +I+ M+ A + L VPL + ++W E Sbjct: 839 VHDELIFDVPADELETIQKIVPSVMQAA----VKLDVPLVADAGWGHDWYE 885 Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 103/286 (36%), Positives = 153/286 (53%), Gaps = 11/286 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAF+A K +GL NA+ F NML +L K+ SH V Sbjct: 6 LLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVL----KQEDPSHILV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR +Y DYK R K P L QLP +R + GI + E+ +EADDII T Sbjct: 62 AFDAGKTTFRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + G+ V ++S DKDL QL S +Y T K E +H+ + G+ P + Sbjct: 122 MAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNGVTPTEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD DN PG+ +G KTA+ L+QEYG++EN+ + +K+ K +EN++ + Sbjct: 182 IDMKALMGDPSDNYPGVAKVGPKTASKLIQEYGSVENLYNHVDEMKKSKLKENLIASKDN 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 A L +KL + D P+ + L+ L E N L F + + F + + Sbjct: 242 ALLGKKLATINCDSPVEVTLDDLSYEGSNIDDLRRFYEKMNFRRFL 287 >gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9] gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9] Length = 872 Score = 362 bits (930), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 222/553 (40%), Positives = 337/553 (60%), Gaps = 38/553 (6%) Query: 439 STGKNTLTKEILSY--LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSY 494 S GK+T+ ++ LK+ FE E F H IK D LV Y GI + + D +M+Y Sbjct: 335 SFGKDTVYIDVFQTEDLKEIFEKEDFEFTTHEIK-DFLVRLSYKGIECKSKYIDTAVMAY 393 Query: 495 VLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551 +L+ S++D+ + +K+L + + I + I++I ++ + ++ + Sbjct: 394 LLNPSESNYDLDRVLKKYLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICSRCVYLFD 453 Query: 552 LWLLLRPKLIVEKLLHVYERLDK---------PMIDVVSQMEITGIQIDQDLLKQVSAEI 602 L EKL++ E +D P+++V+ ME++G +D+++LK++S +I Sbjct: 454 LK---------EKLMNFIEEMDMKKLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKI 504 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + + + IY +G +FN++SPKQL + LF KL P KTKTG + T ++ LEQ+ Sbjct: 505 DDRIGEILDKIYKEAGYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVLEQL-V 562 Query: 663 GDNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 N I+ +I+E+RQL+K+KSTY D LP + RVH+ + T TGR++S EPNLQ Sbjct: 563 PYNDIVSDIIEYRQLTKLKSTYIDGFLP--LMDENNRVHSNFKQMVTATGRISSTEPNLQ 620 Query: 722 NIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 NIPI+ + G++IRRAFI P ++ ++SADYSQIELR+LAH++ L + F N+ DIH Sbjct: 621 NIPIREEFGRQIRRAFI-PRSRDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHL 679 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 A+E+F V +EKV+P+MRR AK +NF IIYGIS + L+ L+I R EA +YI YF R+ Sbjct: 680 RTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERY 739 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 G+ EYIEK F ++NGYV TI RR + EINS + R+ ER A+NAPIQGSAADI Sbjct: 740 KGVKEYIEKIVRFAKENGYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADI 799 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + AM+ V+ L+ KL +K++LQ+HDELV + ++E+ +I+ +ME + L+ Sbjct: 800 IKMAMVKVYNDLKKLKLKSKLILQVHDELVVDTYKDEVDIIKKILKENMENV----VQLK 855 Query: 960 VPLKVNIKVSNNW 972 VPL V I V NW Sbjct: 856 VPLVVEIGVGPNW 868 Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 110/286 (38%), Positives = 177/286 (61%), Gaps = 10/286 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DGSS +YRA+YA P+L+ +GLP NA+ GF ML KL++ + + IA + FD Sbjct: 4 FLIIDGSSLMYRAYYALPMLT-TSEGLPTNALYGFTMMLIKLIEEEKPDYIA----IAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y DYKA R +PE L Q+ ++ F I +E++G+EADDII T + Sbjct: 59 KKAPTFRHKEYQDYKATRQAMPEELAEQVDYLKEIIDGFNIKTLELEGYEADDIIGTISK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 +AE++G V +++ D+D +QLVS + + K E+ D + +++++GI P++ + L Sbjct: 119 LAEEKGMEVLVVTGDRDALQLVSDKVKIKISKKGITQMEEFDEKAILERYGITPQQFIDL 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+P IG KTA LL+++G +EN++ N S++K K +ENI E A + Sbjct: 179 KGLMGDKSDNIPGVPNIGEKTAIKLLKDFGTIENLIQNLSQLKG-KIKENIENNKELAIM 237 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 S++L ++ D+PI I E ++ N +L+ LEF LI+ + Sbjct: 238 SKRLATIKRDIPIEIDFEEYKVKKFNEEKLLELFNKLEFFSLIDNI 283 >gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196] gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196] Length = 924 Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 197/526 (37%), Positives = 312/526 (59%), Gaps = 23/526 (4%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASI 508 LS L+ E+ K H++K L I++RG +D+ML SY+L+ ++H ++ + Sbjct: 419 LSTLRPLLEDATIPKRVHDLKSTLRALSTQDIALRGAVDDVMLYSYLLNPTHTTHRLSDV 478 Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 ++ ++ +E + ++ +P E ++ I L LR ++ E L V Sbjct: 479 TARFRNHALRE---TGENELP--------------EAAHAIFTLAPTLREEVEREDTLKV 521 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 YE++D P+ V+ ME G++ID ++L+ + ++ ++ + + IY+ +G +FN++SPKQ Sbjct: 522 YEQIDLPLAPVLLAMEQHGVRIDSEMLRALGDRLAADMHRVSQQIYEQAGHRFNINSPKQ 581 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LGD+LF K+ P K G+ +TAQD+ + N + + +LE+RQL+K+KS Y DSL Sbjct: 582 LGDVLFNKMNLPRPLKYGKGKVISTAQDVLEELAAHNDVPRLVLEFRQLAKLKSNYVDSL 641 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748 P + + RVHT + T TGRL+S PNLQNIP++T LG++IR AFI+ P +KL+SA Sbjct: 642 PLLADSQG-RVHTTFHQVGTATGRLSSTNPNLQNIPVRTALGREIRAAFIAAPGRKLLSA 700 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELR++AH ++ L + DIH + A+E+FGV E + + R AK +NF I Sbjct: 701 DYSQIELRLMAHFSEDPLLLNAYSTGQDIHTLTASEVFGVAPEAMDKETRNRAKAVNFGI 760 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGISPF LA QL I + EA YI YF R+ G+ YI++ R+ V T+FGR Sbjct: 761 VYGISPFGLAQQLGIDQHEARQYIDTYFARYQGVRAYIDRVLEQTRREQRVRTLFGRVRP 820 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +I S ++ R ER A+N P+QG+AAD+ + AMI + ++ L T M LQ+HDEL Sbjct: 821 IPDIQSRNANQRGFAERTAVNTPLQGTAADLIKLAMIRIDARIKKKNLQTLMTLQVHDEL 880 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +F+VPE E+ ++ H ME + L+VP+ +I + NW++ Sbjct: 881 LFDVPEAEVEVVEDLVRHEMEHV----VELKVPIVADIGIGENWRD 922 Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 109/305 (35%), Positives = 170/305 (55%), Gaps = 32/305 (10%) Query: 7 LFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 +FL+D SFI+RA++A P+ +R G+P A F NM+ KL R++ FA Sbjct: 12 VFLLDSMSFIFRAYHAMQRQRPMSTRA--GVPTAATYVFVNMINKL----RRDFAPEFFA 65 Query: 63 VIFDYPAVTFRNEI---------------------YPDYKANRPKIPEMLLPQLPLVRLA 101 +FD A FR+E Y YKANR ++P L QLP +R A Sbjct: 66 AVFDVSAPVFRDERAKAMATIRKWNAKTQKFDEVEYAGYKANREEMPADLAQQLPYIRRA 125 Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161 +AF IP ++ +GFEADD+I T A +G V ++S DKD+MQLV+ + + K+ Sbjct: 126 LEAFRIPILQAEGFEADDVIGTLAREAAAQGHPVFVVSNDKDMMQLVNEQVKILNPAKDN 185 Query: 162 KI-DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220 + D E VI+ G+PPE+++ + AL GD+IDN+PG PGIG K + L+Q++G++E L Sbjct: 186 LVLDREKVIETLGVPPERVIDVMALRGDAIDNVPGAPGIGEKGSVDLIQQFGSVEAALDR 245 Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280 A+ +K+K RE++ + LS++LV + VP+ + L+ + + + + LE Sbjct: 246 AAEVKRKTYRESLENNRDNILLSKELVTIDCAVPLPLDLDAMRTQPPDAAACRTLFTELE 305 Query: 281 FTKLI 285 FT L+ Sbjct: 306 FTSLL 310 >gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex Wi Abasic Site gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna Pol In Complex With A Blunt-Ended Dna And Ddatp gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus In A Closed Ternary Complex With Trapped 4'- Ethylated Dttp gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus In A Closed Ternary Complex With Trapped 4'- Methylated Dttp gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Processing C5 Modified Thymidines gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Processing C5 Modified Thymidies Length = 540 Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+ + +D ML++Y+LD ++ + +A+++ +E Sbjct: 70 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 109 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A + + LW L + E+LL +Y +++P+ V++ ME TG+++D L+ Sbjct: 110 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 166 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656 +S E+++ + LE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 167 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 226 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++ +T TGRL+S Sbjct: 227 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 285 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IRRAFI+ L++ DYSQIELR+LAH++ L +VF+ D Sbjct: 286 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 345 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+ +FGV E V P MRR AKTINF ++YG+S RL+ +L IP EA +I+RYF Sbjct: 346 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 405 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IEKT R+ GYVET+FGRR + ++ + S+R ER A N P+QG+A Sbjct: 406 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 465 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + LE+ + +MLLQ+HDELV E P+E +++ ME P Sbjct: 466 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 520 Query: 957 NLRVPLKVNIKVSNNW 972 L VPL+V + + +W Sbjct: 521 -LAVPLEVEVGIGEDW 535 >gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514] gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561] gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513] gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514] gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561] gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513] Length = 872 Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 220/537 (40%), Positives = 330/537 (61%), Gaps = 36/537 (6%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ 510 LK+ FE E F H IK D LV Y GI + + D +M+Y+L+ S++D+ + + Sbjct: 351 LKEIFEKEKFEFTTHEIK-DFLVKLSYKGIECKSKYMDTAIMAYLLNPSESNYDLDRVLK 409 Query: 511 KWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 K+L + +E+ + +++I + + ++ + L EKL++ Sbjct: 410 KYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLR---------EKLMN 460 Query: 568 VYERLDK---------PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 E +D P+++V+ ME++G +D+++LK++S +I+ + + + IY +G Sbjct: 461 FIEEMDMKRLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAG 520 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 +FN++SPKQL + LF KL P KTKTG + T ++ LEQ+ N I+ +I+E+RQL+ Sbjct: 521 YQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVLEQL-VPYNNIVNDIIEYRQLT 578 Query: 679 KIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 K+KSTY D LP + RVH+ + T TGR++S EPNLQNIPI+ + G++IRRAF Sbjct: 579 KLKSTYIDGFLP--LMDENNRVHSNFKQMVTSTGRISSTEPNLQNIPIREEFGRQIRRAF 636 Query: 738 ISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 I P TK ++SADYSQIELR+LAH++ L + F N+ DIH A+E+F V +EKV+P Sbjct: 637 I-PRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTP 695 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 +MRR AK +NF IIYGIS + L+ L+I R EA +YI YF R+ G+ EYIEK F ++ Sbjct: 696 EMRRVAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKE 755 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 NGYV TI RR + EINS + R+ ER A+NAPIQGSAADI + AM+ V+ LE K Sbjct: 756 NGYVITIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVRVYNDLEKLK 815 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 L +K++LQ+HDELV + ++E+ +I+ +ME + L+VPL V I V NW Sbjct: 816 LKSKLILQVHDELVVDTYKDEVEIVKKILKDNMENV----VQLKVPLVVEIGVGPNW 868 Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 115/296 (38%), Positives = 180/296 (60%), Gaps = 10/296 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DGSS +YRA+YA P+L+ +GL NA+ GF ML KL++ + + I A+ FD Sbjct: 4 FLVIDGSSLMYRAYYALPMLT-TSEGLHTNALYGFTMMLIKLIEEEKPDYI----AIAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y DYKA R +PE L Q+ L++ + F I +E++G+EADDII T + Sbjct: 59 KKAPTFRHKEYQDYKATRQAMPEELAEQVDLLKEIIEGFNIKILELEGYEADDIIGTISK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 +AE++ V +++ D+D +QLVS + + K E+ D + V++++ I P + + L Sbjct: 119 LAEEKEMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEEFDEKAVLERYEITPHQFIDL 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPGIP IG KTA LL+++G +EN+L N S++K K +ENI E A + Sbjct: 179 KGLMGDKSDNIPGIPNIGEKTAIKLLKDFGTIENLLQNLSQLKG-KIKENIENNKELAIM 237 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 S+KLV ++ D+PI I E +++ N +L+ LEF LI+ + D + N Sbjct: 238 SKKLVTIKRDIPIEIDFEEYRVKEFNEEKLLEIFNKLEFFSLIDSIKKKNDVEIVN 293 >gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109] gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109] Length = 896 Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 197/529 (37%), Positives = 299/529 (56%), Gaps = 5/529 (0%) Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDI 505 K+I L+ + + KI ++K + RYG + G DI+L SY+L+ R I Sbjct: 366 KDIWEILEPLWSDPGIAKISPDLKTAMIWGERYGHPLVGSVSDILLASYLLNPVRFDQTI 425 Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 ++A L + + + +A +LW L +L EKL Sbjct: 426 ENVALLDLGLNLLSPRELAGRPLAASDLPLELAIGYAAGRGQAAFRLWPRLHQQLQQEKL 485 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 L +YE L+ P++ V++ ME GI++D D L++ E+ K L SLEE I++++GE F + S Sbjct: 486 LRLYEDLELPVLRVLAAMETRGIRVDLDFLQRFGREVEKELASLEEEIHEMAGEPFLIQS 545 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 P QL ILF +L+ P+ KTK +T ++ +PI ++ +R L K+K+TY Sbjct: 546 PPQLAAILFDRLQLPTQKKTKGRTAYSTDNEVLTALADYHPIAAKVIAYRTLGKLKATYV 605 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745 D L ++ + R+HT + + TGRL+S +PNLQNIP++ +LG ++R+AF+ Sbjct: 606 DGLCKQVHPASGRIHTTFVQSVAATGRLSSRDPNLQNIPVRGELGAQLRQAFLPSSGYIF 665 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 IS DYSQIELR+LAH + L Q F+ D+HR AAE+FG++ E VS +MRR AK IN Sbjct: 666 ISGDYSQIELRLLAHFSADPVLLQAFQEGEDVHRQTAAEVFGLHPELVSREMRRQAKVIN 725 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F IIYG+S F LA QL + + A D+I RYF R G+ Y ++ + RQ G+V T+ GR Sbjct: 726 FGIIYGMSAFGLAKQLNVSQRLAQDFINRYFARHTGVKRYFDQALDTARQKGWVTTLLGR 785 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R ++S ++R ER+A+N P+QGSAAD+ ++AM++V +L L+ ++LLQIH Sbjct: 786 RRPIPHLHSSNRNLRQEAERSALNTPLQGSAADLIKKAMLAVEAALVHEGLSGRLLLQIH 845 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DEL+ E P +E + +ME LR PL V+I+ NW E Sbjct: 846 DELLLEAPYQEQAATVDCLRRAMEGVA----QLRTPLVVDIQTGENWGE 890 Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 111/283 (39%), Positives = 163/283 (57%), Gaps = 5/283 (1%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+D SS++YRAF+A L+ G P NAI G NML K+L +E S+ A++FD Sbjct: 19 ILLIDISSYLYRAFHAIRSLATSQ-GFPTNAIYGVTNMLLKVL----RERQPSYLALVFD 73 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ YP YKA+RP +PE L+ QL +R A +PA+E++G+EADD+IA Sbjct: 74 AKGPTFRHRRYPAYKAHRPGMPEDLVKQLGYIRQIITALNLPALEMEGYEADDLIAALAR 133 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A G V IIS DKDL+ L ++D +K+ + + +K+G+PP +V L+ALT Sbjct: 134 QARAAGLRVEIISGDKDLLPLAQEGVTIWDPMKDVYFTPQVIQEKFGLPPAALVDLRALT 193 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD DNIPG PGIG KTA L+ + +L+N+ + +K+KK + + +Y E RLSR L Sbjct: 194 GDPSDNIPGAPGIGPKTALKLIGHFHSLDNLFAHLDEVKEKKLQNRLRDYQEQVRLSRDL 253 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 + L P+ + L + L LEF+KL ++ Sbjct: 254 LRLEDQAPVAFDPDRLQPGPPDRAALRRLFAELEFSKLAKEIS 296 >gi|257869278|ref|ZP_05648931.1| DNA polymerase A [Enterococcus gallinarum EG2] gi|257803442|gb|EEV32264.1| DNA polymerase A [Enterococcus gallinarum EG2] Length = 881 Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 214/536 (39%), Positives = 314/536 (58%), Gaps = 28/536 (5%) Query: 456 FFENEHFL---------KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505 FENE+F+ K ++ K + L+RY + +G D +L +Y+LD+ S++DI Sbjct: 355 LFENEYFIAWLKNASSQKKVYDAKRTYVALNRYAAAPQGIVFDTLLAAYLLDTNDSNNDI 414 Query: 506 ASIAQKWLSYTRKE----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561 A +A+ + Y + K K +P D + H I L + L +L Sbjct: 415 AGVAKHYGFYAIQSDEAIYGKGVKRGLPAD---EEVFFAHLARKVAAINYLSVRLAKELA 471 Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 + ++ ++ P+ ++++MEITGI++D L Q+ E ++ L +E+ IY +GE+F Sbjct: 472 EKNQTALFTDMELPLSKILAEMEITGIRVDASRLHQMKGEFAERLHEIEQKIYQEAGEEF 531 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 NL+SPKQLG ILF K+ P KTKTG + T LEQ+ PI+++IL +RQ++KI+ Sbjct: 532 NLNSPKQLGVILFEKMGLPVIKKTKTG-YSTAVDVLEQLKE-QAPIVEDILIYRQIAKIQ 589 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 STY + L I + +VHT Y T TGRL+S++PNLQNIPI+ + G+KIR AF+ P Sbjct: 590 STYVEGLLKVI-QGDGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFV-PR 647 Query: 742 TKKLI--SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMR 798 K + S+DYSQIELR+LAHI+ L F DIH A +FG++ E+V+P MR Sbjct: 648 AKDWVIYSSDYSQIELRVLAHISNDEHLKAAFVEGQDIHSSTAMRVFGISTPEEVTPNMR 707 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 R AK +NF I+YGIS + L+ L I R A YI YF ++PG+ Y+E+ + GY Sbjct: 708 RQAKAVNFGIVYGISDYGLSQNLGITRKAAQQYIDTYFEKYPGVKTYMEEVVREAKDKGY 767 Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 VET++ RR + +INS ++R ER AIN PIQGSAADI + AMI + + L++ KL Sbjct: 768 VETLYHRRRYLPDINSRNFNLRTFAERTAINTPIQGSAADILKIAMIDLDRRLKEEKLQA 827 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 MLLQ+HDELVFEVPE+E+ ++ ME A ++L VPL + W E Sbjct: 828 TMLLQVHDELVFEVPEDELERLDALVKEVMENA----VSLHVPLLTDSNWGKTWYE 879 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 113/329 (34%), Positives = 173/329 (52%), Gaps = 21/329 (6%) Query: 4 ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +N L LVDG+S +RAF+A L R ++GL NAI F M +N + +H Sbjct: 3 KNKLLLVDGNSVAFRAFFALHNSLERFKNNNGLHTNAIYAFHTMF----ENVMAKEQPTH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR +Y +YK R K P Q+P +R A G+ E+ +EADDI Sbjct: 59 VLVAFDAGKTTFRTAMYEEYKGGRSKTPGEFKEQMPYIRELITALGVQYYELDNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175 I T +KE F V ++S D+DL QL + + TVK E +HV +K+ G+ Sbjct: 119 IGTLAQKVDKEQFDVVVLSGDRDLTQLATDHVKVDITVKGVSEIESYTPDHVAEKYDGLA 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ ++ L GD+ DNIPG+ IG KTA LL+EYG++E I + +K K +EN+L Sbjct: 179 PLQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKEYGSVEGIYEHIDEMKPSKMKENLLN 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 ETA LS+KL + D P+ + ++ L E + +LI F + + F + ++ + Sbjct: 239 DKETAFLSKKLATIDVDAPVDVAIDSLKYEGKDLDKLIPFYQEMNFNSFLEKLNVV--TE 296 Query: 296 AANIEPVVLDINT-------TENKGIAIE 317 +E ++ D+ T TE+ + IE Sbjct: 297 PEEMEDILFDVVTEVTPEMFTEDMALYIE 325 >gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885] gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885] Length = 1060 Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 194/491 (39%), Positives = 290/491 (59%), Gaps = 21/491 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L +Y+LD R+ + + +A+++ + +E P D+ D + + + Sbjct: 579 DLKLAAYLLDPVRNRYYLVDVARQFFGWELEEG--------PADRPDDPACRTTQLLGRD 630 Query: 548 VILQLWLLLRP----KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 L LRP +L L VY ++ P++ V++ ME GI +D+ L+++ + Sbjct: 631 AAL--CARLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRLFT 688 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L E IY L+GE FN++S +QLG ILF +L P KTKTG + T A+ LE + Sbjct: 689 RRSQELAEQIYQLAGETFNINSTQQLGQILFERLGLPVVKKTKTG-YSTDAEVLETL-AA 746 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 +PI + +LE+R L K++ TY D L HI RVHT + TGRL+S +PNLQNI Sbjct: 747 RHPIAELVLEYRSLVKLQGTYVDGLAEHIGP-DGRVHTTFQQTVAATGRLSSTQPNLQNI 805 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 PI+ + G+ +RRAF++PP +L++ADYSQIELR+LAH + L + F D+H A+ Sbjct: 806 PIRDEPGRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDEGLLEAFARGQDVHARTAS 865 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 EIFGV +E+V+P+ RR AK +NF + YG + + LA LRI R++A ++ RYF R+PG+ Sbjct: 866 EIFGVPLEQVTPEQRRVAKAVNFGLAYGQTDYGLARALRIDRADARRFMDRYFERYPGVK 925 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 Y+E+T RQ+G V T+ GRR EI IR ER AIN PIQG+AADI + A Sbjct: 926 RYMEETIRRARQHGEVTTLLGRRRPVPEIRHRVYHIRQNAERVAINTPIQGTAADIMKLA 985 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 MI V+++L L +++LQ+HDEL+ E PE+E+ + ++ ME A L VPL Sbjct: 986 MIRVYRALAGEGLRARIVLQVHDELLVEAPEDEVPAVAALLRREMEGA----FPLAVPLV 1041 Query: 964 VNIKVSNNWQE 974 V++K NW E Sbjct: 1042 VDVKAGTNWYE 1052 Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 110/293 (37%), Positives = 164/293 (55%), Gaps = 10/293 (3%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + + L L+DG S +YRAF+A P L+ DG+P NA+ GF ML +LL+ E + Sbjct: 7 RPDTKLVLIDGHSLMYRAFFALPPLA-TADGVPTNAVYGFLTMLLRLLE----EVAPQYI 61 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD FR E +P YK +RP+ P+ L PQ PLV+ A G+ +E +GFEADD++ Sbjct: 62 GVAFDRGLPAFRVERFPAYKGHRPEQPDELRPQFPLVKDVLAAMGVATVEHEGFEADDLL 121 Query: 122 ATYTYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 T + A G V +++ D+D++QLV + T K ++ D + ++ GI P Sbjct: 122 GTLAHRARAAGVDRVLLVTGDRDVLQLVGDGVEVLLTRKGISDLQRYDEARIREEMGIAP 181 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + ++AL GD DNIPG+PGIG KTA L+Q++G+LE +L KK + +Y Sbjct: 182 AQFLDVKALMGDPSDNIPGVPGIGEKTALKLIQQFGDLETVLARPEAAGGKKLPGLLRQY 241 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A+ ARLSR+L +RTD P+ E + L L LEF L++R+ Sbjct: 242 ADQARLSRELARIRTDAPVEFDPERFARRPPDPAVLRPLLLRLEFRSLVDRLG 294 >gi|194017403|ref|ZP_03056015.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061] gi|194011271|gb|EDW20841.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061] Length = 879 Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 203/507 (40%), Positives = 317/507 (62%), Gaps = 20/507 (3%) Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL-KSRKSSI 528 + L + + ++G + D++L SYV++ +S D+AS+A+++ ++ + +++ K K +I Sbjct: 381 VALRWHDVDLKGVDNDVLLASYVVNPQKSYEDVASVAKEYGLNIALSDEKVYGKGAKQAI 440 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 P + +++ H + I L L L +YE L+ P+ ++ +ME G+ Sbjct: 441 P----PEDELKGHLGRKAAAISALHDLTLEALEKNDQHELYEDLELPLALILGEMESLGV 496 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 ++D L+++ E++K L EE I+ L+GE FN++SPKQLG ILF KL P KTKTG Sbjct: 497 KVDLKRLEKMGEELTKKLKEYEETIHRLAGETFNINSPKQLGVILFEKLGLPIIKKTKTG 556 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T+A LE++ + II++IL +RQ+ K++STY + L K T +VHT ++ A T Sbjct: 557 -YSTSADVLEKLE-DKHEIIRSILHYRQIGKLQSTYVEGLMKVTRKDTHKVHTRFNQALT 614 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKIT 765 TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+K+ + +ADYSQIELR+LAHI++ Sbjct: 615 QTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSKEGWLMFAADYSQIELRVLAHISQDE 672 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L + F +DIH A ++F V+ E+V+ MRR AK +NF I+YGIS + L+ L I R Sbjct: 673 NLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITR 732 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EAA +I+RY F G+ Y+E+ +Q GYV T+ RR + +I S +I++ ER Sbjct: 733 KEAAAFIERYLTSFKGVKTYMEEIVQEAKQKGYVTTLLKRRRYIPDITSRNFNIKSFAER 792 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 A+N PIQGSAADI ++AMI + + L++ L T +LLQ+HDEL+FE P+EEI +I+ Sbjct: 793 TAMNTPIQGSAADIIKKAMIDMARRLKEENLQTNLLLQVHDELIFEAPKEEIAILEKIVP 852 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972 ME A + L VPLKV+ +W Sbjct: 853 EVMENA----LQLDVPLKVDFASGPSW 875 Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 114/299 (38%), Positives = 169/299 (56%), Gaps = 9/299 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDG+S YRAF+A PLLS G+ NAI GF +L K+L++ + +H Sbjct: 1 MTDKKKLVLVDGNSLAYRAFFALPLLSNDK-GVHTNAIYGFAMILMKMLEDEK----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + +YK R K P L Q+P +R A+ + E+ +EADDI Sbjct: 56 MLVAFDAGKTTFRHETFKEYKGGRQKTPPELSEQMPFIRELLDAYQVKRYELPQYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T AEK GF V I S DKDL QL + T + T K E H+ +K+G+ P Sbjct: 116 IGTLAVEAEKNGFEVKIFSGDKDLTQLSTDHTTVAITKKGITEVEYYTPAHIEEKYGLRP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 ++++ ++ L GDS DNIPG+PG+G KTA LL+++ +EN+L + + KK +E + EY Sbjct: 176 DQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFETVENLLEHIDEVNGKKLKEKLEEY 235 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E A +S++L + + PI + + L E + ++IS K L F L+ R+ + D Sbjct: 236 KEQAVMSKELATILVEAPIDVSSKDLAYEGPHMDQVISLYKELGFQTLLERLGEAPETD 294 >gi|172058211|ref|YP_001814671.1| DNA polymerase I [Exiguobacterium sibiricum 255-15] gi|171990732|gb|ACB61654.1| DNA polymerase I [Exiguobacterium sibiricum 255-15] Length = 865 Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 206/527 (39%), Positives = 324/527 (61%), Gaps = 19/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLD-SGRSSHDIASIAQK 511 + + E++H KI + K L ++G+ + F+D++L Y+L+ SG ++ +ASIA Sbjct: 351 FRDWIESDH-QKICLDAKQAAFALRKHGLKLTAFDDLLLAGYLLNLSGGTT--LASIAGH 407 Query: 512 WLSYTRKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 ++ E + K K P D + + + E + +I L+ ++ +L + + Sbjct: 408 YMLMAPNEEAVLGKGAKRLAPADDV----LHPYLAEKARMIELLFPKVKEELKANQQFEL 463 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 YE L++P+ V+++ME TGI++D L+++ +++ L LE+ IY GE+FN++SPKQ Sbjct: 464 YETLERPLSGVLAEMEWTGIRVDVGTLQEMQHDLAGRLHDLEQLIYGEVGEEFNINSPKQ 523 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LG ILF K++ P+ KTKTG + T A LE++ +P+I +I+ +R+L K++STY + L Sbjct: 524 LGVILFEKMELPAFKKTKTG-YSTAADVLEKLRPL-HPVIDHIMLYRELQKLQSTYVEGL 581 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747 I K ++HT ++ TGRL+S+ PNLQNIP++ + G+KIR+AF+ S P L + Sbjct: 582 QKVI-KEDGKIHTRFAQTIAQTGRLSSVNPNLQNIPVRIEEGRKIRKAFVPSEPGWSLYA 640 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIELR++AH+++ L Q F + DIH A+ +FGV V+ MRR AK +NF Sbjct: 641 ADYSQIELRVMAHMSEDKTLVQAFLDDADIHTQTASSVFGVAPNDVTGNMRRQAKAVNFG 700 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 IIYGIS + L+ L I R EA D+I RYF FP I +++ R NG+VET+ RR Sbjct: 701 IIYGISDYGLSQNLNISRKEAQDFIDRYFELFPQIKLFMDAAIEKARMNGFVETLMNRRR 760 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + +INS ++R ER AIN PIQGSAADI ++AM+ VH +LE L ++LLQ+HDE Sbjct: 761 NIPDINSKNFNLRGFAERTAINTPIQGSAADIIKKAMLDVHAALEQSPLRARLLLQVHDE 820 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+FE P+EE+ ++ +ME+ + L VPL+V+ ++W E Sbjct: 821 LIFEAPDEELDALKTLVKQAMEQT----VQLSVPLRVDGDAGHSWYE 863 Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 110/294 (37%), Positives = 167/294 (56%), Gaps = 19/294 (6%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DG+S YRAF+A P ++ G NA GF ML KLL+ E +H V Sbjct: 3 ENKLLLIDGNSLTYRAFFALPPMTDAQ-GRNTNAAYGFTMMLLKLLE----EEQPTHMLV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD + TFR+++Y +YK +R K P L Q P+VR +A GI +E+ +EADD+I T Sbjct: 58 AFDASSETFRHDVYQEYKGSREKTPSELREQFPIVRDICEALGIQMMELHRYEADDLIGT 117 Query: 124 Y--TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK------WGIP 175 T A++ + I++ DKDL+QLV+ + T K D+ + ++ G+ Sbjct: 118 LAQTMPADR----IRIVTGDKDLLQLVTSQVEVLIT-KRGITDVLCMTEELFAETYGGLK 172 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +M+ L+ L GD DNIPG+PGIG KTA L+ YG++E + + +K K++E ++ Sbjct: 173 PIQMIDLKGLMGDKSDNIPGVPGIGEKTAIKLISAYGSVEGLYEHVEDLK-GKQKEKVVA 231 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 E ARLS++L ++ DVP+ + L+ L + D + S ++L F L NR A Sbjct: 232 NEELARLSKELATIKLDVPLDVTLDDLQISDVDTQVPYSLFQSLGFKSLTNRFA 285 >gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase Length = 543 Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+ + +D ML++Y+LD ++ + +A+++ +E Sbjct: 73 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 112 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A + + LW L + E+LL +Y +++P+ V++ ME TG+++D L+ Sbjct: 113 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 169 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656 +S E+++ + LE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 170 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 229 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++ +T TGRL+S Sbjct: 230 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 288 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IRRAFI+ L++ DYSQIELR+LAH++ L +VF+ D Sbjct: 289 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 348 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+ +FGV E V P MRR AKTINF ++YG+S RL+ +L IP EA +I+RYF Sbjct: 349 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 408 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IEKT R+ GYVET+FGRR + ++ + S+R ER A N P+QG+A Sbjct: 409 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 468 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + LE+ + +MLLQ+HDELV E P+E +++ ME P Sbjct: 469 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 523 Query: 957 NLRVPLKVNIKVSNNW 972 L VPL+V + + +W Sbjct: 524 -LAVPLEVEVGIGEDW 538 >gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 887 Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 205/531 (38%), Positives = 322/531 (60%), Gaps = 16/531 (3%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 S LK E+ K ++K L+R GI D++L SY++D+ ++S+D+ + Sbjct: 364 SPLKGMLEDSAVQKNVFDLKRTTYGLYRLGIKAESLTFDLLLASYLVDNEKNSNDLGELV 423 Query: 510 QKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 Q + + K L K + + IP D D+ H + I L L +L + Sbjct: 424 QGYDYFDLKTDLEVYGKGKNAKIPAD---DAVFFNHLAGKTAAIAALKDSLLKQLKDHEQ 480 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 +Y+ ++ P V+++ME+ GI++ LK++ + + L LEE IY +GE+FNL+S Sbjct: 481 DDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEFNLNS 540 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQLG ILF KL P KTKTG + T+ + L Q+ +P++ +ILE+RQ+SKI+STY Sbjct: 541 PKQLGVILFEKLGLPVIKKTKTG-YSTSVEVLNQLKE-QSPVVSDILEYRQISKIQSTYV 598 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 L + I++R R+HT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P Sbjct: 599 KGLLDVIDERDGRIHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSSPDGY 658 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKT 803 + S DYSQIELR+LAH++ + + F+ DIH A +IF ++ +++V+ RR AK Sbjct: 659 IYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKA 718 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R +A ++I YF ++PGI Y+++ R+ GY ETI Sbjct: 719 VNFGIVYGISDYGLSKNLDISRKQAKEFIDEYFEQYPGIQAYMDRAVKDAREKGYAETIM 778 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I++ ++R+ ER AIN+PIQGSAADI + AMI++ K L++ L TKM++Q Sbjct: 779 HRRRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIMKIAMINMQKKLDELGLKTKMVVQ 838 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDEL+F+VP +E+ T +I+ M+ A + L VPL + ++W E Sbjct: 839 VHDELIFDVPADELETIQKIVPSVMQAA----VKLDVPLVADAGWGHDWYE 885 Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 104/290 (35%), Positives = 154/290 (53%), Gaps = 11/290 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAF+A K +GL NA+ F NML +L K+ SH V Sbjct: 6 LLLIDGNSVAFRAFFAMYQQLDKFKNPEGLHTNALYAFKNMLDVVL----KQEDPSHILV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR +Y DYK R K P L QLP +R + GI + E+ +EADDII T Sbjct: 62 AFDAGKTTFRTAMYKDYKGGRDKTPAELSEQLPYLREMLKDMGIKSYELANYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + G+ V ++S DKDL QL S +Y T K E +H+ + G+ P + Sbjct: 122 MAKKGAEAGYEVAVVSGDKDLTQLASDHVTVYVTKSGVTKLEAFTPDHMKEVNGVTPTEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD DN PG+ +G KTA L+QEYG++EN+ + +K+ K +EN++ + Sbjct: 182 IDMKALMGDPSDNYPGVAKVGPKTAFKLIQEYGSVENLYNHVDEMKKSKLKENLIASKDN 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A L +KL + D P+ + L+ L E N L F + + F + + +A Sbjct: 242 ALLGKKLATINCDSPVEVTLDDLSYEGSNIDDLRRFYEKMNFRRFLADLA 291 >gi|295397475|ref|ZP_06807558.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563] gi|294974275|gb|EFG50019.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563] Length = 907 Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 208/583 (35%), Positives = 342/583 (58%), Gaps = 18/583 (3%) Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457 T+D F S+P A + + ++ + + S+ TG L + L K + Sbjct: 335 TVDHFPSEPAADGYAIYLENLSKNYHDSEVVAVAWTNGSEIFTGDARLLQADL--FKAWL 392 Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKW---- 512 ++ K+ + K K++L GI G +D+++ SY+L + +S+D+A +A+++ Sbjct: 393 SDDQVTKVVFDAKRTKVMLDYLGIDFAGVVDDVLIGSYLLHARDNSNDLAEVAREFDMDD 452 Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572 LSY K K +P + + EH ++I +L +RP+L ++ +Y+++ Sbjct: 453 LSYDEAIYGKGAKRGVPEEA---ETMYEHIARKVHIIARLQETIRPQLEANQMDDLYQKI 509 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 + P+ V++ +EI GI +D+ L + AE + + LE +I+ +G +FN++SPKQLG I Sbjct: 510 ELPLALVLANLEILGISVDKQQLVTMQAEFKEIIAGLEADIWKEAGHEFNVNSPKQLGVI 569 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 LF ++ P KTKTG +TAQD+ + G PII IL +RQL+K++STY + L I Sbjct: 570 LFEEMGLPVIKKTKTGY--STAQDVLEKLAGQAPIIDLILNYRQLNKLQSTYVEGLQEFI 627 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYS 751 ++ ++H+ + T TGRL+S +PNLQNIPI+++ G+ IR+AF+ +I S+DYS Sbjct: 628 HEDG-KIHSRFQQTLTSTGRLSSADPNLQNIPIRSEEGRSIRKAFVPSHEDWVIFSSDYS 686 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELR+LAHI+ + + F N DIH A +++ V E+V+ MRR+AK +NF I+YG Sbjct: 687 QIELRVLAHISGDKHMQEAFNNHEDIHTSTAMKVYNVPKEEVTSNMRRNAKAVNFGIVYG 746 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 IS + L+ L I R EA ++I Y +PG+ Y++ +++GYVET+F RR + + Sbjct: 747 ISDYGLSQNLNISRPEAKNFIDTYLENYPGVQAYMKDVVEKAKEDGYVETLFNRRRYLPD 806 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 + + ++R+ ER A+N PIQG+AADI + AM+ + ++L++HKL +LLQIHDELVFE Sbjct: 807 LKAKNFNVRSFAERNAMNTPIQGTAADIIKIAMVKMDEALKEHKLKANLLLQIHDELVFE 866 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 VP++EI T +++ M A L VPL++ W E Sbjct: 867 VPKDEIETLEKLVTEIMGSAA----QLDVPLEIESNYGATWYE 905 Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 98/294 (33%), Positives = 151/294 (51%), Gaps = 12/294 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L L DGSS +R+F+A + +G+ NA+ F M+ +L+ + +H V Sbjct: 23 LVLFDGSSLAFRSFFAIQNIDSFVNKNGMHTNALFAFHEMMNNILEKEQ----PTHALVA 78 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 +D TFRNE + +YK R P Q+P + AFG+ ++ +EADDII T Sbjct: 79 WDAGKTTFRNEFFDEYKGGRQSTPSEFREQMPFFNVLLDAFGVAHYDLTNYEADDIIGTL 138 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 E F V +IS DKDL QL + D K+ ++ +++ GI PE++ Sbjct: 139 AAKVAPEEFDVVVISGDKDLTQLARDNVRV-DITKKGVSELASYTPASIMEDMGITPEQI 197 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GDS DN PG+ GIG KTA LL EYG++E + +K+ KR+EN++ + Sbjct: 198 IDMKGLMGDSSDNYPGVSGIGEKTALKLLHEYGSMEAMYEQIDDMKKSKRKENLINEKDN 257 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 A LS+KL + D P+ I L L + L+SF K + F ++R+ D Sbjct: 258 AILSKKLARIELDAPVKIELSDLSYKGKQLEPLMSFYKDMNFNGFMSRLLENSD 311 >gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis] Length = 932 Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 197/531 (37%), Positives = 320/531 (60%), Gaps = 29/531 (5%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507 I + K F+ +E K+ +++K L+ + + ++G + D ++ +Y+LD +++ +A Sbjct: 414 IFAEAKPFWSSEKHRKLFYDVKSLWLLARQEDVEIQGIDGDGLIGAYLLDPLANNYSLAR 473 Query: 508 IAQKWLSY-----TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 +A + + + K++L + +++ + + L + KL Sbjct: 474 LAHELIDWKISPEAGKQVLPAEDAALAVAGL----------------FHLTPAMEAKLGE 517 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 E L +Y ++ P+ ++ ME GI+++ +L+ ++ E++ ++ L+ I++L+GE FN Sbjct: 518 ESLGKLYRDVELPLAPILGSMEWIGIKVNPKVLQDMAGELNSDIQKLQAEIHELAGETFN 577 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 ++S +Q G ILF KL P +TKTG + T + LE+++ +PI+ +LE+RQL K+KS Sbjct: 578 INSTQQFGKILFEKLGLPVIKRTKTG-YSTDVEVLEELS-DRHPIVPKVLEFRQLMKLKS 635 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-P 741 TY + L I+ R+HT ++ + T TGRL+S EPNLQNIP++ + G+ IR+AFI+P P Sbjct: 636 TYVEGLLPLIDGPEGRIHTSFNQSVTATGRLSSTEPNLQNIPVRLEQGRHIRKAFIAPEP 695 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 L++ADYSQIELRILAH++ F + DIH A+E+F V + V+ +MRR A Sbjct: 696 GWTLLAADYSQIELRILAHLSDDPSFKDAFAKNQDIHTRTASEVFDVPMGNVTREMRRRA 755 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +NF I+YGIS F L+ L + R EA +YI+ YF R+ G+ YI++ RQ G+V T Sbjct: 756 KAVNFGIVYGISDFGLSRDLGVTRGEAKEYIEGYFRRYHGVRGYIDRIIAEARQQGFVTT 815 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 + GRR ++ +N ER A+N PIQG+AADI + AM+ + K+L+DH L T+ML Sbjct: 816 LLGRRRRLPDLFVKNKIRQNFGERTAMNTPIQGTAADIIKAAMVKIPKALKDHGLKTRML 875 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LQ+HDEL+FEVPEEE+T + +I MEK I + VPL V++K NW Sbjct: 876 LQVHDELIFEVPEEELTVVAPLIKRIMEKT----IEISVPLTVDVKKGANW 922 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 121/366 (33%), Positives = 189/366 (51%), Gaps = 14/366 (3%) Query: 4 ENHLFLV-DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 +N +F+V DGSS ++RAFYA P +S G+P NA+ GF M +L R+E + A Sbjct: 10 KNSVFMVIDGSSLLHRAFYALPPMSSSQ-GVPTNAVYGFLTMFERL----RREYQPEYLA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V D TFR + + YKA R P+ L PQ L++ A I E +GFEADDII Sbjct: 65 VCLDKSRTTFRTQTFEGYKAQRGATPDDLRPQFGLLKEVMAAHDIGVYEQEGFEADDIIG 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178 T + +A+++G I++ D+D QL+SP + T K E+ D E + +K G+ P++ Sbjct: 125 TLSCLAKEKGIYTLIVTGDRDAWQLISPGVEVLLTRKGISEVERYDEEALKEKVGLSPKQ 184 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ L+ L GD+ DNIPG+PG+G KTA LL+++G +E + +K K +E ++ + E Sbjct: 185 IIDLKGLMGDTSDNIPGVPGVGEKTALKLLEQFGTMETLYDRVEEVK-GKLKEKLVTHKE 243 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS+KL + D+ I I E L + L LEF L+ + ++A Sbjct: 244 QAFLSKKLATIVCDMDIAIDWESLKRMQADPAVLRKLYTDLEFRSLLKNLPLPEGEESAE 303 Query: 299 IEPVVLDINTTENKG--IAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 + N NK +A + + D +I + L+ K+ E ++ E L Sbjct: 304 AVLFAKEGNEPPNKQAVLAKGSTKETDGSIDVQVDAPLNVSYQKVEDEGQRDEMLAE-LM 362 Query: 357 KLSQYP 362 +L Q P Sbjct: 363 RLGQEP 368 >gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct] gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct] Length = 829 Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+ + +D ML++Y+LD ++ + +A+++ +E Sbjct: 359 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 398 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A + + LW L + E+LL +Y +++P+ V++ ME TG+++D L+ Sbjct: 399 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 455 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656 +S E+++ + LE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 456 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 515 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++ +T TGRL+S Sbjct: 516 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 574 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IRRAFI+ L++ DYSQIELR+LAH++ L +VF+ D Sbjct: 575 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 634 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+ +FGV E V P MRR AKTINF ++YG+S RL+ +L IP EA +I+RYF Sbjct: 635 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 694 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IEKT R+ GYVET+FGRR + ++ + S+R ER A N P+QG+A Sbjct: 695 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 754 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + LE+ + +MLLQ+HDELV E P+E +++ ME P Sbjct: 755 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 809 Query: 957 NLRVPLKVNIKVSNNW 972 L VPL+V + + +W Sbjct: 810 -LAVPLEVEVGIGEDW 824 Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 30/296 (10%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L+ I Sbjct: 5 FEPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDAVI--- 60 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR+E Y YKA R PE QL L++ G+ +E+ G+EADD+ Sbjct: 61 --VVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDV 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIK 170 +A+ AEKEG+ V I++ DKDL QL+S ++I + H + + Sbjct: 119 LASLAKKAEKEGYEVRILTADKDLYQLLS-----------DRIHVLHPEGYLITPAWLWE 167 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K+G+ P++ +ALTGD DN+PG+ GIG KTA LL+E+G+LE +L N R+K R Sbjct: 168 KYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAI-R 226 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 E IL + + +LS L +RTD+P+ + D RL +FL+ LEF L++ Sbjct: 227 EKILAHMDDLKLSWDLAKVRTDLPLEVDFAKRREPDRE--RLRAFLERLEFGSLLH 280 >gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 538 Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+ + +D ML++Y+LD ++ + +A+++ +E Sbjct: 68 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 107 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A + + LW L + E+LL +Y +++P+ V++ ME TG+++D L+ Sbjct: 108 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 164 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656 +S E+++ + LE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 165 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 224 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++ +T TGRL+S Sbjct: 225 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 283 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IRRAFI+ L++ DYSQIELR+LAH++ L +VF+ D Sbjct: 284 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 343 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+ +FGV E V P MRR AKTINF ++YG+S RL+ +L IP EA +I+RYF Sbjct: 344 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 403 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IEKT R+ GYVET+FGRR + ++ + S+R ER A N P+QG+A Sbjct: 404 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 463 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + LE+ + +MLLQ+HDELV E P+E +++ ME P Sbjct: 464 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 518 Query: 957 NLRVPLKVNIKVSNNW 972 L VPL+V + + +W Sbjct: 519 -LAVPLEVEVGIGEDW 533 >gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+ + +D ML++Y+LD ++ + +A+++ +E Sbjct: 70 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 109 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A + + LW L + E+LL +Y +++P+ V++ ME TG+++D L+ Sbjct: 110 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 166 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656 +S E+++ + LE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 167 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 226 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++ +T TGRL+S Sbjct: 227 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 285 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IRRAFI+ L++ DYSQIELR+LAH++ L +VF+ D Sbjct: 286 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 345 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+ +FGV E V P MRR AKTINF ++YG+S RL+ +L IP EA +I+RYF Sbjct: 346 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 405 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IEKT R+ GYVET+FGRR + ++ + S+R ER A N P+QG+A Sbjct: 406 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 465 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + LE+ + +MLLQ+HDELV E P+E +++ ME P Sbjct: 466 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 520 Query: 957 NLRVPLKVNIKVSNNW 972 L VPL+V + + +W Sbjct: 521 -LAVPLEVEVGIGEDW 535 >gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I From T. Aquaticus Bound To A PrimerTEMPLATE DNA Length = 539 Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+ + +D ML++Y+LD ++ + +A+++ +E Sbjct: 69 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 108 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A + + LW L + E+LL +Y +++P+ V++ ME TG+++D L+ Sbjct: 109 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 165 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656 +S E+++ + LE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 166 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 225 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++ +T TGRL+S Sbjct: 226 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 284 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IRRAFI+ L++ DYSQIELR+LAH++ L +VF+ D Sbjct: 285 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 344 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+ +FGV E V P MRR AKTINF ++YG+S RL+ +L IP EA +I+RYF Sbjct: 345 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 404 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IEKT R+ GYVET+FGRR + ++ + S+R ER A N P+QG+A Sbjct: 405 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 464 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + LE+ + +MLLQ+HDELV E P+E +++ ME P Sbjct: 465 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 519 Query: 957 NLRVPLKVNIKVSNNW 972 L VPL+V + + +W Sbjct: 520 -LAVPLEVEVGIGEDW 534 >gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264] gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264] Length = 877 Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 196/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P ++ Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEV- 443 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 500 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 560 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 737 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI Q++ ME A Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 856 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 857 ----IELAVPLKVDYSYGPTW 873 Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 178/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E E Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ ++ + +I ++L FT L+N++ T + A A Sbjct: 237 ALMSKDLATIITDAPITVHVDDMVYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDITFDI 304 >gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] Length = 877 Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 233/672 (34%), Positives = 371/672 (55%), Gaps = 41/672 (6%) Query: 321 DRDTTIKTSQFSSLSDQTSKIN----SEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKD 376 +R+ + + + +S + IN E TP++ LE I + +++ + Sbjct: 227 NRNALLNNYEMAQMSKTLATINIQSPVEVTPEQCKLED--------IYTEDALEMIKRLE 278 Query: 377 IQQWVQKLETIGS-----ASFKIITDTMDA---FHSKPIAIAISTLDQKDDTSFKVETIF 428 + +Q+ ++ S FK I + DA F A I ++ +F V F Sbjct: 279 FKSMIQRFGSVTSTNDCEGGFKYINNPFDADPIFEQAKNADNIGVFIYRNKDNFGVSLCF 338 Query: 429 IDLSVHTSQDSTGKNTLTKE--ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 + +V+ GK E I+ ++ + L I NIK + +L Sbjct: 339 NNDNVYY----IGKEGFVTEDYIIEKVRDLVNAKAELTI-LNIKENNDILEN--DDAESI 391 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHA 542 DI + +Y+L+ ++++D IA+++L EI K++K+ P D+I ++ + ++A Sbjct: 392 FDISIAAYLLNPLQNTYDYDDIAREYLGMNVPAFDEIFPKTKKNETPSDEIPEN-ILKYA 450 Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 N+ V + L KL ++L +Y ++ P+ + ME GI + D LK+ + Sbjct: 451 CYNAYVAYKAKDALTEKLKETEMLDIYNNVEIPLTYALYDMEQAGIMVAGDKLKEYGERL 510 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + +LE++I+ +G +FN++SPKQLG+ILF +++ P G KTKTG + T+A LE++ Sbjct: 511 KTGIDALEKDIFAEAGHEFNINSPKQLGEILFGEMQLPGGKKTKTG-YSTSASVLEKLEP 569 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D P + ILE+RQL+K+KSTYAD L +I + R+H ++ T TGR++S EPNLQN Sbjct: 570 -DYPFVSKILEYRQLAKLKSTYADGLAVYIGE-DNRIHGKFNQTITATGRISSTEPNLQN 627 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++ LG++IR+ FI I ADYSQIELRILAH++ L + +S DIH A Sbjct: 628 IPVRMPLGREIRKVFIPKEGCVFIDADYSQIELRILAHMSDDKNLIDAYNHSKDIHAATA 687 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 + +F V +E+V+ + R +AK +NF I+YGIS F L+ L I R EA YIK YF +PGI Sbjct: 688 SLVFHVPLEEVTKEQRSNAKAVNFGIVYGISSFGLSNDLSISRKEAEQYIKDYFISYPGI 747 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y++ + ++ GY T+FGRR E+ S R ER A+N+PIQGSAADI + Sbjct: 748 KNYLDNSVKEAKEKGYSVTMFGRRRPIPELTSGNFMQRQFGERVAMNSPIQGSAADIMKI 807 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI+V K L++ L +K++LQ+HDEL+ E E E+ I+ +ME+A +L VPL Sbjct: 808 AMINVAKELKEKDLKSKIVLQVHDELLIEAYENEVEQVKDILKRNMEQAA----HLNVPL 863 Query: 963 KVNIKVSNNWQE 974 V+++V NNW E Sbjct: 864 DVDVQVGNNWDE 875 Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 110/327 (33%), Positives = 176/327 (53%), Gaps = 22/327 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+DG S + RAFY P+ + +GL NA+ GF N+++K++ + + + + AV FD Sbjct: 4 FVLIDGHSILNRAFYGVPIFTNS-EGLHTNAVFGFLNIMFKIIDSKQPD----YMAVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ DYK R + E L Q+P+++ Q I +E+ G+EADD+I T + Sbjct: 59 VHQPTFRHEMFKDYKGTRKPMMEELREQVPVIKELLQKMNITTVELPGYEADDVIGTLSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 EK G V +IS D+DL+QL S T C+ T K E+ + E V K + + P + + Sbjct: 119 KGEKAGMEVDVISGDRDLLQLASDHITICIPKTKKGQTTVEEYNTEGVRKLYKVTPTEFI 178 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++AL GDS DNIPG+PGIG K A ++ ++G++EN +A I + R +L E A Sbjct: 179 DVKALMGDSSDNIPGVPGIGEKGATAIISQFGSIENAYDHAEEISNTRNRNALLNNYEMA 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR---VATTYDCDAA 297 ++S+ L + P+ + E LED + +K LEF +I R V +T DC+ Sbjct: 239 QMSKTLATINIQSPVEVTPEQCKLEDIYTEDALEMIKRLEFKSMIQRFGSVTSTNDCEGG 298 Query: 298 --------NIEPVVLDINTTENKGIAI 316 + +P+ +N G+ I Sbjct: 299 FKYINNPFDADPIFEQAKNADNIGVFI 325 >gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 887 Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 209/527 (39%), Positives = 321/527 (60%), Gaps = 17/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 +K E+E K ++K + HR GI G + D++L SY++++ +S+D+ IA Sbjct: 367 IKHILEDEKIKKNVFDLKRTMVAAHRLGIHTHGLDYDMLLASYLINNENNSNDLGEIAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K + IP D D ++ H N I L L KL + Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKVNAIESLKKTLLEKLKDHEQDA 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ ++ P V+++ME+ G++++ L Q+ E + L LE+ IY +GEKFNL+SPK Sbjct: 484 LFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKKLEDKIYGQAGEKFNLNSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + L+Q+ +PI+ IL++RQ++KI+STY Sbjct: 544 QLGHILFEKLGLPVIKKTKTG-YSTSVEVLDQLKT-QSPIVSKILDYRQIAKIQSTYVKG 601 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + I + RVHT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P + Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 660 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTIN 805 S DYSQ+ELR+LAH++ + + F+ DIH A +IF + + ++V+P MRRHAK +N Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVN 720 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R A ++I YF ++P I +Y+ K R GY ETI R Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHR 780 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ K ++R ER AIN+PIQGSAADI + AMI++ K L++ L TKM++Q+H Sbjct: 781 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVH 840 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883 Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 122/331 (36%), Positives = 181/331 (54%), Gaps = 21/331 (6%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L S K DGL NAI F NML LL K+ +H V Sbjct: 6 LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y +YK R K PE LL Q+P ++ GI E++ +EADDII T Sbjct: 62 AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + EK GF TI++ D+DL QL S T + T K E EH+ + G+ P + Sbjct: 122 FAAKGEKAGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSKLEAYTPEHMKEVNGVTPSEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+ + +K+ KR+E ++ E Sbjct: 182 IDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRDKEK 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298 A L++KL + D P+T+ ++ + + + +L F + + F K + + A+ D+ Sbjct: 242 AFLAKKLATIDRDSPVTLDIDDIKRQPVDYEKLRQFYEKMNFRKFLADLNASGAGQDSTE 301 Query: 299 IEPV---------VLDINTTENKGIAIETEI 320 +E V V D+ TE I E+ Sbjct: 302 VEKVEYIVLNDDNVKDVKATEADTIEFYLEM 332 >gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 833 Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+ + +D ML++Y+LD ++ + +A+++ +E Sbjct: 363 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 402 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A + + LW L + E+LL +Y +++P+ V++ ME TG+++D L+ Sbjct: 403 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 459 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656 +S E+++ + LE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 460 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 519 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++ +T TGRL+S Sbjct: 520 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 578 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IRRAFI+ L++ DYSQIELR+LAH++ L +VF+ D Sbjct: 579 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 638 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+ +FGV E V P MRR AKTINF ++YG+S RL+ +L IP EA +I+RYF Sbjct: 639 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 698 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IEKT R+ GYVET+FGRR + ++ + S+R ER A N P+QG+A Sbjct: 699 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 758 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + LE+ + +MLLQ+HDELV E P+E +++ ME P Sbjct: 759 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 813 Query: 957 NLRVPLKVNIKVSNNW 972 L VPL+V + + +W Sbjct: 814 -LAVPLEVEVGIGEDW 828 Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 30/296 (10%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L+ I Sbjct: 9 FEPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDAVI--- 64 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR+E Y YKA R PE QL L++ G+ +E+ G+EADD+ Sbjct: 65 --VVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDV 122 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIK 170 +A+ AEKEG+ V I++ DKDL QL+S ++I + H + + Sbjct: 123 LASLAKKAEKEGYEVHILTADKDLYQLLS-----------DRIHVLHPEGYLITPAWLWE 171 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K+G+ P++ +ALTGD DN+PG+ GIG KTA LL+E+G+LE +L N R+K R Sbjct: 172 KYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAI-R 230 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 E IL + + +LS L +RTD+P+ + D RL +FL+ LEF L++ Sbjct: 231 EKILAHMDDLKLSWDLAKVRTDLPLEVDFAKRREPDRE--RLRAFLERLEFGSLLH 284 >gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+ + +D ML++Y+LD ++ + +A+++ +E Sbjct: 70 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 109 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A + + LW L + E+LL +Y +++P+ V++ ME TG+++D L+ Sbjct: 110 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 166 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656 +S E+++ + LE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 167 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 226 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++ +T TGRL+S Sbjct: 227 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 285 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IRRAFI+ L++ DYSQIELR+LAH++ L +VF+ D Sbjct: 286 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 345 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+ +FGV E V P MRR AKTINF ++YG+S RL+ +L IP EA +I+RYF Sbjct: 346 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 405 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IEKT R+ GYVET+FGRR + ++ + S+R ER A N P+QG+A Sbjct: 406 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 465 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + LE+ + +MLLQ+HDELV E P+E +++ ME P Sbjct: 466 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 520 Query: 957 NLRVPLKVNIKVSNNW 972 L VPL+V + + +W Sbjct: 521 -LAVPLEVEVGIGEDW 535 >gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196] gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196] Length = 891 Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 200/528 (37%), Positives = 320/528 (60%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K++ N K + K + L G+ ++G + D+++ +Y+LD + D ++A+ Sbjct: 372 FKEWLANGEMRKHTFDAKRAIVALKWKGVDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 431 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P ++ V EH +V+ + +L + Sbjct: 432 KETHAVKSDEEVYGKGAKRAVPGLEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 487 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V++ ME+ G+++D D L+ + E++ L +E+ IY L+G +FN++SPK Sbjct: 488 LFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 547 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II NIL +RQL K+ STY + Sbjct: 548 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MDRHEIIPNILHYRQLGKLNSTYIEG 605 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+++ Sbjct: 606 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 663 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIAK L + F++ +DIH A ++FGV ++V+ MRR AK + Sbjct: 664 MYAADYSQIELRVLAHIAKDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 723 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R AA++I++Y FPG+ EY+++ +Q GYV T+ Sbjct: 724 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLN 783 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQGSAADI ++AMI + LE+ L ++LLQ+ Sbjct: 784 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 843 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE P+EEI +++ ME A I L VPLKV+ W Sbjct: 844 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 887 Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 111/308 (36%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y DYK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREVLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++GF V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++ +E + N ++ KK +E + E Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKLEANKEQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S++L + TD PIT+ ++ + + LI + L FT L+N++ T + A A Sbjct: 251 ALMSKELATIITDAPITVHVDDMEYKGYETSDLIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] Length = 871 Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 202/525 (38%), Positives = 321/525 (61%), Gaps = 26/525 (4%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI 508 L+ L+ F E+E K+ H+ K L++Y I ++GF+ D + +Y++DS ++++++ + Sbjct: 367 LNLLRTFMEDETVKKVIHDSKNLITFLNKYDIDIQGFDFDTAIAAYLIDSSKANYEVFDL 426 Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 ++L K+I + S + I S ++ +L+ L+ L E + + Sbjct: 427 INRFL---EKDI---KSDSNDLKAICSSYLK-----------KLYEKLKEMLHKEDMDEL 469 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 Y +++ P+I V+S ME G +I++D L+++ + + + E+ IY+L+ E+FN+SSPKQ Sbjct: 470 YYKVEHPLIYVLSSMESIGFKINKDKLEELRVKFKEQIEKTEKEIYELADEEFNVSSPKQ 529 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LG ILF KL P KTKTG + T + LE++ +PII ++ +RQ++KI STY + L Sbjct: 530 LGKILFEKLDLPVIKKTKTG-YSTNQEVLEKL-IDKHPIITKVMYYRQITKINSTYVEGL 587 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LIS 747 N I+ +H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI + LIS Sbjct: 588 KNVID-IDGCIHSNFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDSDDILIS 646 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 DYSQIELR+LAH+A + FE+ DIH A+E+F V +++V+ MR +AK +NF Sbjct: 647 CDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFG 706 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 I+YGIS F LA L+I + EAA+Y+ YF R+P I EY+ + ++ GYV TI RR Sbjct: 707 IVYGISDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNRRR 766 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 EI S ++ + ER A+NAPIQGSAADI + AM++V+ L + L ++++LQ+HDE Sbjct: 767 FIPEIKSSNKIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLREKNLNSELILQVHDE 826 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 L+ V ++E Q+++ MEKA I L V L V++K W Sbjct: 827 LILNVKKDEFDIVKQLVIEEMEKA----IKLNVALDVDLKYGYTW 867 Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 103/257 (40%), Positives = 148/257 (57%), Gaps = 9/257 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D +S + RAFYA P L+ DG+ NAI GF NML+K+ + E + FD Sbjct: 4 LLILDSNSLMNRAFYALPPLTN-DDGVNTNAIYGFTNMLFKM----KDEINPDNIIATFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFR++ Y +YKA R K+P L Q P+++ + GI EI GFEADDII T + Sbjct: 59 KKSPTFRHKEYSEYKAGRKKMPPELGEQFPIIKELLKYMGIKTFEIDGFEADDIIGTISK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCL 182 E+ V I++ DKD +QL S T + T V E I D + + ++ I P + + + Sbjct: 119 FGEENDMEVYIVTGDKDALQLASEKTKVVITKKGVTETAIYDYKAFMDEFEITPTQFIDV 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+PG+G KTA L++EYG+LE +L N I KK +EN+ E A Sbjct: 179 KGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSLEEVLKNIPEISGKKLKENLENNMEQAIF 238 Query: 243 SRKLVMLRTDVPITIPL 259 S+KL + +VP+ I L Sbjct: 239 SKKLATIMREVPLDINL 255 >gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq polymerase 1 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New Orientation For The Structure-Specific Nuclease Domain gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus] Length = 832 Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+ + +D ML++Y+LD ++ + +A+++ +E Sbjct: 362 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 401 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A + + LW L + E+LL +Y +++P+ V++ ME TG+++D L+ Sbjct: 402 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 458 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656 +S E+++ + LE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 459 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 518 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++ +T TGRL+S Sbjct: 519 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 577 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IRRAFI+ L++ DYSQIELR+LAH++ L +VF+ D Sbjct: 578 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 637 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+ +FGV E V P MRR AKTINF ++YG+S RL+ +L IP EA +I+RYF Sbjct: 638 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 697 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IEKT R+ GYVET+FGRR + ++ + S+R ER A N P+QG+A Sbjct: 698 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 757 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + LE+ + +MLLQ+HDELV E P+E +++ ME P Sbjct: 758 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 812 Query: 957 NLRVPLKVNIKVSNNW 972 L VPL+V + + +W Sbjct: 813 -LAVPLEVEVGIGEDW 827 Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 30/296 (10%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L+ I Sbjct: 8 FEPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDAVI--- 63 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR+E Y YKA R PE QL L++ G+ +E+ G+EADD+ Sbjct: 64 --VVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDV 121 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIK 170 +A+ AEKEG+ V I++ DKDL QL+S ++I + H + + Sbjct: 122 LASLAKKAEKEGYEVRILTADKDLYQLLS-----------DRIHVLHPEGYLITPAWLWE 170 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K+G+ P++ +ALTGD DN+PG+ GIG KTA LL+E+G+LE +L N R+K R Sbjct: 171 KYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAI-R 229 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 E IL + + +LS L +RTD+P+ + D RL +FL+ LEF L++ Sbjct: 230 EKILAHMDDLKLSWDLAKVRTDLPLEVDFAKRREPDRE--RLRAFLERLEFGSLLH 283 >gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1] gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1] Length = 910 Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 210/625 (33%), Positives = 338/625 (54%), Gaps = 19/625 (3%) Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 +++ ++ + T+ + ++L G T +++A ++ + I++ L + Sbjct: 289 LDDSAFQLLTTTEQLPTVCEELRAAGGLVIDTETTSLNALRAELVGISLCPLPAAATAAD 348 Query: 423 KVETI------FIDLSVHTSQDSTGKNTLT-KEILSYLKKFFENEHFLKIGHNIKYDKLV 475 + ++ + + S L + L + LK+GHN+KYD V Sbjct: 349 NSQPTPPPTAWYLPIGHRLADGSPAPGQLPLAAVQQQLAPLLGDPQLLKLGHNLKYDLQV 408 Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPID 531 L +G+ + D M+ SY++D GR SH + ++ + L + E+ + Sbjct: 409 LKSHGLELAAPLADSMIASYLIDPGRRSHKLDDLSSELLERQLTSFAEVSAGDRRPEAFA 468 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 + + ++ ++ LW L P+L L + ++ ++ ++++ME GI +D Sbjct: 469 YVEPAAACRYSCQDVVASRLLWELFAPQLQQLGLDSLLHEVEMALLPILARMERLGILVD 528 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK--TGQ 649 +L ++ E + L LE I +L+GE FN++SP+QLG++L+ +LK P G KTK TG Sbjct: 529 PAVLDELEREFGRELARLESKIAELAGESFNINSPRQLGEVLYERLKLPHGRKTKGKTG- 587 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T ++LE++ + + ++ R LSK+KSTY D L I+ RVHT ++ T Sbjct: 588 YSTDYRELERLAAYHD-LPAAVISHRNLSKLKSTYVDKLATLIDPADGRVHTTFNQTVTA 646 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S PNLQNIPI+T G+++R AF++ ++ADYSQI+LR+LAH + L + Sbjct: 647 TGRLSSSNPNLQNIPIRTPEGRRLRAAFVAAAGHLFLAADYSQIDLRVLAHYSGDPVLQE 706 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F + DIH AAEIF VN VS MRR AKTINF I+YG+S F LA QLR R EA Sbjct: 707 AFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVYGMSAFGLAEQLRCSRKEAQ 766 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 +I RYF + G+ ++++ R++G+V T+ RR EINS R ER AIN Sbjct: 767 TFIDRYFELYQGVLRFMQEIVEQARRDGWVGTLLNRRRPLPEINSGNKMRREFAERTAIN 826 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 PIQG+AADI + A I+ ++L + ++ LLQIHDEL+FEVP++E+ +I +ME Sbjct: 827 TPIQGTAADIIKLAAIACDRALREAGCRSEALLQIHDELIFEVPQDELAQVGPLIRQAME 886 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 + + L VPL VN+K N E Sbjct: 887 EV----MELAVPLTVNLKSGPNLSE 907 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/361 (35%), Positives = 201/361 (55%), Gaps = 21/361 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M+K ++L+DGS++I+RA++A TPL +R DGLP +AI GF L +++ +E A Sbjct: 1 MKKPPPVYLIDGSAYIHRAYHAITPLTNR--DGLPTHAIYGFTTTLLRVI----REGEAR 54 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV+FD FR+++YP YKANRP +PE L QLP ++ A+ I ++E +GFEADD Sbjct: 55 HLAVVFDARGPNFRHQLYPQYKANRPAMPEDLACQLPYIKEIVAAYRITSLEREGFEADD 114 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +IA G V I+S DKDL+QLV P +D + + +D V K+ +PP K+ Sbjct: 115 LIAAAGRRLAAAGHRVVIVSGDKDLLQLVGPNITFWDPMGDRLLDAAAVEAKYQLPPAKL 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GDS DNIPG+PG+G KTA L++E+G+L+ +L N ++ K R+ + ++ + Sbjct: 175 LDYFALIGDSSDNIPGVPGVGPKTAVKLIKEFGDLDQLLANLEQVSAPKLRQKLADHRDA 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A L+R+L+ L+ D+ I E + + +L L+F++L+ A + D + Sbjct: 235 ALLARELIRLKDDLEIPATPEEYRQPEPDRGKLRQLFSQLDFSRLLQSEAAAEELDDSAF 294 Query: 300 E--------PVVLDINTTENKGIAIETEID-----RDTTIKTSQFSSLSDQTSKINSEQT 346 + P V + G+ I+TE R + S + T+ NS+ T Sbjct: 295 QLLTTTEQLPTVCE-ELRAAGGLVIDTETTSLNALRAELVGISLCPLPAAATAADNSQPT 353 Query: 347 P 347 P Sbjct: 354 P 354 >gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1] Length = 832 Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 196/496 (39%), Positives = 302/496 (60%), Gaps = 31/496 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+ + +D ML++Y+LD ++ + +A+++ +E Sbjct: 362 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 401 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A + + LW L + E+LL +Y +++P+ V++ ME TG+++D L+ Sbjct: 402 AGERATLSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 458 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656 +S E+++ + LE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 459 LSLEVAEEIARLEAEVFRLAGHSFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 518 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++ +T TGRL+S Sbjct: 519 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 577 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IRRAFI+ L++ DYSQIELR+LAH++ L +VF+ D Sbjct: 578 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 637 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+ +FGV E V P MRR AKTINF ++YG+S RL+ +L IP EA +I RYF Sbjct: 638 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIGRYF 697 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IEKT R+ GYVET+FGRR + ++ + S+R ER A N P+QG+A Sbjct: 698 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 757 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + LE+ + +MLLQ+HDELV E P+E +++ ME P Sbjct: 758 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 812 Query: 957 NLRVPLKVNIKVSNNW 972 L VPL+V + + +W Sbjct: 813 -LAVPLEVEVGIGEDW 827 Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 107/296 (36%), Positives = 159/296 (53%), Gaps = 30/296 (10%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L+ I Sbjct: 8 FEPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDSVI--- 63 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR+E Y YKA R PE QL L++ G+ +E+ G+EADD+ Sbjct: 64 --VVFDAKAPSFRHEAYEGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDV 121 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIK 170 +A+ AEKEG+ V I++ DKDL QL+S ++I + H + + Sbjct: 122 LASLAKKAEKEGYEVRILTADKDLYQLLS-----------DRIHVLHPEGYLITPAWLWE 170 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K+G+ P++ +ALTGD DN+PG+ GIG KTA LL+E+G+LE +L N R++ R Sbjct: 171 KYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLERLLKNLDRLRPAI-R 229 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 E IL + + +LS L +RTD+P+ + D RL +FL+ LEF L++ Sbjct: 230 EKILAHMDDLKLSWDLAKVRTDLPLEVDFAKRREPDRE--RLRAFLERLEFGSLLH 283 >gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175] gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175] Length = 884 Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 200/535 (37%), Positives = 331/535 (61%), Gaps = 29/535 (5%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 KK+ + K + K K++ HR+G ++G + D+ L++Y++D+ +I+ +A++ Sbjct: 364 FKKWLSDASVEKHLFDTKAAKVLAHRFGFDLKGAKYDVSLLAYLVDTNDIVKEISDVARR 423 Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR-PKLIVEKL- 565 LS K K IP DK + N ++ +++ + + P+ ++++L Sbjct: 424 VDVTILSSDEAVYGKGVKIQIPEDK---------EVWNQHLAAKVFTIAKAPEKLLKRLE 474 Query: 566 ----LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 H+Y ++ P+ D++++MEI GI++D++ L ++ E + L +E+ IY+L+GE+F Sbjct: 475 ENEQTHLYWEMELPLSDILARMEIQGIRVDRERLVEMGVEFEERLKEIEQEIYELAGEEF 534 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 N++S KQLG ILF K+ P KTKTG +TA D+ + PI++ ILE+RQL+K+ Sbjct: 535 NINSTKQLGVILFEKMGLPVIKKTKTGY--STAVDVLEKLAHQAPIVELILEYRQLAKLN 592 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 STY + L +I + ++HT + T TGRL+S++PNLQNIPI+T G++IR AF+ Sbjct: 593 STYVEGLQAYI-QEDGKIHTRFIQNLTQTGRLSSVDPNLQNIPIRTKEGRRIRYAFLPEH 651 Query: 742 TK-KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRR 799 K++S+DYSQIELR+LAHIA + + F+N++DIH A +FG+ N + V+ +MRR Sbjct: 652 DDWKILSSDYSQIELRVLAHIAGDKHMIEAFKNNVDIHTNTAMRVFGISNPDDVTSEMRR 711 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK +NF I+YGIS + L+ L I R A ++I RY F G+ +++E R+ YV Sbjct: 712 QAKAVNFGIVYGISDYGLSQNLNISRKRAKEFIDRYLEEFQGVKDFMESIVKEAREKDYV 771 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 ET+F RR + +I+S ++R+ ER A+N+PIQGSAADI + AMI + + + + K Sbjct: 772 ETLFHRRRYLPDIHSSNFNLRSFAERTAMNSPIQGSAADILKMAMIELDREMRERKFKAN 831 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +LLQ+HDEL+FEVP++E+ + ++ ME A ++L+VPL+ + V +NW E Sbjct: 832 LLLQVHDELIFEVPQDELESLQSLVEGVMENA----VSLKVPLRADSNVGDNWFE 882 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 102/284 (35%), Positives = 157/284 (55%), Gaps = 10/284 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L LVDGSS +RAF++ L+R +GL NA+ F M +L + + +H V Sbjct: 6 LLLVDGSSLAFRAFFSILDLNRFKNSNGLHTNALYSFHRMFKSILDSEK----PTHVLVA 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 +D TFR E+Y DYK R K P + Q+P + A+GIP + +EADDII T Sbjct: 62 WDAGKTTFRTEMYADYKGGRSKTPGEFIEQMPYFNVLLDAWGIPHYRLNQYEADDIIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----VIKKWGIPPEKMV 180 E+ G+ V ++S DKDL+QL + T K +E+ + +K+G+ PE+++ Sbjct: 122 ARKGEEAGYEVVVLSGDKDLIQLADNNITVKITTKGVTELVEYTPEVIFEKYGLTPEQII 181 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++ L GDS DN PG+ +G KTA LLQE+G++E I + +K+ K +EN++ E A Sbjct: 182 DMKGLMGDSSDNYPGVTKVGEKTAVKLLQEFGSVEGIYEHVDEMKKSKLKENLINDKELA 241 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 LS+KL + + PI I LE + ++ + L+SF K + F Sbjct: 242 FLSKKLARINVESPIEITLEDTLRKEQDVDALMSFYKEMNFNSF 285 >gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550] gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550] Length = 891 Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 196/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P ++ Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEV- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI Q++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 178/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E E Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ ++ + +I ++L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMVYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|294617839|ref|ZP_06697450.1| DNA polymerase type I [Enterococcus faecium E1679] gi|291595912|gb|EFF27194.1| DNA polymerase type I [Enterococcus faecium E1679] Length = 881 Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 226/581 (38%), Positives = 330/581 (56%), Gaps = 40/581 (6%) Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462 FK E D++++ + G N T+EI+ KK FEN F Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENRAFHSWITDP 368 Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515 LK ++ K + L+RY +G + D++L +Y+LD+ S DI IA + + Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K K +P + + H I L L +L + ++ +++ P Sbjct: 429 DEAVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELP 485 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + ++++MEI+GI++D L+++ E S L +E+ IY+ +GE+FNL+SPKQLG ILF Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 K+ P KTKTG + T LEQ+ PI+++IL +RQ++KI+STY + L I + Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754 +VHT Y A T TGRL+S++PNLQNIPI+ D G+KIR+AF+ LI S+DYSQIE Sbjct: 603 DGKVHTRYVQALTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813 LR+LAHI+ L F DIH A +FG+ E V+P MRR AK +NF I+YGIS Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + L+ L I R A YI YF ++PG+ EY+E+ + GYVET++ RR + +IN Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S +IR+ ER AIN PIQGSAADI + AMI + K L++ L MLLQ+HDELVFEVP Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 842 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+E+ + +++ ME+A ++L VPL + W E Sbjct: 843 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 879 Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 163/293 (55%), Gaps = 12/293 (4%) Query: 4 ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +N L LVDG+S +RAF+A L R +GL NAI F M ++Q + +H Sbjct: 3 KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y +YK R K P Q+P +R G+ E+ +EADDI Sbjct: 59 VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175 I T +K+ F V ++S D+DL QL S + TVK E EHV +K+ G+ Sbjct: 119 IGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLT 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++++ ++ L GD+ DNIPG+ IG KTA LL++YG++E I + +KQ K +EN++ Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A LS+KL + T P+ + ++ L E N +L+ F K ++F + ++++ Sbjct: 239 DKEQAFLSKKLATINTSAPVDVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291 >gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus] Length = 832 Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 196/496 (39%), Positives = 303/496 (61%), Gaps = 31/496 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+ + +D ML++Y+LD ++ + +A+++ +E Sbjct: 362 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 401 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A + + LW L + E+LL +Y +++P+ V++ ME TG+++D L+ Sbjct: 402 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 458 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656 +S E+++ + LE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 459 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 518 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++ +T TGRL+S Sbjct: 519 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 577 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IRRAFI+ L++ DYSQIELR+LAH++ L +VF+ D Sbjct: 578 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 637 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+ +FGV E V P MRR AKTINF ++YG+S RL+ +L IP EA +I+RYF Sbjct: 638 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 697 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IEKT R+ GYVET+FGRR + ++ + S+R ER A N P+QG+A Sbjct: 698 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 757 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + LE+ + +MLLQ+HDELV E P+E +++ ME P Sbjct: 758 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 812 Query: 957 NLRVPLKVNIKVSNNW 972 L VPL+V + + +W Sbjct: 813 -LAVPLEVEVGIGEDW 827 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 109/293 (37%), Positives = 157/293 (53%), Gaps = 24/293 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L+ I Sbjct: 8 FEPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDAVI--- 63 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR+E Y YKA R PE QL L++ G+ +E+ G+EADD+ Sbjct: 64 --VVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDV 121 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWG 173 +A+ AEKEG+ V I++ DKDL QL+S P L I + +K+G Sbjct: 122 LASLAKKAEKEGYEVRILTADKDLYQLLSDRIHALHPEGYL--------ITPAWLWEKYG 173 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 + P++ +ALTGD DN+PG+ GIG KTA LL+E+G+LE +L N R+K RE I Sbjct: 174 LRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAI-REKI 232 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 L + + +LS L +RTD+P+ + D RL +FL+ LEF L++ Sbjct: 233 LAHMDDLKLSWDLAKVRTDLPLEVDFAKRREPDRE--RLRAFLERLEFGSLLH 283 >gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1] Length = 831 Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 184/411 (44%), Positives = 269/411 (65%), Gaps = 8/411 (1%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 EKLL +Y ++KP+ V++ ME TG+++D LK +S E+ L LEE +Y L+G FN Sbjct: 423 EKLLWLYREVEKPLSRVLAHMEATGVRLDVAYLKALSLEVEAELKRLEEEVYRLAGHPFN 482 Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 L+S QL +LF +LK P+ KT KTG+ T+A LE + +PI++ IL+ R+LSK+K Sbjct: 483 LNSRDQLERVLFDELKLPALGKTQKTGKRSTSAAVLEALREA-HPIVEKILQHRELSKLK 541 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 STY D LP ++ RT R+HT ++ +T TGRL+S +PNLQNIP++T LGQ+IR+AF++ Sbjct: 542 STYIDPLPGLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRKAFVAEE 601 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 L++ DYSQIELR+LAH++ L +VF DIH A+ +FGV +E V P+MRR A Sbjct: 602 GFLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTQTASWMFGVPLEAVDPRMRRAA 661 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 KT+NF ++YG+S RL+ +L IP EA +I+RYF FP + +IEKT RQ GYVET Sbjct: 662 KTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEGGRQRGYVET 721 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 +FGRR + ++N+ S+R ER A N P+QG+AAD+ + AM+ + L++ +ML Sbjct: 722 LFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLKE--TGARML 779 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LQ+HDEL+ E P++ + + ME P L VPL+V + + +W Sbjct: 780 LQVHDELLLEAPKDRAEAVAALAKEVME-GVYP---LAVPLEVEVGIGEDW 826 Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 109/286 (38%), Positives = 157/286 (54%), Gaps = 8/286 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L KE Sbjct: 5 FEPKGRILLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKAL----KEDGYKA 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR+E Y YKA R PE QL L++ G +E+ G+EADD+ Sbjct: 60 VFVVFDAKAPSFRHEAYEGYKAGRAPTPEDFPRQLALIKELVDLLGFARLEVPGYEADDV 119 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 +A+ AE EG+ V I++ D+DL QLVS + + I E + +K+G+ PE+ V Sbjct: 120 LASLAKKAEGEGYEVRILTADRDLYQLVSDRIAVLHP-EGHLITPEWLWEKYGLRPEQWV 178 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DN+PG+ GIG KTA LL+E+G+LEN+L N R+K + RE I + E Sbjct: 179 DFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPESVREKIRAHLEDL 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 RLS +L ++ D+P+ + D G R +FL+ LEF L++ Sbjct: 239 RLSLELSRVQADLPLEVDFAQGREPDREGLR--AFLERLEFGSLLH 282 >gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington] gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi] gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 872 Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 197/435 (45%), Positives = 275/435 (63%), Gaps = 10/435 (2%) Query: 544 ENSNVILQLWLLLRPKLIV---EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 E++ +++ L + L+ K +Y +D P ++ +ME GI++D + L Q+S Sbjct: 442 ESAKIVINFISLYKQTLLALQKNKAFRLYREIDLPTCFILDKMEKIGIKVDANYLHQLSD 501 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQ 659 E +L +EE I+ LSG KFN++S KQL +ILF K++ PSG KT + T A L++ Sbjct: 502 EFGTEILKIEEEIFALSGTKFNIASQKQLSEILFKKMQLPSGNTLAKTSSYSTKAGILKK 561 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 ++ I +L WRQL+K+K+TY DSLP IN T+R+HT + ST TGRL+S EPN Sbjct: 562 LSEDGYHIATLLLRWRQLTKLKNTYTDSLPKQINNITKRIHTTFLQTSTTTGRLSSQEPN 621 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIP ++ G KIR+AFI+ KLISADYSQIELRIL+HIA + L Q F N DIH Sbjct: 622 LQNIPTRSSDGNKIRQAFIAEDGYKLISADYSQIELRILSHIANVDVLKQAFINKEDIHT 681 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 A +IF + +++ + RR AK INF IIYGIS F LA QL + AA+YIK+YF + Sbjct: 682 QTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNGTAAEYIKQYFAEY 741 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 G+ EY+ +TK + +NGYV FGR+ I+ K ++ ERAAINAPIQG++ADI Sbjct: 742 KGMQEYMVQTKAYANRNGYVTNFFGRKCFIPLIHDKK--LKQFAERAAINAPIQGTSADI 799 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + AMI + + +E KL T+++LQIHDEL+FEVPE E+ II ME + N+ Sbjct: 800 IKIAMIKLAQEIEKRKLKTRLILQIHDELLFEVPEIELELVIPIIKKIMEYST----NID 855 Query: 960 VPLKVNIKVSNNWQE 974 VP+ I+ NNW+E Sbjct: 856 VPIITEIRAGNNWKE 870 Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/321 (39%), Positives = 186/321 (57%), Gaps = 6/321 (1%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M K+N L L+DG F++RA+YA LS G PV A+ GF +ML KLL + + + + Sbjct: 1 MTKKNTLLLIDGYGFVFRAYYAQQSLSSAK-GEPVGALYGFTSMLLKLLSDFKPQ----Y 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A++FD FR++IY +YKANRP PE L+ QLPL+R +E G+EADDI Sbjct: 56 GAIVFDSGGKNFRHKIYQNYKANRPTPPEDLIGQLPLIRDVASHLNFAILEKNGYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IAT+ G V IIS+DKDL+QL+S +YD +K + I + VI K+G P+K+ Sbjct: 116 IATFATKTITLGKEVIIISSDKDLLQLMSKNIKIYDPIKCKYITEDDVIIKFGTTPDKLR 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + AL GD DNIPG+P IG KTA+ L+ ++G++ENI + +I K+R+ + E A Sbjct: 176 EVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQISSIKQRKTLQNSREAA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +S +L+ L ++V + L +L N +LI FL+ F L RV + + E Sbjct: 236 LISWRLIGLDSNVDLDFNLNNLEWSHPNSEKLIGFLQKYGFKSLYKRVENLFYIKINDHE 295 Query: 301 PVVLDINTTENKGIAIETEID 321 +V D TE K I+ +E++ Sbjct: 296 EIV-DNKVTEAKEISNASELE 315 >gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 872 Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 221/553 (39%), Positives = 337/553 (60%), Gaps = 38/553 (6%) Query: 439 STGKNTLTKEILSY--LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSY 494 S GK+T+ ++ LK+ FE E F H IK D LV Y GI + + D +M+Y Sbjct: 335 SFGKDTVYIDVFQTEDLKEIFEKEDFEFTTHEIK-DFLVRLSYKGIECKSKYIDTAVMAY 393 Query: 495 VLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551 +L+ S++D+ + +K+L + + I + I++I ++ + ++ + Sbjct: 394 LLNPSESNYDLDRVLKKYLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICSRCVYLFD 453 Query: 552 LWLLLRPKLIVEKLLHVYERLDK---------PMIDVVSQMEITGIQIDQDLLKQVSAEI 602 L EKL++ E +D P+++V+ ME++G +D+++LK++S +I Sbjct: 454 LK---------EKLMNFIEEMDMKKLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKI 504 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + + + IY +G +FN++SPKQL + LF KL P KTKTG + T ++ LEQ+ Sbjct: 505 DDRIGEILDKIYKEAGYQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVLEQL-V 562 Query: 663 GDNPIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 N I+ +I+E+RQL+K+KSTY D LP + RVH+ + T TGR++S EPNLQ Sbjct: 563 PYNDIVSDIIEYRQLTKLKSTYIDGFLP--LMDENNRVHSNFKQMVTATGRISSTEPNLQ 620 Query: 722 NIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 NIPI+ + G++IRRAFI P ++ ++SADYSQIELR+LAH++ L + F N+ DIH Sbjct: 621 NIPIREEFGRQIRRAFI-PRSRDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHL 679 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 A+E+F V +EKV+P+MRR AK +NF IIYGIS + L+ L+I R EA +YI YF R+ Sbjct: 680 RTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERY 739 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 G+ +YIEK F ++NGYV TI RR + EINS + R+ ER A+NAPIQGSAADI Sbjct: 740 KGVKDYIEKIVRFAKENGYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADI 799 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + AM+ V+ L+ KL +K++LQ+HDELV + ++E+ +I+ +ME + L+ Sbjct: 800 IKMAMVKVYNDLKKLKLKSKLILQVHDELVVDTYKDEVDIIKKILKENMENV----VQLK 855 Query: 960 VPLKVNIKVSNNW 972 VPL V I V NW Sbjct: 856 VPLVVEIGVGPNW 868 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 110/286 (38%), Positives = 177/286 (61%), Gaps = 10/286 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DGSS +YRA+YA P+L+ +GLP NA+ GF ML KL++ + + IA + FD Sbjct: 4 FLIIDGSSLMYRAYYALPMLT-TSEGLPTNALYGFTMMLIKLIEEEKPDYIA----IAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y DYKA R +PE L Q+ ++ F I +E++G+EADDII T + Sbjct: 59 KKAPTFRHKEYQDYKATRQAMPEELAEQVDYLKEIIDGFNIKTLELEGYEADDIIGTISK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 +AE++G V +++ D+D +QLVS + + K E+ D + +++++GI P++ + L Sbjct: 119 LAEEKGMEVLVVTGDRDALQLVSDKVKIKISKKGITQMEEFDEKAILERYGITPQQFIDL 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+P IG KTA LL+++G +EN++ N S++K K +ENI E A + Sbjct: 179 KGLMGDKSDNIPGVPNIGEKTAIKLLKDFGTIENLIQNLSQLKG-KIKENIENNKELAIM 237 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 S++L ++ D+PI I E ++ N +L+ LEF LI+ + Sbjct: 238 SKRLATIKRDIPIEIDFEEYKVKKFNEEKLLELFNKLEFFSLIDNI 283 >gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603] gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603] Length = 838 Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 199/528 (37%), Positives = 316/528 (59%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K++ N K + K + L G+ ++G + D+++ +Y+LD + D ++A+ Sbjct: 319 FKEWLANGEMRKHTFDAKRAIVALKWKGVDIQGIDFDLLIAAYLLDPADTDKDFRAVAKM 378 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P ++ V EH +V+ + + +L + Sbjct: 379 KETHAVKSDEEVYGKGAKRAVPEQEV----VAEHVARKVHVLYDVKQIFEEELEKNEQYE 434 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V++ ME+ G+ +D + L+ + E++ L +E+ IY+L+G +FN++SPK Sbjct: 435 LFTELELPLARVLADMEVKGVTVDTERLRNMGEELAGRLKEMEQEIYELAGTEFNINSPK 494 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II IL +RQL K+ STY + Sbjct: 495 QLGVILFENLNLPVLKKTKTG-YSTSADVLDKL-MDHHAIIPKILHYRQLGKLNSTYIEG 552 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L ++ + ++HT ++ T TGRL+S EPNLQNIPI+ + G+KIR+AFI P+++ Sbjct: 553 LLKVVHDDSSKIHTRFNQVLTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFI--PSEEGWI 610 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIAK L + F++ +DIH A ++FGV ++V+ MRR AK + Sbjct: 611 MYAADYSQIELRVLAHIAKDEGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 670 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R A ++I+RY FPG+ EY+ +Q GYV T+ Sbjct: 671 NFGIVYGISDYGLSQNLGITRKAAGEFIERYLESFPGVQEYMADIVKDAKQKGYVSTLLN 730 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQGSAADI ++AMI + LE+ L ++LLQ+ Sbjct: 731 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 790 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE P+EE+ +++ ME A I L VPLKV+ W Sbjct: 791 HDELIFEAPKEEVEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 834 Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 92/268 (34%), Positives = 150/268 (55%), Gaps = 9/268 (3%) Query: 44 MLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQ 103 ML ++L+ + +H V FD TFR++ Y DYK R K P L Q P +R Sbjct: 2 MLMRILEEEK----PTHMLVAFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREVLD 57 Query: 104 AFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVK 159 AF +P E++ +EADDI+ T A ++GF V +IS DKDL+QLVS T C+ + Sbjct: 58 AFNVPRYELENYEADDIMGTLAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITE 117 Query: 160 EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILI 219 ++ E + +K+ + P++++ ++ L GD DNIPG+PG+G KTA LL ++ +E + Sbjct: 118 VDEYTKEALFEKYSLSPKQIIDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYE 177 Query: 220 NASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKAL 279 N ++ KK +E + E A +S++L + TD PIT+ ++ + + LI + L Sbjct: 178 NLDQVSGKKLKEKLEANKEQALMSKELATIITDAPITVHVDDMEYKGYEPSDLIPMFENL 237 Query: 280 EFTKLINRVATTYDCDA-ANIEPVVLDI 306 FT L+N++ T + A A ++ + DI Sbjct: 238 GFTSLLNKLGVTPEETAPAELDDITFDI 265 >gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 872 Score = 361 bits (926), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 219/537 (40%), Positives = 330/537 (61%), Gaps = 36/537 (6%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ 510 LK+ FE E F H IK D LV Y GI + + D +M+Y+L+ S++D+ + + Sbjct: 351 LKEIFEKEKFEFTTHEIK-DFLVKLSYKGIECKSKYMDTAIMAYLLNPSESNYDLDRVLK 409 Query: 511 KWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 K+L + +E+ + +++I + + ++ + L EKL++ Sbjct: 410 KYLKVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLR---------EKLMN 460 Query: 568 VYERLDK---------PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 E +D P+++V+ ME++G +D+++LK++S +I+ + + + IY +G Sbjct: 461 FIEEMDMKRLLLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAG 520 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 +FN++SPKQL + LF KL P KTKTG + T ++ LEQ+ N I+ +I+E+RQL+ Sbjct: 521 YQFNVNSPKQLSEFLFEKLNLPVIKKTKTG-YSTDSEVLEQL-VPYNNIVNDIIEYRQLT 578 Query: 679 KIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 K+KSTY + LP + RVH+ + T TGR++S EPNLQNIPI+ + G++IRRAF Sbjct: 579 KLKSTYINGFLP--LMDENNRVHSNFKQMVTSTGRISSTEPNLQNIPIREEFGRQIRRAF 636 Query: 738 ISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 I P TK ++SADYSQIELR+LAH++ L + F N+ DIH A+E+F V +EKV+P Sbjct: 637 I-PRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTP 695 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 +MRR AK +NF IIYGIS + L+ L+I R EA +YI YF R+ G+ EYIEK F ++ Sbjct: 696 EMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKE 755 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 NGYV TI RR + EINS + R+ ER A+NAPIQGSAADI + AM+ V+ LE K Sbjct: 756 NGYVITIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVRVYNDLEKLK 815 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 L +K++LQ+HDELV + ++E+ +I+ +ME + L+VPL V I V NW Sbjct: 816 LKSKLILQVHDELVVDTYKDEVEIVKKILKDNMENV----VQLKVPLVVEIGVGPNW 868 Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 114/296 (38%), Positives = 179/296 (60%), Gaps = 10/296 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DGSS +YRA+YA P+L+ +GL NA+ GF ML KL++ + + I A+ FD Sbjct: 4 FLVIDGSSLMYRAYYALPMLT-TSEGLHTNALYGFTMMLIKLIEEEKPDYI----AIAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y DYKA R +PE L Q+ L++ + F I +E++G+EADDII T + Sbjct: 59 KKAPTFRHKEYQDYKATRQAMPEELAEQVDLLKEIIEGFNIKILELEGYEADDIIGTISK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 +AE++ V +++ D+D +QLVS + + K E+ D + V++++ I P + + L Sbjct: 119 LAEEKEMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEEFDEKAVLERYEITPHQFIDL 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPGIP IG KTA LL+++G +EN+L N S++K K +ENI E A + Sbjct: 179 KGLMGDKSDNIPGIPNIGEKTAIKLLKDFGTIENLLQNLSQLKG-KIKENIENNKELAIM 237 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 S+KL ++ D+PI I E ++D N +L+ LEF LI+ + + + N Sbjct: 238 SKKLATIKRDIPIEIDFEEYRVKDFNEEKLLELFNKLEFFSLIDSIKKKNNVEIVN 293 >gi|229916392|ref|YP_002885038.1| DNA polymerase I [Exiguobacterium sp. AT1b] gi|229467821|gb|ACQ69593.1| DNA polymerase I [Exiguobacterium sp. AT1b] Length = 864 Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 213/578 (36%), Positives = 346/578 (59%), Gaps = 23/578 (3%) Query: 401 AFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENE 460 A + ++ A+ L+Q D F+ + I + ++ + G TL ++ +K++ E+E Sbjct: 300 ALVDQDLSRAVLMLEQLHDDYFEEDVIGVAIASERGV-TIGDVTLLED--ERVKEWIEDE 356 Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTRKE 519 I + K + L R+ +++RG+ED+++ Y+L+ SG +S ++SIA + +Y +E Sbjct: 357 TKTTICLDAKQTIIQLKRHQLALRGYEDLLVAGYLLNLSGGTS--LSSIAAHF-TYPLEE 413 Query: 520 ----ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K K +P + + H E + I L+ + +L + +YE L+KP Sbjct: 414 DETVYGKGAKIKVPEENV----FHAHLAEKAYAIYTLFERVVSELKENEQTELYEALEKP 469 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 ++ V+++ME GI ++ + L+ + ++ + L +LE I++L+GE FN++SPKQLG +LF Sbjct: 470 LVSVLAEMEWAGIHVNVETLQHMETDLRERLNALEITIHELAGEPFNINSPKQLGVVLFE 529 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 KL P KTKTG + T A LE++ +PII+ I+ +R+L K++STY + L + K Sbjct: 530 KLSLPPVKKTKTG-YSTAADVLEKL-APLHPIIEKIMHYRELGKLQSTYVEGL-QKVVKD 586 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIE 754 ++HT Y+ T TGRL+S+ PNLQNIPI+ + G++IR+AF S P L + DYSQIE Sbjct: 587 DGKIHTRYTQTLTQTGRLSSVNPNLQNIPIRLEEGRRIRKAFTASEPGWVLYAVDYSQIE 646 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LRI+AH+++ + F + DIH AA +F V+ E+V+ MRR AK +NF IIYGIS Sbjct: 647 LRIMAHMSQDEKMMAAFLHDEDIHTSTAANVFKVSAEEVTSLMRRQAKAVNFGIIYGISD 706 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 + L+ L I R EA +I YF +FPG+ +++ R++G+VET+ RR + +I+S Sbjct: 707 YGLSQNLGITRKEAQTFIDTYFEQFPGVKTFMDAAIERAREHGFVETMLKRRRNIPDIHS 766 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 ++R ER AIN PIQG+AADI ++AMI V +L KL +K+LLQ+HDEL+FE P Sbjct: 767 RNFNLRGFAERTAINTPIQGTAADIIKKAMIDVDHALNASKLQSKLLLQVHDELIFEGPT 826 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EE+ +++ +ME+ + L VPL+ + V W Sbjct: 827 EEMEALEKLVTEAMEQT----VTLDVPLRADGAVGTTW 860 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 176/304 (57%), Gaps = 20/304 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L ++DG+S YRAF+A P +S G NA+ GF ML KL+++ + +HFAV Sbjct: 2 NKLLVLDGNSLTYRAFFALPPMS-DASGRNTNAVYGFTMMLLKLMEDEQ----PTHFAVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR++ + +YK R K P L Q PLVR +AFGI +E+ +EADDII T Sbjct: 57 FDASKKTFRHDTFAEYKGGRQKTPGELREQFPLVRDVCRAFGISVLELDQYEADDIIGT- 115 Query: 125 TYIAEKEGF-AVTIISTDKDLMQLVSPTTCLYDT---VKEEKIDIEHVIKKW--GIPPEK 178 +++ F VT+++ DKDL+QL++ +Y T + E + E K+ G+ P + Sbjct: 116 --LSKDPTFDQVTVVTGDKDLLQLINERVTVYLTKRGITEVEKMTETAFKERYDGLQPIQ 173 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 M+ L+ L GD DNIPGIPG+G KTA L+ YG +E + + +K K++E ++ + Sbjct: 174 MIDLKGLMGDKSDNIPGIPGVGEKTALKLIATYGTVEALYEHTDELK-GKQKEKVVANEQ 232 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A++S++L + TDVPI + ++ L+ + + + + L+F LI ++A D ++ Sbjct: 233 EAKMSKQLATIYTDVPIDVTMDELVFKPYDASVVKTLFMDLQFKSLIGKLA-----DTSS 287 Query: 299 IEPV 302 EPV Sbjct: 288 EEPV 291 >gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200] gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200] Length = 891 Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 196/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI ++G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P K+ Sbjct: 399 GIDIQGVDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI Q++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 168/292 (57%), Gaps = 9/292 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYDNLDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 A +S+ L + TD PIT+ ++ + + ++ ++L FT L+N++ T Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVVPMFESLGFTSLLNKLGVT 302 >gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] Length = 891 Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 196/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI ++G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P K+ Sbjct: 399 GIDIQGVDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI Q++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 176/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYDNLDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + ++ ++L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVVPMFESLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842] gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842] Length = 877 Score = 360 bits (925), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 196/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI ++G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P K+ Sbjct: 385 GIDIQGVDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 443 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 737 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI Q++ ME A Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 856 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 857 ----IELAVPLKVDYSYGPTW 873 Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 176/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYDNLDQVSGKKLKEKLEANKDQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + ++ ++L FT L+N++ T + A A Sbjct: 237 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVVPMFESLGFTSLLNKLGVTPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDITFDI 304 >gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13] Length = 877 Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 202/499 (40%), Positives = 313/499 (62%), Gaps = 16/499 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL-KSRKSSIPIDKIS 534 GI + G + D ++ SY+++ +S D+A IA+K Y T + + K K ++P Sbjct: 385 GIELNGIDFDFIIASYIVNPSETSTDLAEIARKKGYYQIETDEAVYGKGAKRAVP----D 440 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 +V +H + + + ++ +L + L ++E L+ P+ V+ +ME GI++D+ Sbjct: 441 QQKVADHLVRKTFAMQEMKESFIHELKDNEQLELFEELEMPLTLVLGEMEALGIKVDKAR 500 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+++ ++ + L +EE I+DL+GEKFN++SPKQLG ILF KL P KTKTG + T+A Sbjct: 501 LEEMGTDLGEKLEKIEEKIFDLAGEKFNINSPKQLGVILFEKLGLPPVKKTKTG-YSTSA 559 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE++ + +I+ IL +RQL K+KSTY + L I++ + ++HT ++ A T TGRL+ Sbjct: 560 DVLEKL-AEKHEVIQQILHYRQLGKLKSTYIEGLLKVIHEDSNKIHTRFNQALTQTGRLS 618 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFEN 773 S++PNLQNIP++ + G+KIR AFI +I +ADYSQIELR+LAHIA L + F+ Sbjct: 619 SIDPNLQNIPVRLEEGRKIREAFIPSHEDWVIFAADYSQIELRVLAHIANDEKLIEAFKE 678 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 DIH A ++F V+ ++V+ MRR AK +NF I+YGIS + L+ L I R +A +I Sbjct: 679 DADIHTKTAMDVFHVSEDEVTSNMRRQAKAVNFGIVYGISDYGLSQSLGITRKDAKTFID 738 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 RY FPG+ EY+E + + GYV T+ RR + EI S ++R+ ER A+N PIQ Sbjct: 739 RYLESFPGVKEYMEDSVLDAKDKGYVTTLLHRRRYLPEITSSNFNLRSFAERTAMNTPIQ 798 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 GSAADI ++AMI + LE+ + +K+LLQ+HDELVFE P++EI +I+ ME+A Sbjct: 799 GSAADIIKKAMIDMANRLEEENMKSKVLLQVHDELVFEAPKDEIEKLKKIVPEVMEQA-- 856 Query: 954 PKINLRVPLKVNIKVSNNW 972 + L+VPLKV+ + W Sbjct: 857 --VELKVPLKVDYSYGSTW 873 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 106/307 (34%), Positives = 175/307 (57%), Gaps = 11/307 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S YRAF+A PLLS + G+ NAI GF ML ++L+ + +H V Sbjct: 4 NKLVLIDGNSIAYRAFFALPLLSNEK-GIHTNAIYGFTMMLMRILEEEK----PTHMLVA 58 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR++ + +YK R K P L Q +R A+ I E+ +EADDII T Sbjct: 59 FDAGKTTFRHKTFGEYKGGRQKTPPELSEQFSFLRELLDAYNIKRYELPEYEADDIIGTL 118 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 A K+ + V IIS DKDL QL + + D K+ D++ + +K+G+ +++ Sbjct: 119 AQQAAKDDYEVKIISGDKDLTQLATDKITV-DITKKGITDVDSYTPAFIEEKYGLNVDQI 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GDS DNIPG+PG+G KTA LL+E+GN+E +L + ++ KK +E + + E Sbjct: 178 IDMKGLMGDSSDNIPGVPGVGEKTAIKLLKEFGNIETLLESIDQVSGKKLKEKLEDNKEQ 237 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A +S++L + T+ P+ + +E L+ E + +++ K L F L++++ + ++ Sbjct: 238 AIMSKQLATIMTEAPVEVTVEELLYEGFDKKKVVDIFKELSFNSLLDKLGEDGETVTEDL 297 Query: 300 EPVVLDI 306 E + +I Sbjct: 298 EDISFEI 304 >gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134] gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134] Length = 877 Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P ++ Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLEV- 443 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 500 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 560 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 737 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 856 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 857 ----IELAVPLKVDYSYGPTW 873 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E E Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I ++L FT L+N++ T + A A Sbjct: 237 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDITFDI 304 >gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] Length = 871 Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 199/525 (37%), Positives = 318/525 (60%), Gaps = 26/525 (4%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI 508 L+ L+ F E++ K+ H+ K L++Y I ++GF+ D + +Y++DS ++++++ + Sbjct: 367 LNLLRTFMEDKTVKKVIHDSKNLITFLNKYDIDIQGFDFDTAIAAYLIDSSKANYEVFDL 426 Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 ++L K K+ S+ + +L+ L+ +L E + + Sbjct: 427 INRFLEKDIKSDCDDLKAIC-----------------SSYLTKLYEKLKERLHKEDMDEL 469 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 Y +++ P+I V+S ME G +I++D L+++ + + + E+ IY+L+ E+FN+SSPKQ Sbjct: 470 YYKVEHPLIYVLSSMESIGFKINKDKLEELRIKFKEQIEKTEKEIYELADEEFNVSSPKQ 529 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LG ILF KL P KTKTG + T + LE++ +PII ++ +RQ++KI STY + L Sbjct: 530 LGKILFEKLDLPVIKKTKTG-YSTNQEVLEKL-IDKHPIITKVMYYRQITKINSTYVEGL 587 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LIS 747 N I+ +H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI + LIS Sbjct: 588 KNVID-IDGCIHSNFNQTVTTTGRLSSTEPNLQNIPIKYEMGKEIRKVFIPQDSDDILIS 646 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 DYSQIELR+LAH+A + FE+ DIH A+E+F V +++V+ MR +AK +NF Sbjct: 647 CDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNFG 706 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 I+YGIS F LA L+I + EAA+Y+ YF R+P I EY+ + ++ GYV TI RR Sbjct: 707 IVYGISDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNRRR 766 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 EI S ++ + ER A+NAPIQGSAADI + AM++V+ L + L ++++LQ+HDE Sbjct: 767 FIPEIKSSNKIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLREKNLNSELILQVHDE 826 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 L+ V ++E Q+++ MEKA I L V L V++K W Sbjct: 827 LILNVKKDEFDIVKQLVIEEMEKA----IKLNVALDVDLKYGYTW 867 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 102/257 (39%), Positives = 148/257 (57%), Gaps = 9/257 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D +S + RAFYA P L+ DG+ NAI GF NML+K+ + E + FD Sbjct: 4 LLILDSNSLMNRAFYALPPLTN-DDGVNTNAIYGFTNMLFKM----KDEINPDNIIATFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFR++ Y +YKA R K+P L Q P+++ + GI EI GFEADDII T + Sbjct: 59 KKSPTFRHKEYSEYKAGRKKMPPELGEQFPIIKELLKYMGIKTFEIDGFEADDIIGTISK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCL 182 E+ V I++ DKD +QL S T + T V E I D + + ++ I P + + + Sbjct: 119 FGEENDMEVYIVTGDKDALQLASEKTKVVITKKGVTETAIYDYKAFMDEFEITPTQFIDV 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+PG+G KTA L++EYG LE++L + I KK +EN+ E A Sbjct: 179 KGLMGDKSDNIPGVPGVGEKTAFKLIKEYGTLEDVLKHIPEISGKKLKENLENNMEQAIF 238 Query: 243 SRKLVMLRTDVPITIPL 259 S+KL + +VP+ I L Sbjct: 239 SKKLATIMREVPLDINL 255 >gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676] gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676] Length = 891 Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 196/501 (39%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI Q++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E E Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEKLEENKEQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I ++L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622] gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622] Length = 908 Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 201/534 (37%), Positives = 317/534 (59%), Gaps = 21/534 (3%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIA 509 + ++ E+ K GH++K LVL GI++ G +D+ L+SY+L+ R H + ++ Sbjct: 384 AAFREVLEDAAVKKGGHDLKALSLVLANDGITLHGAHDDVELLSYLLNPSRREHALVDLS 443 Query: 510 QKWLSY------TRKEILKSRKSSIPIDKISDSQVQEHAIENS---NVILQLWLLLRPKL 560 ++ L+ E + +K D + AI + +LW +L Sbjct: 444 RERLNTELPPLPPAAEGKRGKKDRALADHTVEEVATGFAIRAEAARRLAPELWK----EL 499 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 KL + ++ P++ +++QME G+ +D L + S ++ + + + +Y +G + Sbjct: 500 EAAKLAALARDMELPLLPLLAQMERRGVLLDTAELSRTSVKVDAAVEAQVKEVYRHAGRE 559 Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 FN+ S QL ++LFT+LK P + KTG + Q++ + ++P+ I+E+R LSK+ Sbjct: 560 FNIGSNPQLVEVLFTELKLPIIKRGKTG--PSADQEVLEKLSEEHPLPGAIIEYRSLSKL 617 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 KSTY D+LP + R+HT Y A+T TGRL+S +PNLQNIP++TDLG++IRRAF++ Sbjct: 618 KSTYLDTLPTLVAA-DGRIHTTYHQAATATGRLSSTDPNLQNIPVRTDLGREIRRAFVAA 676 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 +L+SADYSQ+ELR+LAHIA L + F + DIH AAE+FGV E+V + RR Sbjct: 677 EGHQLVSADYSQVELRLLAHIANDPVLIEAFLHDEDIHTRTAAEVFGVAKEQVDREQRRV 736 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 AK +NF I YG+SP L +L I + A D I+RYF R+ GI Y+E+T + R+ GYVE Sbjct: 737 AKMVNFGIAYGLSPHGLGARLGIAQDVARDIIERYFTRYAGIRRYLEETVDRARKTGYVE 796 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 T++GRR + ++NS + ERAAIN PIQG+AAD+ ++AM++V ++L KL T+M Sbjct: 797 TLYGRRRYMADLNSKNRGVAQAAERAAINMPIQGTAADLIKKAMLAVDEALTAQKLRTRM 856 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LLQ+HDEL+FE P+ E+ + V +M +L+VPLKV + +W + Sbjct: 857 LLQVHDELLFEAPDAEVEQVKALAVKAMSSVA----DLKVPLKVEVGAGRSWAD 906 Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 105/280 (37%), Positives = 160/280 (57%), Gaps = 5/280 (1%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+D S FI+RA++A P L+ G+ NA+ GF M+ K L +E +H A+ FD Sbjct: 13 LVLIDASGFIFRAYHAIPPLTTSK-GVQTNAVLGFTRMVLKAL----RELKPTHVALAFD 67 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + T R +I P YKANR PE L+PQ L+R +A +P +E+ G+EADD+I T Sbjct: 68 KESRTERQKIDPTYKANREGPPEDLVPQFALIRRVVEAINVPVLEVAGWEADDVIGTLAV 127 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A++EGF V +++ DKD +Q+V LYD +K+ V + GI P +M AL Sbjct: 128 KAKQEGFCVQVVTGDKDFVQIVDDDVRLYDPMKDVHTLPADVKARLGIEPGQMRDYLALI 187 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+P +PGIG KTA L+Q++G++E +L +K+ K RENI + E+ ++ L Sbjct: 188 GDAVDNVPKVPGIGPKTATELIQQFGDVETLLSRLDEVKKPKIRENIASHRESLLRAKVL 247 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 V +TD+ + + + L + R LEF L+ Sbjct: 248 VTFKTDLSLDVRMADLARRPVDAQRSRELFTELEFFALLK 287 >gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W] gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876] gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876] gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W] Length = 891 Score = 360 bits (924), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P ++ Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLEV- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E E Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I ++L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075] gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075] Length = 887 Score = 360 bits (924), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 209/527 (39%), Positives = 321/527 (60%), Gaps = 17/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 +K E+E K ++K + HR GI G + D++L SY++++ +S+D+ IA Sbjct: 367 IKHILEDEKIKKNVFDLKRSMVGAHRLGIHTHGLDYDMLLASYLVNNENNSNDLGEIAHL 426 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K + IP D D ++ H N I L L KL + Sbjct: 427 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKVNAIESLKKTLLEKLKDHEQDA 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ ++ P V+++ME+ G++++ L Q+ E + L LE+ IY +GEKFNL+SPK Sbjct: 484 LFDTIEIPTARVLARMEMNGMKVETSTLIQLQNEFAVKLKKLEDKIYGQAGEKFNLNSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T+ + L+Q+ +PI+ IL++RQ++KI+STY Sbjct: 544 QLGHILFEKLGLPVIKKTKTG-YSTSVEVLDQLKT-QSPIVSKILDYRQIAKIQSTYVKG 601 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + I + RVHT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P + Sbjct: 602 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 660 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTIN 805 S DYSQ+ELR+LAH++ + + F+ DIH A +IF + + ++V+P MRRHAK +N Sbjct: 661 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVN 720 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R A ++I YF ++P I +Y+ K R GY ETI R Sbjct: 721 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHR 780 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ K ++R ER AIN+PIQGSAADI + AMI++ K L++ L TKM++Q+H Sbjct: 781 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVH 840 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 841 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 883 Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 122/331 (36%), Positives = 181/331 (54%), Gaps = 21/331 (6%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L S K DGL NAI F NML LL K+ +H V Sbjct: 6 LLLIDGNSVAFRAFYALYRQLESFKSPDGLHTNAIYAFKNMLDVLL----KDVDPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD VTFR ++Y +YK R K PE LL Q+P ++ GI E++ +EADDII T Sbjct: 62 AFDAGKVTFRTKMYGEYKGGRAKTPEELLEQMPYIQEMLHDLGIKTYELKNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPEKM 179 + EK GF TI++ D+DL QL S T + T + E EH+ + G+ P + Sbjct: 122 FAAKGEKVGFTTTIVTGDRDLTQLASDKTTVEVTKSGVSQLEAYTPEHMKEVNGVTPSEF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DN PG+ GIG KTA+ L+QEYG++EN+ + +K+ KR+E ++ + Sbjct: 182 IDMKALMGDNSDNYPGVEGIGPKTASNLIQEYGSVENLYDHIDEMKKSKRKERLIRDKDK 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAAN 298 A L++KL + D P+TI ++ + E + +L F + + F K + + A+ D A Sbjct: 242 AFLAKKLATIDRDSPVTIDIDDVKREPVDYEKLRQFYEKMNFRKFLAELNASGAGQDGAE 301 Query: 299 IEPV---------VLDINTTENKGIAIETEI 320 +E V V D+ TE + E+ Sbjct: 302 VEKVEYTVLNDDNVKDVKATEKDTVEFYLEM 332 >gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43] Length = 877 Score = 360 bits (924), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 201/528 (38%), Positives = 316/528 (59%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K + N K + K + L GI M+G + D+++ +Y+LD + D ++A+ Sbjct: 358 FKAWLANGEMRKHTFDAKRAIVALKWNGIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKM 417 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P ++ V EH +V+ + +L + Sbjct: 418 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFVEELKKNEQYE 473 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V++ ME+ G+++D + L+ + E+ L +E+ IY L+G +FN++SPK Sbjct: 474 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELVGRLKEMEQEIYKLAGTEFNINSPK 533 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II NIL +RQL K+ STY + Sbjct: 534 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MDRHEIIPNILHYRQLGKLNSTYIEG 591 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+++ Sbjct: 592 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 649 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIA L + F++ +DIH A ++FGV ++V+ MRR AK + Sbjct: 650 MYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAV 709 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R AA++I++Y FPG+ EY+E +Q GYV T+ Sbjct: 710 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLN 769 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQG+AADI ++AMI + LE+ L ++LLQ+ Sbjct: 770 RRRYIPEITSRNFNLRSFAERTAMNTPIQGTAADIIKKAMIIMADRLEEEGLQARLLLQV 829 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE P+EEI Q++ ME A I L VPLKV+ W Sbjct: 830 HDELIFEAPKEEIEKLEQLVPEVMEHA----IELAVPLKVDYSYGPTW 873 Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E E Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEKLEENKEQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I ++L FT L+N++ T + A A Sbjct: 237 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDITFDI 304 >gi|257884459|ref|ZP_05664112.1| DNA polymerase A [Enterococcus faecium 1,231,501] gi|257820297|gb|EEV47445.1| DNA polymerase A [Enterococcus faecium 1,231,501] Length = 881 Score = 360 bits (924), Expect = 7e-97, Method: Compositional matrix adjust. Identities = 225/581 (38%), Positives = 330/581 (56%), Gaps = 40/581 (6%) Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462 FK E D++++ + G N T+EI+ KK FEN+ F Sbjct: 311 FKEEMFTTDMALYV--EMMGNNYHTEEIVGVAWGTEKKIYVTNDLSVFENQAFHSWITDP 368 Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515 LK ++ K + L+RY +G + D++L +Y+LD+ S DI IA + + Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K K +P + + H I L L +L + ++ +++ P Sbjct: 429 DETVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELP 485 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + ++++MEI+GI++D L+++ E S L +E+ IY+ +GE+FNL+SPKQLG ILF Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 K+ P KTKTG + T LEQ+ PI+++IL +RQ++KI+STY + L I + Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754 +VHT Y T TGRL+S++PNLQNIPI+ D G+KIR+AF+ LI S+DYSQIE Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813 LR+LAHI+ L F DIH A +FG+ E V+P MRR AK +NF I+YGIS Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + L+ L I R A YI YF ++PG+ EY+E+ + GYVET++ RR + +IN Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S +IR+ ER AIN PIQGSAADI + AMI + K L++ L MLLQ+HDELVFEVP Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 842 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+E+ + +++ ME+A ++L VPL + W E Sbjct: 843 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 879 Score = 184 bits (466), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 162/293 (55%), Gaps = 12/293 (4%) Query: 4 ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +N L LVDG+S +RAF+A L R +GL NAI F M ++Q + +H Sbjct: 3 KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y +YK R K P Q+P +R G+ E+ +EADDI Sbjct: 59 VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175 I T +K F V ++S D+DL QL S + TVK E EHV +K+ G+ Sbjct: 119 IGTLAEKVDKNQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLI 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++++ ++ L GD+ DNIPG+ IG KTA LL++YG++E I + +KQ K +EN++ Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A LS+KL + T P+ + ++ L E N +L+ F K ++F + ++++ Sbjct: 239 DKEQAFLSKKLATINTSAPVEVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291 >gi|328464768|gb|EGF36086.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463] Length = 650 Score = 360 bits (923), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 209/527 (39%), Positives = 320/527 (60%), Gaps = 17/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 +K E+E K ++K + HR GI G + D++L SY++++ +S+D+ IA Sbjct: 130 IKHILEDEKIKKNVFDLKRTMVAAHRLGIHTHGLDYDMLLASYLINNENNSNDLGEIAHL 189 Query: 512 WLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y+ K L K + IP D D ++ H N I L L KL + Sbjct: 190 YGDYSVKTDLEVYGKGKSEHIPDD---DDELFNHLASKVNAIESLKKTLLEKLKDHEQDA 246 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ ++ P V+++ME+ G++++ L Q+ E + L LE+ IY +GEKFNL+SPK Sbjct: 247 LFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQAGEKFNLNSPK 306 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T + L+Q+ +PI+ IL++RQ++KI+STY Sbjct: 307 QLGHILFEKLGLPVIKKTKTG-YSTAVEVLDQLKT-QSPIVSEILDYRQIAKIQSTYVKG 364 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + I + RVHT Y T TGRL+S++PNLQNIP +T+ G++IR+AF+ S P + Sbjct: 365 LLDVI-QPDGRVHTRYLQTLTATGRLSSVDPNLQNIPTRTEEGKQIRKAFVPSEPDGYIF 423 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTIN 805 S DYSQ+ELR+LAH++ + + F+ DIH A +IF + + ++V+P MRRHAK +N Sbjct: 424 SCDYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVN 483 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R A ++I YF ++P I +Y+ K R GY ETI R Sbjct: 484 FGIVYGISDYGLSKNLGISRKRAQEFIDNYFEQYPQIEDYMNKAVQEARDKGYAETIMHR 543 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +I++ K ++R ER AIN+PIQGSAADI + AMI++ K L++ L TKM++Q+H Sbjct: 544 RRYLPDIHAKKYTVRAFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVH 603 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+F+VP++E+ T +I+ M+ A + L VPL + +NW Sbjct: 604 DELIFDVPKDELETIKKIVPEVMQSA----VKLDVPLIADSGWGHNW 646 >gi|314948920|ref|ZP_07852289.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082] gi|313644710|gb|EFS09290.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082] Length = 881 Score = 360 bits (923), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 225/581 (38%), Positives = 329/581 (56%), Gaps = 40/581 (6%) Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462 FK E D++++ + G N T+EI+ KK FEN F Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENRAFHSWITDP 368 Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515 LK ++ K + L+RY +G + D++L +Y+LD+ S DI IA + + Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K K +P + + H I L L +L + ++ +++ P Sbjct: 429 DEAVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELP 485 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + ++++MEI+GI++D L+++ E S L +E+ IY+ +GE+FNL+SPKQLG ILF Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 K+ P KTKTG + T LEQ+ PI+++IL +RQ++KI+STY + L I + Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754 +VHT Y T TGRL+S++PNLQNIPI+ D G+KIR+AF+ LI S+DYSQIE Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813 LR+LAHI+ L F DIH A +FG+ E V+P MRR AK +NF I+YGIS Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + L+ L I R A YI YF ++PG+ EY+E+ + GYVET++ RR + +IN Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S +IR+ ER AIN PIQGSAADI + AMI + K L++ L MLLQ+HDELVFEVP Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 842 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+E+ + +++ ME+A ++L VPL + W E Sbjct: 843 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 879 Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 162/293 (55%), Gaps = 12/293 (4%) Query: 4 ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +N L LVDG+S +RAF+A L R +GL NAI F M ++Q + +H Sbjct: 3 KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y +YK R K P Q+ +R G+ E+ +EADDI Sbjct: 59 VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMTYIRDLLTGLGVQYYELPNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175 I T +K+ F V ++S D+DL QL S + TVK E EHV +K+ G+ Sbjct: 119 IGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLT 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++++ ++ L GD+ DNIPG+ IG KTA LL++YG++E I + +KQ K +EN++ Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A LS+KL + T P+ + ++ L E N +L+ F K ++F + ++++ Sbjct: 239 DKEQAFLSKKLATINTSAPVDVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291 >gi|227551619|ref|ZP_03981668.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257887242|ref|ZP_05666895.1| DNA polymerase A [Enterococcus faecium 1,141,733] gi|257895778|ref|ZP_05675431.1| DNA polymerase A [Enterococcus faecium Com12] gi|293377607|ref|ZP_06623796.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1] gi|227179296|gb|EEI60268.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257823296|gb|EEV50228.1| DNA polymerase A [Enterococcus faecium 1,141,733] gi|257832343|gb|EEV58764.1| DNA polymerase A [Enterococcus faecium Com12] gi|292643607|gb|EFF61728.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1] Length = 881 Score = 360 bits (923), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 225/581 (38%), Positives = 330/581 (56%), Gaps = 40/581 (6%) Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462 FK E D++++ + G N T+EI+ KK FEN+ F Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENQAFHSWITDP 368 Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515 LK ++ K + L+RY +G + D++L +Y+LD+ S DI IA + + Sbjct: 369 NRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K K +P + + H I L L +L + ++ +++ P Sbjct: 429 DETVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELP 485 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + ++++MEI+GI++D L+++ E S L +E+ IY+ +GE+FNL+SPKQLG ILF Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 K+ P KTKTG + T LEQ+ PI+++IL +RQ++KI+STY + L I + Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754 +VHT Y T TGRL+S++PNLQNIPI+ D G+KIR+AF+ LI S+DYSQIE Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813 LR+LAHI+ L F DIH A +FG+ E V+P MRR AK +NF I+YGIS Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + L+ L I R A YI YF ++PG+ EY+E+ + GYVET++ RR + +IN Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S +IR+ ER AIN PIQGSAADI + AMI + K L++ L MLLQ+HDELVFEVP Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 842 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+E+ + +++ ME+A ++L VPL + W E Sbjct: 843 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 879 Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 162/293 (55%), Gaps = 12/293 (4%) Query: 4 ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +N L LVDG+S +RAF+A L R +GL NAI F M ++Q + +H Sbjct: 3 KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y +YK R K P Q+P +R G+ E+ +EADDI Sbjct: 59 VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175 I T +K F V ++S D+DL QL S + TVK E EHV +K+ G+ Sbjct: 119 IGTLAEKVDKNQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLI 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++++ ++ L GD+ DNIPG+ IG KTA LL++YG++E I + +KQ K +EN++ Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A LS+KL + T P+ + ++ L E N +L+ F K ++F + ++++ Sbjct: 239 DKEQAFLSKKLATINTSAPVEVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291 >gi|218282129|ref|ZP_03488428.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989] gi|218216922|gb|EEC90460.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989] Length = 858 Score = 360 bits (923), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 202/507 (39%), Positives = 306/507 (60%), Gaps = 25/507 (4%) Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHD-IASIAQKWLSYTRKEILKSRKSSIPIDK 532 +L RYG F +D+ + ++L+S + D + L + ++ K K P Sbjct: 368 LLDRYGFKWNTFNDDLHIAGFLLNSTATDSDAVLEALHITLPESFHDVSKKTKEE-PAFS 426 Query: 533 ISDSQVQEHAI-----ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 ++ Q H++ E ILQ L E +L +Y ++ P+ V+ ME G Sbjct: 427 LNREQALCHSLTQQLYEKKGEILQ-------SLKEENVLSLYREIEMPLTRVLFSMEQEG 479 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I I + L + A +++ L +L + IY +G FN++SPKQL ++LF +L SG K ++ Sbjct: 480 ISIQESFLDEYGALLNEKLETLAQQIYSHAGMIFNINSPKQLANVLFDELNLSSGGKKRS 539 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 T+A LE++ G +PI+ +ILE+R++SK+ STY D L HI + Q++HT ++ Sbjct: 540 ----TSADVLEKLR-GKHPIVDDILEYRKISKVSSTYIDGLKKHI-RSDQKIHTSFNQTM 593 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S EPNLQNI I+ +LG++IR+AF++ L+SADYSQIELR+LAH+A + Sbjct: 594 TQTGRLSSSEPNLQNISIRDELGKEIRKAFVAQEGYHLLSADYSQIELRMLAHMANEDHM 653 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F LDIH A IF + E+V RR AKT+NF I+YG + F L++QL I R E Sbjct: 654 IKAFNEGLDIHTKTATLIFNCSPEEVDEHKRRIAKTVNFGIVYGQTEFGLSSQLNITRKE 713 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A +++K YF +P IHEY+ + +F ++NGYVET+F RR EIN R +RAA Sbjct: 714 AGEFMKMYFESYPKIHEYMNQLIDFCKENGYVETLFHRRREIPEINDKNFMTREFGKRAA 773 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +NAPIQGSAAD+ + AM+ + ++L+D + +KMLLQIHDEL+F VP+EE+ +++ + Sbjct: 774 MNAPIQGSAADLIKIAMLKMDQALKDANVNSKMLLQIHDELIFLVPDEELDLMQKLVKET 833 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A + L+VPLK +I V +W E Sbjct: 834 MESA----MELKVPLKASISVGKSWYE 856 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 153/292 (52%), Gaps = 22/292 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L L+DG+S ++RA+YAT R +G+P NA+ GF ML K + + I V Sbjct: 4 LLLLDGNSMLFRAYYATLYTHRMTTSNGIPTNAVYGFVMMLNKAIDIIEPDKIL----VA 59 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 +D TFR++ + YK R + E L+ Q P+VR A GI E +G+EADDII + Sbjct: 60 WDAGKPTFRHKQFAAYKGTRKPLDEELIVQFPIVREYLDAAGIKRYEQEGYEADDIIGSM 119 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 TI+++D+DL+QL+ P+T + K E +D +++ +GI P +++ Sbjct: 120 AKCCND--IQTTILTSDRDLLQLIDPSTHVLLMKKGLSEMELMDEQNLFDTYGITPSQVI 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++ L GD+ DNIPG+ G+G KTA LL +Y +EN+ + +K K + + + + A Sbjct: 178 DMKGLMGDTADNIPGVQGVGEKTALRLLNQYSTVENVYAHIDEVKGKLKEKLEKD-KDNA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHL----ILEDCNGPRLISFLKALEFTKLINRV 288 +S +L + T + + L I ED NG F + E L+NR Sbjct: 237 FMSLELATIYTKMELPFSLNDCEFTGIQEDVNG-----FYEKYEMRSLVNRT 283 >gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 891 Score = 360 bits (923), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P ++ Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLEV- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E E Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I ++L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVRVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|293556212|ref|ZP_06674802.1| DNA polymerase I [Enterococcus faecium E1039] gi|294615648|ref|ZP_06695503.1| DNA polymerase type I [Enterococcus faecium E1636] gi|291591477|gb|EFF23131.1| DNA polymerase type I [Enterococcus faecium E1636] gi|291601631|gb|EFF31893.1| DNA polymerase I [Enterococcus faecium E1039] Length = 881 Score = 360 bits (923), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 225/581 (38%), Positives = 329/581 (56%), Gaps = 40/581 (6%) Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462 FK E D++++ + G N T+EI+ KK FEN F Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENRAFHSWITDP 368 Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515 LK ++ K + L+RY +G + D++L +Y+LD+ S DI IA + + Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K K +P + + H I L L +L + ++ +++ P Sbjct: 429 DEAVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELP 485 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + ++++MEI+GI++D L+++ E S L +E+ IY+ +GE+FNL+SPKQLG ILF Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 K+ P KTKTG + T LEQ+ PI+++IL +RQ++KI+STY + L I + Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754 +VHT Y T TGRL+S++PNLQNIPI+ D G+KIR+AF+ LI S+DYSQIE Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813 LR+LAHI+ L F DIH A +FG+ E V+P MRR AK +NF I+YGIS Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + L+ L I R A YI YF ++PG+ EY+E+ + GYVET++ RR + +IN Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKNQGYVETLYHRRRYLPDIN 782 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S +IR+ ER AIN PIQGSAADI + AMI + K L++ L MLLQ+HDELVFEVP Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKEAGLQATMLLQVHDELVFEVP 842 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+E+ + +++ ME+A ++L VPL + W E Sbjct: 843 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 879 Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 163/293 (55%), Gaps = 12/293 (4%) Query: 4 ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +N L LVDG+S +RAF+A L R +GL NAI F M ++Q + +H Sbjct: 3 KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y +YK R K P Q+P +R G+ E+ +EADDI Sbjct: 59 VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175 I T +K+ F V ++S D+DL QL S + TVK E EHV +K+ G+ Sbjct: 119 IGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLT 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++++ ++ L GD+ DNIPG+ IG KTA LL++YG++E I + +KQ K +EN++ Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A LS+KL + T P+ + ++ L E N +L+ F K ++F + ++++ Sbjct: 239 DKEQAFLSKKLATINTSAPVDVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291 >gi|257898348|ref|ZP_05678001.1| DNA polymerase A [Enterococcus faecium Com15] gi|257836260|gb|EEV61334.1| DNA polymerase A [Enterococcus faecium Com15] Length = 881 Score = 360 bits (923), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 225/581 (38%), Positives = 330/581 (56%), Gaps = 40/581 (6%) Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462 FK E D++++ + G N T+EI+ KK FEN+ F Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENQAFHSWITDP 368 Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515 LK ++ K + L+RY +G + D++L +Y+LD+ S DI IA + + Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K K +P + + H I L L +L + ++ +++ P Sbjct: 429 DETVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELP 485 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + ++++MEI+GI++D L+++ E S L +E+ IY+ +GE+FNL+SPKQLG ILF Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 K+ P KTKTG + T LEQ+ PI+++IL +RQ++KI+STY + L I + Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754 +VHT Y T TGRL+S++PNLQNIPI+ D G+KIR+AF+ LI S+DYSQIE Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813 LR+LAHI+ L F DIH A +FG+ E V+P MRR AK +NF I+YGIS Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + L+ L I R A YI YF ++PG+ EY+E+ + GYVET++ RR + +IN Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S +IR+ ER AIN PIQGSAADI + AMI + K L++ L MLLQ+HDELVFEVP Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 842 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+E+ + +++ ME+A ++L VPL + W E Sbjct: 843 EKELESLDKLVKKVMEQA----VSLHVPLITDSSWGKTWYE 879 Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 162/293 (55%), Gaps = 12/293 (4%) Query: 4 ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +N L LVDG+S +RAF+A L R +GL NAI F M ++Q + +H Sbjct: 3 KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y +YK R K P Q+P +R G+ E+ +EADDI Sbjct: 59 VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175 I T +K F V ++S D+DL QL S + TVK E EHV +K+ G+ Sbjct: 119 IGTLAEKVDKNQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLI 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++++ ++ L GD+ DNIPG+ IG KTA LL++YG++E I + +KQ K +EN++ Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A LS+KL + T P+ + ++ L E N +L+ F K ++F + ++++ Sbjct: 239 DKEQAFLSKKLATINTSAPVEVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291 >gi|257878419|ref|ZP_05658072.1| DNA polymerase A [Enterococcus faecium 1,230,933] gi|257889382|ref|ZP_05669035.1| DNA polymerase A [Enterococcus faecium 1,231,410] gi|257894395|ref|ZP_05674048.1| DNA polymerase A [Enterococcus faecium 1,231,408] gi|260560008|ref|ZP_05832186.1| DNA polymerase A [Enterococcus faecium C68] gi|293559954|ref|ZP_06676462.1| DNA polymerase I [Enterococcus faecium E1162] gi|314937782|ref|ZP_07845099.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04] gi|314941672|ref|ZP_07848552.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C] gi|314950962|ref|ZP_07854029.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A] gi|314992964|ref|ZP_07858360.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B] gi|314996411|ref|ZP_07861454.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01] gi|257812647|gb|EEV41405.1| DNA polymerase A [Enterococcus faecium 1,230,933] gi|257825742|gb|EEV52368.1| DNA polymerase A [Enterococcus faecium 1,231,410] gi|257830774|gb|EEV57381.1| DNA polymerase A [Enterococcus faecium 1,231,408] gi|260073843|gb|EEW62167.1| DNA polymerase A [Enterococcus faecium C68] gi|291606042|gb|EFF35468.1| DNA polymerase I [Enterococcus faecium E1162] gi|313589393|gb|EFR68238.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01] gi|313592487|gb|EFR71332.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B] gi|313596817|gb|EFR75662.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A] gi|313599563|gb|EFR78406.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C] gi|313642813|gb|EFS07393.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04] Length = 881 Score = 360 bits (923), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 225/581 (38%), Positives = 329/581 (56%), Gaps = 40/581 (6%) Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462 FK E D++++ + G N T+EI+ KK FEN F Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENRAFHSWITDP 368 Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515 LK ++ K + L+RY +G + D++L +Y+LD+ S DI IA + + Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K K +P + + H I L L +L + ++ +++ P Sbjct: 429 DEAVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELP 485 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + ++++MEI+GI++D L+++ E S L +E+ IY+ +GE+FNL+SPKQLG ILF Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 K+ P KTKTG + T LEQ+ PI+++IL +RQ++KI+STY + L I + Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754 +VHT Y T TGRL+S++PNLQNIPI+ D G+KIR+AF+ LI S+DYSQIE Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813 LR+LAHI+ L F DIH A +FG+ E V+P MRR AK +NF I+YGIS Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + L+ L I R A YI YF ++PG+ EY+E+ + GYVET++ RR + +IN Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S +IR+ ER AIN PIQGSAADI + AMI + K L++ L MLLQ+HDELVFEVP Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 842 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+E+ + +++ ME+A ++L VPL + W E Sbjct: 843 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 879 Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 163/293 (55%), Gaps = 12/293 (4%) Query: 4 ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +N L LVDG+S +RAF+A L R +GL NAI F M ++Q + +H Sbjct: 3 KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y +YK R K P Q+P +R G+ E+ +EADDI Sbjct: 59 VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175 I T +K+ F V ++S D+DL QL S + TVK E EHV +K+ G+ Sbjct: 119 IGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLT 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++++ ++ L GD+ DNIPG+ IG KTA LL++YG++E I + +KQ K +EN++ Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A LS+KL + T P+ + ++ L E N +L+ F K ++F + ++++ Sbjct: 239 DKEQAFLSKKLATINTSAPVDVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291 >gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803] gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803] Length = 891 Score = 360 bits (923), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 200/528 (37%), Positives = 318/528 (60%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K++ N K + K + L GI ++G + D+++ +Y+LD + D ++A+ Sbjct: 372 FKEWLANGEMRKHTFDAKRAIVALKWNGIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 431 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P ++ V EH +V+ + +L + Sbjct: 432 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFIEELEKNEQYE 487 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V++ ME+ G+++D D L+ + E++ L +E+ IY L+G +FN++SPK Sbjct: 488 LFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 547 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II NIL +RQL K+ STY + Sbjct: 548 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEG 605 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+++ Sbjct: 606 LLKVVHEDSCKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 663 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIA L + F+N +DIH A ++FGV ++V+ MRR AK + Sbjct: 664 MYAADYSQIELRVLAHIANDKGLVEAFQNDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAV 723 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R AA++I++Y FPG+ EY++ +Q GYV T+ Sbjct: 724 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLN 783 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQG+AADI ++AMI + LE+ L ++LLQ+ Sbjct: 784 RRRYIPEITSRNFNLRSFAERTAMNTPIQGTAADIIKKAMIIMADRLEEEGLQARLLLQV 843 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE P+EEI +++ ME A I L VPLKV+ W Sbjct: 844 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 887 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E+ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELANYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTTEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185] gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2] gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2] gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185] Length = 891 Score = 360 bits (923), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P ++ Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPKLEV- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E E Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I ++L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27] gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27] Length = 834 Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 179/411 (43%), Positives = 272/411 (66%), Gaps = 8/411 (1%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 EKLL +Y ++KP+ V++ ME TG+++D L+ +S E+++ + LEE ++ L+G FN Sbjct: 426 EKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPFN 485 Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 L+S QL +LF +L+ P+ KT KTG+ T+A LE + +PI++ IL+ R+L+K+K Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREA-HPIVEKILQHRELTKLK 544 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 +TY D LP+ ++ RT R+HT ++ +T TGRL+S +PNLQNIP++T LGQ+IRRAF++ Sbjct: 545 NTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEA 604 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 L++ DYSQIELR+LAH++ L +VF+ DIH A+ +FGV E V P MRR A Sbjct: 605 GWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAA 664 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 KT+NF ++YG+S RL+ +L IP EA +I+RYF FP + +IEKT R+ GYVET Sbjct: 665 KTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVET 724 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 +FGRR + ++N+ S+R ER A N P+QG+AAD+ + AM+ + L + + +ML Sbjct: 725 LFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLRE--MGARML 782 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LQ+HDEL+ E P+ + + +MEKA L VPL+V + + +W Sbjct: 783 LQVHDELLLEAPQARAEEVAALAKEAMEKAY----PLAVPLEVEVGIGEDW 829 Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 111/286 (38%), Positives = 161/286 (56%), Gaps = 8/286 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L+ +S+ Sbjct: 8 FESKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGYKSVF-- 64 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR+E Y YKA R PE QL L++ G +E+ G+EADD+ Sbjct: 65 --VVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDV 122 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 +AT AEKEG+ V I++ D+DL QLVS + + I E + +K+G+ PE+ V Sbjct: 123 LATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHP-EGHLITPEWLWEKYGLRPEQWV 181 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DN+PG+ GIG KTA LL+E+G+LE++L N R+K + RE I + E Sbjct: 182 DFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLESLLKNLDRVKPENVREKIKAHLEDL 241 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 RLS +L +R D+P+ + L D G R +FL+ LEF L++ Sbjct: 242 RLSLELSRVRADLPLEVDLAQGREPDREGLR--AFLERLEFGSLLH 285 >gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C] gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C] Length = 897 Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 195/511 (38%), Positives = 294/511 (57%), Gaps = 9/511 (1%) Query: 467 HNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKS 523 H++K L R G++ G ED LMS +L R H + +A++ S R + Sbjct: 391 HDLKSAAHALARLGLARSGPGEDTELMSRLLLPTRREHALVDVARERTSCELPRSPADGA 450 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 ++ + ++ + +V A + + L L L E+L +Y +++P++ V+ +M Sbjct: 451 KRGAPGLEGLEVERVAAWAGACAAALPDLAAKLAEALETERLGALYREVERPLVPVLVEM 510 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E GI +D+ ++ +SAE K + LE I+ +G FN++S ++L +LF +L+ P Sbjct: 511 ERAGILVDRGAMEGMSAEFGKAMQDLEARIHAAAGHPFNVASTRELAQVLFVELELPVVK 570 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 + KTG +T QD+ + + + + +LE R LSK+K TY D+LP ++ R+HT + Sbjct: 571 RLKTG--PSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTF 628 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAK 763 A TGRL+S +PNLQNIP++T+L ++IR+AF++P +L+SADYSQIELRILAH + Sbjct: 629 HQAGAATGRLSSSDPNLQNIPVRTELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSD 688 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L Q F + D+H AAE FGV E+V+P RR AK +NF I YG+S F L+ +L + Sbjct: 689 DPGLLQAFRDREDVHTRTAAETFGVAPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQRLDL 748 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 P SEA I RYF R+ G+ YIE R G T+FGR EI + ++RN Sbjct: 749 PPSEAQGIIDRYFTRYAGVRRYIEWAVEEARAKGESRTLFGRARAMPEIAARNPALRNAA 808 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER AIN PIQG+AAD+ + AMI VH +L + ++LLQ+HDELV EVPE E+ + Sbjct: 809 ERTAINTPIQGTAADVVKIAMIRVHAALAQERREARLLLQVHDELVLEVPERELEPVEAL 868 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME A L+VPL+V + W E Sbjct: 869 VRREMEGAA----RLKVPLEVQVGHGQTWAE 895 Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 116/291 (39%), Positives = 166/291 (57%), Gaps = 16/291 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGS FI+RA++A P LS G+P NA+ GF NML K L +E +H A++FD Sbjct: 4 LTLIDGSGFIFRAYHAIPHLS-TTKGIPTNAVYGFTNMLLKAL----REHAPTHVALVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +FR++I P+YKANRP+ P+ L Q PLVR +A +P IE G+EADDIIAT Sbjct: 59 AGRRSFRHDIDPEYKANRPEAPDDLAAQFPLVRDVARALNVPVIEEAGYEADDIIATLAS 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-----IDIEHVIKKWGIPPEKMVC 181 A EG+ V +++ DKD QLV LYD + E V KK G+ PE+++ Sbjct: 119 HARAEGWEVVVVTGDKDFAQLVDGGLSLYDPMAEASGRGGWTGPAEVEKKMGVRPEQVIE 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILE 235 Q++ GD IDN+PGIPG+G TAA L++ +G E +L + I +K R+ ++ Sbjct: 179 YQSILGDKIDNVPGIPGVGEVTAAALVRHFGTTEAMLARPAEIPAAVSRGGEKLRDKVVA 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 AE R +R+LV LR D+ + E + R + LEF++L+ Sbjct: 239 NAERIRTNRRLVALRRDLDLPFAPEAFGRRPPDQERARALFSELEFSRLVK 289 >gi|257882837|ref|ZP_05662490.1| DNA polymerase A [Enterococcus faecium 1,231,502] gi|261207884|ref|ZP_05922569.1| DNA polymerase A [Enterococcus faecium TC 6] gi|289566952|ref|ZP_06447356.1| DNA polymerase I [Enterococcus faecium D344SRF] gi|293569014|ref|ZP_06680327.1| DNA polymerase I [Enterococcus faecium E1071] gi|294623286|ref|ZP_06702151.1| DNA polymerase I [Enterococcus faecium U0317] gi|257818495|gb|EEV45823.1| DNA polymerase A [Enterococcus faecium 1,231,502] gi|260078267|gb|EEW65973.1| DNA polymerase A [Enterococcus faecium TC 6] gi|289161251|gb|EFD09147.1| DNA polymerase I [Enterococcus faecium D344SRF] gi|291588447|gb|EFF20282.1| DNA polymerase I [Enterococcus faecium E1071] gi|291597314|gb|EFF28500.1| DNA polymerase I [Enterococcus faecium U0317] Length = 881 Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 225/581 (38%), Positives = 329/581 (56%), Gaps = 40/581 (6%) Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462 FK E D++++ + G N T+EI+ KK FEN F Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENRAFHSWITDP 368 Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515 LK ++ K + L+RY +G + D++L +Y+LD+ S DI IA + + Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K K +P + + H I L L +L + ++ +++ P Sbjct: 429 DEAVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELP 485 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + ++++MEI+GI++D L+++ E S L +E+ IY+ +GE+FNL+SPKQLG ILF Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 K+ P KTKTG + T LEQ+ PI+++IL +RQ++KI+STY + L I + Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754 +VHT Y T TGRL+S++PNLQNIPI+ D G+KIR+AF+ LI S+DYSQIE Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813 LR+LAHI+ L F DIH A +FG+ E V+P MRR AK +NF I+YGIS Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + L+ L I R A YI YF ++PG+ EY+E+ + GYVET++ RR + +IN Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S +IR+ ER AIN PIQGSAADI + AMI + K L++ L MLLQ+HDELVFEVP Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 842 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+E+ + +++ ME+A ++L VPL + W E Sbjct: 843 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 879 Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 163/293 (55%), Gaps = 12/293 (4%) Query: 4 ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +N L LVDG+S +RAF+A L R +GL NAI F M ++Q + +H Sbjct: 3 KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y +YK R K P Q+P +R G+ E+ +EADDI Sbjct: 59 VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175 I T +K+ F V ++S D+DL QL S + TVK E EHV +K+ G+ Sbjct: 119 IGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLT 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++++ ++ L GD+ DNIPG+ IG KTA LL++YG++E I + +KQ K +EN++ Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A LS+KL + T P+ + ++ L E N +L+ F K ++F + ++++ Sbjct: 239 DKEQAFLSKKLATINTSAPVDVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291 >gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5] gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5] Length = 881 Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 217/603 (35%), Positives = 342/603 (56%), Gaps = 44/603 (7%) Query: 395 ITDTMDAF----HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDS----------- 439 I DT +AF H A A+ +D + + VE + +S+ + + Sbjct: 298 IADTAEAFAELLHEAATA-AVIAIDTETTSEHAVEADLVGISIAIGEQAWYVPIDHAHTD 356 Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM---RGFEDIMLMSYVL 496 T +N T ++ + + L +G NIKYD +VL R+ +++ R F D M+ SY+L Sbjct: 357 THRNMPTADVQKLITAL-DRSDLLLVGQNIKYDLIVLQRHDMALPQPRLF-DTMIASYLL 414 Query: 497 DSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLW 553 D+ R SH + +A ++LS+ K+++ + +D + ++ +A E++ + L L+ Sbjct: 415 DANRRSHGLDQLAVEFLSHEMIAFKDVVPKGSTFRDVDIPTAAR---YAGEDAAITLALY 471 Query: 554 LLLRPKLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612 L P+ +E+ H ++ ++ P++ V+ ME+ GI +D+++L + ++ L LEE Sbjct: 472 NLFAPR--IEQEYHELFHAIEMPLVRVLCHMEMLGIAVDREMLGNLHESFTRRLHELEEK 529 Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNIL 672 IY+L+GE FN++SPKQL +LF K+ P KTKTG + T LE + I N+L Sbjct: 530 IYELAGEAFNINSPKQLATLLFEKMGIPPVKKTKTG-YSTDVSVLEAL--APQYEIANVL 586 Query: 673 -EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731 ++R +SK+ STY ++L IN T R+HT ++ TGRL+S +PNLQNIPI+T+ G+ Sbjct: 587 TQYRMVSKLLSTYVNALSELINPWTGRIHTSFNQTVANTGRLSSSDPNLQNIPIRTEEGR 646 Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791 ++R+AF+ P ++ADYSQIELRI AH++ + + F DIH A IFG + Sbjct: 647 EVRKAFVPAPGFCFVAADYSQIELRIAAHLSGDESMLKSFAEEKDIHAQTADAIFGSS-- 704 Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851 P RR AK +NF I+YGIS F+L+ L + E I YF R+PG+ YI+ Sbjct: 705 --EPNYRRMAKAVNFGILYGISAFKLSRDLGMTPKEGQALIDSYFLRYPGVKAYIDHQIA 762 Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911 F R++GY +T++GRR + +INS +IR ER A+N PIQG++ADI + AM +H+ L Sbjct: 763 FAREHGYAQTLYGRRRYLPDINSRNRNIREAAERNAVNMPIQGTSADIIKIAMNRIHQQL 822 Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 ++ +MLLQIHDEL+FEVP E+ S + ME A L+V L V + NN Sbjct: 823 APYQ--ARMLLQIHDELLFEVPFEQAEPFSAFLQEQMESAA----QLKVRLTVTVSSGNN 876 Query: 972 WQE 974 W + Sbjct: 877 WND 879 Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 112/251 (44%), Positives = 152/251 (60%), Gaps = 8/251 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDG+SFIY+AFYA LS + GLP NAI GF N+L K + I V+FD Sbjct: 3 LLLVDGNSFIYKAFYAIRGLSNRA-GLPTNAIYGFRNILEKCHNAIEPDGIV----VVFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+E YP YKA R K PE L+ Q+P + +A G+ + I+GFEADD+I T T Sbjct: 58 APGPTFRHESYPQYKAQRQKAPEDLISQIPWIHRLVEAQGLKRLCIEGFEADDVIGTITC 117 Query: 127 IAEKEGF-AVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A+ G+ V I ++DKDL QL++ P LYDT KE +D K G+ P +++ A Sbjct: 118 QAQDAGYREVYIATSDKDLGQLLTKPGVFLYDTSKERILDAAAFHDKMGVTPAQVIDYLA 177 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD+ DNIPG+ GIG K+A LL++YG L+NI + I + + E+ + A LSR Sbjct: 178 LVGDASDNIPGVKGIGPKSAQKLLEQYGTLDNIYAHVDEISGAVGKR-LQEFRDDAFLSR 236 Query: 245 KLVMLRTDVPI 255 +L+ L T VP+ Sbjct: 237 RLLELHTSVPL 247 >gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407] gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407] gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 891 Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 201/528 (38%), Positives = 316/528 (59%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K + N K + K + L GI M+G + D+++ +Y+LD + D ++A+ Sbjct: 372 FKAWLANGEMRKHTFDAKRAIVALKWNGIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKM 431 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P ++ V EH +V+ + +L + Sbjct: 432 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFVEELKKNEQYE 487 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V++ ME+ G+++D + L+ + E+ L +E+ IY L+G +FN++SPK Sbjct: 488 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELVGRLKEMEQEIYKLAGTEFNINSPK 547 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II NIL +RQL K+ STY + Sbjct: 548 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MDRHEIIPNILHYRQLGKLNSTYIEG 605 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+++ Sbjct: 606 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 663 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIA L + F++ +DIH A ++FGV ++V+ MRR AK + Sbjct: 664 MYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAV 723 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R AA++I++Y FPG+ EY+E +Q GYV T+ Sbjct: 724 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLN 783 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQG+AADI ++AMI + LE+ L ++LLQ+ Sbjct: 784 RRRYIPEITSRNFNLRSFAERTAMNTPIQGTAADIIKKAMIIMADRLEEEGLQARLLLQV 843 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE P+EEI Q++ ME A I L VPLKV+ W Sbjct: 844 HDELIFEAPKEEIEKLEQLVPEVMEHA----IELAVPLKVDYSYGPTW 887 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E E Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEKLEENKEQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I ++L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase Length = 832 Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 194/496 (39%), Positives = 300/496 (60%), Gaps = 31/496 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+ + +D ML++Y+LD ++ + +A+++ +E Sbjct: 362 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 401 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A + + LW L + E+LL +Y +++P+ V++ ME TG+++D L+ Sbjct: 402 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 458 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656 +S E+++ + LE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 459 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 518 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++ +T TGRL Sbjct: 519 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLCCC 577 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IRR FI+ L++ DYSQIELR+LAH++ L +VF+ D Sbjct: 578 DPNLQNIPVRTPLGQRIRRGFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 637 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+ +FGV E V P MRR AKTINF ++YG+S RL+ +L IP EA +I+RYF Sbjct: 638 IHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYF 697 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IEKT R+ GYVET+FGRR + ++ + S+R ER A N P+QG+A Sbjct: 698 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 757 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + LE+ + +MLLQ+HDELV E P+E +++ ME P Sbjct: 758 ADLMKLAMVKLFPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 812 Query: 957 NLRVPLKVNIKVSNNW 972 L VPL+V + + +W Sbjct: 813 -LAVPLEVEVGIGEDW 827 Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 108/296 (36%), Positives = 159/296 (53%), Gaps = 30/296 (10%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L+ I Sbjct: 8 FEPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDAVI--- 63 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR+E Y YKA R PE QL L++ G+ +E+ G+EADD+ Sbjct: 64 --VVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDV 121 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIK 170 +A+ AEKEG+ V I++ DKDL QL+S ++I + H + + Sbjct: 122 LASLAKKAEKEGYEVRILTADKDLYQLLS-----------DRIHVLHPEGYLITPAWLWE 170 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K+G+ P++ +ALTGD DN+PG+ GIG KTA LL+E+G+LE +L N R+K R Sbjct: 171 KYGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAI-R 229 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 E IL + + +LS L +RTD+P+ + D RL +FL+ LEF L++ Sbjct: 230 EKILAHMDDLKLSWDLAKVRTDLPLEVDFAKRREPDRE--RLRAFLERLEFGSLLH 283 >gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str. T13001] Length = 891 Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 196/501 (39%), Positives = 308/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P K+ Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LCNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 177/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E E Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEAVYENIDQVSGKKLKEKLEENKEQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I ++L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMFESLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|69246664|ref|ZP_00604054.1| DNA polymerase A [Enterococcus faecium DO] gi|68195138|gb|EAN09596.1| DNA polymerase A [Enterococcus faecium DO] Length = 868 Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 225/581 (38%), Positives = 329/581 (56%), Gaps = 40/581 (6%) Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462 FK E D++++ + G N T+EI+ KK FEN F Sbjct: 298 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENRAFHSWITDP 355 Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515 LK ++ K + L+RY +G + D++L +Y+LD+ S DI IA + + Sbjct: 356 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 415 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K K +P + + H I L L +L + ++ +++ P Sbjct: 416 DEAVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELP 472 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + ++++MEI+GI++D L+++ E S L +E+ IY+ +GE+FNL+SPKQLG ILF Sbjct: 473 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 532 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 K+ P KTKTG + T LEQ+ PI+++IL +RQ++KI+STY + L I + Sbjct: 533 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 589 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754 +VHT Y T TGRL+S++PNLQNIPI+ D G+KIR+AF+ LI S+DYSQIE Sbjct: 590 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 649 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813 LR+LAHI+ L F DIH A +FG+ E V+P MRR AK +NF I+YGIS Sbjct: 650 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 709 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + L+ L I R A YI YF ++PG+ EY+E+ + GYVET++ RR + +IN Sbjct: 710 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 769 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S +IR+ ER AIN PIQGSAADI + AMI + K L++ L MLLQ+HDELVFEVP Sbjct: 770 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVP 829 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+E+ + +++ ME+A ++L VPL + W E Sbjct: 830 EKELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTWYE 866 Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 98/282 (34%), Positives = 155/282 (54%), Gaps = 16/282 (5%) Query: 17 YRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVT 71 +RAF+ PL + + +GL NAI F M ++Q + +H V FD T Sbjct: 3 FRAFF--PLHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTHVLVAFDAGKTT 56 Query: 72 FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKE 131 FR E+Y +YK R K P Q+P +R G+ E+ +EADDII T +K+ Sbjct: 57 FRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDIIGTLAEKVDKD 116 Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKMVCLQALT 186 F V ++S D+DL QL S + TVK E EHV +K+ G+ P++++ ++ L Sbjct: 117 QFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLTPKQIIDMKGLA 176 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPG+ IG KTA LL++YG++E I + +KQ K +EN++ E A LS+KL Sbjct: 177 GDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLINDKEQAFLSKKL 236 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + T P+ + ++ L E N +L+ F K ++F + ++++ Sbjct: 237 ATINTSAPVDVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 278 >gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] Length = 878 Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 197/528 (37%), Positives = 322/528 (60%), Gaps = 27/528 (5%) Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514 F +E K ++K ++ L G +RG D++L +Y+++ S++ +A +S Sbjct: 363 FLADEKIAKDIFDLKRSRVALMWQGFDLRGVAFDLLLATYIINPTNVSNEFKKVA---MS 419 Query: 515 YTRKEIL-------KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 Y ++L K K +I +SQ+ H+I+ + +L+L +L + L Sbjct: 420 YDYDDVLYDEEVYGKGAKRAIA----EESQIARHSIDIATAVLKLKETALEQLKEQDQLT 475 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +YE ++ P+ DV+++ME G+ +D L ++ ++ + +LE IY+ +G FN++SPK Sbjct: 476 LYEEMEMPLADVLAEMEFNGMALDLKTLDEMGQDLKGRITALENEIYEHAGMSFNINSPK 535 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG++LF KL P KTKTG + T A LE+++ +PIIK+I+E+R L+K+ STY + Sbjct: 536 QLGEVLFDKLSLPVIKKTKTG-YSTNADVLEKLSDA-HPIIKSIMEYRTLTKLYSTYIEG 593 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +VHT ++ A T TGRL+S+EPNLQNIPI+ + G+ IR+AF+ P+++ Sbjct: 594 LKKACYS-DGKVHTIFNQALTQTGRLSSIEPNLQNIPIRLEEGRLIRKAFV--PSEEGWV 650 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 ++ ADYSQIELRILAHI+ L + F+ DIH+ A ++F V+ E+++ +RR AK I Sbjct: 651 ILGADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAI 710 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF IIYG+S F L+ L I + EA YI Y + GI++Y+E T + +GY T+F Sbjct: 711 NFGIIYGMSAFGLSENLNITQKEAKKYIDHYLKTYSGINQYMEDTVKDAKFHGYATTLFN 770 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + E++ ++R ER A+NAPIQG+AADI ++AMI V ++++ ++ +++LLQ+ Sbjct: 771 RRRYIPELSQKNYALRQFGERTAMNAPIQGTAADIIKKAMIDVANAMKEKQVKSRLLLQV 830 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FEVP+EE+ +++ +ME + L+VPLK + W Sbjct: 831 HDELIFEVPQEELDLMIELVTKTMEDV----VKLQVPLKADYSYGPTW 874 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 111/329 (33%), Positives = 175/329 (53%), Gaps = 18/329 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 N L L+DG+S +YRA+YAT L + G+ NA+ GF NM+ K++ + +H Sbjct: 2 NTLVLIDGNSLMYRAYYATAYSGNLMKTSQGIFTNALYGFVNMMNKVMDDYHH----THM 57 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR+E YK R +P+ + Q+ L++ G+ +E+ +EADDII Sbjct: 58 LVAFDAGKTTFRHEFLETYKDGRKPMPDEMRSQINLIKKYLDLLGVKRLELPTYEADDII 117 Query: 122 ATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 T + EK F + II+ DKDL+Q+ T ++ T K E E V +K+ + P Sbjct: 118 GTLARLGEKADFEKIHIITGDKDLLQMADEKTTVHITRKGVTDIESFTPEAVFEKYELSP 177 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 ++V L+ L GD DN+PGIPG+G KTA LL+EY +EN++ N + +K K +E + Sbjct: 178 SQIVDLKGLMGDPSDNLPGIPGVGEKTAIKLLKEYQTVENLVANTASLK-GKMKEKVEAN 236 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E A L +++ + TDVP+++ + L+ + + LI K +EF + ++ D Sbjct: 237 VEQALLCKRMATIHTDVPLSVTFDDLLYQGPDVAGLIELFKEMEFNAFLKKMKLQEVKDE 296 Query: 297 ANIEPVVL-----DINTTENKGIAIETEI 320 PV + ++NT K AI EI Sbjct: 297 TPKAPVAIIGSLEELNTKIFKHSAIHVEI 325 >gi|257081123|ref|ZP_05575484.1| DNA polymerase A [Enterococcus faecalis E1Sol] gi|256989153|gb|EEU76455.1| DNA polymerase A [Enterococcus faecalis E1Sol] Length = 882 Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 210/515 (40%), Positives = 303/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521 ++ K + L+RY M G D++L +Y+LD+ ++ DI +AQ + + Sbjct: 376 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 435 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +P D + H I L L +L + ++ +++ P+ ++ Sbjct: 436 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 492 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 MEITGI++D LK++ E S+ L +EE IY +GE+FNL+SPKQLG ILF K+ P Sbjct: 493 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 552 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG + T LEQ+ PI+ +IL +RQ++KI+STY + L I + ++HT Sbjct: 553 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 609 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+KIR AF+ LI S+DYSQIELR+LAH Sbjct: 610 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 669 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L + F DIH A +FGV E V+P MRR AK +NF I+YGIS + L+ Sbjct: 670 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ 729 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF ++PG+ +Y+E+ + GYVET++ RR + +INS ++ Sbjct: 730 NLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 789 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN PIQGSAADI + AMI + + L++ KL MLLQ+HDELVFEVPE E+ Sbjct: 790 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 849 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +Q++ ME A ++L VPL + W E Sbjct: 850 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 880 Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L LVDG+S +RAF+A L R +GL NAI F NM ++Q + + +H V Sbjct: 6 LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E Y +YKA R K P Q+P +R + G+ E+ +EADDII T Sbjct: 62 AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178 +K+ F V ++S D+DL QL + T + TVK E EH+ +K+ G+ P++ Sbjct: 122 LANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ IG KTA LL++YG++E + N +K+ K +EN++ E Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 A LS++L + + P+ + +E L E N +L+ F K ++F + + ++ T Sbjct: 242 QAFLSKRLATIEVNAPVKVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDIT 294 >gi|256854276|ref|ZP_05559640.1| DNA polymerase I [Enterococcus faecalis T8] gi|307275295|ref|ZP_07556438.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134] gi|307290893|ref|ZP_07570783.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411] gi|256709836|gb|EEU24880.1| DNA polymerase I [Enterococcus faecalis T8] gi|306497963|gb|EFM67490.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411] gi|306507929|gb|EFM77056.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134] gi|315029747|gb|EFT41679.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4000] Length = 882 Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 210/515 (40%), Positives = 303/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521 ++ K + L+RY M G D++L +Y+LD+ ++ DI +AQ + + Sbjct: 376 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 435 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +P D + H I L L +L + ++ +++ P+ ++ Sbjct: 436 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 492 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 MEITGI++D LK++ E S+ L +EE IY +GE+FNL+SPKQLG ILF K+ P Sbjct: 493 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 552 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG + T LEQ+ PI+ +IL +RQ++KI+STY + L I + ++HT Sbjct: 553 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 609 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+KIR AF+ LI S+DYSQIELR+LAH Sbjct: 610 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 669 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L + F DIH A +FGV E V+P MRR AK +NF I+YGIS + L+ Sbjct: 670 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ 729 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF ++PG+ +Y+E+ + GYVET++ RR + +INS ++ Sbjct: 730 NLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 789 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN PIQGSAADI + AMI + + L++ KL MLLQ+HDELVFEVPE E+ Sbjct: 790 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 849 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +Q++ ME A ++L VPL + W E Sbjct: 850 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 880 Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L LVDG+S +RAF+A L R +GL NAI F NM ++Q + + +H V Sbjct: 6 LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E Y +YKA R K P Q+P +R + G+ E+ +EADDII T Sbjct: 62 AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178 +K+ F V ++S D+DL QL + T + TVK E EH+ +K+ G+ P++ Sbjct: 122 LANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ IG KTA LL++YG++E + N +K+ K +EN++ E Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 A LS++L + + P+ + +E L E N +L+ F K ++F + + ++ T Sbjct: 242 QAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDIT 294 >gi|291166643|gb|EFE28689.1| DNA polymerase I (POL I) [Filifactor alocis ATCC 35896] Length = 872 Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 195/527 (37%), Positives = 321/527 (60%), Gaps = 11/527 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK+ E E+ G+N+K + L YGI++ D L Y+L+ + I K Sbjct: 350 LKELLERENVFIYGNNLKREYTALKPYGITLPKISFDSQLAQYILNPSEVEQEPEKIGIK 409 Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + +S +++L K + + Q+ E+ + +I + + E Sbjct: 410 YGMPIVSPNLEDLLGKGKKRMSFSMANRVQMDEYFAKILAIISHCKTKMLDMIQEEDTKF 469 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++E+++ P++ V+ +ME GI +++D+L ++ E +K ++ E+ IYDL+GE+FN++SPK Sbjct: 470 LFEKIELPLMKVLGEMEYLGIAVNEDVLCELEQEFAKLIVQYEQEIYDLAGEEFNINSPK 529 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF KL+ P KTKTG + T A+ LE++ +PII IL +RQ+SK++STY Sbjct: 530 QLGVVLFEKLQLPVIKKTKTG-YSTGAEILEKL-YDKHPIISKILSYRQVSKLQSTYVIG 587 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747 L + IN ++R+H+ ++ T TGR++SLEPNLQNIP++T++G+++R+ F++ L+ Sbjct: 588 LLSLINPTSKRIHSTFNQTLTTTGRISSLEPNLQNIPVRTEMGRELRKVFVAKEGYVLVD 647 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIELR+LAH+A+ + + F S+DIH A+E+F V +E+V+ ++R AK +NF Sbjct: 648 ADYSQIELRVLAHMAQEKKMIEGFHGSMDIHTKTASEVFSVPVEEVTKELRSAAKAVNFG 707 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 I+YGIS F L+ L I + +A +YI YF R+PGI Y++ V + GY T+ GRR Sbjct: 708 IVYGISDFGLSNNLNITKKQAKEYIDLYFARYPGIKTYMDTIVKEVEELGYSTTLCGRRR 767 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + EI S ++N+ +R A+N PIQGSAADI + AM V + L+ K+ +++LQ+HDE Sbjct: 768 YIPEIKSSNFIVKNMGKRLAMNTPIQGSAADIIKIAMNRVFEWLKTEKIDAELVLQVHDE 827 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+ EV E++ ++ ME A ++ VPLKV+ + ++W E Sbjct: 828 LLLEVREDDAKYVRDKVIELMEGAW----SMDVPLKVDATIGDSWYE 870 Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 106/287 (36%), Positives = 162/287 (56%), Gaps = 10/287 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 LFL+DG+S I RA+YA P L K DGL NAI GF M +K + E + +V F Sbjct: 3 RLFLIDGNSLINRAYYALPPLMTK-DGLYTNAIYGFLMMFYKAMD----EYAPDYVSVAF 57 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR++ Y DYK R +P L Q+ ++ G+ EI+GFEADDII T + Sbjct: 58 DLKGPTFRHKEYKDYKGTRKGMPPELAMQIQPLKELLDTMGVHRAEIEGFEADDIIGTLS 117 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 I E E V I++ D+D +QL S TT + T K E D + V +++ + P++ + Sbjct: 118 KIGEDENLEVFILTGDRDALQLASKTTKILFTKKGISDLEVYDEDKVKERYELTPKQFID 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L+ L GDS DNIPG+ GIG KT LL+EY ++EN++++ +K + + Y E+A Sbjct: 178 LKGLMGDSSDNIPGVAGIGEKTGIKLLKEYDSIENLILHIDELKGAVKTKMEAGY-ESAV 236 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +S++L + +P+ L+ L+ E +G +L S FT L++++ Sbjct: 237 MSKRLATIVRVIPVEFSLDELLYEKKSGEQLRSLFMKYGFTSLMSKL 283 >gi|256761634|ref|ZP_05502214.1| DNA polymerase A [Enterococcus faecalis T3] gi|256964301|ref|ZP_05568472.1| DNA polymerase A [Enterococcus faecalis HIP11704] gi|257086217|ref|ZP_05580578.1| DNA polymerase A [Enterococcus faecalis D6] gi|257415442|ref|ZP_05592436.1| DNA polymerase A [Enterococcus faecalis AR01/DG] gi|307271878|ref|ZP_07553146.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855] gi|256682885|gb|EEU22580.1| DNA polymerase A [Enterococcus faecalis T3] gi|256954797|gb|EEU71429.1| DNA polymerase A [Enterococcus faecalis HIP11704] gi|256994247|gb|EEU81549.1| DNA polymerase A [Enterococcus faecalis D6] gi|257157270|gb|EEU87230.1| DNA polymerase A [Enterococcus faecalis ARO1/DG] gi|306511384|gb|EFM80386.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855] gi|315027064|gb|EFT38996.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2137] gi|323480059|gb|ADX79498.1| DNA polymerase I [Enterococcus faecalis 62] gi|327534459|gb|AEA93293.1| DNA-directed DNA polymerase I [Enterococcus faecalis OG1RF] Length = 882 Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 210/515 (40%), Positives = 303/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521 ++ K + L+RY M G D++L +Y+LD+ ++ DI +AQ + + Sbjct: 376 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 435 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +P D + H I L L +L + ++ +++ P+ ++ Sbjct: 436 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 492 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 MEITGI++D LK++ E S+ L +EE IY +GE+FNL+SPKQLG ILF K+ P Sbjct: 493 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 552 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG + T LEQ+ PI+ +IL +RQ++KI+STY + L I + ++HT Sbjct: 553 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 609 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+KIR AF+ LI S+DYSQIELR+LAH Sbjct: 610 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 669 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L + F DIH A +FGV E V+P MRR AK +NF I+YGIS + L+ Sbjct: 670 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ 729 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF ++PG+ +Y+E+ + GYVET++ RR + +INS ++ Sbjct: 730 NLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 789 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN PIQGSAADI + AMI + + L++ KL MLLQ+HDELVFEVPE E+ Sbjct: 790 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 849 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +Q++ ME A ++L VPL + W E Sbjct: 850 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 880 Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L LVDG+S +RAF+A L R +GL NAI F NM ++Q + + +H V Sbjct: 6 LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E Y +YKA R K P Q+P +R + G+ E+ +EADDII T Sbjct: 62 AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178 +K+ F V ++S D+DL QL + T + TVK E EH+ +K+ G+ P++ Sbjct: 122 LANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ IG KTA LL++YG++E + N +K+ K +EN++ E Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 A LS++L + + P+ + +E L E N +L+ F K ++F + + ++ T Sbjct: 242 QAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDIT 294 >gi|116617825|ref|YP_818196.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096672|gb|ABJ61823.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 893 Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 200/526 (38%), Positives = 321/526 (61%), Gaps = 15/526 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK ENE LK N+K ++ R G++++G D +L++Y+LD+ + + ++++AQ+ Sbjct: 373 LKSVIENEQILKNVFNVKAQLVLFKRLGLALKGVNFDFILVAYLLDTVANDNVLSTLAQR 432 Query: 512 WLSYTRKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 + Y + K K ++P D + + H ++ + +L +L + H+ Sbjct: 433 FDVYLAPDEDIYGKGAKFTVPTDT---NLLLSHVAHKADGLFKLEKPAFTELKQHEQTHL 489 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 Y ++ P+ V++ ME GI+++ + L+ ++S+ + ++ IY +GE+FNL+SPKQ Sbjct: 490 YTDIELPLAFVLADMEYQGIKVNPEYLRNKGKDLSERIADIQSAIYIEAGEEFNLNSPKQ 549 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LG +LF K+ P KTKTG +TA D+ + PI+ +IL++RQL+K+KSTY D L Sbjct: 550 LGVLLFEKMGLPVIKKTKTGY--STAVDVLEKLAPQAPIVDHILQYRQLAKLKSTYIDGL 607 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747 + I + ++HT + T TGRL+S++PNLQNIP++++ G+ IR AF+ S P ++ Sbjct: 608 LSVIYPKDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRSEEGRLIRTAFVPSHPNWQIFG 667 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV-SPQMRRHAKTINF 806 ADYSQIELR+LAH+ + + F N DIH A +FG+ + V P RR AK +NF Sbjct: 668 ADYSQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNF 727 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YGIS + LA L I R+EA +I YF FP IHE++ K F ++GYVETI RR Sbjct: 728 GIVYGISDYGLANNLGISRAEAKRFIDTYFQEFPQIHEWMNTIKTFAHEHGYVETIAHRR 787 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + +I + ++R+ ER A+N+PIQGSAADI + AMI V+++L ++ L +MLLQ+HD Sbjct: 788 RYLPDIQAKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVNEALRENNLQARMLLQVHD 847 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EL+FE P +EI ++++ + M+ A + L VPLKV+ + W Sbjct: 848 ELIFETPVDEIDELTEVVTNVMDSA----VALDVPLKVDAHHGDTW 889 Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 167/293 (56%), Gaps = 17/293 (5%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L LVDG+S +RAFYA L R H+GL NA+ F N L K++ + +A A+ Sbjct: 6 LLLVDGNSLAFRAFYAMYNQLDRMISHEGLHTNALVAFNNFLDKIV-----DPMAPDLAL 60 Query: 64 I-FDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 + +D + T R +++P+YK R K+PE Q P +R G+ E G EADDI Sbjct: 61 VAWDAGSGKETHRGKLFPEYKDGRSKVPEEFKEQFPYLREMVMLHGLRNYEQAGLEADDI 120 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 I TY+ + E G++V I++ D+DL QL + + + K+ DIE ++ +K+G+ Sbjct: 121 IGTYSRMGEAAGYSVIIVTGDQDLTQLATENVTV-NVTKKGVTDIESYTPAYIKEKFGLT 179 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ +ALTGD+ DN PG+ +G KTA LL EY N++N+ N ++KQ K ++N++ Sbjct: 180 PAQIIDKKALTGDTSDNYPGVTKVGEKTALKLLAEYNNIDNLYDNIDKLKQSKMKDNLIN 239 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A +R+L + TD + +PLE + + ++I F + L+F + + ++ Sbjct: 240 DRELAFQARELATILTDANLPLPLEEMEYRGVDFEKIIPFYENLDFKQHLAKI 292 >gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus faecalis V583] gi|227554989|ref|ZP_03985036.1| DNA polymerase I [Enterococcus faecalis HH22] gi|229548814|ref|ZP_04437539.1| DNA polymerase I [Enterococcus faecalis ATCC 29200] gi|255971330|ref|ZP_05421916.1| DNA polymerase A [Enterococcus faecalis T1] gi|255973949|ref|ZP_05424535.1| DNA polymerase A [Enterococcus faecalis T2] gi|256617748|ref|ZP_05474594.1| DNA polymerase A [Enterococcus faecalis ATCC 4200] gi|256957263|ref|ZP_05561434.1| DNA polymerase A [Enterococcus faecalis DS5] gi|256960003|ref|ZP_05564174.1| DNA polymerase A [Enterococcus faecalis Merz96] gi|257077763|ref|ZP_05572124.1| DNA polymerase A [Enterococcus faecalis JH1] gi|257089289|ref|ZP_05583650.1| DNA polymerase I [Enterococcus faecalis CH188] gi|257418473|ref|ZP_05595467.1| DNA polymerase A [Enterococcus faecalis T11] gi|257421124|ref|ZP_05598114.1| DNA polymerase I [Enterococcus faecalis X98] gi|293383756|ref|ZP_06629663.1| DNA polymerase I [Enterococcus faecalis R712] gi|293388768|ref|ZP_06633261.1| DNA polymerase I [Enterococcus faecalis S613] gi|294781289|ref|ZP_06746635.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1] gi|307267954|ref|ZP_07549342.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248] gi|307278426|ref|ZP_07559501.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860] gi|307286686|ref|ZP_07566772.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109] gi|312901580|ref|ZP_07760853.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470] gi|312904438|ref|ZP_07763597.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635] gi|312907028|ref|ZP_07766024.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512] gi|312952854|ref|ZP_07771716.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102] gi|312978714|ref|ZP_07790441.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516] gi|29342923|gb|AAO80687.1| DNA polymerase I [Enterococcus faecalis V583] gi|227175871|gb|EEI56843.1| DNA polymerase I [Enterococcus faecalis HH22] gi|229306043|gb|EEN72039.1| DNA polymerase I [Enterococcus faecalis ATCC 29200] gi|255962348|gb|EET94824.1| DNA polymerase A [Enterococcus faecalis T1] gi|255966821|gb|EET97443.1| DNA polymerase A [Enterococcus faecalis T2] gi|256597275|gb|EEU16451.1| DNA polymerase A [Enterococcus faecalis ATCC 4200] gi|256947759|gb|EEU64391.1| DNA polymerase A [Enterococcus faecalis DS5] gi|256950499|gb|EEU67131.1| DNA polymerase A [Enterococcus faecalis Merz96] gi|256985793|gb|EEU73095.1| DNA polymerase A [Enterococcus faecalis JH1] gi|256998101|gb|EEU84621.1| DNA polymerase I [Enterococcus faecalis CH188] gi|257160301|gb|EEU90261.1| DNA polymerase A [Enterococcus faecalis T11] gi|257162948|gb|EEU92908.1| DNA polymerase I [Enterococcus faecalis X98] gi|291078832|gb|EFE16196.1| DNA polymerase I [Enterococcus faecalis R712] gi|291081925|gb|EFE18888.1| DNA polymerase I [Enterococcus faecalis S613] gi|294451625|gb|EFG20081.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1] gi|295113921|emb|CBL32558.1| DNA polymerase I [Enterococcus sp. 7L76] gi|306502164|gb|EFM71448.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109] gi|306504932|gb|EFM74127.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860] gi|306515595|gb|EFM84122.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248] gi|310627013|gb|EFQ10296.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512] gi|310629370|gb|EFQ12653.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102] gi|310632136|gb|EFQ15419.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635] gi|311288421|gb|EFQ66977.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516] gi|311291375|gb|EFQ69931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470] gi|315032493|gb|EFT44425.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0017] gi|315034273|gb|EFT46205.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0027] gi|315145154|gb|EFT89170.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2141] gi|315148036|gb|EFT92052.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4244] gi|315149639|gb|EFT93655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0012] gi|315152951|gb|EFT96967.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0031] gi|315155181|gb|EFT99197.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0043] gi|315157509|gb|EFU01526.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0312] gi|315163062|gb|EFU07079.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645] gi|315167987|gb|EFU12004.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1341] gi|315574209|gb|EFU86400.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B] gi|315577339|gb|EFU89530.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630] gi|315581648|gb|EFU93839.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A] gi|329577869|gb|EGG59290.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1467] Length = 882 Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 210/515 (40%), Positives = 303/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521 ++ K + L+RY M G D++L +Y+LD+ ++ DI +AQ + + Sbjct: 376 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 435 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +P D + H I L L +L + ++ +++ P+ ++ Sbjct: 436 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 492 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 MEITGI++D LK++ E S+ L +EE IY +GE+FNL+SPKQLG ILF K+ P Sbjct: 493 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 552 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG + T LEQ+ PI+ +IL +RQ++KI+STY + L I + ++HT Sbjct: 553 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 609 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+KIR AF+ LI S+DYSQIELR+LAH Sbjct: 610 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 669 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L + F DIH A +FGV E V+P MRR AK +NF I+YGIS + L+ Sbjct: 670 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ 729 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF ++PG+ +Y+E+ + GYVET++ RR + +INS ++ Sbjct: 730 NLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 789 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN PIQGSAADI + AMI + + L++ KL MLLQ+HDELVFEVPE E+ Sbjct: 790 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 849 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +Q++ ME A ++L VPL + W E Sbjct: 850 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 880 Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L LVDG+S +RAF+A L R +GL NAI F NM ++Q + + +H V Sbjct: 6 LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E Y +YKA R K P Q+P +R + G+ E+ +EADDII T Sbjct: 62 AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178 +K+ F V ++S D+DL QL + T + TVK E EH+ +K+ G+ P++ Sbjct: 122 LANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ IG KTA LL++YG++E + N +K+ K +EN++ E Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 A LS++L + + P+ + +E L E N +L+ F K ++F + + ++ T Sbjct: 242 QAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDIT 294 >gi|257083792|ref|ZP_05578153.1| DNA polymerase A [Enterococcus faecalis Fly1] gi|300859704|ref|ZP_07105792.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11] gi|256991822|gb|EEU79124.1| DNA polymerase A [Enterococcus faecalis Fly1] gi|300850522|gb|EFK78271.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11] Length = 848 Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 210/515 (40%), Positives = 303/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521 ++ K + L+RY M G D++L +Y+LD+ ++ DI +AQ + + Sbjct: 342 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 401 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +P D + H I L L +L + ++ +++ P+ ++ Sbjct: 402 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 458 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 MEITGI++D LK++ E S+ L +EE IY +GE+FNL+SPKQLG ILF K+ P Sbjct: 459 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 518 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG + T LEQ+ PI+ +IL +RQ++KI+STY + L I + ++HT Sbjct: 519 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 575 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+KIR AF+ LI S+DYSQIELR+LAH Sbjct: 576 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 635 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L + F DIH A +FGV E V+P MRR AK +NF I+YGIS + L+ Sbjct: 636 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ 695 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF ++PG+ +Y+E+ + GYVET++ RR + +INS ++ Sbjct: 696 NLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 755 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN PIQGSAADI + AMI + + L++ KL MLLQ+HDELVFEVPE E+ Sbjct: 756 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 815 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +Q++ ME A ++L VPL + W E Sbjct: 816 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 846 Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 148/264 (56%), Gaps = 9/264 (3%) Query: 33 LPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLL 92 + NAI F NM ++Q + + +H V FD TFR E Y +YKA R K P Sbjct: 1 MHTNAIYAFNNMFENVMQ----KEMPTHVLVAFDAGKTTFRTEFYSEYKAGRSKTPGEFK 56 Query: 93 PQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTT 152 Q+P +R + G+ E+ +EADDII T +K+ F V ++S D+DL QL + T Sbjct: 57 EQMPYIRELLEGLGVKYYELPNYEADDIIGTLANKVDKDEFDVVVLSGDRDLTQLATDTV 116 Query: 153 CLYDTVKE----EKIDIEHVIKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALL 207 + TVK E EH+ +K+ G+ P++++ ++ L GD+ DNIPG+ IG KTA L Sbjct: 117 KVDITVKGVSDIESYTPEHIAEKYDGLTPKQIIDMKGLAGDTSDNIPGVTKIGEKTAIKL 176 Query: 208 LQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDC 267 L++YG++E + N +K+ K +EN++ E A LS++L + + P+ + +E L E Sbjct: 177 LKQYGSVEGVYENIDEMKKSKMKENLINDKEQAFLSKRLATIEVNAPVEVNVEDLAYEGK 236 Query: 268 NGPRLISFLKALEFTKLINRVATT 291 N +L+ F K ++F + + ++ T Sbjct: 237 NLEKLVPFYKEMDFKQFLAKLDIT 260 >gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488] gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum] gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488] Length = 877 Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 194/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EE+ +++ ME A Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA 856 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 857 ----IELAVPLKVDYSYGPTW 873 Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKAYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 237 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDITFDI 304 >gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames] gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor'] gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus anthracis str. A2012] gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442] gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193] gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465] gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389] gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174] gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I] gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W] gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820] gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684] gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248] gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066] gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055] gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America USA6153] gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B] gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94] gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames] gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor'] gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193] gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442] gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389] gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465] gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174] gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I] gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W] gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820] gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684] gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248] Length = 877 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 194/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EE+ +++ ME A Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA 856 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 857 ----IELAVPLKVDYSYGPTW 873 Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 237 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDITFDI 304 >gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8] gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth polymerase 1 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8] Length = 834 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 179/411 (43%), Positives = 272/411 (66%), Gaps = 8/411 (1%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 EKLL +Y ++KP+ V++ ME TG+++D L+ +S E+++ + LEE ++ L+G FN Sbjct: 426 EKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPFN 485 Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 L+S QL +LF +L+ P+ KT KTG+ T+A LE + +PI++ IL+ R+L+K+K Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREA-HPIVEKILQHRELTKLK 544 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 +TY D LP+ ++ RT R+HT ++ +T TGRL+S +PNLQNIP++T LGQ+IRRAF++ Sbjct: 545 NTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEA 604 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 L++ DYSQIELR+LAH++ L +VF+ DIH A+ +FGV E V P MRR A Sbjct: 605 GWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAA 664 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 KT+NF ++YG+S RL+ +L IP EA +I+RYF FP + +IEKT R+ GYVET Sbjct: 665 KTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVET 724 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 +FGRR + ++N+ S+R ER A N P+QG+AAD+ + AM+ + L + + +ML Sbjct: 725 LFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLRE--MGARML 782 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LQ+HDEL+ E P+ + + +MEKA L VPL+V + + +W Sbjct: 783 LQVHDELLLEAPQARAEEVAALAKEAMEKAY----PLAVPLEVEVGMGEDW 829 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 112/286 (39%), Positives = 162/286 (56%), Gaps = 8/286 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L+ +++ Sbjct: 8 FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGYKAVF-- 64 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR+E Y YKA R PE QL L++ G +E+ G+EADD+ Sbjct: 65 --VVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDV 122 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 +AT AEKEG+ V I++ D+DL QLVS + + I E + +K+G+ PE+ V Sbjct: 123 LATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHP-EGHLITPEWLWEKYGLRPEQWV 181 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DN+PG+ GIG KTA LL+E+G+LEN+L N R+K + RE I + E Sbjct: 182 DFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDL 241 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 RLS +L +RTD+P+ + L D G R +FL+ LEF L++ Sbjct: 242 RLSLELSRVRTDLPLEVDLAQGREPDREGLR--AFLERLEFGSLLH 285 >gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str. 97-27] gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42] gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42] Length = 891 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|331701576|ref|YP_004398535.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929] gi|329128919|gb|AEB73472.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929] Length = 884 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 206/502 (41%), Positives = 312/502 (62%), Gaps = 14/502 (2%) Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK--EILKSRKSSIPIDK 532 L+R GI + + D++L+SY+L++ +S+D+ ++A Y K E + + + ID Sbjct: 388 LYRQGIELANVDFDMLLVSYLLNTTNNSNDVGTVAHLHGFYNVKTDEEVYGKGAKRHIDP 447 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 S + + H + I L + L +Y ++ + V++ MEI GI++D Sbjct: 448 QSPAFLA-HLVHKVKAIDALHDGMFKDLDAHNQSKLYWDIEIKIAFVLAHMEINGIKVDA 506 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 L+ + ++ + L +E+ I+ +GE+FN+ SPKQLG ILF KL+ P KTKTG + T Sbjct: 507 ATLEGMGSKFKERLAEIEQTIFQEAGEEFNIGSPKQLGKILFEKLRLPILKKTKTG-YST 565 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE++ D PI++N+L++RQ+SK++STY D L I+ +VHT Y T TGR Sbjct: 566 SVDVLEKL-APDAPIVQNVLDYRQISKLQSTYVDGLLKVIHPDDSKVHTRYLQTLTQTGR 624 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 L+S++PNLQNIP++++ G+ IR+AFI S P ++ S+DYSQIELR+LA I + F Sbjct: 625 LSSVDPNLQNIPVRSEEGRLIRQAFIPSHPGWQIFSSDYSQIELRVLASITDDQNMQDAF 684 Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 +N DIH A IFG+ + E+V+P++RR AK +NF I+YGIS F LA+ I R +A Sbjct: 685 KNGEDIHATTARRIFGLPSNEEVTPELRRQAKAVNFGIVYGISDFGLASNTGITRKQAHQ 744 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I+RYF +PG+ +Y E F R + YVETI RR + +INS ++R+ ER A+N Sbjct: 745 FIERYFEEYPGVKKYTEDIVEFARNHRYVETIAHRRRYLPDINSKSFNLRSFAERTAMNT 804 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI + AMI++ +++D K T+MLLQ+HDEL+FEVP+EE+ T Q+I M+ Sbjct: 805 PIQGSAADIIKIAMINMADAIKDMK--TRMLLQVHDELIFEVPDEELDTVKQLIPSVMDS 862 Query: 951 ACLPKINLRVPLKVNIKVSNNW 972 A I+L VPLKV W Sbjct: 863 A----IHLNVPLKVESHWGKTW 880 Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 96/291 (32%), Positives = 154/291 (52%), Gaps = 12/291 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKH---DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S ++AFYA K GL +AI GF ML K+L + + + V Sbjct: 5 LLLIDGNSIAFKAFYALYTAMDKFTNPSGLHTSAIYGFNRMLDKVLADEKPTDVL----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR ++Y DYK R K P L Q P ++ A GI E+ +EADDII T Sbjct: 61 AFDAGKTTFRTKMYADYKGGRAKTPTELSEQFPFLKELINARGISTYELPDYEADDIIGT 120 Query: 124 YTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178 AE+ G + V I++ D+DL QL S T + + K E +HV +K G+ P + Sbjct: 121 LAKKAEEAGDYQVVIVTGDRDLTQLTSDKTTVQVSKKGVTELETYTPKHVEEKLGVKPSQ 180 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DN PG+ +G KTA L+Q++G ++N+ N ++ KK +E+++ Sbjct: 181 IIEIKGLKGDNSDNYPGVEKVGDKTAVKLVQQFGTIDNLYQNIDQVSGKKLKEHLIHDQA 240 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A + L + D P+T+ L+ L + N +L F + + F + +++ Sbjct: 241 QAERAHTLATINRDAPVTVSLDQLKYQGDNIDKLTDFYERMGFKSFLAKLS 291 >gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus] Length = 834 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 179/411 (43%), Positives = 272/411 (66%), Gaps = 8/411 (1%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 EKLL +Y ++KP+ V++ ME TG+++D L+ +S E+++ + LEE ++ L+G FN Sbjct: 426 EKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPFN 485 Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 L+S QL +LF +L+ P+ KT KTG+ T+A LE + +PI++ IL+ R+L+K+K Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREA-HPIVEKILQHRELTKLK 544 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 +TY D LP+ ++ RT R+HT ++ +T TGRL+S +PNLQNIP++T LGQ+IRRAF++ Sbjct: 545 NTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEA 604 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 L++ DYSQIELR+LAH++ L +VF+ DIH A+ +FGV E V P MRR A Sbjct: 605 GWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAA 664 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 KT+NF ++YG+S RL+ +L IP EA+ +I+RYF FP + +IEKT R+ GYVET Sbjct: 665 KTVNFGVLYGMSAHRLSQELSIPYEEASAFIERYFQSFPKVRAWIEKTLEEGRKRGYVET 724 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 +FGRR + ++N+ S+R ER A N P+QG+AAD+ + AM+ + L ++ +ML Sbjct: 725 LFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRL--RQMGARML 782 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LQ+HDEL+ E P+ + + +MEKA L VPL+V + +W Sbjct: 783 LQVHDELLLEAPQARAEEVAALAKEAMEKA----YPLAVPLEVEAGIGEDW 829 Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 111/286 (38%), Positives = 161/286 (56%), Gaps = 8/286 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + L DG YR F+A L+ G PV A+ GF L K L+ +++ Sbjct: 8 FEPKGRVLLADGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGYKAVF-- 64 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A++FR+E Y YKA R PE QL L++ G +E+ G+EADD+ Sbjct: 65 --VVFDAKALSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDV 122 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 +AT AEKEG+ V I++ D+DL QLVS + + I E + +K+G+ PE+ V Sbjct: 123 LATLAKKAEKEGYEVRILTADRDLYQLVSDCVAVLHP-EGHLITPEWLWEKYGLRPEQWV 181 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DN+PG+ GIG KTA LL+E+G+LEN+L N R+K + RE I + E Sbjct: 182 DFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDL 241 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 RLS L +RTD+P+ + L D G R +FL+ LEF L++ Sbjct: 242 RLSLGLSRVRTDLPLEVDLAQGREPDREGLR--AFLERLEFGSLLH 285 >gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L] gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L] Length = 891 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTEEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108] gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102] gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108] gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102] Length = 877 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 677 KHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 856 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 857 ----IELAVPLKVDYSYGPTW 873 Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 237 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDITFDI 304 >gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987] gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987] Length = 877 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGREFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 856 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 857 ----IELAVPLKVDYSYGPTW 873 Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + E Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKEQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 237 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDITFDI 304 >gi|315171781|gb|EFU15798.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1342] Length = 882 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 210/515 (40%), Positives = 304/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521 ++ K + L+RY M G D++L +Y+LD+ ++ DI +AQ + + Sbjct: 376 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 435 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +P D + H I L L +L + ++ +++ P+ ++ Sbjct: 436 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 492 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 MEITGI++D LK++ E S+ L +EE IY +GE+FNL+SPKQLG ILF K+ P Sbjct: 493 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 552 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG + T LEQ+ PI+ +IL +RQ++KI+STY + L I + ++HT Sbjct: 553 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 609 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+KIR AF+ LI S+DYSQIELR+LAH Sbjct: 610 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 669 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L + F DIH A +FGV E V+P MRR AK +NF I+YGIS + L+ Sbjct: 670 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSP 729 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 +L I R +A YI YF ++PG+ +Y+E+ + GYVET++ RR + +INS ++ Sbjct: 730 KLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 789 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN PIQGSAADI + AMI + + L++ KL MLLQ+HDELVFEVPE E+ Sbjct: 790 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 849 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +Q++ ME A ++L VPL + W E Sbjct: 850 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 880 Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L LVDG+S +RAF+A L R +GL NAI F NM ++Q + + +H V Sbjct: 6 LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E Y +YKA R K P Q+P +R + G+ E+ +EADDII T Sbjct: 62 AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178 +K+ F V ++S D+DL QL + T + TVK E EH+ +K+ G+ P++ Sbjct: 122 LANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ IG KTA LL++YG++E + N +K+ K +EN++ E Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 A LS++L + + P+ + +E L E N +L+ F K ++F + + ++ T Sbjct: 242 QAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDIT 294 >gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925] gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925] Length = 881 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 198/535 (37%), Positives = 320/535 (59%), Gaps = 26/535 (4%) Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500 KN + L +KK FE+E+ KI H+IK ++L +Y I + F D + +Y+L + Sbjct: 369 KNENYDKYLELIKKLFEDENIKKISHDIKNIYVILRKYDIDAKNFSFDTKIAAYLLQPSK 428 Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 S + + I + LS E SD +E I+ + I +++ L+ ++ Sbjct: 429 SDYILRDIILEKLSINIHE--------------SD---EESKIKETYCIKEIYEKLQKEI 471 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 + ++ ++ P++ V++ ME G +ID+D L ++ + + +LE+ I++ + E Sbjct: 472 KSANMEELFYNVELPLVKVLASMECEGFKIDKDRLTEIGEKFKVKIETLEKEIHEFADED 531 Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 FN+ SPKQLG ILF KL P KTKTG + T A+ LE++ +PII I+E+RQ++K+ Sbjct: 532 FNIKSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEKLK-DSHPIISKIIEYRQITKL 589 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 STY + L H+ ++H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ F+ Sbjct: 590 DSTYVEGLK-HVIDEDGKIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFVPN 648 Query: 741 PTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 + +I SADYSQIELR+LAHIA L F++ DIH + A+E+F V+I++V+P MR Sbjct: 649 NEESVIFSADYSQIELRVLAHIANDEKLIDAFKHHKDIHTITASEVFKVHIDEVTPLMRS 708 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 +AK +NF I+YGI F L+ + + R EA +YI YF R+P + +YI++ + Q+G+V Sbjct: 709 NAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDTYFSRYPNVKKYIDEIISKAEQDGFV 768 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 TI R+ + E+ S +R+ ER A+N PIQGSAAD+ + AM+ V++ L L + Sbjct: 769 TTIMNRKRYIPEVQSRNKIVRSFGERLAMNTPIQGSAADVIKLAMVHVYEELIKRNLKST 828 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++LQ+HDEL+ V ++E+ Q++V ME +NL VPL+ ++ V W E Sbjct: 829 LILQVHDELILNVYKDELEEVKQMVVDKMEGV----MNLLVPLEADVNVGTTWYE 879 Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 121/299 (40%), Positives = 175/299 (58%), Gaps = 17/299 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L ++DG S +YRAF+A P L+ K +G+ NAI GF ML K+ KE I + Sbjct: 1 MNKE-RLLILDGHSLMYRAFFALPPLTNK-EGIHTNAIYGFIKMLLKM-----KEEIKPN 53 Query: 61 FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + V FD A TFR++ Y DYKA R K+P L Q P+V+ I EI GFEADD Sbjct: 54 YIVTAFDKKAPTFRHKEYEDYKAGRAKMPSELNEQFPIVKEILNKLAINIFEIDGFEADD 113 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175 +I T + AE++G V I++ DKD +QL + + K +E D +I+++ + Sbjct: 114 LIGTLSQFAEEKGIEVYIVTGDKDALQLATDNVKIVINKKGMSEKEIYDRNRMIEEYEVT 173 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P + + ++ L GD DNIPG+PGIG KTA L++EYG++EN+L N I KK ++N++E Sbjct: 174 PTQFIDVKGLMGDKSDNIPGVPGIGTKTAFKLIKEYGSIENVLENVENISGKKMKQNLIE 233 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINRVATT 291 Y E A S+KL + T+VPI I LE + + D G R ++L F LI +A++ Sbjct: 234 YREQAIFSKKLATICTNVPIEIDLEEIKSKENYDIEGVR--QLFESLGFKSLIQNIASS 290 >gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99] gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99] Length = 877 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 856 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 857 ----IELAVPLKVDYSYGPTW 873 Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREVLDAFNVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 237 ALMSKDLATIITDAPITVNVDDMEYKGYEANDVIPMFENLGFTSLLNKLGVTPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDITFDI 304 >gi|332653862|ref|ZP_08419606.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16] gi|332516948|gb|EGJ46553.1| DNA-directed DNA polymerase I [Ruminococcaceae bacterium D16] Length = 900 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 198/519 (38%), Positives = 303/519 (58%), Gaps = 20/519 (3%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H K + L GI +G D L +Y+L S+D+ + ++Y +E K Sbjct: 388 KVVHGAKELEKELMDQGIEPQGIRFDTELAAYLLSPTDGSYDLEKLG---ITYYNQEFAK 444 Query: 523 SRKSSIP--IDKIS--DSQVQEHA-----IENSNVILQLWLLLRPKLIVEKLLHVYERLD 573 +++ P D + DS+ Q + + +I L+ L +L KL +Y ++ Sbjct: 445 AKEYLTPGAFDSLFSLDSEGQSAGPMGAFLSHCALIDALYETLSQRLEELKLTQLYGEIE 504 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 P+ V+++ME +G+ +D+ L +++ + + IY+L+GE+FN++S +QLG IL Sbjct: 505 LPLCPVLAEMERSGVLVDRKALAAFGEALAQGIEKDQALIYELAGEEFNINSTQQLGKIL 564 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 F KL P KTKTG + T A+ LE++ G +PII+ IL++RQL+K+KSTYAD L I Sbjct: 565 FDKLGLPPVKKTKTG-YSTNAEVLEKLR-GKHPIIEAILDYRQLTKLKSTYADGLGKVIA 622 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753 R+HT + T TGRL+S EPNLQNIPI+T LG ++R F++ P K L+ ADYSQI Sbjct: 623 P-DGRIHTCFQNTVTATGRLSSTEPNLQNIPIRTQLGAQLREMFVAAPGKVLVDADYSQI 681 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELR+LAH+A + + F + DIH + A+++FGV ++V+PQMRR AK +NF I+YGIS Sbjct: 682 ELRLLAHMAGDQAMIEGFHSGADIHTITASQVFGVTPDQVTPQMRRSAKAVNFGIVYGIS 741 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 PF L+ + + +A +Y+ +YF + G+ Y++ +Q+GYV T+FGRR E+ Sbjct: 742 PFSLSQDIGVSVQQAKEYMDKYFAHYSGVRAYMDGVVEQGKQDGYVATLFGRRRWLPELK 801 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S + R+ ER A+N PIQG+AADI + AMI V L L +++LQ+HDEL+ E P Sbjct: 802 SSNFNTRSFGERVALNMPIQGTAADIIKLAMIRVRDRLLREGLEGRLVLQVHDELIVECP 861 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E E T +++ ME C L +PL W Sbjct: 862 EAEAETVCRLVKEEMEGVC----QLSIPLLAETHAGTTW 896 Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/294 (31%), Positives = 150/294 (51%), Gaps = 17/294 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DG+S + RAFY G P NAI GF N+L KLL +S +++ V FD Sbjct: 4 LMVLDGNSLVNRAFYGVSQNLTTRSGQPTNAIFGFLNILGKLLDDSNPDALC----VTFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ Y YKA R +P+ L Q+P+++ A IP E+ G+EADD++ T Sbjct: 60 RKAPTFRHLAYDGYKATRKGMPDELASQMPILKDVLSAMNIPIYEMDGWEADDLMGTIAA 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180 G+ +++ DKD +QLV+ T + + + E +++G P ++ Sbjct: 120 KDTAAGWDTIVVTGDKDSLQLVTDHTTVKLVSTRMGRTTTKDMTPEVFREEYGFDPIHII 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL-------INASRIKQKKRRENI 233 L+AL GD+ DNIPG+ G+G KTA L+ YG+++ + + + + + Sbjct: 180 DLKALMGDASDNIPGVKGVGEKTAMALVGRYGSIDALYEAMPTPEMAPGTPAKPGVIKKL 239 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 E E AR+S L +R D P+ E + ++ + RL LEF KLI++ Sbjct: 240 QEGEEMARMSYDLATIRCDAPLDFDPEQNLRKEVDNDRLYQLFLELEFAKLIDK 293 >gi|229546723|ref|ZP_04435448.1| DNA polymerase I [Enterococcus faecalis TX1322] gi|229308072|gb|EEN74059.1| DNA polymerase I [Enterococcus faecalis TX1322] Length = 837 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 210/515 (40%), Positives = 303/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521 ++ K + L+RY M G D++L +Y+LD+ ++ DI +AQ + + Sbjct: 331 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 390 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +P D + H I L L +L + ++ +++ P+ ++ Sbjct: 391 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 447 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 MEITGI++D LK++ E S+ L +EE IY +GE+FNL+SPKQLG ILF K+ P Sbjct: 448 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 507 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG + T LEQ+ PI+ +IL +RQ++KI+STY + L I + ++HT Sbjct: 508 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 564 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+KIR AF+ LI S+DYSQIELR+LAH Sbjct: 565 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 624 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L + F DIH A +FGV E V+P MRR AK +NF I+YGIS + L+ Sbjct: 625 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ 684 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF ++PG+ +Y+E+ + GYVET++ RR + +INS ++ Sbjct: 685 YLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 744 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN PIQGSAADI + AMI + + L++ KL MLLQ+HDELVFEVPE E+ Sbjct: 745 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 804 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +Q++ ME A ++L VPL + W E Sbjct: 805 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 835 Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 142/249 (57%), Gaps = 5/249 (2%) Query: 48 LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107 + +N ++ + +H V FD TFR E Y +YKA R K P Q+P +R + G+ Sbjct: 1 MFENVMQKEMPTHVLVAFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGV 60 Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKI 163 E+ +EADDII T +K+ F V ++S D+DL QL + T + TVK E Sbjct: 61 KYYELPNYEADDIIGTLANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESY 120 Query: 164 DIEHVIKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS 222 EH+ +K+ G+ P++++ ++ L GD+ DNIPG+ IG KTA LL++YG++E + N Sbjct: 121 TPEHIAEKYDGLTPKQIIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENID 180 Query: 223 RIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282 +K+ K +EN++ E A LS++L + + P+ + +E L E N +L+ F K ++F Sbjct: 181 EMKKSKMKENLINDKEQAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFK 240 Query: 283 KLINRVATT 291 + + ++ T Sbjct: 241 QFLAKLDIT 249 >gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] Length = 891 Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI ++G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P K+ Sbjct: 399 GIDIQGVDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELKV- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+E ++ GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMEDIVKDAKRKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI Q++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 176/308 (57%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYDNLDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + ++ ++L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVVPMFESLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020] Length = 877 Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 856 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 857 ----IELAVPLKVDYSYGPTW 873 Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 237 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDITFDI 304 >gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam] gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1] gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam] gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1] Length = 891 Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 KHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 891 Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 194/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EE+ +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 891 Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 194/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EE+ +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPQQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne] gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201] gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne] gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201] gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 891 Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 194/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EE+ +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 891 Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 194/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EE+ +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAREASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|315174878|gb|EFU18895.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1346] Length = 882 Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 210/515 (40%), Positives = 302/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521 ++ K + L+RY M G D++L +Y+LD+ ++ DI +AQ + + Sbjct: 376 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 435 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +P D + H I L L +L + ++ +++ P+ ++ Sbjct: 436 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 492 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 MEITGI++D LK++ E S+ L +EE IY +GE+FNL+SPKQLG ILF K+ P Sbjct: 493 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 552 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG + T LEQ+ PI+ +IL +RQ++KI+STY + L I + ++HT Sbjct: 553 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 609 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+KIR AF+ LI S+DYSQIELR+LAH Sbjct: 610 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 669 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L + F DIH A +FGV E V+P MRR AK +NF I+YGIS + L+ Sbjct: 670 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQ 729 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF ++PG+ +Y+E+ + GYVET++ RR + +INS ++ Sbjct: 730 NLGITREQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 789 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN PIQGSAADI + AMI + L++ KL MLLQ+HDELVFEVPE E+ Sbjct: 790 RSFAERTAINTPIQGSAADILKIAMIEMAHRLKEEKLQATMLLQVHDELVFEVPESELEQ 849 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +Q++ ME A ++L VPL + W E Sbjct: 850 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 880 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 104/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L LVDG+S +RAF+A L R +GL NAI F NM ++Q + + +H V Sbjct: 6 LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E Y +YKA R K P Q+P +R + G+ E+ +EADDII T Sbjct: 62 AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178 +K+ F V ++S D+DL QL + T + TVK E EH+ +K+ G+ P++ Sbjct: 122 LANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ IG KTA LL++YG++E + N +K+ K +EN++ E Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 A LS++L + + P+ + +E L E + +L+ F K ++F + + ++ T Sbjct: 242 QAFLSKRLATIEVNAPVEVNVEDLAYEGKDLEKLVPFYKEMDFKQFLAKLDIT 294 >gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3] gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3] Length = 891 Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P ++ Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEV- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLEKL-MDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY+ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMSDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIGKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELVVPLKVDYSYGPTW 887 Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++GF V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++ +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENIDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI] gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI] Length = 877 Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 309/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L + F Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVEAF 676 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 856 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 857 ----IELAVPLKVDYSYGPTW 873 Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 237 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDITFDI 304 >gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909] gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909] Length = 878 Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 196/528 (37%), Positives = 322/528 (60%), Gaps = 27/528 (5%) Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514 F +E K ++K ++ L G +RG D++L +Y+++ S++ +A +S Sbjct: 363 FLADEKIAKDIFDLKRSRVALMWQGFDLRGVAFDLLLATYIINPTNVSNEFKKVA---MS 419 Query: 515 YTRKEIL-------KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 Y ++L K K +I +SQ+ H+I+ + +L+L +L + L Sbjct: 420 YDYDDVLYDEEVYGKGAKRAIA----EESQIARHSIDIATAVLKLKETALEQLKEQDQLT 475 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++E ++ P+ DV+++ME G+ +D L ++ ++ + +LE IY+ +G FN++SPK Sbjct: 476 LFEEMEMPLADVLAEMEFNGMALDLKTLDEMGQDLKGRITALENEIYEHAGMSFNINSPK 535 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG++LF KL P KTKTG + T A LE+++ +PIIK+I+E+R L+K+ STY + Sbjct: 536 QLGEVLFDKLSLPVIKKTKTG-YSTNADVLEKLSDA-HPIIKSIMEYRTLTKLYSTYIEG 593 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +VHT ++ A T TGRL+S+EPNLQNIPI+ + G+ IR+AF+ P+++ Sbjct: 594 LKKACYS-DGKVHTIFNQALTQTGRLSSIEPNLQNIPIRLEEGRLIRKAFV--PSEEGWV 650 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 ++ ADYSQIELRILAHI+ L + F+ DIH+ A ++F V+ E+++ +RR AK I Sbjct: 651 ILGADYSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAI 710 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF IIYG+S F L+ L I + EA YI Y + GI++Y+E T + +GY T+F Sbjct: 711 NFGIIYGMSAFGLSENLNITQKEAKKYIDHYLETYSGINQYMEDTVKDAKFHGYATTLFN 770 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + E++ ++R ER A+NAPIQG+AADI ++AMI V ++++ ++ +++LLQ+ Sbjct: 771 RRRYIPELSQKNYALRQFGERTAMNAPIQGTAADIIKKAMIDVANAMKEKQVKSRLLLQV 830 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FEVP+EE+ +++ +ME + L+VPLK + W Sbjct: 831 HDELIFEVPQEELDLMIELVTKTMEDV----VKLQVPLKADYSYGPTW 874 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 111/329 (33%), Positives = 175/329 (53%), Gaps = 18/329 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 N L L+DG+S +YRA+YAT L + G+ NA+ GF NM+ K++ + +H Sbjct: 2 NTLVLIDGNSLMYRAYYATAYSGNLMKTSQGIFTNALYGFVNMMNKVMDDYHH----THM 57 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR+E YK R +P+ + Q+ L++ G+ +E+ +EADDII Sbjct: 58 LVAFDAGKTTFRHEFLETYKDGRKPMPDEMRSQINLIKKYLDLLGVKRLELPTYEADDII 117 Query: 122 ATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 T + EK F + II+ DKDL+Q+ T ++ T K E E V +K+ + P Sbjct: 118 GTLARLGEKADFEKIHIITGDKDLLQMADEKTTVHITRKGVTDIESFTPEAVFEKYELSP 177 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 ++V L+ L GD DN+PGIPG+G KTA LL+EY +EN++ N + +K K +E + Sbjct: 178 SQIVDLKGLMGDPSDNLPGIPGVGEKTAIKLLKEYQTVENLVANTASLK-GKMKEKVEAN 236 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 E A L +++ + TDVP+++ + L+ + + LI K +EF + ++ D Sbjct: 237 VEQALLCKRMATIHTDVPLSVTFDDLLYQGPDVAGLIELFKEMEFNAFLKKMKLQEVKDE 296 Query: 297 ANIEPVVL-----DINTTENKGIAIETEI 320 PV + ++NT K AI EI Sbjct: 297 TPKAPVAIIGSLEELNTKIFKHSAIHVEI 325 >gi|328945225|gb|EGG39379.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1087] Length = 880 Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 209/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRAKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ EH V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----EQEQLFEHLARKVQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + AE K L SL + IYDL+G+KFN++SPKQLG ILF + P Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQKFNINSPKQLGTILFEDMGLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENTGQTWYE 878 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 117/302 (38%), Positives = 166/302 (54%), Gaps = 19/302 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+ +N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD +TFR E+Y DYKA R K P+ QLP +R + GI ++ Sbjct: 57 ---PTHVLVAFDAGKMTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIKIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293 Query: 289 AT 290 T Sbjct: 294 GT 295 >gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271] gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271] Length = 891 Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 307/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P ++ Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEV- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLEKL-MDRHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QRDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLKRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPQEEIEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y DYK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGANVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIEQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|322386365|ref|ZP_08059995.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100] gi|321269589|gb|EFX52519.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100] Length = 880 Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 208/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRTKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILLTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ EH V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----EQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + AE K L SL + IYDL+G++FN++SPKQLG ILF + P Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-ASDGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878 Score = 189 bits (479), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 118/296 (39%), Positives = 163/296 (55%), Gaps = 19/296 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R Q GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHFYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQIEALSKFYDEMGFKQL 289 >gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300] gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300] Length = 907 Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 196/498 (39%), Positives = 299/498 (60%), Gaps = 37/498 (7%) Query: 481 ISMRG-----FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535 +S+RG +D +L++Y+LD ++ I +A+++L T E +R + Sbjct: 437 LSVRGTVVEPGDDPLLVAYLLDPANTNMPI--VAERYLRTTWPEDAATRAA--------- 485 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + +L L P L E +YE ++KP+ V+ +ME+ G+++D D L Sbjct: 486 ------------ITYRLLQDLPPHLD-EARRKLYEEVEKPLSAVLKRMEVRGVRLDSDYL 532 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTA 654 + +S ++ + +LE I+ L+G +F + S QL +L+ +L SG KTK TG+ T Sbjct: 533 RGLSEALAGRIATLEAEIHRLAGREFAIRSRDQLETVLYDELGLASGKKTKLTGKRSTAV 592 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE + ++PII +LE+R+L K++ TY D LPN +N RT R+HT +S + TGRL+ Sbjct: 593 SALEPLR-NEHPIIPALLEYRELEKLRGTYLDPLPNLVNPRTGRLHTTFSQTTAATGRLS 651 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 SL PNLQNIPI+++LG++IR+ FI+ LISADYSQIELR+LA IA + Q F Sbjct: 652 SLNPNLQNIPIRSELGREIRKGFIADEGYCLISADYSQIELRLLAAIADDPLMQQAFREG 711 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIHR AA++ G+ + ++P RR AKT+NF ++YG+S RL+ +L IP +EAA +I Sbjct: 712 ADIHRRTAAQVLGLAEDAITPNQRRAAKTVNFGVLYGMSAHRLSNELGIPYAEAAQFIDV 771 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF+ +PGI YIE+T +F R++GYVET++GRR + E+ S IR ER A N PIQG Sbjct: 772 YFNTYPGIRRYIERTLDFGREHGYVETLYGRRRYVPELKSQNRVIREAGERLAYNMPIQG 831 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AADI + AM+ + + L+ L ++LLQ+HDEL+ E P + + + ME+A Sbjct: 832 TAADIIKIAMVRLDQELD--ALGARLLLQVHDELLIEAPATQADRVAALTREVMEQAA-- 887 Query: 955 KINLRVPLKVNIKVSNNW 972 +L VPL V + NW Sbjct: 888 --HLSVPLAVEVGTGPNW 903 Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 96/257 (37%), Positives = 141/257 (54%), Gaps = 9/257 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG + YR+++A P L G +AI GF +L + + + I V+ Sbjct: 7 DTLVLIDGHALAYRSYFALPPLHNSR-GEATHAILGFLRHTLRLARQASNQVI-----VV 60 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD P TFR+ Y YK+ R + P L Q+ +R A G P +E GFEADD+I T Sbjct: 61 FDPPGGTFRHAQYGGYKSGRAQTPADLPAQINRIRDLVDALGWPRLEEPGFEADDVIGTL 120 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 T +AE +GF V I+++D+D QL+ + + + E V+ K+G+ + V +A Sbjct: 121 TKMAEGKGFQVRIVTSDRDAYQLLDEHVRVLAS-DFSLVGPEDVLAKYGVTVGQWVDYRA 179 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAETARL 242 LTGD+ DNIPG GIG KTAA LLQEYG L+ +L A ++ K RE +L Sbjct: 180 LTGDASDNIPGAKGIGPKTAARLLQEYGTLDAVLAAARAGTLEPKGTREKLLASEADVLF 239 Query: 243 SRKLVMLRTDVPITIPL 259 SR+L + TD+P+ + L Sbjct: 240 SRELSCMVTDLPLKVDL 256 >gi|328957053|ref|YP_004374439.1| DNA polymerase I [Carnobacterium sp. 17-4] gi|328673377|gb|AEB29423.1| DNA polymerase I [Carnobacterium sp. 17-4] Length = 887 Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 198/493 (40%), Positives = 306/493 (62%), Gaps = 15/493 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIA--QKWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543 DI+L SY+L++ +S D++ +A ++ + E + K K +IP +K + + +H Sbjct: 402 DILLASYLLNTKDNSKDLSEVATEHEYYEVSSDESVYGKGAKIAIPEEK---TIIYDHIA 458 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 I L L L + ++ ++ P+ V+++ME+TG++++ L ++ E + Sbjct: 459 RKIKAIRILSKQLGENLEKNEQTKLFNEMELPLSMVLAEMELTGVKVNDKRLMEMKEEFA 518 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 L +E+ +Y+L+GEKFNL+SPKQLG ILF K+ +P KTKTG + T LEQ+ Sbjct: 519 IRLTDIEQRVYELAGEKFNLNSPKQLGVILFEKMGYPVIKKTKTG-YSTAVDVLEQLRE- 576 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 PI+++IL++RQ++KI+STY + L I+K+T ++HT Y TGRL+S++PNLQNI Sbjct: 577 QAPIVEHILDYRQIAKIQSTYIEGLLKVIDKKTGKIHTRYMQTIAQTGRLSSVDPNLQNI 636 Query: 724 PIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 PI+ + G+KIR+AF+ S ++ ++DYSQIELR+L H++ L + F DIH A Sbjct: 637 PIRLEEGRKIRQAFVPSHEGWEIFASDYSQIELRVLGHVSDDKLLKEAFIEGQDIHSSTA 696 Query: 783 AEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 ++FG+ E+VS +MRR AK +NF I+YGIS + L+ L I R EA +I YF ++PG Sbjct: 697 MQVFGIGSPEEVSSEMRRRAKAVNFGIVYGISDYGLSQNLGISRKEAQHFIDTYFEKYPG 756 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E + G+VET+F RR + EINS ++R+ ER AIN PIQGSAADI + Sbjct: 757 VKTYMEDIVREAKDKGFVETLFQRRRYLPEINSRNFNLRSFAERTAINTPIQGSAADIIK 816 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI + + L++ + MLLQ+HDEL+FE P+EEI ++V ME A + L VP Sbjct: 817 IAMIKMDQKLKESTMKATMLLQVHDELIFEAPKEEIEQLRALVVEVMEGA----VELSVP 872 Query: 962 LKVNIKVSNNWQE 974 LKV+ +W E Sbjct: 873 LKVDSNSGKSWYE 885 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 170/303 (56%), Gaps = 12/303 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESI 57 M ++ L L+DG+S YRAF+A + L K+ +GL NA+ GF NM+ +L + Sbjct: 2 MSEKKKLVLIDGNSVAYRAFFALHSQLERMKNKNGLHTNALYGFHNMIDSVLTKEK---- 57 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+ + +YKA R K P Q+P +R FGI E++ FEA Sbjct: 58 PTHVLVAFDAGNTTFRHSFFDEYKAGRSKTPREFSEQMPYLRELLDGFGIRHYELENFEA 117 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T + + V +IS D+DL QL + TVK ++ E + ++ G Sbjct: 118 DDIIGTLATKVDPTIYDVVVISGDRDLTQLAKENVRVDITVKGVSELKEYTTESIYEEMG 177 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P +++ ++ L GD+ DNIPG+ IG KTA LL+EYG++E I N +K+ K +EN+ Sbjct: 178 ISPLQIIDMKGLAGDASDNIPGVTKIGEKTALKLLKEYGSVEGIYENIDLLKKSKMKENL 237 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT-Y 292 + ETA LS++L + TD PI I +E L N +LISF K ++F ++++ T Y Sbjct: 238 INEKETALLSKRLATIDTDSPIKISVEELSFNGPNMEKLISFYKEMDFNSHLSKLDTAEY 297 Query: 293 DCD 295 D + Sbjct: 298 DAE 300 >gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] Length = 899 Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 202/515 (39%), Positives = 318/515 (61%), Gaps = 12/515 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K GH++K L+L ++++G +D+ L+SY+L+ R H + ++++ L + Sbjct: 391 KGGHDLKVLSLLLGGMKLTLQGAHDDVELLSYLLNPSRREHALPDLSRERLGLELPALPA 450 Query: 523 SR--KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + K P+ + S +V ++ +L L +L L + ++ P++ ++ Sbjct: 451 TAEGKKGRPLVEHSAEEVAAAYGARADAARRLAPRLWEELEAIGLAALARDMELPLLPIL 510 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ++ME G+++D + K +S ++ + ++I+ L+G++FN+ S QL +L+ KL+ P Sbjct: 511 ARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEFNVGSNPQLAQVLYEKLQLP 570 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 K KTG +T Q++ + +P+ ILE+R LSK+KSTY D+LP + K R+H Sbjct: 571 ILKKGKTG--PSTDQEVLEKLAEQHPLPGAILEYRSLSKLKSTYLDTLPGLVAK-DGRIH 627 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T Y A+T TGRL+S +PNLQNIP++T+LG++IRRAF++ +L+SADYSQ+ELR+LAH Sbjct: 628 TTYHQAATATGRLSSSDPNLQNIPVRTELGREIRRAFVAEAGYQLVSADYSQVELRLLAH 687 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 IA+ L F++ DIH AAEIFGV +KV RR AKT+NF I YG+SP L+T+ Sbjct: 688 IAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVDRDQRRVAKTVNFGIAYGLSPHGLSTR 747 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I EA D I+RYF R+ GI Y+E T R+ GYVET+FGRR ++NS ++ Sbjct: 748 LSISVEEARDIIERYFTRYAGIRRYLEDTVERARKTGYVETMFGRRRLMADLNSKNRAVA 807 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ERAAIN PIQG+AAD+ ++AM++V ++L +LAT MLLQ+HDEL+FE PE E+ Sbjct: 808 QAAERAAINMPIQGTAADLIKKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDR- 866 Query: 941 SQIIVHSMEKACLPKI-NLRVPLKVNIKVSNNWQE 974 V ++ + C+ + L+VPLKV++ W + Sbjct: 867 ----VKALARQCMSSVATLKVPLKVDVGAGKTWAD 897 Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 106/282 (37%), Positives = 165/282 (58%), Gaps = 5/282 (1%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+D SSFI+RA++A P LS G+P NA+ GF M+ K S K+ +H A+ FD Sbjct: 12 LTLIDASSFIFRAYHAVPPLSTSK-GVPTNAVLGFTRMVLK----SLKDLEPTHIALAFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + R +I P+YKA+R PE L+PQ L+R +A +P +E+ G+EADD+I T Sbjct: 67 KDSRAERQKIDPNYKAHREGPPEDLVPQFALIRKVVEALNLPVLEVPGWEADDVIGTLAA 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A+ EGF V +++ DKD +Q+V L+D +K+ V ++ GI P +M +L Sbjct: 127 RAKAEGFCVQVVTGDKDFIQIVDEDVRLFDPMKDVHTGPAEVKERLGIEPRQMRDYLSLI 186 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+P +PGIG KTAA LLQ++G+++ +L +K+ K RE I + E+ +R+L Sbjct: 187 GDAVDNVPKVPGIGDKTAAALLQQFGDVDTMLARLDEVKKPKIREAISSHRESLLRARQL 246 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 V T + + + + LI + R LEF +L+N + Sbjct: 247 VTFNTQLDLKVTIPELIRRPIDNARARQLFTELEFFRLVNEL 288 >gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1] gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1] Length = 891 Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|327467325|gb|EGF12825.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK330] Length = 880 Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 209/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRTKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ EH V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----EQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + AE K L SL + IYDL+G++FN++SPKQLG ILF + P Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQAWYE 878 Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 119/302 (39%), Positives = 166/302 (54%), Gaps = 19/302 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R Q GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293 Query: 289 AT 290 T Sbjct: 294 GT 295 >gi|329121315|ref|ZP_08249941.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965] gi|327469724|gb|EGF15190.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965] Length = 857 Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 197/490 (40%), Positives = 306/490 (62%), Gaps = 20/490 (4%) Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545 F D+ L++Y+LD +++ + + + + + SI ID+ ++ +++ Sbjct: 385 FYDVTLIAYLLDPTHVTYNRSYVGELF-----------KVPSIYIDE--NASFEQNGNMI 431 Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 ++ +L L+ L+ + +++ +++P+I+V+++ME GI ID++ K+V + + Sbjct: 432 ADFLLALYTSSYELLVKNDIEKLFKEVEQPLIEVLAEMEKNGISIDEENWKKVRKNMKEK 491 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 L IY +GE+FN++SPKQL ILF K+ P+G KTKTG + T A LE + D Sbjct: 492 EEKLLLEIYREAGEEFNVNSPKQLSHILFDKMGMPTGKKTKTG-YSTAADVLENLAI-DY 549 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 P +KNILE+R L+K+ STY D++P + K T+RVHT ++ T TGRL+S +PNLQNIP+ Sbjct: 550 PFVKNILEYRTLAKLISTYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPNLQNIPV 609 Query: 726 KTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 +T+ G+ IR F+ IS+DYSQ+ELR+LAH++ L + FEN DIHR A+E Sbjct: 610 RTEEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTASE 669 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +FGV E+V+ + R HAK +NF IIYGIS F L+ QL I R +A +YIK Y R+PGIHE Sbjct: 670 VFGVPFEEVTSEQRSHAKAVNFGIIYGISDFGLSKQLGISRKKADEYIKTYLKRYPGIHE 729 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 +++K R+ G V+T+FGR +INS R+ ER A+N PIQGSAADI + AM Sbjct: 730 FMKKMTEEARKTGKVKTLFGRYRDLPDINSKNFQRRSFAERTAMNTPIQGSAADIMKIAM 789 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 I V+ ++ K +++LLQ+HDELV E +EE+ S+++ +ME ++L+V L Sbjct: 790 IQVYGKMKKGKYKSRILLQVHDELVIEAVKEEVEEISKLLKETMESV----VSLKVKLVA 845 Query: 965 NIKVSNNWQE 974 ++ V NW E Sbjct: 846 DVHVGKNWAE 855 Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 112/263 (42%), Positives = 155/263 (58%), Gaps = 12/263 (4%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + L ++DGSS YRAFYA PLLS H+G+ NA+ GF ML L +N E IA V Sbjct: 2 DKKLVIIDGSSLFYRAFYALPLLS--HNGIYTNAVYGFLRMLAGLYRNLDPEYIA----V 55 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRNEIY DYKA R P L+PQ L++ + G+ E+ G+E DDI+ T Sbjct: 56 AFDKDRYTFRNEIYKDYKATRKSAPAELVPQFKLIKDLLRVMGVAVYEMAGYEGDDILGT 115 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 + K+ F V I++ D+D +QL S ++ T K ++ V++K+GI P ++ Sbjct: 116 LAF-KYKDEFPVLIVTGDRDSLQLSSEKVTVFLTQKGISNMAEMTPSAVVQKYGIKPSQI 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DNIPG+ GIG KTA LLQ+Y NLENI N IK ++ + +L E Sbjct: 175 IDMKALMGDTSDNIPGVKGIGEKTAVKLLQKYENLENIYKNIEEIKGAQKTK-LLSGKED 233 Query: 240 ARLSRKLVMLRTDVPITIPLEHL 262 A LSR L +R D+PI LE + Sbjct: 234 AYLSRNLAKIRIDIPINATLEEM 256 >gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26] gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26] Length = 891 Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 399 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4] gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4] Length = 877 Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 198/528 (37%), Positives = 319/528 (60%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K++ N K + K + L G+ ++G + D+++ +Y+LD + D ++A+ Sbjct: 358 FKEWLANGEMRKHTFDAKRAIVALKWKGVDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 417 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P ++ V EH +V+ + +L + Sbjct: 418 KETHAVKSDEEVYGKGAKRAVPGLEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 473 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V++ ME+ G+++D + L+ + E++ L +E+ IY L+G +FN++SPK Sbjct: 474 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 533 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II NIL +RQL K+ STY + Sbjct: 534 QLGVILFEDLNLPVIKKTKTG-YSTSADVLDKL-MDRHEIIPNILHYRQLGKLNSTYIEG 591 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+++ Sbjct: 592 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 649 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIA L + F++ +DIH A ++FGV ++V+ MRR AK + Sbjct: 650 MYAADYSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 709 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R AA++I++Y FPG+ EY+++ +Q GYV T+ Sbjct: 710 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLN 769 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQGSAADI ++AMI + LE+ L ++LLQ+ Sbjct: 770 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 829 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE P+EEI +++ ME A I L VPLKV+ W Sbjct: 830 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 873 Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 111/308 (36%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y DYK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREVLDAFNVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++GF V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++ +E + N ++ KK +E + E Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKLEANKEQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S++L + TD PIT+ ++ + + LI + L FT L+N++ T + A A Sbjct: 237 ALMSKELATIITDAPITVHVDDMEYKGYEPSDLIPMFENLGFTSLLNKLGVTPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDITFDI 304 >gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814] gi|149754057|gb|EDM63988.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814] Length = 871 Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 178/420 (42%), Positives = 273/420 (65%), Gaps = 7/420 (1%) Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614 +LR KL K+ ++ ++ P++ + ME GI+++ D LKQ +++ + LE+ IY Sbjct: 457 VLRQKLRDTKMDTLFRDIEMPLVFTLFDMEQNGIRVEADALKQYGDQLAGKIAELEKEIY 516 Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674 + +GE FN++SPKQLG +LF +K P G KTKTG + T A LE++ ++P++ ILE+ Sbjct: 517 EEAGETFNINSPKQLGVVLFENMKLPGGRKTKTG-YSTAADVLEKL-APEHPVVAKILEY 574 Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734 RQ +K+KSTYAD L N+I + R+H ++ T TGR++S EPNLQNIP++ +LG+ IR Sbjct: 575 RQYTKLKSTYADGLANYI-QDDGRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIR 633 Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794 + FI + + ADYSQIELR+LAH + L Q ++ DIHR+ A+++F + ++V+ Sbjct: 634 KVFIPEEGYRFVDADYSQIELRVLAHCSGDEHLIQAYKEQSDIHRITASQVFHIPFDEVT 693 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 PQ RR+AK +NF I+YGIS F L+ L I R EAA YI YF +PGI +++ + Sbjct: 694 PQQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAKYIDDYFATYPGIKTFLDHAVTHAK 753 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 + GYV T+FGRR E++S R+ ER A+N+PIQG+AADI + AMI V++ L+D Sbjct: 754 EEGYVVTLFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGAAADIIKIAMIRVNQRLKDQ 813 Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 K+ ++++LQ+HDEL+ E E E+ I+ ME A L+VPL++++ +NW E Sbjct: 814 KMKSRLVLQVHDELLIEAYEPELDEVQNILKEEMEHAA----ELKVPLEIDMHTGDNWYE 869 Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 156/287 (54%), Gaps = 11/287 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ +GL NAI GF +++KLL+ + E + V FD Sbjct: 5 IVLIDGHSILNRAFYGLPDLTNA-EGLHTNAIYGFLTIMFKLLEEEKPE----YLTVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+++Y +YK R + + L Q+P+++ +A + IE G EADD+I T + Sbjct: 60 VHAPTFRHKMYAEYKGTRKPMADELRQQVPVIKEVLRAMRVKTIECAGLEADDLIGTLSN 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIE-----HVIKKWGIPPEKMV 180 E EG VT+IS D+DL+QL + + K+ K +IE V +++ + P++ + Sbjct: 120 RCENEGMEVTVISGDRDLLQLATEHVKIRIPKTKQGKTEIEDYYAKDVEERYQVTPKEFI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+AL GD+ DNIPG+P IG KTA ++ +Y ++E + +K + + + E+ + A Sbjct: 180 DLKALMGDTADNIPGVPSIGEKTATKIITQYHSIEEAHEHVDELKPPRASKALSEHWDLA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 LS++L + L L + F + LEF L++R Sbjct: 240 VLSKELATINVKADFPYELSEAKLGNLYTEEAYIFFQKLEFKNLLSR 286 >gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21] gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21] Length = 873 Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 205/499 (41%), Positives = 306/499 (61%), Gaps = 37/499 (7%) Query: 480 GISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538 G+S++G D L +Y+ + G + +D+ S+A+ +L + + ++ +P+ Sbjct: 406 GVSLQGVIGDPSLAAYLYEPGETHYDVKSLAETYLPASCGGTAQDVEALMPV-------- 457 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 L + L +Y ++ P+ V++ ME+ GI +D+ +L +V Sbjct: 458 -----------------LEGLMAERGLTELYRDIELPLTKVLANMEVNGITLDKGMLDEV 500 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 + ++K + LE+ + +GE FN++SPKQLG ILF KL P KTK+G + T LE Sbjct: 501 TKSMTKQVADLEQKAKEEAGEDFNVNSPKQLGVILFEKLGLPIIKKTKSG-YSTDVSVLE 559 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 Q+ G++PII+ I+E+R LSK+ STY +L IN T R+HT ++ +T+TGRL+S +P Sbjct: 560 QLQ-GEHPIIETIMEYRTLSKLLSTYLVALHPLINPNTGRIHTHFNQMATVTGRLSSTDP 618 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSL 775 NLQNIP +T++G+++RR F+ P K L+S DYSQ+ELR++A IA L F + Sbjct: 619 NLQNIPTRTEVGKQMRRMFV--PGKGYDLLMSCDYSQVELRVMASIAGDERLIDAFRHGQ 676 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+EIFGV IE V+P MR AKT+NF IIYGIS F L QL +PRSEAA YI Y Sbjct: 677 DIHSRTASEIFGVPIEDVTPFMRSKAKTVNFGIIYGISDFGLGRQLGVPRSEAAQYIDSY 736 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F R+ G+ EY+E K R+ GYVET+FGRR + +I++ + R+ ER AIN PIQG+ Sbjct: 737 FARYTGVKEYMEGEKKKAREMGYVETLFGRRRYLPDIHAKNFNRRSFAERTAINTPIQGT 796 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM+ V K L++ + +++LLQ+HDELV EV EEE S I+ ++ME+A Sbjct: 797 AADIIKIAMLHVAKELKEAGVKSRVLLQVHDELVLEVVEEEKDKVSAIVKNAMERA---- 852 Query: 956 INLRVPLKVNIKVSNNWQE 974 + L+VPL +I W + Sbjct: 853 VTLKVPLVADIAFGKTWAD 871 Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 104/292 (35%), Positives = 159/292 (54%), Gaps = 15/292 (5%) Query: 5 NHLFLV-DGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 N FL+ DGSS I+RAF+A P + K G+ A+ G CNML KLL+ + S+ AV Sbjct: 2 NETFLIIDGSSLIHRAFFALPSFTNKK-GVNTGAVYGLCNMLLKLLEEVK----PSYMAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD +FR E + DYK R P L Q PL + GIP +E+ +EADD+I T Sbjct: 57 AFDKSRHSFRTEKFADYKGQRKATPPELKEQFPLAIELLTSMGIPTLEMDNYEADDLIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178 + A KE V I++ D+D QL+ +Y T K D K++ G+ P + Sbjct: 117 LSATAPKE-MKVIIVTGDRDEFQLIKENVHVYFTKKGITQIGNYDEAAFQKEYEGLSPRQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ L+ L GD+ DNIPG+PG+G KTA L++EY ++E +L +A +K K +E ++ + Sbjct: 176 IIDLKGLMGDTSDNIPGVPGVGPKTALKLIKEYQSVEAVLDHAEEVKGKSLKEKLITFRN 235 Query: 239 TARLSRKLVMLRTDVPI-TIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A LS++L + VP+ T P + + R++ + L+F + NR + Sbjct: 236 QALLSKELATICLTVPMDTDPASYRLTGLTEKSRVL--MDDLQFKNMWNRFS 285 >gi|325689238|gb|EGD31244.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK115] Length = 880 Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 208/515 (40%), Positives = 309/515 (60%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRTKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ EH V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----EQEQLFEHLARKIQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + AE K L SL + IYDL+G++FN++SPKQLG ILF + P Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L ++ ++MLLQ+HDE+V EVP +E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTENNFKSRMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878 Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 167/303 (55%), Gaps = 19/303 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R + GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQIETLSKFYDEMGFKQLKAQL 293 Query: 289 ATT 291 T+ Sbjct: 294 GTS 296 >gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus] gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB] Length = 834 Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 179/411 (43%), Positives = 271/411 (65%), Gaps = 8/411 (1%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 EKLL +Y ++KP+ V++ ME TG++ D L+ +S E+++ + LEE ++ L+G FN Sbjct: 426 EKLLWLYHEVEKPLSRVLAHMEATGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPFN 485 Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 L+S QL +LF +L+ P+ KT KTG+ T+A LE + +PI++ IL+ R+L+K+K Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREA-HPIVEKILQHRELTKLK 544 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 +TY D LP+ ++ RT R+HT ++ +T TGRL+S +PNLQNIP++T LGQ+IRRAF++ Sbjct: 545 NTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEA 604 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 L++ DYSQIELR+LAH++ L +VF+ DIH A+ +FGV E V P MRR A Sbjct: 605 GWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAA 664 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 KT+NF ++YG+S RL+ +L IP EA +I+RYF FP + +IEKT R+ GYVET Sbjct: 665 KTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVET 724 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 +FGRR + ++N+ S+R ER A N P+QG+AAD+ + AM+ + L + + +ML Sbjct: 725 LFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLRE--MGARML 782 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LQ+HDEL+ E P+ + + +MEKA L VPL+V + + +W Sbjct: 783 LQVHDELLLEAPQARAEEVAALAKEAMEKAY----PLAVPLEVEVGMGEDW 829 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 112/286 (39%), Positives = 162/286 (56%), Gaps = 8/286 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L+ +++ Sbjct: 8 FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGYKAVF-- 64 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR+E Y YKA R PE QL L++ G +E+ G+EADD+ Sbjct: 65 --VVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDV 122 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 +AT AEKEG+ V I++ D+DL QLVS + + I E + +K+G+ PE+ V Sbjct: 123 LATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHP-EGHLITPEWLWEKYGLRPEQWV 181 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DN+PG+ GIG KTA LL+E+G+LEN+L N R+K + RE I + E Sbjct: 182 DFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDL 241 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 RLS +L +RTD+P+ + L D G R +FL+ LEF L++ Sbjct: 242 RLSLELSRVRTDLPLEVDLAQGREPDREGLR--AFLERLEFGSLLH 285 >gi|1097211|prf||2113329A DNA polymerase Length = 834 Score = 357 bits (916), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 179/411 (43%), Positives = 271/411 (65%), Gaps = 8/411 (1%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 EKLL +Y ++KP+ V++ ME TG++ D L+ +S E+++ + LEE ++ L+G FN Sbjct: 426 EKLLWLYHEVEKPLSRVLAHMEATGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPFN 485 Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 L+S QL +LF +L+ P+ KT KTG+ T+A LE + +PI++ IL+ R+L+K+K Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREA-HPIVEKILQHRELTKLK 544 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 +TY D LP+ ++ RT R+HT ++ +T TGRL+S +PNLQNIP++T LGQ+IRRAF++ Sbjct: 545 NTYVDPLPSLVHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEA 604 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 L++ DYSQIELR+LAH++ L +VF+ DIH A+ +FGV E V P MRR A Sbjct: 605 GWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAA 664 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 KT+NF ++YG+S RL+ +L IP EA +I+RYF FP + +IEKT R+ GYVET Sbjct: 665 KTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVET 724 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 +FGRR + ++N+ S+R ER A N P+QG+AAD+ + AM+ + L + + +ML Sbjct: 725 LFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLRE--MGARML 782 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LQ+HDEL+ E P+ + + +MEKA L VPL+V + + +W Sbjct: 783 LQVHDELLLEAPQARAEEVAALAKEAMEKAY----PLAVPLEVEVGMGEDW 829 Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 113/286 (39%), Positives = 162/286 (56%), Gaps = 8/286 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L+ +++ Sbjct: 8 FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGYKAVF-- 64 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR+E Y YKA R PE QL L++ G +E+ G+EADD+ Sbjct: 65 --VVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDV 122 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 +AT AEKEG+ V I++ D+DL QLVS + K I E + +K+G+ PE+ V Sbjct: 123 LATLAKKAEKEGYEVRILTADRDLYQLVSDRVAVLHP-KGHLITPEWLWEKYGLRPEQWV 181 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DN+PG+ GIG KTA LL+E+G+LEN+L N R+K + RE I + E Sbjct: 182 DFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDL 241 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 RLS +L +RTD+P+ + L D G R +FL+ LEF L++ Sbjct: 242 RLSLELSRVRTDLPLEVDLAQGREPDREGLR--AFLERLEFGSLLH 285 >gi|324991808|gb|EGC23733.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK405] Length = 880 Score = 357 bits (916), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 209/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRTKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ EH V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----EQEQLFEHLARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + AE K L SL + IYDL+G++FN++SPKQLG ILF + P Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878 Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 166/302 (54%), Gaps = 19/302 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R + GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIKIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293 Query: 289 AT 290 T Sbjct: 294 GT 295 >gi|755588|gb|AAA85558.1| DNA polymerase [Geobacillus stearothermophilus] Length = 954 Score = 357 bits (916), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 182/402 (45%), Positives = 270/402 (67%), Gaps = 7/402 (1%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 L+ + +++ ME TG+++D L+Q+ AE+++ L ++E IY+L+G++FN++SPKQLG Sbjct: 555 LEHALAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELAGQEFNINSPKQLGT 614 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 +LF KL+ P KTKTG + T+A LE++ + I+++IL +RQL K++STY + L Sbjct: 615 VLFDKLQLPVLKKTKTG-YSTSADVLEKL-APHHEIVEHILHYRQLGKLQSTYIEGLLKV 672 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750 ++ T +VHT ++ A T TGRL+S+EPNLQNIPI+ + G+KIR+AF+ S P + +ADY Sbjct: 673 VHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAADY 732 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELR+LAHIA+ L + F LDIH A +IF V+ E V+ MRR AK +NF I+Y Sbjct: 733 SQIELRVLAHIAEDDNLIEAFRRWLDIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVY 792 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 GIS + LA L I R EAA++I+RYF FPG+ +Y++ +Q GYV T+ RR + Sbjct: 793 GISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLP 852 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 +I S ++R ER A+N PIQGSAADI ++AMI + S+ + +L ++LLQ HDEL+ Sbjct: 853 DITSRNFNVRTFAERTAMNTPIQGSAADIIKKAMIDLSVSVREERLQARLLLQGHDELIL 912 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P+EEI +++ ME+A + LRVPLKV+ W Sbjct: 913 EAPKEEIGRLCRLVPEVMEQA----VTLRVPLKVDYHYGPTW 950 Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 121/297 (40%), Positives = 178/297 (59%), Gaps = 9/297 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M +N L L+DG+S YRAF+A PLL G+ NA+ GF ML K+L E +H Sbjct: 75 MMLKNKLVLIDGNSVAYRAFFALPLL-HNDKGIHTNAVYGFTMMLNKIL----AEEQPTH 129 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+E + DYK R + P L Q PLVR +A+ IPA E+ +EADDI Sbjct: 130 ILVAFDAGKTTFRHETFQDYKGGRQQTPPELSEQFPLVRELLKAYRIPAYELDHYEADDI 189 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T AE+EGFAV +IS D+DL QL SP + T K E E V++K+G+ P Sbjct: 190 IGTMAARAEREGFAVKVISGDRDLTQLASPQVTVEITKKGITDIESYTPETVVEKYGLTP 249 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E++V L+ L GD DNIPG+PGIG KTA LL+++G +EN+L + IK +K +EN+ +Y Sbjct: 250 EQIVDLKGLMGDKSDNIPGVPGIGKKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQY 309 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 + A LS++L + D P+ + L+ ++ + + ++++ + L F ++++A D Sbjct: 310 RDLALLSKQLAAICRDAPVELTLDDIVYKGEDREKVVALFQELGFQSFLDKMAVQTD 366 >gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621] gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621] Length = 891 Score = 357 bits (916), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 198/528 (37%), Positives = 319/528 (60%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K++ N K + K + L G+ ++G + D+++ +Y+LD + D ++A+ Sbjct: 372 FKEWLANGEMRKHTFDAKRAIVALKWKGVDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 431 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P ++ V EH +V+ + +L + Sbjct: 432 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 487 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V++ ME+ G+++D + L+ + E++ L +E+ IY L+G +FN++SPK Sbjct: 488 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 547 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II NIL +RQL K+ STY + Sbjct: 548 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MDRHEIIPNILHYRQLGKLNSTYIEG 605 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+++ Sbjct: 606 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 663 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIA L + F++ +DIH A ++FGV ++V+ MRR AK + Sbjct: 664 MYAADYSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 723 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R AA++I++Y FPG+ EY+++ +Q GYV T+ Sbjct: 724 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLN 783 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQGSAADI ++AMI + LE+ L ++LLQ+ Sbjct: 784 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 843 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE P+EEI +++ ME A I L VPLKV+ W Sbjct: 844 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 887 Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 111/308 (36%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y DYK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREVLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++GF V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++ +E + N ++ KK +E + E Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKLEANKEQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S++L + TD PIT+ ++ + + LI + L FT L+N++ T + A A Sbjct: 251 ALMSKELATIITDAPITVHVDDMEYKGYEPSDLIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97] gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187] gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97] gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187] Length = 877 Score = 357 bits (916), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 195/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI M+G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 385 GIDMQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 443 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 444 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 500 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 501 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 559 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 560 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 618 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L F Sbjct: 619 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 676 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 677 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 736 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 737 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 796 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 797 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 856 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 857 ----IELAVPLKVDYSYGPTW 873 Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 2 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 57 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 117 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 177 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 237 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 296 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 297 LDDITFDI 304 >gi|326803837|ref|YP_004321655.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a] gi|326651542|gb|AEA01725.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a] Length = 888 Score = 357 bits (916), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 187/526 (35%), Positives = 331/526 (62%), Gaps = 16/526 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 K + E+ H K+ ++ K +++L G+ + G +D+++ SY++ + S D+A++A++ Sbjct: 369 FKNWIEDPHAKKVLYDAKRSQVILKGLGMDLEGVSDDVLIASYLIHARDLSGDVANVARE 428 Query: 512 ----WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 +L+Y + K +K ++P DK +++ +H + +VI L +++ +L ++++ Sbjct: 429 FNLDYLAYDSEVYGKGKKVAVPEDK---TRLYDHLVAKVSVINDLLPIIKDRLEADEMVE 485 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +Y +++ P+ V+++MEI GI +D+ L +S + L L+E IY +G +FN++S + Sbjct: 486 LYRKIELPLAQVLAKMEIMGISVDRSRLVGLSQSYEEQLDQLQEEIYREAGVEFNINSTQ 545 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QL +LF + G KTK+G + T +LE++ PII IL +RQL+K++STY Sbjct: 546 QLSKVLFEDMGLKGGKKTKSGNYSTAQSELEKLQG--VPIIDLILAYRQLAKLQSTYVQG 603 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 + ++I++ +VH+ + T TGRL+S +PNLQNIPI+T+ G+KIR+AF+ S P + Sbjct: 604 ILDYIHQDG-KVHSRFIQTLTTTGRLSSADPNLQNIPIRTEEGRKIRQAFVPSHPDWVIF 662 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 S+DYSQIELR+LAH++ L + F+ + DIH AA++F + + +S RR AK +NF Sbjct: 663 SSDYSQIELRVLAHVSGDPHLQEAFKENKDIHTATAAKVFHKDEKDISKDERRQAKAVNF 722 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YGIS + L+ L I R EA +I +YF +P + EY++K+ R+ GY +T+F RR Sbjct: 723 GIVYGISDYGLSQNLSISRQEAKAFIDKYFEIYPKVAEYMDKSVEIAREAGYAKTLFNRR 782 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + ++ + ++R+ ER A+N+PIQG+AADI + AM+ + ++L++H+L +LLQ+HD Sbjct: 783 RYLPDLKAKNYNVRSFAERTAMNSPIQGTAADIIKVAMVEMDQALKEHQLQANLLLQVHD 842 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EL+FEV +E++ + ++ ME A ++L VPL V+ + W Sbjct: 843 ELIFEVAKEDLEDLAALVKDVMENA----VSLDVPLIVDSNYGSTW 884 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 105/303 (34%), Positives = 160/303 (52%), Gaps = 12/303 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 M K+ L L DGSS +RAF+A L+R + GL NA+ F ML +L+ + Sbjct: 1 MSKQEKLLLFDGSSLAFRAFFAMHDLNRFKNNKGLHTNALYAFHLMLTHVLEKEK----P 56 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 SH V +D TFR YP+YK R K P+ + Q+P AFGI E+ +EAD Sbjct: 57 SHALVAWDAGKTTFRTAYYPEYKGGRDKTPQEFVEQMPYFNKLLDAFGIAHYELANYEAD 116 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWG 173 DII T + + G V IIS DKDL+QL + D ++ +I + + G Sbjct: 117 DIIGTLSQRGAEAGMDVVIISGDKDLIQLARDQVRV-DINRKGVTNIDSYTPQSIQADQG 175 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I PE+++ ++ L GD+ DN PG+ GIG KTA L+QE+G++E + N ++ KKR+EN+ Sbjct: 176 ISPEQLIDVKGLMGDNSDNYPGVTGIGEKTALKLVQEFGSMEEVYANIDQVSGKKRKENL 235 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 ++ + A LS+KL + D P+ L L + L++F + + F + + + Sbjct: 236 VKDKDQAFLSKKLARIILDAPVEKSLADLKCQGIQAQDLVNFYREMNFKQFMEKFLANSG 295 Query: 294 CDA 296 DA Sbjct: 296 ADA 298 >gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] Length = 852 Score = 357 bits (915), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 202/515 (39%), Positives = 318/515 (61%), Gaps = 12/515 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K GH++K L+L ++++G +D+ L+SY+L+ R H + ++++ L + Sbjct: 344 KGGHDLKVLSLLLGGMKLTLQGAHDDVELLSYLLNPSRREHALPDLSRERLGLELPALPA 403 Query: 523 SR--KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + K P+ + S +V ++ +L L +L L + ++ P++ ++ Sbjct: 404 TAEGKKGRPLVEHSAEEVAAAYGARADAARRLAPRLWEELEAIGLAALARDMELPLLPIL 463 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ++ME G+++D + K +S ++ + ++I+ L+G++FN+ S QL +L+ KL+ P Sbjct: 464 ARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEFNVGSNPQLAQVLYEKLQLP 523 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 K KTG +T Q++ + +P+ ILE+R LSK+KSTY D+LP + K R+H Sbjct: 524 ILKKGKTG--PSTDQEVLEKLAEQHPLPGAILEYRSLSKLKSTYLDTLPGLVAK-DGRIH 580 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T Y A+T TGRL+S +PNLQNIP++T+LG++IRRAF++ +L+SADYSQ+ELR+LAH Sbjct: 581 TTYHQAATATGRLSSSDPNLQNIPVRTELGREIRRAFVAEAGYQLVSADYSQVELRLLAH 640 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 IA+ L F++ DIH AAEIFGV +KV RR AKT+NF I YG+SP L+T+ Sbjct: 641 IAEDPVLLDAFQHDEDIHSRTAAEIFGVTPDKVDRDQRRVAKTVNFGIAYGLSPHGLSTR 700 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I EA D I+RYF R+ GI Y+E T R+ GYVET+FGRR ++NS ++ Sbjct: 701 LSISVEEARDIIERYFTRYAGIRRYLEDTVERARKTGYVETMFGRRRLMADLNSKNRAVA 760 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ERAAIN PIQG+AAD+ ++AM++V ++L +LAT MLLQ+HDEL+FE PE E+ Sbjct: 761 QAAERAAINMPIQGTAADLIKKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDR- 819 Query: 941 SQIIVHSMEKACLPKI-NLRVPLKVNIKVSNNWQE 974 V ++ + C+ + L+VPLKV++ W + Sbjct: 820 ----VKALARQCMSSVATLKVPLKVDVGAGKTWAD 850 Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 139/241 (57%) Query: 48 LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107 ++ S K+ +H A+ FD + R +I P+YKA+R PE L+PQ L+R +A + Sbjct: 1 MVLKSLKDLEPTHIALAFDKDSRAERQKIDPNYKAHREGPPEDLVPQFALIRKVVEALNL 60 Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH 167 P +E+ G+EADD+I T A+ EGF V +++ DKD +Q+V L+D +K+ Sbjct: 61 PVLEVPGWEADDVIGTLAARAKAEGFCVQVVTGDKDFIQIVDEDVRLFDPMKDVHTGPAE 120 Query: 168 VIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 V ++ GI P +M +L GD++DN+P +PGIG KTAA LLQ++G+++ +L +K+ Sbjct: 121 VKERLGIEPRQMRDYLSLIGDAVDNVPKVPGIGDKTAAALLQQFGDVDTMLARLDEVKKP 180 Query: 228 KRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 K RE I + E+ +R+LV T + + + + LI + R LEF +L+N Sbjct: 181 KIREAISSHRESLLRARQLVTFNTQLDLKVTIPELIRRPIDNARARQLFTELEFFRLVNE 240 Query: 288 V 288 + Sbjct: 241 L 241 >gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737] Length = 830 Score = 357 bits (915), Expect = 7e-96, Method: Compositional matrix adjust. Identities = 208/543 (38%), Positives = 313/543 (57%), Gaps = 50/543 (9%) Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIML 491 VH ++D G KEI L K D VL R G + +D ML Sbjct: 330 VHRAEDPVGALKDLKEIRGLLAK----------------DLSVLALREGREIPPGDDPML 373 Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551 ++Y+LD G ++ + +A+++ + +E A + + + Sbjct: 374 LAYLLDPGNTNPE--GVARRY----------------------GGEWKEDAAARALLSER 409 Query: 552 LWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610 LW L P++ E +LL +Y +++P+ V++ ME TG+++D L+ +S E++ L LE Sbjct: 410 LWQALYPRVAEEERLLWLYREVERPLAQVLAHMEATGVRLDVPYLEALSQEVAFELERLE 469 Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIK 669 ++ L+G FNL+S QL +LF +L P KT KTG+ T+A LE + +PI+ Sbjct: 470 AEVHRLAGHPFNLNSRDQLERVLFDELGLPPIGKTEKTGKRSTSAAVLELLREA-HPIVG 528 Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729 ILE+R+L K+KSTY D LP ++ +T R+HT ++ +T TGRL+S +PNLQNIP++T L Sbjct: 529 RILEYRELMKLKSTYIDPLPRLVHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPL 588 Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789 GQ+IR+AFI+ L++ DYSQIELR+LAH++ L +VF DIH AA +FGV Sbjct: 589 GQRIRKAFIAEEGHLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETAAWMFGVP 648 Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849 E V MRR AKT+NF ++YG+S RL+ +L IP EAA +I+RYF FP + +I KT Sbjct: 649 PEGVDGAMRRAAKTVNFGVLYGMSAHRLSQELSIPYEEAAAFIERYFQSFPKVRAWIAKT 708 Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 R+ GYVET+FGRR + ++N+ S+R ER A N P+QG+AAD+ + AM+ + Sbjct: 709 LEEGRKKGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP 768 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 L L ++LLQ+HDELV E P+ A+Q+ +ME P L VPL+V + + Sbjct: 769 RL--RPLGVRILLQVHDELVLEAPKARAEEAAQLAKETME-GVYP---LSVPLEVEVGMG 822 Query: 970 NNW 972 +W Sbjct: 823 EDW 825 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 109/286 (38%), Positives = 162/286 (56%), Gaps = 9/286 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L+ + +I Sbjct: 5 FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGEVAI--- 60 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR+E Y YKA R PE QL L++ G+ +E+ GFEADD+ Sbjct: 61 --VVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGLVRLEVPGFEADDV 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 +AT AE+EG+ V I+S D+DL QL+S L + E + + +++G+ PE+ V Sbjct: 119 LATLAKKAEREGYEVRILSADRDLYQLLSDRIHLLHP-EGEVLTPGWLQERYGLSPERWV 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DN+PG+PGIG KTA LL+E+G+LE IL N ++K ++ RE I + Sbjct: 178 EYRALVGDPSDNLPGVPGIGEKTALKLLKEWGSLEAILKNLDQVKPERVREAIRNNLDKL 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 ++S +L LRTD+P+ + D G L +FL+ LEF L++ Sbjct: 238 QMSLELSRLRTDLPLEVDFAKRREPDWEG--LKAFLERLEFGSLLH 281 >gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363] gi|146345413|sp|O32801|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363] gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000] Length = 877 Score = 357 bits (915), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 200/492 (40%), Positives = 303/492 (61%), Gaps = 17/492 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543 D ML Y++ S + I++IA+ + L+ + K K ++P D+I + +H Sbjct: 396 DAMLAKYLI-STTEDNKISTIARLFDVGHLATDEEIFGKGTKLALPDDEI----LFDHLA 450 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 V+ + + +LI + H+ ++ P+ +V+++MEITGI + Q+ L+++ AE Sbjct: 451 RKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEIGAENE 510 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L SL IYDL+GE+FN++SPKQLG ILF KL+ P G KTKTG +TA D+ + Sbjct: 511 EKLASLTREIYDLAGEEFNINSPKQLGVILFEKLQLPVGKKTKTGY--STAVDVLEDLAA 568 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 +P++ ILE+RQ++K++STY L I ++HT Y T TGRL+S++PNLQNI Sbjct: 569 LSPVVAKILEYRQINKVQSTYVKGLIPQI-ADDGKIHTRYVQDLTQTGRLSSVDPNLQNI 627 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 P++ + G+KIR+AF+ L+S+DYSQIELR+LAHI+ L F++ DIH A Sbjct: 628 PVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAM 687 Query: 784 EIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +FG+ E V+ RR+AK +NF ++YGIS F LA L I R +A +YI+ YF R+PGI Sbjct: 688 RVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGI 747 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+E R G+VET+ RR +IN+ ++R ER AIN+PIQGSAADI + Sbjct: 748 KTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKI 807 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI++ K+L + + +K+LLQ+HDE++ +VP EE+ ++ +ME+A I L VPL Sbjct: 808 AMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEA----IELAVPL 863 Query: 963 KVNIKVSNNWQE 974 KV+ W E Sbjct: 864 KVDDNTGKTWYE 875 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 107/297 (36%), Positives = 166/297 (55%), Gaps = 13/297 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M+ +N L L+DGSS +RAF+A L R +GL NAI F ML L++ + Sbjct: 1 MEDKNRLLLIDGSSVAFRAFFALYNQLDRFKAPNGLHTNAIFAFHTMLSSLMERIQ---- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H + FD TFR E++ DYK R K P+ QLP ++ + GI E+ +EA Sbjct: 57 PTHVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEA 116 Query: 118 DDIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171 DDII T +AE F VTI++ DKD++QLV T + + K E+ +++++K Sbjct: 117 DDIIGTLDKMAEAPDVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEK 176 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 G+ P + + L+AL GDS DN PG+ +G KT LLQE+G+LEN+ N +K K ++ Sbjct: 177 MGLTPSQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVETLKASKMKD 236 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 N++ E A LS++L + T P+ I LE +L++ N L F + F++ +++ Sbjct: 237 NLIADKEMAFLSQQLATINTKAPLEIGLEDTLLKEKNVAELGQFYDEMGFSQFKSKL 293 >gi|242242956|ref|ZP_04797401.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] gi|242233557|gb|EES35869.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] Length = 876 Score = 356 bits (914), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 209/528 (39%), Positives = 317/528 (60%), Gaps = 21/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L ++ E+++ KI ++ K + HR GI++ E D+ML SY++D RS D+ S+ Sbjct: 358 LVRWLEDKNTTKIVYDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVKSVVGL 417 Query: 512 W-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + +Y + I K +K IP +S + EH + I + +++ +L + Sbjct: 418 YGQNYVKDNITVFGKGKKHHIP----EESILNEHIASVTEAISAVTPIMKSQLEDYNQIE 473 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + + L+ P+ ++S+ME GI D + LK++ EI K L L NI++ +GE FN++SPK Sbjct: 474 LLKDLELPLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSPK 533 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF L+ P KTKTG + T LE++ G++PII +ILE+RQLSK++STY + Sbjct: 534 QLGVVLFETLQLPVIKKTKTG-YSTAVDVLEKLQ-GEHPIIDDILEYRQLSKLQSTYVEG 591 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L I+K R+HT ++ TGRL+S++PNLQNIPI+ + G+KIR+AF PT K Sbjct: 592 LQKVISK-DHRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAF--KPTSKDSV 648 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 ++SADYSQIELR+LAHI + L F N DIH A ++F V ++V MRR AK + Sbjct: 649 ILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAV 708 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ + GYVET+ Sbjct: 709 NFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLH 768 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I S ++R+ ER A+N PIQGSAADI + AM+ + +++ K K+LLQ+ Sbjct: 769 RRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQV 828 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE+P+ E+ S+ + ME+A + L VPLKV+ W Sbjct: 829 HDELIFEIPKSEVEDFSKFVEEIMEQALV----LDVPLKVDSNYGATW 872 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 106/294 (36%), Positives = 160/294 (54%), Gaps = 15/294 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS H G+ NA+ GF +L K++ KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKII----KEEKTNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVI------KKWGIPPEK 178 + A++ F II+ D+DL QL + +Y T K+ D++H K G+ P++ Sbjct: 117 SRQADEADFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPEFIAEKYQGLVPKQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ ++E + + + KK +E ++ Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKA 235 Query: 239 TARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVAT 290 A +S+ L + PI + LE L L+D + I K LEF +L+ + T Sbjct: 236 DALMSKDLATINVHSPIEVSLEDTKLTLQDDTAEK-IELFKKLEFKQLLADIDT 288 >gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] Length = 882 Score = 356 bits (914), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 201/537 (37%), Positives = 329/537 (61%), Gaps = 18/537 (3%) Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504 +K+I+ L+ FE+E KIG++ K D ++L I ++ D M++ Y+LDS SS + Sbjct: 354 SKDIVEDLRALFEDEKIEKIGYDAKEDVIILLSKKIDLKNLTYDSMIVEYLLDSTASSFE 413 Query: 505 IASIAQKW--LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS-----NVILQLWLLLR 557 +I K+ SY ++ L + + K S S +++ + N +L + Sbjct: 414 FQNIISKYDLGSYKDEQSLLGK----GVKKKSYSDLEKDELFKYFSFILNGSFKLKEIQM 469 Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617 KL +++ +Y ++ P+++V++ ME+TGI+ + +L + + + +L +I+++S Sbjct: 470 EKLEELEMVDLYREIELPLLEVLAYMELTGIKTEVSVLDDIGKNLDDRIENLTSSIFEIS 529 Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677 GE+FN++S KQLG+ILF KL+ KTKTG +TAQD+ + ++PII+NILE+R+L Sbjct: 530 GEEFNINSTKQLGEILFDKLRLTVIKKTKTGY--STAQDVLEKLVDESPIIENILEYRKL 587 Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 +K+K+TY D L IN++T R+H+ ++ T TGR++S EPNLQNIPI+++ G+ IR AF Sbjct: 588 TKLKNTYIDGLKALINEKTGRIHSRFNQTGTSTGRISSTEPNLQNIPIRSEEGRLIRGAF 647 Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797 ++ L+ DYSQIELR+LA ++K + + FE+ +DIH A+E+F V+ E V+ + Sbjct: 648 LASEDSTLVDCDYSQIELRVLASLSKDPRMMEAFEHGMDIHTKTASEVFHVDKEDVTDLL 707 Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857 R AK +NF I+YGIS F L+ QL I R A +YI YF F + EY++ ++ G Sbjct: 708 RSRAKAVNFGIVYGISDFGLSRQLGITRELAKEYIDGYFDNFKKVKEYMDYEIETGKKQG 767 Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917 YV+TIF RR + E+++ +IR+ ER A+N PIQGSAADI + AM+ V+ ++ L Sbjct: 768 YVKTIFNRRRYIPELSAKNFNIRSFGERIALNTPIQGSAADIIKIAMVKVYGEIKKRNLK 827 Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +K++L IHDELV + +E+ +++ ME A + L VPLKV++ + E Sbjct: 828 SKLILTIHDELVVDAVNDELEVVEELMKDIMENA----VKLNVPLKVSLDTGKSMYE 880 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 106/290 (36%), Positives = 157/290 (54%), Gaps = 9/290 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N + ++DGSS +RAFYA PLL K G+ NAI GF M+ + N +H AV Sbjct: 2 NKILIIDGSSLFFRAFYALPLLKNKK-GMYTNAIYGFVMMVENAIDNIN----PTHVAVC 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E+Y DYK R K P L+ Q P + + I ++ +EADDI T Sbjct: 57 FDKKGRTFRHELYKDYKGTRKKTPSELMQQWPYIMDILKLMNIKTLDSPVYEADDIAGTI 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 + +A K F +++ DKD QLV + + T K ++ +++ ++G+ PE+ + Sbjct: 117 SKLAAKNDFESYLLTGDKDYFQLVDDKSTVLLTKKGITDLLEVTPKYLYDEYGLTPEEFI 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+AL GDS DNIPG+PG+G KT L++EY N+EN+ N + KK EN+ E A Sbjct: 177 DLKALMGDSSDNIPGVPGVGEKTGIKLIKEYKNIENLYQNLDEVSGKKLNENLTENKAQA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 +S+KL + T VP+ L+ E+ N L L+F L+ R+ T Sbjct: 237 FMSKKLGTIVTTVPLDYKLDDFKKEEYNYEELYKLYSELDFKTLLARLDT 286 >gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56] Length = 877 Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 202/492 (41%), Positives = 301/492 (61%), Gaps = 17/492 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEIL-KSRKSSIPIDKISDSQVQEHAI 543 D ML Y++ S + I++IA+ + S T +EI K K ++P D+ + EH Sbjct: 396 DAMLAKYLI-STTEDNKISTIARLFNSGHLATDEEIFGKGTKIALP----DDAVLFEHLA 450 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 V+ + +L+ + H+ ++ P+ +V+++MEITGI + Q+ L+++ AE Sbjct: 451 RKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENE 510 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L SL IYDL+GE+FN++SPKQLG ILF KL+ P G KTKTG +TA D+ + Sbjct: 511 EKLASLTREIYDLAGEEFNINSPKQLGVILFEKLQLPVGKKTKTGY--STAVDVLEDLAA 568 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 +P++ ILE+RQ++K++STY L I ++HT Y T TGRL+S++PNLQNI Sbjct: 569 LSPVVAKILEYRQINKVQSTYVKGLIPQI-ADDGKIHTRYVQDLTQTGRLSSVDPNLQNI 627 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 P++ + G+KIR+AF+ L+S+DYSQIELR+LAHI+ L F++ DIH A Sbjct: 628 PVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAM 687 Query: 784 EIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +FG+ E V+ RR+AK +NF ++YGIS F LA L I R +A +YI+ YF R+PGI Sbjct: 688 RVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGI 747 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+E R G+VET+ RR +IN+ ++R ER AIN+PIQGSAADI + Sbjct: 748 KTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKI 807 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI++ K+L +K+LLQ+HDE++ +VP EE+ ++ +ME+A I L VPL Sbjct: 808 AMINLDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKALVKQTMEEA----IELAVPL 863 Query: 963 KVNIKVSNNWQE 974 KV+ W E Sbjct: 864 KVDENTGKTWYE 875 Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 108/300 (36%), Positives = 164/300 (54%), Gaps = 19/300 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+ ++ L L+DGSS +RAF+A L + D GL NAI F ML L++ R Sbjct: 1 MENKDRLLLIDGSSVAFRAFFA---LYNQIDRFKAPNGLHTNAIFAFHTMLSSLME--RI 55 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 E +H + FD TFR E++ DYK R K P+ QLP ++ + GI E+ Sbjct: 56 EP--THVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELAN 113 Query: 115 FEADDIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AE F VTI++ DKD++QLV T + + K E+ +++ Sbjct: 114 YEADDIIGTLDKMAEAPIVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K G+ P + + L+AL GDS DN PG+ +G KT LLQE+G+LEN+ N +K K Sbjct: 174 LEKMGLTPAQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVDSLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ E A LS++L + T PI I L+ +L+ L F + F + +++ Sbjct: 234 MKENLIADKEMAFLSQQLATINTKAPIEIGLDDTLLKGKKVDELSQFYDEMGFAQFKSKL 293 >gi|319401005|gb|EFV89224.1| DNA polymerase I [Staphylococcus epidermidis FRI909] Length = 876 Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 209/528 (39%), Positives = 317/528 (60%), Gaps = 21/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L ++ E+++ KI ++ K + HR GI++ E D+ML SY++D RS D+ S+ Sbjct: 358 LVQWLEDKNTTKIVYDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVKSVVSL 417 Query: 512 W-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + +Y + I K +K IP +S + EH + I + +++ +L + Sbjct: 418 YGQNYVKDNITVFGKGKKHHIP----EESILNEHIASVTEAISAVTPIMKSQLEDYNQIE 473 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + + L+ P+ ++S+ME GI D + LK++ EI K L L NI++ +GE FN++SPK Sbjct: 474 LLKDLELPLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSPK 533 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF L+ P KTKTG + T LE++ G++PII +ILE+RQLSK++STY + Sbjct: 534 QLGVVLFETLQLPVIKKTKTG-YSTAVDVLEKLQ-GEHPIIDDILEYRQLSKLQSTYVEG 591 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L I+K R+HT ++ TGRL+S++PNLQNIPI+ + G+KIR+AF PT K Sbjct: 592 LQKVISK-DHRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAF--KPTSKDSV 648 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 ++SADYSQIELR+LAHI + L F N DIH A ++F V ++V MRR AK + Sbjct: 649 ILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAV 708 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ + GYVET+ Sbjct: 709 NFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLH 768 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I S ++R+ ER A+N PIQGSAADI + AM+ + +++ K K+LLQ+ Sbjct: 769 RRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQV 828 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE+P+ E+ S+ + ME+A + L VPLKV+ W Sbjct: 829 HDELIFEIPKSEVEDFSKFVEEIMEQALV----LDVPLKVDSNYGATW 872 Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 105/295 (35%), Positives = 162/295 (54%), Gaps = 15/295 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS H G+ NA+ GF +L K++ KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKII----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVI------KKWGIPPEK 178 + A++ F II+ D+DL QL + +Y T K+ D++H K G+ P++ Sbjct: 117 SRQADEADFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPEFIAEKYQGLVPKQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ ++E + + + KK +E ++ + Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKD 235 Query: 239 TARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVATT 291 A +S+ L + P+ + LE L L+D + I K LEF +L+ + T+ Sbjct: 236 DALMSKDLATINVHSPVEVSLEDTKLTLQDDTAEK-IELFKKLEFKQLLADIDTS 289 >gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147] gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147] Length = 877 Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 202/492 (41%), Positives = 301/492 (61%), Gaps = 17/492 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEIL-KSRKSSIPIDKISDSQVQEHAI 543 D ML Y++ S + I++IA+ + S T +EI K K ++P D+ + EH Sbjct: 396 DAMLAKYLI-STTEDNKISTIARLFNSGHLATDEEIFGKGTKIALP----DDAVLFEHLA 450 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 V+ + +L+ + H+ ++ P+ +V+++MEITGI + Q+ L+++ AE Sbjct: 451 RKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENE 510 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L SL IYDL+GE+FN++SPKQLG ILF KL+ P G KTKTG +TA D+ + Sbjct: 511 EKLASLTREIYDLAGEEFNINSPKQLGVILFEKLQLPVGKKTKTGY--STAVDVLEDLAA 568 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 +P++ ILE+RQ++K++STY L I ++HT Y T TGRL+S++PNLQNI Sbjct: 569 LSPVVAKILEYRQINKVQSTYVKGLIPQI-ADDGKIHTRYVQDLTQTGRLSSVDPNLQNI 627 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 P++ + G+KIR+AF+ L+S+DYSQIELR+LAHI+ L F++ DIH A Sbjct: 628 PVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAM 687 Query: 784 EIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +FG+ E V+ RR+AK +NF ++YGIS F LA L I R +A +YI+ YF R+PGI Sbjct: 688 RVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGI 747 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+E R G+VET+ RR +IN+ ++R ER AIN+PIQGSAADI + Sbjct: 748 KTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKI 807 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI++ K+L +K+LLQ+HDE++ +VP EE+ ++ +ME+A I L VPL Sbjct: 808 AMINLDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKALVKQTMEEA----IELAVPL 863 Query: 963 KVNIKVSNNWQE 974 KV+ W E Sbjct: 864 KVDENTGKTWYE 875 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 108/297 (36%), Positives = 164/297 (55%), Gaps = 13/297 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M+ N L L+DGSS +RAF+A ++R +GL NAI F ML L++ R E Sbjct: 1 MENNNRLLLIDGSSVAFRAFFALYNQIARFKAPNGLHTNAIFAFHTMLSSLME--RIEP- 57 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H + FD TFR E++ DYK R K P+ QLP ++ + GI E+ +EA Sbjct: 58 -THVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEA 116 Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171 DDII T +AE F VTI++ DKD++QLV T + + K E+ +++++K Sbjct: 117 DDIIGTLDKMAEAPNVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEK 176 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 G+ P + + L+AL GDS DN PG+ +G KT LLQE+G+LEN+ N +K K +E Sbjct: 177 MGLTPAQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVDSLKASKMKE 236 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 N++ E A LS++L + PI I L+ +L+D L F + F + +++ Sbjct: 237 NLIADKEMAFLSQQLATINIKAPIEIGLDDTLLKDKKIDELSQFYDEMGFAQFKSKL 293 >gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795] gi|164603147|gb|EDQ96612.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795] Length = 882 Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 195/549 (35%), Positives = 332/549 (60%), Gaps = 11/549 (2%) Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DI 489 L V S D + ++ L +K N K G+++K D ++L Y I + + DI Sbjct: 338 LYVFLSLDGNEIYYVNEDELPQIKTLLSNPEIKKHGYDLKEDYILLKPYEIELNSMDFDI 397 Query: 490 MLMSYVLDSGRS-SHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIEN 545 + Y++DS S S++ ++IA K+L+ +++++L + D+I ++ + + Sbjct: 398 TIAEYLIDSKSSTSYECSAIAMKYLTRKIKSKEDLLGKGAKAKKFDEIEFDELSAYIGDI 457 Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 N + ++L + KL ++ ++ ++ P+++V+ ME G+++D+D L ++ + + Sbjct: 458 LNTVNGVYLKMEEKLKETEMDGLFYHVEMPLVEVLGSMEYIGMKVDKDQLNELKEKFTTI 517 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 + LE I++L+GE FN++SPKQLG +LF KL P KTKTG + T A+ LE++ + Sbjct: 518 INELENEIFELAGEPFNINSPKQLGVVLFEKLGLPVIKKTKTG-YSTNAEVLEKLR-DKH 575 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 II I E+RQ+ K+ STY + L IN +T R+H+ ++ T TGR++S EPN+QNIP+ Sbjct: 576 EIIDKITEYRQIVKLNSTYVEGLLKIINPKTGRIHSSFNQTITTTGRISSTEPNMQNIPV 635 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 KT++G+ IR+ F++ KL+ ADYSQ+ELR+LAH++ + F++ DIH A++I Sbjct: 636 KTEMGRDIRKVFVADENCKLVDADYSQVELRVLAHMSGDENMIDAFKHGEDIHSKTASQI 695 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 F V+I+ V+ + R AK INF IIYG + F L+ L IP + A YI YF+++P I E+ Sbjct: 696 FDVDIKDVTSKQRIEAKAINFGIIYGKTDFGLSQDLNIPVATAKAYIDSYFNKYPKIKEF 755 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 +++ + GY TI RR + EI + +RN +R A+NAPIQGSAADI + AM+ Sbjct: 756 MDEAVESATETGYATTILNRRRYIPEIKASNFIVRNQGKRFAMNAPIQGSAADIIKVAMV 815 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 +V+ L+++ + +K++LQ+HDEL+ E +EE+ A +I+ ME A ++ V L V+ Sbjct: 816 NVYNKLKENNMKSKLILQVHDELIVEAVDEELEMAEKIVREEMENAQ----SMDVKLDVD 871 Query: 966 IKVSNNWQE 974 + ++W E Sbjct: 872 LNTGDSWYE 880 Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 107/289 (37%), Positives = 170/289 (58%), Gaps = 10/289 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E L ++DG+S I RAFYA P +S +GL NAI GF M++K++++ + +H +V Sbjct: 2 EKRLIIIDGNSIINRAFYALPDMSN-SEGLKTNAIFGFVRMMFKIIEDYQ----PTHMSV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A TFR++ Y DYKA R K+P+ L QL ++ F I +E++G+EADD+I T Sbjct: 57 AFDKKAPTFRHKQYADYKAGRKKMPDELAQQLQPLKDLLDKFNINRLELEGYEADDLIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 + E+ F V I++ DKD +QL S T T K E+ + + V++++ + P + Sbjct: 117 VARLGEENDFKVYIVTGDKDAIQLASHKTTTLITKKGVGEVEEYNYDSVLERYEMTPTQF 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+ L GD DNIPG+PG+G KT LL++Y +EN++ + +K +++ I E E Sbjct: 177 IDLKGLMGDKSDNIPGVPGVGEKTGIKLLKQYSTIENLIEHTDELKGSIKKK-IEENKEL 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 A +S++L + T+VPI + LE L D N ++ K FT LI ++ Sbjct: 236 ALMSKELATIITNVPIEVKLEDLAYGDYNKDDVVEKFKEFGFTSLITKL 284 >gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7] Length = 877 Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 190/494 (38%), Positives = 304/494 (61%), Gaps = 12/494 (2%) Query: 485 GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEH 541 G D + +Y+++ + S+ IAQ +L T R + LK + +K +S H Sbjct: 390 GIFDAAIAAYLINPLKDSYTYDGIAQDFLGMTVPSRADWLKKMTLTEASEKEKESF--GH 447 Query: 542 AIENSNVI-LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 + S +I +Q + L+ +L + +++ ++ P++ + ME GI +++D L + + Sbjct: 448 YLAYSAMIPVQAYSTLKKRLEETGMDRLFDEIEMPLVYALYDMEKAGIAVEKDALAEYGS 507 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 ++ + LE+NIY+L+GE FN++SPKQLG ILF KL P KTKTG + T+A LE++ Sbjct: 508 RLTGRIDELEKNIYELAGESFNINSPKQLGIILFEKLGLPFAKKTKTG-YSTSADILEKL 566 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 D PI+ ILE+RQL+K+KSTYAD L +I QR+H ++ T TGR++S EPNL Sbjct: 567 RTYD-PIVGQILEYRQLTKLKSTYADGLAGYIRPDDQRIHGKFNQTITATGRISSTEPNL 625 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIP++ +LG+ IR+ F+ ++ADYSQIELR+LAH+A L Q ++ + DIHRM Sbjct: 626 QNIPVRMELGRLIRKVFVPKEDCIFVNADYSQIELRVLAHMAGDEHLIQAYKEAQDIHRM 685 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A+++F ++V+P R +AK +NF I+YGIS F L+ L I + EA +YI++YF +P Sbjct: 686 TASQVFHTPFDEVTPAQRSNAKAVNFGIVYGISSFGLSQDLSITKKEAENYIQQYFRTYP 745 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 GI +++++ ++ GY T+FGRR E+ S R+ ER A+N+PIQG+AADI Sbjct: 746 GIKAFLDRSVEDAKEKGYAVTLFGRRRPVPELLSSNFMQRSFGERIAMNSPIQGTAADII 805 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 + AM+ V++ L+ + ++++LQIHDEL+ E +E+ I+ ME A L V Sbjct: 806 KIAMVRVNRRLKRQHMKSRLILQIHDELLIEAVLDEVDAVKAILKEEMEHAA----TLAV 861 Query: 961 PLKVNIKVSNNWQE 974 PL++++ +NW E Sbjct: 862 PLEIDMHTGHNWYE 875 Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 165/288 (57%), Gaps = 13/288 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RA+Y PLLS +GL NA+ GF N+++K+L + A + AV FD Sbjct: 4 VILIDGHSILNRAYYGIPLLSNA-EGLHTNAVYGFLNIMFKILDEEK----ADYLAVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+E++ YK R +PE L Q+P+++ A IP +E G+EADDI+ T Sbjct: 59 VHAPTFRHEMFEAYKGTRKPMPEELREQVPVIKEVLHAMQIPTLEHAGYEADDILGTLGK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 E G+AV+IIS D+DL+QL + P T + T E+ + V +K+ + P + Sbjct: 119 AYEAAGYAVSIISGDRDLLQLATDKIKIRIPKTKMSGTEIEDYYAAD-VFEKYQVTPTEF 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DNIPG+PGIG KTA+ ++ + ++E +A+ +K KK EN++ Y E Sbjct: 178 IDMKALMGDTSDNIPGVPGIGEKTASKIISTWHSIEEAHAHAAELKPKKASENLVTYYEQ 237 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 A+ S+ L ++TD + LE + + LK LE ++ R Sbjct: 238 AQFSKVLATIKTDCVLDFKLEDAAIGQMMNDASYALLKRLELKNILKR 285 >gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048] gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048] Length = 891 Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 198/528 (37%), Positives = 318/528 (60%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K++ N K + K + L G+ ++G + D+++ +Y+LD + D ++A+ Sbjct: 372 FKEWLANGEMRKHTFDAKRAIVALKWKGVDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 431 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P ++ V EH +V+ + +L + Sbjct: 432 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 487 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V++ ME+ G+++D + L+ + E++ L +E+ IY L+G +FN++SPK Sbjct: 488 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 547 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II NIL +RQL K+ STY + Sbjct: 548 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MDRHEIIPNILHYRQLGKLNSTYIEG 605 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+++ Sbjct: 606 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 663 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIA L + F + +DIH A ++FGV ++V+ MRR AK + Sbjct: 664 MYAADYSQIELRVLAHIANDPGLVEAFRHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 723 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R AA++I++Y FPG+ EY+++ +Q GYV T+ Sbjct: 724 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLN 783 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQGSAADI ++AMI + LE+ L ++LLQ+ Sbjct: 784 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 843 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE P+EEI +++ ME A I L VPLKV+ W Sbjct: 844 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 887 Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 111/308 (36%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y DYK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREVLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++GF V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++ +E + N ++ KK +E + E Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKLEANKEQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S++L + TD PIT+ ++ + + LI + L FT L+N++ T + A A Sbjct: 251 ALMSKELATIITDAPITVHVDDMEYKGYEPSDLIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273] gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272] gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272] gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273] Length = 891 Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 198/528 (37%), Positives = 317/528 (60%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K + N K + K + L G+ ++G + D+++ +Y+LD + D ++A+ Sbjct: 372 FKAWLANAEMRKHTFDAKRAIVALKWKGVDIQGIDFDLLIAAYLLDPADTDKDFRAVAKM 431 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P + V EH +V+ + +L + Sbjct: 432 KETHAVKSDEEVYGKGAKRAVPELDV----VAEHVARKVHVLYDVKQTFIEELKKNEQYE 487 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V++ ME+ G+++D + L+ + E++ L +E+ IY L+G +FN++SPK Sbjct: 488 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 547 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II NIL +RQL K+ STY + Sbjct: 548 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEG 605 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+++ Sbjct: 606 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 663 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIA L + F++ +DIH A ++FGV ++V+ MRR AK + Sbjct: 664 MYAADYSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 723 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R AA++I++Y FPG+ EY+++ +Q GYV T+ Sbjct: 724 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLN 783 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQGSAADI ++AMI + LE+ L ++LLQ+ Sbjct: 784 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAMIIMADRLEEEGLQARLLLQV 843 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE P+EEI +++ ME A I L VPLKV+ W Sbjct: 844 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 887 Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y DYK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSDYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGAYVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++ +E + N ++ KK +E + E Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENLDQVSGKKLKEKLEANKEQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S++L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKELATIITDAPITVHVDDMAYKGYEPIDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|57867172|ref|YP_188827.1| DNA polymerase I [Staphylococcus epidermidis RP62A] gi|251811085|ref|ZP_04825558.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060] gi|282875888|ref|ZP_06284755.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135] gi|57637830|gb|AAW54618.1| DNA polymerase I [Staphylococcus epidermidis RP62A] gi|251805382|gb|EES58039.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060] gi|281294913|gb|EFA87440.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135] Length = 876 Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 208/529 (39%), Positives = 317/529 (59%), Gaps = 21/529 (3%) Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510 +L ++ E+++ KI ++ K + HR GI++ E D+ML SY++D RS D+ S+ Sbjct: 357 HLVQWLEDKNTTKIVYDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVKSVVS 416 Query: 511 KW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + +Y + I K +K IP + I + EH + I + ++ +L + Sbjct: 417 LYGQNYVKDNITIFGKGKKHHIPEEPI----LNEHIASVTEAIAAVTPTMKSQLEDYNQI 472 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 + + L+ P+ ++S+ME GI D + LK++ EI K L L NI++ +GE FN++SP Sbjct: 473 ELLKDLELPLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSP 532 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG +LF L+ P KTKTG + T LE++ G++PII +ILE+RQL+K++STY + Sbjct: 533 KQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEKLQ-GEHPIIDDILEYRQLAKLQSTYVE 590 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L I+K R+HT ++ TGRL+S++PNLQNIPI+ + G+KIR+AF PT K Sbjct: 591 GLQKVISK-DHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAF--KPTSKDS 647 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 ++SADYSQIELR+LAHI + L F N DIH A ++F V ++V MRR AK Sbjct: 648 VILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKA 707 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ + GYVET+ Sbjct: 708 VNFGIVYGISDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLL 767 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I S ++R+ ER A+N PIQGSAADI + AM+ + +++ K K+LLQ Sbjct: 768 HRRRYIPDITSRNVNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQ 827 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE+P+ E+ S+ + ME+A + L VPLKV+ W Sbjct: 828 VHDELIFEIPKSEVEDFSKFVEEIMEQALV----LDVPLKVDSNYGATW 872 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 107/295 (36%), Positives = 164/295 (55%), Gaps = 15/295 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS H G+ NA+ GF +L K++ KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKII----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178 + A++E F II+ D+DL QL + +Y T K+ D++H K+ G+ P++ Sbjct: 117 SRQADEEDFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPKFIAEKYNGLVPKQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ ++E + + + KK +E ++ + Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKD 235 Query: 239 TARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVATT 291 A +S+ L + PI + LE L L+D + I K LEF +L+ + T+ Sbjct: 236 DALMSKDLATINVHSPIEVSLEDTKLTLQDDTTEK-IELFKKLEFKQLLADIDTS 289 >gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300] gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300] Length = 876 Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 210/528 (39%), Positives = 308/528 (58%), Gaps = 21/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L ++ EN+ K ++ K HR I ++ DIML SY+LD RS D+ S+ Sbjct: 358 LVEWLENDQTRKRVYDAKKTYAEAHRLNIDIKNVSFDIMLASYILDPSRSIDDVYSVVHN 417 Query: 512 W-LSYTRKEI---LKSRKSSIPIDKISDSQVQE--HAIENSNVILQLWLLLRPKLIVEKL 565 + +Y +E+ K RK IP D++ D+ + AI S I+ +L Sbjct: 418 YGQNYVAEEVNIYGKGRKRQIPEDEVLDTYIASILDAISESTPIM------YDQLEEFNQ 471 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 L ++E L+ P+ ++ +ME GI D D LK++ EI L +L I+D +GE FN++S Sbjct: 472 LDLFESLELPLARILGEMEELGIYTDVDELKEMEKEIQGKLDTLITRIHDAAGEDFNINS 531 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQLG +LF LK P KTKTG + T LEQ+ G++PII +ILE+RQLSK++STY Sbjct: 532 PKQLGVVLFENLKLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDDILEYRQLSKLQSTYI 589 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 + L I + R+HT ++ TGRL+S++PNLQNIP++ + G++IR+AF + P Sbjct: 590 EGLQKVI-QNDHRIHTHFNQTLAQTGRLSSVDPNLQNIPVRLEEGRRIRKAFKPAEPGNV 648 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 ++SADYSQIELR+LAHI + + + F DIH A ++FGV ++V MRR AK + Sbjct: 649 ILSADYSQIELRVLAHITQDESMIKAFREGHDIHTATAMKVFGVEPDEVDSLMRRQAKAV 708 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R A +I Y FPG+ +Y+ + GYVET+ Sbjct: 709 NFGIVYGISDYGLSQSLGITRKAAKQFIDDYLDSFPGVKQYMSDIVKDAKAKGYVETLLH 768 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I S + R+ ER A+N PIQGSAADI + AM++ K +++ +LLQ+ Sbjct: 769 RRRYIPDITSRNFNRRSFAERTAMNTPIQGSAADIIKLAMVNFDKEIKNKDFHAHLLLQV 828 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE+PEEE+ S I M+ A I+L VPL+V+ W Sbjct: 829 HDELIFELPEEEVEAFSAFIEDIMDNA----IDLDVPLQVDTNYGPTW 872 Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 104/289 (35%), Positives = 165/289 (57%), Gaps = 13/289 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S +RAFYA PLL+ + G+ NA+ GF +L K+ +KE ++F V FD Sbjct: 4 LVLIDGNSLSFRAFYALPLLTNRA-GIHTNAVYGFAMLLEKI----KKEEQPTNFLVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E + DYK R K P L Q PL+R A+ I E++ +EADDII T + Sbjct: 59 AGKTTFRHETFGDYKGGRQKTPPELSEQFPLIRQLLDAYQIKHYELENYEADDIIGTLSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEKMV 180 A+K G I++ D+DL QL S +Y T K+ D++H ++ G+ P +++ Sbjct: 119 EADKAGIQTIIVTGDRDLTQLASDNVTIYYT-KKGVTDVDHYTPEFIAEKYNGLKPSQII 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++ L GD+ DNIPGI G+G KTA LL ++ +EN+ + + KK +E + E A Sbjct: 178 DMKGLMGDTSDNIPGIAGVGEKTAIKLLNQFETVENLYEHIDEVSGKKLKEKLENGQEDA 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLIL-EDCNGPRLISFLKALEFTKLINRV 288 +S++L ++ D PI + L+ L +D + I K L+F +++N++ Sbjct: 238 FMSKQLATIKRDSPIEVSLKDTKLPDDVDQTAKIDLFKELDFKQMLNQI 286 >gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1] Length = 833 Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 196/498 (39%), Positives = 304/498 (61%), Gaps = 33/498 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+++ +D +L++Y+LD ++ + +A+++ + Sbjct: 364 REGVALDPTDDPLLVAYLLDPANTNPE--GVARRY----------------------GGE 399 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A E + + +L+ L P+L EKLL +Y+ +++P+ V++ ME G+++D LL+ Sbjct: 400 FTEDAAERALLSERLFQTLFPRL-SEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQD 656 +S E+ K + LE ++ L+G FNL+S QL +LF +L P G KTG+ ++TAQ Sbjct: 459 LSFELEKEMERLEGEVFRLAGHPFNLNSRDQLEKVLFDELGLTPVGRTEKTGK-RSTAQG 517 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + G +PI++ IL++R+LSK+KSTY D LP ++ RT R+HT ++ +T TGRL+S Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSS 577 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IR+AF++ L++ADYSQIELR+LAH++ L +VF D Sbjct: 578 DPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKD 637 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH AA +FG++ V P+MRR AKT+NF ++YG+S RL+ +L I EA +I+RYF Sbjct: 638 IHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLYGMSAHRLSQELGIDYKEAEAFIERYF 697 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IE+T R GYVET+FGRR + ++ S S+R ER A N P+QG+A Sbjct: 698 QSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTA 757 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + L+ L +LLQ+HDELV EVPE+ A ++ ME A Sbjct: 758 ADLMKIAMVKLFPRLK--PLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENAY---- 811 Query: 957 NLRVPLKVNIKVSNNWQE 974 L VPL+V + V +W E Sbjct: 812 PLDVPLEVEVGVGRDWLE 829 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 109/284 (38%), Positives = 155/284 (54%), Gaps = 12/284 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + LVDG YR FYA L + + G PV + GF L K L+ + + V+ Sbjct: 12 KRVLLVDGHHLAYRTFYALSLTTSR--GEPVQMVYGFARSLLKALKEDGQAVV-----VV 64 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD A +FR+E Y YKA R PE QL LV+ G+ +E G+EADD++ T Sbjct: 65 FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTL 124 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 AE+EG V I++ D+D QL+S + L D D++ +K+G+PPE+ V Sbjct: 125 AKKAEREGMEVCILTGDRDFFQLLSEKVSVLLPDGTLVTPKDVQ---EKYGVPPERWVDF 181 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +ALTGD DNIPG+ GIG KTA LL E+G++EN+L N R+K R I + E RL Sbjct: 182 RALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSLRRKIEAHLEDLRL 241 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 S L +RTD+P+ + + L + L +FL+ LEF L++ Sbjct: 242 SLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFLEELEFGSLLH 285 >gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942] gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942] Length = 880 Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 211/555 (38%), Positives = 326/555 (58%), Gaps = 41/555 (7%) Query: 438 DSTGKNTLTKEIL---SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMS 493 + TG + KEI KK+ E+E K + K + L GI ++G E D +L + Sbjct: 343 NETGHYYIPKEIAVQSEIFKKWAEDESQKKWVFDSKRSVVALRWQGIELKGAEFDALLAA 402 Query: 494 YVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549 Y+++ + D+AS+A+ + +S K K ++P ++++ H + + + Sbjct: 403 YIINPANTYDDVASVAKDYGLHIVSSDEAVYGKGAKRAVP----GENELAMHLVRKAAAV 458 Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVV---------SQMEITGIQIDQDLLKQVSA 600 L EKLL E D+ + +ME G+++D L+++ Sbjct: 459 DSLR---------EKLLQELENNDQLELYEELELPLALILGEMESIGVKVDVGRLERMGE 509 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 E+ L EE I++++GE FN++SPKQLG ILF KL P KTKTG + T+A LE++ Sbjct: 510 ELGARLKEYEEKIHEIAGEPFNINSPKQLGVILFEKLGLPVVKKTKTG-YSTSADVLEKL 568 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 + I+ IL++RQ+ K++STY + L I K + +VHT ++ A T TGRL+S +PNL Sbjct: 569 -ADQHDIVSYILQYRQIGKLQSTYIEGLLKVIRKDSHKVHTRFNQALTQTGRLSSTDPNL 627 Query: 721 QNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDI 777 QNIPI+ + G+KIR+AF+ P++K + +ADYSQIELR+LAHI+K L + F N +D+ Sbjct: 628 QNIPIRLEEGRKIRQAFV--PSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDV 685 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H A ++F V ++V+P MRR AK +NF I+YGIS + L+ L I R EAA +I+RY Sbjct: 686 HTKTAMDVFHVAQDEVTPAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAAFIERYLE 745 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 F G+ Y+E++ +Q GYV T+ RR + E+ S ++R+ ER A+N PIQGSAA Sbjct: 746 SFKGVKVYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNLRSFAERTAMNTPIQGSAA 805 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI ++AMI + L++ +L K+LLQ+HDEL+FE P+EEI +++ ME A +N Sbjct: 806 DIIKKAMIDMAAKLKEKQLKAKLLLQVHDELIFEAPKEEIKLLEKLVPEVMEHA----LN 861 Query: 958 LRVPLKVNIKVSNNW 972 L VPLKV+ +W Sbjct: 862 LDVPLKVDFASGPSW 876 Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 115/294 (39%), Positives = 172/294 (58%), Gaps = 11/294 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L LVDG+S YRAF+A PLLS G+ NA+ GF +L K+L++ + +H Sbjct: 1 MTERKKLVLVDGNSLAYRAFFALPLLSNDK-GIHTNAVYGFTMILMKMLEDEK----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR+ + +YK R K P L Q+P +R A+ I E++ +EADDI Sbjct: 56 MLVAFDAGKTTFRHSTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 I T AEK+GF V I S DKDL QL + T + T ++ D+E HV +K+G+ Sbjct: 116 IGTLAKSAEKDGFEVKIFSGDKDLTQLATEHTTVAIT-RKGITDVEFYTPQHVEEKYGLT 174 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 PE+++ ++ L GDS DNIPG+PG+G KTA LL+++ ++E +L + + KK +E + E Sbjct: 175 PEQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFHSVEKLLESIGEVSGKKLKEKLEE 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 + + A +S++L + TD PI I L L + N ++IS K L F L+ R+ Sbjct: 235 FKDQAVMSKELATIMTDAPIDISLAELDYDGFNREQVISIFKDLGFNTLLERLG 288 >gi|325697968|gb|EGD39851.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK160] gi|327458424|gb|EGF04780.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1] gi|327471749|gb|EGF17190.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK408] Length = 880 Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 208/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRTKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ EH V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----EQEQLFEHLARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + AE K L SL + IYDL+G++FN++SPKQLG ILF + P Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878 Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 166/302 (54%), Gaps = 19/302 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R + GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIKIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293 Query: 289 AT 290 T Sbjct: 294 GT 295 >gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] Length = 880 Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 217/605 (35%), Positives = 343/605 (56%), Gaps = 37/605 (6%) Query: 376 DIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE--TIFIDLSV 433 D +++ K++ G +FK + + HSK +AI T KD ++ ++ FID Sbjct: 305 DYEKFADKIKAKGEVTFKCLYEGESYIHSKVYKLAIKT---KDSPAYILDPDQAFID--- 358 Query: 434 HTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLM 492 K FE+E LK +IK D ++L++ GI + F+D+MLM Sbjct: 359 ------------------SFKDVFEDEKILKNSFDIKEDIVLLNKLGIDLNLPFDDLMLM 400 Query: 493 SYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549 Y++D RSS+D+ +++Q +L Y + ++L K S+ ++ ++ + N I Sbjct: 401 HYLIDPSRSSYDLKTLSQAYLDYEVISEVDLLGKGKKSLSYGELDYDKLSNYLASELNAI 460 Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609 L L K+ +YE ++ + V++ MEI G D+ +L + +I+K+L L Sbjct: 461 EDAKAKLVDMLNEYKMYDLYEDIEIKLSKVLANMEIVGFVTDRKVLLDLKEDINKDLEKL 520 Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK 669 IY+L+G +FN++S KQLG++LF L P KTKTG + T A LE++ + II Sbjct: 521 TSEIYELAGSEFNINSTKQLGEVLFKDLDLPVIKKTKTG-FSTDASVLEKLR-DKHQIIP 578 Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729 I ++R+L K++STY + L I+ R+ + + TGRL+S +PNLQN+PIKTD Sbjct: 579 KIEKYRELFKLQSTYIEGLEKAIDD-DGRIRSTFRQNIAATGRLSSQDPNLQNLPIKTDE 637 Query: 730 GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789 G+ IR+AF + K LI ADYSQIELRILA ++ + + F N DIH A+++F Sbjct: 638 GRLIRKAFKAGQGKILIDADYSQIELRILASLSGDEHMIEAFRNGEDIHAKTASKVFHTP 697 Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849 +++V+ + R AK +NF IIYGIS + L+ L IPR EA YI Y +P I Y++ Sbjct: 698 LDEVTKRQRSDAKAVNFGIIYGISDYGLSQNLNIPRKEAKAYIDNYMASYPSIKAYMDSI 757 Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 +++G+VET+F RR + EINS ++R+ +R A+N PIQG+AADI + AMI K Sbjct: 758 VEKAKEDGFVETLFNRRRYVPEINSKNFNVRSFGQRVALNTPIQGTAADIIKIAMIETDK 817 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 +L+ L K++LQIHDE++ E E+ +A +I+ +SM++A NL+VPL V+I Sbjct: 818 NLKKAGLDAKIVLQIHDEIILEASLEDKDSAMEILRNSMQEAA----NLKVPLIVDIDTG 873 Query: 970 NNWQE 974 + E Sbjct: 874 ESMYE 878 Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 91/283 (32%), Positives = 154/283 (54%), Gaps = 9/283 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS I+RAF+A P L+ +DG+ N + GF M +N+ + V FD Sbjct: 6 LMLIDGSSLIFRAFFALPKLTN-NDGVMTNGVYGFLTMY----KNAFDRYKPDYILVAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFR++ + DYKA R K+P L Q +++ + + ++ GFEADDI+ TY Sbjct: 61 RASKTFRHKEFKDYKATRNKMPSELSYQFGILKDILDSLNVKYTDLDGFEADDIVGTYAK 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVI----KKWGIPPEKMVCL 182 +A++ G+ +I+ D+D +QLV + T K E+ + +++G+ P++++ + Sbjct: 121 MAQEAGYDSVLITGDRDYLQLVDEKIVVNLTKKGVSETKEYTLATIKEEFGLTPKQLIDV 180 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+ GIG K A +Q+YG++E + + I KK +E +++ A + Sbjct: 181 KGLEGDKSDNIPGVEGIGPKKAIEFIQKYGSIEGLYEHIDEISGKKTKERLIDSEPIAYM 240 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 S+K+ + T P+ LE L + + + P L F K I Sbjct: 241 SKKIGTIVTSAPVEYELEELKVAEPDLPSLREKYSKYNFNKFI 283 >gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403] gi|18202780|sp|Q9CDS1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403] Length = 877 Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 202/492 (41%), Positives = 301/492 (61%), Gaps = 17/492 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEIL-KSRKSSIPIDKISDSQVQEHAI 543 D ML Y++ S + I++IA+ + S T +EI K K ++P D+ + EH Sbjct: 396 DAMLAKYLI-STTEDNKISTIARLFNSGHLATDEEIFGKGTKIALP----DDAVLFEHLA 450 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 V+ + +L+ + H+ ++ P+ +V+++MEITGI + Q+ L+++ AE Sbjct: 451 RKIKVLALAKEKMMAELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENE 510 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L SL IYDL+GE+FN++SPKQLG ILF KL+ P G KTKTG +TA D+ + Sbjct: 511 EKLASLTREIYDLAGEEFNINSPKQLGVILFEKLQLPVGKKTKTGY--STAVDVLEDLAA 568 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 +P++ ILE+RQ++K++STY L I ++HT Y T TGRL+S++PNLQNI Sbjct: 569 LSPVVAKILEYRQINKVQSTYVKGLIPQI-ADDGKIHTRYVQDLTQTGRLSSVDPNLQNI 627 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 P++ + G+KIR+AF+ L+S+DYSQIELR+LAHI+ L F++ DIH A Sbjct: 628 PVRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAM 687 Query: 784 EIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +FG+ E V+ RR+AK +NF ++YGIS F LA L I R +A +YI+ YF R+PGI Sbjct: 688 RVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGI 747 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+E R G+VET+ RR +IN+ ++R ER AIN+PIQGSAADI + Sbjct: 748 KTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKI 807 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI++ K+L +K+LLQ+HDE++ +VP EE+ ++ +ME+A I L VPL Sbjct: 808 AMINLDKALSARDFKSKLLLQVHDEIILDVPLEELDEIKVLVKQTMEEA----IELAVPL 863 Query: 963 KVNIKVSNNWQE 974 KV+ W E Sbjct: 864 KVDENTGKTWYE 875 Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 108/300 (36%), Positives = 164/300 (54%), Gaps = 19/300 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+ ++ L L+DGSS +RAF+A L + D GL NAI F ML L++ R Sbjct: 1 MENKDRLLLIDGSSVAFRAFFA---LYNQIDRFKAPNGLHTNAIFAFHTMLSSLME--RI 55 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 E +H + FD TFR E++ DYK R K P+ QLP ++ + GI E+ Sbjct: 56 EP--THVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELAN 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AE F VTI++ DKD++QLV T + + K E+ +++ Sbjct: 114 YEADDIIGTLDKMAEAPNVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K G+ P + + L+AL GDS DN PG+ +G KT LLQE+G+LEN+ N +K K Sbjct: 174 LEKMGLTPAQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVDSLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ E A LS++L + T PI I L+ +L+ L F + F + +++ Sbjct: 234 MKENLIADKEMAFLSQQLATINTKAPIEIGLDDTLLKGKKVDELSQFYDEMGFAQFKSKL 293 >gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342] gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342] Length = 891 Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 194/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI ++G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 399 GIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTEEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|328950652|ref|YP_004367987.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884] gi|328450976|gb|AEB11877.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884] Length = 834 Score = 355 bits (912), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 178/426 (41%), Positives = 275/426 (64%), Gaps = 9/426 (2%) Query: 551 QLWLLLRPKLIVEK-LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSL 609 +LW +L +L E+ L +Y +++P+ V+++ME G+++D L+ +SAE+ + + ++ Sbjct: 414 ELWRILGERLAGEEALWWLYREVERPLAGVLAEMEHAGVRVDVAYLEALSAELGREIAAI 473 Query: 610 EENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQDLEQINCGDNPII 668 E ++ L+G FNL+S QL IL+ +L P+ KTG+ T+A LE + G +PI+ Sbjct: 474 EAEVHRLAGRAFNLNSRDQLEVILYDELGLTPTRRTQKTGRRSTSAAALEAL-VGAHPIV 532 Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728 + IL +R+LSK+K TY D LP ++ T R+HT Y T TGRL+S +PNLQNIP++T+ Sbjct: 533 ERILAYRELSKLKGTYLDPLPRLVHPATGRIHTRYHQTGTATGRLSSSDPNLQNIPVRTE 592 Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 +G++IRRAF++ P L++ADYSQIELR+LAH++ L +VF+ DIH A+ +FGV Sbjct: 593 VGRRIRRAFVAEPGYVLVAADYSQIELRVLAHLSGDENLKRVFQERRDIHTQTASWMFGV 652 Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848 E V P RR AKT+NF ++YG+SP RL+ +L I +EA +I+RYF +P + YIE+ Sbjct: 653 PPEAVDPFRRRAAKTVNFGVLYGMSPHRLSRELGIEYAEAERFIQRYFESYPRVQAYIER 712 Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908 T R+ GYVET+FGRR + +I S ++R ER A N P+QG+AAD+ + AM+ + Sbjct: 713 TLEQAREKGYVETLFGRRRYIPDIRSRNRNVREAAERMAFNMPVQGTAADLMKLAMVKL- 771 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 + E L +++LQ+HDELV E P+E ++++ ME A L VPL+V + + Sbjct: 772 -APEIRSLGARLILQVHDELVLEAPQERAEAVARVVREVMEGAW----ALDVPLEVEVGI 826 Query: 969 SNNWQE 974 NW E Sbjct: 827 GENWLE 832 Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 101/288 (35%), Positives = 152/288 (52%), Gaps = 7/288 (2%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + + +VDG YR ++A L+ G PV A+ GF L KLL+ I Sbjct: 9 HRPERILIVDGHHLAYRNYFALGELTTSR-GEPVQAVYGFARTLLKLLKEDGDCVI---- 63 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V+FD P +FR+E + YKA R PE PQL ++ G+ E+ G+EADD+I Sbjct: 64 -VVFDAPQPSFRHEQFAAYKAQRAPTPEDFKPQLEKIKQLVDLLGLARFELAGYEADDVI 122 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 + AE EG+ V I+++D+D QL+S + EE + E V +K+G+ + V Sbjct: 123 GSLAKKAEAEGYEVRIVTSDRDSYQLLSDKVRVLKPDGEE-VTPETVREKYGVTVAQWVD 181 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +ALTGD+ DNIPG+ GIG KTAA LL E+G+LEN+ + + + R+ + E A Sbjct: 182 FRALTGDASDNIPGVRGIGAKTAAKLLAEWGSLENLYAHLAEVTPPSVRKKLEAGREKAA 241 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 LSR L + TD+ I + + L +FL+ALEF ++ + Sbjct: 242 LSRALSEIHTDLAIEVDFAACHRRPVDREALRAFLEALEFGSILRELG 289 >gi|325695817|gb|EGD37714.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK150] Length = 880 Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 208/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRAKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ EH V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----DQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + AE K L SL + IYDL+G++FN++SPKQLG ILF + P Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADG-KIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 848 VRQLVKETMEAA----IKLAVPLVADENAGQTWYE 878 Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 165/302 (54%), Gaps = 19/302 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R Q GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LE + N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLEKLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293 Query: 289 AT 290 T Sbjct: 294 GT 295 >gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241] gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241] Length = 891 Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 194/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI ++G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 399 GIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|315165261|gb|EFU09278.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1302] Length = 882 Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 209/515 (40%), Positives = 302/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521 ++ K + L+RY M G D++L +Y+LD+ ++ DI +AQ + + Sbjct: 376 YDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGVAQHYGYDAIQSDEAIYG 435 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +P D + H I L L +L + ++ +++ P+ ++ Sbjct: 436 KGAKKGLPED---EEVFFGHLARKIKAIQFLTSKLDSELTEKNQADLFYKMELPLSRILG 492 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 MEITGI++D LK++ E S+ L +EE IY +GE+FNL+SPKQLG ILF K+ P Sbjct: 493 DMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPKQLGVILFEKMGLPV 552 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG + T LEQ+ PI+ +IL +RQ++KI+STY + L I + ++HT Sbjct: 553 IKKTKTG-YSTAVDVLEQLKE-QAPIVADILTYRQIAKIQSTYVEGLLKVI-QPDNKIHT 609 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+KIR AF+ LI S+DYSQIELR+LAH Sbjct: 610 RYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAH 669 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L + F DIH A +FGV E V+ MRR AK +NF I+YGIS + L+ Sbjct: 670 ISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTSNMRRQAKAVNFGIVYGISDYGLSQ 729 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF ++PG+ +Y+E+ + GYVET++ RR + +INS ++ Sbjct: 730 NLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNL 789 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN PIQGSAADI + AMI + + L++ KL MLLQ+HDELVFEVPE E+ Sbjct: 790 RSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHDELVFEVPESELEQ 849 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +Q++ ME A ++L VPL + W E Sbjct: 850 LNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 880 Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L LVDG+S +RAF+A L R +GL NAI F NM ++Q + + +H V Sbjct: 6 LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E Y +YKA R K P Q+P +R + G+ E+ +EADDII T Sbjct: 62 AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178 +K+ F V ++S D+DL QL + T + TVK E EH+ +K+ G+ P++ Sbjct: 122 LANKVDKDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ IG KTA LL++YG++E + N +K+ K +EN++ E Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 A LS++L + + P+ + +E L E N +L+ F K ++F + + ++ T Sbjct: 242 QAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDIT 294 >gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 891 Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 194/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI ++G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 399 GIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC polymerase 1 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus] Length = 834 Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 178/411 (43%), Positives = 271/411 (65%), Gaps = 8/411 (1%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 EKLL +Y ++KP+ V++ ME TG+++D L+ +S E+++ + LEE ++ L+G FN Sbjct: 426 EKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPFN 485 Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 L+S QL +LF +L+ P+ KT KTG+ T+A LE + +PI++ IL+ R+L+K+K Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREA-HPIVEKILQHRELTKLK 544 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 +TY D LP+ ++ T R+HT ++ +T TGRL+S +PNLQNIP++T LGQ+IRRAF++ Sbjct: 545 NTYVDPLPSLVHPNTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFVAEA 604 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 L++ DYSQIELR+LAH++ L +VF+ DIH A+ +FGV E V P MRR A Sbjct: 605 GWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAA 664 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 KT+NF ++YG+S RL+ +L IP EA +I+RYF FP + +IEKT R+ GYVET Sbjct: 665 KTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVET 724 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 +FGRR + ++N+ S+R ER A N P+QG+AAD+ + AM+ + L + + +ML Sbjct: 725 LFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLRE--MGARML 782 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LQ+HDEL+ E P+ + + +MEKA L VPL+V + + +W Sbjct: 783 LQVHDELLLEAPQAGAEEVAALAKEAMEKAY----PLAVPLEVEVGMGEDW 829 Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 113/286 (39%), Positives = 159/286 (55%), Gaps = 8/286 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L KE Sbjct: 8 FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKAL----KEDGYKA 62 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR+E Y YKA R PE QL L++ G +E+ G+EADD+ Sbjct: 63 VFVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDV 122 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 +AT EKEG+ V I++ D+DL QLVS + + I E + +K+G+ PE+ V Sbjct: 123 LATLAKNPEKEGYEVRILTADRDLDQLVSDRVAVLHP-EGHLITPEWLWQKYGLKPEQWV 181 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DN+PG+ GIG KTA LL+E+G+LEN+L N R+K + RE I + E Sbjct: 182 DFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLEDL 241 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 RLS +L +RTD+P+ + L D G R +FL+ LEF L++ Sbjct: 242 RLSLELSRVRTDLPLEVDLAQGREPDREGLR--AFLERLEFGSLLH 285 >gi|257066818|ref|YP_003153074.1| DNA polymerase I [Anaerococcus prevotii DSM 20548] gi|256798698|gb|ACV29353.1| DNA polymerase I [Anaerococcus prevotii DSM 20548] Length = 879 Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 202/531 (38%), Positives = 318/531 (59%), Gaps = 11/531 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIA 506 + +S K+ FE+E +K +IK D ++L + GI+++ ++D+MLM Y++D RSS+D+ Sbjct: 354 DFVSKFKEIFEDEEIVKNSFDIKEDVVLLDKLGINLKLPYDDMMLMHYLIDPSRSSYDLK 413 Query: 507 SIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 ++Q +L Y K ++L K ++ + ++ + N I +L KL Sbjct: 414 VLSQSYLDYEVKSPVDLLGKGKKALKYQDLDFDELGNYLASGINAIEDSKEILEDKLDEY 473 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 +L +Y+ ++ + V++ MEI G D+ +L+ + I K++ + E IY+L+G +FN+ Sbjct: 474 HMLDLYKEIEIKLSKVLADMEIVGFVTDKKVLEDLKENIDKDIDKITEEIYELAGSEFNI 533 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 +S KQLG++LF L P KTKTG + T AQ LE++ + II I +R+L K++ST Sbjct: 534 NSTKQLGEVLFKDLDLPVIKKTKTG-FSTNAQVLEKLRDK-HQIIPKIERYRELFKLRST 591 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y + L I++ R+ + + TGRL+S +PNLQN+PIKTD G+ IR+AF + K Sbjct: 592 YIEGLEKAIDE-DGRIRSTFRQNIAATGRLSSQDPNLQNLPIKTDEGRLIRKAFRAEEGK 650 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 LI ADYSQIELRILA ++ + F+ +DIH A+++F +++KV+ + R AK Sbjct: 651 ILIDADYSQIELRILASLSGDRHMIDAFKEGVDIHTKTASKVFHTDLDKVTKRQRSEAKA 710 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF IIYGIS + L+ L IPR EA +YI Y +P I EY++ +++GYVET+F Sbjct: 711 VNFGIIYGISDYGLSQNLNIPRKEAKEYIDNYMASYPSIKEYMDSIVEKAKEDGYVETLF 770 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + EINS ++R+ +R A+N PIQG+AADI + AMI K+L+ L K++LQ Sbjct: 771 KRRRYVPEINSRNFNVRSFGQRVALNTPIQGTAADIIKIAMIETDKNLKKAGLDAKIVLQ 830 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 IHDE++ E E A +I+ SME A +L VPL V+I + E Sbjct: 831 IHDEIILEADESSKDEAIKILRESMENAT----DLEVPLIVDIDTGVSMYE 877 Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 154/283 (54%), Gaps = 9/283 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DGSS I+RAF+A P L+ +DG+ N + GF M N+ + V FD Sbjct: 5 VMLIDGSSLIFRAFFALPKLTN-NDGVMTNGVYGFLTMY----NNAFDRYKPDYVLVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFR++ + DYK R K+P L Q +++ + + ++ GFEADDI+ TY Sbjct: 60 RASKTFRHKEFEDYKGTRDKMPSELSYQFGILKDILDSLNVKYTDLDGFEADDIVGTYAK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCL 182 +A++ G+ +I+ D+D +QLV + T K ++ ++ + +++G+ P++++ + Sbjct: 120 MAQEAGYESVLITGDRDYLQLVDEKIVVNLTKKGVSETKEYTVDTIKEEFGLSPKQLIEV 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+ GIG K A +Q+YG++E + + + KK ++ +++ A + Sbjct: 180 KGLEGDKSDNIPGVDGIGPKKAIGFIQKYGSIEGLYDHIDEVSGKKTKQTLIDSEAIAYM 239 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 S+K+ + T P+ LE L ++D + L F K + Sbjct: 240 SKKIGTIVTSAPVEFDLEELKVKDPDLESLREKYSKYNFNKFL 282 >gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293] gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293] Length = 891 Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 194/501 (38%), Positives = 308/501 (61%), Gaps = 20/501 (3%) Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRK---EIL-KSRKSSIPIDKIS 534 GI ++G + D+++ +Y+LD + D ++A+ ++ K E+ K K ++P +I Sbjct: 399 GIDVQGIDFDLLIAAYLLDPADTDKDFRTVAKMKETHAVKSDEEVYGKGAKRAVPELEI- 457 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 V EH +V+ + +L + ++ L+ P+ V++ ME+ G+++D + Sbjct: 458 ---VAEHVARKVHVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTER 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + E++ L +E+ IY L+G +FN++SPKQLG ILF L P KTKTG + T+A Sbjct: 515 LRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQLGVILFENLNLPVIKKTKTG-YSTSA 573 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L+++ + II NIL +RQL K+ STY + L +++ + ++HT ++ T TGRL+ Sbjct: 574 DVLDKL-MDHHEIIPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFNQVLTQTGRLS 632 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIPI+ + G+KIR+AF+ P+++ + +ADYSQIELR+LAHIA L F Sbjct: 633 STDPNLQNIPIRLEEGRKIRQAFV--PSEEGWIMYAADYSQIELRVLAHIANDKGLVDAF 690 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ +DIH A ++FGV ++V+ MRR AK +NF I+YGIS + L+ L I R AA++ Sbjct: 691 QHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEF 750 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++Y FPG+ EY++ +Q GYV T+ RR + EI S ++R+ ER A+N P Sbjct: 751 IEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTP 810 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI ++AMI + LE+ L ++LLQ+HDEL+FE P+EEI +++ ME A Sbjct: 811 IQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHA 870 Query: 952 CLPKINLRVPLKVNIKVSNNW 972 I L VPLKV+ W Sbjct: 871 ----IELAVPLKVDYSYGPTW 887 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 108/308 (35%), Positives = 175/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 16 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 70 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 71 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 130 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++G +V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 131 LAKEASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++G +E + N ++ KK +E + + Sbjct: 191 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 251 ALMSKDLATIITDAPITVHVDDMEYKGYEPSDVIPMFENLGFTSLLNKLGVTPEETAPAE 310 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 311 LDDITFDI 318 >gi|157149813|ref|YP_001449466.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1] gi|157074607|gb|ABV09290.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1] Length = 880 Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 208/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRAKVLLSHYGIELPAATFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ EH V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----EQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLFEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + AE K L SL + IYDL+G++FN++SPKQLG ILF + P Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADG-KIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 120/303 (39%), Positives = 167/303 (55%), Gaps = 19/303 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R Q GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293 Query: 289 ATT 291 TT Sbjct: 294 GTT 296 >gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 867 Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 201/524 (38%), Positives = 314/524 (59%), Gaps = 14/524 (2%) Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWL 513 K +NE IGH+IK + L +GI + F D +M+Y+L+ S++DI + +K+L Sbjct: 348 KLLDNEKLTLIGHDIKDFFVNLSYHGIELNCKFYDTAIMTYLLNPSESNYDIGRVLKKYL 407 Query: 514 SY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570 +++L KS D I + ++ ++ + +L L + ++ + + Sbjct: 408 KEDIPNIEDMLGKGKSKKSYDDIDKKLLIDYLCATASKLSKLKDKLMSFIKEMEMEELLD 467 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 ++ P+++V+ ME+ G +D+D+LK +S EI + + ++IYD +G +FN++S KQL Sbjct: 468 NVELPLVEVLKSMEVYGFTLDKDVLKDLSKEIGEKTDKIIKDIYDAAGYEFNINSTKQLS 527 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS-LP 689 + LF KL P KTKTG + T + L ++ N I+ I+E+RQL K+KSTY D +P Sbjct: 528 EFLFDKLNLPPIKKTKTG-YSTDMEVLVEL-IPYNEIVGEIIEYRQLMKLKSTYIDGFMP 585 Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISA 748 I + +VH+ + TGR++S EPNLQNIP++ + G++IR+AFIS ++SA Sbjct: 586 --IMDKDDKVHSTFKQTVAATGRISSTEPNLQNIPVRDEFGRRIRKAFISSFQGGYIVSA 643 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELR+LAH+++ L + F N+ DIH A+E+F + E+V+ +MRR AK +NF I Sbjct: 644 DYSQIELRVLAHLSEDIKLIESFLNNEDIHLRTASEVFKIAPEEVTGEMRRRAKAVNFGI 703 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS + L+ L+I R EA +YI YF R+ G+ YI+ F R+NGYV TI RR + Sbjct: 704 VYGISDYGLSRDLKISRKEAKEYIDNYFDRYKGVKNYIDSVVKFARENGYVTTILNRRRY 763 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 EINS + R+ ER A+N PIQGSAADI + +M+ V+ L+ L +K++LQIHDEL Sbjct: 764 IPEINSKNYNQRSFGERMAMNTPIQGSAADIIKMSMVKVYNELKSRSLKSKLILQIHDEL 823 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + + +E+ ++ ME I LRVPL V+I NW Sbjct: 824 IVDTFPDEVEIVKNLLKTIMENV----IKLRVPLVVDIGYGKNW 863 Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 120/291 (41%), Positives = 171/291 (58%), Gaps = 10/291 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DG+S +YRA++A P L +GL NAI GF ML KLL + + IA V FD Sbjct: 4 FLIIDGNSLMYRAYFALPDLMN-SEGLHTNAIYGFSMMLLKLLDEEKPDYIA----VAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y YK R +PE L+ Q+ +++ AF I IEI+GFEADDII T + Sbjct: 59 KKAPTFRHKEYSAYKGTRQSMPEELIEQVDILKDVINAFNIKTIEIEGFEADDIIGTVSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTT----CLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 IA + G V I++ D+D +QLVS C + E+ D V++++ + P + + L Sbjct: 119 IASENGLKVLIVTGDRDALQLVSDGVKVKICKKGITQMEEYDERAVVERYEVTPRQFIDL 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+P IG KTA L++E+G++EN+L+N ++K K RENI E A L Sbjct: 179 KGLMGDKSDNIPGVPNIGEKTAIKLIKEFGSIENVLMNTDKLKG-KIRENIENNTEMAML 237 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 S+KL + +VPI I L L D + +LI + LEFT LIN + D Sbjct: 238 SKKLATIERNVPIEIDLSEYQLRDYDREKLIDLFEKLEFTSLINDLKKDAD 288 >gi|293366362|ref|ZP_06613041.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis M23864:W2(grey)] gi|291319487|gb|EFE59854.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis M23864:W2(grey)] gi|329733786|gb|EGG70112.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU045] Length = 876 Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 208/529 (39%), Positives = 317/529 (59%), Gaps = 21/529 (3%) Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510 +L ++ E+++ KI ++ K + HR GI++ E D+ML SY++D RS D+ S+ Sbjct: 357 HLVQWLEDKNTTKIVYDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVKSVVS 416 Query: 511 KW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + +Y + I K +K IP + I + EH + I + ++ +L + Sbjct: 417 LYGQNYVKDNITIFGKGKKHHIPEEPI----LNEHIASVTEAIAAVTPTMKSQLEDYNQI 472 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 + + L+ P+ ++S+ME GI D + LK++ EI K L L NI++ +GE FN++SP Sbjct: 473 ELLKDLELPLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSP 532 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG +LF L+ P KTKTG + T LE++ G++PII +ILE+RQL+K++STY + Sbjct: 533 KQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEKLQ-GEHPIIDDILEYRQLAKLQSTYVE 590 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L I+K R+HT ++ TGRL+S++PNLQNIPI+ + G+KIR+AF PT K Sbjct: 591 GLQKVISK-DHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAF--KPTSKDS 647 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 ++SADYSQIELR+LAHI + L F N DIH A ++F V ++V MRR AK Sbjct: 648 VILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKA 707 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ + GYVET+ Sbjct: 708 VNFGIVYGISDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLL 767 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I S ++R+ ER A+N PIQGSAADI + AM+ + +++ K K+LLQ Sbjct: 768 HRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQ 827 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE+P+ E+ S+ + ME+A + L VPLKV+ W Sbjct: 828 VHDELIFEIPKSEVEDFSKFVEEIMEQALV----LDVPLKVDSNYGATW 872 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 107/295 (36%), Positives = 165/295 (55%), Gaps = 15/295 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS H G+ NA+ GF +L K++ KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKII----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178 + A++E F II+ D+DL QL + +Y T K+ D++H K+ G+ P++ Sbjct: 117 SRQADEEDFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPKFIAEKYNGLVPKQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ ++E + + + KK +E ++ + Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKD 235 Query: 239 TARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVATT 291 A +S+ L + PI + LE L L+D + + I K LEF +L+ + T+ Sbjct: 236 DALMSKDLATINVHSPIEVSLEDTKLTLQD-DTTKKIELFKKLEFKQLLADIDTS 289 >gi|327463731|gb|EGF10047.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1057] Length = 880 Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 208/515 (40%), Positives = 307/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + T E+ Sbjct: 374 YDLKRAKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTVLPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ EH V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----EQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + AE K L SL + IYDL+G++FN++SPKQLG ILF + P Sbjct: 489 KMEIAGIKVERENLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 848 VRQLVKETMEAA----IKLAVPLVADENAGQTWYE 878 Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 121/305 (39%), Positives = 168/305 (55%), Gaps = 19/305 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R Q GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PITI L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPITIGLDDLVYKGPQIETLSKFYDEMGFKQLKAQL 293 Query: 289 ATTYD 293 T D Sbjct: 294 GTAQD 298 >gi|323350933|ref|ZP_08086591.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66] gi|322122915|gb|EFX94621.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66] Length = 880 Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 208/516 (40%), Positives = 309/516 (59%), Gaps = 19/516 (3%) Query: 467 HNIKYDKLVLHRYGISM--RGFEDIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL 521 +++K K++L YGI + F D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRTKVLLSHYGIELPVASF-DARLAKYLL-STVEDNELATIARLYGQTILPTDDEVY 431 Query: 522 -KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 K K ++P Q+ EH ++L+ ++ +L L + +++P+ V+ Sbjct: 432 GKGAKRALP----EKEQLFEHLARKVQILLETEEPMQEQLRAHNQLDLLLEMEQPLAFVL 487 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ++MEI GI+++++ L+ + AE K L SL + IYDL+G++FN++SPKQLG ILF + P Sbjct: 488 AKMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLP 547 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++H Sbjct: 548 LEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAA-DGKIH 606 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILA 759 T Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LA Sbjct: 607 TRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLA 666 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLA 818 HI++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 667 HISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLA 726 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS + Sbjct: 727 NNLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFN 786 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 IRN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 787 IRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELT 846 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 847 AVRQLVKETMEAA----IKLAVPLVADENAGQTWYE 878 Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 120/305 (39%), Positives = 167/305 (54%), Gaps = 19/305 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R Q GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAR 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAAPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293 Query: 289 ATTYD 293 T D Sbjct: 294 GTGQD 298 >gi|227432296|ref|ZP_03914290.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351963|gb|EEJ42195.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 893 Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 199/526 (37%), Positives = 319/526 (60%), Gaps = 15/526 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK ENE LK N+K ++ R G++++G D +L++Y+LD+ + + ++++AQ+ Sbjct: 373 LKSVIENEQILKNVFNVKAQLVLFKRLGLALKGVNFDFILVAYLLDTVANDNVLSTLAQR 432 Query: 512 WLSYTRKE---ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 + Y + K K ++P D + + H ++ + +L +L + H+ Sbjct: 433 FDVYLAPDEDIYGKGAKFAVPTDT---NLLLSHIAHKADGLFKLEKPAFTELKQHEQTHL 489 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 Y ++ P+ V++ ME GI+++ + L+ ++ + + ++ IY +GE+FNL+SPKQ Sbjct: 490 YTDIELPLAFVLADMEYQGIKVNPEYLRNKGKDLYERIADIQSAIYIEAGEEFNLNSPKQ 549 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 LG +LF K+ P KTKTG +TA D+ + PI+ +IL++RQL+K+KSTY D L Sbjct: 550 LGVLLFEKMGLPVIKKTKTGY--STAVDVLEKLAPQAPIVDHILQYRQLAKLKSTYIDGL 607 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747 + I + ++HT + T TGRL+S++PNLQNIP++++ G+ IR AF+ S P ++ Sbjct: 608 LSVIYPKDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRSEEGRLIRTAFVPSHPNWQIFG 667 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV-SPQMRRHAKTINF 806 ADYSQIELR+LAH+ + + F N DIH A +FG+ + V P RR AK +NF Sbjct: 668 ADYSQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNF 727 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YGIS + LA L I R+EA +I YF FP IHE++ K F ++GYVETI RR Sbjct: 728 GIVYGISDYGLANNLGISRAEAKRFIDTYFQEFPQIHEWMNTIKTFAHEHGYVETIAHRR 787 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + +I + ++R+ ER A+N+PIQGSAADI + AMI V+++L + L +MLLQ+HD Sbjct: 788 RYLPDIQAKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVNEALRKNNLQARMLLQVHD 847 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EL+FE P +EI ++++ + M+ A + L VPLKV+ + W Sbjct: 848 ELIFETPVDEIDELTEVVTNVMDSA----VALDVPLKVDAHHGDTW 889 Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 101/293 (34%), Positives = 167/293 (56%), Gaps = 17/293 (5%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L R H+GL NA+ F N L K++ + +A A+ Sbjct: 6 LLLIDGNSLAFRAFYAMYNQLDRMISHEGLHTNALVAFNNFLDKIV-----DPMAPDLAL 60 Query: 64 I-FDYPAV--TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 + +D + T R +++P+YK R K+PE Q P +R G+ E G EADDI Sbjct: 61 VAWDAGSGKETHRGKLFPEYKDGRSKVPEEFKEQFPYLREMVMLHGLRNYEQAGLEADDI 120 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 I TY+ + E G++V I++ D+DL QL + + + K+ DIE ++ +K+GI Sbjct: 121 IGTYSRMGEAAGYSVIIVTGDQDLTQLATENVTV-NVTKKGVTDIESYTPAYIKEKFGIT 179 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ +ALTGD+ DN PG+ +G KTA LL EY N++N+ N ++KQ K ++N++ Sbjct: 180 PVQIIDKKALTGDTSDNYPGVTKVGEKTALKLLAEYNNIDNLYDNIDKLKQSKMKDNLIN 239 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A +R+L + TD + +PLE + + ++I F + L+F + + ++ Sbjct: 240 DRELAFQARELATILTDANLPLPLEEMEYRGVDFEKIIPFYENLDFKQHLAKI 292 >gi|324996302|gb|EGC28210.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK678] Length = 880 Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 207/515 (40%), Positives = 307/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRTKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ EH V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----EQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + E K L SL + IYDL+G++FN++SPKQLG +LF + P Sbjct: 489 KMEIAGIKVERETLQGMQTENEKTLESLTQEIYDLAGQEFNINSPKQLGTVLFEDMGLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/305 (40%), Positives = 171/305 (56%), Gaps = 25/305 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R Q GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHYYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR---LISFLKALEFTKLI 285 +EN+++ + A LS+ L + T PI I L+ L+ NGP+ L F + F +L Sbjct: 234 MKENLIKDKDKAFLSKTLATINTQAPIEIGLDDLV---YNGPQVEALSKFYDEMGFKQLK 290 Query: 286 NRVAT 290 +++ T Sbjct: 291 DQLGT 295 >gi|324990009|gb|EGC21950.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK353] Length = 880 Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 207/515 (40%), Positives = 309/515 (60%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRAKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ EH V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----DQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + AE K L SL + IY+L+G++FN++SPKQLG ILF ++ P Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYNLAGQEFNINSPKQLGTILFEDMRLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIERAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 167/302 (55%), Gaps = 19/302 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R + GI ++ Sbjct: 57 ---PTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPTYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L +++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQIETLSKFYDEMGFKQLKDQL 293 Query: 289 AT 290 T Sbjct: 294 GT 295 >gi|332358870|gb|EGJ36692.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1056] Length = 880 Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 208/515 (40%), Positives = 307/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRAKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ EH V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----EQEQLFEHLARKVQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + AE K L SL + IYDL+G+KFN++SPKQLG ILF + P Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQKFNINSPKQLGTILFEDMGLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKSEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R YVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKAYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878 Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 166/302 (54%), Gaps = 19/302 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R + GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHYYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293 Query: 289 AT 290 T Sbjct: 294 GT 295 >gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] Length = 928 Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 207/534 (38%), Positives = 329/534 (61%), Gaps = 26/534 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L+ +E+ + K N KYD + + I ++G + D ML SYVL+ +SH++A +A Sbjct: 411 LQPIWEDPNRPKSLQNCKYDLSIFRAHSIRLQGIQFDPMLASYVLNP-EASHNLADLAAS 469 Query: 512 WLSY--TRKEILKSRKSSI---PIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEK 564 +L+ T E L + S+ PI K++ E+ ++ +L +L KL + Sbjct: 470 YLNLPTTSYEKLLGKAESLADLPIAKVA-----EYCGTDAYCAYRLVPILTEKLQQTDPR 524 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L +++ +++ P+ V+ +ME GI+ID + L+Q S E+ K L SLE+ Y +GE FNL+ Sbjct: 525 LWNLFVQVELPLAHVLEEMEWVGIRIDTEFLRQFSQELEKELHSLEQKAYAQAGEVFNLN 584 Query: 625 SPKQLGDILFTKLKFP--SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 SPKQLG +LF KLK KT TG + T A LE++ GD+P+I+ IL++R L+K+KS Sbjct: 585 SPKQLGSLLFEKLKLDVRKTRKTATG-YSTDASVLEKLE-GDHPVIETILQYRTLAKLKS 642 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D+LP + + T RVHT ++ T TGRL+S PNLQNIPI+++ ++IR+AF+ Sbjct: 643 TYVDALPALVRRDTGRVHTSFNQTVTATGRLSSSNPNLQNIPIRSEFSRRIRQAFVPQEG 702 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 L SADYSQIELRILAH+++ L + F + D+H + A +F ++V+ + RR AK Sbjct: 703 WLLASADYSQIELRILAHLSQEPTLIECFRSGEDVHTLTARLLF--EKQEVTSEERRLAK 760 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 TIN+ +IYG+ R A + +EA ++++R+ R+ G+ Y+ T+ FV ++GYVET+ Sbjct: 761 TINYGVIYGMGAQRFARTAGVSLAEAKEFLRRFNERYAGVFAYLRATEAFVEKHGYVETL 820 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 GRR ++ ++ + RAA+NAPIQGSA+DI + AM+ + + L++ + +++LL Sbjct: 821 LGRRRYFPNLSQLSGHRKQAELRAAVNAPIQGSASDIIKVAMVRLQEKLQNFR--SRLLL 878 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 Q+HDELVFEV E +I ME+A + L +PL V+I++ +NW+E N Sbjct: 879 QVHDELVFEVEPSEWQDLRPLIQREMEEA----VPLSIPLVVDIQIGHNWKEAN 928 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 105/296 (35%), Positives = 150/296 (50%), Gaps = 25/296 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L LVDG S YR+FYA R G+P + GF L ++L+ + +H A Sbjct: 8 LLLVDGHSLAYRSFYAFAHSREGGLRTSTGIPTSVSFGFLKSLLEVLE----KYPPTHIA 63 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR+E YKA RP+ P + + ++ A IP + + GFEADD++ Sbjct: 64 VAFDTRQPTFRHEADETYKAGRPETPPEFVEDVENLQQVLAALRIPILAVPGFEADDVLG 123 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-------DTVKEEKIDIEHVIKKWGIP 175 T +A +E + V I+S D+DL QL+ P + D V E + V +K GI Sbjct: 124 TLCRLAPQE-YRVQILSGDQDLFQLIDPEGRIRVLHLNSKDRVSE--FGPQEVKEKLGIW 180 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRREN 232 P ++V +AL GD DNIPG+ GIG K AA LLQ YG+LE I + I Q+ RE Sbjct: 181 PWQVVDYKALCGDPSDNIPGVKGIGPKRAAELLQRYGSLEEIFNHLGEIPGKIQQYLREG 240 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 I A+ S+ L + DVP++ E + L + ++ L+ LEF I +V Sbjct: 241 I----PAAQHSQFLARIHCDVPLSPDWESMRLTGFDPEEVLPLLEKLEFRSFIAQV 292 >gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus] Length = 554 Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 193/496 (38%), Positives = 302/496 (60%), Gaps = 31/496 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+ + +D ML++Y+LD ++ + +A+++ +E Sbjct: 84 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 123 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A + + LW L + E+LL +Y +++P+ V++ ME TG+++D L+ Sbjct: 124 AGERAALSERLFANLWGRLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 180 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTAQD 656 +S E+++ + LE ++ L+G FNL+S QL +LF +L P+ KT+ TG+ T+A Sbjct: 181 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTENTGKRSTSAAV 240 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + +PI++ IL++R+L+K+KSTY D LP+ I+ RT R+HT ++ +T TGRL+S Sbjct: 241 LEALREA-HPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSS 299 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IRRAFI+ L++ DYSQIELR+LAH++ L +VF+ D Sbjct: 300 DPNLQNIPVRTPLGQRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRD 359 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+ +FGV E V P MRR AKTIN+ ++YG+S L+ +L IP EA +I+RYF Sbjct: 360 IHTETASWMFGVPREAVDPLMRRTAKTINYGVLYGMSAHHLSQELAIPYEEAQAFIERYF 419 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IEKT R+ GYVET+FGRR + ++ + S+R ER A N P+QG+A Sbjct: 420 QSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTA 479 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + LE+ + +MLLQ+HDELV E P+E +++ ME P Sbjct: 480 ADLMKLAMVKLLPRLEE--MGARMLLQVHDELVLEAPKERAEAVARLAKEVME-GVYP-- 534 Query: 957 NLRVPLKVNIKVSNNW 972 L VPL+V + + +W Sbjct: 535 -LAVPLEVEVGIGEDW 549 >gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521] gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521] gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] Length = 956 Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 205/524 (39%), Positives = 314/524 (59%), Gaps = 26/524 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK EN+ K+ H+ K L++ I+++ F+ D + +Y+LDS +S +++ + +K Sbjct: 455 LKNVMENDKVKKVIHDGKNLVTFLNKNNITVKEFDFDTAIAAYLLDSAQSKYNLTELIEK 514 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 +L+ KEI D E+ + I +L+++L+ + EK+ +Y Sbjct: 515 YLN---KEI--------------DGIESENEGILGSYIPKLYMILKSNIEKEKMDKLYYE 557 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+I V+S ME G I+Q +L ++ + + ++ IY+L+ E+FN+SSPKQLG Sbjct: 558 VEHPLIFVLSSMESIGFNINQSMLDELKIKFDSEIQRTQKEIYELADEEFNVSSPKQLGK 617 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF KL P KTKTG + T + LE++ + II I+ +RQ++KI STY + L N Sbjct: 618 ILFEKLDLPIIKKTKTG-YSTNQEVLEKL-LDKHEIIPKIMYYRQITKISSTYVEGLKNV 675 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLISADY 750 I++ R+H+ ++ T TGRL+S +PNLQNIPI+ +LG++IR+ FI L+S DY Sbjct: 676 IDE-DGRIHSNFNQTVTTTGRLSSTDPNLQNIPIRHELGREIRKVFIPLQEGDTLVSCDY 734 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELR+LAHIA + F++ DIH A+E+F V +E V+ MR AK +NF I+Y Sbjct: 735 SQIELRVLAHIAGDENMIDAFKHHSDIHTKTASEVFKVPVEDVTSLMRSRAKAVNFGIVY 794 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 GIS F L+ L+IP++EA +Y+ YF R+P I Y+E + + GYV TI RR Sbjct: 795 GISAFSLSQDLKIPKAEAQEYMNIYFERYPKIKSYLENIVSEAEEKGYVLTILNRRRFIP 854 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 EIN+ ++ + ER A+NAPIQGSAADI + AMI+V+ L++ K+ +K++LQ+HDEL+ Sbjct: 855 EINASNKIVKALGERLAMNAPIQGSAADIIKIAMINVYNKLKESKMQSKLILQVHDELIL 914 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 V E E +I+V ME A I L V L V+I W E Sbjct: 915 NVKENEFEEVKKIVVDEMENA----IKLSVGLDVDINSGKTWYE 954 Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 83/281 (29%), Positives = 128/281 (45%), Gaps = 49/281 (17%) Query: 1 MQKENHLFLVDGSSFIYRAFYATP----LLSRKHD--------------GLPVNAIAGFC 42 M KE +L L+DGSS + +Y + ++ ++ G+ NAI GF Sbjct: 18 MDKE-YLLLIDGSSLLSTQYYGNLPREIMFAKTNEEREAFYEKIMQTSMGIYTNAIYGFM 76 Query: 43 NMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT 102 K+L +E +H AV +D TFR EI DYK R + P L Q L + Sbjct: 77 RTFLKIL----REQKPTHVAVTWDLSRDTFRREIDSDYKGTRGETPSPLKEQFKLCQEIL 132 Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY--DTVKE 160 + +EADD + E E V I++ D D +QLVS T L+ T +E Sbjct: 133 AKMNVMQFMDSKYEADDFCGSIASKLEGE-IPVRILTKDTDYLQLVSENTKLWLMFTTQE 191 Query: 161 EKIDI----------------------EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPG 198 + D+ E V ++GI PE++ L++L GD DNI G+ G Sbjct: 192 KADDLFKKYEIKKSTANIPDKAFELTPELVKSEYGIKPEQVADLKSLVGDKSDNIKGVAG 251 Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 +G +A L+ EYG +EN+ + + +K+ +E I +Y +T Sbjct: 252 VGEASAVPLINEYGTVENLYEHIRNLDKKQEKE-IKDYWKT 291 >gi|322434369|ref|YP_004216581.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9] gi|321162096|gb|ADW67801.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9] Length = 975 Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 202/548 (36%), Positives = 314/548 (57%), Gaps = 31/548 (5%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 L+ E+ K H++K L +GI++ G +D+ML+SY+++ SH + + + Sbjct: 431 LRDALEDAALPKDLHDLKAVLRALEPHGITLAGVRDDVMLLSYLVNPTHGSHTLPDVVAR 490 Query: 512 WLSYTRKEILKSRKSS--IP--------IDKISDSQVQE-----HAIENSNVILQLW--- 553 + + ++K S +P + I QV+E H I + L Sbjct: 491 FTNRALTPVVKGVVSPTLLPESANAIHRVAPILRKQVEEAGLVVHEIPKDDPALGGAVTH 550 Query: 554 -LLLRPKL--IVEK----LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 +L P +V K L+ VYE +D P++ V+ +ME G++ID +L ++S+ ++ + Sbjct: 551 EMLFPPAAAPVVGKADGPLVKVYETIDLPLVPVLLRMEEAGVRIDPAVLNEMSSRLAVEI 610 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666 +L E IY SG +FN++SPKQLGD+LF K+ P K G+ +TAQD+ + ++P Sbjct: 611 DNLAEKIYADSGHRFNINSPKQLGDVLFNKMDLPKPMKYGKGKVVSTAQDVLEELAENHP 670 Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 I ++E RQL K+KSTY D LP+ ++ R R+HT ++ T TGRL+S PNLQNIP + Sbjct: 671 IAALVIEHRQLQKLKSTYLDQLPS-LSDREGRIHTTFNQVGTATGRLSSTNPNLQNIPTR 729 Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 T +G++IR AFI+ P L+SADYSQIELR++AH ++ L + DIH + AAE+F Sbjct: 730 TAIGREIRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLLNAYRTGQDIHTLTAAEVF 789 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 GV+ E + + R AK +NF I+YGISPF LA QL I + A YI+ Y+ R+ GI +I Sbjct: 790 GVDAETMDKETRARAKAVNFGIVYGISPFGLAAQLGIDQKVARTYIETYYDRYKGIKRFI 849 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 ++T VR G V T FGR +I S ++R ER AIN P+QG+AAD+ + AMIS Sbjct: 850 DETLETVRLAGAVSTHFGRVRPIPDIQSRNPNMRGFAERTAINTPLQGTAADLIKLAMIS 909 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 + + + L ++M LQ+HDEL+F+V E ++ H ME +P+ +I Sbjct: 910 LDREIRARGLKSRMTLQVHDELLFDVVPSEAEEMQTLVQHEMENVA----EFSIPIVADI 965 Query: 967 KVSNNWQE 974 + +NW++ Sbjct: 966 GLGDNWRD 973 Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 113/330 (34%), Positives = 172/330 (52%), Gaps = 37/330 (11%) Query: 7 LFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 ++L+D +FI+RA++A P+ +R G+P A F NM+ KL RK+ + A Sbjct: 13 IYLLDSMAFIFRAYHAMQRQRPMSTRT--GIPTAATYVFVNMINKL----RKDFAPVYLA 66 Query: 63 VIFDYPAVTFRNEI---------------------YPDYKANRPKIPEMLLPQLPLVRLA 101 ++D A RNE+ Y YKANR + P L+ Q P +R A Sbjct: 67 AVYDVGAPVHRNELATQLKDVKKFNIKTQQFETTEYGGYKANRVETPPDLIQQQPYIRRA 126 Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161 +AF IP + +GFEADD+I T + G V ++S+DKD+MQLV+ + + K+ Sbjct: 127 LEAFRIPILYYEGFEADDVIGTLSCKLSALGHHVYVVSSDKDMMQLVNDNVSILNPTKDN 186 Query: 162 KI-DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220 I D V G+PPE+++ + AL GD+IDNIPG PGIG K + L+Q++G +E L Sbjct: 187 LILDPAGVEGILGVPPERVIDVMALRGDAIDNIPGAPGIGDKGSVELIQQFGTVEGALDR 246 Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280 A +K+K RE++L E LS++LV + T VPI +E + + + LE Sbjct: 247 AEEVKKKTYRESLLNNRENIMLSKELVTIHTGVPIEYSIEAMRTQPVDNAACRELFSELE 306 Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTE 310 FT L+ +A D P+ ++ TE Sbjct: 307 FTTLLKELAPAVDN-----TPLAFNLKATE 331 >gi|329724656|gb|EGG61162.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU144] Length = 876 Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 208/529 (39%), Positives = 317/529 (59%), Gaps = 21/529 (3%) Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510 +L ++ E+++ KI ++ K + HR GI++ E D+ML SY++D RS D+ S+ Sbjct: 357 HLVQWLEDKNTTKIVYDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVKSVVS 416 Query: 511 KW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + +Y + I K +K IP + I + EH + I + ++ +L + Sbjct: 417 LYGQNYVKDNITIFGKGKKHHIPEEPI----LNEHIASVTEAIAAVTPTMKSQLEDYNQI 472 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 + + L+ P+ ++S+ME GI D + LK++ EI K L L NI++ +GE FN++SP Sbjct: 473 ELLKDLELPLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSP 532 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG +LF L+ P KTKTG + T LE++ G++PII +ILE+RQL+K++STY + Sbjct: 533 KQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEKLQ-GEHPIIDDILEYRQLAKLQSTYVE 590 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L I+K R+HT ++ TGRL+S++PNLQNIPI+ + G+KIR+AF PT K Sbjct: 591 GLQKVISK-DHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAF--KPTSKDS 647 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 ++SADYSQIELR+LAHI + L F N DIH A ++F V ++V MRR AK Sbjct: 648 VILSADYSQIELRVLAHITQDESLKHAFINRHDIHTATAMKVFNVESDQVDSLMRRQAKA 707 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ + GYVET+ Sbjct: 708 VNFGIVYGISDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLL 767 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I S ++R+ ER A+N PIQGSAADI + AM+ + +++ K K+LLQ Sbjct: 768 HRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQ 827 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE+P+ E+ S+ + ME+A + L VPLKV+ W Sbjct: 828 VHDELIFEIPKSEVEDFSKFVEEIMEQALV----LDVPLKVDSNYGATW 872 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 107/295 (36%), Positives = 164/295 (55%), Gaps = 15/295 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS H G+ NA+ GF +L K++ KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKII----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178 + A++E F II+ D+DL QL + +Y T K+ D++H K+ G+ P++ Sbjct: 117 SRQADEEDFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPKFIAEKYNGLVPKQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ ++E + + + KK +E ++ + Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKD 235 Query: 239 TARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVATT 291 A +S+ L + PI + LE L L+D + I K LEF +L+ + T+ Sbjct: 236 DALMSKDLATINVHSPIEVSLEDTKLTLQDDTTEK-IELFKKLEFKQLLADIDTS 289 >gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1] Length = 833 Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 197/498 (39%), Positives = 304/498 (61%), Gaps = 33/498 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+++ +D +L++Y+LD ++ + +A+++ + Sbjct: 364 REGVALDPTDDPLLVAYLLDPANTNPE--GVARRY----------------------GGE 399 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A E + + +L+ L P+L EKLL +Y+ +++P+ V++ ME G+++D LL+ Sbjct: 400 FTEDAAERALLSERLFQNLFPRL-SEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQD 656 +S E+ K + LE I+ L+G FNL+S QL +LF +L P G KTG+ ++TAQ Sbjct: 459 LSFELEKEMERLEGEIFRLAGHPFNLNSRDQLERVLFDELGLTPVGRTEKTGK-RSTAQG 517 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + G +PI++ IL++R+LSK+KSTY D LP ++ RT R+HT ++ +T TGRL+S Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSS 577 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IR+AF++ L++ADYSQIELR+LAH++ L +VF D Sbjct: 578 DPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKD 637 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH AA +FG++ V P+MRR AKT+NF ++YG+S RL+ +L I EA +I+RYF Sbjct: 638 IHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLYGMSAHRLSQELGIDYKEAEAFIERYF 697 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IE+T R GYVET+FGRR + ++ S S+R ER A N P+QG+A Sbjct: 698 QSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTA 757 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + L+ L +LLQ+HDELV EVPE+ A ++ ME A Sbjct: 758 ADLMKIAMVKLFPRLK--PLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENAY---- 811 Query: 957 NLRVPLKVNIKVSNNWQE 974 L VPL+V + V +W E Sbjct: 812 PLDVPLEVEVGVGRDWLE 829 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 108/284 (38%), Positives = 154/284 (54%), Gaps = 12/284 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + LVDG YR FYA L + + G PV + GF L K L+ + + V+ Sbjct: 12 KRVLLVDGHHLAYRTFYALSLTTSR--GEPVQMVYGFARSLLKALKEDGQAVV-----VV 64 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD A +FR+E Y YKA R PE QL LV+ G+ +E G+EADD++ T Sbjct: 65 FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTL 124 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 AE+EG V I++ D+D QL+S + L D D++ +K+G+PPE+ V Sbjct: 125 AKKAEREGMEVRILTGDRDFFQLLSEKVSVLLPDGTLVTPKDVQ---EKYGVPPERWVDF 181 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +ALTGD DNIPG+ GIG KTA LL E+G++EN+L N R+K R I + E L Sbjct: 182 RALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSVRRKIEAHLEDLHL 241 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 S L +RTD+P+ + + L + L +FL+ LEF L++ Sbjct: 242 SLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFLEELEFGSLLH 285 >gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans] Length = 903 Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 193/512 (37%), Positives = 303/512 (59%), Gaps = 16/512 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFEDIM-LMSYVLDSGRSSHDIASIAQKW----LSYTRKEIL 521 H+ ++ L +G++ RG + +Y+LD S H +A +++++ + Sbjct: 398 HDSHRAEVALFWHGLAFRGTSFCTHIAAYLLDPTESRHTLADLSRRYGLPPVPEAEDVYG 457 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +P + + + ++ +L LL L + ++ L+ P+ ++ Sbjct: 458 KGAKFKVP----DRDTLARYVGRKAALVARLVPLLEADLAACGMRSLFYDLELPLSSELA 513 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME G+++D L E+ + +E IY+L+G FN+ S KQLG+ILF KL P Sbjct: 514 VMETVGVRVDAAALAAYGEELREAAAKVEREIYELAGTTFNIGSTKQLGEILFDKLGLPV 573 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG + T A LE++ +PI++ IL +RQL+K++STY + L I +T ++HT Sbjct: 574 VKKTKTG-YSTDADVLEEL-APYHPIVEKILHYRQLTKLQSTYIEGLLKEIRPQTGKIHT 631 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 +Y TGRL+S PNLQNIPI+ + G+KIR+AF+ S P +++ADYSQIELR+LAH Sbjct: 632 YYQQTIAATGRLSSQFPNLQNIPIRLEEGRKIRKAFVPSEPGWLMLAADYSQIELRVLAH 691 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L + F +DIH A ++FGV+ ++V +MRR AK +NF IIYGIS F LA Sbjct: 692 VSGDERLKEAFRTGMDIHTKTAMDVFGVSEDRVDARMRRQAKAVNFGIIYGISDFGLAQN 751 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I R EAA++I++YF F G+ Y E+ R++GYV T+ GRR + +IN+ ++R Sbjct: 752 LNISRKEAAEFIRQYFAVFSGVKAYRERIVEQARRDGYVTTLLGRRRYLPDINASNYNLR 811 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 + ER A+N PIQG+AADI + AM+ + + + D L ++MLLQ+HDELVFEVP +E+ Sbjct: 812 SFAERTAMNTPIQGTAADIIKTAMVRLTRRMRDVGLKSRMLLQVHDELVFEVPPDELDAM 871 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ ME A + L VPLKV++ +W Sbjct: 872 RELVTDVMESA----VPLDVPLKVDVSWGADW 899 Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 121/320 (37%), Positives = 181/320 (56%), Gaps = 13/320 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDG+S RAFYA LLS + GL NA+ GF NML KL++ R +HF V FD Sbjct: 4 LILVDGNSVANRAFYAVRLLSTR-GGLHTNAVYGFANMLLKLIEEERP----THFLVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ Y YKA R + P L Q P +R +AFG+ + E++ +EADD+I T Sbjct: 59 AGKATFRHREYEAYKAGRLQTPPELSEQFPYIRELVRAFGVASGELEEYEADDMIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCL 182 AE EG +++ D+DL+QLVS + T K E+ D + +++G P+++ L Sbjct: 119 RAEAEGVDTLVVTGDRDLLQLVSDRVTVALTRKGITETERYDPARIREEYGFDPDRIRDL 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD+ DN+PG+PG+G KTA LL++YG+LE++L +AS I K EN+ +A+ ARL Sbjct: 179 KGLMGDASDNLPGVPGVGEKTALKLLRQYGSLESVLEHASEIAGKL-GENLRAHADAARL 237 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAANI 299 S++L + VP+ + L L + + L S L+ LEF L+ R+ T+ D D + Sbjct: 238 SKRLATIDCAVPLQSGWDWLRLGEPDRAALASLLRQLEFKSLLKRLGLDGTSADADVDGV 297 Query: 300 EPVVLDINTTENKGIAIETE 319 + + +A+ E Sbjct: 298 RSSARPADEKRPRAVAVAEE 317 >gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228] gi|27315831|gb|AAO04966.1|AE016748_200 DNA polymerase I [Staphylococcus epidermidis ATCC 12228] Length = 903 Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 208/529 (39%), Positives = 317/529 (59%), Gaps = 21/529 (3%) Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510 +L ++ E+++ KI ++ K + HR GI++ E D+ML SY++D RS D+ S+ Sbjct: 384 HLVQWLEDKNTTKIVYDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVKSVVS 443 Query: 511 KW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + +Y + I K +K IP + I + EH + I + ++ +L + Sbjct: 444 LYGQNYVKDNITIFGKGKKHHIPEEPI----LNEHIASVTEAIAAVTPTMKSQLEDYNQI 499 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 + + L+ P+ ++S+ME GI D + LK++ EI K L L NI++ +GE FN++SP Sbjct: 500 ELLKDLELPLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSP 559 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG +LF L+ P KTKTG + T LE++ G++PII +ILE+RQL+K++STY + Sbjct: 560 KQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEKLQ-GEHPIIDDILEYRQLAKLQSTYVE 617 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L I+K R+HT ++ TGRL+S++PNLQNIPI+ + G+KIR+AF PT K Sbjct: 618 GLQKVISK-DHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAF--KPTSKDS 674 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 ++SADYSQIELR+LAHI + L F N DIH A ++F V ++V MRR AK Sbjct: 675 VILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKA 734 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ + GYVET+ Sbjct: 735 VNFGIVYGISDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLL 794 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I S ++R+ ER A+N PIQGSAADI + AM+ + +++ K K+LLQ Sbjct: 795 HRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQ 854 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE+P+ E+ S+ + ME+A + L VPLKV+ W Sbjct: 855 VHDELIFEIPKSEVEDFSKFVEEIMEQALV----LDVPLKVDSNYGATW 899 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 107/295 (36%), Positives = 165/295 (55%), Gaps = 15/295 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS H G+ NA+ GF +L K++ KE +HF V Sbjct: 29 NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKII----KEEKPNHFLVA 83 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 84 FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 143 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178 + A++E F II+ D+DL QL + +Y T K+ D++H K+ G+ P++ Sbjct: 144 SRQADEEDFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPKFIAEKYNGLVPKQ 202 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ ++E + + + KK +E ++ + Sbjct: 203 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKD 262 Query: 239 TARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVATT 291 A +S+ L + PI + LE L L+D + + I K LEF +L+ + T+ Sbjct: 263 DALMSKDLATINVHSPIEVSLEDTKLTLQD-DTTKKIELFKKLEFKQLLADIDTS 316 >gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363] Length = 877 Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 200/492 (40%), Positives = 302/492 (61%), Gaps = 17/492 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543 D ML Y++ S + I++IA+ + L+ + K K ++P D+I + +H Sbjct: 396 DAMLAKYLI-STTEDNKISTIARLFDVGHLATDEEIFGKGTKLALPDDEI----LFDHLA 450 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 V+ + + +LI + H+ ++ P+ +V+++MEITGI + Q+ L+++ AE Sbjct: 451 RKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEIGAENE 510 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L SL IYDL+GE+FN++SPKQLG ILF KL+ P G KTKTG +TA D+ + Sbjct: 511 EKLASLTREIYDLAGEEFNINSPKQLGVILFEKLQLPVGKKTKTGY--STAVDVLEDLAA 568 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 +P++ ILE+RQ++K +STY L I ++HT Y T TGRL+S++PNLQNI Sbjct: 569 LSPVVAKILEYRQINKEQSTYVKGLIPQI-ADDGKIHTRYVQDLTQTGRLSSVDPNLQNI 627 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 P++ + G+KIR+AF+ L+S+DYSQIELR+LAHI+ L F++ DIH A Sbjct: 628 PVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAM 687 Query: 784 EIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +FG+ E V+ RR+AK +NF ++YGIS F LA L I R +A +YI+ YF R+PGI Sbjct: 688 RVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGI 747 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+E R G+VET+ RR +IN+ ++R ER AIN+PIQGSAADI + Sbjct: 748 KTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKI 807 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI++ K+L + + +K+LLQ+HDE++ +VP EE+ ++ +ME+A I L VPL Sbjct: 808 AMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEA----IELAVPL 863 Query: 963 KVNIKVSNNWQE 974 KV+ W E Sbjct: 864 KVDDNTGKTWYE 875 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 107/297 (36%), Positives = 166/297 (55%), Gaps = 13/297 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M+ +N L L+DGSS +RAF+A L R +GL NAI F ML L++ + Sbjct: 1 MEDKNRLLLIDGSSVAFRAFFALYNQLDRFKAPNGLHTNAIFAFHTMLSSLMERIQ---- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H + FD TFR E++ DYK R K P+ QLP ++ + GI E+ +EA Sbjct: 57 PTHVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEA 116 Query: 118 DDIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171 DDII T +AE F VTI++ DKD++QLV T + + K E+ +++++K Sbjct: 117 DDIIGTLDKMAEAPDVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEK 176 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 G+ P + + L+AL GDS DN PG+ +G KT LLQE+G+LEN+ N +K K ++ Sbjct: 177 MGLTPSQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVETLKASKMKD 236 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 N++ E A LS++L + T P+ I LE +L++ N L F + F++ +++ Sbjct: 237 NLIADKEMAFLSQQLATINTKAPLEIGLEDTLLKEKNVAELGQFYDEMGFSQFKSKL 293 >gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1] Length = 830 Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 200/497 (40%), Positives = 304/497 (61%), Gaps = 33/497 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R GI++ +D ML++Y+LD ++ + +A+++ + Sbjct: 360 REGIALAPGDDPMLLAYLLDPSNTAPE--GVARRY----------------------GGE 395 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 E A E + + +L+ L +L E +LL +YE ++KP+ V++ ME TG+++D LK Sbjct: 396 WTEEAGERALLSERLYAALLERLKGEERLLWLYEEVEKPLSRVLAHMEATGVRLDVAYLK 455 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQ 655 +S E+ L LEE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 456 ALSLEVEAELRRLEEEVHRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAA 515 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE + +PI+ IL++R+LSK+K TY D LP ++ +T R+HT ++ +T TGRL+S Sbjct: 516 VLEALREA-HPIVDRILQYRELSKLKGTYIDPLPALVHPKTNRLHTRFNQTATATGRLSS 574 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP++T LGQ+IRRAF++ KL+ DYSQIELR+LAH++ L +VF+ Sbjct: 575 SDPNLQNIPVRTPLGQRIRRAFVAEEGWKLVVLDYSQIELRVLAHLSGDENLIRVFQEGQ 634 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+ +FGV E V MRR AKTINF ++YG+S RL+ +L IP EA +I+RY Sbjct: 635 DIHTQTASWMFGVPPEAVDSLMRRAAKTINFGVLYGMSAHRLSGELAIPYEEAVAFIERY 694 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P + +IEKT R+ GYVET+FGRR + ++ S SIR ER A N P+QG+ Sbjct: 695 FQSYPKVRAWIEKTLAEGRERGYVETLFGRRRYVPDLASRVKSIREAAERMAFNMPVQGT 754 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD+ + AM+ + L++ L +MLLQ+HDELV E P+E+ +Q +ME+ Sbjct: 755 AADLMKLAMVKLFPRLQE--LGARMLLQVHDELVLEAPKEQAEEVAQEAKRTMEEVW--- 809 Query: 956 INLRVPLKVNIKVSNNW 972 L+VPL+V + + +W Sbjct: 810 -PLKVPLEVEVGIGEDW 825 Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 112/301 (37%), Positives = 163/301 (54%), Gaps = 9/301 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L+ I Sbjct: 5 FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALREDGDVVI--- 60 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR++ Y YKA R PE QL L++ G+ +E+ GFEADD+ Sbjct: 61 --VVFDAKAPSFRHQTYEAYKAGRAPTPEDFPRQLALIKEMVDLLGLERLEVPGFEADDV 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 +AT AEKEG+ V I++ D+DL QL+S + + I E + +K+G+ P + V Sbjct: 119 LATLAKKAEKEGYEVRILTADRDLYQLLSERISILHP-EGYLITPEWLWEKYGLKPSQWV 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DNIPG+ GIG KTAA L++E+G+LEN+L + ++K RE IL + E Sbjct: 178 DYRALAGDPSDNIPGVKGIGEKTAAKLIREWGSLENLLKHLEQVKPASVREKILSHMEDL 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +LS +L +RTD+P+ + D G L +FL+ LEF L++ AA Sbjct: 238 KLSLELSRVRTDLPLQVDFARRREPDREG--LKAFLERLEFGSLLHEFGLLESPVAAEEA 295 Query: 301 P 301 P Sbjct: 296 P 296 >gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2] Length = 833 Score = 354 bits (908), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 196/498 (39%), Positives = 304/498 (61%), Gaps = 33/498 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+++ +D +L++Y+LD ++ + +A+++ + Sbjct: 364 REGVALDPTDDPLLVAYLLDPANTNPE--GVARRY----------------------GGE 399 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A E + + +L+ L P+L EKLL +Y+ +++P+ V++ ME G+++D LL+ Sbjct: 400 FTEDAAERALLSERLFQNLFPRL-SEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQD 656 +S E+ K + LE ++ L+G FNL+S QL +LF +L P G KTG+ ++TAQ Sbjct: 459 LSFELEKEMERLEGEVFRLAGHPFNLNSRDQLERVLFDELGLTPVGRTEKTGK-RSTAQG 517 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + G +PI++ IL++R+LSK+KSTY D LP ++ RT R+HT ++ +T TGRL+S Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSS 577 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IR+AF++ L++ADYSQIELR+LAH++ L +VF D Sbjct: 578 DPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKD 637 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH AA +FG++ V P+MRR AKT+NF ++YG+S RL+ +L I EA +I+RYF Sbjct: 638 IHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLYGMSAHRLSQELGIDYKEAEAFIERYF 697 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IE+T R GYVET+FGRR + ++ S S+R ER A N P+QG+A Sbjct: 698 QSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTA 757 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + L+ L +LLQ+HDELV EVPE+ A ++ ME A Sbjct: 758 ADLMKIAMVKLFPRLK--PLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENAY---- 811 Query: 957 NLRVPLKVNIKVSNNWQE 974 L VPL+V + V +W E Sbjct: 812 PLDVPLEVEVGVGRDWLE 829 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 108/284 (38%), Positives = 154/284 (54%), Gaps = 12/284 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + LVDG YR FYA L + + G PV + GF L K L+ + + V+ Sbjct: 12 KRVLLVDGHHLAYRTFYALSLTTSR--GEPVQMVYGFARSLLKALKEDGQAVV-----VV 64 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD A +FR+E Y YKA R PE QL LV+ G+ +E G+EADD++ T Sbjct: 65 FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTL 124 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 AE+EG V I++ D+D QL+S + L D D++ +K+G+PPE+ V Sbjct: 125 AKKAEREGMEVRILTGDRDFFQLLSEKVSVLLPDGTLVTPKDVQ---EKYGVPPERWVDF 181 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +ALTGD DNIPG+ GIG KTA LL E+G++EN+L N R+K R I + E L Sbjct: 182 RALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSLRRKIEAHLEDLHL 241 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 S L +RTD+P+ + + L + L +FL+ LEF L++ Sbjct: 242 SLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFLEELEFGSLLH 285 >gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721] gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721] Length = 866 Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 211/573 (36%), Positives = 338/573 (58%), Gaps = 30/573 (5%) Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463 ++ + I + L+++ ++ +++ IFI+ + + +E + K+FFENE L Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELVKEEENIKAFKEFFENEDIL 375 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K G++IK L + GI G D L +Y++DS + +++ S+ +LS Sbjct: 376 KNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYNLLSLINNYLS-------- 427 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K + + E + + + +L L+L+ K+ EK+ + ++ P+ V+S Sbjct: 428 ---------KFPNVKEGEEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME G ++++D+L ++S + + L ++ I++L+ E+FN++SPKQLG ILF KL P Sbjct: 479 MESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T A+ LE++ +PII+ I +RQLSKI STY + L + I+ +H+ Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGS-IHST 595 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILA 759 ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI P K+ LISADYSQIELR+LA Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFI--PKKEGDLLISADYSQIELRVLA 653 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 HI+ + F + DIH A+E+F V +E+V+P MR AK +NF I+YGI F L+ Sbjct: 654 HISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ 713 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA +Y+ YF R+P I EYI K + + GYV T+ RR + E N+ + Sbjct: 714 DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIV 773 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 + + ER A+NAPIQG+AADI + AM++V+ L++ L +K++LQ+HDEL+ V + E+ Sbjct: 774 KALGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ ME I L VPL V++ V +W Sbjct: 834 VKKLLKEEMENT----IKLSVPLDVDVNVGEDW 862 Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG+S + RAFYA PLLS +G NAI GF NML+K+ R++ + F Sbjct: 3 RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR+ Y DYKA R K+P L Q P+V+ + F I E+ GFEADDII + Sbjct: 58 DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 +AE EG V I++ DKD +QL + + T K E + + +++++G+ P + + Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GD DNIPG+PG+G KTA L++EYG++E +L N I KK +EN+ EY+E A Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237 Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289 S+KL + T+VPI L+ + +D N +L + L+ ++++++ Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286 >gi|3913510|sp|O52225|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI polymerase 1 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis] Length = 833 Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 196/498 (39%), Positives = 303/498 (60%), Gaps = 33/498 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+++ +D +L++Y+LD + + +A+++ + Sbjct: 364 REGVALDPTDDPLLVAYLLDPANTHPE--GVARRY----------------------GGE 399 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A E + + +L+ L P+L EKLL +Y+ +++P+ V++ ME G+++D LL+ Sbjct: 400 FTEDAAERALLSERLFQNLFPRL-SEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQD 656 +S E+ K + LE ++ L+G FNL+S QL +LF +L P G KTG+ ++TAQ Sbjct: 459 LSFELEKEMERLEGEVFRLAGHPFNLNSRDQLERVLFDELGLTPVGRTEKTGK-RSTAQG 517 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + G +PI++ IL++R+LSK+KSTY D LP ++ RT R+HT ++ +T TGRL+S Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSS 577 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IR+AF++ L++ADYSQIELR+LAH++ L +VF D Sbjct: 578 DPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKD 637 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH AA +FG++ V P+MRR AKT+NF ++YG+S RL+ +L I EA +I+RYF Sbjct: 638 IHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLYGMSAHRLSQELGIDYKEAEAFIERYF 697 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IE+T R GYVET+FGRR + ++ S S+R ER A N P+QG+A Sbjct: 698 QSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTA 757 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + L+ L +LLQ+HDELV EVPE+ A ++ ME A Sbjct: 758 ADLMKIAMVKLFPRLK--PLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENAY---- 811 Query: 957 NLRVPLKVNIKVSNNWQE 974 L VPL+V + V +W E Sbjct: 812 PLDVPLEVEVGVGRDWLE 829 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 108/284 (38%), Positives = 154/284 (54%), Gaps = 12/284 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + LVDG YR FYA L + + G PV + GF L K L+ + + V+ Sbjct: 12 KRVLLVDGHHLAYRTFYALSLTTSR--GEPVQMVYGFARSLLKALKEDGQAVV-----VV 64 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD A +FR+E Y YKA R PE QL LV+ G+ +E G+EADD++ T Sbjct: 65 FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTL 124 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 AE+EG V I++ D+D QL+S + L D D++ +K+G+PPE+ V Sbjct: 125 AKKAEREGMEVRILTGDRDFFQLLSEKVSVLLPDGTLVTPKDVQ---EKYGVPPERWVDF 181 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +ALTGD DNIPG+ GIG KTA LL E+G++EN+L N R+K R I + E L Sbjct: 182 RALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSLRRKIEAHLEDLHL 241 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 S L +RTD+P+ + + L + L +FL+ LEF L++ Sbjct: 242 SLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFLEELEFGSLLH 285 >gi|232010|sp|P30313|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl polymerase 1 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus] Length = 831 Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 192/497 (38%), Positives = 304/497 (61%), Gaps = 33/497 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+ + +D ML++Y+LD ++ + +A+++ + Sbjct: 361 REGLDLFPEDDPMLLAYLLDPSNTTPE--GVARRY----------------------GGE 396 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 E A E + + +L+ L+ +L E +LL +YE ++KP+ V+++ME TG+++D L+ Sbjct: 397 WTEDAGERALLAERLFQTLKERLKGEERLLWLYEEVEKPLSRVLARMEATGVRLDVAYLQ 456 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQ 655 +S E+ + LEE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 457 ALSLEVEAEVRQLEEEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAA 516 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE + +PI+ IL++R+L+K+K+TY D LP ++ +T R+HT ++ +T TGRL+S Sbjct: 517 VLEALREA-HPIVDRILQYRELTKLKNTYIDPLPALVHPKTGRLHTRFNQTATATGRLSS 575 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP++T LGQ+IRRAF++ L+ DYSQIELR+LAH++ L +VF+ Sbjct: 576 SDPNLQNIPVRTPLGQRIRRAFVAEEGWVLVVLDYSQIELRVLAHLSGDENLIRVFQEGR 635 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+ +FGV+ E V P MRR AKTINF ++YG+S RL+ +L IP EA +I+RY Sbjct: 636 DIHTQTASWMFGVSPEGVDPLMRRAAKTINFGVLYGMSAHRLSGELSIPYEEAVAFIERY 695 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P + +IE T R+ GYVET+FGRR + ++N+ S+R ER A N P+QG+ Sbjct: 696 FQSYPKVRAWIEGTLEEGRRRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGT 755 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD+ + AM+ + L++ L +MLLQ+HDELV E P++ + + ME Sbjct: 756 AADLMKLAMVRLFPRLQE--LGARMLLQVHDELVLEAPKDRAERVAALAKEVMEGVW--- 810 Query: 956 INLRVPLKVNIKVSNNW 972 L+VPL+V + + +W Sbjct: 811 -PLQVPLEVEVGLGEDW 826 Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 111/311 (35%), Positives = 159/311 (51%), Gaps = 30/311 (9%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L+ Sbjct: 7 FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALKED-----GDV 60 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR+E Y YKA R PE QL L++ G+ +E+ GFEADD+ Sbjct: 61 VVVVFDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGLVRLEVPGFEADDV 120 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIK 170 +AT AEKEG+ V I++ D+DL QL+S E+I I H + + Sbjct: 121 LATLAKRAEKEGYEVRILTADRDLYQLLS-----------ERIAILHPEGYLITPAWLYE 169 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K+G+ PE+ V +AL GD DNIPG+ GIG KTA L++E+G+LEN+ + ++K R Sbjct: 170 KYGLRPEQWVDYRALAGDPSDNIPGVKGIGEKTAQRLIREWGSLENLFQHLDQVK-PSLR 228 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 E + E LSRKL + TD+P+ + + G R +FL+ LEF L++ Sbjct: 229 EKLQAGMEALALSRKLSQVHTDLPLEVDFGRRRTPNLEGLR--AFLERLEFGSLLHEFGL 286 Query: 291 TYDCDAANIEP 301 AA P Sbjct: 287 LEGPKAAEEAP 297 >gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873] gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873] Length = 881 Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 200/520 (38%), Positives = 315/520 (60%), Gaps = 26/520 (5%) Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSY 515 FE+++ KI H+IK +VL +Y I + F D + SY+L+ +S Y Sbjct: 384 FEDKNIKKISHDIKNVYVVLRKYDIDAKNFIFDTKIASYLLEPSKSD------------Y 431 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 +EI+ K SI ID DS +E I+ + I +++ L+ ++ + ++ ++ P Sbjct: 432 ILREII-LEKLSINID---DSD-EECKIKETYCIKEIYEKLQKEIKEANMEELFYNVELP 486 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + V++ ME G ++D+D L ++ + + LE+ I+ L+GE FN+ SPKQLG ILF Sbjct: 487 LTKVLASMECEGFKVDKDRLTEIGEKFKAEIKMLEKEIHKLAGEDFNIKSPKQLGKILFE 546 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 KL P KTKTG + T A+ LE++ +PII I+++RQ++K+ STY + L H+ Sbjct: 547 KLDLPVIKKTKTG-YSTNAEVLEKLK-DSHPIISKIIDYRQITKLDSTYVEGLK-HVIDE 603 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754 ++H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ F++ + +I SADYSQIE Sbjct: 604 DGKIHSSFNQTVTTTGRLSSTEPNLQNIPIKHEMGREIRKVFVANNEESVIFSADYSQIE 663 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LR+LAHIA L F++ DIH + A+E+F V +E+V+P MR +AK +NF I+YGI Sbjct: 664 LRVLAHIANDEKLIDAFKHHKDIHTITASEVFRVPVEEVTPLMRSNAKAVNFGIVYGIGA 723 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 F L+ + + R EA +YI YF R+P + +YI+ N Q+G+V TI R+ + EI S Sbjct: 724 FSLSKDINVSRKEAKEYIDTYFSRYPNVKKYIDDIINKSEQDGFVTTIMNRKRYIPEIQS 783 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 +R+ ER A+N PIQGSAADI + AM+ V++ L L + ++LQ+HDEL+ V + Sbjct: 784 RNRIVRSFGERLAMNTPIQGSAADIIKLAMVHVYEELIKRNLKSTLILQVHDELILNVYK 843 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +E+ Q++V ME +NL VPL+ ++ + W E Sbjct: 844 DELEEVKQMVVEKMEGV----MNLLVPLEADVNIGITWYE 879 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 120/299 (40%), Positives = 173/299 (57%), Gaps = 17/299 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L ++DG S +YRAF+A P L+ K +G+ NAI GF ML K+ KE I + Sbjct: 1 MNKE-RLLILDGHSLMYRAFFALPPLTNK-EGIHTNAIYGFIKMLLKM-----KEEIKPN 53 Query: 61 FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + VI FD A TFR++ Y DYKA R K+P L Q P+V+ I EI GFEADD Sbjct: 54 YIVIAFDKKAPTFRHKEYEDYKAGREKMPSELNEQFPIVKDILNKLAINIFEIDGFEADD 113 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175 +I T + AE +G V I++ DKD +QL + + K +E D + +I+++ + Sbjct: 114 LIGTLSEFAEGKGIEVYIVTGDKDALQLATDNVKIVINKKGMSEKEIYDRKRMIEEYEVT 173 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P + + ++ L GD DNIPG+PGIG KTA L++EYG++EN+L N I KK ++N++E Sbjct: 174 PTQFIDVKGLMGDKSDNIPGVPGIGTKTAFKLIKEYGSIENVLDNVENISGKKMKQNLIE 233 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINRVATT 291 Y E A S+KL + +VPI I LE + + D G R ++L F LI + + Sbjct: 234 YREQAIFSKKLATICKNVPIEIDLEEIKSKENYDIEGVR--QLFESLGFKTLIKNIDNS 290 >gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101] gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101] Length = 866 Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 210/571 (36%), Positives = 336/571 (58%), Gaps = 26/571 (4%) Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463 ++ + I + L+++ ++ +++ IFI+ + + +E + LK+FFENE L Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELAQEEENIKALKEFFENEDIL 375 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K G++IK L + GI +G D L +Y++DS + + + S+ +LS Sbjct: 376 KNGYSIKNALTALKKLGIEFKGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-------- 427 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K + + E + + + +L L+L+ K+ EK+ + ++ P+ V+S Sbjct: 428 ---------KFPNVKDGEEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME G ++++D+L ++S + + L ++ I++L+ E+FN++SPKQLG ILF KL P Sbjct: 479 MESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T A+ LE++ +PII+ I +RQLSKI STY + L + I+ +H+ Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGS-IHST 595 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHI 761 ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI L ISADYSQIELR+LAHI Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFIPKEEGDLLISADYSQIELRVLAHI 655 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 + + F + DIH A+E+F V +E+V+P MR AK +NF I+YGI F L+ L Sbjct: 656 SGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQDL 715 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I R EA +Y+ YF R+P I EYI K + + GYV T+ RR + E N+ ++ Sbjct: 716 NISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIVKA 775 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 + ER A+NAPIQG+AADI + AM++V+ L++ L +K++LQ+HDEL+ V + E+ Sbjct: 776 LGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVK 835 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ ME I L VPL V++ V +W Sbjct: 836 KLLKEEMENT----IKLSVPLDVDVNVGEDW 862 Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 112/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG+S + RAFYA PLLS +G NAI GF NML+K+ R++ + F Sbjct: 3 RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR+ Y DYKA R K+P L Q P+V+ + F I E+ GFEADDII + Sbjct: 58 DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 +AE EG V II+ DKD +QL + + T K E + + +++++G+ P + + Sbjct: 118 KVAEGEGIEVYIITGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GD DNIPG+PG+G KTA L++EYG++E +L N I KK +EN+ EY+E A Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237 Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289 S+KL + T+VPI L+ + +D N +L + L+ ++++++ Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286 >gi|332364060|gb|EGJ41837.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK49] Length = 880 Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 207/515 (40%), Positives = 308/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRTKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ +H V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----EQEQLFKHLARKIQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + AE K L SL + IYDL+G++FN++SPKQLG ILF + P Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADG-KIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878 Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 166/302 (54%), Gaps = 19/302 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R + GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHFYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293 Query: 289 AT 290 T Sbjct: 294 GT 295 >gi|154502707|ref|ZP_02039767.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149] gi|153796590|gb|EDN79010.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149] Length = 871 Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 179/419 (42%), Positives = 270/419 (64%), Gaps = 7/419 (1%) Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615 L KL E++ ++ ++ P++ + ME G++I+ + LK+ ++ + ++ LE IY+ Sbjct: 458 LMEKLKEEQMDRLFLEIEMPLVFTLFDMEQAGVRIEAEELKKYGEQLGEQIVQLESEIYE 517 Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675 ++GE FN++SPKQLG ILF KL+ P KTKTG + T A LE++ + PI+ ILE+R Sbjct: 518 MAGENFNINSPKQLGVILFEKLQMPHAKKTKTG-YSTAADVLEKL-APEFPIVDKILEYR 575 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 QL+K+KSTYAD L N+I R+H ++ T TGR++S EPNLQNIP++ +LG+ IR+ Sbjct: 576 QLTKLKSTYADGLANYIGP-DGRIHGTFNQTITATGRISSTEPNLQNIPVRMELGRLIRK 634 Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F+ I ADYSQIELRILAH + L Q + + DIHRM A+++F ++V+ Sbjct: 635 VFVPQEGYVFIDADYSQIELRILAHCSGDAHLIQAYREAQDIHRMTASQVFKTPFDEVTD 694 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 RR+AK +NF I+YGIS F L+ L I R EA+ YI+ YF +PGI ++++ + ++ Sbjct: 695 LQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASQYIESYFETYPGIKKFLDDSVTHAKE 754 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GY T+FGRR E+ S RN ER A+NAPIQG+AADI + AMI V++ L++ + Sbjct: 755 EGYAVTLFGRRRPIPELKSSNFMQRNFGERVAMNAPIQGTAADIMKIAMIGVNRELKEKR 814 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++M+LQ+HDEL+ E +EI T +I+ ME A +L VPL +++V NW E Sbjct: 815 MKSRMILQVHDELLIETHPDEIETVKEILKRQMETAA----SLDVPLIADMQVGKNWYE 869 Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 100/300 (33%), Positives = 166/300 (55%), Gaps = 15/300 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ +GL NA+ GF N+L+K+L+ + E + V FD Sbjct: 5 IVLIDGHSILNRAFYGVPDLTNA-EGLHTNAVYGFLNILFKILEEEKPE----YLTVTFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+E++ DYK R + E L Q+P+++ +A I IE G EADD++ T + Sbjct: 60 VHAPTFRHEMFADYKGTRKPMAEELRQQVPVIKEVLKAMDIAIIEKAGLEADDLLGTISR 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180 E++G V +IS D+D +QL + + K + +IE V +++ + P + + Sbjct: 120 TCEEKGMEVAVISGDRDTLQLATEHVKIRIPKTKGGRTEIEDYYAADVKERYEVTPTEFI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++AL GD+ DNIPG+PG+G KTA ++ EYG+LEN + +K + +N+ E+ E A Sbjct: 180 DVKALMGDTADNIPGVPGVGEKTATKIIVEYGSLENAYAHVEELKPPRASKNLKEFWEQA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +LS+ L + T + LE + ++ + L+F L+ + +D +AA E Sbjct: 240 KLSKVLATIDTHAELEFSLEDAKHGNMFTKEAYTWFQKLQFKNLLGK----FDVEAAENE 295 >gi|325686398|gb|EGD28428.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK72] Length = 880 Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 207/515 (40%), Positives = 307/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRTKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ EH V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----EQEQLFEHLARKVQVLLETEKPMQEQLRAHNQLDLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + AE K L SL + IY+L+G++FN++SPKQLG ILF + P Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYNLAGQEFNINSPKQLGTILFEDMGLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNGELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 848 VRQLVKETMEAA----IELAVPLVADENAGQTWYE 878 Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 118/303 (38%), Positives = 166/303 (54%), Gaps = 19/303 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+ +N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R Q GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHFYDLPQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQIETLSKFYDEMGFKQLKAQL 293 Query: 289 ATT 291 T+ Sbjct: 294 GTS 296 >gi|323339592|ref|ZP_08079866.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644] gi|323092987|gb|EFZ35585.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644] Length = 885 Score = 353 bits (907), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 220/569 (38%), Positives = 332/569 (58%), Gaps = 25/569 (4%) Query: 418 DDTSFKVETIFIDLSVHTSQD------STGKNTLTKEILSYLKK-----FFENEHFLKIG 466 D+ SF +E D + HTS S G+ ++K++ S LK+ F EN++ Sbjct: 324 DNASFYLE--LADENYHTSPFWGFALLSDGQCYVSKDV-SLLKREPLREFLENKNKTLDV 380 Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 + K + L R GI + D++L+SY+L++ +S+D+ + QK + K + Sbjct: 381 FDGKKTYVSLKRLGIEAESIDFDLLLVSYLLNNTDNSNDLGQLCQKQGYFGVKSDDEVYG 440 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 + +D EH I L L KL H+Y +++P+ V+++MEI Sbjct: 441 KGAKKEICADETFFEHLRSKVFAIAFLKQKLMQKLKDNSQDHLYFEIERPLSIVLAKMEI 500 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 GI+ D++ L+ + + + + LE IY +GE FN++SPKQLG ILF KL P KT Sbjct: 501 AGIKADKETLETMGSRFKEKISDLESLIYQEAGETFNINSPKQLGTILFDKLGLPGAKKT 560 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTG + T LE++ D I+ N+L +RQ +K+KSTY D L ++ + ++VHT Y+ Sbjct: 561 KTG-YSTAVGVLEKLRGND--IVDNVLLYRQFAKLKSTYIDGLIKVMD-QDEKVHTRYTQ 616 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKI 764 T TGRL+S+EPNLQNIP++ + G+KIR+AFI S ++ S+DYSQIELR+LAHI+K Sbjct: 617 TLTTTGRLSSVEPNLQNIPVRLEEGRKIRQAFIPSHQGWEIFSSDYSQIELRVLAHISKD 676 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 + + F++ DIH A +IFG++ ++V+P MRR AK +NF I+YGIS F LA + Sbjct: 677 ENMQKAFKDDFDIHANTAMKIFGLSSPDEVTPNMRRQAKAVNFGIVYGISDFGLAQSIGC 736 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 R +A +++ YF FPG+ Y+ + R GYVET+F RR + + I S + R+ Sbjct: 737 RRDQAKTFMETYFESFPGVKRYMTEIVELARNQGYVETLFKRRRYLEGIRSKNFNQRSFA 796 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER A+N PIQGSAADI + AMI + ++LE +L +MLLQ+HDEL+FE PEEEI ++ Sbjct: 797 ERTAMNTPIQGSAADIIKVAMIKMQETLEKEELKARMLLQVHDELIFEAPEEEIPVLEKL 856 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + M+ A + L VPLKV W Sbjct: 857 VPSVMDSA----VKLDVPLKVESGHGKTW 881 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 114/320 (35%), Positives = 174/320 (54%), Gaps = 14/320 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M ++ L L+DG+S +R FYA + + + HDGL +A+ F ML K+L + + I Sbjct: 1 MTEKQKLLLIDGNSITFRGFYALFMQTERFVNHDGLHTSAVFSFKRMLDKILDDVNPDKI 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 V FD TFR E Y DYKA R K PE L Q P V+ +GI E++ +EA Sbjct: 61 L----VAFDAGKKTFRTEKYSDYKAGRKKTPEELSEQFPYVKKLLDCYGIKHYELKNYEA 116 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T + AEK G+ TI++ D+DL QLV+ T + TVK E H+ +K G Sbjct: 117 DDIIGTMSKEAEKHGYETTIVTGDRDLTQLVTNQTTVALTVKGVTEIEYYTPNHLSEKLG 176 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P ++ L+ L GD+ DN PG+ +G KTA LL +YG +EN+ + K+ K +E++ Sbjct: 177 ISPSQITDLKGLAGDASDNYPGVSKVGEKTALKLLNQYGTIENLYEHIDEFKKSKMKEHL 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 +E E A + L +R D P+ I L + N +L F ++++F K ++ + Sbjct: 237 IEDKEIALTCKNLATIRRDAPLEIGLADIDFAGKNIEKLREFYQSMDFHKFLSELNAEKS 296 Query: 294 CDAANIE--PVVLDINTTEN 311 + +N E P ++++ T EN Sbjct: 297 EEVSNEEELPSIVEL-TFEN 315 >gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14] Length = 871 Score = 353 bits (906), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 179/420 (42%), Positives = 268/420 (63%), Gaps = 7/420 (1%) Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614 +L KL + ++ ++ P++ + ME G++++ + LK+ E+ ++ LE+ IY Sbjct: 457 VLEKKLEENGMFCLFNEIEMPLVFTLYDMEQAGVKVEGEELKRYGEELGARIVELEKEIY 516 Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674 +++GE+FN++SPKQLG ILF KL+ P KTKTG + T A L+++ + PI+ ILE+ Sbjct: 517 EMAGEEFNINSPKQLGVILFEKLEMPHAKKTKTG-YSTAADVLDKL-APEYPIVAKILEY 574 Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734 RQL+K+KSTYAD L N+I R+H+ ++ T TGR++S EPNLQNIP++ +LG+ IR Sbjct: 575 RQLAKLKSTYADGLANYIG-MDGRIHSKFNQTITATGRISSTEPNLQNIPVRMELGRLIR 633 Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794 + F+ + ADYSQIELRILAH + L Q + + DIHRM A+++F V ++V+ Sbjct: 634 KVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVT 693 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 RR+AK +NF I+YGIS F L+ L I R EAA YI+ YF +PGI +++K + + Sbjct: 694 DLQRRNAKAVNFGIVYGISSFGLSQDLSISRKEAAQYIEHYFESYPGIKTFLDKCVSDAK 753 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 + GY ET++GRR E+ S R+ ER A+NAPIQG+AADI + AMI V++ L+ Sbjct: 754 EKGYAETLYGRRRPMPELKSSNFMQRSFGERVAMNAPIQGTAADIIKIAMIHVNEELKKR 813 Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L ++M+LQ+HDEL+ E E E+ QI+ ME A L VPL V++ NW E Sbjct: 814 NLKSRMILQVHDELLIEADETELEEVQQILQDKMEHAA----ELLVPLSVDMHTGKNWYE 869 Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 102/299 (34%), Positives = 171/299 (57%), Gaps = 15/299 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + + L+DG S + RAFY P L+ +GL NA+ GF N+++K+L + E + V Sbjct: 3 DKIVLIDGHSILNRAFYGVPDLTNS-EGLHTNAVYGFLNIMFKILDEEKPE----YLTVT 57 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD A TFR+E++ DYK R + E L Q+P+++ +A I IE G EADD++ T Sbjct: 58 FDVHAPTFRHEMFADYKGTRKPMAEELRQQVPVIKDVLRAMHIEVIEKAGLEADDLLGTL 117 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-DTVKEEKIDIEH-----VIKKWGIPPEK 178 ++ E++G V+IIS D+D +QL + + K+ K ++E V +++G+ P++ Sbjct: 118 SHRCEEKGMDVSIISGDRDTLQLATEHIKIRIPKTKQGKTEVEDYYAADVQERYGVTPKE 177 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + ++AL GD+ DNIPG+PG+G KTA ++Q+Y +EN + +K + +N+ E+ E Sbjct: 178 FIDVKALMGDTADNIPGVPGVGEKTATKIIQQYQTIENAYEHVDELKPPRASKNLKEFWE 237 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A+LS+ L ++ D IT LE+ E+ + LEF L+ R +D +A+ Sbjct: 238 QAQLSKTLATIKLDADITFELENARHENPYTKEAHELFQRLEFKNLLGR----FDVEAS 292 >gi|332364956|gb|EGJ42724.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK355] Length = 880 Score = 353 bits (906), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 206/515 (40%), Positives = 309/515 (60%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRTKVLLSHYGIELPAAAFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P ++ EH V+L+ + +L L++ +++P+ V++ Sbjct: 433 KGAKRALP----EQERLFEHLARKVQVLLETEEPMLEQLRAHDQLNLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + AE K L SL + IYDL+G++FN++SPKQLG ILF + P Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ+SK++STY L I + ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADS-KIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A I L VPL + W E Sbjct: 848 VRKLVKATMEAA----IELAVPLVADENAGQTWYE 878 Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 120/305 (39%), Positives = 167/305 (54%), Gaps = 19/305 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R Q GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHFYDLAQ 113 Query: 115 FEADDIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTVVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVENLSKFYDEMGFKQLKAQL 293 Query: 289 ATTYD 293 T D Sbjct: 294 GTAQD 298 >gi|313902130|ref|ZP_07835540.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965] gi|313467593|gb|EFR63097.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965] Length = 1072 Score = 353 bits (906), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 194/491 (39%), Positives = 290/491 (59%), Gaps = 21/491 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L +Y+LD R+ + + A+++ + +E P D+ D V ++ + Sbjct: 591 DLKLAAYLLDPVRNRYHLVDTARQFFGWDLEEG--------PADRPGDPAVCTSSLLGRD 642 Query: 548 VILQLWLLLRP----KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 L LRP +L L VY ++ P++ V++ ME GI +D+ L+++ + Sbjct: 643 AAL--CARLRPAVEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRLFT 700 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L E IY+L+G+ FN++S +QLG ILF +L P KTKTG + T A+ LE + Sbjct: 701 RRSQELAEQIYELAGQTFNINSTQQLGQILFERLGLPVVKKTKTG-YSTDAEVLETLAA- 758 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 +PI + +LE+R L K++ TY D L HI R+HT + TGRL+S +PNLQNI Sbjct: 759 RHPIAELVLEYRSLVKLQGTYVDGLAEHIGP-DGRIHTTFQQTVAATGRLSSTQPNLQNI 817 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 PI+ + G+ +RRAF++PP +L++ADYSQIELR+LAH + L + F D+H A+ Sbjct: 818 PIRDEPGRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDPGLVEAFAQGQDVHARTAS 877 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 EIFGV +E+V+P+ RR AK +NF + YG + F LA LRI R++A +++RYF R+PG+ Sbjct: 878 EIFGVPLEQVTPEQRRVAKAVNFGLAYGQTDFGLARALRIDRADARRFMERYFERYPGVK 937 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 Y+E+T RQ G V T+ GRR EI IR ER AIN PIQG+AADI + A Sbjct: 938 RYMEETVRRARQQGEVTTLLGRRRPVPEIRHRVFHIRQNAERVAINTPIQGTAADIMKLA 997 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 MI VH++L + L +++LQ+HDEL+ E P+ E+ + ++ ME A L VPL Sbjct: 998 MIRVHRALAEEGLRARIVLQVHDELLVEAPDAEVAAVAALLRREMEGA----FRLDVPLV 1053 Query: 964 VNIKVSNNWQE 974 V +K NW E Sbjct: 1054 VEVKSGANWYE 1064 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 113/294 (38%), Positives = 165/294 (56%), Gaps = 12/294 (4%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 Q E+ L L+DG S +YRAF+A P L+ DGLP NA+ GF ML +LL+ R + Sbjct: 73 QLEDKLVLIDGHSLMYRAFFALPPLT-TADGLPTNAVYGFLTMLLRLLEEER-----PRY 126 Query: 62 AVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+ FD FR E Y YK +RP+ P+ L Q P+V+ A GIP +E G+EADD+ Sbjct: 127 AVVAFDRGLPAFRVERYAAYKGHRPETPDDLRSQFPVVKEILAALGIPMVEHDGYEADDL 186 Query: 121 IATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175 + T A + G V +++ D+D++QLV + T + + D + ++ GI Sbjct: 187 LGTLARRAREAGVGRVLLVTGDRDVLQLVGDGIEVLLTRRGISDVHRYDAARIREEMGID 246 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P + + ++AL GD DNIPG+PGIG KTA L+Q+ G+LE++L N KK + + E Sbjct: 247 PAQYLDVKALMGDPSDNIPGVPGIGEKTALKLIQQLGDLESVLANPEAAGGKKLPQALQE 306 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 YA+ ARLSR L +RTD P+ + + L L LEF L++R+ Sbjct: 307 YADQARLSRDLARIRTDAPVDFDPQRWCRRPADAGLLRPLLLRLEFRSLLDRLG 360 >gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01] gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01] Length = 830 Score = 353 bits (906), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 199/497 (40%), Positives = 304/497 (61%), Gaps = 33/497 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R GI++ +D ML++Y+LD ++ + +A+++ + Sbjct: 360 REGIALAPGDDPMLLAYLLDPSNTAPE--GVARRY----------------------GGE 395 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 E A E + + +L+ L +L E +LL +YE ++KP+ V++ ME TG+++D LK Sbjct: 396 WTEEAGERALLSERLYAALLERLKGEERLLWLYEEVEKPLSRVLAHMEATGVRLDVAYLK 455 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQ 655 +S E+ L LEE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 456 ALSLEVEAELRRLEEEVHRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAA 515 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE + +PI+ IL++R+LSK+K TY D LP ++ +T R+HT ++ +T TGRL+S Sbjct: 516 VLEALREA-HPIVDRILQYRELSKLKGTYIDPLPALVHPKTNRLHTRFNQTATATGRLSS 574 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP++T LGQ+IRRAF++ +L+ DYSQIELR+LAH++ L +VF+ Sbjct: 575 SDPNLQNIPVRTPLGQRIRRAFVAEEGWRLVVLDYSQIELRVLAHLSGDENLIRVFQEGQ 634 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIH A+ +FGV E V MRR AKTINF ++YG+S RL+ +L IP EA +I+RY Sbjct: 635 DIHTQTASWMFGVPPEAVDSLMRRAAKTINFGVLYGMSAHRLSGELAIPYEEAVAFIERY 694 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P + +IEKT R+ GYVET+FGRR + ++ S SIR ER A N P+QG+ Sbjct: 695 FQSYPKVRAWIEKTLAEGRERGYVETLFGRRRYVPDLASRVKSIREAAERMAFNMPVQGT 754 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AAD+ + AM+ + L++ L +MLLQ+HDELV E P+E+ +Q +ME+ Sbjct: 755 AADLMKLAMVKLFPRLQE--LGARMLLQVHDELVLEAPKEQAEEVAQEAKRTMEEVW--- 809 Query: 956 INLRVPLKVNIKVSNNW 972 L+VPL+V + + +W Sbjct: 810 -PLKVPLEVEVGIGEDW 825 Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 111/301 (36%), Positives = 162/301 (53%), Gaps = 9/301 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L+ I Sbjct: 5 FEPKGRVLLVDGHHLAYRTFFALKGLTTSR-GEPVQAVYGFAKSLLKALREDGDVVI--- 60 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR++ Y YKA R PE QL L++ G+ +E+ GFEADD+ Sbjct: 61 --VVFDAKAPSFRHQTYEAYKAGRAPTPEDFPRQLALIKEMVDLLGLERLEVPGFEADDV 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 +AT AEKEG+ V I++ D+DL QL+S + + I E + +K+G+ P + V Sbjct: 119 LATLAKKAEKEGYEVRILTADRDLYQLLSERISILHP-EGYLITPEWLWEKYGLKPSQWV 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DNIPG+ GIG KTAA L++E+G+LEN+L + ++K RE IL + E Sbjct: 178 DYRALAGDPSDNIPGVKGIGEKTAAKLIREWGSLENLLKHLEQVKPASVREKILSHMEDL 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +LS +L + TD+P+ + D G L +FL+ LEF L++ AA Sbjct: 238 KLSLELSRVHTDLPLQVDFARRREPDREG--LKAFLERLEFGSLLHEFGLLESPVAAEEA 295 Query: 301 P 301 P Sbjct: 296 P 296 >gi|329737170|gb|EGG73424.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU028] Length = 876 Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 208/529 (39%), Positives = 316/529 (59%), Gaps = 21/529 (3%) Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510 +L ++ E+++ KI ++ K + HR GI++ E D+ML SY++D RS D+ S+ Sbjct: 357 HLVQWLEDKNTTKIVYDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVKSVVS 416 Query: 511 KW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + +Y + I K +K IP + I + EH + I + ++ +L Sbjct: 417 LYGQNYVKDNITIFGKGKKHHIPEEPI----LNEHIASVTEAIAAVTPTMKSQLEDYNQN 472 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 + + L+ P+ ++S+ME GI D + LK++ EI K L L NI++ +GE FN++SP Sbjct: 473 ELLKDLELPLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSP 532 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG +LF L+ P KTKTG + T LE++ G++PII +ILE+RQL+K++STY + Sbjct: 533 KQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEKLQ-GEHPIIDDILEYRQLAKLQSTYVE 590 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L I+K R+HT ++ TGRL+S++PNLQNIPI+ + G+KIR+AF PT K Sbjct: 591 GLQKVISK-DHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAF--KPTSKDS 647 Query: 745 -LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 ++SADYSQIELR+LAHI + L F N DIH A ++F V ++V MRR AK Sbjct: 648 VILSADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKA 707 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ + GYVET+ Sbjct: 708 VNFGIVYGISDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLL 767 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I S ++R+ ER A+N PIQGSAADI + AM+ + +++ K K+LLQ Sbjct: 768 HRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQ 827 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE+P+ E+ S+ + ME+A + L VPLKV+ W Sbjct: 828 VHDELIFEIPKSEVEDFSKFVEEIMEQALV----LDVPLKVDSNYGATW 872 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 107/295 (36%), Positives = 165/295 (55%), Gaps = 15/295 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS H G+ NA+ GF +L K++ KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSN-HAGIHTNAVYGFAMLLEKII----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178 + A++E F II+ D+DL QL + +Y T K+ D++H K+ G+ P++ Sbjct: 117 SRQADEEDFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPKFIAEKYNGLVPKQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ ++E + + + KK +E ++ + Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKD 235 Query: 239 TARLSRKLVMLRTDVPITIPLE--HLILEDCNGPRLISFLKALEFTKLINRVATT 291 A +S+ L + PI + LE L L+D + + I K LEF +L+ + T+ Sbjct: 236 DALMSKDLATINVHSPIEVSLEDTKLTLQD-DTTKKIELFKKLEFKQLLADIDTS 289 >gi|314933844|ref|ZP_07841209.1| DNA polymerase I [Staphylococcus caprae C87] gi|313653994|gb|EFS17751.1| DNA polymerase I [Staphylococcus caprae C87] Length = 887 Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 210/536 (39%), Positives = 319/536 (59%), Gaps = 37/536 (6%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI--- 508 L ++ E+++ +K ++ K + HR I ++ + D+ML SY++D RS D+ S+ Sbjct: 369 LVQWLEDKNTIKTVYDAKKTYVAAHRLNIDIQNVQFDVMLSSYIIDPSRSIDDVKSVVSL 428 Query: 509 -AQKWLSYTRKEILKSRKSSIPIDKISDSQVQE--HAIENSNVILQLWLLLRPKLIVEKL 565 Q ++ K +K +P +++ + V AI NS +P++ E Sbjct: 429 YGQNYVKDNVSVYGKGKKHQVPEEEVLNKHVASITEAIANS----------KPEM--EAQ 476 Query: 566 LHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 L Y + L+ P+ ++S+ME GI D + LKQ+ EI + L L +NI++ +GE Sbjct: 477 LEEYNQVELLKDLELPLAKILSEMEEIGIYTDVEDLKQMENEIQEKLDVLIKNIHEAAGE 536 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 +FN++SPKQLG +LF LK P KTKTG + T LEQ+ G++PII++ILE+RQLSK Sbjct: 537 EFNINSPKQLGVVLFETLKLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIEHILEYRQLSK 594 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 ++STY + L I+K QR+HT ++ TGRL+S++PNLQNIPI+ + G+KIR+AF Sbjct: 595 LQSTYVEGLQKVISK-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAF-- 651 Query: 740 PPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 PT K ++SADYSQIELR+LAHI + L + F N DIH A ++F V +V Sbjct: 652 KPTDKDSVILSADYSQIELRVLAHITQDESLKEAFINGNDIHTATAMKVFNVEANEVDSL 711 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 MRR AK +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ + Sbjct: 712 MRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAE 771 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GYVET+ RR + +I S ++R+ ER A+N PIQGSAADI + AM+ ++ ++D Sbjct: 772 GYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFYEKVKDTNY 831 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +LLQ+HDEL+FE+P+ E+ S+ + ME+A ++L VPLKV+ W Sbjct: 832 HATLLLQVHDELIFELPKSEVEDFSKFVEEIMEQA----LDLDVPLKVDSSYGPTW 883 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 107/301 (35%), Positives = 168/301 (55%), Gaps = 13/301 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG+S +RAFYA PLLS K G+ NAI GF +L K++ KE +HF V Sbjct: 13 DKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAIYGFAMLLEKII----KEEQPNHFLVA 67 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R K P L Q P +R A+ I E++ +EADDII T Sbjct: 68 FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKHYELENYEADDIIGTL 127 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P++ Sbjct: 128 SREADKAGFETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPSFIAEKYDGLQPKQ 186 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL+++ ++E + + + KK +E ++ + Sbjct: 187 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLKQFTSVEGVYEHIDDVTAKKLKEKLVNSKD 246 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDC-NGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S+ L + + PI + L LE+ + I K LEF +L+ + + D Sbjct: 247 DALMSKDLATINVESPIEVTLNDTKLENQDDNTNKIELFKKLEFKQLLADIDEEANNDVV 306 Query: 298 N 298 N Sbjct: 307 N 307 >gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969] gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969] Length = 866 Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 211/573 (36%), Positives = 337/573 (58%), Gaps = 30/573 (5%) Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463 ++ + I + L+++ ++ +++ IFI+ + + +E + K+FFENE L Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELVKEEENIKSFKEFFENEDIL 375 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K G++IK L + GI G D L +Y++DS + + + S+ +LS Sbjct: 376 KNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-------- 427 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K + + E + + + +L L+L+ K+ EK+ + ++ P+ V+S Sbjct: 428 ---------KFPNVKDGEEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME G ++++D+L ++S + + L ++ I++L+ E+FN++SPKQLG ILF KL P Sbjct: 479 MESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T A+ LE++ +PII+ I +RQLSKI STY + L + I+ +H+ Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGS-IHST 595 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILA 759 ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI P K+ LISADYSQIELR+LA Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFI--PKKEGDLLISADYSQIELRVLA 653 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 HI+ + F + DIH A+E+F V +E+V+P MR AK +NF I+YGI F L+ Sbjct: 654 HISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ 713 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA +Y+ YF R+P I EYI K + + GYV T+ RR + E N+ + Sbjct: 714 DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIV 773 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 + + ER A+NAPIQG+AADI + AM++V+ L++ L +K++LQ+HDEL+ V + E+ Sbjct: 774 KALGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ ME I L VPL V++ V +W Sbjct: 834 VKKLLKEEMENT----IKLSVPLDVDVNVGEDW 862 Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG+S + RAFYA PLLS +G NAI GF NML+K+ R++ + F Sbjct: 3 RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR+ Y DYKA R K+P L Q P+V+ + F I E+ GFEADDII + Sbjct: 58 DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 +AE EG V I++ DKD +QL + + T K E + + +++++G+ P + + Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GD DNIPG+PG+G KTA L++EYG++E +L N I KK +EN+ EY+E A Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237 Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289 S+KL + T+VPI L+ + +D N +L + L+ ++++++ Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286 >gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] Length = 891 Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 209/533 (39%), Positives = 319/533 (59%), Gaps = 15/533 (2%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIAS 507 +LS LK EN GHN KYD VL + IS+ D +L SY+L+S + H + Sbjct: 366 VLSQLKPLLENPSIGFYGHNFKYDYHVLRNHNISVANISFDTILASYLLNSHKRQHSLDH 425 Query: 508 IAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 +A + + +E++ K+ + + ++ ++ + E+ + ++L +L +L K Sbjct: 426 LALELFDKVKIAIQELIGKGKNQLNMKNVALDKICHYCCEDVDYTIRLKNILLSQLEERK 485 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L + L+ P++ V++QME GI ID LK +S I + + LE+NIY L+GE FNL+ Sbjct: 486 LTSLLFDLELPLLSVLAQMERNGIFIDTAYLKHLSQFIGQEIHCLEQNIYALAGEIFNLN 545 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQL ILF KL K TG T A+ LE + PI + +LE+R L K++STY Sbjct: 546 SPKQLSQILFHKLGIKPPKKIATGH-STNAEVLEILK-HVYPIAEKLLEYRTLEKLRSTY 603 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 +SLP +N +T R+H ++ + TGRL+ +PNLQNIP++T++G++IR AF P K+ Sbjct: 604 VNSLPLQVNAKTGRIHCNFNQSMAATGRLSCQDPNLQNIPVRTEVGRQIREAF--RPEKE 661 Query: 745 ---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 +SADYSQIELR+LAH+++ L + F ++ DIH+ A+ IF V +++VS + R A Sbjct: 662 DWSYLSADYSQIELRLLAHLSEDPVLIKAFLSNEDIHKYTASLIFDVPLQQVSSEQRYQA 721 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +NF +IYG F LA +L I AA +I+RYF R+ + E++E K R+ G T Sbjct: 722 KAVNFGLIYGQQAFGLAHELGIDTKTAAAFIQRYFERYGKVKEFLEACKQSARETGKAVT 781 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 ++GR EI S + IR +R A+N PIQG+ AD+ + AM+ ++K L K M+ Sbjct: 782 MYGRERLLPEIRSQNAMIRATADRFAVNTPIQGTQADLIKMAMLKINKLLIQEKKKGFMI 841 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LQIHDEL+FEVP +E+ + S ++ ++ME INL+VPL VNI + NW+E Sbjct: 842 LQIHDELIFEVPNQELESISHLVKNTMENI----INLKVPLIVNIHIGKNWKE 890 Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 154/284 (54%), Gaps = 7/284 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+++D S +IYR+++A ++ G NA+ GF + KL+ K+ +H +FD Sbjct: 4 LYILDASGYIYRSYFAIRQMTNAR-GESTNALFGFIRSVLKLI----KDFNPTHLVAVFD 58 Query: 67 YPAVT-FRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P + R E+YP YKA+R ++P+ LL Q+ + Q GIP + + G EADD + + Sbjct: 59 GPNNSQKRTELYPAYKAHRKEMPKDLLYQILWSQRFCQLMGIPELMVPGVEADDTMGSIA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184 A I ++DKD+ QLVS + +T K+ I D V +++G+ P +M+ A Sbjct: 119 KWAATLNTTAYICTSDKDMCQLVSNQILILNTFKDNLIIDANGVKEQFGVMPAQMIDYLA 178 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 + GD+ DNIPG+ G G KTAA LL+++G+L+ IL + + KK+++ ++ E LS+ Sbjct: 179 IIGDASDNIPGLTGFGPKTAADLLEKFGSLDYILEHPLEVSGKKKQDTLISEKEKVLLSK 238 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 KLV++ T V + L L F + F+ LI + Sbjct: 239 KLVIVDTTVSFPNQEDFFKLTSPAYQSLKEFYAEMNFSSLIREL 282 >gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis] Length = 833 Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 195/498 (39%), Positives = 303/498 (60%), Gaps = 33/498 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+++ +D +L++Y+LD ++ + +A+++ + Sbjct: 364 REGVALDPTDDPLLVAYLLDPANTNPE--GVARRY----------------------GGE 399 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A E + + +L+ L P+L EKLL +Y+ +++P+ V++ ME G+++D LL+ Sbjct: 400 FTEDAAERALLSERLFQNLFPRL-SEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQD 656 +S E+ K + LE ++ L+G FNL+S QL +LF +L P G KTG+ ++TAQ Sbjct: 459 LSFELEKEMERLEGEVFRLAGHPFNLNSRDQLERVLFDELGLTPVGRTEKTGK-RSTAQG 517 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + G +PI++ IL++R+LSK+KSTY D LP ++ RT R+HT ++ +T TGRL+S Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSS 577 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IR+AF++ L++ADYSQIELR+LAH++ L +VF D Sbjct: 578 DPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKD 637 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH AA +FG++ V P+MRR AKT+NF ++YG+S RL+ +L I EA +I+RYF Sbjct: 638 IHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLYGMSAHRLSQELGIDYKEAEAFIERYF 697 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IE+T R GYVET+FGRR + ++ S S+R ER A N P+QG+A Sbjct: 698 QSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTA 757 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + L+ L +LLQ+HDELV EVPE+ A ++ ME Sbjct: 758 ADLMKIAMVKLFPRLK--PLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENTY---- 811 Query: 957 NLRVPLKVNIKVSNNWQE 974 L VPL+V + V +W E Sbjct: 812 PLDVPLEVEVGVGRDWLE 829 Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 109/284 (38%), Positives = 155/284 (54%), Gaps = 12/284 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + LVDG YR FYA L + + G PV + GF L K L+ + + V+ Sbjct: 12 KRVLLVDGHHLAYRTFYALSLTTSR--GEPVQMVYGFARSLLKALKEDGQAVV-----VV 64 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD A +FR+E Y YKA R PE QL LV+ G+ +E G+EADD++ T Sbjct: 65 FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTL 124 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 AE+EG V I++ D+D QL+S + L D D++ +K+G+PPE+ V Sbjct: 125 AKKAEREGMEVRILTGDRDFFQLLSEKVSVLLPDGTLVTPKDVQ---EKYGVPPERWVDF 181 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +ALTGD DNIPG+ GIG KTA LL E+G++EN+L N R+K R I + E RL Sbjct: 182 RALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSVRRKIEAHLEDLRL 241 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 S L +RTD+P+ + + L + L +FL+ LEF L++ Sbjct: 242 SLDLARIRTDLPLEVDFKALRRRTPDLEGLRAFLEELEFGSLLH 285 >gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC 27755] gi|166028202|gb|EDR46959.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC 27755] Length = 875 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 178/420 (42%), Positives = 273/420 (65%), Gaps = 7/420 (1%) Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614 LL KL ++LH++E ++ P++ + ME GI+ + + LK S+++ + LE+ IY Sbjct: 461 LLYKKLEETQMLHLFEDIEMPLVFTLYDMERNGIRAEGEALKVYSSQLGGRISELEKEIY 520 Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674 +++GE FN++SPKQLG ILF KL P KTK+G + T A L+++ D PI+ +LE+ Sbjct: 521 EMAGESFNINSPKQLGVILFEKLLLPGSKKTKSG-YSTAASVLDKL-APDYPIVSKVLEY 578 Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734 RQL+K+KSTYAD L N+I + R+H+ ++ T TGR++S EPNLQNIP++ +LG+ IR Sbjct: 579 RQLTKLKSTYADGLVNYI-EEDGRIHSKFNQTITATGRISSTEPNLQNIPVRVELGRLIR 637 Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794 + F+ + ADYSQIELR+LAH + L + + DIHR+ A+++F + E+V+ Sbjct: 638 KVFVPEDGYIFVDADYSQIELRVLAHCSGDANLIEAYREEKDIHRITASQVFHIPFEEVT 697 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 P RR+AK +NF I+YGIS F L+ L I R EAA YI+ YF +PGI +++ T + Sbjct: 698 PLQRRNAKAVNFGIVYGISSFGLSEDLSIGRKEAAKYIEDYFKTYPGIKTFLDDTVAHAK 757 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 + GYV T+FGRR E++S R+ ER A+NAPIQG+AADI + AMI V++ L++ Sbjct: 758 EMGYVVTLFGRRRPVPELSSSNFMQRSFGERVAMNAPIQGTAADIMKIAMIGVNRRLKEQ 817 Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L ++++LQ+HDEL+ E E+ +I+ ME+A +L VPL++++ NW E Sbjct: 818 NLKSRLVLQVHDELLIEAYRPELPEVEKILREEMEQAA----SLDVPLEIDMHTGENWYE 873 Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 90/291 (30%), Positives = 157/291 (53%), Gaps = 11/291 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAF+ P L+ +GL NAI GF +++K+L + + + V FD Sbjct: 9 IVLIDGHSILNRAFFGLPDLTNS-EGLHTNAIYGFLTIMFKILDEEKPD----YLTVAFD 63 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+++Y YK R + + L Q+P+++ + GI IE G EADD++ T + Sbjct: 64 VHAPTFRHKMYDAYKGTRKPMADELRQQVPVIKEVLCSMGIKTIECAGLEADDLLGTLSR 123 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIE-----HVIKKWGIPPEKMV 180 E+EG V++IS D+DL+QL + + K+ + ++E V +++ + P++ + Sbjct: 124 RCEEEGMEVSVISGDRDLLQLATQHVKIRIPKTKQGRTEVEDYYAADVKERYQVTPKEFI 183 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+AL GD+ DNIPG+P IG KTA ++ EY ++EN + S +K + + + E+ A Sbjct: 184 DLKALMGDTADNIPGVPSIGEKTATKIITEYHSIENAYEHVSELKPPRASKALAEHWNMA 243 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 +S+ L + L L + +F + L+F L+++ T Sbjct: 244 VMSKTLATIEVHADFPYELSEAKLGNIFTEEAYAFFQKLQFKNLLSKFDVT 294 >gi|320106496|ref|YP_004182086.1| DNA polymerase I [Terriglobus saanensis SP1PR4] gi|319925017|gb|ADV82092.1| DNA polymerase I [Terriglobus saanensis SP1PR4] Length = 934 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 196/517 (37%), Positives = 301/517 (58%), Gaps = 28/517 (5%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTR 517 K H++K +LH G RG E D+ML SY+++ SH +A +A + Sbjct: 438 KTTHDLKS---LLHTAG--QRGLEIANVAHDVMLYSYLINPTHGSHKLADVAARM----- 487 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 +S P+ K + + E ++ I +L LR + +LL YE +D P++ Sbjct: 488 ------GQSITPLVK-NQTPPATALPEAASAIHRLAPALRIQAEEGELLKPYEEIDLPLV 540 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 V+ +ME G +ID +L+ +S++++ ++ +L E IY +SG +FN++SPKQLGD+LF K+ Sbjct: 541 PVLLRMEQVGCRIDSQVLRDMSSKLAVDMDALAERIYAMSGHRFNINSPKQLGDVLFNKM 600 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 P K G+ +TAQD+ + + +LE+RQL+K++S Y + LP + R Sbjct: 601 DLPKPMKYGKGKVVSTAQDVLEELAAHHEAPALVLEYRQLAKLRSNYTEQLP-QLADREG 659 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 RVHT ++ T TGRL+S PNLQNIP +T LG++IR AFI L+SADYSQIELR+ Sbjct: 660 RVHTTFNQVGTATGRLSSTNPNLQNIPTRTALGREIRAAFIPAEGNVLLSADYSQIELRL 719 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 +AH ++ L + DIH + AAE+F V+ E + + R AK +NF I+YGISPF L Sbjct: 720 MAHFSQDPLLLDAYRTGKDIHTITAAEVFEVDPETMDKETRNRAKAVNFGIVYGISPFGL 779 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 A QL IP+ EA YI+RY R+ G+ +IE+T + R G V T+FGR +I S Sbjct: 780 AAQLGIPQGEAKLYIERYRERYAGVTAFIERTISDTRSTGKVSTLFGRTRPIPDIGSRNP 839 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 + R ER A+N P+QG+AAD+ + AM+ + +L + KLAT+M LQ+HDEL+F+ P E Sbjct: 840 NQRGFAERTAVNTPLQGTAADMIKIAMLKIDAALTERKLATRMTLQVHDELLFDAPVGET 899 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++ ME ++L +P+ + NW++ Sbjct: 900 EEVAALVKLEMEGV----VSLSIPIVAEVGKGPNWRD 932 Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/319 (33%), Positives = 173/319 (54%), Gaps = 32/319 (10%) Query: 7 LFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 ++L+D +F++RA++A P+ +R G+P A F NM+ KL R++ + A Sbjct: 9 VYLLDTMAFVFRAYHAMQRSRPMSTRT--GIPTAATYVFVNMINKL----RRDFAPHYLA 62 Query: 63 VIFDYPAVTFRNEI---------------------YPDYKANRPKIPEMLLPQLPLVRLA 101 I++ A RNE+ Y YKANR + P L Q P +R A Sbjct: 63 AIYEGGAPVHRNELAAEMKTMRKFNIKTQQFDEVDYLGYKANRSETPPDLEQQQPYIRRA 122 Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161 +AF IP + +G+EADD+I T + ++G V ++S+DKD+MQLV+ + + +K+ Sbjct: 123 LEAFRIPILSYEGYEADDVIGTLSCRLAEQGHHVYVVSSDKDMMQLVNENVSILNPMKDN 182 Query: 162 KI-DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220 I D V + G+PP ++V + AL GDSIDNIPG PGIG K + L+Q +G++EN L Sbjct: 183 LILDPAKVEEVLGVPPRQVVDVMALRGDSIDNIPGAPGIGDKGSVELIQAFGSVENALDK 242 Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280 A+ +K+K +RE++ E LS++L + ++P+ LE + + L + LE Sbjct: 243 AADVKKKTQRESLQNNREMVLLSKELATIHCNLPMEFSLEDMTTTEPEPVLLRALFSELE 302 Query: 281 FTKLINRVATTYDCDAANI 299 FT L+ +A + AN+ Sbjct: 303 FTTLLKELAPPATAEKANL 321 >gi|262281777|ref|ZP_06059546.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA] gi|262262231|gb|EEY80928.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA] Length = 880 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 210/517 (40%), Positives = 309/517 (59%), Gaps = 21/517 (4%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRTKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ EH V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----EQEQLFEHLARKVQVLLETEEPMKDQLRSHDQLDLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF--TKLKF 639 +MEI GI+++++ L+ + E K L SL + IYDL+G++FN++SPKQLG ILF L Sbjct: 489 KMEIAGIKVERETLQGMQVENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLSL 548 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 KTKTG +TA D+ + PI+ ILE+RQ+SK++STY L I ++ Sbjct: 549 EYTKKTKTGY--STAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKI 605 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRIL 758 HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+L Sbjct: 606 HTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVL 665 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRL 817 AHI++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F L Sbjct: 666 AHISQDEHLIAAFQHGEDIHTATAMRVFGIEKTEDVTPNDRRNAKAVNFGVVYGISDFGL 725 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 A L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS Sbjct: 726 ANNLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNF 785 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 +IRN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+ Sbjct: 786 NIRNFAERTAINSPIQGSAADILKVAMINLDRALTEENFKSRMLLQVHDEIVLEVPNDEL 845 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 T Q++ +ME A I L VPL + W E Sbjct: 846 TAVRQLVKETMEAA----IELAVPLVADENAGQTWYE 878 Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 165/302 (54%), Gaps = 19/302 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLSHLGIHYYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVETLSKFYDEMGFKQLKAQL 293 Query: 289 AT 290 T Sbjct: 294 GT 295 >gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987] gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987] Length = 866 Score = 352 bits (904), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 211/573 (36%), Positives = 337/573 (58%), Gaps = 30/573 (5%) Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463 ++ + I + L+++ ++ +++ IFI+ + + +E + K+FFENE L Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELVKEEENIKAFKEFFENEDTL 375 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K G++IK L + GI G D L +Y++DS + + + S+ +LS Sbjct: 376 KNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-------- 427 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K + + E + + + +L L+L+ K+ EK+ + ++ P+ V+S Sbjct: 428 ---------KFPNVKEGEEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME G ++++D+L ++S + + L ++ I++L+ E+FN++SPKQLG ILF KL P Sbjct: 479 MESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T A+ LE++ +PII+ I +RQLSKI STY + L + I+ +H+ Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGS-IHST 595 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILA 759 ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI P K+ LISADYSQIELR+LA Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFI--PKKEGDLLISADYSQIELRVLA 653 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 HI+ + F + DIH A+E+F V +E+V+P MR AK +NF I+YGI F L+ Sbjct: 654 HISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ 713 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA +Y+ YF R+P I EYI K + + GYV T+ RR + E N+ + Sbjct: 714 DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIV 773 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 + + ER A+NAPIQG+AADI + AM++V+ L++ L +K++LQ+HDEL+ V + E+ Sbjct: 774 KALGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ ME I L VPL V++ V +W Sbjct: 834 VKKLLKEEMENT----IKLSVPLDVDVNVGEDW 862 Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG+S + RAFYA PLLS +G NAI GF NML+K+ R++ + F Sbjct: 3 RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR+ Y DYKA R K+P L Q P+V+ + F I E+ GFEADDII + Sbjct: 58 DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 +AE EG V I++ DKD +QL + + T K E + + +++++G+ P + + Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GD DNIPG+PG+G KTA L++EYG++E +L N I KK +EN+ EY+E A Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237 Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289 S+KL + T+VPI L+ + +D N +L + L+ ++++++ Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286 >gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88] gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88] Length = 882 Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 197/522 (37%), Positives = 318/522 (60%), Gaps = 27/522 (5%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQK 511 LK FE E + H++K + L + + + D+ + +Y++DS +S +D++++ Q+ Sbjct: 382 LKTIFEKEAVRVVSHDVKVLSMALKKLDVEFTKALFDLKIAAYLIDSSKSDYDLSTLIQE 441 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 LS +I+K +E I ++++ +L L+ ++I ++ +Y Sbjct: 442 CLS----KIVKDD--------------EEREIRETSLLEKLCANLKEQIINLEMEKLYYE 483 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ V++ ME+ G ++D ++L+ + ++ + + +++ IY+L+ E+FN++SPKQLG Sbjct: 484 VELPLAFVLANMELEGFKVDGEMLENIGKKLQREIEKVQKEIYELADEEFNVNSPKQLGK 543 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF KL P KTKTG + T AQ LE + +PII I +RQL+K+ STY + L N Sbjct: 544 ILFEKLDLPVIKKTKTG-YSTNAQVLEVLE-DKHPIISKIGYYRQLTKLYSTYVEGLKNV 601 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADY 750 I++ R+H+ ++ T TGRL+S EPNLQNIPIK ++G+++R+ F+ +I SADY Sbjct: 602 IDE-DGRIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGREVRKVFVPNYENSIILSADY 660 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELR+LAHIA L F++ DIH A+E+F V I++V+ MR +AK +NF I+Y Sbjct: 661 SQIELRVLAHIADDENLINAFKHHADIHTKTASEVFKVPIDEVTVNMRGNAKAVNFGIVY 720 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 GI F LA L+I R EA YI YF R+P + +Y+++T + +++ YV TI RR Sbjct: 721 GIGDFSLAKDLKISRKEAKGYIDTYFERYPNVKKYMDETIDKAKRDMYVTTILNRRRFIP 780 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 EI + ++ + ER A+N PIQGSAADI + AM+ V L++ L +K++LQ+HDEL+ Sbjct: 781 EIGNKNKIVKALGERLAMNTPIQGSAADIIKMAMVKVFNVLKERDLKSKIILQVHDELIL 840 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 V ++E+ I+ SME LP L VPL+V+I NW Sbjct: 841 NVYKDELEEIKSIVKDSMEN-VLP---LSVPLEVDINEGENW 878 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 121/296 (40%), Positives = 177/296 (59%), Gaps = 16/296 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M K + L ++DG+S + RAFYA P L+ H+G+ NA+ GF NML K+ K+ I Sbjct: 7 MPKRDKLVILDGNSLMNRAFYALPPLTN-HEGVHTNAVYGFTNMLLKI-----KDDIKPD 60 Query: 61 FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + V FD A TFR++ Y DYKA R K+PE L Q P+V+ I EI+GFEADD Sbjct: 61 YIVCTFDKSAPTFRHQAYKDYKAGRKKMPEELREQFPIVKGLLSKLAIEIFEIEGFEADD 120 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIP 175 +I T + AE++ V I++ DKD +QL S TT + T + E D + V+ + G+ Sbjct: 121 LIGTLSKFAEEKDIEVYIVTGDKDALQLASDTTKILFTKRGITEREIYDRQKVVDEMGVT 180 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P + + ++ L GD DNIPG+PGIG KTA L++EY ++EN+L N + KK +EN++E Sbjct: 181 PTEFIDVKGLMGDPSDNIPGVPGIGEKTALKLIKEYSSVENVLNNIENLSGKKLKENLIE 240 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINRV 288 +E A S+KL + +VPI I LE + + D R I F+K L+F LI+++ Sbjct: 241 NSEQAIFSKKLATIMRNVPIDIDLEKIKSKEEYDIEAVREI-FIK-LQFKSLIDKI 294 >gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495] gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495] Length = 866 Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 211/573 (36%), Positives = 336/573 (58%), Gaps = 30/573 (5%) Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463 ++ + I + L+++ ++ +++ IFI+ + + +E + K+FFENE L Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELVKEEENIKSFKEFFENEAIL 375 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K G++IK L + GI G D L +Y++DS + + + S+ +LS Sbjct: 376 KNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-------- 427 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K + + E + + + +L L+L+ K+ EK+ + ++ P+ V+S Sbjct: 428 ---------KFPNVKEGEEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME G ++++D+L ++S + + L ++ I++L+ E+FN++SPKQLG ILF KL P Sbjct: 479 MESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T A+ LE++ +PII+ I +RQLSKI STY + L I+ +H+ Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKAVIDTDGS-IHST 595 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILA 759 ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI P K+ LISADYSQIELR+LA Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFI--PKKEGDLLISADYSQIELRVLA 653 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 HI+ + F + DIH A+E+F V +E+V+P MR AK +NF I+YGI F L+ Sbjct: 654 HISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ 713 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA +Y+ YF R+P I EYI K + + GYV T+ RR + E N+ + Sbjct: 714 DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIV 773 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 + + ER A+NAPIQG+AADI + AM++V+ L++ L +K++LQ+HDEL+ V + E+ Sbjct: 774 KALGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ ME I L VPL V++ V +W Sbjct: 834 VKKLLKEEMENT----IKLSVPLDVDVNVGEDW 862 Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG+S + RAFYA PLLS +G NAI GF NML+K+ R++ + F Sbjct: 3 RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR+ Y DYKA R K+P L Q P+V+ + F I E+ GFEADDII + Sbjct: 58 DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 +AE EG V I++ DKD +QL + + T K E + + +++++G+ P + + Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GD DNIPG+PG+G KTA L++EYG++E +L N I KK +EN+ EY+E A Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237 Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289 S+KL + T+VPI L+ + +D N +L + L+ ++++++ Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286 >gi|332364041|gb|EGJ41819.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1059] Length = 880 Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 206/514 (40%), Positives = 303/514 (58%), Gaps = 15/514 (2%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH--DIASIAQKWLSYTRKEIL-K 522 +++K K++L YGI + D L Y+L + + IA + + + T E+ K Sbjct: 374 YDLKRTKVLLSHYGIELPAAAFDARLAKYLLSTVEDNELVTIARLYGQTILPTDDEVYGK 433 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K ++P Q+ +H V+L+ ++ +L L + +++P+ V+++ Sbjct: 434 GAKRALP----EQEQLFKHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAK 489 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 MEI GI+++++ L+ + AE K L SL + IYDL+G++FN++SPKQLG ILF + P Sbjct: 490 MEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLE 549 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 550 YTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHTR 608 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHI 761 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAHI Sbjct: 609 YVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHI 668 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +K L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 669 SKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANN 728 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I R A DYI+ YF RFPGI Y E R GYVETI+ RR +INS +IR Sbjct: 729 LGISRKAAKDYIETYFERFPGIKNYKETIVREARDKGYVETIYHRRRSLPDINSRNFNIR 788 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 N ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 789 NFAERTAINSPIQGSAADILKVAMINLDRALTEKNFNSRMLLQVHDEIVLEVPNDELTAV 848 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q++ +ME A I L VPL + W E Sbjct: 849 RQLVKETMEAA----IELAVPLVADENAGQTWYE 878 Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 119/303 (39%), Positives = 167/303 (55%), Gaps = 19/303 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R Q GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLQHLGIHFYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTRAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293 Query: 289 ATT 291 T+ Sbjct: 294 GTS 296 >gi|125716978|ref|YP_001034111.1| DNA polymerase I [Streptococcus sanguinis SK36] gi|125496895|gb|ABN43561.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains, putative [Streptococcus sanguinis SK36] Length = 880 Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 205/514 (39%), Positives = 304/514 (59%), Gaps = 15/514 (2%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH--DIASIAQKWLSYTRKEIL-K 522 ++IK K++L YGI + D L Y+L + + IA + + + T E+ K Sbjct: 374 YDIKRAKVLLSHYGIELPAAAFDARLAKYLLSTVEDNELVTIARLYGQTILPTDDEVYGK 433 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K ++P Q+ +H V+L+ ++ +L L + +++P+ V+++ Sbjct: 434 GAKRALP----EQEQLFKHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAK 489 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 MEI GI+++++ L+ + AE K L SL + IYDL+G++FN++SPKQLG ILF + P Sbjct: 490 MEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPLE 549 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KT +TA D+ + PI+ ILE+RQ+SK++STY L I ++HT Sbjct: 550 YTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHTR 608 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHI 761 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAHI Sbjct: 609 YVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAHI 668 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 669 SQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLANN 728 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +IR Sbjct: 729 LGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNIR 788 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 N ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 789 NFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAV 848 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A I L VPL + W E Sbjct: 849 RKLVKETMETA----IELAVPLVADENAGQTWYE 878 Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 119/305 (39%), Positives = 167/305 (54%), Gaps = 19/305 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R + GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHYYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKAQL 293 Query: 289 ATTYD 293 T D Sbjct: 294 GTGQD 298 >gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [uncultured Planctomycetales bacterium HF0500_02G17] Length = 987 Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 210/566 (37%), Positives = 316/566 (55%), Gaps = 50/566 (8%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-----------EDIMLMSYVLD 497 +L L+ E+ K+GHN+KYD LVL R G+ +RG D M+ SY++D Sbjct: 426 VLGALRPVLEDATKPKLGHNLKYDILVLRRAGVELRGHVSTVGAGDWPGGDSMIASYLVD 485 Query: 498 SGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWL 554 + RSSH + ++A L E++ + K D + + +A E+++V LQL Sbjct: 486 ASRSSHSMDALAMALLERRNIPISELIGTGKKQKTFDTVPLDRATPYAAEDADVTLQLCQ 545 Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614 L P+L +L ++ L+ P++DV++++E GI++D D L + I + L I Sbjct: 546 RLLPELQEMELGALFGGLEMPLVDVLAELEWNGIRVDPDELDRQRGRIEGRVKDLRNQIA 605 Query: 615 DLS----GEKFNLSSPKQLGDILFTKLKFPSGA----------KTKTGQWKTTAQDLEQI 660 D + G +F+ SPKQL +LF K P A + KTG T A+ LE++ Sbjct: 606 DEAMGAVGREFDADSPKQLAGVLFNK---PDAADPGLGLRVIKRGKTGP-STDAEVLEKL 661 Query: 661 N---CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 + PI ILE+RQL+K+ +TY +L I+ RT+R+H ++ TGRL+S + Sbjct: 662 SQDASVKTPIPDLILEYRQLTKLVNTYLVNLVEEIDPRTKRIHASFNQTVAATGRLSSSD 721 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 PNLQNIPI+T+LG++IR+AF++ P L++ADYSQIELR+LAH+++ L + F DI Sbjct: 722 PNLQNIPIRTELGREIRKAFVAEPGHLLVAADYSQIELRLLAHLSRDPALIEAFREGQDI 781 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H VAA+I V + +VS + R AK +NF I+YG++ F LA +L + SEA + I Y Sbjct: 782 HAAVAAQIHDVPLAEVSREQRNGAKMVNFGIVYGVTAFGLARRLGVSNSEAGEIIDGYKR 841 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 RF GI ++E+ GYVET+ RR +I+S + R + ER AIN+ +QGSAA Sbjct: 842 RFAGITTFLEECIAQAHAQGYVETMMKRRRPIPDIDSRDQNRRALAERMAINSVVQGSAA 901 Query: 898 DITRRAMISVHKSLEDHKLA-----------TKMLLQIHDELVFEVPEEEITTASQIIVH 946 D+ + AM+ +H+ L A +MLLQIHDELVFE P++ +IV Sbjct: 902 DLIKIAMVDLHRRLSPRAAAWREGAGPEIEGVRMLLQIHDELVFEAPKDRAEAVRDLIVA 961 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972 ME A + L VPL + VS +W Sbjct: 962 RMEAA----MALDVPLVADASVSGDW 983 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/273 (39%), Positives = 158/273 (57%), Gaps = 20/273 (7%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKHDGLPVNAIAGFCNMLWKLLQN-SRKESIASHFAV 63 L+L+DG + +RA++A TP+ S P N GF M+ KLL+ + + AV Sbjct: 4 LYLIDGFAQFFRAYHAIRTPMTSPVTK-EPTNMTFGFVGMMLKLLRGEGQMGGPPDYVAV 62 Query: 64 IFDYPA--VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 + D TFR+++YP+YKA R PE L+PQ+ +A G+P + +GFEADD+I Sbjct: 63 VIDVSGDRGTFRSQLYPEYKATRDAPPEDLMPQVERALAMLRAAGVPVLGAEGFEADDVI 122 Query: 122 ATY--TYIAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDIEHVIKKWGIPP 176 AT T+ V I+S DKDL QL+ P T +YD +E I E + ++GI P Sbjct: 123 ATIASTFSERHPDVRVRIVSKDKDLKQLLGEGVPPTEMYDVHTDEVITAETLRAEFGITP 182 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-------KR 229 +++ + AL GD++DN+PG+PG+G KTAA L+ E+G++E ++ K K KR Sbjct: 183 AQVIDMLALMGDTVDNVPGVPGVGPKTAAQLVAEFGSVEAVVAEVREEKAKKDWKIKGKR 242 Query: 230 RENILEYAETA--RLSRKLVMLRTDVPITIPLE 260 RENIL AE LSR+LV LR DVP+ + LE Sbjct: 243 RENILAAAEAGVLELSRELVALRHDVPVEMDLE 275 >gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239] gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239] Length = 866 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 205/524 (39%), Positives = 314/524 (59%), Gaps = 30/524 (5%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K+FFENE LK G++IK L + GI G D L +Y++DS + + + S+ Sbjct: 365 FKEFFENEDILKNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINN 424 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 +LS K + + E + + + +L L+L+ K+ EK+ + Sbjct: 425 YLS-----------------KFPNVKEGEEDLVGISFMKELTLVLKKKIEEEKMERLMYD 467 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ V+S ME G ++++D+L ++S + + L ++ I++L+ E+FN++SPKQLG Sbjct: 468 IELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGK 527 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF KL P KTKTG + T A+ LE++ +PII+ I +RQLSKI STY + L + Sbjct: 528 ILFEKLDLPVIKKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKSV 585 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISA 748 I+ +H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI P K+ LISA Sbjct: 586 IDTDGS-IHSTFNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFI--PKKEGDLLISA 642 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELR+LAHI+ + F + DIH A+E+F V +E+V+P MR AK +NF I Sbjct: 643 DYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGI 702 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGI F L+ L I R EA +Y+ YF R+P I EYI K + + GYV T+ RR + Sbjct: 703 VYGIGDFSLSQDLNISRREAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRY 762 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 E N+ ++ + ER A+NAPIQG+AADI + AM++V+ L++ L +K++LQ+HDEL Sbjct: 763 IPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDEL 822 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + V + E+ +++ ME I L VPL V++ V +W Sbjct: 823 IINVVKGELDIVKKLLKEEMENT----IKLSVPLDVDVNVGEDW 862 Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG+S + RAFYA PLLS +G NAI GF NML+K+ R++ + F Sbjct: 3 RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR+ Y DYKA R K+P L Q P+V+ + F I E+ GFEADDII + Sbjct: 58 DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 +AE EG V I++ DKD +QL + + T K E + + +++++G+ P + + Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GD DNIPG+PG+G KTA L++EYG++E +L N I KK +EN+ EY+E A Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237 Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289 S+KL + T+VPI L+ + +D N +L + L+ ++++++ Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286 >gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427] gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427] Length = 882 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 194/531 (36%), Positives = 319/531 (60%), Gaps = 13/531 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 E + L +F E+ + KI H+ K K L + G+ + G D + +Y+L S+D+A Sbjct: 355 EAKAVLIEFLESATYQKIVHDSKNFKHELLKVGLGLNGVCFDTFIAAYLLHPTNKSYDLA 414 Query: 507 SIAQKWLS----YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 + + +++ + +L KS ++ D + + + S + L + ++ L Sbjct: 415 ELEELFINKQSLMNLENLLGKGKSQKTWLQLEDEERINNLGKRSQLALSVTEAMKEALQE 474 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 + + ++ ++ P+IDV+ ME+ GI++D + L+ E+ L +L +IY+ +GE FN Sbjct: 475 QNMTRLFYDIEMPLIDVLFDMEVEGIKVDPEGLRSYGEELQGLLDTLTTSIYEAAGESFN 534 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 ++SPKQLG ILF KL P KTKTG + T A+ LE + D PI+ ILE+RQ +K+KS Sbjct: 535 INSPKQLGVILFEKLGIPCAKKTKTG-YSTAAEVLEALK-NDYPIVAQILEYRQYAKLKS 592 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPP 741 TY D L N + ++ ++H+ ++ T TGRL+S EPNLQNIP+K ++G+KIR+ F+ S Sbjct: 593 TYVDGLLNVLTEQN-KIHSTFNQTITATGRLSSTEPNLQNIPVKFEMGKKIRQLFVPSSE 651 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 + DYSQIELR+LAH++ L + F+ ++DIH + A+++F V E V+ R +A Sbjct: 652 NHIFLDGDYSQIELRVLAHMSGDPTLIKAFKENIDIHALTASQVFHVPFEDVTSMQRSNA 711 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +NF I+YGIS F L+ L+I + EA YI YF ++P I Y+++ +F QNGYVET Sbjct: 712 KAVNFGIVYGISAFALSEDLKISQKEAQKYIDGYFEKYPCIKAYLDEIIDFAMQNGYVET 771 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 ++ R+ EI + ++R +R A+N PIQG++ADI + AMI VH+ L++H L +K++ Sbjct: 772 LYHRKREIPEILASNYNMREFGKRVAMNTPIQGTSADIIKIAMIRVHQKLKEHSLKSKLI 831 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 L +HDEL+ + ++E+ +++ ME A +L VPL V++ NW Sbjct: 832 LTVHDELLIDAHKDEVEIVKKLLKEEMEHAA----DLSVPLVVDVHQGANW 878 Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 107/289 (37%), Positives = 158/289 (54%), Gaps = 13/289 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L DG S RAFY PLL+ K G NAI GF NM+ +++ + + + + FD Sbjct: 5 LLLFDGHSIANRAFYGVPLLTNK-SGQYTNAIYGFLNMMLSIMEKEKPD----YLGITFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E DYK NR +PE L Q+PL++ +A I IE +GFEADD++ T Sbjct: 60 LSVPTFRHEFSADYKGNRKGMPEELRVQIPLLKKVLKAMHIHIIEKEGFEADDVLGTLAK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 EK G VT++S D+DL Q+ S P T T + E + V++ +G+ P Sbjct: 120 AGEKAGMQVTVVSGDRDLFQITSDMIEIKIPRTKKTGT-EIESFFAKDVVETYGVSPIAF 178 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 V ++ L GD+ DNI G+PGIG KTA L++EYG++EN+L +I QKK +EN++ YA+ Sbjct: 179 VDVKGLMGDASDNIKGVPGIGEKTAIKLIKEYGSIENLLDQVDQITQKKLKENLMTYAQD 238 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 AR S+ L + DVP+ + + + LE L+ ++ Sbjct: 239 ARDSKMLATIICDVPLVYKWSDFEFDLALDSEATALFRDLELKSLLTKL 287 >gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13] gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13] Length = 866 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 211/573 (36%), Positives = 335/573 (58%), Gaps = 30/573 (5%) Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463 ++ + I + L+++ ++ +++ IFI+ + + +E + K+FFENE L Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELVKEEENIKSFKEFFENEAIL 375 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K G++IK L + GI G D L +Y++DS + + + S+ +LS Sbjct: 376 KNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-------- 427 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K + + E + + +L L+L+ K+ EK+ + ++ P+ V+S Sbjct: 428 ---------KFPNVKEGEEDLVGITFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME G ++++D+L ++S + + L ++ I++L+ E+FN++SPKQLG ILF KL P Sbjct: 479 MESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T A+ LE++ +PII+ I +RQLSKI STY + L I+ +H+ Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKAVIDTDGS-IHST 595 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILA 759 ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI P K+ LISADYSQIELR+LA Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFI--PKKEGDLLISADYSQIELRVLA 653 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 HI+ + F + DIH A+E+F V +E+V+P MR AK +NF I+YGI F L+ Sbjct: 654 HISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ 713 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA +Y+ YF R+P I EYI K + + GYV T+ RR + E N+ + Sbjct: 714 DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIV 773 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 + + ER A+NAPIQG+AADI + AM++V+ L++ L +K++LQ+HDEL+ V + E+ Sbjct: 774 KALGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ ME I L VPL V++ V +W Sbjct: 834 VKKLLKEEMENT----IKLSVPLDVDVNVGEDW 862 Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG+S + RAFYA PLLS +G NAI GF NML+K+ R++ + F Sbjct: 3 RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR+ Y DYKA R K+P L Q P+V+ + F I E+ GFEADDII + Sbjct: 58 DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 +AE EG V I++ DKD +QL + + T K E + + +++++G+ P + + Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GD DNIPG+PG+G KTA L++EYG++E +L N I KK +EN+ EY+E A Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237 Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289 S+KL + T+VPI L+ + +D N +L + L+ ++++++ Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286 >gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM 16841] gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM 16841] Length = 907 Score = 352 bits (902), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 177/408 (43%), Positives = 269/408 (65%), Gaps = 7/408 (1%) Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 +YE ++ P++ ++ ME TGI ID LK+ +++ + LE IY +GE+FN++SP Sbjct: 505 QLYETIEMPLVFTLADMEHTGIAIDAANLKEYGEKLAVRIKELETRIYQEAGEEFNINSP 564 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KL+ P G KTKTG + T A L+++ + PI+ +ILE+RQL+K+KSTYAD Sbjct: 565 KQLGVILFEKLEMPYGKKTKTG-YSTAADVLDKL-APEYPIVADILEYRQLTKLKSTYAD 622 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 L N+I K R+HT ++ T+TGRL+S EPNLQNIP++ +LG+ IR+AF+ + Sbjct: 623 GLANYI-KEDGRIHTSFNQTITVTGRLSSTEPNLQNIPMRIELGRLIRKAFLPAKGCVFM 681 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 ADYSQIELR+LAH++ L + + + DIHR+ A+++F + ++V+ RR+AK +NF Sbjct: 682 DADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTDLQRRNAKAVNF 741 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YGIS F L+ L I + EAA+YI+RYF +P I +++ ++NGYV T+FGRR Sbjct: 742 GIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKTFLDGLVEDAKKNGYVTTMFGRR 801 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 E++S R+ ER A+NAPIQG+AADI + AMI VH L + L +++++ +HD Sbjct: 802 RPVPELSSSNFMQRSFGERVAMNAPIQGTAADIIKIAMIRVHDRLLEEHLKSRLIITVHD 861 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EL+ E E+EI +I+ M++A +L+V L +++ NW E Sbjct: 862 ELLIETAEDEIDRVKEILTEGMQQAA----DLKVALAIDLHTGKNWYE 905 Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 102/291 (35%), Positives = 161/291 (55%), Gaps = 16/291 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG S + RAF+ P L+ +GL NA+ GF N+L+K+L+ E ++ V FD Sbjct: 5 LVLIDGHSILNRAFFGIPDLTNS-EGLHTNAVYGFLNILFKILE----EEQPNYLTVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y +YK R + E L Q+PL++ +A G+ +E G+EADDI+ T Sbjct: 60 VSQPTFRHKMYAEYKGTRKPMAEELREQVPLMKEMLKAMGVTIVEKGGYEADDILGTIAK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +E EG V+++S D+DL+QL + P T T + E + + V+ K+ + P + Sbjct: 120 RSEAEGLEVSVVSGDRDLLQLATDHIKIRIPKTKRTGT-EIEDYNTKEVLDKYHVTPIEF 178 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DNIPG+PGIG KTA L+ +YG++EN + IK + +N+ E E Sbjct: 179 IDVKALMGDTSDNIPGVPGIGEKTATALIAQYGSIENCYAHVDEIKPPRASKNLKENYEL 238 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINR 287 A++S+ L + I L+ LE D K LEF ++ R Sbjct: 239 AQMSKTLATIEIHADIDYDLQSARLEQIKDLYTEEAYLLCKRLEFKNMLGR 289 >gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E] gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii] gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii] gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii] gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii] gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22] Length = 867 Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 197/412 (47%), Positives = 265/412 (64%), Gaps = 7/412 (1%) Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 K +Y +D P ++ +ME GI++D + L ++S E +L +EE I+ LSG KFN+ Sbjct: 460 KAFRLYREIDLPTCFILDKMEKVGIKVDANYLNRLSDEFGTEILKIEEEIFALSGTKFNI 519 Query: 624 SSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 S KQLG+ILF K++ PSG KT + T A L++++ I +L WRQL+K+K+ Sbjct: 520 GSQKQLGEILFKKMQLPSGNTLAKTSSYSTRAGILKKLSEDGYHIATLLLRWRQLTKLKN 579 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY DSLP IN T+R+HT + ST TGRL+S EPNLQN+PI++ G KIR AFI+ Sbjct: 580 TYTDSLPKQINNITKRIHTTFLQTSTTTGRLSSQEPNLQNVPIRSSDGNKIREAFIAEEG 639 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 KLISADYSQIELRIL+HIA I L Q F N DIH A +IF + +++ + RR AK Sbjct: 640 YKLISADYSQIELRILSHIANIDVLKQAFINKEDIHTQTACQIFNLKKHELTSEHRRKAK 699 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 INF IIYGIS F LA QL + S A++YIK+YF + G+ EY+ +TK +NGYV Sbjct: 700 AINFGIIYGISAFGLAKQLNVSNSTASEYIKQYFAEYKGVQEYMTQTKACASRNGYVTNF 759 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 FGR+ I+ K ++ ERAAINAPIQG+ ADI + AMI + K +E+ KL T+++L Sbjct: 760 FGRKCFIPLIHDKK--LKQFAERAAINAPIQGTNADIIKIAMIKLDKEIEERKLKTRLIL 817 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+FEVPE E+ II ME + N+ VP+ IK NNW+E Sbjct: 818 QIHDELLFEVPEIEVEIVIPIIKKIMEHST----NMNVPIITEIKAGNNWKE 865 Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 127/320 (39%), Positives = 187/320 (58%), Gaps = 6/320 (1%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M K+N L L+DG F++RA+YA LS G PV A+ GF +ML KLL + + + + Sbjct: 1 MTKKNTLLLIDGYGFVFRAYYAQKSLSSAK-GEPVGALYGFTSMLLKLLSDFKPQ----Y 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A++FD FR++IY +YKANRP P+ L+ QLPLVR F +E G+EADDI Sbjct: 56 VAIVFDSGGKNFRHKIYQNYKANRPLPPKDLIAQLPLVRDVASNFKFAILEKNGYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IAT+ G V IIS+DKDL+QL+S +YD +K + I ++V+ K+G P+K+ Sbjct: 116 IATFATKTVSLGEEVIIISSDKDLLQLMSKNIKIYDPIKCKYITEDNVVTKFGTTPDKLR 175 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + AL GD DNIPG+P IG KTA+ L+ ++G++ENI + +I K+R+ + E A Sbjct: 176 EVMALIGDRSDNIPGVPSIGPKTASSLITKFGSVENIFNSLDQISSIKQRKTLQNAREAA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +S KL+ L ++V + L +L N +L FL+ F L RV +D + E Sbjct: 236 LISWKLIGLDSNVDLDFDLNNLKWSPPNSKKLTGFLQEYGFKSLYKRVENLFDIKINDHE 295 Query: 301 PVVLDINTTENKGIAIETEI 320 +V D TE K I+ +E+ Sbjct: 296 EIV-DNKVTEAKEISNASEL 314 >gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787] gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787] Length = 872 Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 187/489 (38%), Positives = 301/489 (61%), Gaps = 25/489 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE--HAIEN 545 D ++ +Y+L+ ++ ++ A IA+++L +IL I D+Q+ E + Sbjct: 405 DTIVAAYLLNPLKNDYESADIAREYL-----DIL-----------IDDNQIDEAQKSCYE 448 Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 + + +LR +L ++ +++ ++ P++ + ME G+++ + L ++ + Sbjct: 449 AYTAYESSKILRDRLKETEMEQLFDEIEMPLVFTLYDMEQNGVKVAAEALHIYGEQLGQK 508 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 ++ LE++IY+L+GE FN++SPKQLG ILF KL P G KTKTG + T+A L+++ + Sbjct: 509 IVDLEKDIYELTGETFNINSPKQLGVILFEKLGLPHGKKTKTG-YSTSADILDKL-APEY 566 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 P++ ILE+RQL+K+KSTYAD L +I K R+H ++ T TGR++S EPNLQNIP+ Sbjct: 567 PVVSKILEYRQLTKLKSTYADGLAGYI-KDDGRIHGKFNQTITATGRISSTEPNLQNIPV 625 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 + +LG+ IR+ FI + ADYSQIELRILAH + L ++ + DIHR+ A+++ Sbjct: 626 RMELGRLIRKVFIPEDGYVFVDADYSQIELRILAHCSGDEQLINAYKEARDIHRITASQV 685 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 F E+V+ RR+AK +NF I+YGIS F L+ L I + EAA YI+ YF +P I + Sbjct: 686 FHTPFEEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITKKEAAQYIESYFETYPSIKGF 745 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 ++ ++NGYV T+FGRR E++S R+ ER A+NAPIQG+AADI + AM Sbjct: 746 LDDAVEHAKENGYVTTVFGRRRPVPELSSSNFMQRSFGERVAMNAPIQGTAADIMKIAMN 805 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 V++ L+++ + +K++LQ+HDEL+ E EEE+ +I+ H M A L VPL+V+ Sbjct: 806 GVNRRLKENNMRSKLVLQVHDELLIEAYEEELEDVKEILSHEMVNAA----KLHVPLEVD 861 Query: 966 IKVSNNWQE 974 + NW E Sbjct: 862 MHTGKNWYE 870 Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 95/291 (32%), Positives = 161/291 (55%), Gaps = 11/291 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ +GL NA+ GF N+++K+L+ + E + V FD Sbjct: 5 IVLIDGHSILNRAFYGVPDLTNS-EGLHTNAVYGFLNIMFKILEEEKPE----YLTVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+E++ +YK R + + L Q+P+++ QA G+ IE G EADD++ T Sbjct: 60 VHAPTFRHEMFAEYKGTRKPMADELRQQVPVIKEVLQAMGVKTIEKAGLEADDLLGTLAK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIE-----HVIKKWGIPPEKMV 180 E+ G V++IS D+DL+QL + + K+ K +IE V ++ + PE+ + Sbjct: 120 RCEEMGMEVSVISGDRDLLQLATEHVKIRIPKTKQGKTEIEDYYAADVKARYQVTPEEFI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+AL GD+ DNIPG+P IG KTA ++ EYG++EN + + +K + + + E+ + A Sbjct: 180 DLKALMGDTSDNIPGVPSIGEKTATKIITEYGSIENAYAHVTELKPPRASKALSEHYDLA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 ++S+ L + + + L D + + L+F L++R T Sbjct: 240 QMSKVLATIHVNADFEYEIADAKLGDLYTEEAYVYFQRLQFKNLLSRFEVT 290 >gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto] gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto] Length = 875 Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 201/538 (37%), Positives = 317/538 (58%), Gaps = 34/538 (6%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501 N ++ + ++ FE++ KI +N K + +L + GI G + DI L +Y++D R Sbjct: 364 NNTKEQFIEVCREMFESKEIKKITYNAKNPRTILRKLGIDFNGIKFDINLAAYLIDPVRK 423 Query: 502 SHDIASIAQKWL--SYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558 ++I+S+A ++L + R+ E LK I+ N++ L+ +L Sbjct: 424 EYEISSLASEYLFKNINREDEFLK--------------------IKEVNIMPNLYKVLEE 463 Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 K+ + + + ++++P+ + +S ME G ++D+D+L Q+ + + S + IY +S Sbjct: 464 KIKDQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE 523 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 EKFN++SPKQLG ILF KL P KTKTG + T A+ L+++ +PII I +RQL+ Sbjct: 524 EKFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQLT 581 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 KI STY + L I++ ++H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI Sbjct: 582 KIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVFI 640 Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 P T ++SADYSQIELR+LAHI+ + F DIH A+E+F V IE+V+P Sbjct: 641 -PNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTPL 699 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 MR +AK +NF I+YGI F L+ L I R EA YI Y R+P + Y+E + Sbjct: 700 MRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAVEK 759 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GYV TI RR + E+ S ++ ER A+N+PIQGSAADI + AM++VH+ L++ Sbjct: 760 GYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHRKLKEDNF 819 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++LQ+HDEL+ V ++E+ ++ ME+ + L+V L V+I + NNW E Sbjct: 820 KSSIILQVHDELILNVHKDELERIKALVKKEMEQV----LELKVGLDVDINIGNNWYE 873 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 177/297 (59%), Gaps = 13/297 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L ++D +S + RAFYA P L +G+ NAI GF NML K+ KE I Sbjct: 1 MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEINPD 53 Query: 61 FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + V FD A TFR+E Y DYKA R K+PE L Q P+V+ A I EI GFEADD Sbjct: 54 YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADD 113 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175 +I T + AE++G V I++ DKD +QL + + T K +E D +I+++G+ Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIEEFGVT 173 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++ L GD+ DNIPG+PGIG KTA L++EY ++E +L N IK KK +EN+ E Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVLENIENIKGKKLKENLHE 233 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291 Y E A S+KL + +VPI + LE + E+ + ++ + LEF L+N+V+ + Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVRKMFERLEFKSLMNKVSKS 290 >gi|187778405|ref|ZP_02994878.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC 15579] gi|187772030|gb|EDU35832.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC 15579] Length = 875 Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 205/558 (36%), Positives = 327/558 (58%), Gaps = 35/558 (6%) Query: 420 TSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY 479 SFK E ID ++ KNT +E + K+ FE++ KI ++ K + VL + Sbjct: 348 VSFKDEVYRIDF------ETLLKNT-KEEFIEVCKEIFESKEIKKITYDSKNPRTVLRKL 400 Query: 480 GISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV 538 G+ G DI L +Y++D R ++I+S+A ++L K + + Sbjct: 401 GMEFNGINFDINLAAYLIDPVRKEYEISSLASEYLF-----------------KNINRED 443 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 ++ I+ N++ +L+ +L K+ + + + ++++P+ + +S ME G ++D+++L Q+ Sbjct: 444 EDLKIKEVNIMPKLYKVLEEKIKDQDIEELLYKIEQPLTETLSAMETEGFKVDKNILLQL 503 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 + + S + IY +S E+FN++SPKQLG ILF KL P KTKTG + T A+ L+ Sbjct: 504 EKKFKGEIESTQSEIYSMSEEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLD 562 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ +PII I +RQL+KI STY + L I++ ++H+ ++ T TGRL+S EP Sbjct: 563 KLR-DKHPIIDKITYYRQLTKIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEP 620 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLD 776 NLQNIPIK ++G++IR+ FI P T+ ++SADYSQIELR+LAHI+ + F D Sbjct: 621 NLQNIPIKYEMGREIRKVFI-PNTEDSVILSADYSQIELRVLAHISNDKNMISAFNEHDD 679 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH A+E+F V I++V+P MR +AK +NF I+YGI F L+ L I R EA YI Y Sbjct: 680 IHTKTASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYL 739 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+P + Y+E Q GYV TI RR + E+ S ++ ER A+N+PIQGSA Sbjct: 740 ERYPNVKIYLENIVEEAIQKGYVTTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSA 799 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AM++VH+ L++ + ++LQ+HDEL+ V ++E+ ++ ME+ + Sbjct: 800 ADIIKLAMVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVKREMEQV----L 855 Query: 957 NLRVPLKVNIKVSNNWQE 974 L+V L V+I + NNW E Sbjct: 856 ELKVGLDVDINIGNNWYE 873 Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 125/297 (42%), Positives = 176/297 (59%), Gaps = 13/297 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L ++D +S + RAFYA P L +G+ NAI GF NML K+ KE I Sbjct: 1 MNKE-RLLILDSNSLLNRAFYALPDLMT-EEGIHTNAIYGFVNMLLKM-----KEEIKPD 53 Query: 61 FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + V FD A TFR+E Y DYKA R K+PE L Q P+V+ A I EI GFEADD Sbjct: 54 YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAISIFEIDGFEADD 113 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175 +I T + AEK+G V I++ DKD +QL + + T K +E D +I+++G+ Sbjct: 114 LIGTLSVFAEKKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIEEFGVT 173 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++ L GDS DNIPG+PGIG KTA L++EY ++E +L N I+ KK +EN+ E Sbjct: 174 PKEFIDVKGLMGDSSDNIPGVPGIGEKTAFKLIKEYKSIETVLENIENIRGKKLKENLHE 233 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291 Y E A S+KL + +VPI I LE + E+ N ++ + LEF L+N+V + Sbjct: 234 YREQAIFSKKLATIMCNVPIEISLEEIKSKEEYNINKVRELFQRLEFKSLMNKVGKS 290 >gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2] Length = 833 Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 195/498 (39%), Positives = 302/498 (60%), Gaps = 33/498 (6%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+++ +D +L++Y+LD + + +A+++ + Sbjct: 364 REGVALDPTDDPLLVAYLLDPANTHPE--GVARRY----------------------GGE 399 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A E + + +L+ L P+L EKLL +Y+ +++P+ V++ ME G+++D LL+ Sbjct: 400 FTEDAAERALLSERLFQTLFPRL-SEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWKTTAQD 656 +S E+ K + LE ++ L+G FNL+S QL +LF +L P G KTG+ ++TAQ Sbjct: 459 LSFELEKEMERLEGEVFRLAGHPFNLNSRDQLERVLFDELGLTPVGRTEKTGK-RSTAQG 517 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + G +PI++ IL++R+LSK+KSTY D LP ++ RT R+HT ++ +T TGRL+S Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFNQTATATGRLSSS 577 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +PNLQNIP++T LGQ+IR+AF++ L++ADYSQIELR+LAH++ L +VF D Sbjct: 578 DPNLQNIPVRTPLGQRIRKAFVAEEGWLLLAADYSQIELRVLAHLSGDENLKRVFREGKD 637 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 IH AA +FG++ V +MRR AKT+NF ++YG+S RL+ +L I EA +I+RYF Sbjct: 638 IHTETAAWMFGLDPALVDQKMRRAAKTVNFGVLYGMSAHRLSQELGIDYKEAEAFIERYF 697 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + +IE+T R GYVET+FGRR + ++ S S+R ER A N P+QG+A Sbjct: 698 QSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTA 757 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 AD+ + AM+ + L+ L +LLQ+HDELV EVPE+ A ++ ME A Sbjct: 758 ADLMKIAMVKLFPRLK--PLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVMENAY---- 811 Query: 957 NLRVPLKVNIKVSNNWQE 974 L VPL+V + V +W E Sbjct: 812 PLDVPLEVEVGVGRDWLE 829 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 109/284 (38%), Positives = 154/284 (54%), Gaps = 12/284 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + LVDG YR FYA L + + G PV + GF L K L+ + + V+ Sbjct: 12 KRVLLVDGHHLAYRTFYALSLTTSR--GEPVQMVYGFARSLLKALKEDGQAVV-----VV 64 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD A +FR+E Y YKA R PE QL LV+ G+ +E G+EADD++ T Sbjct: 65 FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTL 124 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 AE+EG V I++ D+D QL+S + L D D++ +K+G+PPE+ V Sbjct: 125 AKKAEREGMEVRILTGDRDFFQLLSEKVSVLLPDGTLVTPKDVQ---EKYGVPPERWVDF 181 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +ALTGD DNIPG+ GIG KTA LL E+G +EN+L N R+K R I + E RL Sbjct: 182 RALTGDRSDNIPGVAGIGEKTALRLLAEWGGVENLLKNLDRVKPDSLRRKIEAHLEDLRL 241 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 S L +RTD+P+ + + L + L +FL+ LEF L++ Sbjct: 242 SLDLARIRTDLPLEVDFKALRRRAPDLEGLRAFLEELEFGSLLH 285 >gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626] gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626] Length = 866 Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 210/573 (36%), Positives = 337/573 (58%), Gaps = 30/573 (5%) Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463 ++ + I + L+++ ++ +++ IFI+ + + +E + K+FFENE L Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELVKEEENIKSFKEFFENEDIL 375 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K G++IK L + GI G D L +Y++DS + + + S+ +LS Sbjct: 376 KNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-------- 427 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K + + E + + + +L L+L+ K+ EK+ + ++ P+ V+S Sbjct: 428 ---------KFPNVKEGEEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME G ++++++L ++S + + L ++ I++L+ E+FN++SPKQLG ILF KL P Sbjct: 479 MESIGFKVNKNILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T A+ LE++ +PII+ I +RQLSKI STY + L + I+ +H+ Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGS-IHST 595 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILA 759 ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI P K+ LISADYSQIELR+LA Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFI--PKKEGDLLISADYSQIELRVLA 653 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 HI+ + F + DIH A+E+F V +E+V+P MR AK +NF I+YGI F L+ Sbjct: 654 HISGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQ 713 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA +Y+ YF R+P I EYI K + + GYV T+ RR + E N+ + Sbjct: 714 DLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKIV 773 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 + + ER A+NAPIQG+AADI + AM++V+ L++ L +K++LQ+HDEL+ V + E+ Sbjct: 774 KALGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDI 833 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ ME I L VPL V++ V +W Sbjct: 834 VKKLLKEEMENT----IKLSVPLDVDVNVGEDW 862 Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG+S + RAFYA PLLS +G NAI GF NML+K+ R++ + F Sbjct: 3 RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR+ Y DYKA R K+P L Q P+V+ + F I E+ GFEADDII + Sbjct: 58 DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 +AE EG V I++ DKD +QL + + T K E + + +++++G+ P + + Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GD DNIPG+PG+G KTA L++EYG++E +L N I KK +EN+ EY+E A Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237 Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289 S+KL + T+VPI L+ + +D N +L + L+ ++++++ Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286 >gi|327490470|gb|EGF22252.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1058] Length = 880 Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 206/515 (40%), Positives = 307/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL- 521 +++K K++L YGI + D L Y+L S +++A+IA+ + + T E+ Sbjct: 374 YDLKRTKVLLSHYGIELPAASFDARLAKYLL-STVEDNELATIARLYGQTILPTDDEVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P Q+ EH V+L+ ++ +L L + +++P+ V++ Sbjct: 433 KGAKRALP----EQEQLFEHLARKIQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI+++++ L+ + AE K L SL + IYDL+G++FN++SPKQLG ILF + P Sbjct: 489 KMEIAGIKVERETLQGMQAENEKTLESLTQEIYDLAGQEFNINSPKQLGTILFEDMGLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + I+ ILE+RQ+SK++STY L I ++HT Sbjct: 549 EYTKKTKTGYSTAVDVLERLAPIASIVSKILEYRQISKLQSTYIIGLQEAI-AADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWADSVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I++ L F++ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 668 ISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISDFGLAN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R A DYI+ YF RFPGI Y+E R GYVETI+ RR +INS +I Sbjct: 728 NLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINSRNFNI 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 RN ER AIN+PIQGSAADI + AMI++ ++L + ++MLLQ+HDE+V EVP +E+T Sbjct: 788 RNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A I L VPL + W E Sbjct: 848 VRKLVKETMEAA----IELAVPLVADENAGQTWYE 878 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 118/302 (39%), Positives = 166/302 (54%), Gaps = 19/302 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+K+N L L+DGSS +RAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R + GI ++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQLPFIREMLKHLGIHYYDLAQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AEK + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAEKTAVPYDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI PE+ + L+AL GD DNIPG+ IG KT LL EYG+LEN+ N ++K K Sbjct: 174 MEKMGITPEQFIDLKALMGDQSDNIPGVTKIGEKTGLKLLLEYGSLENLYENIDQLKASK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +EN++ + A LS+ L + T PI I L+ L+ + L F + F +L ++ Sbjct: 234 MKENLINDKDKAFLSKTLATINTQAPIEIGLDDLVYKGPQVEALSKFYDEMGFKQLKTQL 293 Query: 289 AT 290 T Sbjct: 294 GT 295 >gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7] gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7] Length = 880 Score = 351 bits (900), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 203/531 (38%), Positives = 317/531 (59%), Gaps = 26/531 (4%) Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504 ++ L LK FEN+ K+ HNIK V + GI+ + D + +Y++DS R + Sbjct: 372 NEDTLKCLKDIFENDKIEKVSHNIKVPYTVFKKMGINFTSVKFDTEIAAYLIDSSRGEYG 431 Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 + SI Q +L K +L+ + I ++ ++ + + E N ++ +L +E+ Sbjct: 432 LNSIIQDYL----KIMLQGEEDEI---RVKENSLLKDVFETLNKQIK-------ELNMEE 477 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 LL+ +++P+ V++ ME G ++D L+++ + + L+++IY L+ E+FN++ Sbjct: 478 LLY---EVEQPLTLVLAAMEYEGFKVDNVKLEELGEKFKIEIDKLKKDIYGLAEEEFNIN 534 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG ILF KL P KTKTG + T A+ LEQ+ +PII+ I +RQ +K+ STY Sbjct: 535 SPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEQL-LDKHPIIEKITYYRQFTKLYSTY 592 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 + L I+K ++H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ F+ Sbjct: 593 IEGLKAVIDK-DGKIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFVPEDENS 651 Query: 745 LI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 +I SADYSQIELR+LAHIA L F N DIH A+E+F V I++V+ R +AK Sbjct: 652 IILSADYSQIELRVLAHIADDENLIDAFLNHSDIHTKTASEVFKVPIDQVTKLQRSNAKA 711 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGI F LA L+I R EA +YI YF R+PG+ Y++ N YV TI Sbjct: 712 VNFGIVYGIGDFSLAKDLKISRKEAKNYIDTYFERYPGVKRYMDNVIKQAEDNLYVTTIM 771 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR EI + K ++ ER A+N PIQGSAADI + +M++V+ L+ L +K++LQ Sbjct: 772 NRRRFIPEIKNSKKMVKAFGERLAMNTPIQGSAADIIKMSMVNVYNILKSKNLKSKVILQ 831 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDEL+ V ++E+ +++ + ME + LRVPL+V+I + +NW E Sbjct: 832 VHDELILNVYKDELEEVKELVKNQMEDV----MKLRVPLEVDINLGDNWYE 878 Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 114/295 (38%), Positives = 168/295 (56%), Gaps = 15/295 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L ++DG+S + RAFYA P L+ GL N + GF ML K+ R+E ++ Sbjct: 1 MSKE-KLLILDGNSLMNRAFYALPPLTNSQ-GLHTNGVYGFVTMLLKM----REEINPNY 54 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 FD A TFR+ Y DYKA R ++PE L Q P+V+ I EI GFEADD+ Sbjct: 55 IVCTFDRSAPTFRHNEYKDYKAGRKRMPEELAEQFPVVKKLLNMLSISMFEIDGFEADDL 114 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPP 176 I T + AEK+ V I++ DKD +QL + + T K +E D +I ++ + P Sbjct: 115 IGTLSVYAEKKDIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMISEFEVTP 174 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + ++ L GD DNIPG+PG+G KTA L++EYG++EN+L N I KK +EN+++Y Sbjct: 175 TQFIDVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSIENVLNNIDNISGKKIKENLMQY 234 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINRV 288 +E A S+KL + +VPI I L + + D G + + L+F LI++V Sbjct: 235 SEQAVFSKKLATIMVNVPIEIDLNEIKSKENYDVEGVK--NLFIELQFKSLIDKV 287 >gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124] gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124] Length = 866 Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 209/571 (36%), Positives = 334/571 (58%), Gaps = 26/571 (4%) Query: 404 SKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFL 463 ++ + I + L+++ ++ +++ IFI+ + + +E + K+FFENE L Sbjct: 316 NEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELVKEEENIKSFKEFFENEDIL 375 Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K G++IK L + GI G D L +Y++DS + + + S+ +LS Sbjct: 376 KNGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLS-------- 427 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K + + E + + + +L L+L+ K+ EK+ + ++ P+ V+S Sbjct: 428 ---------KFPNVKEGEEDLVGISFMKELTLVLKKKIEEEKMERLMYDIELPLETVLSS 478 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME G ++++++L ++S + + L ++ I++L+ E+FN++SPKQLG ILF KL P Sbjct: 479 MESIGFKVNKNILDELSIKFKRELEETQKEIFELADEEFNINSPKQLGKILFEKLDLPVI 538 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T A+ LE++ +PII+ I +RQLSKI STY + L + I+ +H+ Sbjct: 539 KKTKTG-YSTNAEVLEKLK-DKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDGS-IHST 595 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHI 761 ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI L ISADYSQIELR+LAHI Sbjct: 596 FNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFIPKEEGDLLISADYSQIELRVLAHI 655 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 + + F + DIH A+E+F V +E+V+P MR AK +NF I+YGI F L+ L Sbjct: 656 SGDENMIDAFNHHSDIHTKTASEVFKVPVEEVTPLMRSRAKAVNFGIVYGIGDFSLSQDL 715 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I R EA +Y+ YF R+P I EYI K + + GYV T+ RR + E NS ++ Sbjct: 716 NISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYVLTMLNRRRYIPEANSSNKIVKA 775 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 + ER A+NAPIQG+AADI + AM++V+ L++ L +K++LQ+HDEL+ V + E+ Sbjct: 776 LGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVK 835 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ ME I L VPL V++ V +W Sbjct: 836 KLLKEEMENT----IKLSVPLDVDVNVGEDW 862 Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 111/289 (38%), Positives = 171/289 (59%), Gaps = 10/289 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG+S + RAFYA PLLS +G NAI GF NML+K+ R++ + F Sbjct: 3 RLLILDGNSLLNRAFYAVPLLSN-SEGTHTNAIYGFTNMLFKM----REDIKPDYIVCTF 57 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR+ Y DYKA R K+P L Q P+V+ + F I E+ GFEADDII + Sbjct: 58 DKKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLA 117 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 +AE EG V I++ DKD +QL + + T K E + + +++++G+ P + + Sbjct: 118 KVAEGEGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFID 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++ L GD DNIPG+PG+G KTA L++EYG++E +L N I KK +EN+ EY+E A Sbjct: 178 VKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQAI 237 Query: 242 LSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVA 289 S+KL + T+VPI L+ + +D N +L + L+ ++++++ Sbjct: 238 FSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLS 286 >gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra] gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra] Length = 875 Score = 350 bits (899), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 201/538 (37%), Positives = 316/538 (58%), Gaps = 34/538 (6%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501 N ++ + K+ FE + KI ++ K + +L + GI G + DI L +Y++D R Sbjct: 364 NNTKEQFIEVCKEMFEGKEIKKITYDAKNPRTILRKLGIEFNGIKFDINLAAYLIDPVRK 423 Query: 502 SHDIASIAQKWL--SYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558 ++I+S+A ++L + R+ E LK I+ N++ L+ +L Sbjct: 424 EYEISSLASEYLFKNINREDEFLK--------------------IKEVNIMPNLYKVLEE 463 Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 K+ + + + ++++P+ + +S ME G ++D+D+L Q+ + + S + IY +S Sbjct: 464 KIKEQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE 523 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 E+FN++SPKQLG ILF KL P KTKTG + T A+ L+++ +PII I +RQL+ Sbjct: 524 EEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQLT 581 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 KI STY + L I++ ++H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI Sbjct: 582 KIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVFI 640 Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 P T ++SADYSQIELR+LAHI+ + F DIH A+E+F V IE+V+P Sbjct: 641 -PNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTPL 699 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 MR +AK +NF I+YGI F L+ L I R EA YI Y R+P + Y+E + Sbjct: 700 MRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAVEK 759 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GYV TI RR + E+ S ++ ER A+N+PIQGSAADI + AM++VHK L++ Sbjct: 760 GYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHKKLKEDNF 819 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++LQ+HDEL+ V ++E+ ++ ME+ + L+V L V+I + NNW E Sbjct: 820 KSSIILQVHDELILNVHKDELEKIKALVKKEMEQV----LELKVGLDVDINIGNNWYE 873 Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 121/297 (40%), Positives = 176/297 (59%), Gaps = 13/297 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L ++D +S + RAFYA P L +G+ NAI GF NML K+ KE I Sbjct: 1 MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEIKPD 53 Query: 61 FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + V FD A TFR+E Y DYKA R K+PE L Q P+V+ A I EI GFEADD Sbjct: 54 YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADD 113 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175 +I T + AE++G V I++ DKD +QL + + T K +E D +++++G+ Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMMEEFGVT 173 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++ L GD+ DNIPG+PGIG KTA L++EY ++E +L N IK KK +EN+ E Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVLENIENIKGKKLKENLHE 233 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291 Y E A S+KL + +VPI + LE + E+ + ++ + LEF L+N+V + Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVRKMFERLEFKSLMNKVGKS 290 >gi|241896083|ref|ZP_04783379.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313] gi|241870683|gb|EER74434.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313] Length = 931 Score = 350 bits (899), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 203/529 (38%), Positives = 321/529 (60%), Gaps = 17/529 (3%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 S +K+ E+ LK N K + L R GI+++G D++L+SY+LD+ +++D+ ++A Sbjct: 409 SPVKRILEDSTILKNVFNAKELYVSLKRLGIALKGVSFDLLLVSYLLDTNDNNNDLGALA 468 Query: 510 QK---WLSYTRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 + T +E+ K K +IP +D+ EH + I L L +L+ + Sbjct: 469 HDNDYYAVMTDEEVYGKGAKFAIPA---ADADFFEHLGRKAMAINLLREPLLDRLLSHEQ 525 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 +YE ++ P+ +++ ME TGI +D + L Q+ +++++ L LE+ IY +G +FN+ S Sbjct: 526 TKLYEDIELPLTKILADMESTGITVDSEQLLQMRSKLTERLSELEQKIYQQAGHEFNIQS 585 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQLG +LF ++K+ KTKTG + T+ + LE++ GD PI+++IL +RQ++KI+STY Sbjct: 586 PKQLGVVLFEEMKYTPIKKTKTG-YSTSVEVLEKM--GDVPIVESILAYRQVAKIQSTYV 642 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 + L I+ +VHT Y T TGRL+S++PNLQNIP++ + G++IR+AF+ S + Sbjct: 643 EGLLRVIHGSDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRIEEGRQIRKAFVPSHSDWQ 702 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKT 803 ++SADYSQIELR+LAHI L F N DIH A IFG+ + E V +RR AK Sbjct: 703 ILSADYSQIELRVLAHITGDKNLQAAFINGEDIHAATARRIFGIKDDEPVEGNVRRQAKA 762 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS F L+ + + R EA I+ YF ++P + ++ + R+ GYVETI Sbjct: 763 VNFGIVYGISDFGLSKNIGVSRKEAKAIIETYFDQYPDVKKWSDDIIASARETGYVETIA 822 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I + + + R+ ER A+N+PIQGSAADI + AMI V ++E + MLLQ Sbjct: 823 HRRRYLPDIKAKRFNARSFAERTAMNSPIQGSAADIIKIAMIKVQAAIEQAGMQAHMLLQ 882 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE P E+ +++ M+ A + L VPL V+ V +W Sbjct: 883 VHDELIFEAPASEMADLEKLVTKVMDSA----VKLDVPLLVSSHVGASW 927 Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 105/319 (32%), Positives = 171/319 (53%), Gaps = 26/319 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSR-----KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L L+DG+S +RAFYA L+++ H+GL NA+ GF N+L ++ + Sbjct: 38 LLLIDGNSLAFRAFYA--LINQVDRFVNHEGLHTNALVGFNNLLDGII-----DPFNPDL 90 Query: 62 AVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A++ +D TFR + +YK NR P+ L+ Q +R + GI + E+ GFEADDI Sbjct: 91 ALVAWDAGKTTFRTGKFDNYKGNRDNTPQELVEQFEPLRKMVELHGIKSYELPGFEADDI 150 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GI 174 I T + E+ G++VTI++ D+D+ QLVS ++ T K+ +I+H G+ Sbjct: 151 IGTMARLGEENGYSVTIVTGDRDMTQLVSDDITVWVT-KKGISEIDHYTPAMIAELYDGL 209 Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 P+++V ++ L GD+ DN PG+ GIG KTA L+++Y ++ + +K K++E ++ Sbjct: 210 EPKQIVDIKGLQGDTSDNYPGVAGIGPKTALKLIKQYHSIPEMYEQIDEMKASKQKEKLV 269 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF----TKLINRVAT 290 + A LSR L + TD P+TI L L + +I F + L+F KL N+ T Sbjct: 270 NGKQDAMLSRDLAKILTDAPVTISLSDLNYHGPDYENIIPFYQHLDFKAQLVKLANQGYT 329 Query: 291 TYDCDAANIEPVVLDINTT 309 + + + DIN T Sbjct: 330 V--PTSGHTKDAEFDINNT 346 >gi|323704288|ref|ZP_08115867.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11] gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes] gi|323536354|gb|EGB26126.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11] Length = 867 Score = 350 bits (898), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 209/551 (37%), Positives = 324/551 (58%), Gaps = 31/551 (5%) Query: 439 STGKNTLTKEILSYLK-KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE------DIML 491 + G + EI Y K N+ IGH++K D LV IS G E D + Sbjct: 331 ACGDGSFFVEIDDYDNFKLLNNDKLTLIGHDLK-DFLV----NISYCGIELNCKILDTAI 385 Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEI------LKSRKSSIPIDKISDSQVQEHAIEN 545 M+Y+L+ S++DI+ + +K+L + I +++KS IDK A N Sbjct: 386 MTYLLNPSESNYDISRVLKKYLKEDLQNIDDIVGKGRNKKSYDDIDKKLLVDYMCSAASN 445 Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 + + + ++ +E LL + ++ P+I+V+ ME+ G +D+D+L+ +S EI + Sbjct: 446 LSKLKDKLMSFIKEMEMEDLL---KNVEIPLIEVLKSMEVYGFTLDKDVLRSISKEIDEK 502 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 + ++IYD +G +FN++S KQL + LF KL P+ KTKTG + T + L ++ N Sbjct: 503 TDKIVKDIYDAAGYEFNINSTKQLSEFLFDKLNLPAIKKTKTG-YSTDMEVLAEL-IPYN 560 Query: 666 PIIKNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 I+ I+E+RQL K+KSTY D +P I RVH+ + TGR++S EPNLQNIP Sbjct: 561 DIVGEIIEYRQLMKLKSTYIDGFIP--IMDENNRVHSTFKQTVAATGRISSTEPNLQNIP 618 Query: 725 IKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 ++ + G++IR+AF+S LI SADYSQIELR+LAH+++ L + F N+ DIH A+ Sbjct: 619 VREEFGRRIRKAFVSSYEDGLIISADYSQIELRVLAHLSEDEKLIESFLNNEDIHLRTAS 678 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 E+F V+ E+V+ +MRR AK +NF I+YGIS + L+ L+I R EA +YI YF R+ G+ Sbjct: 679 EVFKVSKEEVTSEMRRRAKAVNFGIVYGISDYGLSKDLKISRKEAKEYIDNYFDRYKGVK 738 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 YI+ F ++NGYV TI RR + EINS + R+ ER A+N PIQGSAADI + + Sbjct: 739 NYIDSIVKFAKENGYVTTILNRRRYIPEINSKNFNQRSFGERMAMNTPIQGSAADIIKMS 798 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ V+ L++ L ++++LQ+HDEL+ + +E+ +++ ME I L+VPL Sbjct: 799 MVKVYNELKERGLKSRLILQVHDELIIDTHPDEVEIVKELLKSIMENI----IKLKVPLV 854 Query: 964 VNIKVSNNWQE 974 V+I NW + Sbjct: 855 VDIGQGKNWYD 865 Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 110/284 (38%), Positives = 171/284 (60%), Gaps = 10/284 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DG+S +YRA++A P L +G+ NAI GF ML KLL+ + + IA + FD Sbjct: 4 FLIIDGNSLMYRAYFALPDLMN-SEGMHTNAIYGFSMMLLKLLEEEKPDYIA----IAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y YK R +PE L+ Q+ +++ AF I IEI+GFEADDII T + Sbjct: 59 KKASTFRHKEYSAYKGTRQSMPEELIEQVDILKDVINAFNIKTIEIEGFEADDIIGTVSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTT----CLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 IA + G V I++ D+D +QLVS C + ++ D + V +K+ + P + + L Sbjct: 119 IASESGMDVLIVTGDRDALQLVSANVKVKICKKGITQMDEYDEKAVFEKYEVTPLQFIDL 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+P IG KTA L++E+G++EN+L+N ++K K +EN+ AE A L Sbjct: 179 KGLMGDKSDNIPGVPNIGEKTAIKLVKEFGSIENLLMNTDKLKG-KIKENVENNAELAVL 237 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 S++L + +VPI I L +++ + +L + LEF+ LI+ Sbjct: 238 SKRLATIERNVPIDIDLNEYAVKNYDVNKLTELFEKLEFSSLIS 281 >gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425] gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425] Length = 982 Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 212/562 (37%), Positives = 320/562 (56%), Gaps = 37/562 (6%) Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLD 497 S G N L L+ E+ + K N KYD+LVL G+ ++G D ML SYVL+ Sbjct: 430 SQGGNLDLTLALEQLRPLLEDARYPKAFQNTKYDRLVLKFQGVHLQGVVFDTMLASYVLN 489 Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 SH++ +++K+L T + + + +S + + + QL LR Sbjct: 490 P-EGSHNLTDLSRKYLDITAQSYTDLVEKGQNLADLSVEAIANYCGLDVYATFQLVPKLR 548 Query: 558 PKLIVE--KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615 L+ KLL + +++P+ V++ ME GI+IDQD LKQ+S ++ ++L +LEE Y Sbjct: 549 ADLLDANPKLLDLLLTVEQPLEPVLAIMETCGIRIDQDYLKQLSQQLEQDLHALEERAYG 608 Query: 616 LSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673 L+GE FNL SPKQL ++LF KLK KTK G + T A LE++ GD+P+I ILE Sbjct: 609 LAGETFNLGSPKQLSELLFNKLKLDVKKSRKTKLG-YSTDAATLEKMQ-GDHPVIDLILE 666 Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733 R L+K+KSTY D+LPN + T RVHT ++ A T TGRL+S PNLQNIPI+T+ ++I Sbjct: 667 HRTLAKLKSTYVDALPNLVRSDTGRVHTDFNQAITATGRLSSSNPNLQNIPIRTEFSRQI 726 Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 R+AFI P L++ADYSQIELRILAH+++ L + ++ D+H++ A + + E + Sbjct: 727 RKAFIPEPGWMLVTADYSQIELRILAHLSQEPRLVEAYQQHQDVHKLTAQLL--LEKEDI 784 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 +P+ RR AK INF +IYG+ R A + + +A +I R++ R+P + Y+++ + Sbjct: 785 NPEERRLAKIINFGVIYGMGAQRFARESGVSFKQAKGFIDRFYERYPLVFRYLKQMEGQA 844 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINE---------------------RAAINAPI 892 GYVET+ GRR ++ + +R + RAA NAPI Sbjct: 845 IALGYVETLLGRRRYFSFDSRELQQLRGKDPDSLAELDLSQLKVSQYDRGQLRAAANAPI 904 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGS+ADI + AMI + + L+ ++ T++LLQ+HDELVFE+P E +I +M +A Sbjct: 905 QGSSADIIKVAMIKLQQRLQPYQ--TRLLLQVHDELVFEMPPSEWEPLRSLIQATMAEA- 961 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + L +PL I NW E Sbjct: 962 ---VPLSIPLLAEIHAGPNWME 980 Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 101/302 (33%), Positives = 152/302 (50%), Gaps = 25/302 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLS----RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L LVDG S +R++YA R G+P + GF L +++Q + + A Sbjct: 20 LLLVDGHSLAFRSYYAFARGREGGLRTSTGIPTSVCYGFLKSLLEVMQIEQ----PGYLA 75 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFR+E YK RP+ PE P L ++ A +P + + +EADDII Sbjct: 76 IAFDLGVPTFRHEAVESYKDGRPETPEDFKPDLENLKELLAALNLPVLTLATYEADDIIG 135 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLY-----------DTVKEEKIDIEHV 168 T A + + V I+S D+DL QL++P T L+ T + E V Sbjct: 136 TLARKASQSNYRVKILSGDQDLFQLINPEQGVTVLHLSSTFAPRTPLGTGHPREFGTEQV 195 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 +K GI P ++V +AL GDS DNIPG+ GIG KTA LL ++G+LE I + +IK Sbjct: 196 KEKLGILPSQVVDYKALCGDSSDNIPGVRGIGPKTAVQLLSQFGSLEQIYQSLDQIKGAT 255 Query: 229 RRENILEYAETARL-SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 R++ LE + L S+ L + DVP+ +HL L ++I L+ LEF + + Sbjct: 256 RQK--LESGHASALQSQYLAQIHLDVPLEATPDHLELRGFETSKVIPLLEKLEFQSFMGQ 313 Query: 288 VA 289 ++ Sbjct: 314 IS 315 >gi|291460329|ref|ZP_06599719.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262] gi|291417084|gb|EFE90803.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262] Length = 867 Score = 350 bits (897), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 193/500 (38%), Positives = 307/500 (61%), Gaps = 21/500 (4%) Query: 476 LHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534 L R IS +G ++D+ L +Y+L+ + S+D +++ +L +L S K ++ Sbjct: 386 LSRTEISEKGNWQDLSLAAYLLNPLKDSYDYDDLSRDYLGL----LLPSEK------ELG 435 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 DS E + + L + +K +Y ++ P++ + +ME +GI +D++ Sbjct: 436 DS---ERPGKYRAFLSLLSGKKLLSRLDKKERELYREIELPLVFTLHEMEESGILVDREA 492 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L AE+ + + + E IY +GE+FNL+SP+QLG ILF KL P G KTKTG + T A Sbjct: 493 LLSYGAELREKIGEIRERIYREAGEEFNLNSPQQLGQILFEKLGLPGGRKTKTG-YSTAA 551 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE+++ +N + +ILE+R SK+ STYA+ L + I + R+H ++ T TGR++ Sbjct: 552 DVLEKLSE-ENQLASDILEYRTYSKLNSTYAEGLLSWI-REDGRIHGHFNQMVTATGRIS 609 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIPI+T++G++ RR FI I ADYSQ+ELRILA ++ L + ++N+ Sbjct: 610 STDPNLQNIPIRTEMGRRFRRVFIPKEGSIFIDADYSQVELRILAALSGDEKLIRAYQNA 669 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH + A+E+F V + +V+PQ+RR+AK +NF I+YGIS F L+ L I R EA +YI+R Sbjct: 670 DDIHAVTASEVFHVPLSEVTPQLRRNAKAVNFGIVYGISAFGLSEGLSISRQEAKEYIER 729 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF +PG+ ++++ R+ GYV TIFGR+ +I+S + R+ ER A+N+PIQG Sbjct: 730 YFETYPGVKKFLDGEVELARKQGYVRTIFGRKRPVPDISSSNFARRSFGERVAMNSPIQG 789 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 SAADI ++AM V ++L+ +++LQ+HDEL+ E PE+E ++++ SM+ A Sbjct: 790 SAADIMKKAMNEVSRALKAGAFRARIVLQVHDELLLETPEKEADQVEELLILSMQNAA-- 847 Query: 955 KINLRVPLKVNIKVSNNWQE 974 LRVPL + K NW+E Sbjct: 848 --KLRVPLIADAKRGRNWEE 865 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 110/298 (36%), Positives = 166/298 (55%), Gaps = 22/298 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DG S + RAFY P L+ +G NA+ GF N +L + A H AV Sbjct: 3 ENRLLLIDGHSILSRAFYGIPELT-NSEGKHTNAVYGFLN----ILLKELELEEADHLAV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD PA TFR++++P+YK R +PE L Q+PL++ + IP ++ +G+EADDI+ T Sbjct: 58 AFDLPAPTFRHKLFPEYKGTRKAMPEELREQVPLMQELLSSMHIPILKKEGYEADDILGT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDI--EHVIKKWGI 174 +KEG V I+S D+DL+QL P T T E + E V +W + Sbjct: 118 IAKRMQKEGKEVVIVSGDRDLLQLADTRIKISLPKTSRGQT---EILSYFPEDVRAEWKV 174 Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA----SRIKQKKRR 230 PE+ + L+AL GDS DNIPG+PG+G KTA ++Q Y +EN +A ++ +K R Sbjct: 175 SPEEFIDLKALMGDSSDNIPGVPGMGPKTAEWIIQHYHTIENAKEHALEEDFKVPRKPRA 234 Query: 231 -ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 + +LE+ ++ARLS+ L + +VPI +E+ ++ ++ LEF L+ R Sbjct: 235 GQELLEHWDSARLSKTLATIFLEVPIDFDFRDARVENLFNEESLAMVRRLEFKSLVKR 292 >gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 870 Score = 350 bits (897), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 205/525 (39%), Positives = 318/525 (60%), Gaps = 28/525 (5%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK ENE KI H+ K VL++ IS++ FE D + +Y++DS RSS+D+ ++ + Sbjct: 369 LKAIMENEELTKIIHDGKSLVTVLNKLDISIKTFEFDTAIAAYLIDSARSSYDLLTLINE 428 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ-LWLLLRPKLIVEKLLHVYE 570 +L D + ++ E + N L+ ++ LL+ K+ EK+ +Y Sbjct: 429 YLGE---------------DITGEGEILEGKV---NFKLRDIYELLKKKIEEEKMEELYY 470 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 +++ P+I V+S ME G I++++L ++ + + + E+ IYDL+ E+FN++SPKQLG Sbjct: 471 KVEHPLIFVLSSMEALGFNINKNMLDDLAIKFKEEITRTEKEIYDLAEEEFNINSPKQLG 530 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL P KTKTG + T A+ LE++ + II I +RQ++K+ STY + L N Sbjct: 531 KILFEKLDLPVIKKTKTG-YSTNAEVLEKLQ-DKHEIIPKITYYRQITKLNSTYVEGLKN 588 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISAD 749 I+ +H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI L+S D Sbjct: 589 VIDSDGH-IHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFIPDEEGDILLSCD 647 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAH++ + F++ DIH A+E+F V IE V+ MR AK +NF I+ Sbjct: 648 YSQIELRVLAHMSNDENMIDAFKHHSDIHTKTASEVFKVPIEDVTSLMRSRAKAVNFGIV 707 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS F L+ L I + EA++Y++ YF R+P I Y++ ++NGYV TI RR Sbjct: 708 YGISDFSLSQDLHITKKEASEYMEIYFERYPKIKGYLDSVMQEAKENGYVLTILNRRRFI 767 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 EI S ++ + ER A+NAPIQGSAADI + AM++V+ L++ +L + M+LQ+HDEL+ Sbjct: 768 PEIKSSNRIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLKEKELKSTMILQVHDELI 827 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 V E E+ QI+ MEK ++++VPL+V+ + W E Sbjct: 828 LNVKENELEEVKQIVKDEMEKV----LDMKVPLEVDTNMGKTWYE 868 Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 100/260 (38%), Positives = 149/260 (57%), Gaps = 9/260 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D +S + RAFYA P L+ DG+ NA+ GF NML+K+ ++E + FD Sbjct: 4 LLILDSNSLLNRAFYAIPELTTS-DGIHTNAVYGFTNMLFKM----KEELKPDYIVAAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ Y DYKA R K+P L Q P+V+ I EI GFEADDII + Sbjct: 59 RKGPTFRHKEYEDYKAGRKKMPPELAEQFPIVKELLDLLSISKYEIDGFEADDIIGSLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCL 182 AEK V +++ D+D +QL S + T V E + D + ++++G+ P + + + Sbjct: 119 YAEKNNIEVYVVTGDRDALQLASDNINVVITKKGVTETAVYDHKTFVEEFGVTPTQFIDV 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+PG+G KTA L+Q YG++E +L N I KK +EN+ + E A Sbjct: 179 KGLMGDKSDNIPGVPGVGEKTAYKLIQTYGSVEEVLNNIDNISGKKLKENLENFREQAIF 238 Query: 243 SRKLVMLRTDVPITIPLEHL 262 S+KL + T+VPI L+ + Sbjct: 239 SKKLATIITEVPIEFDLDEI 258 >gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf] gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657] gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf] gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657] Length = 875 Score = 350 bits (897), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 203/539 (37%), Positives = 321/539 (59%), Gaps = 35/539 (6%) Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500 KNT ++ + K+ FE++ KI ++ K + +L + GI G + DI L +Y++D R Sbjct: 364 KNT-KEQFIEVCKEIFESKEIKKITYDAKNPRTILRKLGIEFNGIKFDINLAAYLIDPVR 422 Query: 501 SSHDIASIAQKWL--SYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 ++I+S+A ++L + R+ EILK I+ N++ +L+ +L Sbjct: 423 KEYEISSLASEYLFKNINREDEILK--------------------IKEVNMMPKLYKVLE 462 Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617 K+ + + + ++++P+ + +S ME G ++D+D+L Q+ + + S + IY +S Sbjct: 463 EKIKEQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS 522 Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677 E+FN++SPKQLG ILF KL P KTKTG + T A+ L+++ +PII I +RQL Sbjct: 523 EEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQL 580 Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 +KI STY + L I++ ++H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ F Sbjct: 581 TKIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVF 639 Query: 738 ISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 I P T ++SADYSQIELR+LAHI+ + F DIH A+E+F V IE+V+P Sbjct: 640 I-PNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTP 698 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 MR +AK +NF I+YGI F L+ L I R EA YI Y R+P + Y+E + Sbjct: 699 LMRGNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAVE 758 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GYV TI RR + E+ S ++ ER A+N+PIQGSAADI + AM++VH+ L++ Sbjct: 759 KGYVNTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHRKLKEDN 818 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++LQ+HDEL+ V ++E+ ++ ME+ + L+V L V+I + NNW E Sbjct: 819 FKSSIILQVHDELILNVYKDELEKIKALVKKEMEQV----LELKVGLDVDINIGNNWYE 873 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 176/297 (59%), Gaps = 13/297 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L ++D +S + RAFYA P L +G+ NAI GF NML K+ KE I Sbjct: 1 MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEIKPD 53 Query: 61 FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + V FD A TFR+E Y DYKA R K+PE L Q P+V+ A I EI GFEADD Sbjct: 54 YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKDLLAALAINIFEIDGFEADD 113 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175 +I T + AE++G V I++ DKD +QL + + T K +E D +I+++G+ Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIEEFGVT 173 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++ L GD+ DNIPG+PGIG KTA L++EY ++E +L N IK KK +EN+ E Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVLENIENIKGKKLKENLHE 233 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291 Y E A S+KL + +VPI + LE + E+ + ++ + LEF L+N+V + Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVRKMFERLEFKSLMNKVGKS 290 >gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065] Length = 875 Score = 350 bits (897), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 198/535 (37%), Positives = 315/535 (58%), Gaps = 28/535 (5%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501 N ++ + K+ FE++ KI ++ K + +L + GI G E DI L +Y++D R Sbjct: 364 NNTKEQFIEVCKEIFESKEIKKITYDAKNPRTILRKLGIEFNGIEFDINLAAYLIDPVRK 423 Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561 ++I+S+A ++L K + + + I+ N++ L+ +L K+ Sbjct: 424 EYEISSLASEYLF-----------------KNINREDEFLRIKEVNIMPNLYKVLEEKIK 466 Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 + + + ++++P+ + +S ME G ++D+D+L Q+ + + S + IY +S E+F Sbjct: 467 EQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF 526 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 N++SPKQLG ILF KL P KTKTG + T A+ L+++ +PII I +RQL+KI Sbjct: 527 NINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQLTKIY 584 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 STY + L I++ ++H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI P Sbjct: 585 STYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVFI-PN 642 Query: 742 TKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 T ++SADYSQIELR+LAHI+ + F DIH A+E+F V IE+V+P MR Sbjct: 643 TGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTPLMRG 702 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 +AK +NF I+YGI F L+ L I R EA YI Y R+P + Y+E + GYV Sbjct: 703 NAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAIEKGYV 762 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 TI RR + E+ S ++ ER A+N+PIQGSAADI + AM++VH+ L++ + Sbjct: 763 STILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHRKLKEDNFKSS 822 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++LQ+HDEL+ V ++E+ ++ ME+ + L+V L V+I + NNW E Sbjct: 823 IILQVHDELILNVHKDELEKIKALVKKEMEQV----LELKVGLDVDINIGNNWYE 873 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 176/297 (59%), Gaps = 13/297 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L ++D +S + RAFYA P L +G+ NAI GF NML K+ KE I Sbjct: 1 MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEINPD 53 Query: 61 FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + V FD A TFR+E Y DYKA R K+PE L Q P+V+ A I EI GFEADD Sbjct: 54 YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADD 113 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175 +I T + AE++G V I++ DKD +QL + + T K +E D +I+++G+ Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIEEFGVT 173 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++ L GD+ DNIPG+PGIG KTA L++EY ++E +L N IK KK +EN+ E Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVLENIENIKGKKLKENLHE 233 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291 Y E A S+KL + +VPI + LE + E+ + ++ + LEF L+N+V + Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVRKMFERLEFKSLMNKVGKS 290 >gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11] gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11] Length = 877 Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 197/492 (40%), Positives = 302/492 (61%), Gaps = 17/492 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543 D ML Y++ S + I++IA+ + L+ + K K ++P D+I + +H Sbjct: 396 DAMLAKYLI-STTEDNKISTIARLFDVGHLATDEEIFGKGTKLALPDDEI----LFDHLA 450 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 V+ + + +LI + H+ ++ P+ +V+++MEITGI + Q+ L+++ AE Sbjct: 451 RKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKMEITGISVSQNTLEEIGAENE 510 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L L IY+L+GE+FN++SPKQLG ILF KL+ P G KTKTG +TA D+ + Sbjct: 511 EKLALLTREIYELAGEEFNINSPKQLGVILFEKLQLPVGKKTKTGY--STAVDVLEDLAA 568 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 +P++ ILE+RQ++K++STY L I ++HT Y T TGRL+S++PNLQNI Sbjct: 569 LSPVVAKILEYRQINKVQSTYVKGLIPQI-ADDGKIHTRYVQDLTQTGRLSSVDPNLQNI 627 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 P++ + G+KIR+AF+ L+S+DYSQIELR+LAHI+ L F++ DIH + Sbjct: 628 PVRLEEGRKIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTSM 687 Query: 784 EIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +FG+ E V+ RR+AK +NF ++YGIS F LA L I R +A +YI+ YF R+PGI Sbjct: 688 RVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGI 747 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 Y+E R G+VET+ RR +IN+ ++R ER AIN+PIQGSAADI + Sbjct: 748 KTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKI 807 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI++ K+L + + +K+LLQ+HDE++ +VP EE+ ++ +ME+A I L VPL Sbjct: 808 AMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEEIQVLVKETMEEA----IELAVPL 863 Query: 963 KVNIKVSNNWQE 974 KV+ W E Sbjct: 864 KVDENTGKTWYE 875 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 167/299 (55%), Gaps = 13/299 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M+ +N L L+DGSS +RAF+A L R +GL NAI F ML L++ + Sbjct: 1 MEDKNRLLLIDGSSVAFRAFFALYNQLDRFKAPNGLHTNAIFAFHTMLSSLMERIQ---- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H + FD TFR E++ DYK R K P+ QLP ++ + GI E+ +EA Sbjct: 57 PTHVLIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEA 116 Query: 118 DDIIATYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171 DDII T +AE F VTI++ DKD++QLV T + + K E+ +++++K Sbjct: 117 DDIIGTLDKMAEAPDVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEK 176 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 G+ P + + L+AL GDS DN PG+ +G KT LLQE+G+LEN+ N +K K ++ Sbjct: 177 MGLTPSQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVETLKASKMKD 236 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 N++ E A LS++L + T P+ I LE +L++ N L F + F++ +++ T Sbjct: 237 NLIADKEMAFLSQQLATINTKTPLEIGLEDTLLKEKNVAELGQFYDEMGFSQFKSKLLT 295 >gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916] gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916] Length = 875 Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 200/538 (37%), Positives = 316/538 (58%), Gaps = 34/538 (6%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501 N ++ + K+ FE++ KI ++ K + +L + GI G + DI L +Y++D R Sbjct: 364 NNTKEQFIEVCKEMFESKEIKKITYDAKNPRTILRKLGIEFNGIKFDINLAAYLIDPVRK 423 Query: 502 SHDIASIAQKWL--SYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558 ++I+S+A ++L + R+ E LK I+ N++ L+ +L Sbjct: 424 EYEISSLASEYLFKNINREDEFLK--------------------IKEVNIMPNLYKVLEE 463 Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 K+ + + + ++++P+ + +S ME G ++D+D+L Q+ + S + IY +S Sbjct: 464 KIKEQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKRFKGEIESTQLEIYSMSE 523 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 E+FN++SPKQLG ILF KL P KTKTG + T A+ L+++ +PII I +RQL+ Sbjct: 524 EEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQLT 581 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 KI STY + L I++ ++H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI Sbjct: 582 KIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVFI 640 Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 P T ++SADYSQIELR+LAHI+ + F DIH A+E+F V IE+V+P Sbjct: 641 -PNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTPL 699 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 MR +AK +NF I+YGI F L+ L I R EA YI Y R+P + Y+E + Sbjct: 700 MRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAVEK 759 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GYV TI RR + E+ S ++ ER A+N+PIQGSAADI + AM++VH+ L++ Sbjct: 760 GYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHRKLKEDNF 819 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++LQ+HDEL+ V ++E+ ++ ME+ + L+V L V+I + NNW E Sbjct: 820 KSSIILQVHDELILNVHKDELEKIKALVKKEMEQV----LELKVGLDVDINIGNNWYE 873 Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 121/297 (40%), Positives = 176/297 (59%), Gaps = 13/297 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L ++D +S + RAFYA P L +G+ NAI GF NML K+ KE I Sbjct: 1 MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEINPD 53 Query: 61 FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + V FD A TFR+E Y DYKA R K+PE L Q P+V+ A I EI GFEADD Sbjct: 54 YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADD 113 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175 +I T + AE++G V I++ DKD +QL + + T K +E D +++++G+ Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMVEEFGVT 173 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++ L GD+ DNIPG+PGIG KTA L++EY ++E +L N IK KK +EN+ E Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIEIVLENIENIKGKKLKENLHE 233 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291 Y E A S+KL + +VPI + LE + E+ + ++ + LEF L+N+V + Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVREMFEKLEFKSLMNKVGKS 290 >gi|210135637|ref|YP_002302076.1| DNA polymerase I [Helicobacter pylori P12] gi|210133605|gb|ACJ08596.1| DNA polymerase I [Helicobacter pylori P12] Length = 903 Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 287/990 (28%), Positives = 469/990 (47%), Gaps = 114/990 (11%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKNKPLTNVK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVNGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 DIIA+ +A + I S DKD QL+S L+D E ++ ++K+GI P + Sbjct: 122 DIIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLVKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---KKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LENI N +K K + ++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLENIYENLDLVKNLLSPKMYQALIH 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 +A LS++L L+ ++ C P LK + K ++T D + Sbjct: 237 DKASAFLSKELATLQRGC-----IKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLE 291 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 + P++LD + A++ S+L + + N+ + + LE Sbjct: 292 NSPT-PLILDNAPALDNASALDNA------------SALDNAPASDNAPTKSRMIVLESA 338 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAIAISTL 414 + LS + ++KL+ + F +++ D K +A+A Sbjct: 339 EPLSMF-------------------LEKLKNPNARVFMRLVLDK----EKKVLALAFLLQ 375 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN--EHFLKIGHNIK-Y 471 DQ + E +F S L +L+ F +H +GH++K Sbjct: 376 DQGYFLPLE-EALFSPFS-----------------LEFLENAFSQMLQHAQIVGHDLKPL 417 Query: 472 DKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP 529 + +Y + + +D +++++ + + D + Y ++E+ IP Sbjct: 418 LSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD-----EVLREYLKEEL-------IP 465 Query: 530 IDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 +KI D +++ +E N + +L + E LL + ++ P + V+ ME Sbjct: 466 HEKIKDFKIKAEKLELLSVELNALKRLCEYFEKGGLEENLLALAREIETPFVKVLMGMEF 525 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 G +ID K++ E L LE I DL G FNL+SPKQLG+IL+ KL P Sbjct: 526 QGFKIDAPYFKRLEQEFKNELNILECQILDLIGVDFNLNSPKQLGEILYEKLGLP----- 580 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 K T ++L +I +P I ILE+R+L+K+ +TY L + + ++HT + Sbjct: 581 KNKSHSTDEKNLLKI-LDKHPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTFIQ 638 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKI 764 T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+LAH ++ Sbjct: 639 TGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQD 698 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + F DIH + +FG ++ K + R AK+INF ++YG+ +L+ L IP Sbjct: 699 KDLMEAFLKGRDIHLETSKALFGGDLAK---EKRSIAKSINFGLVYGMGSKKLSETLNIP 755 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 SEA YI+ YF RFP I +Y+ + K + + T+ GR +D N I+ Sbjct: 756 LSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FNGVNDYIKGNYL 814 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Q I Sbjct: 815 REGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPELQQEI 873 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + P LRVPL+ + V+N W E Sbjct: 874 QRILNDEVYP---LRVPLETSAFVANRWNE 900 >gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] Length = 887 Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 191/515 (37%), Positives = 306/515 (59%), Gaps = 11/515 (2%) Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEI 520 +GH++K + G + + D + +Y+L+ + +D+ S+A K+L T +E+ Sbjct: 377 VGHDLKALTHIFEAQGAQLVKMDFDTYVAAYLLEPADNRYDLKSLAAKYLDQTIVGEEEL 436 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 L ++ + +I+ + + I L L +L ++ +Y++++ P+I V+ Sbjct: 437 LGKGRTRRALAEIAAPERAAFIVGECAAIHGLHAELAHQLEEMEMTALYQKIELPLIPVL 496 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 + ME G +IDQ+ LK +SA + +L IY+ +G++FN++S KQLG ILF ++ P Sbjct: 497 ASMESIGFKIDQEQLKNLSAHFEARIETLTRQIYEEAGQRFNINSTKQLGMILFEEMGLP 556 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 KTKTG + T+ + LEQ+ N I+ +ILE+R ++K+ STY L ++ T++++ Sbjct: 557 PIKKTKTG-YSTSVEVLEQLRP-YNTIVDDILEYRTVTKLDSTYGRGLIKLVDPETEKIY 614 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759 + ++ T TGR++S +PNLQNIP++TDLG++IRR F+ S P L+ ADYSQIELR+LA Sbjct: 615 SHFNQTVTATGRISSSDPNLQNIPVRTDLGREIRRVFVPSSPMCVLVDADYSQIELRVLA 674 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+ + L + F + DIH A+EIF V +E V+ + R HAK INF +IYG F L Sbjct: 675 HLTQDENLLEAFAKNQDIHARTASEIFQVPLEDVTREQRSHAKAINFGLIYGKQAFSLGK 734 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 +L I R++A DYI YF R+P ++ Y++ + + GYV T++GRR + EI S I Sbjct: 735 ELGIGRNQAQDYIDMYFSRYPKVYAYMKAIREEAKTKGYVTTLYGRRRYIPEIQSRNRMI 794 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 ER A+N PIQGSAADI + AM+ V+ L + +LLQIHDEL+ E PE E Sbjct: 795 VQSGERMALNTPIQGSAADIMKIAMVKVYHRLAKESFRSHLLLQIHDELIIEAPETESEK 854 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ ME A ++L VPL V+ ++ +W E Sbjct: 855 ILRLLTEEMENA----VSLSVPLVVDARIGKSWYE 885 Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/299 (32%), Positives = 158/299 (52%), Gaps = 14/299 (4%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+DG+S ++R FY ++ G+P N I GF KLLQ + E + A FD Sbjct: 12 LIDGNSILFRMFYGVRTMTSSK-GVPTNGIFGFV----KLLQQIQNEMQPDYLAAAFDMA 66 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR++ Y YKA R K+PE L+ QL L++ +P + + G+EADDII T Sbjct: 67 QPTFRHQRYDAYKAGRDKMPEELITQLDLIKEILTQMQVPVVMLAGYEADDIIGTLAKKF 126 Query: 129 EKEGFAVTIISTDKDLMQLVSPTT-CLYDTVKEE----KIDIEHVIKKWGIPPEKMVCLQ 183 +G A II+ D+D QLV LY T + ++D ++ +K+GI P +++ ++ Sbjct: 127 SGKGVAAKIITGDRDSFQLVEDQVHILYTTTRSGNQFVEVDPVYIHEKYGIEPIELIQVK 186 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD DNIPGI GIG KTA +++Y ++ + + +K K++E + + A LS Sbjct: 187 ALMGDPSDNIPGIKGIGEKTALKFVKQYHTVDGLYEHIDELK-GKQKEKVAAGKDAAYLS 245 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC---DAANI 299 L + PI + + + D +++ LK LEFT ++ +++ DAA++ Sbjct: 246 LFLGEIDVKAPIEMDESDMQMRDLFNEQVVEILKELEFTSILRKLSAPMALPTGDAASV 304 >gi|320527462|ref|ZP_08028643.1| DNA-directed DNA polymerase [Solobacterium moorei F0204] gi|320132175|gb|EFW24724.1| DNA-directed DNA polymerase [Solobacterium moorei F0204] Length = 876 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 198/529 (37%), Positives = 324/529 (61%), Gaps = 22/529 (4%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQ 510 S L +F ++ K G ++K + + G+++ +D+ML + ++DS ++ A I + Sbjct: 363 SDLLAYFSSDMPHKYGFDVKRNLHLAENEGLTLNFHDDMMLAASLVDSSLTT--TAKIIE 420 Query: 511 KW-----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 ++ +SY K K ++ ID+ + Q +A + I +L+ + PKL K+ Sbjct: 421 RYGFENTVSY-EDVYGKPTKPNLIIDE--EKQCM-YACAFARNIFRLYAEITPKLQEYKM 476 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 +Y ++ P+ V+ ME GI+ D D+L +++ E + ++ IY L+ ++FN++S Sbjct: 477 EKLYYEMEMPLTTVLYHMEREGIRCDIDILDRIATETMAKISEAQKEIYVLAAKEFNINS 536 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQL ++LF L P+G K T A +LE++ G +PII ILE+R+LSKI STYA Sbjct: 537 PKQLAEVLFDDLGLPTGKKRSTA-----AGELEKLQ-GKSPIIDYILEYRKLSKIYSTYA 590 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745 + L +I ++ ++HT Y+ ++T TGRL+S EPNLQNI ++ + G++IR+AF+ L Sbjct: 591 EGLKKYI-QQDGKIHTIYNQSATQTGRLSSSEPNLQNISVRDEQGKEIRKAFLPENGCVL 649 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 IS+DY QIELR+LAH+A T L + F+ +DIH A ++F ++++ Q RR AKT+N Sbjct: 650 ISSDYHQIELRMLAHMANETSLIEAFKEGIDIHTKTAMDVFHKPQDEITAQDRRSAKTVN 709 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS F L+ QL + R EA D+I+RY+ +P I Y+++ + GYVET+ GR Sbjct: 710 FGIVYGISDFGLSEQLGVSRYEAHDFIERYYAAYPKIRIYMDQIVKDCEEKGYVETLCGR 769 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R EI+ + R +RAA+NAPIQGSAAD+ + AMI + + ++D K+ +KM+LQ+H Sbjct: 770 RREIPEIHDKNHATREFGKRAAMNAPIQGSAADLIKLAMIHIDQMMKDAKVKSKMILQVH 829 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DEL+F VP+EE+ +++I M A ++L+VPL + ++W E Sbjct: 830 DELIFNVPKEEVDVMTKLINDGMVNA----MHLQVPLTAECSIGSDWYE 874 Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 108/307 (35%), Positives = 177/307 (57%), Gaps = 20/307 (6%) Query: 7 LFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L L DG+S ++RA+YAT P+ + DG P NA+ GF +M+ K + + +++ Sbjct: 9 LLLTDGNSMLFRAYYATAYGRPMTTS--DGTPTNAVFGFASMIQKAIDIIQPDAVL---- 62 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR+E+Y DYK R P+ L+PQ LVR AF I +E+Q EADD+I Sbjct: 63 VAFDAGKHTFRHELYADYKGGRKPAPDDLVPQFKLVRDFLDAFAIAWVEMQNIEADDLIG 122 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPPE 177 T + A+ + ++++D D++QL+ TT + +K+ D+ E + ++ GI P Sbjct: 123 TISKKAKD--YQTYVLTSDHDMLQLIDETTSVL-LMKKGITDMDVVTPESLKEQMGIEPL 179 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ ++ L GD DNIPGIPGIG KTA LL+EYG +EN++ N ++K +++ ++E Sbjct: 180 QIIDMKGLMGDKSDNIPGIPGIGEKTALKLLEEYGTVENVIANEDKLKGALQKK-VMEGH 238 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 ++A LS+KL +R D+ + + + L N P+L+ FL+ LE L R + + Sbjct: 239 DSALLSKKLATIRRDIDVEMSEKELSFTP-NYPQLVKFLQMLEMNTLARRFSDKITIEEN 297 Query: 298 NIEPVVL 304 E +V+ Sbjct: 298 TTEEIVV 304 >gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree] gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree] Length = 875 Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 200/538 (37%), Positives = 317/538 (58%), Gaps = 34/538 (6%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501 N ++ + K+ FE++ KI ++ K + +L + GI G + DI L +Y++D R Sbjct: 364 NNTKEQFIEVCKEIFESKEIKKITYDAKNPRTILRKLGIEFNGIKFDINLAAYLIDPVRK 423 Query: 502 SHDIASIAQKWL--SYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558 ++I+S+A ++L + R+ E LK I+ N++ L+ +L Sbjct: 424 EYEISSLASEYLFKNINREDEFLK--------------------IKEVNIMPNLYKVLEE 463 Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 K+ + + + ++++P+ + +S ME G ++D+D+L Q+ + + S + IY +S Sbjct: 464 KIKDQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE 523 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 E+FN++SPKQLG ILF KL P KTKTG + T A+ L+++ +PII I +RQL+ Sbjct: 524 EEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQLT 581 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 KI STY + L I++ ++H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI Sbjct: 582 KIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVFI 640 Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 P T ++SADYSQIELR+LAHI+ + F DIH A+E+F V IE+V+P Sbjct: 641 -PNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTPL 699 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 MR +AK +NF I+YGI F L+ L I R EA YI Y R+P + Y+E + Sbjct: 700 MRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAVEK 759 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GYV TI RR + E+ S ++ ER A+N+PIQGSAADI + AM++VH+ L++ Sbjct: 760 GYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHRKLKEDNF 819 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++LQ+HDEL+ V ++E+ ++ ME+ + L+V L V+I + NNW E Sbjct: 820 KSSIILQVHDELILNVYKDELEKIKALVEKEMEQV----LELKVGLDVDINIGNNWYE 873 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/297 (41%), Positives = 176/297 (59%), Gaps = 13/297 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L ++D +S + RAFYA P L +G+ NAI GF NML K+ KE I Sbjct: 1 MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEINPD 53 Query: 61 FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + V FD A TFR+E Y DYKA R K+PE L Q P+V+ A I EI GFEADD Sbjct: 54 YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADD 113 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175 +I T + AE++G V I++ DKD +QL + + T K +E D +I+++G+ Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMIEEFGVT 173 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++ L GD+ DNIPG+PGIG KTA L++EY ++E +L N IK KK +EN+ E Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVLENIENIKGKKLKENLHE 233 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291 Y E A S+KL + +VPI + LE + E+ + ++ + LEF L+N+V + Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVRKMFERLEFKSLMNKVGKS 290 >gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 870 Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 186/487 (38%), Positives = 294/487 (60%), Gaps = 22/487 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ + +Y+L+ +S + WL + + S+ ID+ ++ + + + Sbjct: 404 DVGIAAYLLNPLKSDY-------TWLDVAAEHL------SLLIDEKTEGYCR--SCYEAY 448 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 VI +L K+ ++ ++ P++ + ME G++++ + L+ ++ ++ Sbjct: 449 VIWAAAAVLEEKMKESGTEELFRTIEMPLLFTLFAMEQAGVRVEAEALRFYGEQLGTKIV 508 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 LE+ IY +GE FN++SPKQLG ILF KLK P G KTKTG + T A L+++ + P+ Sbjct: 509 ELEKEIYAQAGEAFNINSPKQLGVILFEKLKLPHGKKTKTG-YSTAADVLDKL-APEYPV 566 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 ++ ILE+RQL+K+KSTYAD L N+I R+H ++ T TGR++S EPNLQNIP++ Sbjct: 567 VEKILEYRQLTKLKSTYADGLANYICA-DGRIHGKFNQTITATGRISSTEPNLQNIPVRM 625 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 +LG+ IR+ FI + ADYSQIELRILAH + L + + DIHR+ A+++F Sbjct: 626 ELGRLIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRITASQVFH 685 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 ++V+ RR+AK +NF I+YGIS F L+ L I R EA++YI RYF +PGI ++++ Sbjct: 686 TPFDEVTELQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASEYIDRYFETYPGIKKFLD 745 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 T ++ GYV T+FGRR E+ S R+ ER A+NAPIQG+AAD+ + AMI V Sbjct: 746 DTVAHAKEMGYVVTLFGRRRPVPELASSNFMQRSFGERVAMNAPIQGTAADVMKIAMIGV 805 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 H+ L + K+ ++++LQ+HDEL+ E EEE+ +I+ ME+A L VPL+V++ Sbjct: 806 HRELTERKMKSRLVLQVHDELLIEAYEEELEDVKKILKEQMEQAA----QLDVPLEVDMH 861 Query: 968 VSNNWQE 974 NW E Sbjct: 862 TGRNWYE 868 Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 98/296 (33%), Positives = 165/296 (55%), Gaps = 15/296 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ +GL NAI GF N+L+K+L+ R + + V FD Sbjct: 5 IVLIDGHSILNRAFYGVPDLTNA-EGLHTNAIYGFLNILFKILEEERPD----YLTVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++++ DYK R + E L Q+P+++ +A I +E +G EADD++ T Sbjct: 60 VHAPTFRHKMFSDYKGTRKPMAEELRQQVPVMKEVLRAMKIKIVEQEGLEADDLLGTIAG 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180 I E+ G V I+S D+DL+QL + + K+ K +IE V ++ + P++ + Sbjct: 120 IGERAGMDVAILSGDRDLLQLATDHVKIRIPKTKQGKTEIEDYYAADVKARYQVTPQEFI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+AL GD+ DNIPG+P IG KTA ++ EYG++EN + +K + + + E+ + A Sbjct: 180 DLKALMGDASDNIPGVPSIGEKTATKIITEYGSVENAYAHVEELKPPRAAKALKEHYDKA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 ++S+ L + + PI+ L + + + + L+F L+ R +D +A Sbjct: 240 QMSKILATIEVNAPISYELSEAKIGNLYTEEAYEYFQKLQFKNLLGR----FDVEA 291 >gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541] gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541] Length = 876 Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 197/492 (40%), Positives = 290/492 (58%), Gaps = 25/492 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L Y+L S DI A L + P D +SD Q E + Sbjct: 403 DLELGDYLLHPEESRRDIERTAFA---------LCGDAAEAPAD-LSDEQRAER---EAQ 449 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 + +L L+ L LL +Y+ ++ P++ V++ ME TGI +++ L++ A + + Sbjct: 450 LAARLHSPLQAALAEAGLLPLYQDVELPLVPVLAAMEQTGIYVNRTALERERAAANARID 509 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK---TKTGQWKTTAQDLEQINCGD 664 +L E I+ L+G +FN+SSPKQLG++LF +L+ +G K TKTG + T A+ LE++ Sbjct: 510 ALAEEIHALAGMEFNISSPKQLGEVLFERLELAAGTKIKKTKTG-YSTNAETLEELR-DR 567 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 +PI+ +L +R +K++STY D + I T RV+T ++ T TGRL+S +PNLQNIP Sbjct: 568 HPIVDKVLTYRMWTKLRSTYLDGIGALIRPETGRVYTNFNQTVTATGRLSSSDPNLQNIP 627 Query: 725 IKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 ++T+ G+ +R A P L+SADYSQIELRILAH++ L F + DIH A Sbjct: 628 VRTEEGRAVR-ALFEPGEGYDVLLSADYSQIELRILAHMSGDATLIDAFRHGQDIHARTA 686 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV I+ V+ + RR AK +NF I+YG+S + L+ LRIPR EAA YI+RYF R+ G+ Sbjct: 687 AEVFGVPIDAVTGEQRRRAKAVNFGIVYGLSDYGLSRDLRIPRKEAAGYIERYFERYHGV 746 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 E+++KT NGYV T++GRR INS R+ ER A+N PIQG+AAD+ + Sbjct: 747 REFLDKTVADAHANGYVTTLYGRRRELSAINSRNYMQRSFAERMAMNTPIQGTAADLIKI 806 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI H +L + +++LLQ+HDELV E E EI S ++ +M A L VPL Sbjct: 807 AMIRAHDALHAAGVKSRILLQVHDELVLEAAEAEIAQVSGLLRTAMSGAA----ELAVPL 862 Query: 963 KVNIKVSNNWQE 974 V++ + NW E Sbjct: 863 AVDVHIGKNWAE 874 Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 101/250 (40%), Positives = 144/250 (57%), Gaps = 9/250 (3%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++DGSS +RAFYA L G+ NA+ GF ML KLL+ E I + FD Sbjct: 7 ILDGSSLFFRAFYALQLPPNAR-GVHTNAVHGFAMMLVKLLKELAPEQIV----IAFDKS 61 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR EIYPDYK R K PE L Q+PL++ +A GIP +E +EADDII T A Sbjct: 62 RTTFRTEIYPDYKGTRDKTPEELTAQIPLLKELAEALGIPFLERDHYEADDIIGTLGTQA 121 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQA 184 EG +++ D+D +QL+ P + T K + D +++G P +++ ++ Sbjct: 122 VDEGTETAVVTGDRDALQLIRPHLTVMLTKKGISEMKSYDAAVFEEEYGFVPGRLIDMKG 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS DNIPG+PGIG KTA LL YG++EN+L +A+ + KK +++EY + A LS+ Sbjct: 182 LMGDSSDNIPGVPGIGPKTATKLLIAYGSIENVLDHAAEVSGKKLSTSLIEYRDQALLSK 241 Query: 245 KLVMLRTDVP 254 L + +VP Sbjct: 242 ALATIECNVP 251 >gi|258424106|ref|ZP_05686988.1| DNA polymerase I [Staphylococcus aureus A9635] gi|257845727|gb|EEV69759.1| DNA polymerase I [Staphylococcus aureus A9635] Length = 876 Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 E++S+L EN + K+ ++ K + HR GI ++ DIML SY++D R+ D+ Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412 Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+ + S+ + ++ K +K +P D + + V I +P + Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462 Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +K L Y + L+ P+ ++S+ME GI D L+++ EI + L L NI+D Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDA 522 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +GE FN++SPKQLG +LF L+ P KTKTG + T LEQ+ G++PII ILE+RQ Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 LSK++STY + L I+ QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+A Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639 Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 F PT K ++SADYSQIELR+LAHI + + + F N DIH A ++FGV ++V Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 MRR AK +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET+ RR + +I S ++R ER A+N PIQGSAADI + AM+ + +++ Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 K+LLQ+HDEL+FEVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L+ + + + A Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDA 295 Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333 IE +++ T K AI E+D R+ +K S F+ Sbjct: 296 IEKTFEIETSFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341 >gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093] gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093] Length = 867 Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 201/499 (40%), Positives = 287/499 (57%), Gaps = 32/499 (6%) Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536 R G+ +R +D +LM+YVLD S+ D ++ +R+ P + Sbjct: 398 QRCGLEVRPGDDPLLMAYVLDP--SAADPETL--------------TRRYGTPAWGATAV 441 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 E S LRPKL L +YE +++P+ +V++ ME+TG+++D L Sbjct: 442 ARAVATAELSRT-------LRPKL-AGALRRLYEEIERPVAEVLAHMEVTGVRLDTAALA 493 Query: 597 QVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 S +++ L +LE + +L+G NL+S QL ++LF KL+ +G KT TG+ T Sbjct: 494 AQSESLAEKLAALEREVRELAGNPNLNLNSRDQLAELLFEKLELQAGRKTSTGKRSTAVS 553 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE + +P++ ILE+R+L+K+KSTY D LP IN T R+HT ++ +T TGRL+S Sbjct: 554 ALEPLKDA-HPVVPLILEYRELAKLKSTYLDPLPRLINPHTGRLHTTFNQTATATGRLSS 612 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 PNLQNIP++T +G++IRRAF++ L+ ADYSQIELRILAHI L + F Sbjct: 613 ANPNLQNIPVRTAVGREIRRAFVADEGATLLVADYSQIELRILAHITGEEALVETFRRGE 672 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR AA+IFGV E V+P+ RR AK INF ++YG+S RLA +L IP +EA +I+ Y Sbjct: 673 DIHRRTAAQIFGVPPEAVTPEGRRVAKVINFGVLYGMSAHRLARELSIPYAEADAFIRSY 732 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P + YI++T F R GYVET+FGRR +I S + R ER A N PIQG+ Sbjct: 733 FEGYPKVRAYIDETLAFARDKGYVETLFGRRRPIPDIRSSNRNAREYAERTAYNMPIQGT 792 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 ADI + AM+ + L+ H K+LLQ+HDELV E PE + + ME A Sbjct: 793 QADIVKLAMVRLLPRLKAH--GAKLLLQVHDELVLEAPEGAAEAVAAEVKAVMEGA---- 846 Query: 956 INLRVPLKVNIKVSNNWQE 974 +RVPL + NW E Sbjct: 847 FAMRVPLVAEVGRGRNWLE 865 Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 101/287 (35%), Positives = 155/287 (54%), Gaps = 4/287 (1%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + + ++DG + +R++YA LS G P NAI GF L ++L +E V Sbjct: 31 HKIVIIDGHALAFRSYYAIRELSNSR-GEPTNAIYGFLRSLLRILA---EEGEFDATVVT 86 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD PA +FR+E + YKA R PE L Q+ +++ G+ IE+ G EADD+I T Sbjct: 87 FDAPAKSFRHEQFEGYKAGRRDTPEDLPEQIRIIKQLVDLLGLYRIEVPGLEADDLIGTI 146 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 ++G+ V I+++D+D QLVS + K E+ + V +K+G+ ++ V +A Sbjct: 147 AARCAEKGYTVEIVTSDRDAYQLVSDRVYVRGLAKAERFGPDEVFEKFGVRVDQWVDFRA 206 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 LTGD+ DNIPG GIG KTAA LLQ+YG+L+ IL N R+K + + + E + SR Sbjct: 207 LTGDASDNIPGAKGIGPKTAAKLLQDYGSLDAILENLERVKPESAAKKVRASLEDVKFSR 266 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 +L + TD +T+ E + L L+ LEF +I + T Sbjct: 267 ELSRIITDADLTVTPEVWAQREPQREALRELLERLEFGSIIRELGLT 313 >gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium 4_1_37FAA] Length = 870 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 185/487 (37%), Positives = 294/487 (60%), Gaps = 22/487 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ + +Y+L+ +S + WL + + S+ ID+ ++ + + + Sbjct: 404 DVGIAAYLLNPLKSDY-------TWLDVAAEHL------SLLIDEKTEGYCR--SCYEAY 448 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 VI +L K+ ++ ++ P++ + ME G++++ + L+ ++ ++ Sbjct: 449 VIWAAAAVLEEKMKESGTEELFRTIEMPLLFTLFAMEQAGVRVEAEALRLYGEQLGTKIV 508 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 LE+ IY +GE FN++SPKQLG ILF KL+ P G KTKTG + T A L+++ + P+ Sbjct: 509 ELEKEIYAQAGEAFNINSPKQLGVILFEKLRLPHGKKTKTG-YSTAADVLDKL-APEYPV 566 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 ++ ILE+RQL+K+KSTYAD L N+I R+H ++ T TGR++S EPNLQNIP++ Sbjct: 567 VEKILEYRQLTKLKSTYADGLANYICA-DGRIHGKFNQTITATGRISSTEPNLQNIPVRM 625 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 +LG+ IR+ FI + ADYSQIELRILAH + L + + DIHR+ A+++F Sbjct: 626 ELGRLIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRITASQVFH 685 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 ++V+ RR+AK +NF I+YGIS F L+ L I R EA++YI RYF +PGI ++++ Sbjct: 686 TPFDEVTELQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASEYIDRYFETYPGIKKFLD 745 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 T ++ GYV T+FGRR E+ S R+ ER A+NAPIQG+AAD+ + AMI V Sbjct: 746 DTVAHAKEMGYVVTLFGRRRPVPELASSNFMQRSFGERVAMNAPIQGTAADVMKIAMIGV 805 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 H+ L + K+ ++++LQ+HDEL+ E EEE+ +I+ ME+A L VPL+V++ Sbjct: 806 HRELTERKMKSRLVLQVHDELLIEAYEEELEDVKKILKEQMEQAA----QLDVPLEVDMH 861 Query: 968 VSNNWQE 974 NW E Sbjct: 862 TGRNWYE 868 Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 98/296 (33%), Positives = 165/296 (55%), Gaps = 15/296 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ +GL NAI GF N+L+K+L+ R + + V FD Sbjct: 5 IVLIDGHSILNRAFYGVPDLTNA-EGLHTNAIYGFLNILFKILEEERPD----YLTVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++++ DYK R + E L Q+P+++ +A I +E +G EADD++ T Sbjct: 60 VHAPTFRHKMFSDYKGTRKPMAEELRQQVPVMKEVLRAMKIKIVEQEGLEADDLLGTIAG 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180 I E+ G V I+S D+DL+QL + + K+ K +IE V ++ + P++ + Sbjct: 120 IGERAGMDVVILSGDRDLLQLATDHVKIRIPKTKQGKTEIEDYYAADVKARYQVTPQEFI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+AL GD+ DNIPG+P IG KTA ++ EYG++EN + +K + + + E+ + A Sbjct: 180 DLKALMGDASDNIPGVPSIGEKTATKIITEYGSVENAYAHVEELKPPRAAKALKEHYDKA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 ++S+ L + + PI+ L + + + + L+F L+ R +D +A Sbjct: 240 QMSKILATIEVNAPISYELSEAKIGNLYTGEAYEYFQKLQFKNLLGR----FDVEA 291 >gi|323440766|gb|EGA98475.1| DNA polymerase I [Staphylococcus aureus O11] gi|323442921|gb|EGB00544.1| DNA polymerase I [Staphylococcus aureus O46] Length = 876 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 E++S+L EN + K+ ++ K + HR GI ++ DIML SY++D R+ D+ Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412 Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+ + S+ + ++ K +K +P D + + V I +P + Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462 Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +K L Y + L+ P+ ++S+ME GI D L+++ EI + L L NI+D Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDA 522 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +GE FN++SPKQLG +LF L+ P KTKTG + T LEQ+ G++PII ILE+RQ Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 LSK++STY + L I+ QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+A Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639 Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 F PT K ++SADYSQIELR+LAHI + + + F N DIH A ++FGV ++V Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 MRR AK +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET+ RR + +I S ++R ER A+N PIQGSAADI + AM+ + +++ Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 K+LLQ+HDEL+FEVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L+ + + + A Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDA 295 Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333 IE +++ T K AI E+D R+ +K S F+ Sbjct: 296 IEKTFEIETSFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341 >gi|283470957|emb|CAQ50168.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ST398] Length = 876 Score = 348 bits (893), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 E++S+L EN + K+ ++ K + HR GI ++ DIML SY++D R+ D+ Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412 Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+ + S+ + ++ K +K +P D + + V I +P + Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVA--------FITDAIYFAKPNM-- 462 Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +K L Y + L+ P+ ++S+ME GI D L+++ EI + L L NI+D Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDA 522 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +GE FN++SPKQLG +LF L+ P KTKTG + T LEQ+ G++PII ILE+RQ Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 LSK++STY + L I+ QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+A Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639 Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 F PT K ++SADYSQIELR+LAHI + + + F N DIH A ++FGV ++V Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 MRR AK +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKVFIDDYLASFPGVKQYMSDIVKDA 757 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET+ RR + +I S ++R ER A+N PIQGSAADI + AM+ + +++ Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 K+LLQ+HDEL+FEVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 122/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L+ + + + A Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASGEDA 295 Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333 IE +++ T + AI E+D R+ +K S F+ Sbjct: 296 IEKTFEIETSFDNVDFTSLEEAAIHFELDGGNYLRNNILKFSLFTG 341 >gi|309805236|ref|ZP_07699288.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c] gi|308165470|gb|EFO67701.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c] Length = 439 Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 187/438 (42%), Positives = 282/438 (64%), Gaps = 13/438 (2%) Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 H +V+ +L + P+L + LH+Y+ ++ P+ ++++MEI GI++ L ++ Sbjct: 9 HMATKVDVLDKLKAKIMPELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKN 68 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 ++ + L+ IY L+GEKFN++SPKQLG ILF KLK KTKTG + T+ LE++ Sbjct: 69 DLDVRITDLKNKIYQLAGEKFNINSPKQLGVILFDKLKLTPAKKTKTG-YSTSVDVLEKL 127 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 +PI+ +IL++RQ+SKI+STY + L ++I + ++HT + T TGRL+S+EPNL Sbjct: 128 EY-QSPIVADILDYRQISKIQSTYINGLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNL 185 Query: 721 QNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDI 777 QNIP+K + G++IR+AF+ P K+ L S DYSQ+ELR+LAH++ + + F+ DI Sbjct: 186 QNIPVKLEEGKQIRKAFV--PCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDI 243 Query: 778 HRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 H A +IFG+ N+++V+P MRRHAK +NF I+YGIS + LA L I R EA ++I YF Sbjct: 244 HAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYF 303 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 ++P I +Y++ R+ GY ETI RR +I++ +IR+ ER AIN+PIQGSA Sbjct: 304 EQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSA 363 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI + LE KL TKM+LQIHDEL+F+VP EE+ ++ M++A Sbjct: 364 ADIIKIAMIKMQSELEQRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKIMQQAA---- 419 Query: 957 NLRVPLKVNIKVSNNWQE 974 L VPL + +NW E Sbjct: 420 QLDVPLIADANWGHNWYE 437 >gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502] gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397] gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall] gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502] gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397] gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall] Length = 875 Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 202/539 (37%), Positives = 319/539 (59%), Gaps = 35/539 (6%) Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500 KNT ++ + K+ FE++ KI ++ K + +L + GI G + DI L +Y++D R Sbjct: 364 KNT-KEQFIEVCKEIFESKEIKKITYDAKNPRTILRKLGIEFNGIKFDINLAAYLIDPVR 422 Query: 501 SSHDIASIAQKWL--SYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 ++I+S+A ++L + R+ E LK I+ N++ L+ +L Sbjct: 423 KEYEISSLASEYLFKNINREDEFLK--------------------IKEVNIMPNLYKVLE 462 Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617 K+ + + + ++++P+ + +S ME G ++D+D+L Q+ + + S + IY +S Sbjct: 463 EKIKEQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMS 522 Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677 E+FN++SPKQLG ILF KL P KTKTG + T A+ L+++ +PII I +RQL Sbjct: 523 EEEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQL 580 Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 +KI STY + L I++ ++H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ F Sbjct: 581 TKIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVF 639 Query: 738 ISPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 I P T ++SADYSQIELR+LAHI+ + F DIH A+E+F V IE+V+P Sbjct: 640 I-PNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTP 698 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 MR +AK +NF I+YGI F L+ L I R EA YI Y R+P + Y+E + Sbjct: 699 LMRGNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAIE 758 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GYV TI RR + E+ S ++ ER A+N+PIQGSAADI + AM++VH+ L++ Sbjct: 759 KGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHRKLKEDN 818 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++LQ+HDEL+ V ++E+ ++ ME+ + L+V L V+I + NNW E Sbjct: 819 FKSSIILQVHDELILNVHKDELEKIKALVKKEMEQV----LELKVGLDVDINIGNNWYE 873 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 121/297 (40%), Positives = 176/297 (59%), Gaps = 13/297 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L ++D +S + RAFYA P L +G+ NAI GF NML K+ KE I Sbjct: 1 MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEINPD 53 Query: 61 FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + V FD A TFR+E Y DYKA R K+PE L Q P+V+ A I EI GFEADD Sbjct: 54 YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIVKELLSALAINIFEIDGFEADD 113 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175 +I T + AE++G V I++ DKD +QL + + T K +E D +++++G+ Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDNVKVVITKKGITEKEIYDKNRMVEEFGVT 173 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++ L GD+ DNIPG+PGIG KTA L++EY ++E +L N IK KK +EN+ E Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVLENIENIKGKKLKENLHE 233 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATT 291 Y E A S+KL + +VPI + LE + E+ + ++ + LEF L+N+V + Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVREMFERLEFKSLMNKVGKS 290 >gi|282916950|ref|ZP_06324708.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139] gi|282319437|gb|EFB49789.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139] Length = 876 Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 E++S+L EN + K+ ++ K + HR GI ++ DIML SY++D R+ D+ Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412 Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+ + S+ + ++ K +K +P D + + V I +P + Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462 Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +K L Y + L+ P+ ++S+ME GI D L+++ EI + L L NI+D Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDA 522 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +GE FN++SPKQLG +LF L+ P KTKTG + T LEQ+ G++PII ILE+RQ Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAIDVLEQLQ-GEHPIIDYILEYRQ 580 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 LSK++STY + L I+ QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+A Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639 Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 F PT K ++SADYSQIELR+LAHI + + + F N DIH A ++FGV ++V Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 MRR AK +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET+ RR + +I S ++R ER A+N PIQGSAADI + AM+ + +++ Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 K+LLQ+HDEL+FEVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L+ + + + A Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASGEDA 295 Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333 IE +++ T K AI E+D R+ +K S F+ Sbjct: 296 IEKTFEIETSFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341 >gi|298694960|gb|ADI98182.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED133] Length = 876 Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 E++S+L EN + K+ ++ K + HR GI ++ DIML SY++D R+ D+ Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412 Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+ + S+ + ++ K +K +P D + + V I +P + Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462 Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +K L Y + L+ P+ ++S+ME GI D L+++ EI + L L NI+D Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDA 522 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +GE FN++SPKQLG +LF L+ P KTKTG + T LEQ+ G++PII ILE+RQ Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 LSK++STY + L I+ QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+A Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639 Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 F PT K ++SADYSQIELR+LAHI + + + F N DIH A ++FGV ++V Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 MRR AK +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET+ RR + +I S ++R ER A+N PIQGSAADI + AM+ + +++ Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 K+LLQ+HDEL+FEVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 122/346 (35%), Positives = 182/346 (52%), Gaps = 23/346 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L+ + + + A Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDA 295 Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333 IE +++ T K I E+D R+ +K S F+ Sbjct: 296 IEKTFEIETSFDNVDFTSLKEAVIHFELDGGNYLRNNILKFSLFTG 341 >gi|253734526|ref|ZP_04868691.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130] gi|253727467|gb|EES96196.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130] Length = 876 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 E++S+L EN + K+ ++ K + HR GI ++ DIML SY++D R+ D+ Sbjct: 357 ELVSWL----ENPNSKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412 Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+ + S+ + ++ K +K +P D + + V I +P + Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462 Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +K L Y + L+ P+ ++S+ME GI D L+++ EI + L L NI+D Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDA 522 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +GE FN++SPKQLG +LF L+ P KTKTG + T LEQ+ G++PII ILE+RQ Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 LSK++STY + L I+ QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+A Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639 Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 F PT K ++SADYSQIELR+LAHI + + + F N DIH A ++FGV ++V Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 MRR AK +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET+ RR + +I S ++R ER A+N PIQGSAADI + AM+ + +++ Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 K+LLQ+HDEL+FEVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 121/346 (34%), Positives = 184/346 (53%), Gaps = 23/346 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+ GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADIAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS-FLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE ++ + + + K LEF +L+ + + + A Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKNELFKKLEFKQLLADIDQSASVEDA 295 Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333 IE +I+ T K AI E+D R+ +K S F+ Sbjct: 296 IEKTFEIETSFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341 >gi|257425805|ref|ZP_05602229.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053] gi|257428471|ref|ZP_05604869.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322] gi|257431105|ref|ZP_05607482.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397] gi|257433788|ref|ZP_05610146.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410] gi|257436704|ref|ZP_05612748.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876] gi|282904261|ref|ZP_06312149.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160] gi|282906086|ref|ZP_06313941.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260] gi|282914486|ref|ZP_06322272.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899] gi|282924832|ref|ZP_06332498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101] gi|283958441|ref|ZP_06375892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97] gi|293503564|ref|ZP_06667411.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424] gi|293510579|ref|ZP_06669284.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809] gi|293537121|ref|ZP_06671801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015] gi|295428261|ref|ZP_06820890.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590776|ref|ZP_06949414.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus MN8] gi|257271499|gb|EEV03645.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053] gi|257275312|gb|EEV06799.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322] gi|257278053|gb|EEV08701.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397] gi|257281881|gb|EEV12018.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410] gi|257284055|gb|EEV14178.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876] gi|282313198|gb|EFB43594.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101] gi|282321667|gb|EFB51992.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899] gi|282331378|gb|EFB60892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260] gi|282595879|gb|EFC00843.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160] gi|283790590|gb|EFC29407.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97] gi|290919966|gb|EFD97034.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015] gi|291095230|gb|EFE25495.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424] gi|291466470|gb|EFF08991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809] gi|295127661|gb|EFG57298.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575662|gb|EFH94378.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus MN8] gi|315195594|gb|EFU25981.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS00] Length = 876 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 230/642 (35%), Positives = 345/642 (53%), Gaps = 69/642 (10%) Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-----TLDQKDDTSFKVE 425 ++ +D QQ +K+E FK + +D S AI + + D D TS K Sbjct: 260 LMTHQDEQQ--EKIELFKKLEFKQLLADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEA 317 Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSY---------------------LKKFFENEHFLK 464 TI +L G N L IL + L + EN + K Sbjct: 318 TIHFELD--------GGNYLRNNILKFSLFTGEKHIVINADDIINYAELVSWLENPNTKK 369 Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKEIL- 521 + ++ K + HR GI ++ DIML SY++D R+ D+ S+ + S+ + ++ Sbjct: 370 VVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSI 429 Query: 522 --KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LD 573 K +K +P D + + V I +P + +K L Y + L+ Sbjct: 430 YGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM--DKQLEEYNQVELLADLE 479 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 P+ ++S+ME GI D L+++ EI + L L NI+D +GE FN++SPKQLG +L Sbjct: 480 LPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVL 539 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 F L+ P KTKTG + T LEQ+ G++PII ILE+RQLSK++STY + L I+ Sbjct: 540 FETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQLSKLQSTYVEGLQKVIS 597 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADY 750 QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+AF PT K ++SADY Sbjct: 598 D-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAF--KPTSKDSVILSADY 654 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELR+LAHI + + + F N DIH A ++FGV ++V MRR AK +NF I+Y Sbjct: 655 SQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVY 714 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 GIS + L+ L I R +A +I Y FPG+ +Y+ + G+VET+ RR + Sbjct: 715 GISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIP 774 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 +I S ++R ER A+N PIQGSAADI + AM+ + +++ K+LLQ+HDEL+F Sbjct: 775 DITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIF 834 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 835 EVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 120/341 (35%), Positives = 178/341 (52%), Gaps = 31/341 (9%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L+ Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLL------------ 283 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338 DI+ + + AIE + +T+ F+SL + T Sbjct: 284 ------ADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEAT 318 >gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7] gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7] Length = 886 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 204/493 (41%), Positives = 304/493 (61%), Gaps = 15/493 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543 DI+L SY+L++ +S D++ +A + + + E + K K +IP DK +H Sbjct: 401 DILLASYLLNTKDNSKDLSEVAMEHDYYDVSSDESVYGKGAKIAIPEDK---KVTYDHVA 457 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 I L L L +++ ++ P+ V+++ME+TG++++ L ++ E + Sbjct: 458 RKIKAIRILSKQLSDNLEKNVQTKLFDEMELPLSIVLAEMELTGVKVNDKRLMEMKEEFA 517 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 L +E+ +Y+L+GEKFNL+SPKQLG ILF K+ +P KTKTG + T LEQ+ Sbjct: 518 IRLNDIEQRVYELAGEKFNLNSPKQLGVILFEKMGYPVVKKTKTG-YSTAVDVLEQLKE- 575 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 PI+++ILE+RQ++KI+STY + L I+K T ++HT Y TGRL+S++PNLQNI Sbjct: 576 QAPIVEHILEYRQIAKIQSTYIEGLLKVIDKETGKIHTRYMQTIAQTGRLSSVDPNLQNI 635 Query: 724 PIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 PI+ + G+KIR+AF+ S K+ ++DYSQIELR+L H++ L + F DIH A Sbjct: 636 PIRLEEGRKIRQAFVPSHEGWKIFASDYSQIELRVLGHVSNDKLLKEAFIEGQDIHSSTA 695 Query: 783 AEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 +FG++ E+VS +MRR AK +NF I+YGIS + L+ L I R EA +I YF ++PG Sbjct: 696 MRVFGISSPEEVSSEMRRRAKAVNFGIVYGISDYGLSQNLGISRKEAQRFIDTYFEKYPG 755 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+E + G+VET+F RR + EINS ++R+ ER AIN PIQGSAADI + Sbjct: 756 VKTYMEDIVREAKDKGFVETLFHRRRYLPEINSRNFNLRSFAERTAINTPIQGSAADIIK 815 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI + + L++ KL MLLQ+HDEL+FE PEEEI ++V ME A + L VP Sbjct: 816 IAMIKMDERLKESKLKATMLLQVHDELIFEAPEEEIEELKALVVEVMEGA----VELSVP 871 Query: 962 LKVNIKVSNNWQE 974 LKV+ +W E Sbjct: 872 LKVDSNSGKSWYE 884 Score = 191 bits (484), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 116/306 (37%), Positives = 172/306 (56%), Gaps = 12/306 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYA--TPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + L L+DG+S YRAF+A + L K+ +GL NA+ GF NM+ +L KE+ Sbjct: 1 MNERKKLVLIDGNSVAYRAFFALHSQLERMKNKNGLHTNALYGFHNMIDSVLT---KEN- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 SH V FD TFR+ + DYKA R K P Q+P +R FGI E++ FEA Sbjct: 57 PSHVLVAFDAGNTTFRHSFFDDYKAGRSKTPGEFSEQMPYLRELLDGFGIKHYELENFEA 116 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T + + V +IS D+DL QL + TVK ++ E + ++ G Sbjct: 117 DDIIGTLATQVDPTIYDVVVISGDRDLTQLAKENVRVDITVKGVSELKEYTPESIHEEMG 176 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P +++ ++ L GD+ DNIPG+ IG KTA LL+EYG++E I N +K+ K +EN+ Sbjct: 177 ISPLQIIDMKGLAGDASDNIPGVTKIGEKTALKLLKEYGSVEGIYENIDSLKKSKMKENL 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT-Y 292 + ETA LS+KL + TD PI + ++ L N +LI+F K ++F ++++ T Y Sbjct: 237 INEKETAFLSKKLATIDTDSPIKVGIDDLNFSGPNMEKLIAFYKEMDFNSHLSKLDTAEY 296 Query: 293 DCDAAN 298 D + N Sbjct: 297 DAEQNN 302 >gi|21283362|ref|NP_646450.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2] gi|49486516|ref|YP_043737.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476] gi|57650561|ref|YP_186574.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL] gi|87161466|ref|YP_494331.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195497|ref|YP_500301.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221795|ref|YP_001332617.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman] gi|161509904|ref|YP_001575563.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142560|ref|ZP_03567053.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253732341|ref|ZP_04866506.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|258451796|ref|ZP_05699818.1| DNA polymerase I [Staphylococcus aureus A5948] gi|262052261|ref|ZP_06024466.1| DNA polymerase I [Staphylococcus aureus 930918-3] gi|282920230|ref|ZP_06327955.1| DNA polymerase I [Staphylococcus aureus A9765] gi|284024738|ref|ZP_06379136.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp. aureus 132] gi|294848711|ref|ZP_06789457.1| DNA polymerase I [Staphylococcus aureus A9754] gi|297207597|ref|ZP_06924032.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911679|ref|ZP_07129123.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH70] gi|304380719|ref|ZP_07363388.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|6110605|gb|AAF03894.1|AF193842_1 DNA polymerase I [Staphylococcus aureus] gi|21204802|dbj|BAB95498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2] gi|49244959|emb|CAG43420.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476] gi|57284747|gb|AAW36841.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL] gi|87127440|gb|ABD21954.1| DNA polymerase I superfamily [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203055|gb|ABD30865.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374595|dbj|BAF67855.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman] gi|160368713|gb|ABX29684.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723863|gb|EES92592.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257860508|gb|EEV83334.1| DNA polymerase I [Staphylococcus aureus A5948] gi|259159862|gb|EEW44901.1| DNA polymerase I [Staphylococcus aureus 930918-3] gi|269941170|emb|CBI49557.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TW20] gi|282594578|gb|EFB99563.1| DNA polymerase I [Staphylococcus aureus A9765] gi|294824737|gb|EFG41160.1| DNA polymerase I [Staphylococcus aureus A9754] gi|296887614|gb|EFH26512.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887100|gb|EFK82301.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH70] gi|302751516|gb|ADL65693.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340718|gb|EFM06649.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198613|gb|EFU28941.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus CGS01] gi|320140432|gb|EFW32286.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143970|gb|EFW35739.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314362|gb|AEB88775.1| DNA polymerase I [Staphylococcus aureus subsp. aureus T0131] gi|329728334|gb|EGG64771.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21189] Length = 876 Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 E++S+L EN + K+ ++ K + HR GI ++ DIML SY++D R+ D+ Sbjct: 357 ELVSWL----ENPNSKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412 Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+ + S+ + ++ K +K +P D + + V I +P + Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462 Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +K L Y + L+ P+ ++S+ME GI D L+++ EI + L L NI+D Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDA 522 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +GE FN++SPKQLG +LF L+ P KTKTG + T LEQ+ G++PII ILE+RQ Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 LSK++STY + L I+ QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+A Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639 Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 F PT K ++SADYSQIELR+LAHI + + + F N DIH A ++FGV ++V Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 MRR AK +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET+ RR + +I S ++R ER A+N PIQGSAADI + AM+ + +++ Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 K+LLQ+HDEL+FEVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L+ + + + A Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDA 295 Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333 IE +I+ T K AI E+D R+ +K S F+ Sbjct: 296 IEKTFEIETSFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341 >gi|289550552|ref|YP_003471456.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01] gi|289180084|gb|ADC87329.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01] Length = 877 Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 204/528 (38%), Positives = 311/528 (58%), Gaps = 21/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L ++ EN+H KI + K + HR I+++ + D+ML SY++D R+ D+ S+ Sbjct: 359 LIEWLENDHNNKIVFDAKKTYVAAHRLEINLQHIDFDVMLASYIIDPSRTIEDVQSVVSY 418 Query: 512 W-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + ++ + +I K +K +P+D + ++ H I L+ L + Sbjct: 419 YNQNFVKSDIAVYGKGKKRQVPLDDV----LEVHIAAIMQAIYNCKPLMSDILSDHNQMD 474 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + L+ P+ +++ ME TGI D + LK++ E+ + L +L IY+ +GE FN++SPK Sbjct: 475 LLNNLELPLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAAGESFNINSPK 534 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF LK P KTKTG + T LEQ+ G +PII ILE+RQLSK++STY + Sbjct: 535 QLGIVLFETLKLPIIKKTKTG-YSTAVDVLEQLQ-GKHPIIDYILEYRQLSKLQSTYVEG 592 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L I+ QR+HT ++ TGRL+S++PNLQNIPI+ + G+KIR+AF PT Sbjct: 593 LQKVISD-DQRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAF--KPTSDDYV 649 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 ++SADYSQIELR+LAH+ + L + F + DIH A ++FGV ++V+ MRR AK + Sbjct: 650 ILSADYSQIELRVLAHMTQDESLKEAFIHGDDIHAATAMKVFGVEKDQVNDLMRRQAKAV 709 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ + NGYVET+ Sbjct: 710 NFGIVYGISDYGLSQNLGITRKKAKAFIDDYLASFPGVKQYMTDIVKDAKANGYVETLLH 769 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I S ++R+ ER A+N PIQGSAADI + AM+ K++ + K+LLQ+ Sbjct: 770 RRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVQFDKNVRETNYHAKLLLQV 829 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FEVP+ E+ S+ + M+ A + L VPL V+ W Sbjct: 830 HDELIFEVPKSEVQDFSEFVEEIMDNA----LTLAVPLLVDSSYGATW 873 Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 108/292 (36%), Positives = 165/292 (56%), Gaps = 13/292 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S +RAFYA PLLS K G+ NAI GF +L K+L KE +HF V FD Sbjct: 4 LVLIDGNSLSFRAFYALPLLSNKA-GIHTNAIYGFAMLLEKIL----KEEQPNHFLVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E Y +YK R P L Q P +R A+ I E++ +EADDII T + Sbjct: 59 AGKTTFRHEKYSEYKGGRQSTPPELSEQFPYIRQLLDAYHIKYYELENYEADDIIGTLSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEKMV 180 AE G II+ D+DL QL + +Y T K+ D++H + +K+ G+ P++++ Sbjct: 119 QAEASGLETIIITGDRDLTQLATDHVTIYYT-KKGVTDVDHYTPEFIAEKYNGLLPKQII 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++ L GD+ DNIPG+ G+G KTA LL ++ ++E + + + KK +EN+ A Sbjct: 178 DMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFHSVEGVYNHLDEVSGKKLKENLENSKADA 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPR-LISFLKALEFTKLINRVATT 291 +S+ L + D PI + L+ I+ D N + I + LEF +L+N + ++ Sbjct: 238 FMSKDLATINCDSPIKVNLKDTIMGDLNDNKDKIELFQKLEFKQLLNDIDSS 289 >gi|160880934|ref|YP_001559902.1| DNA polymerase I [Clostridium phytofermentans ISDg] gi|160429600|gb|ABX43163.1| DNA polymerase I [Clostridium phytofermentans ISDg] Length = 994 Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 187/490 (38%), Positives = 307/490 (62%), Gaps = 11/490 (2%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIE 544 D+ + Y+L+ S+++ +IA+K+L + KE+ S ++ + + Q ++ A Sbjct: 511 DVTIAGYLLEPDASTYEYQTIAEKYLELDLPSEKEVF-SGQTYASLSLLDQDQYKKAACY 569 Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 S V ++ +L L LL ++ ++ P++ + ME GI++D + LK S ++ Sbjct: 570 ESYVAHHIYPVLLKLLSERGLLPLFAGIEMPLVYTLYDMEQRGIRVDTNGLKDYSDQLGV 629 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664 +++ LE+ I++L G +FN++SPKQLG+ILF +L G KTKTG + T+A+ LE+++ + Sbjct: 630 SIVELEKQIFELVGVEFNINSPKQLGEILFQRLGLSYGKKTKTG-YSTSAEVLEKLSS-E 687 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 +P+IK IL++RQL+K+KSTYAD L +++ + R+H ++ TGRL+S EPNLQNIP Sbjct: 688 HPVIKLILQYRQLTKLKSTYADGLVSYV-EGDGRIHGTFNQTIAATGRLSSTEPNLQNIP 746 Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 I+ +LG+KIR+ FI + ADYSQIELR+LAH++ L + + + DIHR+ A+E Sbjct: 747 IRMELGRKIRKVFIPEDGYLFLDADYSQIELRLLAHMSNDARLIEAYRQAQDIHRLTASE 806 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +F ++V+ R +AK +NF I+YGIS F L L I R EA +YI +YF +PG+ Sbjct: 807 VFHTPFDEVTSAQRSNAKAVNFGIVYGISSFSLGQDLDITRKEAEEYINKYFMTYPGVKT 866 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 Y++ ++ G V+T++GR + + R+ ER A+N+PIQG+AADI + AM Sbjct: 867 YLDGLIEEGKETGVVKTLYGRIRPVPNLTNSNFMKRSAEERIAMNSPIQGTAADIMKLAM 926 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 I V++ L++ KL +++LLQIHDEL+ E E E+ ++I+ M++A +L VPL+V Sbjct: 927 IHVNQVLKERKLKSRLLLQIHDELLVETHESEVEEVAKIMKEEMQQAA----SLSVPLEV 982 Query: 965 NIKVSNNWQE 974 + NNW E Sbjct: 983 EVANGNNWYE 992 Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 82/282 (29%), Positives = 135/282 (47%), Gaps = 48/282 (17%) Query: 5 NHLFLVDGSSFIYRAFYAT------------------PLLSRKHDGLPVNAIAGFCNMLW 46 ++L ++DGSS + F+ P + + G+ NA+ GF +L Sbjct: 19 DYLLVIDGSSLLSTQFFGNLPKEIMFAKTMEEKEKYFPKIMQTATGVYTNAVYGFLRVLL 78 Query: 47 KLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFG 106 K++++ + ++ AV +D TFR EIYPDYK NR + E L Q L + + G Sbjct: 79 KIIKDQK----PTYLAVAWDISRNTFRREIYPDYKGNRGETLEPLKDQFKLCQHVLKEMG 134 Query: 107 IPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKE--- 160 I + +EADD T E+E + +++ D D +QL++ T L+ T K+ Sbjct: 135 IVQFMDERYEADDFSGTLCQKFEEE-VPIRVMTKDNDYLQLITERTNLWLIHSTAKKTDE 193 Query: 161 --EKIDI----------------EHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYK 202 EK + E V K++GI P + L+ + GDS DNI G+PG+G Sbjct: 194 LYEKYGLSKKELNVPDRTFLFTPELVEKEFGIEPSSVPSLKGIGGDSSDNIKGVPGVGEA 253 Query: 203 TAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 TA L++EY +EN+ + + + ++E I EY +T + R Sbjct: 254 TAVALIKEYKTVENLYEILNNLDETGKKE-INEYWKTLGIKR 294 >gi|49483932|ref|YP_041156.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252] gi|49242061|emb|CAG40760.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252] Length = 876 Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 230/642 (35%), Positives = 345/642 (53%), Gaps = 69/642 (10%) Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-----TLDQKDDTSFKVE 425 ++ +D QQ +K+E FK + +D S AI + + D D TS K Sbjct: 260 LMTHQDEQQ--EKIELFKKLEFKQLLADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEA 317 Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSY---------------------LKKFFENEHFLK 464 TI +L G N L IL + L + EN + K Sbjct: 318 TIHFELD--------GGNYLRNNILKFSLFTGEKHIVINADDIINYAELVSWLENPNTKK 369 Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKEIL- 521 + ++ K + HR GI ++ DIML SY++D R+ D+ S+ + S+ + ++ Sbjct: 370 VVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSI 429 Query: 522 --KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LD 573 K +K +P D + + V I +P + +K L Y + L+ Sbjct: 430 YGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM--DKQLEEYNQVELLADLE 479 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 P+ ++S+ME GI D L+++ EI + L L NI+D +GE FN++SPKQLG +L Sbjct: 480 LPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVL 539 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 F L+ P KTKTG + T LEQ+ G++PII ILE+RQLSK++STY + L I+ Sbjct: 540 FETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQLSKLQSTYVEGLQKVIS 597 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADY 750 QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+AF PT K ++SADY Sbjct: 598 D-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAF--KPTSKDSVILSADY 654 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELR+LAHI + + + F N DIH A ++FGV ++V MRR AK +NF I+Y Sbjct: 655 SQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVY 714 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 GIS + L+ L I R +A +I Y FPG+ +Y+ + G+VET+ RR + Sbjct: 715 GISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIP 774 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 +I S ++R ER A+N PIQGSAADI + AM+ + +++ K+LLQ+HDEL+F Sbjct: 775 DITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIF 834 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 835 EVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 120/341 (35%), Positives = 178/341 (52%), Gaps = 31/341 (9%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L+ Sbjct: 236 NALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLL------------ 283 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338 DI+ + + AIE + +T+ F+SL + T Sbjct: 284 ------ADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEAT 318 >gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119] gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119] Length = 878 Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 204/526 (38%), Positives = 315/526 (59%), Gaps = 17/526 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L K+ ENE+ K+ ++ K ++ HR I+++ D ML SY+ D R+ D+ S+ Sbjct: 360 LIKWLENENSKKVVYDAKKTFVIAHRLNINIQNIVFDAMLASYIFDPSRTIDDVYSVVTN 419 Query: 512 W-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + +Y ++++ K +K +P +I ++ H + I + L+ +L + ++ Sbjct: 420 YHQTYVKEDVSIYGKGKKRHVPDTEILNT----HIASITKSIDAVKPLMEKELESHQQMN 475 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + + L+ P+ ++S+ME GI D + L+ + E+ + L L + I+D +GE+FN++SPK Sbjct: 476 LLKDLELPLARILSKMEEIGIYTDVNDLQHMQQELQEKLELLVQRIHDAAGEEFNINSPK 535 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF LK P KTKTG + T LEQ+ ++PII +ILE+RQL+K++STY + Sbjct: 536 QLGVVLFETLKLPVIKKTKTG-YSTAVDVLEQLQ-NEHPIINDILEYRQLAKLQSTYVEG 593 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L I+ +R+HT ++ TGRL+S++PNLQNIPI+ + G+KIR+AF S ++ Sbjct: 594 LQKVIS-NDKRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPSSEDSVIL 652 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 SADYSQIELR+LAHI + L + F + DIH A ++FGV E+V+ MRR AK +NF Sbjct: 653 SADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAKAVNF 712 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YGIS + L+ L I R EA +I Y FPG+ +Y+ + NGYVET+ RR Sbjct: 713 GIVYGISDYGLSQSLNITRKEAKIFIDDYLASFPGVKQYMSDIVKDAKANGYVETLLHRR 772 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + +I S ++R ER A+N PIQGSAADI + AM+ K ++ K+LLQ+HD Sbjct: 773 RYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVEFDKQVQHTSYKAKLLLQVHD 832 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EL+FEVP+ E+ S + ME A ++L VPLKV+ W Sbjct: 833 ELIFEVPKSEVEEFSLFVEDIMEHA----LDLDVPLKVDSNYGPTW 874 Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 158/288 (54%), Gaps = 13/288 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NAI GF +L K++ +E +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAILGFAKLLEKII----REEQPTHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R K P L Q P +R A+ I E++ +EADDII T Sbjct: 57 FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKHYELENYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178 + A++ F I++ D+DL QL + +Y T K+ D++H ++ G+ P + Sbjct: 117 SKEADQNDFETIIVTGDRDLTQLATQNVTIYYT-KKGVTDVDHYTPEFIAEKYNGLKPIQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GDS DNIPG+ G+G KTA LL ++ ++E + N ++ KK +E + E Sbjct: 176 IIDMKGLMGDSSDNIPGVAGVGEKTAIKLLNQFDSVEGVYENIDKVSGKKLKEKLELSHE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCN-GPRLISFLKALEFTKLI 285 A +S++L + PI + L L D N I K LEF +L+ Sbjct: 236 DALMSKELATINRYSPIEVTLNDTKLSDINDNHEKIELFKKLEFKQLL 283 >gi|313892366|ref|ZP_07825958.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] gi|313119225|gb|EFR42425.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] Length = 857 Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 197/490 (40%), Positives = 307/490 (62%), Gaps = 20/490 (4%) Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545 F D+ L++Y+LD +++ + + + + + SI ID+ ++ +++ Sbjct: 385 FYDVTLIAYLLDPTHVTYNRSYVGELF-----------KVPSIYIDE--NASFEQNGNMI 431 Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 ++ +L L+ L+ + +++ +++P+I+V+++ME GI ID++ K+V + + Sbjct: 432 ADFLLALYTSSYELLVKNDIEKLFKEVEQPLIEVLAEMEKNGISIDEENWKKVRKSMKEK 491 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 L IY +GE+FN++SPKQL ILF K+ P+G KTKTG + T A LE + D Sbjct: 492 EEKLLLEIYREAGEEFNVNSPKQLSHILFDKMGMPTGKKTKTG-YSTAADVLESLAI-DY 549 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 P +KNILE+R L+K+ STY D++P + K T+RVHT ++ T TGRL+S +PNLQNIP+ Sbjct: 550 PFVKNILEYRTLAKLISTYLDAIPLLVRKETKRVHTSFNQMVTATGRLSSSDPNLQNIPV 609 Query: 726 KTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 +T+ G+ IR F+ IS+DYSQ+ELR+LAH++ L + FEN DIHR A+E Sbjct: 610 RTEEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTASE 669 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +FGV E+V+ + R HAK +NF IIYGIS F L+ QL I R +A +YIK Y R+PGIHE Sbjct: 670 VFGVPFEEVTSEQRSHAKAVNFGIIYGISDFGLSKQLGISRKKADEYIKTYLKRYPGIHE 729 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 +++K R+ G V+T+FGR +INS R+ ER A+N PIQGSAADI + AM Sbjct: 730 FMKKMTEEARKTGKVKTLFGRYRDLPDINSKNFQRRSFAERTAMNTPIQGSAADIMKIAM 789 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 I V++ ++ K +++LLQ+HDELV E +EE+ S+++ +ME ++L+V L Sbjct: 790 IQVYEKMKKGKYKSRILLQVHDELVVEAVKEEVEEISKLLKETMESV----VSLKVKLVA 845 Query: 965 NIKVSNNWQE 974 ++ V NW E Sbjct: 846 DVHVGKNWAE 855 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 111/263 (42%), Positives = 154/263 (58%), Gaps = 12/263 (4%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + L ++DGSS YRAFYA PLLS H+G+ NA+ GF ML L +N E IA V Sbjct: 2 DKKLVIIDGSSLFYRAFYALPLLS--HNGIYTNAVYGFLRMLAGLYRNLDPEYIA----V 55 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRNEIY DYKA R P L+PQ L++ + G+ E+ G+E DDI+ T Sbjct: 56 AFDKDRYTFRNEIYKDYKATRKSAPAELVPQFKLIKDLLRVMGVAVYEMAGYEGDDILGT 115 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 + K+ V I++ D+D +QL S ++ T K ++ V++K+GI P ++ Sbjct: 116 LAF-KYKDELPVLIVTGDRDSLQLSSEKVTVFLTQKGISNMAEMTPSAVVQKYGIKPSQI 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DNIPG+ GIG KTA LLQ+Y NLENI N IK ++ + +L E Sbjct: 175 IDMKALMGDTSDNIPGVKGIGEKTAVKLLQKYENLENIYKNIEEIKGAQKTK-LLSGKED 233 Query: 240 ARLSRKLVMLRTDVPITIPLEHL 262 A LSR L +R D+PI LE + Sbjct: 234 AYLSRNLAKIRIDIPINATLEEM 256 >gi|15924680|ref|NP_372214.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50] gi|15927268|ref|NP_374801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315] gi|148268170|ref|YP_001247113.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9] gi|150394237|ref|YP_001316912.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1] gi|156980007|ref|YP_001442266.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3] gi|253317166|ref|ZP_04840379.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006474|ref|ZP_05145075.2| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794075|ref|ZP_05643054.1| DNA polymerase I [Staphylococcus aureus A9781] gi|258415779|ref|ZP_05682050.1| DNA polymerase I [Staphylococcus aureus A9763] gi|258421984|ref|ZP_05684904.1| DNA polymerase I [Staphylococcus aureus A9719] gi|258438258|ref|ZP_05689542.1| DNA polymerase I [Staphylococcus aureus A9299] gi|258443716|ref|ZP_05692055.1| DNA polymerase I [Staphylococcus aureus A8115] gi|258445927|ref|ZP_05694103.1| DNA polymerase I [Staphylococcus aureus A6300] gi|258448392|ref|ZP_05696509.1| DNA polymerase I [Staphylococcus aureus A6224] gi|258454127|ref|ZP_05702098.1| DNA polymerase I [Staphylococcus aureus A5937] gi|269203308|ref|YP_003282577.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98] gi|282893185|ref|ZP_06301419.1| DNA polymerase I [Staphylococcus aureus A8117] gi|295406000|ref|ZP_06815808.1| DNA polymerase I [Staphylococcus aureus A8819] gi|296274883|ref|ZP_06857390.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MR1] gi|297245074|ref|ZP_06928951.1| DNA polymerase I [Staphylococcus aureus A8796] gi|13701486|dbj|BAB42780.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315] gi|14247462|dbj|BAB57852.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50] gi|147741239|gb|ABQ49537.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9] gi|149946689|gb|ABR52625.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1] gi|156722142|dbj|BAF78559.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3] gi|257788047|gb|EEV26387.1| DNA polymerase I [Staphylococcus aureus A9781] gi|257839372|gb|EEV63845.1| DNA polymerase I [Staphylococcus aureus A9763] gi|257842028|gb|EEV66457.1| DNA polymerase I [Staphylococcus aureus A9719] gi|257848302|gb|EEV72293.1| DNA polymerase I [Staphylococcus aureus A9299] gi|257851122|gb|EEV75065.1| DNA polymerase I [Staphylococcus aureus A8115] gi|257855169|gb|EEV78108.1| DNA polymerase I [Staphylococcus aureus A6300] gi|257858360|gb|EEV81245.1| DNA polymerase I [Staphylococcus aureus A6224] gi|257863579|gb|EEV86336.1| DNA polymerase I [Staphylococcus aureus A5937] gi|262075598|gb|ACY11571.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98] gi|282764503|gb|EFC04629.1| DNA polymerase I [Staphylococcus aureus A8117] gi|285817373|gb|ADC37860.1| DNA polymerase I [Staphylococcus aureus 04-02981] gi|294968997|gb|EFG45018.1| DNA polymerase I [Staphylococcus aureus A8819] gi|297178154|gb|EFH37402.1| DNA polymerase I [Staphylococcus aureus A8796] gi|312830068|emb|CBX34910.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130676|gb|EFT86662.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS03] gi|329727254|gb|EGG63710.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21172] Length = 876 Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 E++S+L EN + K+ ++ K + HR GI ++ DIML SY++D R+ D+ Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412 Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+ + S+ + ++ K +K +P D + + V I +P + Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462 Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +K L Y + L+ P+ ++S+ME GI D L+++ EI + L L NI+D Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDA 522 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +GE FN++SPKQLG +LF L+ P KTKTG + T LEQ+ G++PII ILE+RQ Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 LSK++STY + L I+ QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+A Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639 Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 F PT K ++SADYSQIELR+LAHI + + + F N DIH A ++FGV ++V Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 MRR AK +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET+ RR + +I S ++R ER A+N PIQGSAADI + AM+ + +++ Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 K+LLQ+HDEL+FEVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 184/346 (53%), Gaps = 23/346 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L++ + + + A Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLSDIDQSASVEDA 295 Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333 IE +I+ T K AI E+D R+ +K S F+ Sbjct: 296 IEKTFEIETSFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341 >gi|282927820|ref|ZP_06335431.1| DNA polymerase I [Staphylococcus aureus A10102] gi|282590330|gb|EFB95409.1| DNA polymerase I [Staphylococcus aureus A10102] Length = 876 Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 E++S+L EN + K+ ++ K + HR GI ++ DIML SY++D R+ D+ Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412 Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+ + S+ + ++ K +K +P D + + V I +P + Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462 Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +K L Y + L+ P+ ++S+ME GI D L+++ EI + L L NI+D Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDA 522 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +GE FN++SPKQLG +LF L+ P KTKTG + T LEQ+ G++PII ILE+RQ Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 LSK++STY + L I+ QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+A Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639 Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 F PT K ++SADYSQIELR+LAHI + + + F N DIH A ++FGV ++V Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 MRR AK +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET+ RR + +I S ++R ER A+N PIQGSAADI + AM+ + +++ Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 K+LLQ+HDEL+FEVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 125/346 (36%), Positives = 184/346 (53%), Gaps = 23/346 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E I + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGIYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L++ + + + A Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLSDIDQSASVEDA 295 Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333 IE +I+ T K AI E+D R+ +K S F+ Sbjct: 296 IEKTFEIETSFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341 >gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80] gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80] Length = 878 Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 204/526 (38%), Positives = 316/526 (60%), Gaps = 17/526 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L K+ ENE+ K+ ++ K ++ HR I+++ D ML SY++D R+ D+ S+ Sbjct: 360 LIKWLENENSKKVVYDAKKTFVIAHRLNINIQNIVFDAMLASYIIDPSRTIDDVYSVVTN 419 Query: 512 W-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + +Y ++++ K +K +P +I ++ H + I + L+ +L + ++ Sbjct: 420 YHQTYVKEDVSIYGKGKKRHVPDTEILNT----HIASITKSIDAVKPLMEKELESHQQMN 475 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + + L+ P+ ++S+ME GI D + L+ + E+ + L L + I+D +GE+FN++SPK Sbjct: 476 LLKDLELPLARILSKMEEIGIYTDVNDLQHMQQELQEKLELLVQRIHDAAGEEFNINSPK 535 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF LK P KTKTG + T LEQ+ ++PII +ILE+RQL+K++STY + Sbjct: 536 QLGVVLFETLKLPVIKKTKTG-YSTAVDVLEQLQ-NEHPIINDILEYRQLAKLQSTYVEG 593 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L I+ +R+HT ++ TGRL+S++PNLQNIPI+ + G+KIR+AF S ++ Sbjct: 594 LQKVIS-NDKRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPSSEDSVIL 652 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 SADYSQIELR+LAHI + L + F + DIH A ++FGV E+V+ MRR AK +NF Sbjct: 653 SADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAKAVNF 712 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YGIS + L+ L I R EA +I Y FPG+ +Y+ + NGYVET+ RR Sbjct: 713 GIVYGISDYGLSQSLNITRKEAKIFIDDYLASFPGVKQYMSDIVKDAKANGYVETLLHRR 772 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + +I S ++R ER A+N PIQGSAADI + AM+ K ++ K+LLQ+HD Sbjct: 773 RYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVEFDKQVQHTSYKAKLLLQVHD 832 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EL+FEVP+ E+ S + ME A ++L VPLKV+ W Sbjct: 833 ELIFEVPKSEVEEFSLFVEDIMEHA----LDLDVPLKVDSNYGPTW 874 Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 105/288 (36%), Positives = 158/288 (54%), Gaps = 13/288 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NAI GF +L K++ +E +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAILGFAKLLEKII----REEQPTHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R K P L Q P +R A+ I E++ +EADDII T Sbjct: 57 FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKHYELENYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178 + A++ F I++ D+DL QL + +Y T K+ D++H ++ G+ P + Sbjct: 117 SKEADQNDFETIIVTGDRDLTQLATQNVTIYYT-KKGVTDVDHYTPEFIAEKYNGLKPIQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GDS DNIPG+ G+G KTA LL ++ ++E + N ++ KK +E + E Sbjct: 176 IIDMKGLMGDSSDNIPGVAGVGEKTAIKLLNQFDSVEGVYENIDKVSGKKLKEKLELSHE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCN-GPRLISFLKALEFTKLI 285 A +S++L + PI + L L D N I K LEF +L+ Sbjct: 236 DALMSKELATINRYSPIEVTLNDTKLSDINDNHEKIELFKKLEFKQLL 283 >gi|224541516|ref|ZP_03682055.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM 15897] gi|224525553|gb|EEF94658.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM 15897] Length = 867 Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 200/538 (37%), Positives = 309/538 (57%), Gaps = 21/538 (3%) Query: 442 KNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG 499 +N L E L+YLK +E K G++IK + G+ + G+ D+ L SYVL+ Sbjct: 344 ENALKDESFLAYLK----DETKKKYGYDIKSAVIGSRWNGVEINGYTFDLSLASYVLEPA 399 Query: 500 ---RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556 + + Y + K K IP D+ + +H + + I +L ++ Sbjct: 400 IKEELKYVCTHFDYDGVQYDEEVFGKGAKKHIP----DDALLAQHTVSKAKAIYELKDVV 455 Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +L +K +YE ++ P+ ++ +ME G +ID D+LK++ + + L +IY + Sbjct: 456 TKELKDKKQYELYEDIELPVTRILGEMEFAGTEIDLDVLKEMDEAFDETIEKLSNDIYRI 515 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 SG FN+SSPKQLG +LF L G KTKTG +T+QD+ + +P++ +LE+R Sbjct: 516 SGTTFNISSPKQLGQVLFEDLGLKGGKKTKTGY--STSQDVLEKIIDAHPVVPLVLEYRM 573 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 L+K+ STY L + ++HT Y T TGRL+S++PNLQNIP++++ G+ IR+A Sbjct: 574 LTKLSSTYLKGLQEQVFP-DNKIHTIYKQTLTHTGRLSSVDPNLQNIPVRSEEGKLIRKA 632 Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 F+S L+S DYSQIELRILAH+A +T L F DIHR AA +FGV E+V+PQ Sbjct: 633 FVSH-NGYLVSFDYSQIELRILAHMAHVTNLIDAFNQGKDIHRHTAALVFGVKDEEVTPQ 691 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 MR AK +NF IIYG+S FRL+ + + +EA ++I +YF +P + Y+++ ++ Sbjct: 692 MRSQAKAVNFGIIYGMSEFRLSKDIGMSIAEARNFINKYFETYPEVKTYMDEVVEVCKKQ 751 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GYV T+ R+ + IN +R +R A+N PIQG+ ADI + AMI V K+L+ H L Sbjct: 752 GYVSTLLNRKRYIPTINDKNFMVRQQAQRYAMNTPIQGTGADILKLAMIEVDKALKVHHL 811 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++M+LQ+HDEL+F+V E+E+ ++ ME C I + VPL V + NW E Sbjct: 812 KSQMILQVHDELIFDVFEDELEEVMSLVKEKMEN-C---IKMDVPLIVEGNYAKNWCE 865 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 107/286 (37%), Positives = 157/286 (54%), Gaps = 13/286 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +++AFYAT +G+P N + GF M+ K+L N+ K I V Sbjct: 4 LILIDGNSLLFKAFYATSYTGNYMVNRNGIPTNGVYGFARMVDKILDNNPKYVI-----V 58 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FDY TFRNE+ YKA R + PE L+PQ L R A I E++GFE DDII T Sbjct: 59 AFDYGKKTFRNELLDTYKAQRKETPEELIPQFSLAREYLTAHNITWYEVEGFEGDDIIGT 118 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-EKIDI---EHVIKKWGIPPEKM 179 EK V++ + DKD QL+SP T +Y T+K ++DI + ++ K+G+ P+++ Sbjct: 119 LVDFGEKNNLKVSVYTGDKDAFQLISPQTTIYRTIKGVTELDIYNEQTLLDKYGLKPDQI 178 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L GD+ DNIPGI G+G KTA LL +Y +E + + + +K K E I E Sbjct: 179 RDFLGLMGDTADNIPGIKGVGEKTALKLLHQYETIEGLEEHQNELK-GKMGEKIRAGMED 237 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 A +S+K+ + DVP+ + L+ E + L SF + + LI Sbjct: 238 ALMSKKVATILRDVPLDVDLKKAEYEGYDYDTLKSFYETYDMNSLI 283 >gi|329733163|gb|EGG69500.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21193] Length = 876 Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 E++S+L EN + K+ ++ K + HR GI ++ DIML SY++D R+ D+ Sbjct: 357 ELVSWL----ENPNSKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412 Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+ + S+ + ++ K +K +P D + + V I +P + Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462 Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +K L Y + L+ P+ ++S+ME GI D L+++ EI + L L NI+D Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDA 522 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +GE FN++SPKQLG +LF L+ P KTKTG + T LEQ+ G++PII ILE+RQ Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 LSK++STY + L I+ QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+A Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639 Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 F PT K ++SADYSQIELR+LAHI + + + F N DIH A ++FGV ++V Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 MRR AK +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET+ RR + +I S ++R ER A+N PIQGSAADI + AM+ + +++ Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 K+LLQ+HDEL+FEVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L+ + + + A Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASIEDA 295 Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333 IE +I+ T K AI E+D R+ +K S F+ Sbjct: 296 IEKTFEIETSFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341 >gi|227484612|ref|ZP_03914928.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus ATCC 51172] gi|227237332|gb|EEI87347.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus ATCC 51172] Length = 877 Score = 347 bits (891), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 222/610 (36%), Positives = 344/610 (56%), Gaps = 66/610 (10%) Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432 N KD+ +K + I FK + D + HS+ ++AI T KD ++ +E Sbjct: 304 NLKDLIDSSKKTKEI---FFKSVYDGENYIHSEIYSLAIKT---KDTDTYIIEP------ 351 Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIML 491 E +S LK FE++ KI +IK + ++L + I + G ++D+ML Sbjct: 352 ---------------EKISELKNIFEDKTINKISFDIKEEMVLLDKLDIDLIGPYDDLML 396 Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI---------------PIDKISDS 536 M Y++D RSS+D+ ++Q +L+Y L S +S I + K+ S Sbjct: 397 MHYLIDPSRSSYDLKLLSQSYLTYE----LDSDESLIGKGAKTKKYAEVDQDDLAKLLAS 452 Query: 537 QVQEHAIENSNVILQLWLLLRPK----LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 QV +AIE+S R K L +++ +YE ++K + V++ MEI G D+ Sbjct: 453 QV--NAIEDS----------RDKVFKNLAEYEMVDLYENIEKRLARVLASMEIIGFGTDR 500 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 +L+ + A++ K + ++ IYDL+G +FN++S KQLG++LF L P KTKTG + T Sbjct: 501 KILEGLKADLEKQIEAITSEIYDLAGSEFNINSTKQLGEVLFKDLDLPVVKKTKTG-FST 559 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 A+ LE++ +PII+ I +R++ K++STY + L N I++ R+ + + TGR Sbjct: 560 DAKVLEKLR-DKHPIIEKIERYREIYKLRSTYIEGLENAIDE-DGRIRSTFRQNIASTGR 617 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S EPNLQN+PIKTD G+ IR+AF + K LI ADYSQIELRILA +A + F Sbjct: 618 LSSQEPNLQNLPIKTDEGRAIRKAFKAGEGKILIDADYSQIELRILASLADDKNMQDAFN 677 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 +DIH A+E+F +++V+ R AK +NF IIYGIS + L+ L IPR A +YI Sbjct: 678 RGIDIHTQTASEVFHTPLDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNIPRPRAKEYI 737 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 +Y +P I EY++ R GY+ET+F RR + EI+S ++R+ ER A+N PI Sbjct: 738 DKYKKSYPQIKEYMDDVVQLARSQGYIETLFKRRRYIPEISSRNFNVRSFGERIALNTPI 797 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI + AMI + L++ L K++LQIHDE++ E E++ A I+ ME A Sbjct: 798 QGTAADIIKIAMIDTYNKLKEEGLDAKIILQIHDEIIIESSEKDKEKARDILKKCMEGAA 857 Query: 953 LPKINLRVPL 962 K++L V + Sbjct: 858 KLKVDLLVDI 867 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/342 (32%), Positives = 176/342 (51%), Gaps = 17/342 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DGSS I+RAF+A P LS +DG+ N + GF M +N+ + + V FD Sbjct: 5 VMLIDGSSLIFRAFFALPNLSN-NDGVMTNGVYGFLTMY----RNAFDKYKPDYVLVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFRN+ Y DYKANR K P L Q +++ + G+ ++ GFEADDI+ TY Sbjct: 60 RSSKTFRNDEYKDYKANRDKTPNELSYQFGILKDVLDSMGVKYTDLDGFEADDIVGTYAR 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKK----WGIPPEKMVCL 182 +A++ G +I+ D+D +QLV +Y + K +E+ + K +GI P++++ + Sbjct: 120 MAKEAGDEAVLITGDRDYLQLVDDNVLVYLSKKGVSDTVEYTVDKIKEEYGITPKQLIDV 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+ GIG K A +++YG++EN+ N I KK +E++ A + Sbjct: 180 KGLMGDKSDNIPGVDGIGEKRALEFIRKYGSIENLYDNLDEISGKKTKESLENNEAVAYM 239 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S+K+ + T P+ + L L + + L L F K + + D D + E Sbjct: 240 SKKIGTIVTHAPVEFDYDDLALGEVDKEGLREKFSKLNFNKFLEEL----DGDGSESESK 295 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSE 344 T G ++ ID K F S+ D + I+SE Sbjct: 296 EF----TYKIGGNLKDLIDSSKKTKEIFFKSVYDGENYIHSE 333 >gi|82751278|ref|YP_417019.1| DNA polymerase I [Staphylococcus aureus RF122] gi|82656809|emb|CAI81238.1| DNA polymerase I [Staphylococcus aureus RF122] Length = 876 Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 209/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 E++S+L EN + K+ ++ K + HR GI ++ DIML SY++D R+ D+ Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412 Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+ + S+ + ++ K +K +P D + + V I +P + Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462 Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +K L Y + L+ P+ ++S+ME GI D L+++ EI + L L NI+D Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDA 522 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +GE FN++SPKQLG +LF L+ P KTKTG + T LEQ+ G++PII ILE+RQ Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 LSK++STY + L I+ QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+A Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639 Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 F PT K ++SADYSQIELR+LAHI + + + F N DIH A ++FGV ++V Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 MRR AK +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ Sbjct: 698 DILMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET+ RR + +I S ++R ER A+N PIQGSAADI + AM+ + +++ Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 K+LLQ+HDEL+FEVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++G +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFGTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L+ + + + A Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASIEDA 295 Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333 IE +++ T K AI E+ R+ +K S F+ Sbjct: 296 IEKTFEIETSFDNVDFTSLKEAAIHFELHGGNYLRNNILKFSLFTG 341 >gi|325283273|ref|YP_004255814.1| DNA polymerase I [Deinococcus proteolyticus MRP] gi|324315082|gb|ADY26197.1| DNA polymerase I [Deinococcus proteolyticus MRP] Length = 897 Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 171/410 (41%), Positives = 264/410 (64%), Gaps = 8/410 (1%) Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 L +Y ++KP+ V+++ME G+++D + L+ +S +++ L LE I++ +G +F++ S Sbjct: 493 LKLYTEVEKPLSGVLARMEARGVRLDSEYLQGLSLALAERLERLEAQIHEAAGREFSIRS 552 Query: 626 PKQLGDILFTKLKFPSGAKTK-TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 QL +L+ +L SG KTK TG+ T LE + ++PII ILE+R+L K++ TY Sbjct: 553 RDQLEAVLYDELGLASGKKTKLTGKRSTAMTALEPLRD-EHPIIPLILEYRELEKLRGTY 611 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 D LP +N RT R+HT ++ + TGRL+SL PNLQNIPI+++ G++IR+ FI+ + Sbjct: 612 LDPLPRLVNPRTGRLHTTFAQTAVATGRLSSLNPNLQNIPIRSEEGRQIRKGFIADGGFR 671 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L++ADYSQ+ELR++AHIA P+ + F+ DIHR AA++ G++ V RR AKT+ Sbjct: 672 LVAADYSQLELRLMAHIAGDEPMQRAFQEGADIHRRTAAQVLGLDESTVDVNQRRAAKTV 731 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF ++YG+S RL+ +L IP +EA +I+ YF +PGI YIE+T F RQ+GYVET++G Sbjct: 732 NFGVLYGMSAHRLSNELGIPYAEATSFIENYFGIYPGIQRYIEETLEFGRQHGYVETLYG 791 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + E+ + ++R ER A N PIQG+AADI + AM+++ L+ L +MLLQ+ Sbjct: 792 RRRYVPELKARNRNLREAGERLAYNMPIQGTAADIMKMAMVALEPQLD--ALGARMLLQV 849 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL+ E P + + + ME + L VPL V +S+NW E Sbjct: 850 HDELLIEAPADRAEEVAALTRQVMEGV----VELNVPLAVEAGISDNWYE 895 Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/260 (37%), Positives = 141/260 (54%), Gaps = 19/260 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG + YR+++A P LS G +AI GF +L + + V+FD Sbjct: 13 LVLIDGHALAYRSYFALPPLS-NSGGESTHAIVGFMRQALRLARQK-----GNQLVVVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+E Y DYK+ R + P L PQ+ +R A G P +E +G+EADD+IA+ T Sbjct: 67 PPGGTFRHEQYEDYKSGRAETPSDLPPQIRRIRELVDALGWPRLEEKGYEADDVIASLTR 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKID-----IEHVIKKWGIPPEKMVC 181 A++EG V I+++D+D QL L D VK K D E V+ K+G+ E+ V Sbjct: 127 RAQREGMEVRILTSDRDAYQL------LADDVKVIKNDNSLFGPEDVLDKYGVTVEQWVD 180 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGN--LENILINASRIKQKKRRENILEYAET 239 +ALTGD+ DNIPG GIG KTA +LQEYG A ++ K R+ +L+ + Sbjct: 181 FRALTGDASDNIPGAKGIGPKTATKILQEYGTLDAALDAAKAGTLQPKGTRQKLLDSEDA 240 Query: 240 ARLSRKLVMLRTDVPITIPL 259 R SR+L + D+ + L Sbjct: 241 VRFSRELSQMVCDLELACEL 260 >gi|282909001|ref|ZP_06316819.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97] gi|282327265|gb|EFB57560.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97] Length = 876 Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 230/642 (35%), Positives = 344/642 (53%), Gaps = 69/642 (10%) Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-----TLDQKDDTSFKVE 425 ++ +D QQ +K+E FK + +D S AI + + D D TS K Sbjct: 260 LMTHQDEQQ--EKIELFKKLEFKQLLADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEA 317 Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSY---------------------LKKFFENEHFLK 464 TI +L G N L IL + L + EN + K Sbjct: 318 TIHFELD--------GGNYLRNNILKFSLFTGEKHIVINADDIINYAELVSWLENPNTKK 369 Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKEIL- 521 + ++ K + HR GI ++ DIML SY++D R+ D+ S+ + S+ + ++ Sbjct: 370 VVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSI 429 Query: 522 --KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LD 573 K +K +P D + + V I +P + +K L Y + L+ Sbjct: 430 YGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM--DKQLEEYNQVELLADLE 479 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 P+ ++S+ME GI D L+++ EI + L L NI+D +GE FN++SPKQLG +L Sbjct: 480 LPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVL 539 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 F L+ P KTKTG + T LEQ+ G++PII ILE+RQLSK++STY + L I+ Sbjct: 540 FETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQLSKLQSTYVEGLQKVIS 597 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADY 750 QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+AF PT K ++SADY Sbjct: 598 D-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAF--KPTSKDSVILSADY 654 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELR+LAHI + + + F N DIH A ++FGV ++V MRR AK +NF I+Y Sbjct: 655 SQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVY 714 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 GIS + L+ L I R +A +I Y FPG+ +Y+ + G+VET+ RR + Sbjct: 715 GISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIP 774 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 +I S ++R ER A+N PIQGSAADI + AM+ +++ K+LLQ+HDEL+F Sbjct: 775 DITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAHKMKETTYQAKLLLQVHDELIF 834 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 835 EVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 120/341 (35%), Positives = 178/341 (52%), Gaps = 31/341 (9%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L+ Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLL------------ 283 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338 DI+ + + AIE + +T+ F+SL + T Sbjct: 284 ------ADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEAT 318 >gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland] gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland] gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613] Length = 875 Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 198/538 (36%), Positives = 317/538 (58%), Gaps = 34/538 (6%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS 501 N ++ + ++ FE++ KI ++ K + +L + GI G + DI L +Y+++ R Sbjct: 364 NNTKEQFIEVCREMFESKEIKKITYDAKNPRTILRKLGIEFNGIKFDINLAAYLINPVRK 423 Query: 502 SHDIASIAQKWL--SYTRK-EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558 ++I+S+A ++L + R+ E LK I+ N++ L+ +L Sbjct: 424 EYEISSLASEYLFKNINREDEFLK--------------------IKEVNIMPNLYKVLEE 463 Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 K+ + + + ++++P+ + +S ME G ++D+D+L Q+ + + S + IY +S Sbjct: 464 KIKEQDMEELLYKVEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSE 523 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 E+FN++SPKQLG ILF KL P KTKTG + T A+ L+++ +PII I +RQL+ Sbjct: 524 EEFNINSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLDKLR-DKHPIIDKITYYRQLT 581 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 KI STY + L I++ ++H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ FI Sbjct: 582 KIYSTYIEGLKAAIDE-DGKIHSNFNQTVTATGRLSSTEPNLQNIPIKYEMGREIRKVFI 640 Query: 739 SPPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 P T ++SADYSQIELR+LAHI+ + F DIH A+E+F V IE+V+P Sbjct: 641 -PNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTASEVFKVPIEEVTPL 699 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 MR +AK +NF I+YGI F L+ L I R EA YI Y R+P + Y+E + Sbjct: 700 MRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKLYLENIVEEAVEK 759 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GYV TI RR + E+ S ++ ER A+N+PIQGSAADI + AM++VH+ L++ Sbjct: 760 GYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNVHRKLKEDNF 819 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++LQ+HDEL+ V ++E+ ++ ME+ + L+V L V+I + NNW E Sbjct: 820 KSSIILQVHDELILNVHKDELEKIKALVKKEMEQV----LELKVGLDVDINIGNNWYE 873 Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 126/346 (36%), Positives = 188/346 (54%), Gaps = 32/346 (9%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L ++D +S + RAFYA P L +G+ NAI GF NML K+ KE I Sbjct: 1 MNKE-RLLILDSNSLLNRAFYALPDLMT-GEGIHTNAIYGFVNMLLKM-----KEEINPD 53 Query: 61 FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + V FD A TFR+E Y DYKA R K+PE L Q P+++ A I EI GFEADD Sbjct: 54 YIVAAFDRKAPTFRHEEYKDYKAGRKKMPEELAQQFPIIKELLSALAINIFEIDGFEADD 113 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175 +I T + AE++G V I++ DKD +QL + + + T K +E D +++++G+ Sbjct: 114 LIGTLSVFAEEKGIEVYIVTGDKDALQLATDSVKVVITKKGITEKEIYDKNRMVEEFGVT 173 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++ L GD+ DNIPG+PGIG KTA L++EY ++E + N IK KK +EN+ E Sbjct: 174 PKEFIDVKGLMGDTSDNIPGVPGIGEKTAFKLIKEYKSIETVFENIENIKGKKLKENLHE 233 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 Y E A S+KL + +VPI + LE + E+ + ++ + LEF L+N+V Sbjct: 234 YREQAIFSKKLATIICNVPIDMSLEDIKSKEEYDINKVREMFERLEFKSLMNKVGKG--- 290 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340 N+G +E E+ + +F L + K Sbjct: 291 ----------------NEGETVEEEVSYKNIVSLEEFRDLKNNIIK 320 >gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020] gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020] Length = 879 Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 203/515 (39%), Positives = 311/515 (60%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEIL-- 521 ++ K K++L GI + + D L +Y+L S +++A+IA+ L+ E++ Sbjct: 373 YDFKRSKVLLSHLGIDLPQANYDARLANYLL-SNIEDNELATIARLHTNLNMEADEVVYG 431 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K + P D + +H V++ ++ KL V K +Y ++ P+ +V++ Sbjct: 432 KGVKRAFP----EDEALFDHLARKIQVLVDSKAVILDKLAVNKEEDLYFDIELPLANVLA 487 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI +++ L++++ + + SL E IY+++GE+FN++SPKQLG ILF K++ P Sbjct: 488 KMEIAGITVNKTALQEMAEQNKAVIESLTEEIYEMAGEEFNINSPKQLGSILFEKMQLPL 547 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ+SK++STY L ++I ++HT Sbjct: 548 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQISKLQSTYVIGLQDYI-MSDGKIHT 606 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S +PNLQNIP++ + G+ IR+AF+ S L+S+DYSQIELR+LAH Sbjct: 607 RYIQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFLPSSEDAVLLSSDYSQIELRVLAH 666 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F+ + DIH A +FG+ E+ V+P RR+AK +NF I+YGIS F L+ Sbjct: 667 ISGDEHLIAAFKENADIHTSTAMRVFGIEKEEDVTPNDRRNAKAVNFGIVYGISDFGLSN 726 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A DYI+ YF R+PGI EY+E R GYVET+F RR +INS +I Sbjct: 727 NLGITRKKAKDYIETYFERYPGIKEYMETVVRDARDTGYVETLFNRRRELPDINSRNFNI 786 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ K+L + + KMLLQ+HDE+V EVP +E+ Sbjct: 787 RSFAERTAINSPIQGSAADILKIAMINLDKALSEGQFKAKMLLQVHDEIVLEVPNDELEA 846 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ +ME A ++L VPL + W E Sbjct: 847 IKALVKKTMEGA----VDLAVPLLADENTGKTWYE 877 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 117/295 (39%), Positives = 164/295 (55%), Gaps = 17/295 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+K+N L L+DGSS +RAF+A L S + GL NAI GF ML +++ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA--LYSQIDRFKNQSGLHTNAIYGFHLMLDHMMKRIQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E++ DYKA R K P+ Q P +R A G+P ++ + Sbjct: 57 --PTHILVAFDAGKTTFRTEMFADYKAGRAKTPDEFREQFPYIREMLTALGVPFYDLANY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AEK F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAEKTEVPFDVTIVSGDKDLIQLTDANTVVEISRKGVTDFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ PE+ + L+AL GD DNIPG+ IG KT LL E+G+LE I N K K Sbjct: 175 EKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYENIDSFKASKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 +EN++ E A LS+ L + T+ PITI LE L+ N L+ F ++F +L Sbjct: 235 KENLINDKEQAFLSKTLATINTESPITIGLEDLVYHGPNVQVLMEFYDEMDFKQL 289 >gi|227510537|ref|ZP_03940586.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190189|gb|EEI70256.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 883 Score = 347 bits (890), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 195/504 (38%), Positives = 315/504 (62%), Gaps = 14/504 (2%) Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDK 532 L+R I+++ + D++L+SY+L++ +S+D+ ++A+ + + E + + + ID Sbjct: 387 LYRSSITLQNVDFDMLLVSYLLNTTNNSNDVGTVAKLHGFANIKTDEEVYGKGAKKKIDP 446 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + +H + + I QL + L +Y ++ + V+++MEI GI+++ Sbjct: 447 EA-PEFFDHIVHKAKAIDQLHNDMFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNP 505 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 + L+Q+ ++ + L +E+ I+ +GE+FN+ SPKQLG ILF K++ P KTKTG + T Sbjct: 506 ETLEQMGSKFKERLAEIEQTIFQEAGEEFNIGSPKQLGHILFEKMRLPILKKTKTG-YST 564 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE++ D PI++N+L +RQ+SK++STY D L I+K +VHT Y T TGR Sbjct: 565 SVDVLEKL-APDAPIVQNVLNYRQISKLQSTYIDGLLKVIHKNDSKVHTRYLQTLTQTGR 623 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 L+S++PNLQNIP++++ G+ IR+AF+ S ++ S+DYSQIELR+LA I + + F Sbjct: 624 LSSVDPNLQNIPVRSEEGRLIRQAFVPSHEDWQIWSSDYSQIELRVLASITGDKNMQEAF 683 Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 DIH A IFG+ + + V+P++RR AK +NF I+YGIS + LA I R +A Sbjct: 684 REGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDYGLANNTGISRKQAHQ 743 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I+RYF +PG+ +Y E F + +GYVETI RR + +I+S ++R+ ER A+N Sbjct: 744 FIQRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRRYLPDIHSRNFNLRSFAERTAMNT 803 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI + AMI++ ++L+ L T+MLLQ+HDEL+FEVP +E+ T ++I M+ Sbjct: 804 PIQGSAADIIKIAMINMDEALK--PLKTRMLLQVHDELIFEVPNDEMETVEKLIPKVMDS 861 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A I L +PLKV W E Sbjct: 862 A----IKLNIPLKVESHWGKTWYE 881 Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 105/291 (36%), Positives = 157/291 (53%), Gaps = 12/291 (4%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S ++AFYA L R GL +AI GF ML K+LQ + I V Sbjct: 5 LLLIDGNSIAFKAFYALYNSLERFTNSSGLHTSAIYGFNRMLDKVLQEEKPTDIL----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR +++ DYK NR K P L Q P +R +A GI + E+ +EADDII T Sbjct: 61 AFDAGKTTFRTKMFSDYKGNRAKTPTELSEQFPFIRELVKARGISSYELPDYEADDIIGT 120 Query: 124 YTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEK 178 AE +G + V I++ D+DL QL S T + T EK +HV +K G+ P + Sbjct: 121 LAKEAEDKGDYQVVILTGDRDLTQLTSDKTTVQISKKGTTDLEKYTPQHVEEKLGVKPSQ 180 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DN PG+ +G KTA L+Q++G++ENI N + K +E++L + Sbjct: 181 IIDIKGLKGDNSDNYPGVTKVGDKTAMKLVQQFGSIENIYSNIDHVSGKMLKEHLLNDKD 240 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A + L ++ D PI + L+ L E N RL F + + F ++ + Sbjct: 241 KAERGKVLATIKRDAPIKVSLDDLKYEGDNLDRLTDFYERMGFKSFLSNLG 291 >gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1] gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1] Length = 956 Score = 347 bits (890), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 192/500 (38%), Positives = 292/500 (58%), Gaps = 41/500 (8%) Query: 481 ISMRG-----FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535 +S+RG +D +L +Y+LD ++ + +A+++L P D + Sbjct: 486 LSVRGTVVEPGDDPLLYAYLLDPANTNMPV--VAKRYLD-----------REWPADAPTR 532 Query: 536 SQVQEHAIENSNVILQLWLLLR--PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 + + H LLR P L+ + +Y+ ++KP+ V+ +ME+ G+Q+D D Sbjct: 533 AAITGH-------------LLRELPPLLDDARRKMYDEMEKPLSGVLGRMEVRGVQVDSD 579 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKT 652 L+ +S + L LE I++ +GE+F++ SPKQL +L+ KL+ S KTK TGQ T Sbjct: 580 FLQTLSIQAGVRLADLESQIHEYAGEEFHIRSPKQLETVLYDKLELASSKKTKLTGQRST 639 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 LE + +PII +LE+R+L K++ TY D +PN +N T R+HT ++ + TGR Sbjct: 640 AVSALEPLRDA-HPIIPLVLEFRELDKLRGTYLDPIPNLVNPHTGRLHTTFAQTAVATGR 698 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+SL PNLQNIPI+++LG++IR+ FI+ LI+ADYSQIELR+LAHIA + Q F Sbjct: 699 LSSLNPNLQNIPIRSELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFV 758 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 DIHR AA++ G++ V RR AKT+NF ++YG+S RL+ L IP +EAA +I Sbjct: 759 EGADIHRRTAAQVLGLDEATVDANQRRAAKTVNFGVLYGMSAHRLSNDLGIPYAEAATFI 818 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 + YF +PGI YI T +F R +GYVET++GRR + ++S R ER A N PI Sbjct: 819 EIYFATYPGIRRYINHTLDFGRTHGYVETLYGRRRYVPGLSSRNRVQREAEERLAYNMPI 878 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI + AM+ + L+ + +MLLQ+HDEL+ E P ++ + + ME Sbjct: 879 QGTAADIMKLAMVQLDPQLD--AIGARMLLQVHDELLIEAPLDKAEQVAALTKKVMENV- 935 Query: 953 LPKINLRVPLKVNIKVSNNW 972 + L+VPL V + NW Sbjct: 936 ---VQLKVPLAVEVGTGPNW 952 Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 111/330 (33%), Positives = 167/330 (50%), Gaps = 39/330 (11%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K + L L+DG + +R+++A P L+ G +AI GF +L +L + + I Sbjct: 45 KPDTLVLIDGHALAFRSYFALPPLNNSK-GEMTHAIVGFMKLLLRLARQKSNQVI----- 98 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V+FD P TFR+E Y YK+ R + PE L Q+ +R A G P +E G+EADD+IA Sbjct: 99 VVFDPPVKTFRHEQYEGYKSGRAQTPEDLPGQINRIRALVDALGFPRLEEPGYEADDVIA 158 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 + T +AE +G+ V I+++D+D QL+ + I V +K+G+ + V Sbjct: 159 SLTRMAEGKGYEVRIVTSDRDAYQLLDEHVKVIAN-DFSLIGPAQVEEKYGVTVRQWVDY 217 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAETA 240 +ALTGD+ DNIPG GIG KTAA LLQEYG LE + +A +K R+ +L+ E Sbjct: 218 RALTGDASDNIPGAKGIGPKTAAKLLQEYGTLEKVYEAAHAGTLKPDGTRKKLLDSEENV 277 Query: 241 RLSRKLVMLRTDVPITI-------PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 + S L + TD+P+ I P L+ ED L LE L Sbjct: 278 KFSHDLSCMVTDLPLDIEFGVRRLPDNPLVTED--------LLTELELHSL--------- 320 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRD 323 P++L +N E G A + ++R+ Sbjct: 321 ------RPMILGLNGPEQDGHAPDDLLERE 344 >gi|258508756|ref|YP_003171507.1| DNA polymerase I [Lactobacillus rhamnosus GG] gi|257148683|emb|CAR87656.1| DNA polymerase I [Lactobacillus rhamnosus GG] gi|259650062|dbj|BAI42224.1| DNA polymerase I [Lactobacillus rhamnosus GG] Length = 881 Score = 347 bits (889), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 198/508 (38%), Positives = 306/508 (60%), Gaps = 29/508 (5%) Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531 HR G+ + D++L SY+++ +S+D+ IA+ + R E + K K +P D Sbjct: 387 HRLGLKLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAKRQVPED 446 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 K+ + E S + L L L ++ ++ ++ P+ V+++MEI GI ++ Sbjct: 447 KL----LFEQFARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGITLN 502 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 LK + E S+++ LEE IY +G KFNL+SPKQLG++LF KL P KTKTG + Sbjct: 503 AQTLKDMGTEFSQSIKVLEEKIYGEAGVKFNLNSPKQLGEVLFEKLNLPVIKKTKTG-YS 561 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL-----PNHINKRTQRVHTFYSLA 706 T+ L ++ +PI+++IL++R +K+ STY L P+H ++HT Y Sbjct: 562 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTYVVGLLKAQMPDH------KIHTRYLQT 614 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKIT 765 T TGRL+S++PN+QNIP + D G+ IR+AF+ S P ++ S+DYSQIELR+L+HI+ Sbjct: 615 LTQTGRLSSVDPNMQNIPAR-DEGKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDE 673 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 + Q F++ +DIH A +IFG++ ++V+P MRR AK NF I+YGIS + LA + I Sbjct: 674 NMQQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYGISDYGLAQNIGIS 733 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R +A +I YF ++P +H+Y+E R++GYVET+F RR + +I+S ++R E Sbjct: 734 RKQAKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAE 793 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R A+N PIQGSAADI + AMI + K+L++ L KMLLQ+HDEL+FE P E+ Q++ Sbjct: 794 RTAMNTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLV 853 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972 M+ A ++L VPLKV W Sbjct: 854 PKIMDSA----VSLAVPLKVESHYGPTW 877 Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 109/299 (36%), Positives = 162/299 (54%), Gaps = 17/299 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + L L+DG+S +RAF+A L R DGL NAI F NML +L++ + ++ Sbjct: 1 MTSQTKLLLIDGNSIAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKSVKPDAA 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 V FD TFR Y DYK+ R K P LL QLP ++ GI E++ +EA Sbjct: 61 L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIQHYELKDYEA 116 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T A+ G+ TI++ D+DL QL + T + TVK E EHV +K G Sbjct: 117 DDIIGTMAKRADDAGWQTTIVTGDRDLTQLTTDQTTVQVTVKGVNELEAYTPEHVKEKLG 176 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P +++ L+ L GD+ DN PG+ +G KTA LL++YG++EN+ N +K K +E++ Sbjct: 177 ITPTQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLKQYGSIENLYANIDAMKTSKMKESL 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKLINRVA 289 + + A LS++L + D P+TI L + NGP +L F + L+ ++ Sbjct: 237 INDKDKAYLSKQLATIDRDAPVTIDLADV---KYNGPDLAKLRDFYTKMNMNSLLKKIG 292 >gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704] gi|167664203|gb|EDS08333.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704] Length = 871 Score = 347 bits (889), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 176/423 (41%), Positives = 272/423 (64%), Gaps = 11/423 (2%) Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611 LW L+ L+ + V + P++ + ME+ G++++ + LK ++ ++ LE+ Sbjct: 458 LWKRLKECLMDRLFMDV----EMPLVFTLYDMEVNGVRVEAEALKYYGDQLGAKIVELEK 513 Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671 +IY+ +GE FN++SPKQLG +LF +K P G KTKTG + T A LE++ D PII I Sbjct: 514 DIYEEAGENFNINSPKQLGVVLFENMKIPGGKKTKTG-YSTAADVLEKL-APDYPIIAKI 571 Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731 LE+RQ +K+KSTYAD L N+I + R+H+ ++ T TGRL+S EPNLQNIPI+ +LG+ Sbjct: 572 LEYRQYTKLKSTYADGLANYI-REDGRIHSKFNQTITATGRLSSTEPNLQNIPIRVELGR 630 Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791 IR+ FI + ADYSQIELR+LAH + + L + ++ DIHR+ A+++F + + Sbjct: 631 LIRKVFIPEDGFVFVDADYSQIELRVLAHCSGDSHLIEAYKEKKDIHRITASQVFHIPFD 690 Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851 +V+ Q RR+AK +NF I+YGIS F L+ L I R EA+ YI+ YF +PGI +++ T Sbjct: 691 EVTDQQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASKYIEDYFTAYPGIKIFLDDTVK 750 Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911 ++ GYV T+FGRR E++S R+ ER A+NAPIQG+AADI + AM V + L Sbjct: 751 HAKEMGYVVTLFGRRRPVPELSSSNYMQRSFGERVAMNAPIQGTAADIIKIAMTGVGRRL 810 Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 ++ K+ ++++LQ+HDEL+ E + E+ +I+ ME+A +L VPL++++ N Sbjct: 811 KEQKMKSRLVLQVHDELLVEAYKPELDQVKKILKEEMEQAA----SLDVPLEIDMHTGEN 866 Query: 972 WQE 974 W E Sbjct: 867 WYE 869 Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 159/291 (54%), Gaps = 11/291 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ DGL NAI GF +++K+L+ + + + V FD Sbjct: 5 IVLIDGHSILNRAFYGLPDLTNA-DGLHTNAIYGFLTIMFKILEEEKPD----YLTVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+E+Y +YK R + + L Q+P+++ +A GI IE G EADD+I T + Sbjct: 60 VHAPTFRHEMYEEYKGTRKPMADELRQQVPVIKEVLKAMGIRIIEQAGLEADDLIGTLSK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIE-----HVIKKWGIPPEKMV 180 ++G V++IS D+DL+QL + + K+ + ++E V +++ + P + + Sbjct: 120 RCAQKGMEVSVISGDRDLLQLATEQVKIRIPKTKQGRTEVEDYYAQDVKERYQVTPTEFI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+AL GD+ DNIPG+P IG KTA ++ EY ++E + +K + + + E+ + A Sbjct: 180 DLKALMGDASDNIPGVPSIGEKTATKIITEYHSIEEAYAHVDEVKPPRASKALKEHWDMA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 +S++L + D LE L + ++ + L+F L+ R T Sbjct: 240 VMSKRLATINVDADFPYELEEAKLGNIYTEEAYAYFQKLQFKNLLQRFDVT 290 >gi|260588620|ref|ZP_05854533.1| DNA polymerase I [Blautia hansenii DSM 20583] gi|260541095|gb|EEX21664.1| DNA polymerase I [Blautia hansenii DSM 20583] Length = 880 Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 186/489 (38%), Positives = 303/489 (61%), Gaps = 9/489 (1%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545 D L +Y+L+ +S + IA+++L + KE L + S I + ++ + Sbjct: 397 DAGLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLLGKLSYIKAANEKEEELAKSVCYM 456 Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 + L+ L L E + +Y ++ P++ ++ ME GI ++ + LK+ ++ Sbjct: 457 AYTALKSRTSLLEALEKENMKELYTDMEMPLLFTLADMEKEGILVEAEALKEYGEKLQVR 516 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 + +LE+ I++ +GE+FN++SPKQLG ILF KL+ P G KTKTG + T A LE++ ++ Sbjct: 517 IEALEKEIWEQAGEEFNINSPKQLGVILFEKLELPGGKKTKTG-YSTAADVLEKL-APEH 574 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 ++ +ILE+RQL+K+KSTYAD L N+I + R+H+ ++ T TGR++S EPNLQNIP+ Sbjct: 575 KLVADILEYRQLTKLKSTYADGLANYIAE-DGRIHSTFNQTITATGRISSTEPNLQNIPV 633 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 +T+LG+ +R+ FI + ADYSQIELR+LAH++ L Q ++ + DIHR+ A+++ Sbjct: 634 RTELGRLLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQV 693 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 F + ++V+P RR+AK +NF I+YGIS F L+ L I R EAA YI+ YF +P I + Sbjct: 694 FHIPFDEVTPLQRRNAKAVNFGIVYGISSFGLSQDLSISRKEAAQYIESYFQTYPKIKGF 753 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 ++ ++ GYV T+F RR E+ S R+ ER A+N+PIQG+AADI + AMI Sbjct: 754 LDGLVEEAKEKGYVSTLFHRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAMI 813 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 V+K L++ L ++++LQ+HDEL+ E +EE+ S I+ M++A +L V L+++ Sbjct: 814 RVNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEAA----HLSVALEID 869 Query: 966 IKVSNNWQE 974 + NW E Sbjct: 870 MHTGENWYE 878 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 107/291 (36%), Positives = 162/291 (55%), Gaps = 11/291 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ +GL NAI GF N+L+K+L+ + + + V FD Sbjct: 5 ILLIDGHSILNRAFYGLPDLTNA-EGLHTNAIYGFLNILFKILEEEKPD----YLTVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y YK R +P L Q+P+++ A G+ I +G+EADD++ T Sbjct: 60 LHAPTFRHKQYEAYKGTRKPMPMELREQIPVMKDVLSAMGVTMITKEGYEADDLLGTVAK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180 +E++G VTI+S D+DL+QL S C+ K K IE V + + + P +++ Sbjct: 120 KSEEKGMDVTILSGDRDLLQLASSHICIRIPKTKGGKTTIEDYYENDVKEAYQLTPLQII 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+AL GD+ DNIPG+PG+G KTA +L EYG +EN +A +K K + LE+ + A Sbjct: 180 ELKALMGDTADNIPGLPGVGEKTATKILLEYGTVENAKAHAEELKPNKAKTAFLEHYDLA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 LS++L + D PI E + + P F K LEF ++R T Sbjct: 240 VLSKELATICIDSPIEYDWEGAKIHNLYTPEAYEFFKELEFKNFLSRFEDT 290 >gi|331082028|ref|ZP_08331156.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405623|gb|EGG85153.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium 6_1_63FAA] Length = 880 Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 186/489 (38%), Positives = 303/489 (61%), Gaps = 9/489 (1%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLS--YTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545 D L +Y+L+ +S + IA+++L + KE L + S I + ++ + Sbjct: 397 DAGLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLLGKLSYIKAANEKEEELAKSVCYM 456 Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 + L+ L L E + +Y ++ P++ ++ ME GI ++ + LK+ ++ Sbjct: 457 AYTALKSRTSLLEALEKENMKELYTDMEMPLLFTLADMEKEGILVEAEALKEYGEKLQVR 516 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 + +LE+ I++ +GE+FN++SPKQLG ILF KL+ P G KTKTG + T A LE++ ++ Sbjct: 517 IEALEKEIWEQAGEEFNINSPKQLGVILFEKLELPGGKKTKTG-YSTAADVLEKL-APEH 574 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 ++ +ILE+RQL+K+KSTYAD L N+I + R+H+ ++ T TGR++S EPNLQNIP+ Sbjct: 575 KLVADILEYRQLTKLKSTYADGLANYIAE-DGRIHSTFNQTITATGRISSTEPNLQNIPV 633 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 +T+LG+ +R+ FI + ADYSQIELR+LAH++ L Q ++ + DIHR+ A+++ Sbjct: 634 RTELGRLLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQV 693 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 F + ++V+P RR+AK +NF I+YGIS F L+ L I R EAA YI+ YF +P I + Sbjct: 694 FHIPFDEVTPLQRRNAKAVNFGIVYGISSFGLSQDLSISRKEAAQYIESYFQTYPKIKGF 753 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 ++ ++ GYV T+F RR E+ S R+ ER A+N+PIQG+AADI + AMI Sbjct: 754 LDGLVEEAKEKGYVSTLFHRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAMI 813 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 V+K L++ L ++++LQ+HDEL+ E +EE+ S I+ M++A +L V L+++ Sbjct: 814 RVNKRLKEENLKSRLVLQVHDELLIETAKEEVEQVSAILEQEMKEAA----HLSVALEID 869 Query: 966 IKVSNNWQE 974 + NW E Sbjct: 870 MHTGENWYE 878 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 107/291 (36%), Positives = 162/291 (55%), Gaps = 11/291 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ +GL NAI GF N+L+K+L+ + + + V FD Sbjct: 5 ILLIDGHSILNRAFYGLPDLTNA-EGLHTNAIYGFLNILFKILEEEKPD----YLTVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y YK R +P L Q+P+++ A G+ I +G+EADD++ T Sbjct: 60 LHAPTFRHKQYEAYKGTRKPMPMELREQIPVMKDVLSAMGVTMITKEGYEADDLLGTVAK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180 +E++G VTI+S D+DL+QL S C+ K K IE V + + + P +++ Sbjct: 120 KSEEKGMDVTILSGDRDLLQLASSHICIRIPKTKGGKTTIEDYYENDVKEAYQLTPLQII 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+AL GD+ DNIPG+PG+G KTA +L EYG +EN +A +K K + LE+ + A Sbjct: 180 ELKALMGDTADNIPGLPGVGEKTATKILLEYGTVENAKAHAEELKPNKAKTAFLEHYDLA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 LS++L + D PI E + + P F K LEF ++R T Sbjct: 240 VLSKELATICIDSPIEYDWEGAKIHNLYTPEAYEFFKELEFKNFLSRFEDT 290 >gi|242373981|ref|ZP_04819555.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] gi|242348335|gb|EES39937.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] Length = 891 Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 205/530 (38%), Positives = 314/530 (59%), Gaps = 21/530 (3%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 S L ++ E+ +K ++ K + HR I+++ + D+ML SY++D R+ D+ S+ Sbjct: 371 SDLIEWLEDAQTVKTVYDAKKTYVAAHRLDINIQNVQFDVMLASYIIDPSRAIDDVKSVV 430 Query: 510 QKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 + +Y + + K +K IP D I + EH + I L+ +L Sbjct: 431 SLYGQNYVKDNVSIYGKGKKHHIPEDNI----LNEHVASITEAIASAKPLMEEQLKEYNQ 486 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 + + L+ P+ ++S+ME GI D + LK + EI + L L +NI++ +GE+FN++S Sbjct: 487 VELLADLELPLAKILSEMEEIGIYTDVNDLKHMENEIQEKLDVLIKNIHEAAGEEFNINS 546 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQLG +LF LK P KTKTG + T LEQ+ G++PII++ILE+RQLSK++STY Sbjct: 547 PKQLGVVLFETLKLPVIKKTKTG-YSTAVDVLEQLK-GEHPIIEHILEYRQLSKLQSTYV 604 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK- 744 + L I+K R+HT ++ TGRL+S++PNLQNIPI+ + G+KIR+AF PT + Sbjct: 605 EGLQKVISK-DNRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAF--KPTSED 661 Query: 745 --LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 ++SADYSQIELR+LAHI + L + F + DIH A ++F V V MRR AK Sbjct: 662 SVILSADYSQIELRVLAHITQDESLKEAFIHGHDIHTATAMKVFNVEANDVDSLMRRQAK 721 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ + GYVET+ Sbjct: 722 AVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETL 781 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 RR + +I S ++R+ ER A+N PIQGSAADI + AM+ ++ +++ K+LL Sbjct: 782 LHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFNEKVKNTNYHAKLLL 841 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 Q+HDEL+FE+P+ E+ S+ + ME A ++L VPLKV+ W Sbjct: 842 QVHDELIFELPKSEVEDFSEFVEEIMENA----LDLDVPLKVDSSYGPTW 887 Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 128/395 (32%), Positives = 203/395 (51%), Gaps = 44/395 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K++ KE +HF V FD Sbjct: 19 LVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKII----KEEQPNHFLVAFD 73 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ Y +YK R K P L Q P +R A+ I E++ +EADDII T + Sbjct: 74 AGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELENYEADDIIGTLSK 133 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEKMV 180 A++ G+ II+ D+DL QL + +Y T K+ D++H + +K+ G+ P++++ Sbjct: 134 EADQSGYETIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPSFIAEKYNGLEPKQII 192 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++ L GD+ DNIPG+PG+G KTA LL ++ ++E + N + KK +E ++ + A Sbjct: 193 DMKGLMGDTSDNIPGVPGVGEKTAIKLLNQFNSVEGVYDNIDEVTAKKLKEKLINSKDDA 252 Query: 241 RLSRKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 +S+ L + + PI + L+ LE D N + I K LEF +L++ + D DA N Sbjct: 253 LMSKDLATINVESPIEVSLKDTKLENQDDNHEK-IELFKKLEFKQLLSDI----DEDANN 307 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E + D +T + F +LS T E T + + K Sbjct: 308 EE--------------VTDKTFDVETDFQHIDFKNLSHATIHFELEDT--NYLKDNILKF 351 Query: 359 SQYPINNDSYTKIVNTKDIQQ------WVQKLETI 387 Y D ++N +DI+Q W++ +T+ Sbjct: 352 GLY---TDDTHIVINAEDIKQHSDLIEWLEDAQTV 383 >gi|310826548|ref|YP_003958905.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612] gi|308738282|gb|ADO35942.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612] Length = 885 Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 194/537 (36%), Positives = 316/537 (58%), Gaps = 12/537 (2%) Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500 K + S L + E + +GH++K + H + + D + +Y+L+ Sbjct: 351 KPAMVSAFFSGLGEIPEADSLQTVGHDLKNLTHIYHSQCSVIVNYTFDTYIGAYLLNPSD 410 Query: 501 SSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 +D+ ++A K+L T ++ K+ + + + +++ ++N VI +L L Sbjct: 411 QRYDLQTVAMKYLGDTIQSEEDFFGRGKTLVRAEDMDSARLAAFMVKNCEVIHRLEKPLA 470 Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617 K+ + + +++ ++ P++ +++ ME G ++D L+++S E K + +L IY+L+ Sbjct: 471 EKIEADGMTGLFQNIELPLLKIMASMEELGFKVDIHQLEELSVEFEKKIETLTSEIYELA 530 Query: 618 GEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 E FN++S KQLG ILF KLK P KTKTG + T A+ L+Q+ +PII+ I+++R Sbjct: 531 EEDDFNINSTKQLGTILFDKLKLPVVKKTKTG-YSTNAEVLDQLVLF-HPIIQKIIDYRM 588 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 +SK+ STY L ++ +T ++++ ++ T TGRL+S +PNLQNIP+KT++G++IR+ Sbjct: 589 ISKLDSTYGKGLIKLVDPKTHKIYSTFNQTVTATGRLSSSDPNLQNIPVKTEMGREIRKV 648 Query: 737 FI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F+ S + L+ ADYSQIELR+LAH++ L F + DIH A+EIF V ++ VS Sbjct: 649 FVPSAGDRVLVDADYSQIELRVLAHLSGDENLIDTFVKNQDIHTRTASEIFNVPMDAVSR 708 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 + R HAK INF +IYG F L L I R EA YI YF R+P + EY+E K ++ Sbjct: 709 EQRSHAKAINFGLIYGKQAFSLGKDLGITRGEAQSYIDLYFSRYPKVLEYMENIKAEAKE 768 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GYV TI+GRR + EINS + ER A+N PIQG+AADI + AMI V+ LE Sbjct: 769 KGYVTTIWGRRRYITEINSRNRMLVQAGERMALNTPIQGAAADIIKIAMIKVYDRLEREG 828 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 L +K++LQ+HDEL+ + + E T +++V ME A ++L+VPL V+ ++W Sbjct: 829 LKSKLILQVHDELIIDTLKTEQETVMKLLVEEMENA----VDLKVPLTVDAHAGDSW 881 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 105/285 (36%), Positives = 159/285 (55%), Gaps = 11/285 (3%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+DG+S +YR FY +S G+P NAI GF N+L K+ QN K + AV FD Sbjct: 7 LIDGNSLVYRMFYGVREMSNSK-GVPTNAIYGFVNVLVKI-QNEYK---PDYLAVAFDLS 61 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 A TFR++ Y DYK R K+PE L Q+ L++ GIP I +G+EADDII T + Sbjct: 62 APTFRHKEYEDYKGGRDKMPEDLQVQMDLLKELLGKMGIPMITKEGYEADDIIGTLSKQG 121 Query: 129 EKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQ 183 E II+ DKD QLV LY + +D ++++++G+ P +++ ++ Sbjct: 122 EARETKTQIITGDKDSFQLVDDYVNVLYTATRSGTQFATVDDAYIMERYGVTPRELIDVK 181 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD DNIPG+ G+G KTA L++EY N++ + + +K K++E + E+A S Sbjct: 182 ALMGDPSDNIPGVAGVGEKTAIKLIKEYHNIDTLYEHIDDLK-GKQKEKLEAGKESAFAS 240 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 R L + DVP+ + LE L + I L+ LEF ++N++ Sbjct: 241 RFLGTICLDVPLDLSLEDLAFKPIFTEESIEMLRDLEFKSILNKI 285 >gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1] gi|737486|prf||1922368A DNA polymerase I Length = 921 Score = 347 bits (889), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 189/498 (37%), Positives = 290/498 (58%), Gaps = 37/498 (7%) Query: 481 ISMRG-----FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535 +S+RG +D +L +Y+LD ++ + +A+++L P D + Sbjct: 451 LSVRGTVVEPGDDPLLYAYLLDPANTNMPV--VAKRYLD-----------REWPADAPTR 497 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + + H + P L+ + +Y+ ++KP+ V+ +ME+ G+Q+D D L Sbjct: 498 AAITGHLVREL-----------PPLLDDARRKMYDEMEKPLSGVLGRMEVRGVQVDSDFL 546 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTA 654 + +S + L LE I++ +GE+F++ SPKQL +L+ KL+ S KTK TGQ T Sbjct: 547 QTLSIQAGVRLADLESQIHEYAGEEFHIRSPKQLETVLYDKLELASSKKTKLTGQRSTAV 606 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE + +PII +LE+R+L K++ TY D +PN +N T R+HT ++ + TGRL+ Sbjct: 607 SALEPLRDA-HPIIPLVLEFRELDKLRGTYLDPIPNLVNPHTGRLHTTFAQTAVATGRLS 665 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 SL PNLQNIPI+++LG++IR+ FI+ LI+ADYSQIELR+LAHIA + Q F Sbjct: 666 SLNPNLQNIPIRSELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEG 725 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIHR AA++ G++ V RR AKT+NF ++YG+S RL+ L IP +EAA +I+ Sbjct: 726 ADIHRRTAAQVLGLDEATVDANQRRAAKTVNFGVLYGMSAHRLSNDLGIPYAEAATFIEI 785 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF +PGI YI T +F R +GYVET++GRR + ++S R ER A N PIQG Sbjct: 786 YFATYPGIRRYINHTLDFGRTHGYVETLYGRRRYVPGLSSRNRVQREAEERLAYNMPIQG 845 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AADI + AM+ + L+ + +MLLQ+HDEL+ E P ++ + + ME Sbjct: 846 TAADIMKLAMVQLDPQLD--AIGARMLLQVHDELLIEAPLDKAEQVAALTKKVMENV--- 900 Query: 955 KINLRVPLKVNIKVSNNW 972 + L+VPL V + NW Sbjct: 901 -VQLKVPLAVEVGTGPNW 917 Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 110/330 (33%), Positives = 166/330 (50%), Gaps = 39/330 (11%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K + L L+DG + +R+++A P L+ G +AI GF +L +L + + I Sbjct: 10 KPDALVLIDGHALAFRSYFALPPLNNSK-GEMTDAIVGFMKLLLRLARQKSNQVI----- 63 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V+FD P T R+E Y YK+ R + PE L Q+ +R A G P +E G+EADD+IA Sbjct: 64 VVFDPPVKTLRHEQYEGYKSGRAQTPEDLRGQINRIRALVDALGFPRLEEPGYEADDVIA 123 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 + T +AE +G+ V I+++D+D QL+ + I V +K+G+ + V Sbjct: 124 SLTRMAEGKGYEVRIVTSDRDAYQLLDEHVKVIAN-DFSLIGPAQVEEKYGVTVRQWVDY 182 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAETA 240 +ALTGD+ DNIPG GIG KTAA LLQEYG LE + +A +K R+ +L+ E Sbjct: 183 RALTGDASDNIPGAKGIGPKTAAKLLQEYGTLEKVYEAAHAGTLKPDGTRKKLLDSEENV 242 Query: 241 RLSRKLVMLRTDVPITI-------PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 + S L + TD+P+ I P L+ ED L LE L Sbjct: 243 KFSHDLSCMVTDLPLDIEFGVRRLPDNPLVTED--------LLTELELHSL--------- 285 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRD 323 P++L +N E G A + ++R+ Sbjct: 286 ------RPMILGLNGPEQDGHAPDDLLERE 309 >gi|229552558|ref|ZP_04441283.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|229314110|gb|EEN80083.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] Length = 881 Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 198/508 (38%), Positives = 306/508 (60%), Gaps = 29/508 (5%) Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531 HR G+ + D++L SY+++ +S+D+ IA+ + R E + K K +P D Sbjct: 387 HRLGLHLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAKRQVPED 446 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 K+ + E S + L L L ++ ++ ++ P+ V+++MEI GI ++ Sbjct: 447 KL----LFEQFARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGITLN 502 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 LK + E S+++ LEE IY +G KFNL+SPKQLG++LF KL P KTKTG + Sbjct: 503 AQTLKDMGTEFSQSIKVLEEKIYGEAGVKFNLNSPKQLGEVLFEKLNLPVIKKTKTG-YS 561 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL-----PNHINKRTQRVHTFYSLA 706 T+ L ++ +PI+++IL++R +K+ STY L P+H ++HT Y Sbjct: 562 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTYVVGLLKAQMPDH------KIHTRYLQT 614 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKIT 765 T TGRL+S++PN+QNIP + D G+ IR+AF+ S P ++ S+DYSQIELR+L+HI+ Sbjct: 615 LTQTGRLSSVDPNMQNIPAR-DEGKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDE 673 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 + Q F++ +DIH A +IFG++ ++V+P MRR AK NF I+YGIS + LA + I Sbjct: 674 NMQQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYGISDYGLAQNIGIS 733 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R +A +I YF ++P +H+Y+E R++GYVET+F RR + +I+S ++R E Sbjct: 734 RKQAKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAE 793 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R A+N PIQGSAADI + AMI + K+L++ L KMLLQ+HDEL+FE P E+ Q++ Sbjct: 794 RTAMNTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLV 853 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972 M+ A ++L VPLKV W Sbjct: 854 PKIMDSA----VSLAVPLKVESHYGPTW 877 Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 110/299 (36%), Positives = 162/299 (54%), Gaps = 17/299 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + L L+DG+S +RAF+A L R DGL NAI F NML +L++ + ++ Sbjct: 1 MTSQTKLLLIDGNSIAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKSVKPDAA 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 V FD TFR Y DYK+ R K P LL QLP ++ GI E++ +EA Sbjct: 61 L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIQHYELKDYEA 116 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T A+ G+ TI++ D+DL QL + T + TVK E EHV +K G Sbjct: 117 DDIIGTMAKRADDAGWQTTIVTGDRDLTQLTTDQTTVQVTVKGVNELEAYTPEHVKEKLG 176 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P +++ L+ L GD+ DN PG+ +G KTA LL++YG++EN+ N +K K +EN+ Sbjct: 177 ITPTQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLKQYGSIENLYANIDAMKTSKMKENL 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKLINRVA 289 + + A LS++L + D P+TI L + NGP +L F + L+ ++ Sbjct: 237 INDKDKAYLSKQLATIDRDAPVTIDLADV---KYNGPDLAKLRDFYTKMNMNSLLKKIG 292 >gi|116333679|ref|YP_795206.1| DNA polymerase I [Lactobacillus brevis ATCC 367] gi|116099026|gb|ABJ64175.1| DNA polymerase I [Lactobacillus brevis ATCC 367] Length = 886 Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 201/527 (38%), Positives = 312/527 (59%), Gaps = 18/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK EN K + K + L R +++ G + D++L SY+L++ +S+D+ +A + Sbjct: 367 LKGLLENADIAKQVFDAKRTFVALQRLAVTLTGVDCDLLLGSYLLNTYDNSNDLGRLAME 426 Query: 512 WLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + T +++ K K++IP D D H + I QL + L + Sbjct: 427 HGYHQVATDEDVYGKGAKAAIPDD---DDVFFSHLARKARAIEQLRPQIFKDLADNEQTD 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +Y ++ PM V+++ME+ GI ++ L+ + ++ ++ L +E+ IY+ +GE+FN+ SPK Sbjct: 484 LYRDIELPMAFVLARMEVAGITVEASELEAMGSKFTEQLAEIEQTIYNEAGEEFNIGSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF K+ P KTKTG + T LE++ + PI +NIL++R+++KI+STY + Sbjct: 544 QLGHILFEKMGLPVIKKTKTG-YSTAVGVLEKL-AAEAPIAENILKYRKIAKIQSTYVEG 601 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L I+ Q+VHT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ S P ++ Sbjct: 602 LLKVIHPDDQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRNEEGRAIRKAFVPSHPDWEIF 661 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S+DYSQIELR+LAH++ + + F DIH A IF + E+V+P +RR AK +N Sbjct: 662 SSDYSQIELRVLAHMSHDKQMQEAFREGQDIHAATARRIFKMGPDEEVTPNIRRQAKAVN 721 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS F L+ + I R +A +I YF +PG+ Y E+ + GYVETI R Sbjct: 722 FGIVYGISDFGLSQNIGISRKQAKAFIDTYFEEYPGVKAYTERMVQQAHELGYVETIAHR 781 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +INS + R+ ER A+N PIQGSAADI + AMI + ++L+D + MLLQ+H Sbjct: 782 RRYLPDINSRNFNQRSFAERTAMNTPIQGSAADIIKIAMIRMEQALKD--MQATMLLQVH 839 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL+FE P EI T ++++ M+ A I L +PLKV W Sbjct: 840 DELIFEAPASEIDTLAKLVPSVMDSA----IELEIPLKVESHYGPTW 882 Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 100/318 (31%), Positives = 169/318 (53%), Gaps = 15/318 (4%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRK---HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 E L L+DG+S ++AF+A K +GL NAI GF ML +L+ + +H Sbjct: 3 EKRLLLIDGNSVTFKAFFALYTALGKFTNSEGLHTNAIYGFNTMLETMLKVVQP----TH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR ++Y +YK R K L Q P V+ A GI E+ +EADDI Sbjct: 59 ALVAFDAGKTTFRTKMYDNYKGGRAKTAPELSEQFPYVKELLAARGIQTYELANYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIP 175 I T AE++GF TI++ D+DL QL T + K+ +IEH V +K G+ Sbjct: 119 IGTLAKQAEEQGFTTTIVTGDRDLTQLADDHTTV-SISKKGVSEIEHYTPAYVKEKMGVT 177 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ ++ L GD+ DN PG+ G+G K A L+ YG+++ I + + I KK +E+++ Sbjct: 178 PAQIIDIKGLQGDNSDNYPGVTGVGPKRAVELVSTYGSIDGIYDHLADITAKKLKEHLIA 237 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 + A L+++L ++ D P+ + L+ + + +L+ F + + F + +++++ + Sbjct: 238 DHDQALLAKQLATIKRDAPVEKTVSELVYKGDDYDQLVPFYQKMNFNQFLSKMSIDGEAP 297 Query: 296 AA--NIEPVVLDINTTEN 311 A +E V + T +N Sbjct: 298 TATPGLEEVTYTVLTADN 315 >gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT] gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT] Length = 878 Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 203/556 (36%), Positives = 330/556 (59%), Gaps = 41/556 (7%) Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 E +F+ +S + +D G + LK FENE K+ H+ K +VL ++ I+ + Sbjct: 356 EEVFV-ISANEIKDKDGA-----KYFEILKNLFENEKIKKVCHDSKKVYVVLKKHNIAAK 409 Query: 485 GFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK---ISDSQVQ- 539 D + +Y+L +S + + + ++ L + K+ +I I++ I D + Sbjct: 410 NIAFDTKIAAYLLQPSKSDYMLKDLIEEMLLLSLKD-----DDNIKINETYYIKDVYEKL 464 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 E I+ SN+ E+LL+ E P+I+V++ ME G ++D++ L ++ Sbjct: 465 EKDIKKSNM--------------EELLYTVEL---PLIEVLASMECEGFRVDENRLTEIG 507 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 + K + +LE+ I++L+ E+FN+ SPKQLG ILF KL P KTKTG + T A+ LE+ Sbjct: 508 EKFKKEIETLEKEIHELADEEFNIKSPKQLGKILFEKLDLPVIKKTKTG-YSTNAEVLEK 566 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + +PII+ I+E+RQ++K+ STY + L N I++ ++H+ ++ T TGRL+S EPN Sbjct: 567 LK-DSHPIIEKIIEYRQITKLDSTYVEGLKNVIDEDA-KIHSSFNQTVTTTGRLSSTEPN 624 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIH 778 LQNIPIK ++G++IR+ F+ + +I SADYSQIELRIL+HIA L F++ DIH Sbjct: 625 LQNIPIKHEMGREIRKVFVPNNDESVIFSADYSQIELRILSHIADDEKLIDAFKHHKDIH 684 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 + A+E+F V I++V+P MR +AK +NF I+YGI F L+ + + R EA +YI YF R Sbjct: 685 TITASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDTYFSR 744 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +P + +YI++ + +G+V TI R+ + EI S +R ER A+N PIQGSAAD Sbjct: 745 YPNVKKYIDEIISKAEVDGFVTTILNRKRYIPEIQSRNKIVRGFGERLAMNTPIQGSAAD 804 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I + AM+ V+ L++ L + ++LQ+HDEL+ V ++E+ +++V ME + L Sbjct: 805 IIKLAMVEVYNELKNRNLKSTLILQVHDELILNVYKDELEEVKEMVVDKMENV----MKL 860 Query: 959 RVPLKVNIKVSNNWQE 974 VPL+ ++ V W E Sbjct: 861 LVPLEADVNVGETWYE 876 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/327 (38%), Positives = 187/327 (57%), Gaps = 25/327 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L ++DG S +YRAF+A P L+ K +G+ NAI GF ML K+ KE I Sbjct: 1 MNKE-RLLILDGHSLMYRAFFALPPLTNK-EGIHTNAIYGFIKMLLKM-----KEEIKPD 53 Query: 61 FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + V FD A TFR++ Y +YKA R K+P+ L Q P+V+ I EI+GFEADD Sbjct: 54 YIVTTFDKKAPTFRHKEYEEYKAGRAKMPDELNEQFPIVKDILNKLAINIFEIEGFEADD 113 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175 +I T + AE++G V I++ D+D +QL + + K +E D +I+++G+ Sbjct: 114 LIGTLSKFAEEKGIEVYIVTGDRDALQLATDNVRVVINKKGMSEKEIYDKNKMIEEYGVT 173 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P + + ++ L GD DNIPG+PGIG KTA L++EYG++EN+L N I KK ++N+++ Sbjct: 174 PTEFIDVKGLMGDKSDNIPGVPGIGNKTALKLIKEYGSIENVLENVENISGKKMKQNLID 233 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINRVATTY 292 Y E A LS+KL + DVPI I L+ + + D G RL+ ++L F L++ + Sbjct: 234 YREQAILSKKLATICKDVPIEINLDEIKSKEDYDIQGVRLL--FQSLGFKSLLDNIGDNE 291 Query: 293 DCDA--------ANIEPVVLDINTTEN 311 D ++I +INT EN Sbjct: 292 GLDKEDEAEVKESDINIKSTNINTIEN 318 >gi|332638560|ref|ZP_08417423.1| DNA polymerase I [Weissella cibaria KACC 11862] Length = 904 Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 201/513 (39%), Positives = 311/513 (60%), Gaps = 19/513 (3%) Query: 468 NIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL-K 522 N K + L R G+++ D++L++Y+LD+ +++D+ ++A + Y T +E+ K Sbjct: 399 NAKGTIVALRRLGLTLPNVAFDLLLVAYLLDANDNNNDMGALAHENGYYAVRTDEEVYGK 458 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K +IP +D + EH + I L L KL + +Y+ ++ P+ V++ Sbjct: 459 GAKFAIPE---ADEDLFEHLGRKAMAIQYLKDPLMAKLTEHEQTQLYDDIELPLTYVLAD 515 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME TGI +D + L ++ +++++ L LE+ IY +G +FN+ SPKQLG +LF ++ + Sbjct: 516 MEATGITVDANTLLEMRSKLTERLAELEQTIYQQAGHEFNVQSPKQLGVVLFEEMGYTPI 575 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T+ + LEQ+ GD P++ +IL +RQ++KI+STY + L I+ +VHT Sbjct: 576 KKTKTG-YSTSVEVLEQM--GDVPLVASILAYRQIAKIQSTYVEGLLRVIHGSDSKVHTR 632 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK--KLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G++IR+AF+ P K +++SADYSQIELR+LAH Sbjct: 633 YLQTLTQTGRLSSVDPNLQNIPVRIEEGRRIRKAFV-PREKGWRILSADYSQIELRVLAH 691 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I L + F N DIH A IFG+ E V +RR AK +NF I+YGIS F LA Sbjct: 692 ITGDKHLQEAFINGEDIHAATARRIFGIGPDETVDGNIRRQAKAVNFGIVYGISDFGLAK 751 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 + + R +A I YF ++PG+ + E+ R+ GYVETI RR + +I + ++ Sbjct: 752 NIGVSRKQAKQIIDTYFEQYPGVKTWSEEIIAAAREQGYVETIAHRRRYLPDIKAKNFNL 811 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER A+N+PIQGSAADI + AMI++ K+L D L KMLLQ+HDEL+FE PE E+ Sbjct: 812 RSFAERTAMNSPIQGSAADIIKIAMINMEKALRDAGLQAKMLLQVHDELIFEAPESELPI 871 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ M+ A + L VPL V W Sbjct: 872 LHELVPRVMDSA----MQLDVPLIVASHEGETW 900 Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 161/294 (54%), Gaps = 18/294 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSR-----KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L L+DG+S +RAF+A L+++ H+GL NA+ GF N+L ++ + K +A Sbjct: 6 LLLIDGNSLAFRAFFA--LINQVDRFVNHEGLHTNALVGFNNLLDGIV-DPFKPDLA--- 59 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V +D TFR + DYK NR K P+ L+ Q +R + GI + E+ G+EADDII Sbjct: 60 LVAWDAGKTTFRTGKFDDYKGNRDKTPQELVEQFEPLRKMVELHGIKSYELPGYEADDII 119 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIP 175 T + E G+AVTI++ D+D+ QLV+ ++ T K+ +I+H G+ Sbjct: 120 GTTARMGEAAGYAVTIVTGDRDMTQLVTDDVSVWVT-KKGISEIDHYTPAMVAEVYDGLT 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P ++V ++ L GD+ DN PG+ GIG KTA L++EY + + +K K++E ++ Sbjct: 179 PAQIVEVKGLQGDTSDNYPGVAGIGPKTAIKLMKEYHTIPEMYERIDEMKTSKQKEKLIA 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 E A LSR L +RT+ P+ L L + +I F + L+F + ++A Sbjct: 239 GKEDALLSRDLATIRTNAPVDYDLSSLTYNGPDYEAIIPFYQHLDFKAQLVKLA 292 >gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] Length = 866 Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 208/533 (39%), Positives = 311/533 (58%), Gaps = 39/533 (7%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509 L+ FE E KI H K LH G+ D+ L +Y+L S +D+AS+A Sbjct: 359 LACFSSLFEKEDIQKIVHEYK---PFLH-CGMGFTPCFDVSLAAYLLAPAASQYDMASLA 414 Query: 510 QKWL------SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 +L R+ L + ++ ++KI + +L+ +L + Sbjct: 415 ATYLPSVNAAEAAREGALGAAWCAVLLEKI-------------------YPVLKERLEEQ 455 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 +LL +YE ++ P+++V++ ME GI +D+ L + S EIS + L IYDL+ +FN+ Sbjct: 456 QLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREISAQIAHLTAEIYDLAKGEFNI 515 Query: 624 SSPKQLGDILFTKLKF--PSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 +SPKQL +LF +L P G K TKTG + T A+ LE + D+PI++ IL +R +K+ Sbjct: 516 NSPKQLSAVLFERLDLQPPMGTKKTKTG-YSTNAEVLEAMRF-DHPILEKILSYRFWTKL 573 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-IS 739 +STY DS+ I+ RT+R+HT ++ T TGRL+S EPNLQNIP++T+ G++IR F S Sbjct: 574 QSTYLDSMEGLISPRTKRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEEGRQIRALFEPS 633 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 L+SADYSQIELRILAH+++ + F + DIH A+E+FGV +E V+ +RR Sbjct: 634 DGYDALMSADYSQIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRR 693 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK +NF I+YGIS + L+ L I R EAADYI YF + GI +I+ ++G+V Sbjct: 694 KAKAVNFGIVYGISDYGLSKDLHISRQEAADYIASYFAKCSGIKRFIDGVVEKAHKDGFV 753 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 TIFGRR I S + R + ER A+N PIQGSAADI + AMI H++L++ ++ Sbjct: 754 TTIFGRRRDLPAIKSSNYNQRTLAERMAMNTPIQGSAADIIKLAMIKTHRALQEGGFKSR 813 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +LLQ+HDELV E+ + E ++++ +ME + L VPL V+I NW Sbjct: 814 ILLQVHDELVLEIMQNEKEQVAELVRDAMENI----VQLSVPLSVDIHTGENW 862 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 110/284 (38%), Positives = 157/284 (55%), Gaps = 18/284 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 LVDGSS +YRAFYA PLL + DG NA+ GF NML KLL E + AV FD Sbjct: 7 LVDGSSLLYRAFYALPLL-QTADGAYTNAVYGFANMLQKLLN----EYAPDYLAVAFDKG 61 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFRNE++ YK R P L Q+P++ A G+P IE G+EADDI+ T A Sbjct: 62 KKTFRNEMFAAYKGTRKPTPPELSSQIPMLHEFLAALGVPLIEEAGYEADDILGTLAVKA 121 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--------EEKIDIEHVIKKWGIPPEKMV 180 +E V +++ D+D +QLV + T K +EK+ +E ++G PP+ ++ Sbjct: 122 AREDVDVLVVTGDRDALQLVRENIRVLFTRKGMTDLLLYDEKLFLE----EYGFPPKGLI 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++ L GD+ DNIPG+PGIG KTA LL + G+LE + + I KK +EN+ E A Sbjct: 178 DMKGLMGDASDNIPGVPGIGPKTAKKLLIDCGSLEGVYERLAEISGKKLKENLASNKEKA 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 LS+ L +R D+P+ + +++ G L +F + E L Sbjct: 238 FLSKDLATIRCDMPLAFAPDSYVMKP-RGDELQAFFQRYEMKSL 280 >gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV] gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV] Length = 881 Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 215/535 (40%), Positives = 314/535 (58%), Gaps = 31/535 (5%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQK 511 K+F EN LK+ ++ K K++L R GI + R D L Y+L S +++I +IA Sbjct: 363 FKEFLENTA-LKV-YDFKRSKVLLSRLGIELSRPAFDSRLAKYLL-STVDNNEIVTIAGL 419 Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + L+ K K ++P E AI S++ ++ +L+ + + LL Sbjct: 420 YGKTKLAEDEAVYGKGAKRALP----------EKAILLSHLARKVTVLIETEKPMTDLLR 469 Query: 568 VYERL------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 +++L ++P+ V+++MEI GI+++++ L+ + AE + L L + IYDL+GE+F Sbjct: 470 QHDQLNLLYEMEQPLAFVLAKMEIAGIKVERETLQTMQAENERILTRLTQEIYDLAGEEF 529 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 N++SPKQLG ILF KL P+ KT +TA D+ + PI++ IL++RQ++KI+ Sbjct: 530 NINSPKQLGGILFEKLGLPTSFTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQIAKIQ 589 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP- 740 STY L + I ++HT Y T TGRL+S++PNLQNIPI+ + G+ IR+AF+ Sbjct: 590 STYVMGLQDWI-LADGKIHTRYLQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFVPEW 648 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRR 799 L+S+DYSQIELR+LAHI+ L + F + DIH A +F + E V+P RR Sbjct: 649 EDSVLLSSDYSQIELRVLAHISGDKHLIEAFRHGADIHTSTAMRVFNIERPEDVTPNDRR 708 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 +AK +NF ++YGIS F LA L I R EA YI YF R+PGI Y+E R GYV Sbjct: 709 NAKAVNFGVVYGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDKGYV 768 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 ET+F RR +INS ++R ER AIN+PIQGSAADI + AMI + ++L D T+ Sbjct: 769 ETLFHRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLGQALIDGNFKTR 828 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 MLLQ+HDE+V EVPE E+T ++ ME A I L VPLK + W E Sbjct: 829 MLLQVHDEIVLEVPENELTAIKALVKDIMESA----IELSVPLKADESAGKTWYE 879 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 115/296 (38%), Positives = 160/296 (54%), Gaps = 19/296 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+ +N L L+DGSS +RAF+A L + D GL NAI GF ML L++ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPSGLHTNAIYGFHLMLNHLIERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYK R K PE QLP +R GI ++ Sbjct: 57 ---PTHILVAFDAGKTTFRTEMYADYKGGRAKTPEEFREQLPFIREMLDKLGIRYYDLDQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AE + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAENTAVPYDVTIVSGDKDLIQLADDNTIVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI P + + L+AL GDS DNIPG+ IG KT LL +YG+LE I N ++KQ K Sbjct: 174 MEKMGITPTQFIDLKALMGDSSDNIPGVTKIGEKTGLKLLLKYGSLEGIYDNIDQMKQSK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 +EN++ + A LSR L + T PI I LE ++ + N +L F + F + Sbjct: 234 MKENLINDKDIAFLSRTLATIDTQAPIEIGLEDILYQGPNIKQLSRFYDEMGFKQF 289 >gi|283770754|ref|ZP_06343646.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19] gi|283460901|gb|EFC07991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19] Length = 876 Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 208/539 (38%), Positives = 314/539 (58%), Gaps = 37/539 (6%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 E++S+L EN + K+ ++ K + HR GI ++ DIML SY++D R+ D+ Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQ 412 Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+ + S+ + ++ K +K +P D + + V I +P + Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462 Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +K L Y + L+ P+ ++S+ME GI D L+++ EI + L L NI+D Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDA 522 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +GE FN++SPKQLG +LF L+ P KTKTG + T LEQ+ G++PII ILE+RQ Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAIDVLEQLQ-GEHPIIDYILEYRQ 580 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 LSK++STY + L I+ QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+A Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639 Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 F PT K ++SADYSQIELR+LAHI + + + F N DIH A ++FGV ++V Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 MRR AK +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET+ RR + +I S ++R +R A+N PIQGSAADI + AM+ + +++ Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAKRTAMNTPIQGSAADIIKLAMVKFAQKMKE 817 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 K+LLQ+HDEL+FEVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L+ + + + A Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASGEDA 295 Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333 IE +++ T K AI E+D R+ +K S F+ Sbjct: 296 IEKTFEIETSFDNVDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341 >gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] Length = 867 Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 208/533 (39%), Positives = 311/533 (58%), Gaps = 39/533 (7%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509 L+ FE E KI H K LH G+ D+ L +Y+L S +D+AS+A Sbjct: 360 LACFSSLFEKEDIQKIVHEYK---PFLH-CGMGFTPCFDVSLAAYLLAPAASQYDMASLA 415 Query: 510 QKWL------SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 +L R+ L + ++ ++KI + +L+ +L + Sbjct: 416 ATYLPSVNAAEAAREGALGAAWCAVLLEKI-------------------YPVLKERLEEQ 456 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 +LL +YE ++ P+++V++ ME GI +D+ L + S EIS + L IYDL+ +FN+ Sbjct: 457 QLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREISAQIAHLTAEIYDLAKGEFNI 516 Query: 624 SSPKQLGDILFTKLKF--PSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 +SPKQL +LF +L P G K TKTG + T A+ LE + D+PI++ IL +R +K+ Sbjct: 517 NSPKQLSAVLFERLDLQPPMGTKKTKTG-YSTNAEVLEAMRF-DHPILEKILSYRFWTKL 574 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-IS 739 +STY DS+ I+ RT+R+HT ++ T TGRL+S EPNLQNIP++T+ G++IR F S Sbjct: 575 QSTYLDSMEGLISPRTKRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEEGRQIRALFEPS 634 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 L+SADYSQIELRILAH+++ + F + DIH A+E+FGV +E V+ +RR Sbjct: 635 DGYDALMSADYSQIELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRR 694 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK +NF I+YGIS + L+ L I R EAADYI YF + GI +I+ ++G+V Sbjct: 695 KAKAVNFGIVYGISDYGLSKDLHISRQEAADYIASYFAKCSGIKRFIDGVVEKAHKDGFV 754 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 TIFGRR I S + R + ER A+N PIQGSAADI + AMI H++L++ ++ Sbjct: 755 TTIFGRRRDLPAIKSSNYNQRTLAERMAMNTPIQGSAADIIKLAMIKTHRALQEGGFKSR 814 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +LLQ+HDELV E+ + E ++++ +ME + L VPL V+I NW Sbjct: 815 ILLQVHDELVLEIMQNEKEQVAELVRDAMENI----VQLSVPLSVDIHTGENW 863 Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 110/284 (38%), Positives = 157/284 (55%), Gaps = 18/284 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 LVDGSS +YRAFYA PLL + DG NA+ GF NML KLL E + AV FD Sbjct: 8 LVDGSSLLYRAFYALPLL-QTADGAYTNAVYGFANMLQKLLN----EYAPDYLAVAFDKG 62 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFRNE++ YK R P L Q+P++ A G+P IE G+EADDI+ T A Sbjct: 63 KKTFRNEMFAAYKGTRKPTPPELSSQIPMLHEFLAALGVPLIEEAGYEADDILGTLAVKA 122 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--------EEKIDIEHVIKKWGIPPEKMV 180 +E V +++ D+D +QLV + T K +EK+ +E ++G PP+ ++ Sbjct: 123 AREDVDVLVVTGDRDALQLVRENIRVLFTRKGMTDLLLYDEKLFLE----EYGFPPKGLI 178 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++ L GD+ DNIPG+PGIG KTA LL + G+LE + + I KK +EN+ E A Sbjct: 179 DMKGLMGDASDNIPGVPGIGPKTAKKLLIDCGSLEGVYERLAEISGKKLKENLASNKEKA 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 LS+ L +R D+P+ + +++ G L +F + E L Sbjct: 239 FLSKDLATIRCDMPLAFAPDSYVMKP-RGDELQAFFQRYEMKSL 281 >gi|227524689|ref|ZP_03954738.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] gi|227088173|gb|EEI23485.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] Length = 883 Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 195/504 (38%), Positives = 314/504 (62%), Gaps = 14/504 (2%) Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDK 532 L+R I+++ + D++L+SY+L++ +S+D+ ++A+ + + E + + + ID Sbjct: 387 LYRSSITLQNVDFDMLLVSYLLNTTNNSNDVGTVAKLHGFANIKTDEEVYGKGAKKKIDP 446 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + +H + + I QL + L +Y ++ + V+++MEI GI+++ Sbjct: 447 -EVPEFFDHIVHKAKAIDQLHNDMFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNP 505 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 + L+Q+ ++ + L +E+ I+ +GE+FN+ SPKQLG ILF K++ P KTKTG + T Sbjct: 506 ETLEQMGSKFKERLAEIEQTIFQEAGEEFNIGSPKQLGHILFEKMRLPILKKTKTG-YST 564 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE++ D PI++N+L +RQ+SK++STY D L I++ +VHT Y T TGR Sbjct: 565 SVDVLEKL-APDAPIVQNVLNYRQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGR 623 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 L+S++PNLQNIP++++ G+ IR+AFI S ++ S+DYSQIELR+LA I + + F Sbjct: 624 LSSVDPNLQNIPVRSEEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAF 683 Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 DIH A IFG+ + + V+P++RR AK +NF I+YGIS + LA I R +A Sbjct: 684 REGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDYGLANNTGISRKQAHQ 743 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I+RYF +PG+ +Y E F + +GYVETI RR + +I+S ++R+ ER A+N Sbjct: 744 FIQRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRRYLPDIHSRNFNLRSFAERTAMNT 803 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI + AMI++ ++L+ L T+MLLQ+HDEL+FEVP +E+ T ++I M+ Sbjct: 804 PIQGSAADIIKIAMINMDEALK--PLKTRMLLQVHDELIFEVPNDEMETVEKLIPKVMDS 861 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A I L +PLKV W E Sbjct: 862 A----IRLNIPLKVESHWGKTWYE 881 Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 105/291 (36%), Positives = 157/291 (53%), Gaps = 12/291 (4%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S ++AFYA L R GL +AI GF ML K+LQ + I V Sbjct: 5 LLLIDGNSIAFKAFYALYNSLERFTNSSGLHTSAIYGFNRMLDKVLQEEKPTDIL----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR +++ DYKANR K P L Q P +R +A GI + E+ +EADDII T Sbjct: 61 AFDAGKTTFRTKMFSDYKANRAKTPTELSEQFPFIRELVKARGISSYELPDYEADDIIGT 120 Query: 124 YTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEK 178 AE +G + V I++ D+DL QL S T + T EK +HV +K G+ P + Sbjct: 121 LAKEAEDKGDYQVVILTGDRDLTQLTSDKTTVQISKKGTTDLEKYTPQHVEEKLGVKPSQ 180 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ + L GD+ DN PG+ +G KTA L+Q++G++ENI N + K +E++L + Sbjct: 181 IIDFKGLKGDNSDNYPGVTKVGDKTAMKLVQQFGSIENIYSNIDHVSGKMLKEHLLNDKD 240 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A + L ++ D PI + L+ L E N +L F + + F ++ + Sbjct: 241 KAERGKVLATIKRDAPIKVSLDDLKYEGDNLDKLTDFYERMGFKSFLSNLG 291 >gi|315658046|ref|ZP_07910919.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590] gi|315496936|gb|EFU85258.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590] Length = 877 Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 203/528 (38%), Positives = 311/528 (58%), Gaps = 21/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L ++ EN+H KI + K + HR I+++ + D+ML SY+++ R+ D+ S+ Sbjct: 359 LIEWLENDHNNKIVFDAKKTYVAAHRLEINLQHIDFDVMLASYIINPSRTIEDVQSVVSY 418 Query: 512 W-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + ++ + +I K +K +P+D + ++ H I L+ L + Sbjct: 419 YNQNFVKSDIAVYGKGKKRQVPLDDV----LEVHIAAIMQAIYNCKPLMSDILSDHNQMD 474 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + L+ P+ +++ ME TGI D + LK++ E+ + L +L IY+ +GE FN++SPK Sbjct: 475 LLNNLELPLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAAGESFNINSPK 534 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF LK P KTKTG + T LEQ+ G +PII ILE+RQLSK++STY + Sbjct: 535 QLGIVLFETLKLPIIKKTKTG-YSTAVDVLEQLQ-GKHPIIDYILEYRQLSKLQSTYVEG 592 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L I+ QR+HT ++ TGRL+S++PNLQNIPI+ + G+KIR+AF PT Sbjct: 593 LQKVISD-DQRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAF--KPTSDDYV 649 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 ++SADYSQIELR+LAH+ + L + F + DIH A ++FGV ++V+ MRR AK + Sbjct: 650 ILSADYSQIELRVLAHMTQDESLKEAFIHGDDIHAATAMKVFGVEKDQVNDLMRRQAKAV 709 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ + NGYVET+ Sbjct: 710 NFGIVYGISDYGLSQNLGITRKKAKAFIDDYLASFPGVKQYMTDIVKDAKANGYVETLLH 769 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I S ++R+ ER A+N PIQGSAADI + AM+ K++ + K+LLQ+ Sbjct: 770 RRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVQFDKNVRETNYHAKLLLQV 829 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FEVP+ E+ S+ + M+ A + L VPL V+ W Sbjct: 830 HDELIFEVPKSEVQDFSEFVEEIMDNA----LTLAVPLLVDSSYGATW 873 Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 108/292 (36%), Positives = 165/292 (56%), Gaps = 13/292 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S +RAFYA PLLS K G+ NAI GF +L K+L KE +HF V FD Sbjct: 4 LVLIDGNSLSFRAFYALPLLSNKA-GIHTNAIYGFAMLLEKIL----KEEQPNHFLVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E Y +YK R P L Q P +R A+ I E++ +EADDII T + Sbjct: 59 AGKTTFRHEKYSEYKGGRQSTPPELSEQFPYIRQLLDAYHIKYYELENYEADDIIGTLSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEKMV 180 AE G II+ D+DL QL + +Y T K+ D++H + +K+ G+ P++++ Sbjct: 119 QAEASGLETIIITGDRDLTQLATDHVTIYYT-KKGVTDVDHYTPEFIAEKYNGLLPKQII 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++ L GD+ DNIPG+ G+G KTA LL ++ ++E + + + KK +EN+ A Sbjct: 178 DMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFHSVEGVYNHLDEVSGKKLKENLENSKADA 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPR-LISFLKALEFTKLINRVATT 291 +S+ L + D PI + L+ I+ D N + I + LEF +L+N + ++ Sbjct: 238 FMSKDLATINCDSPIKVNLKDTIMGDLNDNKDKIELFQKLEFKQLLNDIDSS 289 >gi|227513546|ref|ZP_03943595.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] gi|227083419|gb|EEI18731.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] Length = 883 Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 195/504 (38%), Positives = 314/504 (62%), Gaps = 14/504 (2%) Query: 476 LHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDK 532 L+R I+++ + D++L+SY+L++ +S+D+ ++A+ + + E + + + ID Sbjct: 387 LYRSSITLQNVDFDMLLVSYLLNTTNNSNDVGTVAKLHGFANIKTDEEVYGKGAKKKIDP 446 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + +H + + I QL + L +Y ++ + V+++MEI GI+++ Sbjct: 447 -EVPEFFDHIVHKAKAIDQLHNDMFKALDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNP 505 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 + L+Q+ ++ + L +E+ I+ +GE+FN+ SPKQLG ILF K++ P KTKTG + T Sbjct: 506 ETLEQMGSKFKERLAEIEQTIFQEAGEEFNIGSPKQLGHILFEKMRLPILKKTKTG-YST 564 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE++ D PI++N+L +RQ+SK++STY D L I++ +VHT Y T TGR Sbjct: 565 SVDVLEKL-APDAPIVQNVLNYRQISKLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGR 623 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 L+S++PNLQNIP++++ G+ IR+AFI S ++ S+DYSQIELR+LA I + + F Sbjct: 624 LSSVDPNLQNIPVRSEEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAF 683 Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 DIH A IFG+ + + V+P++RR AK +NF I+YGIS + LA I R +A Sbjct: 684 REGEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDYGLANNTGISRKQAHQ 743 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I+RYF +PG+ +Y E F + +GYVETI RR + +I+S ++R+ ER A+N Sbjct: 744 FIQRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRRYLPDIHSRNFNLRSFAERTAMNT 803 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAADI + AMI++ ++L+ L T+MLLQ+HDEL+FEVP +E+ T ++I M+ Sbjct: 804 PIQGSAADIIKIAMINMDEALK--PLKTRMLLQVHDELIFEVPNDEMETVEKLIPKVMDS 861 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A I L +PLKV W E Sbjct: 862 A----IRLNIPLKVESHWGKTWYE 881 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 157/291 (53%), Gaps = 12/291 (4%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S ++AFYA L R GL +AI GF ML K+LQ + I V Sbjct: 5 LLLIDGNSIAFKAFYALYNSLERFTNSSGLHTSAIYGFNRMLDKVLQEEKPTDIL----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR +++ DYK NR K P L Q P +R +A GI + E+ +EADDII T Sbjct: 61 AFDAGKTTFRTKMFSDYKGNRAKTPTELSEQFPFIRELVKARGISSYELPDYEADDIIGT 120 Query: 124 YTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEK 178 AE +G + V I++ D+DL QL S T + T EK +HV +K G+ P + Sbjct: 121 LAKEAEDKGDYQVVILTGDRDLTQLTSDKTTVQISKKGTTDLEKYTPQHVEEKLGVKPSQ 180 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DN PG+ +G KTA L+Q++G++ENI N + K +E++L + Sbjct: 181 IIDIKGLKGDNSDNYPGVTKVGDKTAMKLVQQFGSIENIYSNIDHVSGKMLKEHLLNDKD 240 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A + L ++ D PI + L+ L E N +L F + + F ++ + Sbjct: 241 KAERGKVLATIKRDAPIKVSLDDLKYEGDNLDKLTDFYERMGFKSFLSNLG 291 >gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] Length = 867 Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 205/551 (37%), Positives = 317/551 (57%), Gaps = 43/551 (7%) Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE- 487 ID +S+DS +E L LK E+++ K+ H+ K L++ I ++GF+ Sbjct: 349 IDFKDISSKDS-------EEALKVLKNLMEDDNVKKVIHDGKNFVTFLNKNQIEIKGFDF 401 Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D + +Y++DS +S ++I + + I D+ E + N Sbjct: 402 DTAIAAYLIDSSKSKYEILELVNHY--------------------IGDNPNSEGS--NIK 439 Query: 548 VILQLWL-----LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 IL +L L+ L E + +Y ++ P+I V+S ME G I+Q +L ++ + Sbjct: 440 AILCSYLPMVYEKLKENLHKENMDQLYYEVEHPLIYVLSSMESIGFNINQGMLDELQTKF 499 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 K + ++ IY+L+ E+FN+SSPKQLG ILF KL P KTKTG + T + LE++ Sbjct: 500 KKEIDKTQKEIYELADEEFNISSPKQLGKILFEKLDLPVIKKTKTG-YSTNQEVLEKL-M 557 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 + II I+ +RQ++KI STY + L N +++ R+H+ ++ T TGRL+S EPNLQN Sbjct: 558 NKHDIIPKIMYYRQITKINSTYVEGLKNVVDE-DGRIHSNFNQTVTTTGRLSSTEPNLQN 616 Query: 723 IPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 IPIK ++G++IR+ FI T L+S DYSQIELR+LAHIA + FE+ DIH Sbjct: 617 IPIKYEMGREIRKVFIPMEETDILVSCDYSQIELRVLAHIAGDENMIDAFEHHSDIHTKT 676 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A+E+F V I +V+ MR AK +NF I+YGIS F LA L+I + EA +Y+ Y R+P Sbjct: 677 ASEVFKVPIGEVTSLMRSRAKAVNFGIVYGISAFSLAEDLKITKKEAEEYMSIYLERYPK 736 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I EY+E + ++ GYV TI RR EI S ++ + +R A+NAPIQGSAADI + Sbjct: 737 IKEYLENVVDEAKEKGYVLTILNRRRFIPEIKSSNKIVKALGDRLAMNAPIQGSAADIIK 796 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AM++V+ L + +L ++++LQ+HDEL+ V ++E ++ + ME A I L+V Sbjct: 797 LAMVNVYNKLNEKELKSELILQVHDELILNVKKDEFEEVKNLVAYEMENA----IKLKVA 852 Query: 962 LKVNIKVSNNW 972 L V++ + W Sbjct: 853 LDVDVNFGDTW 863 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 101/260 (38%), Positives = 153/260 (58%), Gaps = 9/260 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D +S + RAFYA P L+ DG+ NAI GF NML K+ +SI + FD Sbjct: 4 LLILDSNSLMNRAFYALPPLTN-SDGINTNAIYGFINMLLKMKDEINPDSIIA----TFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y +YKA R K+P L Q P+++ + GI E++GFEADD+I T + Sbjct: 59 LKAPTFRHKEYSEYKAGRNKMPPELAEQFPIIKELFKLMGIKIFEVEGFEADDLIGTVSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCL 182 AE V +++ D+D +QL S T + T V E + D E + ++ + PE+ + + Sbjct: 119 FAEDNNAEVFVVTGDRDALQLASEKTKIIITKKGVSETAVYDKESFMDEFEVTPEQFIDV 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+PG+G KTA L++EYG++E ++ N +I KK +EN+ E A Sbjct: 179 KGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEKVIKNIDKISGKKLKENLENNVEQAIF 238 Query: 243 SRKLVMLRTDVPITIPLEHL 262 S+KL + +VPI + LE + Sbjct: 239 SKKLATIMREVPIELNLEDI 258 >gi|283769054|ref|ZP_06341960.1| DNA-directed DNA polymerase [Bulleidia extructa W1219] gi|283104411|gb|EFC05788.1| DNA-directed DNA polymerase [Bulleidia extructa W1219] Length = 862 Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 193/513 (37%), Positives = 308/513 (60%), Gaps = 17/513 (3%) Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521 + + ++IK + +L + GI + +D+M+ + ++DS +S +W R E + Sbjct: 365 YRRTTYDIKRNAHLLEKNGIYLNFSDDVMIYTSLVDSTITSFKKLKEKSEWQETIRYEEV 424 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 ++ + I +Q A N+I Q+ PKL L+ +Y ++ P++ ++ Sbjct: 425 YKKE-----ELIEKNQAAYCASVLRNLI-QVDQEYYPKLKEMNLISLYRDVELPLVTILK 478 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME GI+ ++ +L ++ + LE+ IY + G +FNL+SPKQL +L+ +L+ Sbjct: 479 DMEQKGIRCEEKVLDHIAEGTLAKIQELEKAIYKVVGHEFNLNSPKQLAVVLYDELQILK 538 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 G K T A +LE+I G ++ +IL +R+ SK+ STYA+ L +I + ++HT Sbjct: 539 GKKRSTA-----AGELEKIQ-GLYTVVDDILAYRKYSKLYSTYAEGLKKYI-QADGKIHT 591 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 Y+ A+T TGRL+S EPNLQNI ++ + G++IR+AF+ L+S+DY Q+ELRILAH+ Sbjct: 592 VYNQAATQTGRLSSSEPNLQNISVRDEEGREIRKAFLPEEGCVLVSSDYHQVELRILAHM 651 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 AK+ L + F+N +DIH A ++F ++E+V+P RR AKT+NF I+YGIS F LA+QL Sbjct: 652 AKVPNLIKAFQNEMDIHSQTAMDLFDCSLEEVTPLQRRQAKTVNFGIVYGISDFGLASQL 711 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 + R EA D+I++Y+ +P I Y+E +F ++NGYVET+ RR EI+ I+ Sbjct: 712 GVSRFEARDFIEKYYRVYPEIKTYMESVIHFCKENGYVETLCHRRREIPEIHDKNKQIQA 771 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ERAA+NAPIQG+AAD+ + AMI V + ++++ L KM+LQ+HDEL+F VP EE+ Sbjct: 772 FGERAAMNAPIQGTAADLIKLAMIQVREMIDENHLKAKMILQVHDELIFNVPLEEVEIMK 831 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 II ME A ++L VPL I + W E Sbjct: 832 TIIQKGMETA----MSLDVPLTSEISIGQTWYE 860 Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 109/298 (36%), Positives = 165/298 (55%), Gaps = 24/298 (8%) Query: 7 LFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L LVDG+S ++R +YAT P+ + G+P NA+ F ML K + R E++ Sbjct: 4 LLLVDGNSMLFRGYYATAYGRPM--KTSSGIPTNAVFAFATMLQKAIDIIRPEAVL---- 57 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR+E+Y YK R + PE L+PQ +VR +AFGI +E++ EADD++ Sbjct: 58 VAFDAGKHTFRHELYEGYKGGRKQAPEDLVPQFQMVRDYLEAFGIQWVEMENIEADDLVG 117 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEK 178 + + + F I+S+DKDL+QLV T + + E++ V + G+ P + Sbjct: 118 STA--KQNDCFKTVILSSDKDLLQLVDEKTTVMLMKKGITEMEEMTPSSVKEAMGVTPVQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILE 235 ++ L+ L GDS DNIPGIPGIG KTA LL+ YG +E +L + +K QKK E Sbjct: 176 IIDLKGLMGDSSDNIPGIPGIGQKTAVKLLETYGTVEEVLAHQGELKGALQKKVNEG--- 232 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 ++A LS++L ++TDV + + L +LI FL+ LE +L+ + T D Sbjct: 233 -HDSALLSKQLATIKTDVSLPYTISQLGFHPTY-DKLIQFLETLEMRQLVRQYHTLMD 288 >gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211] gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211] Length = 881 Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 219/538 (40%), Positives = 319/538 (59%), Gaps = 37/538 (6%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYVLDSGRSSHDIASIAQ 510 K+F N LK+ ++ K K++L R GI + F D L Y+L S +++IA+IA Sbjct: 363 FKEFLGNTA-LKV-YDFKRSKVLLSRLGIELSQPSF-DSRLAKYLL-STVDNNEIATIAN 418 Query: 511 KWLSYTR---KEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 + TR E++ K K ++P E AI S++ ++ +L+ + + L Sbjct: 419 LY-GKTRLVEDEVVYGKGAKRALP----------EKAILLSHLARKVTVLVETEKPMTDL 467 Query: 566 LHVYERL------DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 L +++L ++P+ V+++MEI GI+++++ L+ + E + L L + IYDL+GE Sbjct: 468 LRQHDQLNLLYEMEQPLAFVLAKMEIAGIKVERETLQTMQTENEEVLARLTQEIYDLAGE 527 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 +FN++SPKQLG ILF KL P+ KT +TA D+ + PI++ IL++RQ++K Sbjct: 528 EFNINSPKQLGGILFEKLGLPTSFTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQIAK 587 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 I+STY L + I ++HT Y T TGRL+S++PNLQNIPI+ + G+ IR+AF+ Sbjct: 588 IQSTYVMGLQDWI-LADGKIHTRYLQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFV- 645 Query: 740 PPTKK--LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQ 796 P K L+S+DYSQIELR+LAHI+ L + F + DIH A +FG+ E V+P Sbjct: 646 PEWKDSVLLSSDYSQIELRVLAHISGDEHLIEAFRHGADIHTSTAMRVFGIEKPEDVTPN 705 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 RR+AK +NF ++YGIS F LA L I R EA YI YF R+PGI Y+E R Sbjct: 706 DRRNAKAVNFGVVYGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDK 765 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GYVET+F RR +INS ++R ER AIN+PIQGSAADI + AMI + ++L D Sbjct: 766 GYVETLFHRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALTDGNF 825 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 T+MLLQ+HDE+V EVPE E+T ++ ME A I L VPLK + W E Sbjct: 826 KTRMLLQVHDEIVLEVPENELTAIKTLVKDIMESA----IELVVPLKADESAGKTWYE 879 Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 117/296 (39%), Positives = 161/296 (54%), Gaps = 19/296 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+ +N L L+DGSS +RAF+A L + D GL NAI GF ML L++ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPFGLHTNAIYGFHLMLNHLMERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYK R K PE QLP +R GI ++ Sbjct: 57 ---PTHILVAFDAGKTTFRTEMYADYKGGRAKTPEEFREQLPFIREMLDKLGIRYYDLDQ 113 Query: 115 FEADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHV 168 +EADDII T +AE + VTI+S DKDL+QL T + + K E+ ++ Sbjct: 114 YEADDIIGTLDKMAENTPVPYDVTIVSGDKDLIQLTDDNTIVEISKKGVAEFEEFTPAYL 173 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 ++K GI P + + L+AL GDS DNIPG+ IG KT LL EYG+LE I N ++KQ K Sbjct: 174 MEKMGITPAQFIDLKALMGDSSDNIPGVTKIGEKTGLKLLLEYGSLEGIYDNIDQMKQSK 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 +EN++ + A LSR LV + T PI I LE ++ + N +L F + F + Sbjct: 234 MKENLINDKDIAFLSRTLVTIDTQAPIEIGLEDILYQGPNIKQLSRFYDEMGFKQF 289 >gi|313885140|ref|ZP_07818892.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8] gi|312619831|gb|EFR31268.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8] Length = 887 Score = 346 bits (887), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 196/525 (37%), Positives = 320/525 (60%), Gaps = 32/525 (6%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRS--------SHDIASIAQKWLS 514 KI + K D+++L G+ + G + DIM+ +Y++D+ + ++D+ S+ + Sbjct: 379 KILFDSKRDQVILANAGLDLAGIDFDIMIANYLIDTHLAKELADMLTNNDMPSL----VK 434 Query: 515 YTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV---YER 571 Y K K ++P +++ +H +N + + LL+ P K LH+ Y+ Sbjct: 435 YDEAVYGKGAKQAVP----DSAELNDHL---ANKVKAMGLLVEPLTQQLKDLHMWDLYQT 487 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ V+++MEI G+++D +L + + + L +E IYDL+GE+FN++S KQLG Sbjct: 488 IEMPLARVLARMEIQGVKVDAQILADKNQALLERLAQMEAEIYDLAGEEFNINSVKQLGV 547 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF KL+ P KTKTG + T A LE++ +PII ILE+RQ+SK++ TY LP + Sbjct: 548 ILFEKLELPIIKKTKTG-YSTAADVLEKL-ADKHPIIPAILEYRQISKLQGTYLAGLPTY 605 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750 I K ++H+ + T TGRL+S +PNLQNIP + + G++IR+AF+ + +L ADY Sbjct: 606 I-KEDGKIHSRFVQTLTQTGRLSSADPNLQNIPARIEEGRRIRQAFVPAHEGWQLFGADY 664 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV-SPQMRRHAKTINFSII 809 SQIELR+LAHIA+ + F++ DIH A +FG++ + V +RR AK +NF I+ Sbjct: 665 SQIELRVLAHIAQDQHMIAAFKSGEDIHEATARRVFGLDPDTVIDANLRRQAKAVNFGIV 724 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS + L+ L IPR A +I+ YF ++P IH+++E ++ GYVET+F RR + Sbjct: 725 YGISDYGLSNNLNIPRKHAKAFIENYFEKYPDIHQFMEDIVAEAKEKGYVETLFKRRRYL 784 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +I++ +IR+ ER A+N+PIQG+AADI + AM+ + +L++ L +++LL +HDE++ Sbjct: 785 PDIDASNFNIRSFAERTAMNSPIQGTAADIIKIAMVRIQDALDEKGLQSRLLLSVHDEVI 844 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E P EE+ S ++ ME +C + L VPLKV +N+W E Sbjct: 845 LEGPAEEMEVLSDLVPDIME-SC---VELDVPLKVEYNQANDWYE 885 Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 97/296 (32%), Positives = 150/296 (50%), Gaps = 11/296 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L+DGSS +RAF++ L R DGL NA+ F ML +L + +H V Sbjct: 6 IVLLDGSSLAFRAFFSILDLERFKNKDGLHTNALFSFNRMLENILDQFQ----PTHILVA 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD P TFR + + +YK NR K P QLP R+ +GI ++ +EADDII T Sbjct: 62 FDQPGPTFRTKQFEEYKGNRQKTPSEFKEQLPYFRVLLDGYGIQYYDMADYEADDIIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 + A+ + V +IS DKDL QL + +Y T K E E + +K+ + P +++ Sbjct: 122 SRQADSDD-EVIVISGDKDLTQLATDNVTVYITRKGVSELEAYTPEVIREKFDLEPLQII 180 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++ L GDS DN PGI IG KTA LL ++ + + +K K +ENI+ A Sbjct: 181 EMKGLMGDSSDNYPGITRIGEKTALKLLHQFNTVAEMYDRLDELKPSKMKENIINDKANA 240 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 +SR L + T+VP+ LE + + L+ F + ++F + ++ +A Sbjct: 241 LMSRDLAEIITNVPLEKNLEDIAYKGKQTDLLMDFYRQMQFNSFLTQLQAQTGLEA 296 >gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 942 Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 189/515 (36%), Positives = 309/515 (60%), Gaps = 27/515 (5%) Query: 464 KIGHNIKYDKLVLHRYGISMR---GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520 K+ ++K L +GI + G++D+ L +Y+L+ +++ + Sbjct: 445 KVAFDLKSMAFALDAHGIGLTSECGWQDVKLAAYLLNPQDGEVELSDV-----------F 493 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + R +P + + ++ ++ + L+ L + ++++ +Y+ ++ P+ V+ Sbjct: 494 ARERGQELP--AWEEGEREKWLAYTASQLPPLFESLAYTIRMQEMERLYQEVELPLAFVL 551 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ++MEITG ++++ L E+++ + + + IYDL+G FNL+SPKQLG+ILF KL P Sbjct: 552 AKMEITGFYVNREKLVAFGQELTERIKRITQEIYDLAGTSFNLNSPKQLGEILFDKLGLP 611 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 + KTKTG + T+A LE++ + I++ IL++R L+K++STY + L I K T RVH Sbjct: 612 ALKKTKTG-YSTSADVLEKL-APMHEIVQKILDYRLLAKLQSTYVEGLLKVIRKETGRVH 669 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRI 757 T + T TGRL+S EPNLQNIPI+ + G+++R+ F PT K + +ADYSQIELRI Sbjct: 670 TRFHQTLTATGRLSSSEPNLQNIPIRLEEGRRLRQVF--EPTYKDWVIFAADYSQIELRI 727 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 LAH++ L F +DIH AA++F V E+V+ MRR AK +NF I+YGIS F L Sbjct: 728 LAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDFGL 787 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 A L IP+ EA +I+ YF +FPG+ Y+++ R+ GYV T+ RR + +I+S Sbjct: 788 AQNLNIPQKEAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNY 847 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 +R+ ER A+N PIQGSAAD+ + AM+ + +++ D ++ +MLLQ+HDEL+FE P++E+ Sbjct: 848 QLRSFAERTAMNTPIQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDELIFECPKDEL 907 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ +ME A + L VPLKV+ W Sbjct: 908 AALEVLVRDNMENA----MTLSVPLKVDTAYGPTW 938 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 108/297 (36%), Positives = 172/297 (57%), Gaps = 10/297 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG+S +YRAF+A P L+ + DG P NA+ GF M+ +L+ + + +H AV Sbjct: 62 SKLVLIDGNSILYRAFFALPPLTAR-DGTPTNAVYGFTTMILRLMSDEK----PTHLAVA 116 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + YK R + P+ L+ Q PL R +A IP +EI +EADD+I T Sbjct: 117 FDKSKTTFRHADFAAYKGTRQETPDELVQQFPLARRTLEALSIPMVEIDQYEADDVIGTL 176 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179 A + GF V ++S DKDL+QLV + T K E D + V +++ G+ P ++ Sbjct: 177 AKRAAEAGFDVRVVSGDKDLLQLVDDRIHVLLTRKGITEMEHFDEQAVARRYPGLKPAQV 236 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+ L GD DNIPG+PG+G KTA LL +G +E + + ++ +K RE + ++ E Sbjct: 237 IDLKGLMGDPSDNIPGVPGVGEKTALKLLASFGTVEGVYDHLDEVQGQKLRERLEQHRED 296 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A LS++L + D PI + LE L E + R I++ + L+F L+++++ D+ Sbjct: 297 AFLSKRLATIACDAPIEVDLETLRYEGPDPARAIAWFRELDFRSLVDKISEEMSHDS 353 >gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759] gi|158450485|gb|EDP27480.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759] Length = 886 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 188/490 (38%), Positives = 307/490 (62%), Gaps = 12/490 (2%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIE 544 D+ + +Y+L+ +S++ I++++L + KE L ++ ISD+ ++ A + Sbjct: 404 DVGIAAYLLNPLENSYNYDDISKEYLEVMLPSEKE-LTGKEELNAFTFISDNFLELFAYK 462 Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 +L + L+ KL + +Y ++ P + + ME G+++D+ L++ S ++ Sbjct: 463 ALVPLLAMDTLIE-KLKGTGMYDLYMNVELPTVYTLHDMEKRGVRVDRTALEEYSHKLES 521 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664 + L ++I + +G+ FN++SPKQLG +LF + P G KTKTG + T+A LE+I Sbjct: 522 RIKELHDSIIEYAGKDFNINSPKQLGPVLFEDMALPGGKKTKTG-YSTSADVLEKIK-NV 579 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 +PII +ILE+RQLSK+ STYA L + I+ R+H ++ T TGR++S +PNLQNIP Sbjct: 580 HPIINDILEYRQLSKLNSTYAIGLGSFISS-DGRIHGTFNQTITATGRISSTDPNLQNIP 638 Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 ++ +LG+ IR+AFI + ADYSQ+ELR+LAH++ + + F+N++DIH A+E Sbjct: 639 MRMELGRLIRKAFIPQDGFVFVDADYSQVELRVLAHLSDDSVMKNAFQNNIDIHSTTASE 698 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +FGV I++V+P RRHAK +NF I+YGIS F L+ L I R EA+D+I++Y+ + I Sbjct: 699 VFGVPIDEVTPLQRRHAKAVNFGIVYGISAFGLSEDLGISRKEASDFIEKYYDTYKSIKT 758 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 Y++ F ++NGYV+T+FGR E+ S R+ ER A+N+PIQGSAADI + AM Sbjct: 759 YLDGQVKFAKENGYVKTMFGRIRPIPELKSSNFMQRSFGERVAMNSPIQGSAADIIKIAM 818 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 + V+ L++ L ++++LQIHDEL+ E ++E+ T +I+V M A ++ VPL+V Sbjct: 819 LHVNIKLKELGLKSRLILQIHDELLIETAKDEVDTVRKILVDEMMHAA----DMTVPLEV 874 Query: 965 NIKVSNNWQE 974 + NNW E Sbjct: 875 GVASGNNWYE 884 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 117/333 (35%), Positives = 189/333 (56%), Gaps = 25/333 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + ++DG S + RAFY P L+ ++GL NA+ GF N+++K++ E ++ V FD Sbjct: 13 ILIIDGHSILNRAFYGLPDLTN-YEGLHTNAVLGFLNIIFKIID----EEQPTNMCVAFD 67 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y +YK R +P+ L Q+PL++ A I IE G+EADDII T + Sbjct: 68 VKQPTFRHLMYKEYKGTRKPMPDELREQVPLIKEVLTAMNITIIEKGGYEADDIIGTLSR 127 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IA+K+G+ V I+S D+DL+QL + P T T E + V K +G+ P + Sbjct: 128 IADKDGYKVVIVSGDRDLLQLATDNILVRIPKTKAGGTTVENYYAAD-VQKLYGVTPVQF 186 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD+ DNIPG+PGIG KTA ++QE+ +++N L + IK K ++N+ E+A+ Sbjct: 187 IDMKGLMGDTSDNIPGVPGIGEKTAGKIIQEWKSIDNALEHIDEIKPPKAQKNLREFADQ 246 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC--DAA 297 A++SR+L ++ D + L+ L D + + +K LEF ++ R +D DA Sbjct: 247 AKMSRELATIKLDCVLDFNLDDTDLFDMFNDKSYNIMKRLEFKSMLKR----FDAKPDAQ 302 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQ 330 ++P + IN EN A++T RDT I + Sbjct: 303 ELKPEITVIN--ENS--ALDTV--RDTVIAAGK 329 >gi|199599523|ref|ZP_03212912.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus rhamnosus HN001] gi|199589592|gb|EDY97709.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus rhamnosus HN001] Length = 881 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 198/508 (38%), Positives = 306/508 (60%), Gaps = 29/508 (5%) Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531 HR G+ + D++L SY+++ +S+D+ IA+ + R E + K K +P D Sbjct: 387 HRLGLHLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAKRQVPED 446 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 K+ + E S + L L L ++ ++ ++ P+ V+++MEI GI ++ Sbjct: 447 KL----LFEQFARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGITLN 502 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 LK + E S+++ LEE IY +G KFNL+SPKQLG++LF KL P KTKTG + Sbjct: 503 AQTLKNMGTEFSQSIKVLEEKIYGEAGVKFNLNSPKQLGEVLFEKLNLPVIKKTKTG-YS 561 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL-----PNHINKRTQRVHTFYSLA 706 T+ L ++ +PI+++IL++R +K+ STY L P+H ++HT Y Sbjct: 562 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTYVVGLLKAQMPDH------KIHTRYLQT 614 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKIT 765 T TGRL+S++PN+QNIP + D G+ IR+AF+ S P ++ S+DYSQIELR+L+HI+ Sbjct: 615 LTQTGRLSSVDPNMQNIPAR-DEGKIIRKAFVPSHPDWQIFSSDYSQIELRVLSHISGDE 673 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 + Q F++ +DIH A +IFG++ ++V+P MRR AK NF I+YGIS + LA + I Sbjct: 674 NMQQAFKHGVDIHANTAMKIFGLDSPDEVTPDMRRQAKATNFGIVYGISDYGLAQNIGIS 733 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 R +A +I YF ++P +H+Y+E R++GYVET+F RR + +I+S ++R E Sbjct: 734 RKKAKAFIDGYFEQYPKVHDYMENMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAE 793 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R A+N PIQGSAADI + AMI + K+L++ L KMLLQ+HDEL+FE P E+ Q++ Sbjct: 794 RTAMNTPIQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLV 853 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNW 972 M+ A ++L VPLKV W Sbjct: 854 PKIMDSA----VSLVVPLKVESHYGPTW 877 Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 107/296 (36%), Positives = 161/296 (54%), Gaps = 11/296 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + L L+DG+S +RAF+A L R DGL NAI F NML +L++ + ++ Sbjct: 1 MTSQTKLLLIDGNSIAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKSVKPDAA 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 V FD TFR Y DYK+ R K P LL QLP ++ GI E++ +EA Sbjct: 61 L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIQHYELKDYEA 116 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T A+ G+ TI++ D+DL QL + T + TVK E EHV +K G Sbjct: 117 DDIIGTMAKRADDAGWQTTIVTGDRDLTQLTTDQTTVQVTVKGVNELEAYTPEHVKEKLG 176 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P +++ L+ L GD+ DN PG+ +G KTA LL++YG++EN+ N +K K +EN+ Sbjct: 177 ITPTQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLKQYGSIENLYANIDAMKTSKMKENL 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 + + A LS++L + D P+TI L + + +L F ++ L+ ++ Sbjct: 237 INDKDKAYLSKQLATIDRDAPVTIDLADVKYSGPDLAKLRDFYTKMDMNSLLKKIG 292 >gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977] gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977] Length = 839 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 175/413 (42%), Positives = 263/413 (63%), Gaps = 8/413 (1%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 E+L +Y +++P+ V++ ME G+++D D L +S E++ L LE I+ L+G FN Sbjct: 432 ERLWWLYREVERPLQGVLAAMERRGVKLDVDYLLALSQELAAELERLEAEIHRLAGHPFN 491 Query: 623 LSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 L+S QL +L+ +L +G +T KTG+ T+A LE + G +PI++ IL++R+L+K+K Sbjct: 492 LNSRDQLETVLYDELGLAAGRRTAKTGKRSTSASVLETLR-GAHPIVEKILQYRELAKLK 550 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 TY D LP ++ RT R+HT + T TGRL+S +PNLQNIPI+T++G++IR+ F++ Sbjct: 551 GTYLDPLPKLVHPRTGRLHTRFHQTGTATGRLSSSDPNLQNIPIRTEIGRRIRKGFVAGE 610 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 L+ ADYSQIELR+LAH++ L ++F+ DIH AA +FGV +V P RR A Sbjct: 611 GYLLVVADYSQIELRVLAHLSGDENLIRIFQEGRDIHTQTAAWMFGVEDVEVDPFRRRAA 670 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 KTINF ++YG+S RL+ +L I EA +I RYF +PG+ ++E+ R+ GYVET Sbjct: 671 KTINFGVLYGMSAHRLSRELGIDYGEAQAFIDRYFDSYPGVRAFMERVLEEARERGYVET 730 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 +FGRR H E+ S ++R ER A N P+QG+AAD+ + AM+ + LE L +L Sbjct: 731 LFGRRRHVPELLSKARNVREAAERVAFNMPVQGTAADLIKLAMVKLAPRLE--PLGAALL 788 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LQ+HDELV E PEE ++++ +ME+A L VPL V + V +W E Sbjct: 789 LQVHDELVVEAPEERAAETARVVKATMEEAW----RLDVPLAVEVGVGRDWLE 837 Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 155/288 (53%), Gaps = 7/288 (2%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 K + LVDG +R++YA G PV+A+ GF L KLL+ I Sbjct: 13 KPERIVLVDGHHLAFRSYYALKDAGLSTSSGEPVHAVYGFARTLLKLLREDGDCVI---- 68 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V+FD P +FR+E + YKA R PE PQ+ ++ G+ +E+ G EADD++ Sbjct: 69 -VVFDAPGPSFRHEEFAGYKAQRVAPPEDFKPQVEKIKQLVDLLGLVRLEVPGVEADDVL 127 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 AT AE+EG+ V I+++D+D QL++ + T E +I +++ +K+G+ PE+ V Sbjct: 128 ATLARRAEREGYEVVILTSDRDTYQLLTDRVVVV-TPDERRITPDYLRQKYGVGPEQWVD 186 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +ALTGD DNIPG+ G+G KTAA LL +G+L+ I + + R+ + E E A Sbjct: 187 YRALTGDPSDNIPGVRGVGAKTAAKLLARWGSLDRIYEHLDEVTPPGVRKKLEEGREAAF 246 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 SR++ +R DVP+ + L + + L FL LEF L+ + Sbjct: 247 FSREISRMRADVPLDVDLTGCHRNEVDREGLRRFLLDLEFGTLLRELG 294 >gi|227520124|ref|ZP_03950173.1| possible DNA polymerase I [Enterococcus faecalis TX0104] gi|227072414|gb|EEI10377.1| possible DNA polymerase I [Enterococcus faecalis TX0104] Length = 431 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 186/409 (45%), Positives = 260/409 (63%), Gaps = 9/409 (2%) Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ +++ P+ ++ MEITGI++D LK++ E S+ L +EE IY +GE+FNL+SPK Sbjct: 28 LFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPK 87 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF K+ P KTKTG + T LEQ+ PI+ +IL +RQ++KI+STY + Sbjct: 88 QLGVILFEKMGLPVIKKTKTG-YSTAVDVLEQLK-EQAPIVADILTYRQIAKIQSTYVEG 145 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI- 746 L I ++HT Y T TGRL+S++PNLQNIPI+ + G+KIR AF+ LI Sbjct: 146 LLKVIQP-DNKIHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIF 204 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTIN 805 S+DYSQIELR+LAHI+ L + F DIH A +FGV E V+P MRR AK +N Sbjct: 205 SSDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVN 264 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F I+YGIS + L+ L I R +A YI YF ++PG+ +Y+E+ + GYVET++ R Sbjct: 265 FGIVYGISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHR 324 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + +INS ++R+ ER AIN PIQGSAADI + AMI + + L++ KL MLLQ+H Sbjct: 325 RRYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVH 384 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DELVFEVPE E+ +Q++ ME A ++L VPL + W E Sbjct: 385 DELVFEVPESELEQLNQLVKEVMEHA----VSLHVPLITDSSWGKTWYE 429 >gi|282911317|ref|ZP_06319119.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|282325012|gb|EFB55322.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|312437852|gb|ADQ76923.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH60] Length = 876 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 229/642 (35%), Positives = 344/642 (53%), Gaps = 69/642 (10%) Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-----TLDQKDDTSFKVE 425 ++ +D QQ +K+E FK + +D S AI + + D D TS K Sbjct: 260 LMTHQDEQQ--EKIELFKKLEFKQLLADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEA 317 Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSY---------------------LKKFFENEHFLK 464 TI +L G N L IL + L + EN + K Sbjct: 318 TIHFELD--------GGNYLRNNILKFSLFTGEKHIVINADDIINYAELVSWLENPNTKK 369 Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKEIL- 521 + ++ K + HR GI ++ DIML SY++D R+ D+ S+ + S+ + ++ Sbjct: 370 VVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSI 429 Query: 522 --KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LD 573 K +K +P D + + V I +P + +K L Y + L+ Sbjct: 430 YGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM--DKQLEEYNQVELLADLE 479 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 + ++S+ME GI D L+++ EI + L L NI+D +GE FN++SPKQLG +L Sbjct: 480 LSLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVL 539 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 F L+ P KTKTG + T LEQ+ G++PII ILE+RQLSK++STY + L I+ Sbjct: 540 FETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQLSKLQSTYVEGLQKVIS 597 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADY 750 QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+AF PT K ++SADY Sbjct: 598 D-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAF--KPTSKDSVILSADY 654 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELR+LAHI + + + F N DIH A ++FGV ++V MRR AK +NF I+Y Sbjct: 655 SQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVY 714 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 GIS + L+ L I R +A +I Y FPG+ +Y+ + G+VET+ RR + Sbjct: 715 GISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIP 774 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 +I S ++R ER A+N PIQGSAADI + AM+ + +++ K+LLQ+HDEL+F Sbjct: 775 DITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIF 834 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 835 EVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 120/341 (35%), Positives = 178/341 (52%), Gaps = 31/341 (9%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L+ Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLL------------ 283 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338 DI+ + + AIE + +T+ F+SL + T Sbjct: 284 ------ADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEAT 318 >gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402] gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7] gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402] gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7] Length = 870 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 202/527 (38%), Positives = 309/527 (58%), Gaps = 18/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K F ++ K G++IK +G+ + + D+ L SY+L+ +I S+ + Sbjct: 355 FKNFISDKKIEKYGYDIKKSINAAKWHGLEIENYVFDLQLASYILNPSLKD-EIRSVCEY 413 Query: 512 W----LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + + Y + K K +P S+V EH I+ + I L KL E Sbjct: 414 YEYYDVFYDEEVYGKGAKKKVP----ETSRVAEHLIKQAKAIYILKDQAIEKLNNENQFE 469 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +Y+ ++ P+ ++++ME G ++D +LKQ+ + + + LE+ I+ L+ +FN++SPK Sbjct: 470 LYKDVEMPVAKILARMEFQGAKVDSVVLKQLEEQFGREINILEKEIHTLANREFNIASPK 529 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG++LF L P+G KTKTG + T+ L ++ +PII +L++R LSK+ STY Sbjct: 530 QLGEVLFEDLGLPNGKKTKTG-YSTSVDILNKLK-DIHPIIDKVLKYRTLSKLYSTYIIG 587 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747 L + + ++HT Y+ A T TGRL+S +PNLQNIP+KT G+ IR+AF+ P L+S Sbjct: 588 LQDQVF-IDGKIHTIYNQALTQTGRLSSTDPNLQNIPVKTPEGKLIRKAFV-PEYDYLVS 645 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 DYSQIELR+LAH+A + L + F DIHR A+EIF V E+V MRR+AK +NF Sbjct: 646 FDYSQIELRVLAHLAGVKSLIKAFNEDKDIHRHTASEIFRVPEEQVDSTMRRNAKAVNFG 705 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 IIYG+S F LA Q+ + EA ++IKRYF +P I Y++ +F ++NGYV T+ R+ Sbjct: 706 IIYGMSDFGLAEQVGVSVGEAREFIKRYFENYPEIKLYMDSNIDFCKKNGYVTTMLNRKR 765 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 EIN + +R A+N+PIQGSAADI + AMI V + L+ H+L +KM+LQ+HDE Sbjct: 766 FIREINEKNYMRQEFGKRLAMNSPIQGSAADIIKVAMIKVDELLKKHQLKSKMILQVHDE 825 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+F+V +EE+ +I+ M A I + V LK + NW E Sbjct: 826 LIFDVYQEELQEVMEIVAKGMTTA----IKMDVELKAEGSYAVNWYE 868 Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 108/293 (36%), Positives = 161/293 (54%), Gaps = 19/293 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L ++DG+S +YRA+YAT + DG+P NA+ GF NML +L+ + + V Sbjct: 4 LVMIDGNSLLYRAYYATAAMGNLMVNKDGVPTNAVYGFANMLESILKGN-----PEYLVV 58 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FDY TFRN+++ YK R P+ L Q ++R A GI EI+G+E DDII T Sbjct: 59 AFDYGKKTFRNDLFEVYKGTRSATPDELACQFSMIREYLTAHGIRYQEIEGYEGDDIIGT 118 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 A K+ F V+I+++DKD++QLV +Y T K EKI + +G+ P++M Sbjct: 119 VAVKASKQRFKVSIVTSDKDMLQLVDDNISVYLTKKGVGELEKITPAKFKEIYGLIPDQM 178 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEY 236 L+ L GD DNIPGIPG+G KTA LL+EY +EN+ + +K K K R+NI Sbjct: 179 RDLKGLMGDKSDNIPGIPGVGEKTALKLLKEYHTVENLSEHLDDLKGKMGEKIRDNI--- 235 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 + LS+++ + DVP+ I LE + + L F + L+ R++ Sbjct: 236 -DQGLLSKRIATIIKDVPMEIDLEEYRYQGHDYNELAEFYRRYSMNSLLKRMS 287 >gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 895 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 189/515 (36%), Positives = 309/515 (60%), Gaps = 27/515 (5%) Query: 464 KIGHNIKYDKLVLHRYGISMR---GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520 K+ ++K L +GI + G++D+ L +Y+L+ +++ + Sbjct: 398 KVAFDLKSMAFALDAHGIGLTSECGWQDVKLAAYLLNPQDGEVELSDV-----------F 446 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + R +P + + ++ ++ + L+ L + ++++ +Y+ ++ P+ V+ Sbjct: 447 ARERGQELP--AWEEGEREKWLAYTASQLPPLFESLAYTIRMQEMERLYQEVELPLAFVL 504 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ++MEITG ++++ L E+++ + + + IYDL+G FNL+SPKQLG+ILF KL P Sbjct: 505 AKMEITGFYVNREKLVAFGQELTERIKRITQEIYDLAGTSFNLNSPKQLGEILFDKLGLP 564 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 + KTKTG + T+A LE++ + I++ IL++R L+K++STY + L I K T RVH Sbjct: 565 ALKKTKTG-YSTSADVLEKL-APMHEIVQKILDYRLLAKLQSTYVEGLLKVIRKETGRVH 622 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRI 757 T + T TGRL+S EPNLQNIPI+ + G+++R+ F PT K + +ADYSQIELRI Sbjct: 623 TRFHQTLTATGRLSSSEPNLQNIPIRLEEGRRLRQVF--EPTYKDWVIFAADYSQIELRI 680 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 LAH++ L F +DIH AA++F V E+V+ MRR AK +NF I+YGIS F L Sbjct: 681 LAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDFGL 740 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 A L IP+ EA +I+ YF +FPG+ Y+++ R+ GYV T+ RR + +I+S Sbjct: 741 AQNLNIPQKEAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNY 800 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 +R+ ER A+N PIQGSAAD+ + AM+ + +++ D ++ +MLLQ+HDEL+FE P++E+ Sbjct: 801 QLRSFAERTAMNTPIQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDELIFECPKDEL 860 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ +ME A + L VPLKV+ W Sbjct: 861 AALEVLVRDNMENA----MTLSVPLKVDTAYGPTW 891 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 108/297 (36%), Positives = 172/297 (57%), Gaps = 10/297 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG+S +YRAF+A P L+ + DG P NA+ GF M+ +L+ + + +H AV Sbjct: 15 SKLVLIDGNSILYRAFFALPPLTAR-DGTPTNAVYGFTTMILRLMSDEK----PTHLAVA 69 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + YK R + P+ L+ Q PL R +A IP +EI +EADD+I T Sbjct: 70 FDKSKTTFRHADFAAYKGTRQETPDELVQQFPLARRTLEALSIPMVEIDQYEADDVIGTL 129 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179 A + GF V ++S DKDL+QLV + T K E D + V +++ G+ P ++ Sbjct: 130 AKRAAEAGFDVRVVSGDKDLLQLVDDRIHVLLTRKGITEMEHFDEQAVARRYPGLKPAQV 189 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+ L GD DNIPG+PG+G KTA LL +G +E + + ++ +K RE + ++ E Sbjct: 190 IDLKGLMGDPSDNIPGVPGVGEKTALKLLASFGTVEGVYDHLDEVQGQKLRERLEQHRED 249 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A LS++L + D PI + LE L E + R I++ + L+F L+++++ D+ Sbjct: 250 AFLSKRLATIACDAPIEVDLETLRYEGPDPARAIAWFRELDFRSLVDKISEEMSHDS 306 >gi|302333355|gb|ADL23548.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus JKD6159] Length = 876 Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 208/539 (38%), Positives = 313/539 (58%), Gaps = 37/539 (6%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 E++S+L EN + K+ ++ K + HR I ++ DIML SY++D R+ D+ Sbjct: 357 ELVSWL----ENPNTKKVVYDAKKTYVASHRLEIDIQNISFDIMLASYIIDPSRTISDVQ 412 Query: 507 SIAQKW-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 S+ + S+ + ++ K +K +P D + + V I +P + Sbjct: 413 SVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVAS--------ITDAIYFAKPNM-- 462 Query: 563 EKLLHVYER------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +K L Y + L+ P+ ++S+ME GI D L+++ EI + L L NI+D Sbjct: 463 DKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDA 522 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 +GE FN++SPKQLG +LF L+ P KTKTG + T LEQ+ G++PII ILE+RQ Sbjct: 523 AGEDFNINSPKQLGVVLFETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQ 580 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 LSK++STY + L I+ QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+A Sbjct: 581 LSKLQSTYVEGLQKVISD-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKA 639 Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 F PT K ++SADYSQIELR+LAHI + + + F N DIH A ++FGV ++V Sbjct: 640 F--KPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQV 697 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 MRR AK +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ Sbjct: 698 DSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDA 757 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET+ RR + +I S ++R ER A+N PIQGSAADI + AM+ + +++ Sbjct: 758 KALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKE 817 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 K+LLQ+HDEL+FEVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 818 TTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 183/346 (52%), Gaps = 23/346 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L+ + + + A Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDA 295 Query: 298 -----NIEPVVLDINTTENKGIAIETEID-----RDTTIKTSQFSS 333 IE +I+ T K AI E+D R+ +K S F+ Sbjct: 296 IEKTFEIETSFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTG 341 >gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662] gi|167654067|gb|EDR98196.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662] Length = 880 Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 194/490 (39%), Positives = 289/490 (58%), Gaps = 11/490 (2%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIE 544 D L +Y+++ +S+++ I++ +L ++KE+L RKS K+ Q E Sbjct: 397 DAALAAYLINPLKSTYEYDDISRDYLGIMLPSKKELLDKRKSIFEEGKLLPEGEQIIGYE 456 Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 + V LR KL +L +YE ++ P + + ME+ GI +D+ LK+ ++ Sbjct: 457 -AYVACACIEPLRKKLTETGMLSLYEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIG 515 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664 + L E IY +GE+FN++SPKQLG +LF +K G KTKTG + T+ LE+I Sbjct: 516 RIEELRELIYKEAGEEFNINSPKQLGVVLFEHMKLEGGKKTKTG-YSTSVDVLEKIEH-L 573 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 PII ILE+RQL+K+KSTYAD L N+I +R+H ++ T TGR++S EPNLQNIP Sbjct: 574 YPIISYILEYRQLTKLKSTYADGLANYIGD-DERIHGKFNQTITATGRISSTEPNLQNIP 632 Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 + +LG+ IR+ F+ + ADYSQIELR+LAH++ L +E DIH A+E Sbjct: 633 ARVELGRAIRKVFLPEEGYTFVDADYSQIELRVLAHLSGDKNLIHAYEMEQDIHARTASE 692 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +FGV I++VS RR AK +NF I+YG+S F L+ L+I R +A +YI +YF +P + E Sbjct: 693 VFGVPIDQVSSIQRRDAKAVNFGIVYGLSAFGLSQDLKITRKQAQEYIDKYFETYPKVKE 752 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 Y+ + ++ G+V T+F R E+ S RN ER A+N+PIQGSAADI + AM Sbjct: 753 YLNREVEKGKEEGFVTTMFQRIRPIPELKSSNFMQRNFGERVAMNSPIQGSAADIIKIAM 812 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 I V+ L+ KL ++++LQIHDEL+ E + E+ I+ M A L VPL + Sbjct: 813 IRVNMELKKRKLKSRLILQIHDELLIEAHDSEVEEVKGILTREMMSAA----KLSVPLSI 868 Query: 965 NIKVSNNWQE 974 +I N+W E Sbjct: 869 DIHTGNSWYE 878 Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 168/291 (57%), Gaps = 13/291 (4%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E L L+DG S + RAFYA P ++ GL NAI GF N+++K L + +HFAV Sbjct: 5 EKKLMLIDGHSILNRAFYALPDMTNSK-GLHTNAILGFLNIMFKFLDEEK----PTHFAV 59 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A TFR+E++ +YK R +PE L Q+P+++ +A IP + +G+EADD++ T Sbjct: 60 AFDLSAPTFRHEMFKEYKGTRKPMPEELREQVPVIKEVLKAMDIPLMMEEGYEADDLLGT 119 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPP 176 + I EKEG+ V IIS D+DL+QL + P T V E+ + V++ +G+ P Sbjct: 120 MSVIGEKEGYQVRIISGDRDLLQLATENVQIRIPKTKGGGNVVEDYF-AKDVMETYGVTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + ++AL GD+ DNIPGIPGIG KTA+ +++E+ ++EN + + K+ + + E+ Sbjct: 179 REFIDMKALMGDASDNIPGIPGIGEKTASKIIKEFKSIENAYEHIEEVMPKRAKNKLEEF 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 + LS++L ++ D PI + E D LK LEF ++ + Sbjct: 239 YDQGVLSKELATIKLDCPIELSFEDAKFNDIFTGEAYQLLKQLEFKSVLKK 289 >gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110] gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110] Length = 583 Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 221/562 (39%), Positives = 330/562 (58%), Gaps = 46/562 (8%) Query: 443 NTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500 N L K+ +L L+ E++++ K+ N K+D+L+ GI++ G D ML SYVL + Sbjct: 36 NQLKKQKVLDSLRTILESKNYPKVFQNTKFDRLIFKHQGINLDGVVFDTMLASYVLHPEK 95 Query: 501 SSHDIASIAQKWL----SYTRKEILKSRKSSIP---IDKISDSQVQEHAIENSNVILQLW 553 S H ++ + +++L S KE+ +K +I IDK++ E+ ++ L Sbjct: 96 S-HKLSELCEQYLEGITSQNYKELGIGKKQTIADLEIDKVA-----EYCGMDAYATFLLV 149 Query: 554 LLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612 L+ +L V L + +++P+ V+S ME TGI ID + L ++S ++ K+LL LEE Sbjct: 150 EPLKNELKQVSSLEKLLLEVEQPLEAVLSIMEDTGILIDTEYLGELSKQLEKDLLILEEK 209 Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670 Y+++G KFNL SPKQLG+ILF KL+ KTKTG + T L+++ GD+PII Sbjct: 210 AYEVAGGKFNLGSPKQLGEILFEKLELNRKKSRKTKTG-YSTDHATLDKLK-GDHPIIDY 267 Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730 ILE+R LSK+KSTY D+LP ++ +T+R+HT ++ + T TGRL+S PNLQNIPI+T+ Sbjct: 268 ILEYRTLSKLKSTYIDALPELVDTKTKRIHTNFNQSVTATGRLSSSNPNLQNIPIRTEFS 327 Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790 ++IR+AFI L+SADYSQIELRILAH+++ L ++N+ D+H + A +F Sbjct: 328 RQIRQAFIPQKDWLLVSADYSQIELRILAHLSQEPVLLNAYQNTEDVHTVTAKLLF--EK 385 Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850 EK++ Q R KTINF +IYG+ R A + + +E ++I +Y R+ + EY+E K Sbjct: 386 EKITSQERNLGKTINFGVIYGMGSQRFAREAGVTAAEGKEFINKYRQRYAKVFEYLESMK 445 Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIR------------NINE------RAAINAPI 892 NGYV TI GRR +++ + R NIN RAA NAPI Sbjct: 446 KEAIANGYVTTILGRRRYFNFFDDNLYRFRGHDPQTIDLNQLNINYNDSQLLRAAANAPI 505 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGS+ADI + AM+ + + L +H A +LLQ+HDELVFE+P +E I +ME A Sbjct: 506 QGSSADIIKIAMVKIQEIL-NHCQAN-LLLQVHDELVFEIPVKEWEKLENKIKETMENA- 562 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + L +PL V I NW E Sbjct: 563 ---VKLTIPLVVEIHAGKNWME 581 >gi|331091047|ref|ZP_08339889.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405269|gb|EGG84805.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium 2_1_46FAA] Length = 871 Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 173/421 (41%), Positives = 267/421 (63%), Gaps = 7/421 (1%) Query: 554 LLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613 L +L +K+ H++ ++ P+ + ME G+++ + LK ++ + LE I Sbjct: 456 FFLSDRLKEKKMEHLFTDIEMPLAFTLFDMEQAGVKVKAEELKVYGQQLGGKINELETEI 515 Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673 Y+++GE FN++SPKQLG +LF L P+G KTKTG + T A LE++ D PI+ ILE Sbjct: 516 YEIAGETFNINSPKQLGVVLFEHLNLPNGKKTKTG-YSTAADVLEKL-APDYPIVSKILE 573 Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733 +RQL+K+KSTYAD L N I + R+H ++ T TGR++S EPNLQNIP++ +LG+ I Sbjct: 574 YRQLAKLKSTYADGLANFI-QEDGRIHGKFNQTVTATGRISSTEPNLQNIPVRMELGRLI 632 Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 R+ F+ + ADYSQIELRILAH + L ++ + DIHR+ A+++F + ++V Sbjct: 633 RKVFVPEEDYVFVDADYSQIELRILAHCSGDESLISAYKEARDIHRITASQVFHIPFDEV 692 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 + RR+AK +NF I+YGIS F L+ L I R EA +YI YF +PGI +++ T Sbjct: 693 TDLERRNAKAVNFGIVYGISSFGLSQDLSITRKEAGEYIDNYFKTYPGIKTFLDDTVAHA 752 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 ++ GYV T+FGRR E+ S R+ ER A+NAPIQG+AADI + AMI V+++L++ Sbjct: 753 KEQGYVVTLFGRRRPVPELESGNFMQRSFGERVAMNAPIQGTAADIMKIAMIGVNRTLKE 812 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 ++ +K++LQ+HDEL+ E ++E+ I+ ME+A +L VPL +++ N+W Sbjct: 813 KQMKSKLVLQVHDELLIEAYKDEVEEVKSILKREMEEAA----SLSVPLDIDMHTGNSWY 868 Query: 974 E 974 E Sbjct: 869 E 869 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 167/287 (58%), Gaps = 11/287 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ +GL NAI GF N+L+K+L+ + E + V FD Sbjct: 5 IVLIDGHSILNRAFYGVPDLTNS-EGLHTNAIYGFLNILFKILEEEKPE----YLTVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+E+Y +YK R + E L Q+P+++ QA G+ IE G+EADD++ T + Sbjct: 60 VHAPTFRHEMYDEYKGTRKPMLEELRQQVPVMKEVLQAMGVKLIEQAGYEADDLLGTLSV 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180 +AE++G V+IIS D+DL+QL + + K+ K +IE+ V +K+ + P++ + Sbjct: 120 LAEEKGMDVSIISGDRDLLQLATEKVKIRIPKTKKGKTEIENYYAKDVEEKYFVTPKEFI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+AL GD+ DNIPG+ IG KTA ++ ++ ++EN + +K + + + E + A Sbjct: 180 DLKALMGDTSDNIPGVASIGEKTATKIITQFHSIENAYAHLDELKPPRAGKALQEQYDKA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 ++S++L + VP++ E L + + + LEF L++R Sbjct: 240 QMSKELATIHVHVPVSYDFEEAKLGNLYTEEAYVYFQKLEFKNLLSR 286 >gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund] gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund] Length = 878 Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 197/528 (37%), Positives = 317/528 (60%), Gaps = 35/528 (6%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 LK FENE K+ H+ K +VL+++ I+ + D + +Y+L +S + + + ++ Sbjct: 378 LKNLFENEKIKKVCHDSKKVYVVLNKHNITAKNIAFDTKIAAYLLQPSKSDYMLKDLIEE 437 Query: 512 WLSYTRKEILKSRKSSIPIDK---ISD-SQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 L + KE +I I++ I D + E I+ SN+ E+LL+ Sbjct: 438 MLLLSLKEY-----DNIKINETYYIKDIYEKLEKDIKESNM--------------EELLY 478 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 E P+++V++ ME G ++D++ L ++ + K + +LE+ I++L+ E+FN+ SPK Sbjct: 479 TVEL---PLVEVLASMECAGFRVDENRLTEIGEKFKKEIETLEKEIHELADEEFNIKSPK 535 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T A+ LE++ +PII+ I+E+RQ++K+ STY + Sbjct: 536 QLGKILFEKLDLPVIKKTKTG-YSTNAEVLEKLK-DKHPIIEKIIEYRQITKLDSTYVEG 593 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI- 746 L N I+ ++H+ ++ T TGRL+S EPNLQNIPIK ++G++IR+ F+ + +I Sbjct: 594 LKNVIDG-DGKIHSSFNQTVTTTGRLSSTEPNLQNIPIKHEMGREIRKVFVPNNNESVIF 652 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 SADYSQIELRIL+HIA L F++ DIH + A+E+F V I++V+P MR +AK +NF Sbjct: 653 SADYSQIELRILSHIADDEKLIDAFKHHKDIHTITASEVFKVPIDEVTPLMRSNAKAVNF 712 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YGI F L+ + + R EA +YI YF R+P + +YI++ + +G+V TI R+ Sbjct: 713 GIVYGIGAFSLSKDINVSRKEAKEYIDTYFSRYPNVKKYIDEIISKAEVDGFVTTILNRK 772 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + EI S +R ER A+N PIQGSAADI + AM+ V+ L++ L + ++LQ+HD Sbjct: 773 RYIPEIQSRNKIVRGFGERLAMNTPIQGSAADIIKLAMVEVYNELKNRNLKSTLILQVHD 832 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EL+ V ++E+ ++V ME + L VPL+ ++ W E Sbjct: 833 ELILNVYKDELEEVKNMVVDKMENV----MKLLVPLEADVNAGETWYE 876 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/294 (39%), Positives = 173/294 (58%), Gaps = 13/294 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L ++DG S +YRAF+A P L+ K +G+ NAI GF ML K+ KE I Sbjct: 1 MNKE-RLLILDGHSLMYRAFFALPPLTNK-EGIHTNAIYGFIKMLLKM-----KEEINPD 53 Query: 61 FAVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 + V FD A TFR++ Y DYKA R K+P+ L Q P+V+ I EI+GFEADD Sbjct: 54 YIVTTFDKKAPTFRHKEYEDYKAGRAKMPDELNEQFPIVKDILNKLAINIFEIEGFEADD 113 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIP 175 +I T + AE++G V I++ D+D +QL + + K +E D +I+++G+ Sbjct: 114 LIGTLSKFAEEKGIEVYIVTGDRDALQLATDNVKVVINKKGMSEKEIYDKNKMIEEYGVT 173 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P + + ++ L GD DNIPG+PGIG KTA L++EYG++EN+L N I KK ++N+++ Sbjct: 174 PTQFIDVKGLMGDKSDNIPGVPGIGNKTALKLIKEYGSIENVLENVENISGKKMKQNLID 233 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRV 288 Y E A S+KL + DVPI I L + ED + + ++L F LI+ + Sbjct: 234 YREQAIFSKKLATICKDVPIEIDLGEIKSKEDYDIEGVRQLFQSLGFKSLIDNI 287 >gi|282919455|ref|ZP_06327190.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427] gi|282317265|gb|EFB47639.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427] Length = 876 Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 229/642 (35%), Positives = 344/642 (53%), Gaps = 69/642 (10%) Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS-----TLDQKDDTSFKVE 425 ++ +D QQ +K+E FK + +D S AI + + D D TS K Sbjct: 260 LMTHQDEQQ--EKIELFKKLEFKQLLADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEA 317 Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSY---------------------LKKFFENEHFLK 464 TI +L G N L IL + L + EN + K Sbjct: 318 TIHFELD--------GGNYLRNNILKFSLFTGEKHIVINADDIINYAELVSWLENPNTKK 369 Query: 465 IGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKEIL- 521 + ++ K + HR GI ++ DIML SY++D R+ D+ S+ + S+ + ++ Sbjct: 370 VVYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISDVQSVVSLYGQSFVKDDVSI 429 Query: 522 --KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LD 573 K +K +P + + V I +P + +K L Y + L+ Sbjct: 430 YGKGKKFKVPEVDVLNPYVAS--------ITDAIYFAKPNM--DKQLEEYNQVELLADLE 479 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 P+ ++S+ME GI D L+++ EI + L L NI+D +GE FN++SPKQLG +L Sbjct: 480 LPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNINSPKQLGVVL 539 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 F L+ P KTKTG + T LEQ+ G++PII ILE+RQLSK++STY + L I+ Sbjct: 540 FETLQLPVIKKTKTG-YSTAVDVLEQLQ-GEHPIIDYILEYRQLSKLQSTYVEGLQKVIS 597 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADY 750 QR+HT ++ TGRL+S++PNLQNIP++ + G+KIR+AF PT K ++SADY Sbjct: 598 D-DQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAF--KPTSKDSVILSADY 654 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELR+LAHI + + + F N DIH A ++FGV ++V MRR AK +NF I+Y Sbjct: 655 SQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVY 714 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 GIS + L+ L I R +A +I Y FPG+ +Y+ + G+VET+ RR + Sbjct: 715 GISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIP 774 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 +I S ++R ER A+N PIQGSAADI + AM+ + +++ K+LLQ+HDEL+F Sbjct: 775 DITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIF 834 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EVP+ E+ + S+ + ME A + L VPLKV+ W Sbjct: 835 EVPKSEVDSFSEFVEEIMENA----LQLDVPLKVDSSYGATW 872 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 120/341 (35%), Positives = 178/341 (52%), Gaps = 31/341 (9%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEKPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P +R A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEADKAGFQTIIITGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + + I KK +E + E Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEH-LILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + LE L+ I K LEF +L+ Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLL------------ 283 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338 DI+ + + AIE + +T+ F+SL + T Sbjct: 284 ------ADIDQSASGEDAIEKTFEIETSFDNVDFTSLKEAT 318 >gi|237716864|ref|ZP_04547345.1| DNA polymerase I [Bacteroides sp. D1] gi|229442847|gb|EEO48638.1| DNA polymerase I [Bacteroides sp. D1] Length = 504 Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 201/507 (39%), Positives = 305/507 (60%), Gaps = 12/507 (2%) Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528 +VL YG ++G D M+ YVL H + +A+ +L Y E++ + K+ Sbjct: 2 IVLQNYGAVVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 60 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + + V +A E++++ L+L +L +L ++ ++ P++ V+ +E G+ Sbjct: 61 NMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGV 120 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK-TKT 647 +D + L+Q SA + + +E+ IY+L+GE FN++SPKQ+G++LF KLK AK TKT Sbjct: 121 LLDTEALQQSSAHFTAQMEQIEKEIYELAGETFNIASPKQVGEVLFDKLKIVEKAKKTKT 180 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 GQ+ T+ + LE + +P+++ ILE R L K+ TY D+LP IN RT RVHT ++ Sbjct: 181 GQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPLLINPRTGRVHTSFNQTV 239 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S PNLQNIPI+ + G++IR+AFI SADYSQIELRI+AH+++ + Sbjct: 240 TATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNM 299 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F ++ DIH AA+I+ ++++ V MRR AKT NF IIYGIS F LA ++ + R E Sbjct: 300 IDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKE 359 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A + I YF +PG+ Y++K+ ++ GYVETIF R+ +INS + +R ER A Sbjct: 360 AKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNA 419 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 INAPIQGSAADI + AM +++ + + KM+LQ+HDEL F VP E +I++ Sbjct: 420 INAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFSVPVNEKERVEEIVIEE 479 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 MEKA + VPLK + NW E Sbjct: 480 MEKA----YRMHVPLKADCGWGKNWLE 502 >gi|258645581|ref|ZP_05733050.1| DNA polymerase I [Dialister invisus DSM 15470] gi|260402939|gb|EEW96486.1| DNA polymerase I [Dialister invisus DSM 15470] Length = 858 Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 189/493 (38%), Positives = 292/493 (59%), Gaps = 26/493 (5%) Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545 F D+ L+SYVL+ R+++ ++ +A+ + + P+ +E ++ Sbjct: 386 FYDMTLVSYVLEPTRTTYPLSYMAELF-------------GTSPVFPDHLDTEEEKSVCI 432 Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI--- 602 +L L+ + + ++E+++ P+ V+++ME GI DQ + V E+ Sbjct: 433 CGFLLSLYATSLEHMKSNGVQSLFEKIENPLAAVLAEMEKAGIATDQKRWEAVCHELKVQ 492 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + LLSL IY+ +GE+FN++SPKQLG ILF K+ P+G KTK G +TA D+ ++ Sbjct: 493 ERKLLSL---IYEAAGEEFNVNSPKQLGVILFEKMGMPAGKKTKNGY--STAADVLEMLA 547 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 P +K+ILE+R +SK+ STY ++LP I T R+HT ++ T TGRL+S +PNLQN Sbjct: 548 KSYPFVKDILEYRTISKLISTYLEALPLLIRPETGRIHTSFNQTVTATGRLSSSDPNLQN 607 Query: 723 IPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 IP++T G++IR F+ P IS+DYSQ+ELR+LAH++ L + F N DIHR Sbjct: 608 IPVRTAEGRQIRSLFVPGPGYDCFISSDYSQVELRVLAHMSGDESLIRAFRNKEDIHRRT 667 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE+ G+ E+V+ + R HAK +NF IIYGIS F LA QL I R EA YIK+YF R+P Sbjct: 668 AAEVLGIPFEEVTSEQRSHAKAVNFGIIYGISDFGLANQLGISRGEAGTYIKKYFERYPY 727 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 IH +++ +++G +T+FGR +I S + R+ ER A+N PIQG+AADI + Sbjct: 728 IHAFMKSMVEDAQESGRAKTLFGRYRELPDIRSSNFNRRSFAERTAMNTPIQGTAADIMK 787 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI V + +++ +++LLQ+HDELV E EE ++ +ME + L+VP Sbjct: 788 LAMIEVSRRIKEEGYKSRVLLQVHDELVVEAVSEEKENLKTLLKETMESV----VELKVP 843 Query: 962 LKVNIKVSNNWQE 974 L ++ NW E Sbjct: 844 LIADVHEGKNWAE 856 Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 109/291 (37%), Positives = 165/291 (56%), Gaps = 13/291 (4%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E L +VDGSS +YRAF+ P LS + G+P NA+ GF NML+ + +N E + AV Sbjct: 2 EKKLVVVDGSSLLYRAFFGLPPLS--YHGIPTNAVMGFLNMLYDIYKNFDPE----YMAV 55 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E+Y +YKA R P L+PQ L+R A + G E+ G+E DDI+ T Sbjct: 56 SFDKNKQTFRSEVYKEYKATRKPAPPELVPQFALIREALRTLGAAVYEVDGYEGDDILGT 115 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 EKE V I++ D+D +QL + T +Y T + + E V++K+GI P ++ Sbjct: 116 LAARYEKE-LPVFIVTGDRDALQLATKDTTVYITQRGVSQMAAMTPEAVVEKYGITPRQV 174 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DNIPG+PG+G KTAA LL +Y L+N+ + IK + + E Sbjct: 175 IDMKALMGDTSDNIPGVPGVGEKTAAKLLSQYQTLDNLYGHVGEIKGAVGK-RLAANKEL 233 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 A LS +L ++TDVP LE + + + ++ F L ++ +R +T Sbjct: 234 AYLSYRLATIKTDVPFEAALEEM-KQPVHFEEMMEFFHRLGLERIADRYST 283 >gi|322388444|ref|ZP_08062047.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779] gi|321140757|gb|EFX36259.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779] Length = 889 Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 211/529 (39%), Positives = 315/529 (59%), Gaps = 19/529 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509 LK+F E LK+ ++ K K++L+R+G+ ++ D L Y+L S +++I++IA Sbjct: 371 LKEFLEKTP-LKV-YDFKKAKVLLNRFGLDLQAPAFDSRLAKYLL-STVENNEISTIANL 427 Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 Q +L K K +IP EH + V+++ +L KL L Sbjct: 428 YGQTYLVDDETFYGKGVKKAIP----ERETFLEHLVRKVAVLVETEPVLLEKLSENGQLD 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + +++P+ V+++MEI GI++ ++ L ++ AE + L + IY+L+GE+FN++SPK Sbjct: 484 LLYDMEQPLALVLAKMEIAGIKVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG++LF KL P KT +TA D+ + PI+K IL++RQ++KI+STY Sbjct: 544 QLGELLFEKLGLPIEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 603 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746 L + I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+ Sbjct: 604 LQDWI-LADGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 662 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S+DYSQIELR+LAHI+K L + F+ DIH A +FG+ E V+P RR+AK +N Sbjct: 663 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 722 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F ++YGIS F L+ L I R EA YI YF RFPGI Y+++ R GYVET+F R Sbjct: 723 FGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 782 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R +INS +IR ER AIN+PIQGSAADI + AMI + K+L + TKMLLQ+H Sbjct: 783 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGRYQTKMLLQVH 842 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DE+V EVP+ E+ + +++ +ME+A I L VPL + W E Sbjct: 843 DEIVLEVPKSELASIKKLVKQTMEEA----IQLSVPLIADENEGVTWYE 887 Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 115/285 (40%), Positives = 154/285 (54%), Gaps = 11/285 (3%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DGSS +RAF+A L K+D GL NAI GF ML LL+ + SH V Sbjct: 18 LLLIDGSSVAFRAFFALYQQLDRFKNDNGLHTNAIYGFHLMLNHLLERVQ----PSHILV 73 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDII T Sbjct: 74 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADDIIGT 133 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 +A+K+ F VTI+S DKDL+QL T + + K E E++++K GI P + Sbjct: 134 LGRLAKKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPEYLMEKMGITPAQF 193 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD DNIPG+ IG KT LL E+G+LE I N +K K +EN++ E Sbjct: 194 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDSMKASKMKENLVNDKEQ 253 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 A LS+ L + T PI I L+ L+ + L F + F +L Sbjct: 254 AFLSKTLATIDTKAPIEISLDDLVYSGPDIENLGKFYDEMGFKQL 298 >gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211] gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211] Length = 857 Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 192/494 (38%), Positives = 293/494 (59%), Gaps = 32/494 (6%) Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539 G+S+ ED +L++Y+LD+ ++ + +AQ L + P D Sbjct: 391 GVSVEPGEDPLLIAYLLDNTVTNASL--LAQAHLG-----------APWPDD-------- 429 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 A + QL LRP+L EK +Y+ +++P+ V+++ME+ G+++D L+ +S Sbjct: 430 --APTRALATAQLLTALRPQLD-EKRAQLYKDVERPLAHVLARMEVRGVRLDSAYLRGLS 486 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTAQDLE 658 + L+ I +L+G F+++S QL +L+ +L SG KTK TG+ T LE Sbjct: 487 DSLGARAQELDARIQELAGHPFSVNSRDQLESVLYDELGLASGKKTKLTGKRSTAVSALE 546 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 + ++PII +LE+R+L+K+K TY D LPN +N T R+HT ++ + TGRL+SL P Sbjct: 547 PLR-DEHPIIPLLLEYRELTKLKGTYLDPLPNLVNPLTGRLHTTFAQTAVATGRLSSLNP 605 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIPI+++ G++IR+ FI+ LISADYSQIELR+LAHIA + + F DIH Sbjct: 606 NLQNIPIRSETGREIRKGFIADDGFCLISADYSQIELRLLAHIADDALMQEAFVGGADIH 665 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 R AA++ GV + V+P RR AKT+NF ++YG+S RL+ L I +EA+ +I+RYF Sbjct: 666 RRTAAQVLGVMEDLVTPNQRRAAKTVNFGVLYGMSAHRLSNDLGISFAEASRFIERYFAT 725 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +P I EYI+ T F R++GYVET++GRR E+ S ++R ER A N PIQG+AAD Sbjct: 726 YPRIREYIDATLAFGREHGYVETMYGRRRLVPELRSANRTMREAGERVAYNMPIQGTAAD 785 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I + AM+ + + L L ++LLQ+HDEL+ E P + + + ME + L Sbjct: 786 IIKIAMVELDEQLS--ALGARLLLQVHDELLIEAPSDRADEVAALTRRVMEGV----VTL 839 Query: 959 RVPLKVNIKVSNNW 972 +VPL+V I NW Sbjct: 840 KVPLRVEIGTGPNW 853 Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 105/302 (34%), Positives = 165/302 (54%), Gaps = 14/302 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + + L+DG + YR+++A P L+ G NAI GF + +L ++ +++ Sbjct: 4 MTAPDTVVLIDGHALAYRSYFAIPPLTNSA-GESTNAILGFLRLTLRL-----EKQVSNQ 57 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD P TFR+E + YKA R + PE L Q+ +R A G+P +E+ G+EADD+ Sbjct: 58 VIVVFDPPVKTFRHEQFEGYKAGRAQTPEDLPKQINRIRSLVDAMGLPRLEVPGYEADDV 117 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T AE +G V I+++D+D QL+S + T + + + V++K+G+ + V Sbjct: 118 IGTLAKRAEAQGLNVRIVTSDRDAYQLLSERVKVL-TSDFKLLGPDEVLEKYGVTVGQWV 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAE 238 +ALTGD+ DNIPG GIG KTAA LLQE+G+L+ +L A +K K +E I + Sbjct: 177 DYRALTGDASDNIPGAKGIGPKTAAKLLQEHGSLDAVLQAAEAGALKPKGTQEKIAASVQ 236 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPR--LISFLKALEFTKLINRVATTYDCDA 296 SR+L + TD+P+ + L L +G R ++ L+ LE L+ V A Sbjct: 237 DVLFSRELSCMVTDLPLDVELGAL---RGHGDRDAALAILRELELNSLLKDVDALMSAQA 293 Query: 297 AN 298 A Sbjct: 294 AG 295 >gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876] gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876] Length = 873 Score = 344 bits (882), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 190/490 (38%), Positives = 299/490 (61%), Gaps = 12/490 (2%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIE 544 DI +M+Y+L+ ++ IA ++ T R +I+ K S + D V+ A+E Sbjct: 391 DIAIMAYLLNPLLQEYEYNDIANDFMGITVEGRSDIIGKNKVSSYLTDGFDKIVKLFALE 450 Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 + V + +L + VY ++ P+I V+ ME GI +++D LKQ E+S Sbjct: 451 -AYVAFNSFDEAMKRLRETDMEKVYHDIELPVIYVLKSMEKYGIAVNKDALKQYGDELSV 509 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664 + LE++IY +G +FN++SPKQLG++LF KL P G KTKTG + T+A LE+++ D Sbjct: 510 KIKDLEQSIYKEAGTEFNINSPKQLGEVLFEKLNLPCGKKTKTG-YSTSADVLEKLSA-D 567 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 PI+ +ILE+R L+K+KSTYAD L +I R+H+ ++ T TGR++S EPNLQNIP Sbjct: 568 YPIVDSILEYRTLAKLKSTYADGLAEYI--VDGRIHSTFNQTITATGRISSTEPNLQNIP 625 Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 I+ +LG+KIR+ F+ + ADYSQIELR+LAH++ L + + DIH++ A++ Sbjct: 626 IRMELGRKIRKVFVPEDGFIFMDADYSQIELRLLAHMSGDDTLIEAYNEDRDIHKITASK 685 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +F +++V+P+ R +AK +NF I+YGIS F L+ L I + EA +YI YF+ + + Sbjct: 686 VFKTPLDEVTPRQRSNAKAVNFGIVYGISSFGLSRDLSISKKEAKEYIDEYFNTYKTLKN 745 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 Y++ ++NGY +TI+GRR E++S R ER A+N+P+QG+AADI + AM Sbjct: 746 YLDNLVKSAKENGYTKTIYGRRRPVPELSSGNFMQRQFGERIAMNSPLQGTAADIIKIAM 805 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 I+V+K L++ +L ++++LQIHDEL+ E E +I+ M A LRVPL + Sbjct: 806 INVYKRLKNERLESRLILQIHDELLIETKIGEEEQVRKILSEEMVNAA----TLRVPLAI 861 Query: 965 NIKVSNNWQE 974 +I +W E Sbjct: 862 DIHSGKDWYE 871 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 97/262 (37%), Positives = 153/262 (58%), Gaps = 11/262 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N+L L+DG S + RAFY P+L+ H+G+ NAI GF N++ K +++ + + H AV Sbjct: 2 NNLLLIDGHSIMNRAFYGIPMLTN-HEGIHTNAIYGFINIMLKAMEDEK----SDHIAVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD A TFR+++Y YK R +P L Q+P+++ + IP I ++G+EADDI+ T Sbjct: 57 FDLKAPTFRHKMYEMYKGTRKPMPAELHEQVPVIKEILASMNIPVITLEGYEADDILGTV 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178 A+ G+ V I+S D+DL+QL L T+K E E V++K+ P + Sbjct: 117 GKKAQSLGYNVVILSGDRDLLQLADEHIKIRLPKTIKGRTEIENYYPEDVMEKYMATPSE 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + L+AL GDS DNIPG+PGIG KTA ++ +Y ++EN + + K + ++ E + Sbjct: 177 FIDLKALMGDSSDNIPGVPGIGEKTAMSIISKYHSIENAYEHVEELTPAKAKNSLRENYD 236 Query: 239 TARLSRKLVMLRTDVPITIPLE 260 A+LS+ L + TD P+ +E Sbjct: 237 LAKLSKVLATIETDAPVEFNIE 258 >gi|332687082|ref|YP_004456856.1| DNA polymerase I [Melissococcus plutonius ATCC 35311] gi|332371091|dbj|BAK22047.1| DNA polymerase I [Melissococcus plutonius ATCC 35311] Length = 887 Score = 344 bits (882), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 206/513 (40%), Positives = 304/513 (59%), Gaps = 29/513 (5%) Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSR--KSSI 528 L+RY M+G DI+L +Y+L++ ++ DI +A+++ YT E + R K + Sbjct: 389 ALNRYVGKMQGISFDILLAAYLLNTNDTNTDIECVARQY-GYTDIQSDEAVYDRGAKKKV 447 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 P +K H I L L L+ + +++ ++ P+ +++ MEITGI Sbjct: 448 PQEK---EIFYNHLAHKIKAIEYLSEKLAADLVEKNQANLFSEMELPLSRILADMEITGI 504 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +D L+++ E S L ++E+ IY +GE+FN++SPKQLG ILF K+ P KTKTG Sbjct: 505 HVDAHRLEEMQGEFSDQLKAIEQKIYTEAGEEFNINSPKQLGVILFEKMGLPVIKKTKTG 564 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL-----PNHINKRTQRVHTFY 703 + T LEQ+ PI+++IL +RQ++KI+STY + L P+H +VHT Y Sbjct: 565 -YSTAVDVLEQLK-ERAPIVEDILIYRQIAKIQSTYVEGLLKVIQPDH------KVHTRY 616 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIA 762 T TGRL+S++PNLQNIPI+ + G+KIR+AFI LI S+DYSQIELR+LAHI+ Sbjct: 617 LQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQAFIPREKDWLIYSSDYSQIELRVLAHIS 676 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 L F DIH A +F ++ E+V+P MRR AK +NF I+YGIS + L+ L Sbjct: 677 NDEHLKAAFLEQQDIHASTAMRVFNLSSPEEVTPNMRRQAKAVNFGIVYGISDYGLSKNL 736 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I R +A YI YF+++P + Y+E+ + GYVET++ RR + +INS ++R+ Sbjct: 737 EISRQQAQQYIDTYFNKYPSVKTYMEEIVREAKDKGYVETLYHRRRYLKDINSRNYNLRS 796 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER AIN PIQGSAADI + AMI + + L++ + MLLQ+HDELVFEVP E+ Sbjct: 797 FAERTAINTPIQGSAADILKIAMIQMDRRLKEENIQATMLLQVHDELVFEVPAAELEKLD 856 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I+ MEK C ++L VPL + W E Sbjct: 857 KIVKEVMEK-C---VSLTVPLIADSNWGKTWYE 885 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 161/290 (55%), Gaps = 12/290 (4%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L LVDG+S +RAF+A L R +GL NAI F M +N + +H V Sbjct: 6 LLLVDGNSVAFRAFFALHNSLERFKNQNGLHTNAIYAFNTMF----ENVMAKEEPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFRN +Y DYKA R K P+ Q+P ++ + G+ E+ +EADDII T Sbjct: 62 AFDAGKTTFRNAMYEDYKAGRAKTPDEFREQMPYIKELLEGLGVKHYELANYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178 KE + V I+S D+DL QL + T + TVK E E++ +K+ G+ P++ Sbjct: 122 LATKVPKEEYDVVILSGDRDLTQLATDTIKVDITVKGVSDIESCTPEYMFEKYDGLCPQQ 181 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ +G KTA LL+EYG++E + + +K K +EN++ E Sbjct: 182 IIDIKGLAGDASDNIPGVTKVGEKTAIKLLKEYGSVEGVYNHIDEMKTSKLKENLIRDKE 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 A LS++L + TD P+ + ++ L+ N +L+ F + + F + + ++ Sbjct: 242 KAFLSKQLATIDTDAPVNVEIDQLVYHGKNLDKLVPFYREMNFKQFLGKL 291 >gi|118586552|ref|ZP_01543994.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163] gi|118432993|gb|EAV39717.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163] Length = 911 Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 200/531 (37%), Positives = 318/531 (59%), Gaps = 16/531 (3%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 S ++K F+ + K N K ++L+R G+ + + D +L+SY+LD+ + + +A++A Sbjct: 390 SVVRKLFKGD-LPKYVFNAKELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQLATLA 448 Query: 510 QKWLSY--TRKEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 ++ + + E+ S K IP + + + H ++ I +L KL + Sbjct: 449 NRFNVFLESDAEVYGSGVKFKIPEN---NETLFSHMANKASTISKLHDPSMKKLSDHQQA 505 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 +Y +++ P+ V++ MEI GI++DQ LK++ E + + LE+ IY+ +G++FN++SP Sbjct: 506 ELYRQIELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQEFNINSP 565 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQL D+LF +K P KTKTG + T A LE++ P + IL++RQL+K+ STY Sbjct: 566 KQLADLLFVHMKIPPIKKTKTG-YSTAANVLEEL-AEKYPFVGLILQYRQLAKLNSTYVK 623 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745 L +N ++HT Y T TGRL+S++PN+QNIP + + G++IR+AF+ S ++ Sbjct: 624 GLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIPDRDEEGKRIRKAFVPSHEGWEI 683 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804 +DYSQIELR+LAH+ L + FE+ DIH A IFG++ +K++ RR AK + Sbjct: 684 FGSDYSQIELRVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAV 743 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS F LA +L I R E + I+ YFH FP + +I+ + GYVETI Sbjct: 744 NFGIVYGISDFGLAQRLGISRIEGKEIIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQ 803 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I+S ++R+ ER A N PIQGSAADI + AMI + ++L+D+ L KMLLQ+ Sbjct: 804 RRRYLPDIHSKNFNLRSFAERTATNTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQV 863 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975 HDEL+FE P++EI +++ M+ A + L VPL+V NW +E Sbjct: 864 HDELIFEAPKQEIDILEELVPKVMDSA----VKLNVPLRVEAHHGVNWYDE 910 Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 106/286 (37%), Positives = 161/286 (56%), Gaps = 16/286 (5%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L R H GL NA+ F N +++ E + +A+ Sbjct: 24 LLLIDGNSLAFRAFYAMYNQLDRMVAHTGLHTNALVAFNNFFDQVV-----EKMNPDYAL 78 Query: 64 IF---DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 + A TFR +I+ DYK +R P L Q P +R GI + E+ GFEADDI Sbjct: 79 VAWDAGKGATTFRAKIFDDYKGDRQTTPPELSEQFPYLRKMVDLHGIHSYELPGFEADDI 138 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG-IP 175 I TY+ +AEK G TII+ D+DL QLV+ + T K ++ + + +KWG I Sbjct: 139 IGTYSKLAEKAGLKTTIITGDRDLTQLVTDNVSVNVTKKGVTELDRYTPKFLAEKWGGIT 198 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ +++LTGD+ D+ PG+ +G KTA LL E+G+L+ I + +K K +ENIL Sbjct: 199 PSQVIEMKSLTGDTSDHYPGVTKVGEKTAIKLLNEFGSLDGIYQHIDSMKTSKLKENILN 258 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 E+A + +L +RTD P+ + ++ LI + N LI F + L+F Sbjct: 259 DKESAYRAHELATIRTDAPVELEMKELINQPINFQELIPFYEELDF 304 >gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10] gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10] Length = 896 Score = 343 bits (881), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 206/532 (38%), Positives = 327/532 (61%), Gaps = 20/532 (3%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIAS 507 +++ L++ FE++ K GH++K L +GI + D + +Y+L+ RS++ I+ Sbjct: 373 VVNELREIFESKDIEKYGHDLKNLYKYLKSHGIELENVIFDTFIAAYILEPTRSTYTISE 432 Query: 508 IAQKWL--SYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 +++ L S T EIL K K +S S+V A+ N I L LRP + Sbjct: 433 LSEDKLKQSITPVEILYDKHGKRLEQGQDVSSSEVCAAAV---NAIYGLTQKLRPIIRDN 489 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 +Y +++ P+++V++ ME+ G ++D + LK S E+ L+ LE IY +GE FN+ Sbjct: 490 GQDELYYKIELPLVEVLANMELRGFKVDVENLKAYSKELDSRLVILENEIYMQAGETFNI 549 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 +SPKQLG ILF KL P G KTKTG + T+A+ LEQ++ + I++ ILE+RQL K+KST Sbjct: 550 NSPKQLGVILFEKLGLPVGKKTKTG-YSTSAEVLEQLSY-KHEIVERILEYRQLMKLKST 607 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 YAD L + + ++ ++H+ ++ T TGR++S EPNLQNIP+K ++G+KIR+ FI PT Sbjct: 608 YADGLLS-VLEQDGKIHSNFNQTVTATGRISSTEPNLQNIPVKLEMGRKIRKVFI--PTN 664 Query: 744 K---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 L+ ADYSQIELR+LAHI + + F N+ DIH A+++FG+ E+VS MR Sbjct: 665 SDYVLLDADYSQIELRVLAHITGDPNMIEAFINNEDIHTTTASKVFGIPPEEVSSLMRSR 724 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 AK +NF I+YGI F L+ + + + EA YI Y ++ + EY+ T ++ G+V Sbjct: 725 AKAVNFGIVYGIGDFSLSKDIGVTKKEARKYIDDYLDKYSKVKEYMSDTVEKGKEFGFVT 784 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 T++ RR + E+ S ++R+ ER A+N PIQGSAADI + +M+ V+ L+ KL +K+ Sbjct: 785 TLYNRRRYLPELKSSNFNMRSFGERVAMNTPIQGSAADIIKISMVKVYTELKKRKLKSKL 844 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +LQ+HDEL+ E + E+ S+++ ME A + L+VPL V++K ++W Sbjct: 845 ILQVHDELIVETEKSELEEVSKLLKDCMENA----VQLKVPLTVDVKHGDSW 892 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 107/301 (35%), Positives = 164/301 (54%), Gaps = 20/301 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRK-----HDGLPVNAIAGFCNMLWKLLQNSRKE 55 M E+ + +VDG+S + RAFY LSR +GL NA+ GF N+L K LQ+ Sbjct: 1 MNSEDKILVVDGNSILNRAFYG---LSRAAMLTTSEGLYTNAVFGFINILSKHLQDEN-- 55 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 + V FD A TFR++ Y YKA R +P L Q+P+++ A I +E++GF Sbjct: 56 --PKYVCVAFDLKAPTFRHKEYDQYKAQRKGMPNELAVQVPIIKQVLDAMNIARVEVEGF 113 Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHV 168 EADDI+ T + AEK+G +++ D+D +QL S P T T +E D E V Sbjct: 114 EADDILGTVSSYAEKQGMKTILLTGDRDSLQLASNYTRIKLPVTRANKTETDE-YDYEKV 172 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 I+K+G+ P +++ ++ L GD+ DNIPG+PGIG KTA L++++ +LE + N ++ +K Sbjct: 173 IEKYGVTPGQLIDVKGLMGDTSDNIPGVPGIGEKTALALIKKFNSLEELYENIDKVDKKG 232 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 RE + E A + ++L + VP L + + +L S K LEF LI + Sbjct: 233 VREKLENNKELAFMCKRLATIYRKVPGVENLNDFARLEIDKEKLYSIFKRLEFKTLIEKF 292 Query: 289 A 289 Sbjct: 293 G 293 >gi|239637989|ref|ZP_04678950.1| DNA polymerase I [Staphylococcus warneri L37603] gi|239596552|gb|EEQ79088.1| DNA polymerase I [Staphylococcus warneri L37603] Length = 876 Score = 343 bits (881), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 209/531 (39%), Positives = 310/531 (58%), Gaps = 21/531 (3%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASI 508 S L + EN + K ++ K +V HR I ++ + D+ML SY++D R+ D+ S+ Sbjct: 355 FSDLVNWLENPNTAKTVYDAKKTYVVAHRLDIDIQNIQFDVMLSSYIIDPSRTIDDVNSV 414 Query: 509 ----AQKWLSYTRKEILKSRKSSIPIDKISDSQVQE--HAIENSNVILQLWLLLRPKLIV 562 Q ++ K +K IP D+I + V A+ S +Q L + Sbjct: 415 VSLYGQHYVQDNVAIYGKGKKHHIPEDEILNKHVASIIEAVSASKSEMQNQL---KEYNQ 471 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 E LL L+ P+ +++S+ME GI D + L+ + EI + L L +NI++ +GE+FN Sbjct: 472 ESLL---ADLELPLAEILSEMEEIGIYTDVNDLQHMEKEIQEKLDVLIKNIHEAAGEEFN 528 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 ++SPKQLG +LF L+ P KTKTG + T LEQ+ G +PII ILE+RQLSK++S Sbjct: 529 INSPKQLGVVLFETLELPVIKKTKTG-YSTAVDVLEQLQ-GQHPIIDYILEYRQLSKLQS 586 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY + L I++ R+HT ++ TGRL+S++PNLQNIPI+ + G+KIR+AF T Sbjct: 587 TYVEGLQKVISE-DNRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPTST 645 Query: 743 KKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 +I SADYSQIELR+LAHI + + + F N DIH A ++F V ++V MRR A Sbjct: 646 DSVILSADYSQIELRVLAHITQDESMKEAFINGHDIHTATAMKVFDVGADEVDSLMRRQA 705 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ + +VET Sbjct: 706 KAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAKAQDFVET 765 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 + RR + +I S ++R+ ER A+N PIQGSAADI + AM+ +K ++ K K+L Sbjct: 766 LLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVQFNKEVQHTKYHAKLL 825 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LQ+HDEL+FEVP++E+ + SQ + ME A + L VPLKV W Sbjct: 826 LQVHDELIFEVPKDEVESFSQFVEDIMESA----LELDVPLKVESSYGATW 872 Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 108/291 (37%), Positives = 163/291 (56%), Gaps = 13/291 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEQPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R K P L Q P +R A+ I E++ +EADDII T Sbjct: 57 FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELENYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SNEADKAGFETIIITGDRDLTQLATDHVTIYYT-KKGVTDVDHYTPDFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + N + + KK +E + + Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFNTVEGVYDNINSVSGKKLKEKLENSKD 235 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILE-DCNGPRLISFLKALEFTKLINRV 288 A +S+ L + + PI + LE +E D + I K LEF +L+ + Sbjct: 236 DALMSKDLATINVESPIEVNLEDTKMEADIDETEKIELFKKLEFNQLLAEI 286 >gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 876 Score = 343 bits (880), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 206/529 (38%), Positives = 305/529 (57%), Gaps = 29/529 (5%) Query: 456 FFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLS 514 + EN+ KI ++ K +V HR I+++ D+ML SY++D R+ D+ S+ + Sbjct: 361 WLENDKTEKIVYDAKKSYIVAHRLDIAIKHIVFDVMLASYIIDPSRTIDDVNSVVSYFDQ 420 Query: 515 YTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570 + KE + K +K +P D+I D V I++ +PK+ E L Y Sbjct: 421 HYVKESIEVFGKGKKRHVPEDEILDHHV--------GTIIEAINKTKPKM--EAQLEEYN 470 Query: 571 R------LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 + L+ P+ ++S+ME TGI L+++ EI L L NIY+ +GE FN++ Sbjct: 471 QTNLLDDLELPLARILSEMEETGIYTVATDLQEMEKEIQAKLDVLINNIYNAAGESFNIN 530 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG +LF L+ P KTKTG + T LEQ+ G +PII ILE+R LSK++STY Sbjct: 531 SPKQLGVVLFETLELPVIKKTKTG-YSTAVDVLEQLQ-GQHPIIDYILEYRTLSKLQSTY 588 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 + L I++ R+HT ++ TGRL+S++PNLQNIPI+ + G++IR+AF S Sbjct: 589 VEGLQKVISE-DNRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRRIRKAFKSSDDNN 647 Query: 745 LI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 +I SADYSQIELR+LAHI + + Q F N DIH A ++F V ++V MRR AK Sbjct: 648 VIFSADYSQIELRVLAHITQDESMKQAFINDEDIHTATAMKVFNVQPDEVDSLMRRQAKA 707 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+E + GYVET+ Sbjct: 708 VNFGIVYGISDYGLSQSLGITRKQAKQFIDDYLDSFPGVKQYMEDIVKDCKAQGYVETLL 767 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + +I S ++R ER A+N PIQGSAADI + AM++ ++ ++LLQ Sbjct: 768 HRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVNFVNEVKHTDFHAQLLLQ 827 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+FE+P++E+ S+ I M+ A + L VPLKV W Sbjct: 828 VHDELIFELPKDEVEAFSEFIEEIMDNA----LALDVPLKVETSHGKTW 872 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 116/341 (34%), Positives = 173/341 (50%), Gaps = 31/341 (9%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLL K G+ NA+ GF +L K++ KE +HF V Sbjct: 2 NKLILIDGNSLSFRAFYALPLLQNKA-GIHTNAVYGFAMLLEKII----KEEQPTHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YK R K P L Q P VR A+ I E+ +EADDII T Sbjct: 57 FDAGKTTFRHEQYSEYKGGRQKTPPELSEQFPYVRQLLDAYQIKRYELDNYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178 + A E F I++ D+DL QL + +Y T K+ D++H ++ G+ P + Sbjct: 117 SKQANAEKFETIIVTGDRDLTQLATDDVTIYYT-KKGVTDVDHYTPEFIAEKYDGLVPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL+++ +EN+ + + KK +E + Sbjct: 176 IIDMKGLMGDASDNIPGVAGVGEKTAIKLLKKFSTVENVYNHIEEVSGKKLKEKLENSKS 235 Query: 239 TARLSRKLVMLRTDVPITIPLEHLIL-EDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S++L + D PI + L L E + I K LEF +L+++V Sbjct: 236 DALMSKELATINCDSPIEVTLADTKLPESPDSTAKIDIFKKLEFKQLLDQV--------- 286 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQT 338 D+ T +E EI D F+ LS+ T Sbjct: 287 -------DVEGTHTSAEELELEITSD--FSNVDFNELSEAT 318 >gi|302670972|ref|YP_003830932.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316] gi|302395445|gb|ADL34350.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316] Length = 740 Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 190/493 (38%), Positives = 303/493 (61%), Gaps = 13/493 (2%) Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKSRKSSIPIDKISDSQVQEH 541 R F+D ++ +Y+++ ++ ++++ +A+++L S +K L +KS I + D V ++ Sbjct: 257 RCFDD-LIAAYLVNPNKNDYEVSDVAKEYLGLSLEKKIDLFGKKS---IREADDKSVVQY 312 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 A + + V + L+ KL ++L ++ ++ P+ V+ ME GI +D LK + Sbjct: 313 ACKCAFVCFKAEPLICKKLEKLQMLDLFYNIEMPLSYVLYSMEKEGIIARRDELKAYGDK 372 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + + LE++IY+ +G +FN++SPKQLG+ILF +L P+ KTK+G + T A LE++ Sbjct: 373 LQIRISELEKSIYEAAGVEFNINSPKQLGEILFERLGLPAEKKTKSG-YSTAADVLEKL- 430 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D PI+ +ILE+R L+K+KSTYAD L +I + R+HT ++ T TGR++S EPNLQ Sbjct: 431 APDYPIVADILEYRGLAKLKSTYADGLAAYI-EEDGRIHTSFNQTITATGRISSTEPNLQ 489 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++T+LG+ IR+ F+ ADYSQIELRILAH+++ L + DIH + Sbjct: 490 NIPMRTELGRLIRKVFVPKEDHVFADADYSQIELRILAHMSEDQELIAAYHEGKDIHGIT 549 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A+++F V E+V+P RR+AK +NF I+YGIS F L+ L I EA +Y+ +YF +PG Sbjct: 550 ASKVFHVPFEEVTPLQRRNAKAVNFGIVYGISSFGLSQDLSISVKEAKEYMDKYFETYPG 609 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y E+ ++ GY T+FGRR E+ + +R ER A+NAPIQG+AADI + Sbjct: 610 VKAYQERVIADAKEKGYSLTMFGRRRPIPELKASNYMMRQFGERVAMNAPIQGTAADIMK 669 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI+V+ L+ KL +K++LQIHDELV E ++E + ++ ME+A +L VP Sbjct: 670 IAMINVYFRLKKEKLVSKLILQIHDELVIETLKDEEEKVTALLTQEMERAA----DLSVP 725 Query: 962 LKVNIKVSNNWQE 974 L +W E Sbjct: 726 LLAECHSGTDWYE 738 >gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] Length = 883 Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 203/541 (37%), Positives = 314/541 (58%), Gaps = 16/541 (2%) Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG 499 GK L K L L FEN H++KYD +L YGIS+ D +L SY+L Sbjct: 351 GKLGLEK-ALKKLAPLFENSRIGFYAHHLKYDLHILKNYGISLANISFDTILASYILTPH 409 Query: 500 RSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556 H + ++ + T+ +++ K+ I + ++ +V + E+ + +L + Sbjct: 410 LRQHSLDALTLEHFGKTKIPTSDLIGKGKNQITMLEVPIEKVCAYCCEDVDYTYRLKQIF 469 Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 +L KL + L+ P++ V+S+ME GI +D +LK + ++ +L LE I+ + Sbjct: 470 ASELKKRKLEPLLFDLELPLLKVLSKMEREGIFLDAPILKTLEKAVNTDLQRLENEIHAI 529 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 + E FNL SPKQL ILF K+K P KT TG + T+A+ LE + + I K +LE+R Sbjct: 530 ADEPFNLKSPKQLSGILFEKMKIPPPKKTATG-YSTSAEVLETLQ-NEYAIAKKMLEFRS 587 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 L K++S+Y ++LP IN +T R+H ++ + TGRL+ +PNLQ IPI+T LG+++R+A Sbjct: 588 LEKLRSSYIETLPKEINPKTGRIHPTFNQSVAATGRLSCQDPNLQQIPIRTPLGREVRKA 647 Query: 737 FISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 F P K+ +SADYSQIELR+LAH ++ L FEN+ DIH AA + + +E+V Sbjct: 648 F--RPEKQGWSYLSADYSQIELRLLAHFSEDPTLISAFENNEDIHTHTAATVLNIPLEQV 705 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 + + RR AK +NF I+YG + L+ +L I EA+ +IK YF R+ + +++E K Sbjct: 706 TKEQRRQAKAVNFGILYGQQAWGLSKELGISLEEASAFIKTYFQRYQRVKDFVESCKEKT 765 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 R+ G TI GR EI+S IR ER A+N P+QG+AAD+ ++AMI + + L Sbjct: 766 RKTGRAMTIIGRERPIPEIDSKNPQIRGAAERLAVNTPLQGTAADLIKKAMIVIDEKLMR 825 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 + M+LQIHDEL+FE+P+ EIT Q+++ SME LRVPL V++ + NW+ Sbjct: 826 GQHLGFMILQIHDELIFEIPDFEITAIEQLVISSMEGV----YQLRVPLTVDVSIGKNWK 881 Query: 974 E 974 E Sbjct: 882 E 882 Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 96/261 (36%), Positives = 149/261 (57%), Gaps = 10/261 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LF++D S ++YR+++A L+ G NA+ GF L KL+++ + H +FD Sbjct: 5 LFIIDASGYLYRSYHAIQNLTNAQ-GESTNALYGFIRSLLKLIKDFEPK----HMVAVFD 59 Query: 67 YPAVTFRNE-IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P T R + +YP+YKANR +PE L Q+ + GIP + + EADD + + Sbjct: 60 GPKGTERRKTLYPNYKANRKAMPEDLRYQIEWAQEFCDLLGIPKLVVPQVEADDTMGSVA 119 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184 AE++G V + ++DKDL QLVS + +T K I + V + +G+ P +M+ A Sbjct: 120 KWAEQKGTEVYLCTSDKDLCQLVSEKIFVLNTHKNNLIMGSKEVKESFGVSPSQMIDYLA 179 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 + GD+ DN+PGIPG G KTAA +L+E G L+++L + ++K KK +E + A TA+LS+ Sbjct: 180 IVGDASDNVPGIPGFGAKTAAKVLEEIGTLDHLLSHPEKLKGKK-QEAVRTSAGTAKLSQ 238 Query: 245 KLVMLRTDVPITIPLEHLILE 265 KLV + D I P E E Sbjct: 239 KLVTI--DTSIDFPKEGEFFE 257 >gi|116490731|ref|YP_810275.1| DNA polymerase I [Oenococcus oeni PSU-1] gi|116091456|gb|ABJ56610.1| DNA polymerase I [Oenococcus oeni PSU-1] Length = 903 Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 199/531 (37%), Positives = 317/531 (59%), Gaps = 16/531 (3%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 S ++K F+ + K N K ++L+R G+ + + D +L+SY+LD+ + + +A++A Sbjct: 382 SVVRKLFKGD-LPKYVFNAKELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQLATLA 440 Query: 510 QKWLSY--TRKEILKSR-KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 ++ + + E+ S K IP + + + H ++ I +L KL + Sbjct: 441 NRFNVFLESDAEVYGSGVKFKIPEN---NETLFSHMANKASTISKLHDPSMKKLSDHQQA 497 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 +Y +++ P+ V++ MEI GI++DQ LK++ E + + LE+ IY+ +G++FN++SP Sbjct: 498 ELYRQIELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQEFNINSP 557 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQL D+LF +K P KTKTG + T A LE++ P + IL++RQL+K+ STY Sbjct: 558 KQLADLLFAHMKIPPIKKTKTG-YSTAANVLEEL-AEKYPFVGLILQYRQLAKLNSTYVK 615 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745 L +N ++HT Y T TGRL+S++PN+QNIP + + G++IR+AF+ S ++ Sbjct: 616 GLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIPDRDEEGKRIRKAFVPSHEGWEI 675 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTI 804 +DYSQIELR+LAH+ L + FE+ DIH A IFG++ +K++ RR AK + Sbjct: 676 FGSDYSQIELRVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAV 735 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS F LA +L R E + I+ YFH FP + +I+ + GYVETI Sbjct: 736 NFGIVYGISDFGLAQRLGTSRIEGKEIIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQ 795 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + +I+S ++R+ ER A N PIQGSAADI + AMI + ++L+D+ L KMLLQ+ Sbjct: 796 RRRYLPDIHSKNFNLRSFAERTATNTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQV 855 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975 HDEL+FE P++EI +++ M+ A + L VPL+V NW +E Sbjct: 856 HDELIFEAPKQEIDILEELVPKVMDSA----VKLNVPLRVEAHHGVNWYDE 902 Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 105/286 (36%), Positives = 161/286 (56%), Gaps = 16/286 (5%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L R H GL NA+ F N +++ E + +A+ Sbjct: 16 LLLIDGNSLAFRAFYAMYNQLDRMVAHTGLHTNALVAFNNFFDQVV-----EKMNPDYAL 70 Query: 64 IF---DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 + A TFR +I+ DYK +R P L Q P +R GI + E+ GFEADDI Sbjct: 71 VAWDAGKGATTFRAKIFDDYKGDRQTTPPELSEQFPYLRKMVDLHGIHSYELPGFEADDI 130 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG-IP 175 I TY+ +AEK G TII+ D+DL QLV+ + T K ++ + + +KWG I Sbjct: 131 IGTYSKLAEKAGLKTTIITGDRDLTQLVTDNVSVNVTKKGVTELDRYTPKFLAEKWGGIT 190 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ +++LTGD+ D+ PG+ +G KTA LL E+G+L+ I + +K K +EN+L Sbjct: 191 PSQVIEMKSLTGDTSDHYPGVTKVGLKTAIKLLNEFGSLDGIYQHIDSMKTSKLKENLLN 250 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 E+A + +L +RTD P+ + ++ LI + N LI F + L+F Sbjct: 251 DKESAYRAHELATIRTDAPVELEMKELINQPINFQELIPFYEELDF 296 >gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] Length = 896 Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 208/536 (38%), Positives = 327/536 (61%), Gaps = 20/536 (3%) Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDI 505 +E L+ L++ FE++ K GH++K L +GI + D + +Y+L+ RS++ I Sbjct: 371 QEALNELREIFESKDIEKYGHDLKNLYKYLKSHGIELENVIFDTFIAAYILEPTRSTYTI 430 Query: 506 ASIAQKWL--SYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561 + + + L S T EIL K K IS S+V A+ N I L LRP + Sbjct: 431 SELYEDKLKQSITPVEILYDKHGKRLQQEQDISSSEVCAAAV---NAIYVLIQKLRPIIR 487 Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 +Y ++ P+++V++ ME+ G ++D + L+ S E+ L+ LE IY +GE F Sbjct: 488 DNGQDELYYEIELPLVEVLADMELRGFKVDVEGLQAYSKEMDSRLVILENEIYMQAGETF 547 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 N++SPKQLG ILF KL P G KTKTG + T A+ LEQ++ + I++ ILE+RQL K+K Sbjct: 548 NINSPKQLGVILFEKLGLPVGKKTKTG-YSTNAEVLEQLSY-KHEIVERILEYRQLMKLK 605 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 STYAD L + + ++ ++H+ ++ T TGR++S EPNLQNIP+K ++G+KIR+ FI P Sbjct: 606 STYADGLLS-VLEQDGKIHSNFNQTVTATGRISSTEPNLQNIPVKLEMGRKIRKVFI--P 662 Query: 742 TKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 T + L+ ADYSQIELR+LAHI + + + F + DIH A+++FG+ E+VS MR Sbjct: 663 TNQDYVLLDADYSQIELRVLAHITDDSNMIEAFLKNEDIHTTTASKVFGIPPEEVSSLMR 722 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 AK +NF I+YGI F L+ + + + EA YI Y ++ + EY+ T ++ G+ Sbjct: 723 SRAKAVNFGIVYGIGDFSLSKDIGVTKKEARQYIDDYLDKYSKVKEYMSDTVEKGKEFGF 782 Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 V T++ RR + E+ S ++R+ ER A+N PIQGSAADI + +M+ V+ L+ KL + Sbjct: 783 VTTLYNRRRYLPELKSSNFNMRSFGERVAMNTPIQGSAADIIKISMVKVYNELKKRKLKS 842 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 K++LQ+HDEL+ E + E+ S+++ ME A + L+VPL V++K ++W E Sbjct: 843 KLILQVHDELIVETEKSELEEVSKLLKDCMENA----VQLKVPLTVDVKHGDSWYE 894 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 165/300 (55%), Gaps = 18/300 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRK-----HDGLPVNAIAGFCNMLWKLLQNSRKE 55 M E+ + +VDG+S + RAFY LSR +GL NA+ GF N+L K LQ+ Sbjct: 1 MNSEDKILVVDGNSILNRAFYG---LSRAAMLTTSEGLYTNAVFGFINILSKYLQDEN-- 55 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 + V FD A TFR++ Y YKA R +P L Q+P+++ A I +E++GF Sbjct: 56 --PKYVCVAFDLKAPTFRHKEYDQYKAQRKGMPNELAVQVPIIKQVLDAMNIARVEVEGF 113 Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEEKIDIEHVI 169 EADDI+ T + AEK+G +++ D+D +QL S T + + + ++ D E V+ Sbjct: 114 EADDILGTVSSYAEKQGLKTILLTGDRDSLQLASGHTRIKLPVTRGNKTETDEYDYEKVV 173 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K+G+ P +++ ++ L GD+ DNIPG+PG+G KTA L+Q++ +LE + N ++++K Sbjct: 174 EKYGVTPGQLIDVKGLMGDTSDNIPGVPGVGEKTALNLIQKFNSLEELYENIDKVEKKGV 233 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 RE + E A +S++L + VP L + + L K LEF LI + Sbjct: 234 REKLENNKELAFMSKRLATIYRKVPGVEDLSSFARTEADKEALYGIFKRLEFKTLIEKFG 293 >gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102] gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102] Length = 981 Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 216/636 (33%), Positives = 351/636 (55%), Gaps = 52/636 (8%) Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDT----MDAFHSKPIAIAISTLDQKDDTSFKVET 426 I +T +Q VQ+L T + DT ++ F ++ + I + ++ D ++ Sbjct: 364 IQDTAALQGLVQRLMTCTDTGSPVALDTETTDLNPFKAELVGIGVCWGEELDALAY---- 419 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 I L + S DS + +++ L + +E K N K+D+L+L R+G+++ G Sbjct: 420 --IPLGHNGSADSQPVQLPLETVVTALAPWLGSEDHPKALQNAKFDRLILMRHGLALDGV 477 Query: 487 E-DIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSRK---SSIPIDKISDSQVQE 540 D +L Y+ D+ + H + +A++ + T L +K + +P++ S + Sbjct: 478 VIDTLLADYLRDAA-AKHGLELMAEREFGFQPTAYSDLVGKKQTFADVPLEAAS-----Q 531 Query: 541 HAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 + + +V +L LLLR +L + ++L + E++++P+ V+++ME TGI+ID L+++ Sbjct: 532 YCAMDVHVTRRLALLLRNQLAAMGAQVLTLLEQVEQPLEPVLAEMEATGIRIDVPYLQEL 591 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQD 656 S E+ L LE + +G FNL+SPKQLG++LF L +TKTG + T A Sbjct: 592 STEMGTTLERLETEAKEAAGVDFNLASPKQLGELLFDTLGLDRKKSRRTKTG-YSTDATV 650 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE++ D+P++ +LE R LSK+KSTY D+LP + T RVHT ++ A T TGRL+S Sbjct: 651 LEKLG-DDHPVVPLVLEHRVLSKLKSTYIDALPQLVEAETGRVHTDFNQAVTATGRLSSS 709 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQNIP++T+ ++IR+AF+ L+SADYSQIELRIL H++ L + + + D Sbjct: 710 NPNLQNIPVRTEYSRRIRKAFLPQAGWTLLSADYSQIELRILTHLSGEEVLQEAYRSGDD 769 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 +H + A + + ++VS RR KTINF +IYG+ R A + + +SEA D++ +Y Sbjct: 770 VHALTARLLL--DKDEVSADERRLGKTINFGVIYGMGAQRFARETGVSQSEAKDFLSKYK 827 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRR--IHYD-------------EIN---SPKSS 878 R+P + ++E + GYVETI GRR H+D EI+ + + Sbjct: 828 QRYPKVFAFLELQERLALSRGYVETILGRRRPFHFDRNGLGRLLGKEPLEIDLDVARRGG 887 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 + RAA NAPIQGS+ADI + AM+ + +L L ++LLQ+HDELV EV + + Sbjct: 888 MEAQQLRAAANAPIQGSSADIIKVAMVQLQAALTSQGLPARLLLQVHDELVLEVEPDALE 947 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 T ++V +ME A + L VPL V NW E Sbjct: 948 TTRDMVVRTMENA----VKLTVPLVAETGVGANWME 979 Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 105/315 (33%), Positives = 148/315 (46%), Gaps = 43/315 (13%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 L LVDG S +R+FYA +DG P + GF L ++ + E +A Sbjct: 10 LLLVDGHSLAFRSFYAFSKGGEGGLATNDGRPTSVTYGFLKSLLDTGKSLKPEGVA---- 65 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDII 121 + FD TFR++ +YKA+R PE+ L L + +P G+EADD++ Sbjct: 66 IAFDTAEPTFRHKADANYKAHRDVAPEVFFQDLDQLQEILRHKLDLPLCMAPGYEADDVL 125 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIKK 171 T A +G+ V I+S D+DL QLV LY I E V+ K Sbjct: 126 GTLANRAADDGWGVRILSGDRDLFQLVDDNRDIAVLYMGGGPYAKNSGPTLIREEGVLGK 185 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----------A 221 G+ P K+V L+ALTGDS DNIPG+ G+G KTA LL++ +L+ + A Sbjct: 186 LGVMPNKVVDLKALTGDSSDNIPGVRGVGPKTAISLLKDNNDLDAVYATLEELEAEGPKA 245 Query: 222 SR------IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE-HLILEDCNGPRLIS 274 SR +K K R + + A LSRKL + D+P +P E L L N L S Sbjct: 246 SRGAIKGALKGKLRNDK-----DNAYLSRKLAEILVDIP--LPQEPSLPLSTVNAEGLSS 298 Query: 275 FLKALEFTKLINRVA 289 L+ LE L+ +V Sbjct: 299 CLEDLELNSLLRQVG 313 >gi|284044321|ref|YP_003394661.1| DNA polymerase I [Conexibacter woesei DSM 14684] gi|283948542|gb|ADB51286.1| DNA polymerase I [Conexibacter woesei DSM 14684] Length = 884 Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 177/458 (38%), Positives = 280/458 (61%), Gaps = 11/458 (2%) Query: 520 ILKSRKSSIPIDKISD-----SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK 574 +L+ + S P+D++++ + V++ A ++ ++ L RP+L +LL +++ ++ Sbjct: 429 LLEPARRSYPLDELTEERGIGTDVEDAAAADAILVHALTAAQRPQLEERELLPLFDDVEL 488 Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P++ V+ ME G+++D +LL + + ++LE I++L+GE+F + SP+QLG ILF Sbjct: 489 PLVRVLRAMETAGLRLDTELLATIRTRVMDEAVALEREIWELTGEEFMIGSPQQLGQILF 548 Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 KL + KTG + T A+ L+ I G++P+I+ I WR+L+K+ STY D+LP I+ Sbjct: 549 EKLGLSRKRRGKTG-YSTDARVLQAIR-GEHPVIEKIERWRELTKLASTYLDALPLLISP 606 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754 R+HT ++ + TGRL+S PNLQNIPI+T LG++IR F++ P LISADYSQ+E Sbjct: 607 EDHRLHTTFNQVTAATGRLSSTNPNLQNIPIRTPLGREIRACFVAEPGNVLISADYSQVE 666 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LR+LAHIA L ++F D+H AA I G++ E++ R AK +N+ I+YG+S Sbjct: 667 LRVLAHIAGEEVLKEIFRRGEDVHTATAAAILGIDPEQLDAGSRSKAKMVNYGIVYGLSA 726 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 F LA +L+IPR EA ++I RY FP + +I T GYV T+ GRR E+ + Sbjct: 727 FGLADRLQIPREEAQEFIDRYLDGFPAVQAFIRTTIEQATDQGYVTTLMGRRRQIPELRA 786 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 +R + ER A+N IQG+AAD+ + AM++ ++L L T+++LQIHDEL+FE P Sbjct: 787 RNYQMRQLGERLAVNTVIQGTAADVIKLAMVNADRALHASGLRTRLILQIHDELLFEGPA 846 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EE A ++V M A + L PL V+ + NW Sbjct: 847 EEAEQARDLVVPQMVDA----LELDPPLVVDAGIGPNW 880 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 113/305 (37%), Positives = 170/305 (55%), Gaps = 12/305 (3%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLL-QNSRKESIASHF 61 K + LFL+DG+S YRAF+A P G P NAI GF +ML K+L + + +I Sbjct: 24 KPDELFLIDGNSLAYRAFFALPESIATSTGFPTNAIFGFASMLVKILTEYGPRATI---- 79 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V +D + R E+YP+YKA R P++ Q P + ++FG + + G+EADD+I Sbjct: 80 -VAWDR-GHSGRREVYPEYKAQRSSRPDLFKQQWPHLEPLVESFGYQNVSLDGYEADDVI 137 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT----VKEEKIDIEHVIKKWGIPPE 177 AT A+ G V +++ D+D QLV + T + D + VI ++GIPPE Sbjct: 138 ATLAERAKAAGIPVMVVTGDRDSFQLVDEGVQIMATSRGITETRTYDRQGVIDRYGIPPE 197 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 + L GD+ DNIPG+PGIG KTAA LL ++G+LE +L NA I+ +KRREN++E+A Sbjct: 198 LVPDFIGLKGDTSDNIPGVPGIGDKTAAQLLNDFGDLEGVLANAHTIRARKRRENLIEHA 257 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY-DCDA 296 E AR+S++L +R D+ + I + + + + RL + E + R+ D D Sbjct: 258 EDARVSKQLATMRRDLEVAIDVAAVHGAEPDRSRLRETFREFELRDPLRRLEEALGDGDE 317 Query: 297 ANIEP 301 A P Sbjct: 318 AAPRP 322 >gi|322391169|ref|ZP_08064641.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780] gi|321145922|gb|EFX41311.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780] Length = 889 Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 210/529 (39%), Positives = 312/529 (58%), Gaps = 19/529 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509 LK F E LK+ ++ K K++L+R+G+ ++ D L Y+L S +++I++IA Sbjct: 371 LKDFLEKTP-LKV-YDFKKAKVLLNRFGLDLQAPAFDSRLAKYLL-STVENNEISTIANL 427 Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 Q +L K K +IP EH V+++ +L KL L Sbjct: 428 YGQTYLVDDETFYGKGVKKAIP----ERETFLEHLARKVAVLVETEPVLLEKLCENGQLD 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + +++P+ V+++MEI GI++ ++ L ++ AE + L + IY+L+GE+FN++SPK Sbjct: 484 LLYEMEQPLAFVLAKMEIAGIKVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG++LF KL P KT +TA D+ + PI+K IL++RQ++KI+STY Sbjct: 544 QLGELLFEKLGLPIEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 603 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746 L + I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+ Sbjct: 604 LQDWI-LADGKIHTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 662 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S+DYSQIELR+LAHI+K L + F+ DIH A +FG+ E V+P RR+AK +N Sbjct: 663 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 722 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F ++YGIS F L+ L I R +A YI YF RFPGI Y+++ R GYVET+F R Sbjct: 723 FGVVYGISDFGLSNNLGISRKDAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 782 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R +INS +IR ER AIN+PIQGSAADI + AMI + K+L + TKMLLQ+H Sbjct: 783 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 842 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DE+V EVP+ E+ +++ +ME+A I L VPL + W E Sbjct: 843 DEIVLEVPKSELAAIKKLVKQTMEEA----IQLSVPLIADENEGVTWYE 887 Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 116/285 (40%), Positives = 154/285 (54%), Gaps = 11/285 (3%) Query: 7 LFLVDGSSFIYRAFYA--TPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DGSS +RAF+A L K+D GL NAI GF ML LL+ + SH V Sbjct: 18 LLLIDGSSVAFRAFFALYQQLDRFKNDNGLHTNAIYGFHLMLNHLLERIQ----PSHILV 73 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDII T Sbjct: 74 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADDIIGT 133 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 +AEKE F VTI+S DKDL+QL T + + K E +++++K GI P + Sbjct: 134 LGRLAEKESFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGITPTQF 193 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD DNIPG+ IG KT LL E+G+LE I N +K K +EN++ E Sbjct: 194 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDSMKASKMKENLVNDKEQ 253 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 A LS+ L + T PI I L+ L+ + L F + F +L Sbjct: 254 AFLSKTLATIDTKAPIEIGLDDLVYSGPDVENLGKFYDEMGFKQL 298 >gi|294791734|ref|ZP_06756882.1| DNA polymerase I [Veillonella sp. 6_1_27] gi|294456964|gb|EFG25326.1| DNA polymerase I [Veillonella sp. 6_1_27] Length = 877 Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 190/487 (39%), Positives = 292/487 (59%), Gaps = 25/487 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L++Y+LD R+++ + +++ S+P I++ V + Sbjct: 410 DMSLIAYLLDPTRTNYGYLYLTERF--------------SVP--SIANGSVDVECVSMVK 453 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 +L + + E+L +YE ++ P+I + ME GI ID + L + +A + L Sbjct: 454 ALLAMNEVACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTEKLAETTARFKEELT 513 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 ++E IY+L+GE FN++SPKQLG ILF K+K P KTKTG + T A+ L+ + ++PI Sbjct: 514 QVQEEIYELAGETFNINSPKQLGVILFEKMKLPIIKKTKTG-YSTDAEVLDMLRH-ESPI 571 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 ++ IL +R ++K+ STY + L IN +T R+HT ++ T TGRL+S +PNLQNIP++T Sbjct: 572 VEKILAYRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 631 Query: 728 DLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 + G++IR A P T L+SADYSQIELRILAH++ L + F DIHR AAE+ Sbjct: 632 EKGREIR-ALFYPGTGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEV 690 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 G + ++V+ + R HAK INF IIYGIS F L+ L I R EA +YI YF R+P + EY Sbjct: 691 LGKSQDEVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEY 750 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 +++ + G V T+FGR+ +INS + R+ ER A+N PIQG+AADI + AM Sbjct: 751 MDRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMN 810 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 V + LE+ +++LLQ+HDELV EV E+ +++ +M+ + L+VPL V+ Sbjct: 811 QVEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEELLRSTMQSV----VELQVPLIVD 866 Query: 966 IKVSNNW 972 + + NW Sbjct: 867 VHHAENW 873 Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 124/363 (34%), Positives = 200/363 (55%), Gaps = 29/363 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DGSS ++RAF+A P L + G P NA+ GF ML KL + E + AV FD Sbjct: 8 LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYE----EINPDYIAVAFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR E+Y +YK NRP PE L PQ L++ +A GI IE +GFE DDI+ + + Sbjct: 63 KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSLSK 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AV II+ D+D +QLV+ + ++ T K ++ ++++ + +G P+K++ + Sbjct: 123 KFGAPDMAVQIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVIEM 182 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +AL GDS DNIPG+PG+G KTA L+ EYGNLE++ + I KK +E ++E E A L Sbjct: 183 KALMGDSSDNIPGVPGVGEKTALKLITEYGNLESVYDHIEDISGKKLKERLVENKELAFL 242 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA------ 296 SR+L ++TD+ ++ +E + ++ + + + L FTKL R+A C+ Sbjct: 243 SRELATIKTDMELSYEVEDFV-QNFHASEVQPLFETLGFTKLTPRIAQVMGCEEVALGDP 301 Query: 297 ----ANIEPVVLD---------INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343 A E + LD + ++K +A+ +D T +T + LS+ + + + Sbjct: 302 GSLFAQQEEISLDDLADAKSLTADFYKDKTVAVHVILDGKTPFRTVTNAYLSNGDTIVKT 361 Query: 344 EQT 346 + T Sbjct: 362 DDT 364 >gi|290890151|ref|ZP_06553233.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429] gi|290480195|gb|EFD88837.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429] Length = 911 Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 193/508 (37%), Positives = 307/508 (60%), Gaps = 15/508 (2%) Query: 474 LVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY--TRKEILKSR-KSSIP 529 ++L+R G+ + + D +L+SY+LD+ + + +A++A ++ + + E+ S K IP Sbjct: 412 VLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQLATLANRFNVFLESDAEVYGSGVKFKIP 471 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 + + + H ++ I +L KL + +Y +++ P+ V++ MEI GI+ Sbjct: 472 EN---NETLFSHMANKASTISKLHDPSMKKLSDHQQAELYRQIELPLSKVLASMEINGIK 528 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 +DQ LK++ E + + LE+ IY+ +G++FN++SPKQL D+LF +K P KTKTG Sbjct: 529 LDQAELKKLGQEFDQRIFELEKQIYEEAGQEFNINSPKQLADLLFAHMKIPPIKKTKTG- 587 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T A LE++ P + IL++RQL+K+ STY L +N ++HT Y T Sbjct: 588 YSTAANVLEEL-AEKYPFVGLILQYRQLAKLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQ 646 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S++PN+QNIP + + G++IR+AF+ S ++ +DYSQIELR+LAH+ L Sbjct: 647 TGRLSSVDPNMQNIPDRDEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLK 706 Query: 769 QVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + FE+ DIH A IFG++ +K++ RR AK +NF I+YGIS F LA +L R E Sbjct: 707 KAFESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDFGLAQRLGTSRIE 766 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 + I+ YFH FP + +I+ + GYVETI RR + +I+S ++R+ ER A Sbjct: 767 GKEIIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFAERTA 826 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 N PIQGSAADI + AMI + ++L+D+ L KMLLQ+HDEL+FE P++EI +++ Sbjct: 827 TNTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQEIDILEELVPKV 886 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQEE 975 M+ A + L VPL+V NW +E Sbjct: 887 MDSA----VKLNVPLRVEAHHGVNWYDE 910 Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 105/286 (36%), Positives = 161/286 (56%), Gaps = 16/286 (5%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S +RAFYA L R H GL NA+ F N +++ E + +A+ Sbjct: 24 LLLIDGNSLAFRAFYAMYNQLDRMVAHTGLHTNALVAFNNFFDQVV-----EKMNPDYAL 78 Query: 64 IF---DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 + A TFR +I+ DYK +R P L Q P +R GI + E+ GFEADDI Sbjct: 79 VAWDAGKGATTFRAKIFDDYKGDRQTTPPELSEQFPYLRKMVDLHGIHSYELPGFEADDI 138 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG-IP 175 I TY+ +AEK G TII+ D+DL QLV+ + T K ++ + + +KWG I Sbjct: 139 IGTYSKLAEKAGLKTTIITGDRDLTQLVTDNVSVNVTKKGVTELDRYTPKFLAEKWGGIT 198 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P +++ +++LTGD+ D+ PG+ +G KTA LL E+G+L+ I + +K K +EN+L Sbjct: 199 PSQVIEMKSLTGDTSDHYPGVTKVGLKTAIKLLNEFGSLDGIYQHIDSMKTSKLKENLLN 258 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 E+A + +L +RTD P+ + ++ LI + N LI F + L+F Sbjct: 259 DKESAYRAHELATIRTDAPVELEMKELINQPINFQELIPFYEELDF 304 >gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098] gi|212674099|gb|EEB34582.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098] Length = 919 Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 178/485 (36%), Positives = 290/485 (59%), Gaps = 17/485 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ + +Y+L+ + + ++ +W + R E L+SR E A + Sbjct: 448 DLGVAAYLLNPEENDYGWPRLSARWGAVLRHE-LESRG--------------ETASGPAR 492 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 + L + L ++ + LL ++ RL+ P++ V++ ME +G+ ID + ++ L Sbjct: 493 LGLAMAQLFEQRMEKDGLLELFRRLEMPLLPVLAGMEQSGVAIDAAAFRAFLDDVQGQLD 552 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 L ++Y+L+G +FN+ S +QLGD+LF L P+ KTK GQ T+ Q LE++ G +P+ Sbjct: 553 QLTAHVYELAGTQFNIRSAQQLGDVLFNGLGLPAPRKTKGGQASTSQQTLEKL-AGQHPV 611 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 + +IL++R+L K++STY D LP ++ + R+HT ++ +T TGRL+S PNLQNIP++ Sbjct: 612 VDSILQYRKLEKMRSTYLDPLPRLVDPQG-RIHTTFNQKATATGRLSSSNPNLQNIPVRG 670 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 LG+++R FI+ P + L+SADYSQ+ELR+LAH+++ L + F N DIH AA ++ Sbjct: 671 PLGKRMRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALLEAFRNGEDIHARTAALVYD 730 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 + ++VSP RR+AKTINF +IYG+ +LA +L+I ++A D+I RYF R G+ E+ E Sbjct: 731 LPPDQVSPDQRRNAKTINFGLIYGMGAQKLAQELKISTTQAKDFIARYFERLQGLKEFYE 790 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 + R++G+V T+ GRR +INS + R AIN IQGSAADI + AM++V Sbjct: 791 GVEASARKHGFVTTLGGRRRLLPDINSASGQAAALARRQAINTVIQGSAADIIKLAMLAV 850 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 + +L ++LLQ+HDEL+ EVP + A ++ M+ C L VPL V+ Sbjct: 851 ARDERLRELDARLLLQVHDELLLEVPADAAEEAGALVARLMQDVCPAGKELSVPLLVDWG 910 Query: 968 VSNNW 972 ++W Sbjct: 911 TGHDW 915 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 134/247 (54%), Gaps = 14/247 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 +FL+DGS+FIYR F+A + R DG P N++ +L ++L+ R +FA + D Sbjct: 14 VFLMDGSAFIYRGFFANRNMQRS-DGFPTNSLVVVSRVLLRILREERPR----YFAFVQD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR+EI+P YKANR PE L+ QL ++ +A G+ QG EADD IA+ Sbjct: 69 GKGPNFRHEIFPLYKANRDATPEDLVRQLDPIQRMVRALGLRLEVSQGCEADDCIASLAA 128 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEKIDIE-HVIKKWGIPPEKMVCLQA 184 E V I+S DKDL Q + P ++D KEEK+ E + G+ P + +QA Sbjct: 129 RFAGE-HPVIIVSGDKDLKQCLGPNVYMWDPASKEEKLVSEADFTAESGVTPGQWPDVQA 187 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI------LINASRIKQKKRRENILEYAE 238 L GD+ DNIPG+PGIG KTA + +LE+I L + K ++ EN+ + + Sbjct: 188 LIGDTSDNIPGVPGIGPKTARQIFSICPSLEDIRDHFVLLPPKLQAKLQEHLENMFIWRQ 247 Query: 239 TARLSRK 245 LSR+ Sbjct: 248 LTTLSRE 254 >gi|149917649|ref|ZP_01906145.1| DNA polymerase I [Plesiocystis pacifica SIR-1] gi|149821431|gb|EDM80831.1| DNA polymerase I [Plesiocystis pacifica SIR-1] Length = 898 Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 193/544 (35%), Positives = 308/544 (56%), Gaps = 16/544 (2%) Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGR 500 + L + L+ L+ + E+ K+GH+ K + L R G+++ G D M+ S++++ + Sbjct: 358 EGGLGEAGLAKLRPWLEDPKRYKLGHDCKASWVALRRKGVALAGIVGDTMIESFLVEPNK 417 Query: 501 S-SHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556 H + + +++L T +K IL S K ++ + + ++ + Sbjct: 418 LIPHRLDQLTKEYLQRTIPPQKRILGSGKRLKRFSQLDAEALAPWCCTQVEAVAAAFVEI 477 Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 R +L E E++ P+ V+ QME+ G+ ID + L ++S E + L LE+ I+++ Sbjct: 478 RERLDAEGHRDTLEQVSLPLSWVLGQMELDGVAIDSEDLGKMSEEFGERLAKLEKTIFEI 537 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG----DNPIIKNIL 672 +G +FN++S KQLG +LF +L+ P +TKTG + T A+ LE++ + I K +L Sbjct: 538 AGREFNIASSKQLGAVLFDELELPVIKRTKTG-YSTNAEVLERLAGKTKHPKHTIAKYLL 596 Query: 673 EWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732 E R+L+K+ +TY D L +N + R+H + + ++GRL + EP+LQ PIKT G++ Sbjct: 597 EHRKLAKLINTYTDVLQAAVNPDSGRIHATFQQTAGVSGRLITTEPDLQRTPIKTPEGKR 656 Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF--GVNI 790 +R+AF++ P KLISAD+SQIELR+LAH + L + F LD+H AA++F G Sbjct: 657 VRQAFVTRPGYKLISADWSQIELRLLAHFSSDAHLVEAFAKGLDVHARTAAQLFEVGGGP 716 Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850 EKVS + R K +NF+ IYG L L++PR +A YI YF + G+ ++++ T Sbjct: 717 EKVSREQRGVGKLVNFATIYGQGATALGQILKVPRKQAQAYIDGYFAYYSGVRDWLDGTM 776 Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910 +G+VET+ GRR + E++S R ER A N PIQGSAADI + AM+ + + Sbjct: 777 AQANVDGFVETLLGRRRYIPELSSNNWQDRQAGERIAANTPIQGSAADICKLAMLGIDRQ 836 Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970 L KL T+MLLQIHDELVFE P E+ I+ ME + LRVPL V++ V + Sbjct: 837 LRAQKLTTRMLLQIHDELVFEAPVAEVEAVVAIVRGQMESV----VELRVPLVVDVGVGD 892 Query: 971 NWQE 974 W E Sbjct: 893 TWAE 896 Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 127/286 (44%), Positives = 164/286 (57%), Gaps = 5/286 (1%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L L+D SS IYRA+YA P DGL NAI GF M K+L + E Sbjct: 1 MPTPERLILIDASSLIYRAYYAIPANFSTADGLHTNAIYGFATMFRKILSGRQPE----R 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV+FD P TFR E YP+YKA RP++ L QLP V +A P + + G+EADDI Sbjct: 57 GAVVFDAPGKTFREEQYPEYKAQRPRMDPELREQLPWVDKLVEAHRFPHLRVPGYEADDI 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T T A G V IIS DKD QL+ PT + DT+++ D E V KKWG+PP + Sbjct: 117 IGTLTRQAVDAGMEVYIISGDKDFAQLIGPTVRMIDTLRDVTFDAELVRKKWGVPPSLFI 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 AL GD +DNIPG+PGIG KTA LL YG+LE +L + S +K K+ +E + + AE A Sbjct: 177 DYLALVGDKVDNIPGVPGIGPKTAKKLLDAYGDLEGVLTHTSELKGKQ-KERLEDNAEQA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 R+S+KL + T V + + LE L L L + K LEF L++ Sbjct: 236 RMSQKLATIDTQVELELGLEDLKLVPVAAAELNALYKRLEFYSLLS 281 >gi|331267297|ref|YP_004326927.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5] gi|326683969|emb|CBZ01587.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5] Length = 877 Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 211/529 (39%), Positives = 312/529 (58%), Gaps = 19/529 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIA-- 509 LK+F E LK+ ++ K K++L+R G++++ D L Y+L S +++I++IA Sbjct: 359 LKEFLEKTP-LKV-YDFKKAKVLLNRLGLNLQAPAYDSRLAKYLL-STVENNEISTIANL 415 Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 Q +L K K +IP + EH V+++ +L KL L Sbjct: 416 YGQTYLVDDETFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLD 471 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + +++P+ V+++MEI GI++ ++ L ++ AE + L + IY+L+GE+FN++SPK Sbjct: 472 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELAGEEFNINSPK 531 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF KL P KT +TA D+ + PI+K IL++RQ++KI+STY Sbjct: 532 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 591 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746 L + I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+ Sbjct: 592 LQDWI-LDDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 650 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S+DYSQIELR+LAHI+K L + F+ DIH A +FG+ E V+P RR+AK +N Sbjct: 651 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 710 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F ++YGIS F L+ L I R EA YI YF RFPGI Y+++ R GYVET+F R Sbjct: 711 FGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 770 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R +INS +IR ER AIN+PIQGSAADI + AMI + K+L + TKMLLQ+H Sbjct: 771 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 830 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DE+V EVP+ E+ ++ +ME+A I L VPL + W E Sbjct: 831 DEIVLEVPKSELAAVKDLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 114/288 (39%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DGSS +RAF+A L R +GL NAI GF ML +L+ SH V Sbjct: 6 LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PSHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDII T Sbjct: 62 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELPQYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 +AEK+ F VTI+S DKDL+QL T + + K E +++++K G+ P + Sbjct: 122 LGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGLTPAQF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ E Sbjct: 182 IDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLINDKEQ 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKL 284 A LS+ L + T PI I L+ L+ NGP L F + F +L Sbjct: 242 AFLSKTLATIETQAPIEIGLDDLV---YNGPDVENLGKFYDEMGFKQL 286 >gi|225548253|ref|ZP_03769538.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM 10507] gi|225040593|gb|EEG50839.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM 10507] Length = 878 Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 184/489 (37%), Positives = 298/489 (60%), Gaps = 15/489 (3%) Query: 491 LMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISD--SQVQEHAIEN 545 + +Y+L+ ++++D I +++L R+E++ + D +++ +++ Sbjct: 398 VAAYLLNPLKTAYDYEDIGKEYLGQIFPGRQEVVGKKGDK---DALAEKPEEMKRLGCFM 454 Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 + V L + L L + +++ ++ P++ ++ ME GIQ++ + L+ ++ Sbjct: 455 AYVALAVKAPLEEALREAGMERIFQEIEMPLVFTLNSMEKEGIQVEGEALRVYGEQLQVR 514 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 + LE+ I +GE FN++SPKQLG ILF K+K P G KTKTG + T A L+++ + Sbjct: 515 IGELEKQICGQAGEDFNINSPKQLGAILFEKMKLPGGKKTKTG-YSTAADVLDKL-APKH 572 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 PI+++ILE+RQL+K+KSTYAD L +I + R+H+ + T TGR++S EPNLQNIPI Sbjct: 573 PIVRDILEYRQLTKLKSTYADGLAGYIGE-DGRIHSTFHQTITATGRISSTEPNLQNIPI 631 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 + +LG+ IR+ F+ + ADYSQIELR+LAH++ L Q + + DIHR+ A+++ Sbjct: 632 RMELGRLIRKVFVPREGCIFLDADYSQIELRVLAHMSGDEKLIQAYREAQDIHRLTASQV 691 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 F E+V+ RR+AK +NF I+YGIS F L+ L I R EAADYI+RYF +P I + Sbjct: 692 FHTPFEEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAADYIERYFSTYPKIKGF 751 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 ++ +++GYV T+FGRR E+ S R+ ER A+N+PIQG+AADI + AM Sbjct: 752 LDGLVKKGKEDGYVTTMFGRRRPIPELKSSNFMQRSFGERIAMNSPIQGTAADIIKIAMN 811 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 V+ L L +K++LQ+HDEL+ E EEE+ S+I++ M +A +L V L+V+ Sbjct: 812 RVYSRLRQEGLRSKLILQVHDELLIETWEEELEQVSEILLEEMRQAA----SLDVALEVD 867 Query: 966 IKVSNNWQE 974 + NW E Sbjct: 868 MHTGKNWYE 876 Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 168/291 (57%), Gaps = 13/291 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ +G A+ GF N+L+++L+ + + + AV FD Sbjct: 6 ILLIDGHSILNRAFYGLPDLTNS-EGKHTGAVYGFLNILFRILEEEKPQ----YLAVAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+++Y YK R +PE L Q+PL++ +A IP + ++G+EADD++ T Sbjct: 61 LHAPTFRHQMYEAYKGTRKAMPEELREQVPLMKEVLEAMEIPIVSLEGYEADDLLGTLGR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +E+ G VTI+S D+DL+QL + P T TV E + VI+K+ + PE++ Sbjct: 121 RSEQRGMEVTILSGDRDLLQLATDHVLIRIPKTTKGQTVIE-NYHTQEVIEKYQLRPEQI 179 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GDS DNIPGIPG+G KTA +L Y N+EN + IK K +E++ ++ + Sbjct: 180 IDLKALMGDSSDNIPGIPGVGEKTATKILLAYENVENAYAHVEEIKPNKAKESLRDHYDL 239 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 A++S+ L + TD P++ + L + R + LEF L+ R A Sbjct: 240 AQMSKALATIHTDSPVSFDYDQAKLGELYTQRAYEMFQRLEFKNLLQRFAC 290 >gi|70726235|ref|YP_253149.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435] gi|68446959|dbj|BAE04543.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435] Length = 876 Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 204/534 (38%), Positives = 311/534 (58%), Gaps = 33/534 (6%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L K+ ENE KI ++ K +V HR I ++ D+ML SY++D R+ D+ S+ Sbjct: 358 LIKWLENETTEKIVYDAKKTYVVAHRLDIDIKNIVFDVMLASYIIDPSRTIDDVNSVVSN 417 Query: 512 W-LSYTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + ++ + +I K +K +P D I + + I + + +++ E L Sbjct: 418 YNQNFVQDDISIYGKGKKRHVPEDTILNKHIAS--------ITEAIYACKREMVAE--LE 467 Query: 568 VYERLDKPMID------VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 ++++D + ++S+ME TGI D + L+Q+ +EI L L NI++ +GE+F Sbjct: 468 SHQQIDLLLNLELPLARILSEMEETGIYTDINDLRQMQSEIQGKLDLLISNIHEAAGEEF 527 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 N++SPKQLG +LF L+ P KTKTG + T LEQ+ G +PII ILE+RQLSK++ Sbjct: 528 NINSPKQLGVVLFETLELPVIKKTKTG-YSTAVDVLEQLQ-GQHPIIDYILEYRQLSKLQ 585 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 STY + L I+K R+HT ++ TGRL+S++PNLQNIP++ + G+KIR+AF P Sbjct: 586 STYVEGLQKVISK-DNRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAF--KP 642 Query: 742 TKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 T ++SADYSQIELR+LAHI + + + F N D+H A ++F V +V+ MR Sbjct: 643 TSNDSVILSADYSQIELRVLAHITQDESMKEAFINEKDVHTATAMKVFDVEANEVNALMR 702 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 R AK +NF I+YGIS + L+ L I R +A +I Y FPG+ +Y+ + +GY Sbjct: 703 RQAKAVNFGIVYGISDYGLSQSLNITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKADGY 762 Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 VET+ RR + +INS ++R ER A+N PIQGSAADI + AM+ + ++ Sbjct: 763 VETLLHRRRYIPDINSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVEFDRQIKQTSYHA 822 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++LLQ+HDEL+FEVP E+ S + ME A + L VPLKV+ + W Sbjct: 823 QLLLQVHDELIFEVPANEVEDFSLFVEEIMEHA----LQLDVPLKVDSNYGSTW 872 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 108/304 (35%), Positives = 167/304 (54%), Gaps = 21/304 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K++ +E SHF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIM----REEQPSHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R P L Q P +R + I E++ +EADDII T Sbjct: 57 FDAGKTTFRHSKYSEYKGGRQSTPPELSEQFPYIRQLLDTYHIKHYELENYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKW-GIPPEK 178 + A +GF I++ D+DL QL + +Y T K+ D++H + +K+ G+ P + Sbjct: 117 SKEANDQGFETIIVTGDRDLTQLATDNVTIYYT-KKGVTDVDHYTPEFIAEKYDGLNPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL+++ +E + N + KK +E + E Sbjct: 176 IIDMKGLMGDASDNIPGVAGVGEKTAIKLLKQFNTVEGVYDNIDSVSGKKLKEKLENSRE 235 Query: 239 TARLSRKLVMLRTDVPITIPLEHLIL--EDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A +S+ L + + PI + L+ +L +D N + I K LEF +L++ D D+ Sbjct: 236 DAFMSKDLATINKNSPIEVTLQDTVLKNQDDNKDK-IELFKKLEFKQLLS------DIDS 288 Query: 297 ANIE 300 N E Sbjct: 289 NNTE 292 >gi|306828647|ref|ZP_07461840.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249] gi|304429153|gb|EFM32240.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249] Length = 889 Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 211/529 (39%), Positives = 313/529 (59%), Gaps = 19/529 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509 LK+F E LK+ ++ K K++L+R G++++ D L Y+L S +++I++IA Sbjct: 371 LKEFLEKTS-LKV-YDFKKAKVLLNRLGLNLQAPAFDSRLAKYLL-STVENNEISTIANL 427 Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 Q +L+ K K +IP + EH V+++ +L KL L Sbjct: 428 YGQTYLADDETFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLLEKLGEHGQLD 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + +++P+ V+++MEI GI++ ++ L ++ AE + L + IY+L+GE+FN++SPK Sbjct: 484 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF KL P KT +TA D+ + PI+K IL++RQ++KI+STY Sbjct: 544 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVG 603 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746 L + I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+ Sbjct: 604 LQDWI-LDDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 662 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S+DYSQIELR+LAHI+K L + F+ DIH A +FG+ E V+P RR+AK +N Sbjct: 663 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 722 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F ++YGIS F L+ L I R EA YI YF RFPGI Y+++ R GYVET+F R Sbjct: 723 FGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 782 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R +INS +IR ER AIN+PIQGSAADI + AMI + K+L + TKMLLQ+H Sbjct: 783 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 842 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DE+V EVP+ E+ ++ +ME+A I L VPL + W E Sbjct: 843 DEIVLEVPKSELAAVKVLVKQTMEEA----IQLSVPLIADENEGATWYE 887 Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 115/288 (39%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DGSS +RAF+A L R +GL NAI GF ML +L+ SH V Sbjct: 18 LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PSHVLV 73 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDII T Sbjct: 74 AFDAGKTTFRTEMYSDYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADDIIGT 133 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 +AEK+ F VTI+S DKDL+QL T + + K E +++++K G+ P + Sbjct: 134 LGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGLTPAQF 193 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD DNIPG+ IG KT LL E+G+LE I N +K K +EN++ E Sbjct: 194 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLIIDKEQ 253 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKL 284 A LS+ L + T PI I L+ L+ NGP L F + F +L Sbjct: 254 AFLSKLLATIETQAPIEIGLDDLV---YNGPDVENLGKFYDEMGFKQL 298 >gi|270291866|ref|ZP_06198081.1| DNA polymerase I [Streptococcus sp. M143] gi|270279394|gb|EFA25236.1| DNA polymerase I [Streptococcus sp. M143] Length = 877 Score = 341 bits (874), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 211/529 (39%), Positives = 313/529 (59%), Gaps = 19/529 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509 LK+F E LK+ ++ K K++L+R+G++++ D L Y+L S +++I++IA Sbjct: 359 LKEFLEKTP-LKV-YDFKKAKVLLNRFGLNLQAPAFDSRLAKYLL-STVENNEISTIANL 415 Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 Q +L K K +IP + EH V+++ +L KL L Sbjct: 416 YGQTYLVDDETFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLD 471 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + +++P+ V+++MEI GI++ ++ L ++ AE + L + IY+L+GE+FN++SPK Sbjct: 472 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELAGEEFNINSPK 531 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF KL P KT +TA D+ + PI+K IL++RQ++KI+STY Sbjct: 532 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 591 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746 L + I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+ Sbjct: 592 LQDWI-LADGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 650 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S+DYSQIELR+LAHI+K L + F+ DIH A +FG+ E V+P RR+AK +N Sbjct: 651 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 710 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F ++YGIS F L+ L I R EA YI YF RFPGI Y+++ R GYVET+F R Sbjct: 711 FGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 770 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R +INS +IR ER AIN+PIQGSAADI + AMI + K+L + TKMLLQ+H Sbjct: 771 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 830 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DE+V EVP+ E+ ++ +ME+A I L VPL + W E Sbjct: 831 DEIVLEVPKAELAAVKVLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 117/288 (40%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DGSS +RAF+A L R +GL NAI GF ML +L+ SH V Sbjct: 6 LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PSHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDII T Sbjct: 62 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELPQYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 +AEK+ F VTI+S DKDL+QL T + + K E +++++K GI P + Sbjct: 122 LGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGITPAQF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD DNIPG+ IG KT LL E+G+LE I N +K K +EN++ E Sbjct: 182 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLINDKEQ 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKL 284 A LS+ L + T PI I LE L+ NGP L F + F +L Sbjct: 242 AFLSKTLATIETQAPIEIGLEDLV---YNGPDVENLGKFYDEMGFKQL 286 >gi|293364474|ref|ZP_06611200.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037] gi|291317320|gb|EFE57747.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037] Length = 889 Score = 340 bits (873), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 211/529 (39%), Positives = 311/529 (58%), Gaps = 19/529 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509 K+F E LK+ ++ K K++L+R G++++ D L Y+L S +++I++IA Sbjct: 371 FKEFLEKTS-LKV-YDFKKAKVLLNRLGLNLQAPAFDSRLAKYLL-STVENNEISTIASL 427 Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 Q +L K K +IP + EH V+++ +L KL L Sbjct: 428 YSQTYLVDDETFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLD 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + +++P+ V+++MEI GI++ ++ L ++ AE + L + IY+L+GE+FN++SPK Sbjct: 484 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELAGEEFNINSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF KL P KT +TA D+ + PI+K IL++RQ++KI+STY Sbjct: 544 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 603 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746 L + I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+ Sbjct: 604 LQDWI-LDDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 662 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S+DYSQIELR+LAHI+K L + F+ DIH A +FG+ E V+P RR+AK +N Sbjct: 663 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 722 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F ++YGIS F LA L I R +A YI YF RFPGI Y+E+ R GYVET+F R Sbjct: 723 FGVVYGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFKR 782 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R +INS +IR ER AIN+PIQGSAADI + AMI + K+L + TKMLLQ+H Sbjct: 783 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 842 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DE+V EVP+ E+ ++ +ME+A I L VPL + W E Sbjct: 843 DEIVLEVPKSELAAVKDLVKQTMEEA----IQLSVPLIADENEGATWYE 887 Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 115/288 (39%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DGSS +RAF+A L R +GL NAI GF ML +L+ SH V Sbjct: 18 LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PSHVLV 73 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDII T Sbjct: 74 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADDIIGT 133 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 +AEK+ F VTI+S DKDL+QL T + + K E +++++K G+ P + Sbjct: 134 LGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGLTPAQF 193 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD DNIPG+ IG KT LL E+G+LE I N +K K +EN++ E Sbjct: 194 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLINDKEQ 253 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKL 284 A LS+ L + T PI I L+ L+ NGP L F + F +L Sbjct: 254 AFLSKTLATIETQAPIEIGLDDLV---YNGPDVENLGKFYDEMGFKQL 298 >gi|307702767|ref|ZP_07639718.1| putative DNA polymerase [Streptococcus oralis ATCC 35037] gi|307623680|gb|EFO02666.1| putative DNA polymerase [Streptococcus oralis ATCC 35037] Length = 524 Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 211/529 (39%), Positives = 311/529 (58%), Gaps = 19/529 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509 K+F E LK+ ++ K K++L+R G++++ D L Y+L S +++I++IA Sbjct: 6 FKEFLEKTS-LKV-YDFKKAKVLLNRLGLNLQAPAFDSRLAKYLL-STVENNEISTIASL 62 Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 Q +L K K +IP + EH V+++ +L KL L Sbjct: 63 YSQTYLVDDETFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLD 118 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + +++P+ V+++MEI GI++ ++ L ++ AE + L + IY+L+GE+FN++SPK Sbjct: 119 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELAGEEFNINSPK 178 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF KL P KT +TA D+ + PI+K IL++RQ++KI+STY Sbjct: 179 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 238 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746 L + I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+ Sbjct: 239 LQDWILD-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 297 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S+DYSQIELR+LAHI+K L + F+ DIH A +FG+ E V+P RR+AK +N Sbjct: 298 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 357 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F ++YGIS F LA L I R +A YI YF RFPGI Y+E+ R GYVET+F R Sbjct: 358 FGVVYGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFKR 417 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R +INS +IR ER AIN+PIQGSAADI + AMI + K+L + TKMLLQ+H Sbjct: 418 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 477 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DE+V EVP+ E+ ++ +ME+A I L VPL + W E Sbjct: 478 DEIVLEVPKSELAAVKDLVKQTMEEA----IQLSVPLIADENEGATWYE 522 >gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28] gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28] Length = 890 Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 199/526 (37%), Positives = 313/526 (59%), Gaps = 16/526 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K + N K + K + L GI ++G + D+++ +Y+LD + D ++A+ Sbjct: 371 FKAWLANGEMRKHTFDAKRAIVALKWKGIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 430 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P ++ V EH +V+ + +L + Sbjct: 431 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 486 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V++ ME+ G+++D + L+ + E++ L +E+ IY L+G +FN++SPK Sbjct: 487 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 546 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II NIL +RQL K+ STY + Sbjct: 547 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEG 604 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI- 746 L +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AF+ +I Sbjct: 605 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIIY 664 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 +ADYSQIELR+LAHIA L + F++ +DIH A ++FGV ++V+ MRR AK +NF Sbjct: 665 AADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNF 724 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YGIS + L+ L I R AA++I++Y FPG+ EY++ +Q GYV T+ RR Sbjct: 725 GIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRR 784 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + EI S ++R+ ER A+N PIQGSAADI + AMI + LE+ L ++LLQ+HD Sbjct: 785 RYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKIAMIIMADRLEEEGLQARLLLQVHD 844 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EL+FE P+EEI +++ ME A I L VPLKV+ W Sbjct: 845 ELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 886 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 15 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 69 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 70 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 129 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++GF V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 130 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 189 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++ +E + N ++ KK +E + E Sbjct: 190 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENIDQVSGKKLKEKLEANKEQ 249 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 250 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 309 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 310 LDDITFDI 317 >gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18] gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18] Length = 890 Score = 340 bits (872), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 199/528 (37%), Positives = 316/528 (59%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K + N K + K + L GI ++G + D+++ +Y+LD + D ++A+ Sbjct: 371 FKAWLANGEMRKHTFDAKRAIVALKWKGIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 430 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P ++ V EH +V+ + +L + Sbjct: 431 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 486 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V++ ME+ G+++D + L+ + E++ L +E+ IY L+G +FN++SPK Sbjct: 487 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 546 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II NIL +RQL K+ STY + Sbjct: 547 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEG 604 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+++ Sbjct: 605 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 662 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIA L + F++ +DIH A ++FGV ++V+ MRR AK + Sbjct: 663 MYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 722 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R AA++I++Y FPG+ EY++ +Q GYV T+ Sbjct: 723 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLN 782 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQGSAADI + AMI + LE+ L ++LLQ+ Sbjct: 783 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKIAMIIMADRLEEEGLQARLLLQV 842 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE P+EEI +++ ME A I L VPLKV+ W Sbjct: 843 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 886 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 15 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 69 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 70 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 129 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++GF V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 130 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYNLSPKQI 189 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++ +E + N ++ KK +E + E Sbjct: 190 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENIDQVSGKKLKEKLEANKEQ 249 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 250 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 309 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 310 LDDITFDI 317 >gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] Length = 882 Score = 340 bits (872), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 171/420 (40%), Positives = 266/420 (63%), Gaps = 6/420 (1%) Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614 +L KL E++ ++ ++ P++ + ME G++++ + LK ++ ++ LE+ IY Sbjct: 467 VLEEKLKKEEMWKLFTEIEMPLVFTLFHMEQNGVRVEAEELKSYGEQLGGKIVQLEKEIY 526 Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674 +L+GE+FN++SPKQLG +LF L P+G KTKTG + T A L+++ D PI+ ILE+ Sbjct: 527 ELAGEEFNINSPKQLGVVLFEHLSLPNGKKTKTG-YSTAADVLDKL-APDYPIVAKILEY 584 Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734 RQL+K+KSTYAD L I++ R+H ++ T TGR++S EPNLQNIP + +LG+ IR Sbjct: 585 RQLAKLKSTYADGLAVFIHEDDHRIHGKFNQTVTATGRISSTEPNLQNIPARVELGRLIR 644 Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794 + F+ + ADYSQIELR+LAH + L + + + DIHR+ A+++F ++V+ Sbjct: 645 KVFVPEEGYVFVDADYSQIELRVLAHCSGDAALIEAYREAKDIHRITASQVFHTPFDEVT 704 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 RR+AK +NF I+YGIS F L+ L I R EAA+YI RYF +PGI ++++ + Sbjct: 705 DLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAEYIDRYFETYPGIKKFLDDAVAHAK 764 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 + GYV T+FGRR E++S R ER A+N+PIQG+AADI + AMI+V K L Sbjct: 765 EQGYVVTLFGRRRPVPELSSSNFMQRQFGERVAMNSPIQGTAADIMKIAMIAVDKELRMR 824 Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++++LQ+HDEL+ E +EE +I+ M A +L VPL++++ NW E Sbjct: 825 NMKSRLVLQVHDELLIETWKEEEEEVREILKEGMMHAA----DLSVPLEIDMHSGKNWYE 880 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/322 (33%), Positives = 176/322 (54%), Gaps = 19/322 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAF+ P L+ +GL NAI GF N+++K+L+ + E + V FD Sbjct: 13 IVLIDGHSILNRAFFGLPDLTNA-EGLHTNAIYGFLNIMFKILEEEKPE----YLTVAFD 67 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++++ YK R + E L Q+PL++ A GI IE +G EADD++ T + Sbjct: 68 VHAPTFRHKMFEAYKGTRKPMAEELRQQVPLMKEVLHAMGIRTIEQEGLEADDLLGTLSK 127 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 E+ G V IIS D+DL+QL + P T T E ++ V +K+ + P + Sbjct: 128 RCERMGMEVVIISGDRDLLQLATDHVEIRIPKTKRTGTEIENYYAVD-VKEKYQVTPTEF 186 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DNIPG+PG+G KTA ++ EYG++EN +AS +K + +N++EY + Sbjct: 187 IDVKALMGDTSDNIPGVPGVGEKTATKIIVEYGSIENAYKHASELKPPRASKNLVEYWDQ 246 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A++S+ L + D LE L + + + L+F L+NR +D + N Sbjct: 247 AQMSKVLATIDVDADFAYELEEAKLGNLYTEEAYVYFQRLQFKNLLNR----FDVQSENS 302 Query: 300 --EPVVLDINTTENKGIAIETE 319 + V+ + E + I E E Sbjct: 303 IEDAFVIAVGKEEIQKIFAEAE 324 >gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3] gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3] Length = 890 Score = 340 bits (872), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 199/528 (37%), Positives = 316/528 (59%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K + N K + K + L GI ++G + D+++ +Y+LD + D ++A+ Sbjct: 371 FKAWLANGEMRKHTFDAKRAIVALKWKGIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 430 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P ++ V EH +V+ + +L + Sbjct: 431 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 486 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V++ ME+ G+++D + L+ + E++ L +E+ IY L+G +FN++SPK Sbjct: 487 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 546 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II NIL +RQL K+ STY + Sbjct: 547 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEG 604 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+++ Sbjct: 605 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 662 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIA L + F++ +DIH A ++FGV ++V+ MRR AK + Sbjct: 663 MYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 722 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R AA++I++Y FPG+ EY++ +Q GYV T+ Sbjct: 723 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLN 782 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQGSAADI + AMI + LE+ L ++LLQ+ Sbjct: 783 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKIAMIIMADRLEEEGLQARLLLQV 842 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE P+EEI +++ ME A I L VPLKV+ W Sbjct: 843 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 886 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 15 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 69 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 70 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 129 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++GF V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 130 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 189 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++ +E + N ++ KK +E + E Sbjct: 190 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENIDQVSGKKLKEKLEANKEQ 249 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 250 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 309 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 310 LDDITFDI 317 >gi|282848822|ref|ZP_06258215.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745] gi|282581476|gb|EFB86866.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745] Length = 873 Score = 340 bits (872), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 188/486 (38%), Positives = 289/486 (59%), Gaps = 23/486 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L++Y+LD R+++ + +++ S+P I++ V + Sbjct: 406 DMSLIAYLLDPTRTNYGYLYLTERF--------------SVP--SIANGSVDVECVSMVK 449 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 +L + + E+L +YE ++ P+I + ME GI ID + L + +A + L Sbjct: 450 ALLAMNEVACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTEKLAETTARFKEELT 509 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 ++E IY+L+GE FN++SPKQLG ILF KL P KTKTG + T A+ L+ + ++PI Sbjct: 510 QVQEEIYELAGETFNINSPKQLGVILFEKLNLPIIKKTKTG-YSTDAEVLDMLRH-ESPI 567 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 ++ IL +R ++K+ STY + L IN +T R+HT ++ T TGRL+S +PNLQNIP++T Sbjct: 568 VEKILAYRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 627 Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 + G++IR F L+SADYSQIELRILAH++ L + F DIHR AAE+ Sbjct: 628 EKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVL 687 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 G + ++V+ + R HAK INF IIYGIS F L+ L I R EA +YI YF R+P + EY+ Sbjct: 688 GKSQDEVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYM 747 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 ++ + G V T+FGR+ +INS + R+ ER A+N PIQG+AADI + AM Sbjct: 748 DRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQ 807 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 V + LE+ +++LLQ+HDELV EV E+ +++ +M+ + L+VPL V++ Sbjct: 808 VEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEELLRSTMQSV----VELQVPLIVDV 863 Query: 967 KVSNNW 972 + NW Sbjct: 864 HHAENW 869 Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 112/293 (38%), Positives = 174/293 (59%), Gaps = 10/293 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DGSS ++RAF+A P L + G P NA+ GF ML KL + E + AV FD Sbjct: 4 LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYE----EINPDYIAVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR E+Y +YK NRP PE L PQ L++ +A GI IE +GFE DDI+ + + Sbjct: 59 KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSLSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AV II+ D+D +QLV+ + ++ T K ++ ++++ + +G P+K++ + Sbjct: 119 KFGAPDMAVQIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVIEM 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +AL GDS DNIPG+PG+G KTA L+ EYGNLE++ + I KK +E ++E E A L Sbjct: 179 KALMGDSSDNIPGVPGVGEKTALKLITEYGNLESVYDHIEDISGKKLKERLVENKELAFL 238 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 SR+L ++TD+ ++ +E + ++ + + + L FTKL R+A C+ Sbjct: 239 SRELATIKTDMELSYKVEDFV-QNFHASEVQPLFETLGFTKLTPRIAQVMGCE 290 >gi|309799219|ref|ZP_07693468.1| DNA polymerase I [Streptococcus infantis SK1302] gi|308117153|gb|EFO54580.1| DNA polymerase I [Streptococcus infantis SK1302] Length = 680 Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 211/529 (39%), Positives = 311/529 (58%), Gaps = 19/529 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509 LK F E LK+ ++ K K++L+R+G+ ++ D L Y+L S +++I++IA Sbjct: 162 LKDFLEKTP-LKV-YDFKKAKVLLNRFGLDLQAPAFDSRLAKYLL-STVENNEISTIASL 218 Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 Q +L K K +IP EH V+++ +L KL L+ Sbjct: 219 YGQTYLVDDETFYGKGVKKAIP----ERETFLEHLARKVAVLVETEPVLLEKLSENGQLN 274 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + +++P+ V+++MEI GI++ ++ L ++ A + L + IY+L+GE+FN++SPK Sbjct: 275 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAGNELVIEKLTQEIYELAGEEFNINSPK 334 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG++LF L FP KT +TA D+ + PI+K IL++RQ++KI+STY Sbjct: 335 QLGELLFENLGFPIEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 394 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746 L + I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+ Sbjct: 395 LQDWI-LADGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 453 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S+DYSQIELR+LAHI+K L + F+ DIH A +FG+ E V+P RR+AK +N Sbjct: 454 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 513 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F ++YGIS F L+ L I R EA YI YF RFPGI Y+++ R GYVET+F R Sbjct: 514 FGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 573 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R +INS +IR ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+H Sbjct: 574 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVH 633 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DE+V EVP+ E+ +I+ +ME+A I L VPL + W E Sbjct: 634 DEIVLEVPKSELAAIKKIVKQTMEEA----IQLSVPLIADENEGVTWYE 678 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 46/89 (51%), Gaps = 6/89 (6%) Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIP 258 IG KT LL E+G+LE I N +K K +EN++ E A LS+ L + T PI I Sbjct: 4 IGEKTGIKLLLEHGSLEGIYENIDSMKASKMKENLVNDKEQAFLSKTLATIDTKAPIEIG 63 Query: 259 LEHLILEDCNGP---RLISFLKALEFTKL 284 L+ L+ NGP L F + F +L Sbjct: 64 LDDLV---YNGPDIENLGKFYDEMGFKQL 89 >gi|294793595|ref|ZP_06758732.1| DNA polymerase I [Veillonella sp. 3_1_44] gi|294455165|gb|EFG23537.1| DNA polymerase I [Veillonella sp. 3_1_44] Length = 877 Score = 340 bits (871), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 188/486 (38%), Positives = 289/486 (59%), Gaps = 23/486 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L++Y+LD R+++ + +++ S+P I++ V + Sbjct: 410 DMSLIAYLLDPTRTNYGYLYLTERF--------------SVP--SIANGSVDVECVSMVK 453 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 +L + + E+L +YE ++ P+I + ME GI ID + L + +A + L Sbjct: 454 ALLAMNEVACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTEKLAETTARFKEELT 513 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 ++E IY+L+GE FN++SPKQLG ILF KL P KTKTG + T A+ L+ + ++PI Sbjct: 514 QVQEEIYELAGETFNINSPKQLGVILFEKLNLPIIKKTKTG-YSTDAEVLDMLRH-ESPI 571 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 ++ IL +R ++K+ STY + L IN +T R+HT ++ T TGRL+S +PNLQNIP++T Sbjct: 572 VEKILAYRSVAKLVSTYCEGLAVLINDKTHRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 631 Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 + G++IR F L+SADYSQIELRILAH++ L + F DIHR AAE+ Sbjct: 632 EKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVL 691 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 G + ++V+ + R HAK INF IIYGIS F L+ L I R EA +YI YF R+P + EY+ Sbjct: 692 GKSQDEVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYM 751 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 ++ + G V T+FGR+ +INS + R+ ER A+N PIQG+AADI + AM Sbjct: 752 DRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQ 811 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 V + LE+ +++LLQ+HDELV EV E+ +++ +M+ + L+VPL V++ Sbjct: 812 VEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEELLRSTMQSV----VELQVPLIVDV 867 Query: 967 KVSNNW 972 + NW Sbjct: 868 HHAENW 873 Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 112/293 (38%), Positives = 174/293 (59%), Gaps = 10/293 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DGSS ++RAF+A P L + G P NA+ GF ML KL + E + AV FD Sbjct: 8 LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYE----EINPDYIAVAFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR E+Y +YK NRP PE L PQ L++ +A GI IE +GFE DDI+ + + Sbjct: 63 KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSLSK 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AV II+ D+D +QLV+ + ++ T K ++ ++++ + +G P+K++ + Sbjct: 123 KFGAPDMAVQIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVIEM 182 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +AL GDS DNIPG+PG+G KTA L+ EYGNLE++ + I KK +E ++E E A L Sbjct: 183 KALMGDSSDNIPGVPGVGEKTALKLITEYGNLESVYDHIEDISGKKLKERLVENKELAFL 242 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 SR+L ++TD+ ++ +E + ++ + + + L FTKL R+A C+ Sbjct: 243 SRELATIKTDMELSYKVEDFV-QNFHASEVQPLFETLGFTKLTPRIAQVMGCE 294 >gi|239632072|ref|ZP_04675103.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526537|gb|EEQ65538.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 881 Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 194/496 (39%), Positives = 301/496 (60%), Gaps = 28/496 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543 D++L SY+++ +S+D+ IA+ + R E + K K +P D ++ Sbjct: 399 DVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP----EDDKLFGQFA 454 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 SN + L L L + ++ ++ P+ V+++MEI GI ++ LK + E S Sbjct: 455 RKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFS 514 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 +++ LEE IY +G KFNL+SPKQLG+ILF KL P KTKTG + T+ L ++ Sbjct: 515 QSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YSTSVDVLNELKSA 573 Query: 664 DNPIIKNILEWRQLSKIKSTYA-----DSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 +PI+++IL++R +K+ STY LP+H ++HT Y T TGRL+S++P Sbjct: 574 -SPIVQDILDYRGWAKLNSTYVVGLLKAQLPDH------KIHTRYLQTLTQTGRLSSVDP 626 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 N+QNIP + D G+ IR+AF+ S ++ S+DYSQIELR+L+HI+ + + F++ +DI Sbjct: 627 NMQNIPAR-DEGKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDI 685 Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 H A +IFG++ ++V+P MRR AK NF I+YGIS + L+ + I R +A +I YF Sbjct: 686 HANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYF 745 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 ++P +H+Y++ R++GYVET+F RR + +I+S ++R ER A+N PIQGSA Sbjct: 746 DQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSA 805 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI + K+L++ L KMLLQ+HDEL+FE PEEEI S+++ M+ A + Sbjct: 806 ADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSA----V 861 Query: 957 NLRVPLKVNIKVSNNW 972 +L VPLKV W Sbjct: 862 HLDVPLKVESHYGPTW 877 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/312 (34%), Positives = 164/312 (52%), Gaps = 11/312 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + L LVDG+S +RAF+A L R DGL NAI F NML +L+ + ++ Sbjct: 1 MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDAA 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 V FD TFR Y DYK+ R K P LL QLP ++ GI E++ +EA Sbjct: 61 L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T A++ G+ TI++ D+DL QL + T + TVK E HV +K G Sbjct: 117 DDIIGTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P +++ L+ L GD+ DN PG+ +G KTA LL +YG++EN+ N +K+ K +EN+ Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSMENLYANVDDMKKSKLKENL 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 + + A LS++L + D P+T+ L + + +L F + L+ ++ + Sbjct: 237 INDKDNAFLSKQLATIDRDAPLTVDLADVTYAGPDLEKLRDFYTKMNMNSLLKKIGGSVA 296 Query: 294 CDAANIEPVVLD 305 + VLD Sbjct: 297 KPVQAVHFSVLD 308 >gi|299138180|ref|ZP_07031360.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8] gi|298600110|gb|EFI56268.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8] Length = 1022 Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 171/410 (41%), Positives = 258/410 (62%), Gaps = 5/410 (1%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L VYE+LD P++ V+ QME TG+++D +LL+++S+ ++ + L E IY SG +FN++ Sbjct: 616 LAEVYEQLDLPLVSVLLQMEQTGVRVDSNLLREMSSRLAVTIDDLAERIYASSGHRFNIN 675 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLGD+LF K+ P K G+ +TAQD+ + + + +LE+RQL K+KSTY Sbjct: 676 SPKQLGDVLFNKMDLPKPMKHGKGKVISTAQDILEDLAQHHEVPAIVLEYRQLQKLKSTY 735 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 D LP+ + R+HT ++ T TGRL+S+ PNLQNIPI+T +G++IR AFI+ P Sbjct: 736 LDQLPS-LTDVNGRIHTTFNQVGTATGRLSSINPNLQNIPIRTAVGREIRAAFIAAPGNL 794 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L+SADYSQIELR++AH ++ L + DIH + AAE+F V+ + + R AK + Sbjct: 795 LMSADYSQIELRLMAHFSQDPLLLDAYRTGKDIHTLTAAEVFEVDAATMDKETRARAKAV 854 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGISPF LA QL I + A YI+RYF R+ G+ +IE+T VR++ V+T FG Sbjct: 855 NFGIVYGISPFGLAAQLGIDQKVAKAYIERYFDRYKGVATFIEQTLETVRRDQAVKTAFG 914 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 R +I S + R ER A+N P+QG+AAD+ + AM+ + ++ L + M LQ+ Sbjct: 915 RVRPIPDIQSRNPNQRGFAERTAVNTPLQGTAADLIKIAMLRIDAAIRTRNLRSLMTLQV 974 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL+F+V EE +++ ME A VP+ + + +NW++ Sbjct: 975 HDELLFDVVPEEADEMQELVKTEMESAA----EFSVPIVAEVGLGDNWRD 1020 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 150/538 (27%), Positives = 249/538 (46%), Gaps = 60/538 (11%) Query: 7 LFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 ++L+D +FI+RA++A P+ +R G+P A F NM+ KL RK+ + A Sbjct: 10 IYLLDSMAFIFRAYHAMQRSRPMSTRT--GIPTAATYVFVNMINKL----RKDFQPQYLA 63 Query: 63 VIFDYPAVTFRNEI---------------------YPDYKANRPKIPEMLLPQLPLVRLA 101 ++D A RNE Y YKANR + P L+ Q P +R A Sbjct: 64 AVYDVGAPLLRNEQAKQMKDVQKFNIKTQEFETIEYGGYKANRAETPPDLIQQQPYIRRA 123 Query: 102 TQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE 161 +AF IP + +GFEADD+I T + G V ++S+DKD+MQLV+ + + +K+ Sbjct: 124 LEAFRIPILFYEGFEADDVIGTLSCQLSALGHHVYVVSSDKDMMQLVNEDVSILNPMKDN 183 Query: 162 KI-DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN 220 I D V G+PP ++V + AL GD+IDNIPG PGIG K + L+Q++G +E L Sbjct: 184 LILDPAGVENVLGVPPARVVDVMALRGDAIDNIPGAPGIGDKGSVELIQQFGTVEGALDR 243 Query: 221 ASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280 A+ +K+K RE++ + LS++LV + T VPI L+H+ + + + LE Sbjct: 244 AAEVKKKTYRESLQNNRDNILLSKELVTIHTAVPIEFSLDHMRTQPVDNAACRALFTELE 303 Query: 281 FTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK 340 FT ++ +A D DA PV +I T + + E R+ ++ + S Sbjct: 304 FTTMLKELAP--DVDAT---PVTYNIKATADDLAKLLAEA-REPSLAARDLEARSS---- 353 Query: 341 INSEQTPQKLFL---ERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD 397 + Q P+ L + E Q +++ + D + + Q + G A Sbjct: 354 -TANQLPRGLAIALAETTQAIAEE-VAADPSASAEVEESEPEPPQTMSLFG-ADEGAGDR 410 Query: 398 TMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFF 457 + S +A+S +D + ++ S D+ G +++ Sbjct: 411 AQGSGASSSELLALSPEPSQDPACRLGLAVTAGHAIEISLDTPG-----------IREAL 459 Query: 458 ENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLS 514 + K H++K L + I++ G D+ML SY+L+ SSH + +A + S Sbjct: 460 ADPALPKQVHDLKAVLRALQPHDITLAGPITDVMLQSYLLNPTHSSHTLIDLAARTTS 517 >gi|327382740|gb|AEA54216.1| DNA polymerase I [Lactobacillus casei LC2W] gi|327385927|gb|AEA57401.1| DNA polymerase I [Lactobacillus casei BD-II] Length = 881 Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 194/496 (39%), Positives = 301/496 (60%), Gaps = 28/496 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543 D++L SY+++ +S+D+ IA+ + R E + K K +P D ++ Sbjct: 399 DVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP----EDDKLFGQFA 454 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 SN + L L L + ++ ++ P+ V+++MEI GI ++ LK + E S Sbjct: 455 RKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFS 514 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 +++ LEE IY +G KFNL+SPKQLG+ILF KL P KTKTG + T+ L ++ Sbjct: 515 QSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YSTSVDVLNELKSA 573 Query: 664 DNPIIKNILEWRQLSKIKSTYA-----DSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 +PI+++IL++R +K+ STY LP+H ++HT Y T TGRL+S++P Sbjct: 574 -SPIVQDILDYRGWAKLNSTYVVGLLKAQLPDH------KIHTRYLQTLTQTGRLSSVDP 626 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 N+QNIP + D G+ IR+AF+ S ++ S+DYSQIELR+L+HI+ + + F++ +DI Sbjct: 627 NMQNIPAR-DEGKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDI 685 Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 H A +IFG++ ++V+P MRR AK NF I+YGIS + L+ + I R +A +I YF Sbjct: 686 HANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYF 745 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 ++P +H+Y++ R++GYVET+F RR + +I+S ++R ER A+N PIQGSA Sbjct: 746 DQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSA 805 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI + K+L++ L KMLLQ+HDEL+FE PEEEI S+++ M+ A + Sbjct: 806 ADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSA----V 861 Query: 957 NLRVPLKVNIKVSNNW 972 +L VPLKV W Sbjct: 862 HLDVPLKVESHYGPTW 877 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/312 (34%), Positives = 165/312 (52%), Gaps = 11/312 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + L LVDG+S +RAF+A L R DGL NAI F NML +L+ + ++ Sbjct: 1 MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDAA 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 V FD TFR Y DYK+ R K P LL QLP ++ GI E++ +EA Sbjct: 61 L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T A++ G+ TI++ D+DL QL + T + TVK E HV +K G Sbjct: 117 DDIIGTMDKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P +++ L+ L GD+ DN PG+ +G KTA LL +YG++EN+ N +K+ K +EN+ Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSMENLYANVDDMKKSKLKENL 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 + ++A LS++L + D P+T+ L + + +L F + L+ ++ + Sbjct: 237 INDKDSAFLSKQLATIDRDAPLTVDLADVTYAGPDLDKLRDFYTKMNMNSLLKKIGGSVA 296 Query: 294 CDAANIEPVVLD 305 + VLD Sbjct: 297 KPVQAVHFSVLD 308 >gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1] gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1] Length = 869 Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 201/533 (37%), Positives = 317/533 (59%), Gaps = 26/533 (4%) Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDI 505 ++ L+YLK +E + K +NIK L GI ++G D+ L SY+L+ ++ Sbjct: 352 QDFLNYLK----DEKYSKYSYNIKAQILSARWNGIDIKGMNFDLQLASYILNPSLKD-EM 406 Query: 506 ASIAQKW----LSYTRKEILKSRKSSIP-IDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 SI + + Y + K K IP ID ++ H + + I L +L Sbjct: 407 KSICDYYDYDSVQYEEEVFGKLAKKHIPEIDLLA-----RHTVSKAKAIYDLKDEAIQRL 461 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 E+ +Y+ L+ P+ +++ ME G +ID +LK++ + + + +EE+IY L+ ++ Sbjct: 462 KDEEQFDLYQNLELPVTYILADMEYVGAKIDIHVLKEMEMDFEQQIKQIEEDIYMLADKE 521 Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD-LEQINCGDNPIIKNILEWRQLSK 679 FN+SSPKQLG++LF +L P+G KTKTG +T+QD LE+I G +PII I ++R L+K Sbjct: 522 FNISSPKQLGEVLFERLGLPNGKKTKTGY--STSQDILEKIE-GLHPIIPLIQKYRMLTK 578 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 + STY L + ++HT Y+ A T TGRL+S+EPNLQNIP++ + G+ IR+AFI Sbjct: 579 LSSTYVKGLQEQVFADG-KIHTIYNQALTQTGRLSSIEPNLQNIPVRQEEGKLIRKAFI- 636 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 P L++ DYSQIELRILAH+A + L + F DIH AA +F V E+V+ MRR Sbjct: 637 PSHDYLVTFDYSQIELRILAHLAGVQSLIEAFNQDKDIHTHTAALVFKVKDEEVTANMRR 696 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK +NF IIYG+ F+L+ Q+ + EA ++I+RYF +P I Y+++ + GYV Sbjct: 697 QAKAVNFGIIYGMGEFKLSQQIGVSLKEAKEFIRRYFEEYPEIKVYMDQIVEDCKNTGYV 756 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 T+ R+ + IN +R R A+N+PIQGS ADI + AM+ V++ ++D L ++ Sbjct: 757 STVLNRKRYIPTINDKNFMVREQARRFAMNSPIQGSGADILKLAMMKVNQLMKDKHLKSE 816 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 M+LQ+HDEL+F+V ++E+ ++I +M +A + VPLKV+ ++NW Sbjct: 817 MILQVHDELIFDVYKDELDEMMKLIKSAMVEA----FQMDVPLKVDGAYASNW 865 Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 100/293 (34%), Positives = 157/293 (53%), Gaps = 19/293 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+ +++ ++YAT + DG+P NA+ GF N L +++ + K V Sbjct: 4 LVLIDGNYWLFSSYYATAAMGNLMVNKDGIPTNAVFGFANRLENVIKKNPK-----GIMV 58 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+++ +YK R + PE L Q +VR A IP E++G+E DDII T Sbjct: 59 AFDAKGKTFRSDLLEEYKGTRKETPEELKCQFEIVREFLDAHQIPYCELEGYEGDDIIGT 118 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEKM 179 K+G+ V I++ DKD+MQLV +Y T ++ I + +K+ + P++M Sbjct: 119 LATQGSKQGYQVNIMTGDKDMMQLVDEHIHVYKRNTKTKTDDVITPKTFYEKYELQPDQM 178 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEY 236 L L GDS DNIPGIPG+G KTA LL EY +EN+ + S IK K K RENI Sbjct: 179 RDLLGLMGDSADNIPGIPGVGEKTALKLLHEYQTIENLKDHCSEIKGKMGEKIRENI--- 235 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 E S+++ + D+P+ + L+ + +L F + + L+ +++ Sbjct: 236 -ELGIQSKQIATILKDIPLDVTLDDCHYVGYDFDKLKDFYQKYDMNSLLKKIS 287 >gi|191638699|ref|YP_001987865.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23] gi|190713001|emb|CAQ67007.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23] Length = 881 Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 194/496 (39%), Positives = 301/496 (60%), Gaps = 28/496 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543 D++L SY+++ +S+D+ IA+ + R E + K K +P D ++ Sbjct: 399 DVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP----EDDKLFGQFA 454 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 SN + L L L + ++ ++ P+ V+++MEI GI ++ LK + E S Sbjct: 455 RKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFS 514 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 +++ LEE IY +G KFNL+SPKQLG+ILF KL P KTKTG + T+ L ++ Sbjct: 515 QSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YSTSVDVLNELKSA 573 Query: 664 DNPIIKNILEWRQLSKIKSTYA-----DSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 +PI+++IL++R +K+ STY LP+H ++HT Y T TGRL+S++P Sbjct: 574 -SPIVQDILDYRGWAKLNSTYVVGLLKAQLPDH------KIHTRYLQTLTQTGRLSSVDP 626 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 N+QNIP + D G+ IR+AF+ S ++ S+DYSQIELR+L+HI+ + + F++ +DI Sbjct: 627 NMQNIPAR-DEGKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDI 685 Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 H A +IFG++ ++V+P MRR AK NF I+YGIS + L+ + I R +A +I YF Sbjct: 686 HANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYF 745 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 ++P +H+Y++ R++GYVET+F RR + +I+S ++R ER A+N PIQGSA Sbjct: 746 DQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSA 805 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI + K+L++ L KMLLQ+HDEL+FE PEEEI S+++ M+ A + Sbjct: 806 ADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSA----V 861 Query: 957 NLRVPLKVNIKVSNNW 972 +L VPLKV W Sbjct: 862 HLDVPLKVESHYGPTW 877 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/312 (34%), Positives = 165/312 (52%), Gaps = 11/312 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + L LVDG+S +RAF+A L R DGL NAI F NML +L+ + ++ Sbjct: 1 MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDAA 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 V FD TFR Y DYK+ R K P LL QLP ++ GI E++ +EA Sbjct: 61 L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T A++ G+ TI++ D+DL QL + T + TVK E HV +K G Sbjct: 117 DDIIGTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P +++ L+ L GD+ DN PG+ +G KTA LL +YG++EN+ N +K+ K +EN+ Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSMENLYANVDDMKKSKLKENL 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 + ++A LS++L + D P+T+ L + + +L F + L+ ++ + Sbjct: 237 INDKDSAFLSKQLATIDRDAPLTVDLADVTYAGPDLDKLRDFYTKMNMNSLLKKIGGSVA 296 Query: 294 CDAANIEPVVLD 305 + VLD Sbjct: 297 KPVQAVHFSVLD 308 >gi|253578996|ref|ZP_04856267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849939|gb|EES77898.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 849 Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 196/499 (39%), Positives = 299/499 (59%), Gaps = 28/499 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D + +Y+L+ +SS+ +A+++L+ IL +R +++ + E A E S Sbjct: 365 DAGVAAYLLNPLKSSYTYDDMAKEYLN---GRILPAR------EELLGKKTVEKAWEESA 415 Query: 548 VILQLWL-------LLRPKLIVEKL-----LHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 L W L K + E L +VY +++ P+I + ME GI + + L Sbjct: 416 EGLAAWACYMAYTALACRKPMCEALRDTGMWNVYTQIELPLIFTLDSMEKWGISVKSEEL 475 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 K ++S + LE+ I+ +GE+FN++SPKQ+G ILF KL G KTKTG + T A Sbjct: 476 KSYGEKLSVRIGELEKQIWQQAGEEFNINSPKQMGVILFEKLGLKGGKKTKTG-YSTAAD 534 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 LE++ + PI+K+ILE+RQL+K+KSTYAD L I + R+H+ ++ T TGR++S Sbjct: 535 ILEKL-APEYPIVKDILEYRQLAKLKSTYADGLVGEIAE-DGRIHSTFNQTITATGRISS 592 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 EPNLQNIP++ +LG+ IR+ F+ + ADYSQIELR+LAH++ L Q ++ + Sbjct: 593 TEPNLQNIPVRMELGRLIRKVFVPEEGYVFLDADYSQIELRVLAHMSGDEKLIQAYKEAQ 652 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 DIHR A+E+F V ++V+ RR+AK +NF I+YGIS F L+ L I R EAA+YI+RY Sbjct: 653 DIHRHTASEVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAEYIERY 712 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +P I +++ ++ GYV T+FGRR E+ S R+ ER A+N+PIQG+ Sbjct: 713 FETYPKIKGFLDGLVEEGKEKGYVTTMFGRRRPIPELKSGNFMQRSFGERVAMNSPIQGT 772 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM V++ L+D L ++++LQ+HDEL+ E +EEI S I+ M+ A Sbjct: 773 AADIIKIAMNRVYRRLKDENLKSRLVLQVHDELLIETCKEEIPQVSAILEEEMKGAA--- 829 Query: 956 INLRVPLKVNIKVSNNWQE 974 L V L+V++ NNW E Sbjct: 830 -KLSVELEVDMHQGNNWYE 847 Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 86/266 (32%), Positives = 137/266 (51%), Gaps = 20/266 (7%) Query: 76 IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135 ++ YK R +PE L Q+PL++ A G+ + +G+EADDI+ T +E G Sbjct: 1 MFEAYKGTRKPMPEELREQVPLIKEMLTAMGVNVVTKEGYEADDILGTLARKSEAAGMDA 60 Query: 136 TIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 TI+S D+DL+QL + P T T E+ + VI+K+ + P +++ L+AL GD Sbjct: 61 TILSGDRDLLQLATDKVMIRLPKTVRGKTTIED-YHAQQVIEKYQVTPPQIIELKALMGD 119 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248 S DNIPGIPG+G KTA ++ EYG++EN + +K + RE++ E+ + A++S+ L Sbjct: 120 SADNIPGIPGVGEKTATKIIVEYGSIENAHEHLEELKPNRARESMREHYDMAQMSKALAT 179 Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT-----------YDC-DA 296 + TD PI E L + + LEF L+NR + + C D Sbjct: 180 ICTDSPIEFSYEKAKLGNLYTKEAFLLCRQLEFKNLLNRFDSAAVQEDTLEQEFFTCADL 239 Query: 297 ANIEPVVLDINTTENKGIAIETEIDR 322 A E + + G+++ TE R Sbjct: 240 AGCEALFAKAEAGKTAGVSLVTENGR 265 >gi|312898329|ref|ZP_07757719.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] gi|310620248|gb|EFQ03818.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] Length = 857 Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 188/488 (38%), Positives = 295/488 (60%), Gaps = 22/488 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L +Y+LD R+++ + +++ + T E+ + Q + Sbjct: 389 DVTLAAYLLDPTRTAYGLTYLSEVF-GRTLNEV--------------KGEAQNETANEAA 433 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 + L+ ++ L + L ++E ++ P+ ++ ME+ G +++D L+++ A++S+ Sbjct: 434 FVYSLYGPVQQALEEKGLSSLFETIESPLERTLAVMELNGFTVNRDRLEEMKADLSREAD 493 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 +LE IYDL+GE FN++S KQLG ILF K+ P KTKTG + T + LE++ + I Sbjct: 494 ALETEIYDLAGESFNINSTKQLGVILFEKMGLPVIKKTKTG-YSTDSSVLEEL-AEQSEI 551 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 + IL++R L K+ STY D L I+++T+RV+T ++ T TGRL+S +PNLQNIPI+T Sbjct: 552 VPKILKFRALKKLISTYLDGLEPLIDEKTERVYTSFNQMVTATGRLSSSDPNLQNIPIRT 611 Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 + G+KIR F+ L+S DYSQIELR+LAH+++ + F+++ DIHR A+E+F Sbjct: 612 EQGRKIRSFFVPGEGYDYLVSGDYSQIELRLLAHLSQDPTMIDGFKHNQDIHRRTASEVF 671 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 GV ++V+ ++R HAK +NF IIYGIS F L+ L I R+ A +YI+ YF R+ IH+Y+ Sbjct: 672 GVPFDEVTGELRSHAKAVNFGIIYGISDFGLSRNLGITRNRAKEYIESYFARYSTIHDYM 731 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 R+ G T+FGR EI+S R+ ER A+N PIQGSAADI + AM + Sbjct: 732 NGLVEEARRTGESRTMFGRLRTLPEISSKNFMRRSFAERTAMNTPIQGSAADIIKLAMNA 791 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 V K LE L ++ML+Q+HDELV EVP +E T +++ +ME+ + L VPL +I Sbjct: 792 VQKKLEALNLHSRMLVQVHDELVLEVPAQEKETIEKLLKETMEEV----VTLSVPLIADI 847 Query: 967 KVSNNWQE 974 NW+E Sbjct: 848 HTGTNWEE 855 Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 108/288 (37%), Positives = 157/288 (54%), Gaps = 10/288 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 +L ++DGSS +YRAFYA P LS G P NA+ GF NML KL + + AV F Sbjct: 4 NLMIIDGSSLLYRAFYAMPPLSDSQ-GRPTNAVYGFLNMLLKLYADLD----PYYVAVAF 58 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNE+Y DYKA R P+ L PQ L+R GI +E +G+E DDII T Sbjct: 59 DKDKHTFRNELYADYKATRKPAPDELRPQFALIREVLACLGIHVLETEGYEGDDIIGTVA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--EEKIDI--EHVIKKWGIPPEKMVC 181 + +V++I+ D+D +QLV +Y T K E + + + + +++G P +++ Sbjct: 119 KQVPTDNTSVSVITGDRDALQLVDDNITVYLTKKGISEMLAVTPDVMQEEYGYTPAQVID 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++AL GD+ DNIPG+PG+G KTA L+ EYG +E + + I KK RE + + + A Sbjct: 179 MKALMGDTSDNIPGVPGVGEKTALKLITEYGTVEGVYEHLDDISGKKLREKLADNKDKAM 238 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 LS++L + VP+ E L + K L F L+ R A Sbjct: 239 LSKELATINCHVPVEFD-EAGFLPHPREGEVRDLFKQLGFRNLLKRFA 285 >gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca] Length = 750 Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 263/804 (32%), Positives = 425/804 (52%), Gaps = 87/804 (10%) Query: 202 KTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261 KTA LL EYG+L++I + ++IK + + + E A S+ + + DVP+ I E Sbjct: 1 KTAVKLLAEYGSLDSIYESVNQIKGAIANK-LKQGQELAYHSQTMARIICDVPLDINWED 59 Query: 262 LILEDCNGPRLISFLKALE---FTKLINRVATT----YDCD-----AANIEPVVLDINTT 309 L+ + LI LK LE F IN++ + +D + +A+ P L+I+ Sbjct: 60 CQLQGFDSQELIPLLKQLEFHGFINKINQLQSQFKGLFDVEINSSISASSPPTELEISEN 119 Query: 310 ENKGIAIETEI--DRDTTIKTSQFS-SLSDQTSKINSEQTPQKL--FLERLQKL--SQYP 362 + + DTT++T + S+ Q QTP+ L + RL+ + P Sbjct: 120 NDNNEDEDVWFFSAEDTTLETKAIAPSIHPQII-----QTPEALAILVNRLKTHINPEKP 174 Query: 363 INNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 + D+ T + +D L IG ++D Sbjct: 175 VAWDTETTSLEPRD-----ANLVGIGCCWGSELSDLA----------------------- 206 Query: 423 KVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 +I L+ HT G+ +++L L+ E+E + K N K+D+L+L GI+ Sbjct: 207 -----YIPLN-HTQ----GEMLNIEQVLEALRPILESEEYPKTLQNAKFDRLILRSQGIT 256 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK-ISDSQVQE 540 ++G D ML SY+++ SSH++ ++ ++L + +S +P K I+D + Sbjct: 257 LKGVVFDTMLASYIINP-ESSHNLTDLSLRYLP-DLGIVAQSYSQLVPKGKTIADLDINT 314 Query: 541 HA-IENSNVILQLWLLLRPKLIVE---KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 A +V + + + I++ +L + ++++P+ +++ ME GI+ID D L Sbjct: 315 VANYCGLDVFTTFQITQKMQDILKDLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLN 374 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTA 654 Q+S ++ + L +LE+ + +GE FNL SPKQL ++LF +L+ KTKTG + T A Sbjct: 375 QLSQQLGETLDNLEKTSHQAAGEVFNLGSPKQLSELLFDRLQLDRKKSRKTKTG-YSTDA 433 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE++ D+P+I +ILE+R LSK+KSTY D+LP + T R+HT ++ A T TGRL+ Sbjct: 434 TVLEKLK-HDHPVINSILEYRTLSKLKSTYVDALPELVRSDTGRIHTDFNQAITSTGRLS 492 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S PNLQNIPI+T+ ++IR+AFI L+SADYSQIELRILAH+++ L + + + Sbjct: 493 SSHPNLQNIPIRTEFSRQIRKAFIPESGWLLVSADYSQIELRILAHLSQEKVLIEAYNTN 552 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 D+H + A +F + + ++P+ RR K INF +IYG+ R A ++ + + +I R Sbjct: 553 QDVHSLTAKLLF--DRDGITPEERRLGKIINFGVIYGMGAQRFAREVGVSATAGKQFIDR 610 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE----RAAINA 890 + ++PG+ EY+E K GYVETI GRR +++ + N + RAA NA Sbjct: 611 FNSQYPGVFEYLESQKLAAINQGYVETILGRRRYFESLKGRDRDRLNYQDEQMLRAAANA 670 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGS+ADI + AMI + + L++++ ++LLQ+HDELVFEVP E I +ME Sbjct: 671 PIQGSSADIIKIAMIKLAEILKNYQ--ARLLLQVHDELVFEVPLSEWEELEYQIKSTMEN 728 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 CL L VPL V+I NW E Sbjct: 729 -CL---FLSVPLVVDIHAGTNWME 748 >gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991] gi|158433853|gb|EDP12142.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991] Length = 861 Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 185/489 (37%), Positives = 298/489 (60%), Gaps = 21/489 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEIL-KSRKSSIPIDKISDSQVQEHAI 543 D+ML +++LD S +D +A+K+ + +++++ K K + +++ + + + A Sbjct: 386 DVMLEAFLLDGMISDYD--KLAEKYAFDCTLSKEDVFGKKGKPKLVVEEDAAAYAMQCAE 443 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 +N+ QL+ L K + E +Y+ ++ P+++V+ ME G+ + L++++ Sbjct: 444 NLANIEQQLFDELEQKDMKE----LYDTIEMPVVEVLYAMEKEGVHTSVETLQEIAEATG 499 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 K + +L IY+ +G +FN++SPKQL +L+ +L P G K TG A LE++ Sbjct: 500 KKIEALNAQIYEYAGMEFNINSPKQLAVVLYDELGLPCGKKRSTG-----ADVLEKLKPV 554 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 +PII +LE R+ KI STYA L HI K ++HT ++ T TGRL+S EPNLQNI Sbjct: 555 -HPIISLLLEQRKYQKIYSTYAVGLSKHILKDG-KIHTIFNQIQTQTGRLSSSEPNLQNI 612 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 ++ + G+ IR+AF++ P L+SADYSQIELR+LAH+A + Q F +DIH A Sbjct: 613 SVRDEEGKVIRKAFVASPQHTLMSADYSQIELRMLAHMANEKTMIQAFNQGIDIHNQTAM 672 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 +IF V+ + V MRR AKT+NF I+YG S F L+ QL I EA +I +YF +P I Sbjct: 673 QIFDVDHDHVDSNMRRSAKTVNFGIVYGQSDFGLSEQLGITMKEAKRFIDKYFASYPNIK 732 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 +++ T F +NGYV+T+FGRR + EIN +R +RAA+NAPIQGSAAD+ + A Sbjct: 733 TFMDDTIAFCEENGYVKTMFGRRRYIKEINDKNYMMREFGKRAAMNAPIQGSAADLIKLA 792 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ +++++++ K+ ++M+LQIHDEL+F+V ++E+ T I+ M++A + LRVPL Sbjct: 793 MVHIYQTMKEKKVKSRMILQIHDELIFDVCDDELDTMKDIVEQGMQQA----MQLRVPLI 848 Query: 964 VNIKVSNNW 972 W Sbjct: 849 AEASFGKTW 857 Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 98/262 (37%), Positives = 156/262 (59%), Gaps = 17/262 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG+S ++RA+YAT L R +G+P NA+ GF M+ K L + + V Sbjct: 4 LLLIDGNSMLFRAYYAT-LYGRMMTTSNGIPTNAVYGFITMVNKALDMIDPDYVF----V 58 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +D TFR+ Y +YK R ++ + L+ Q P+VR A GI E +G EADDII + Sbjct: 59 AWDAGKPTFRHTTYKEYKGTRKELDKELIVQFPIVREYLDAAGIKRYECEGIEADDIIGS 118 Query: 124 YTYIAEKE-GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178 IA++ A+ I+S+D+DL+QL+ PTT +Y K E +D +++ + + P++ Sbjct: 119 ---IAKQHPELAIHILSSDRDLLQLIDPTTDVYLMKKGISEIEVMDEAQLMETYTLCPQQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ L+AL GDS DNIPG+ GIG KTA LL+EY +++N+ + + IK K +E + E Sbjct: 176 IIDLKALMGDSADNIPGVKGIGEKTAIKLLKEYQSVDNVYEHIAEIK-GKLKEKLENGKE 234 Query: 239 TARLSRKLVMLRTDVPITIPLE 260 +A LS+ L ++TD I + ++ Sbjct: 235 SAFLSKFLATIKTDAKIPVDMK 256 >gi|291520593|emb|CBK75814.1| DNA polymerase I [Butyrivibrio fibrisolvens 16/4] Length = 901 Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 184/491 (37%), Positives = 292/491 (59%), Gaps = 11/491 (2%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQ-VQEHAI 543 D+ + +Y+L+ ++++ +A + L + ++ K + ++ S + V +A Sbjct: 416 DVAVAAYLLNPTKNAYTADDVASEILGIIIPAQADLFGKTKLNAALEDDSMLEAVTTYAC 475 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 N+ V + + ++ E +L +YE ++ P++ + ME+ GI +D++ L + + +S Sbjct: 476 YNAYVAFAAFEKVIAEIKEEGMLDIYENIEMPLVYTLFDMELQGIAMDKEALAEYGSRLS 535 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + LE++IY +GE+FN++SPKQLG ILF K+ G KTKTG + T A LE+++ Sbjct: 536 VRINELEQSIYSQAGEEFNINSPKQLGVILFEKMGIEGGKKTKTG-YSTAADVLEELSA- 593 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 NPII +ILE+RQL+K+KSTYAD L +++ R+ + + T TGR++S EPNLQNI Sbjct: 594 TNPIICDILEYRQLAKLKSTYADGLAACVDE-DGRIRSTFMQTVTATGRISSTEPNLQNI 652 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 PI+ +LG++IR+ F + ADYSQIELR+LAH++ L F+ DIHR A+ Sbjct: 653 PIRMELGREIRKVFYPKKDCVFLDADYSQIELRVLAHMSGDENLIDAFKAGQDIHRSTAS 712 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 +F ++V+ RR AK +NF I+YGIS F LA + + R EA +YI YF +P +H Sbjct: 713 LVFNTPFDEVTDLQRRRAKAVNFGIVYGISAFGLAKDIGVGRKEAQEYIDNYFVAYPKMH 772 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 E++E K+ ++ GYV T++GRR E+ S R ER A+N+PIQG+AADI + A Sbjct: 773 EFLEGLKSHAKEKGYVTTMYGRRRPIPELASSNFMTRQFGERVAMNSPIQGTAADIIKIA 832 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M++VH L L +K+LLQ+HDEL+ E E E ++I ME A L V L+ Sbjct: 833 MVNVHDRLLKEGLKSKLLLQVHDELLVETLESERPQVEKLIAEEMENAA----KLAVDLE 888 Query: 964 VNIKVSNNWQE 974 +++ W E Sbjct: 889 IDMNSGKTWAE 899 Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 160/290 (55%), Gaps = 13/290 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG S RAFY P L+ G AI GF NM+ K + + + + +FAV Sbjct: 2 SKLLLIDGHSIANRAFYGVPDLTNSA-GEHTGAIFGFLNMMLKFIDDEQPD----NFAVA 56 Query: 65 FDYPAVTFRNEIYPDYKANR-PKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A TFR++++ YK R P +PE L Q+P ++ +A G+P I +G+EADDI+ T Sbjct: 57 FDVSAPTFRHKMFDAYKGTRKPMLPE-LKEQIPRIQEMLKAMGVPVITKEGWEADDILGT 115 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPE 177 + E++GF VTI+S D+DL+QL + + K+ +IE+ V + +G+ P+ Sbjct: 116 LARMGEEKGFDVTIVSGDRDLLQLATDKVKISIPKTKKGGTEIENYYAADVKEAYGVTPK 175 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 + + ++AL GDS DNIPG+ GIG KTA + EYG++E + +K+ K +N ++ Sbjct: 176 QFIDVKALQGDSSDNIPGVEGIGPKTAEKWIAEYGSIEECHAHVDEMKKGKVLQNFIDQW 235 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 E A LS++L + PI + LE+ K E KL+ R Sbjct: 236 EMAVLSKELATINVYAPIQLEEGSTKLENLFTEEAYLLCKRYELKKLLPR 285 >gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29] gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29] Length = 890 Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 198/528 (37%), Positives = 316/528 (59%), Gaps = 20/528 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 K + N K + K + L GI ++G + D+++ +Y+LD + D ++A+ Sbjct: 371 FKAWLANGEMRKRTFDAKRAIVALKWKGIDIQGIDFDLLIAAYLLDPADTDKDFRTVAKM 430 Query: 512 WLSYTRK---EIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ K E+ K K ++P ++ V EH +V+ + +L + Sbjct: 431 KETHAVKSDEEVYGKGAKRAVPELEV----VAEHVARKVHVLYDVKQTFLEELKKNEQYE 486 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ L+ P+ V++ ME+ G+++D + L+ + E++ L +E+ IY L+G +FN++SPK Sbjct: 487 LFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPK 546 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF L P KTKTG + T+A L+++ + II NIL +RQL K+ STY + Sbjct: 547 QLGVILFENLNLPVIKKTKTG-YSTSADVLDKL-MNHHEIIPNILHYRQLGKLNSTYIEG 604 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--- 744 L +++ + ++HT ++ T TGRL+S +PNLQNIPI+ + G+KIR+AF+ P+++ Sbjct: 605 LLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFV--PSEEGWI 662 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 + +ADYSQIELR+LAHIA L + F++ +DIH A ++FGV ++V+ MRR AK + Sbjct: 663 MYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAV 722 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGIS + L+ L I R AA++I++Y FPG+ EY++ +Q GYV T+ Sbjct: 723 NFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLN 782 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + EI S ++R+ ER A+N PIQGSAADI + AMI + L++ L ++LLQ+ Sbjct: 783 RRRYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKIAMIIMADRLDEEGLQARLLLQV 842 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+FE P+EEI +++ ME A I L VPLKV+ W Sbjct: 843 HDELIFEAPKEEIEKLEKLVPEVMEHA----IELAVPLKVDYSYGPTW 886 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 109/308 (35%), Positives = 174/308 (56%), Gaps = 10/308 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG++ YRAF+A PLL+ G+ NAI GF ML ++L+ + +H V Sbjct: 15 EKKVVLVDGNNIAYRAFFALPLLNNDK-GIHTNAIYGFTMMLMRILEEEK----PTHMLV 69 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y +YK R K P L Q P +R AF +P E++ +EADDI+ T Sbjct: 70 AFDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGT 129 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTT--CL--YDTVKEEKIDIEHVIKKWGIPPEKM 179 A ++GF V +IS DKDL+QLVS T C+ + ++ E + +K+ + P+++ Sbjct: 130 LAKEASEQGFHVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQI 189 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++ L GD DNIPG+PG+G KTA LL ++ +E + N ++ KK +E + E Sbjct: 190 IDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFETVEAVYENIDQVSGKKLKEKLEANKEQ 249 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA-AN 298 A +S+ L + TD PIT+ ++ + + +I + L FT L+N++ T + A A Sbjct: 250 ALMSKDLATIITDAPITVHVDDMEYKGYEASDVIPMFENLGFTSLLNKLGVTPEETAPAE 309 Query: 299 IEPVVLDI 306 ++ + DI Sbjct: 310 LDDITFDI 317 >gi|162447216|ref|YP_001620348.1| DNA polymerase I [Acholeplasma laidlawii PG-8A] gi|161985323|gb|ABX80972.1| DNA polymerase I [Acholeplasma laidlawii PG-8A] Length = 880 Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 191/491 (38%), Positives = 292/491 (59%), Gaps = 16/491 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543 D++L +Y++ S D IAQ++ + Y + K K ++P+ S + H Sbjct: 400 DLLLAAYLIQSSIGKQDFTFIAQQFQITDIQYDEEVYGKGAKKALPL---IPSDYEGHIA 456 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 + + +I +L L L + ++ P+ DV++ ME G+ +D L+ + ++S Sbjct: 457 KKAYIIHKLMQQTLDVLTERNQLSLLNDVELPLSDVLADMEYQGLTVDLKELENQTKDMS 516 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + L I L+G FN+ SPKQLGD+LF L P+G KTKTG + T + L + Sbjct: 517 LRIDKLRTEILLLAGVDFNVDSPKQLGDVLFDTLGLPNGKKTKTG-YSTGIEVLNNL-ID 574 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 +PII I+E+RQL+K+ STY + + + RVHT Y+ A T+TGRL+SLEPNLQNI Sbjct: 575 HHPIINLIIEYRQLTKLYSTYLIGIKESVFE-DNRVHTIYNQALTLTGRLSSLEPNLQNI 633 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 PI+T+ G++IR+ FI P + ADYSQIELR+LA +A + L Q FE DIH + A Sbjct: 634 PIRTEEGRQIRKLFIPEPDSYFVGADYSQIELRVLAAMADVKNLKQAFEEDQDIHTVTAQ 693 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 ++F +++ V + RR AK +NF IIYGI P+ L+ + + EA ++I RY +P I Sbjct: 694 KVF--HVDTVDSEQRRRAKAVNFGIIYGIGPWSLSEDIGVTVKEAENFISRYLEVYPEIK 751 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 +Y+ F + +GYVET+ RR + E++S ++R +R ++NAPIQG+AADI + A Sbjct: 752 DYMTNIVEFAKTHGYVETLLNRRRYIPELSSKVFNLREFGKRTSLNAPIQGTAADIIKLA 811 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 MI +H L+D+K +K++LQ+HDEL+ EV +EE+ ++I + MEKA NL V LK Sbjct: 812 MIDLHNYLKDNKKKSKLILQVHDELIVEVVKEELDEMKEVIPNIMEKA----FNLGVRLK 867 Query: 964 VNIKVSNNWQE 974 + V NNW E Sbjct: 868 TSCDVGNNWYE 878 Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 109/285 (38%), Positives = 156/285 (54%), Gaps = 14/285 (4%) Query: 9 LVDGSSFIYRAFYATPLLSRK----HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 LVDG+S ++RA+ AT K G+ NA+ F M+ K+++ S SH + Sbjct: 6 LVDGNSILFRAYNATAYPGAKVLQTSTGIYTNAVFAFSGMIDKIIEISN-----SHMLIA 60 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD T R++ Y DYKA R ++PE L Q+PL+ + GI + G+EADDII T Sbjct: 61 FDTGEPTHRHKSYDDYKAGRKEMPEELGSQIPLIHELIKYLGIKEYSMAGYEADDIIGTL 120 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 +AEK G+ V + S+D DL+QLV+ ++ K E E + + +G E + Sbjct: 121 AKMAEKAGYKVDVFSSDYDLLQLVTEHITVHMLKKGMRVVETYTPETLKETYGFSHELFI 180 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DNIPG+PG+G TA L+ EYG LENIL NA IK K ENI E A Sbjct: 181 DFKALVGDKSDNIPGVPGVGEVTAKKLIAEYGTLENILNNAEHIK-GKLGENIRTNKEQA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 S++L + TD+P+ LE + + + LI+F K LE +L+ Sbjct: 240 VFSKELSTILTDMPLPFDLEDTKVGEVDEESLINFYKRLELKQLV 284 >gi|322377942|ref|ZP_08052430.1| DNA polymerase I [Streptococcus sp. M334] gi|321281118|gb|EFX58130.1| DNA polymerase I [Streptococcus sp. M334] Length = 889 Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 301/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++LHR+G+ ++ D L Y+L S ++IA+IA Q +L Sbjct: 383 YDFKKAKVLLHRFGLDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 441 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + EH V+++ +L KL L + +++P+ V++ Sbjct: 442 KGVKKALP----EREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 497 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 498 KMEIAGITVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPL 557 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 558 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 616 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 617 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 676 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ E V+ RR+AK +NF ++YGIS F L+ Sbjct: 677 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGLSN 736 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 737 NLGISRKEAKSYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 796 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 797 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAE 856 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 857 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 887 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 114/288 (39%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 18 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 70 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 71 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGICHYELAQYEADDI 130 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E +++++K GI P Sbjct: 131 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGITP 190 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ IG KT LL E+G+LE I N +K K +EN++ Sbjct: 191 TQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLIHD 250 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 251 KEQAFLSKTLATIDTKAPIEIGLEDLVYSGPDVENLGKFYDEMGFKQL 298 >gi|317014884|gb|ADU82320.1| DNA polymerase I [Helicobacter pylori Gambia94/24] Length = 905 Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 286/994 (28%), Positives = 470/994 (47%), Gaps = 120/994 (12%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ + Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKTKPLTNDK--GFPTGLLTGLVGMVKKFYKDKKN---M 61 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 + T R E +YK NR P+ +L Q+P+ Q G +EI GFEAD Sbjct: 62 PFIVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEISGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IAT +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAT---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN GI GIG K A LLQ+ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGIKGIGNKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E+A LS++L L ++ C P LK + K ++T D + Sbjct: 237 DKESAFLSKELATLERGC-----IKEFDFSSCVFPSENPLLKIKDELKEYGFISTLRDLE 291 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 + +V EN I +D T+ ++ + D T ++S TP+K + L Sbjct: 292 NSPTPLIV------ENAPI-----LDNAPTLDST---PILDNTPTLDS--TPKKSRMIVL 335 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAIAISTL 414 + NT + ++++L+ + F +++ D K +A+A Sbjct: 336 E----------------NTAPLSAFLEELKNPNARVFMRLVLDK----EKKVLALAFLLQ 375 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN--EHFLKIGHNIK-Y 471 DQ + E +F S L +L+ F +H IGH++K Sbjct: 376 DQGYFLPLE-EALFSPFS-----------------LEFLENAFSQILQHAQIIGHDLKPL 417 Query: 472 DKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSS 527 + +Y + + +D +++++ + + D E+LK ++ Sbjct: 418 LSFLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLKEDL 463 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLR------PKLIVEKLLHVYERLDKPMIDVVS 581 IP +KI D + + A ++ + ++L L R + E LL + ++ P + V+ Sbjct: 464 IPHEKIKDFKTKSKAEKSEQLNMELNALKRLCEHFEKGGLEEDLLILARDIETPFMKVLM 523 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME G +ID K++ E L LE I DL G FNL+SPKQLG++L+ KL P Sbjct: 524 GMEFQGFKIDAPYFKRLEQEFKNELNVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLP- 582 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 K T ++L +I +P I ILE+R+L+K+ +TY L + + ++HT Sbjct: 583 ----KNKSHSTDEKNLLKI-LDKHPSIPLILEYRELNKLFNTYTTPLL-RLKDKDDKIHT 636 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAH 760 + T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+LAH Sbjct: 637 TFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAH 696 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L + F DIH + +FG E+++ + R AK+INF ++YG+ +L+ Sbjct: 697 FSQDKDLMEAFLKGRDIHLETSKALFG---EELAKEKRSIAKSINFGLVYGMGSKKLSET 753 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L IP +EA YI+ YF RFP I +Y+ + + + T+ GR +D N I+ Sbjct: 754 LNIPLNEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVFD-FNGVNDYIK 812 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Sbjct: 813 GNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPEL 871 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q I + P LRVPL+ + ++ W E Sbjct: 872 QQEIQRILNDEVYP---LRVPLETSAFIAKRWNE 902 >gi|315612199|ref|ZP_07887114.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296] gi|315315760|gb|EFU63797.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296] Length = 889 Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 210/529 (39%), Positives = 311/529 (58%), Gaps = 19/529 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509 K+F E LK+ ++ K K++L+R G++++ D L Y+L S +++I++IA Sbjct: 371 FKEFLEKTP-LKV-YDFKKAKVLLNRLGLNLQAPAFDSRLAKYLL-STVENNEISTIANL 427 Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 Q +L K K +IP + EH V+++ +L KL L Sbjct: 428 YGQTYLVDDETFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLD 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + +++P+ V+++MEI GI++ ++ L ++ AE + L + IY+L+GE+FN++SPK Sbjct: 484 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELAGEEFNINSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF KL P KT +TA D+ + PI+K IL++RQ++KI+STY Sbjct: 544 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 603 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746 L + I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+ Sbjct: 604 LQDWI-LDDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 662 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S+DYSQIELR+LAHI+K L + F+ DIH A +FG+ E V+P RR+AK +N Sbjct: 663 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 722 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F ++YGIS F L+ L I R EA YI YF RFPGI Y+++ R GYVET+F R Sbjct: 723 FGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 782 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R +INS +IR ER AIN+PIQGSAADI + AMI + K+L + TKMLLQ+H Sbjct: 783 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 842 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DE+V EVP+ E+ ++ +ME+A I L VPL + W E Sbjct: 843 DEIVLEVPKSELAAVKALVKQTMEEA----IQLSVPLIADENEGATWYE 887 Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/285 (39%), Positives = 153/285 (53%), Gaps = 11/285 (3%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DGSS +RAF+A L R +GL NAI GF ML +L+ SH V Sbjct: 18 LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PSHVLV 73 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDII T Sbjct: 74 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDYLGIRHYELAQYEADDIIGT 133 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 +AEK+ F VTI+S DKDL+QL T + + K E +++++K G+ P + Sbjct: 134 LGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGLTPAQF 193 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD DNIPG+ IG KT LL E+G+LE+I N +K K +EN++ E Sbjct: 194 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLESIYENIDGMKASKMKENLINDKEQ 253 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 A LS+ L + T PI I L+ L+ + L F + F +L Sbjct: 254 AFLSKTLATIDTQAPIEIGLDDLLYSGPDVENLGKFYDEMGFKQL 298 >gi|257784906|ref|YP_003180123.1| DNA polymerase I [Atopobium parvulum DSM 20469] gi|257473413|gb|ACV51532.1| DNA polymerase I [Atopobium parvulum DSM 20469] Length = 912 Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 187/489 (38%), Positives = 283/489 (57%), Gaps = 23/489 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D + +Y+L+S RSS DI + + + E P D+I + ++ A Sbjct: 443 DTGVAAYLLESDRSSFDINGLVELYFGSELPE---------PTDEIPAAALRAVAARALV 493 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 +L KL + L ++ L+ ++ V++ ME G+ +D L + SA++ +++ Sbjct: 494 PVLT------KKLEDDGSLELFTSLEMQLLPVLAAMERRGLYVDPQKLAEQSAQLGEDIA 547 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDN 665 +I+ +GE FNL SP QL ILF LK P+ KT+TG + T A+ L ++ + Sbjct: 548 QRVASIHQTAGEDFNLDSPSQLSHILFDVLKLPTYGLKKTRTGFYSTNAKVLGEL-AQEY 606 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 I+ ++LE+R+ +KIKSTY D+LP+ I + +R+HT + T TGRL+S +PNLQNIP Sbjct: 607 QIVADVLEYRERAKIKSTYLDALPSLI-RGDKRIHTTLNQTVTATGRLSSSDPNLQNIPT 665 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 +++LG ++R AF P ++ DYSQIELR+LAH++ L F + D H AA + Sbjct: 666 RSELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADEHLVAAFNSGADFHAATAARV 725 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 FGV +E+V+P +R AK +NF I+YG F LAT L+I R EA + I RYF +PG+ Y Sbjct: 726 FGVPVEEVTPALRSRAKAVNFGIVYGQQAFGLATSLKISRKEAQEMIDRYFDAYPGVRAY 785 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 ++ + + GY T++GR+ H E N + ER A+N P+QGSAADI + AMI Sbjct: 786 LDDSVRTAHECGYAITMYGRKRHIREFNQSNRQLIAFGERTAMNHPMQGSAADIIKIAMI 845 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 +V K L D L +K++LQIHDEL EVPE EI T S ++ +ME + LRVPL + Sbjct: 846 NVEKRLRDEGLTSKLILQIHDELDLEVPESEIETVSTLVKETMEDV----VTLRVPLIAD 901 Query: 966 IKVSNNWQE 974 + +NW E Sbjct: 902 VSYGSNWAE 910 Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 95/296 (32%), Positives = 153/296 (51%), Gaps = 10/296 (3%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++DG+S ++RAF+A DG P A+ GF NM KL+++ + + FD Sbjct: 32 VIDGNSLMHRAFHAIRQPMAAPDGTPTGALFGFFNMFIKLVESFSPDGVI----CAFDKG 87 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 R ++ P YKA RP + L Q P+V+ + +P +++G+E DDI+ T Sbjct: 88 KPQIRIDMLPQYKAQRPPMDPALHAQFPVVKELLKTLDVPVCQLEGWEGDDILGTLARRG 147 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKIDIEHVIKKW--GIPPEKMVCLQ 183 E EG+ + + + D+D+ QL + + T V + I + GI PE + Sbjct: 148 EAEGYQMLLFTGDRDMYQLSTENVKIVSTRKGVSDVSIMTPETVADLYAGITPELVPDFY 207 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 L GDS DNIPG+PGIG K AA L+ EYG+L+ ++ +A +K K EN+ + + A LS Sbjct: 208 GLKGDSSDNIPGVPGIGPKKAAALIVEYGSLDEVIAHADEVK-GKVGENLRAHIDDALLS 266 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 RK+ +RTD P+ I L+ + ++ AL FT + +R+A A+ + Sbjct: 267 RKVATIRTDAPLDINLDDAKFPTFDPNDVVKAFSALGFTGMTSRLARMAGGSASGV 322 >gi|227534792|ref|ZP_03964841.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187548|gb|EEI67615.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 881 Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 193/496 (38%), Positives = 302/496 (60%), Gaps = 28/496 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543 D++L SY+++ +S+D+ IA+ + R E + K K +P D ++ Sbjct: 399 DVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP----EDDKLFGQFA 454 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 S+ + L L L ++ ++ ++ P+ V+++MEI GI ++ LK + E S Sbjct: 455 RKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFS 514 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 +++ LEE IY +G KFNL+SPKQLG+ILF KL P KTKTG + T+ L ++ Sbjct: 515 QSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YSTSVDVLNELKSA 573 Query: 664 DNPIIKNILEWRQLSKIKSTYA-----DSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 +PI+++IL++R +K+ STY LP+H ++HT Y T TGRL+S++P Sbjct: 574 -SPIVQDILDYRGWAKLNSTYVVGLLKAQLPDH------KIHTRYLQTLTQTGRLSSVDP 626 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 N+QNIP + D G+ IR+AF+ S ++ S+DYSQIELR+L+HI+ + + F++ +DI Sbjct: 627 NMQNIPAR-DEGKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDI 685 Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 H A +IFG++ ++V+P MRR AK NF I+YGIS + L+ + I R +A +I YF Sbjct: 686 HANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYF 745 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 ++P +H+Y++ R++GYVET+F RR + +I+S ++R ER A+N PIQGSA Sbjct: 746 DQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSA 805 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI + K+L++ L KMLLQ+HDEL+FE PEEEI S+++ M+ A + Sbjct: 806 ADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSA----V 861 Query: 957 NLRVPLKVNIKVSNNW 972 +L VPLKV W Sbjct: 862 HLDVPLKVESHYGPTW 877 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/312 (34%), Positives = 164/312 (52%), Gaps = 11/312 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + L LVDG+S +RAF+A L R DGL NAI F NML +L+ + ++ Sbjct: 1 MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDAA 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 V FD TFR Y DYK+ R K P LL QLP ++ GI E++ +EA Sbjct: 61 L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T A++ G+ TI++ D+DL QL + T + TVK E HV +K G Sbjct: 117 DDIIGTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P +++ L+ L GD+ DN PG+ +G KTA LL +YG++EN+ N +K+ K +EN+ Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSMENLYANVDDMKKSKLKENL 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 + + A LS++L + D P+T+ L + + +L F + L+ ++ + Sbjct: 237 INDKDNAFLSKQLATIDRDAPLTVDLADVTYAGPDLDKLRDFYTKMNMNSLLKKIGGSVA 296 Query: 294 CDAANIEPVVLD 305 + VLD Sbjct: 297 KPVQAVHFSVLD 308 >gi|116495190|ref|YP_806924.1| DNA polymerase I [Lactobacillus casei ATCC 334] gi|116105340|gb|ABJ70482.1| DNA polymerase I [Lactobacillus casei ATCC 334] Length = 881 Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 193/496 (38%), Positives = 302/496 (60%), Gaps = 28/496 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543 D++L SY+++ +S+D+ IA+ + R E + K K +P D ++ Sbjct: 399 DVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP----EDDKLFGQFA 454 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 S+ + L L L ++ ++ ++ P+ V+++MEI GI ++ LK + E S Sbjct: 455 RKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFS 514 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 +++ LEE IY +G KFNL+SPKQLG+ILF KL P KTKTG + T+ L ++ Sbjct: 515 QSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YSTSVDVLNELKSA 573 Query: 664 DNPIIKNILEWRQLSKIKSTYA-----DSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 +PI+++IL++R +K+ STY LP+H ++HT Y T TGRL+S++P Sbjct: 574 -SPIVQDILDYRGWAKLNSTYVVGLLKAQLPDH------KIHTRYLQTLTQTGRLSSVDP 626 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 N+QNIP + D G+ IR+AF+ S ++ S+DYSQIELR+L+HI+ + + F++ +DI Sbjct: 627 NMQNIPAR-DEGKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDI 685 Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 H A +IFG++ ++V+P MRR AK NF I+YGIS + L+ + I R +A +I YF Sbjct: 686 HANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYF 745 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 ++P +H+Y++ R++GYVET+F RR + +I+S ++R ER A+N PIQGSA Sbjct: 746 DQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSA 805 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI + K+L++ L KMLLQ+HDEL+FE PEEEI S+++ M+ A + Sbjct: 806 ADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELVPKVMDSA----V 861 Query: 957 NLRVPLKVNIKVSNNW 972 +L VPLKV W Sbjct: 862 HLDVPLKVESHYGPTW 877 Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 110/312 (35%), Positives = 165/312 (52%), Gaps = 11/312 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + L LVDG+S +RAF+A L R DGL NAI F NML +L+ + ++ Sbjct: 1 MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDAA 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 V FD TFR Y DYK+ R K P LL QLP ++ GI E++ +EA Sbjct: 61 L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T A++ G+ TI++ D+DL QL + T + TVK E HV +K G Sbjct: 117 DDIIGTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P +++ L+ L GD+ DN PG+ +G KTA LL +YG++EN+ N +K+ K +EN+ Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSMENLYANVDDMKKSKLKENL 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 + + A LS++L + DVP+T+ L + + +L F + L+ ++ + Sbjct: 237 INDKDNAFLSKQLATIDRDVPLTVDLADVTYAGPDLDKLRDFYTKMNMNSLLKKIGGSVA 296 Query: 294 CDAANIEPVVLD 305 + VLD Sbjct: 297 KPVQAVHFSVLD 308 >gi|169348423|ref|ZP_02866361.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552] gi|169293892|gb|EDS76025.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552] Length = 873 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 203/527 (38%), Positives = 311/527 (59%), Gaps = 18/527 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 + F +E K G++IK +G+ ++ + D+ L SY+L+ +I S+ + Sbjct: 358 FQNFINDESIEKYGYDIKKCINAAKWHGLEIKNYVFDLQLASYILNPSLKD-EIRSVCEY 416 Query: 512 WLSYTR---KEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + Y +E+ K K IP + + +H I+ + I L KL E Sbjct: 417 YDYYDVLYDEEVYGKGAKKKIP----ETTAIADHLIKQAKAIYVLKDKAIEKLKQENQFD 472 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +Y+ ++ P+ +++ ME G +ID+D+LK + + K + LE+ I+ L+ + FN++SPK Sbjct: 473 LYKDVEMPVAKILASMEYQGAKIDKDVLKDLENQFGKEIEVLEKEIHQLANKNFNIASPK 532 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG++LF L P+G KTKTG + T+ L ++ +PII +L++R LSK+ STY Sbjct: 533 QLGEVLFEDLGLPNGKKTKTG-YSTSVDILNKLK-DVHPIINKVLQYRTLSKLYSTYIIG 590 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747 L I ++HT Y+ A T TGRL+S +PNLQNIP+KT G+ IR+AFI P L+S Sbjct: 591 LQEQIF-VDGKIHTIYNQALTQTGRLSSTDPNLQNIPVKTAEGKLIRKAFI-PEYDYLVS 648 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 DYSQIELR+LAH+A + L + F DIHR A+EIFGV+ ++V MRR+AK +NF Sbjct: 649 FDYSQIELRVLAHLANVKSLIKAFNEDKDIHRHTASEIFGVDEDEVDSTMRRNAKAVNFG 708 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 IIYG+S F LA Q+ +P +EA ++IKRYF +P I Y++ F ++NGYV T+ R+ Sbjct: 709 IIYGMSDFGLAEQVGVPVNEARNFIKRYFENYPEIKTYMDNNIEFCKKNGYVTTMLNRKR 768 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 EIN + + +R A+N+PIQGSAADI + AMI V + + H L +KM+LQ+HDE Sbjct: 769 FIREINEKNYMRQELGKRLAMNSPIQGSAADIIKVAMIKVDELFKKHNLKSKMILQVHDE 828 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+F+V +EE+ +++ M A + + V LK + NW E Sbjct: 829 LIFDVYKEELEEVMEVVAKGMTTA----VKMNVELKSEGSYAINWYE 871 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/343 (34%), Positives = 182/343 (53%), Gaps = 27/343 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M K L L+DG+S +YRA+YAT + DG+P NA+ GF NML +L+ + Sbjct: 1 MDKMKELVLIDGNSLLYRAYYATAAMGNLMVNKDGIPTNAVYGFANMLENILKGN----- 55 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 + V FDY TFRN+++ YK R P+ L+ Q ++R A GI EI+G+E Sbjct: 56 PEYIVVAFDYGKKTFRNDLFEVYKGTRSATPDELVCQFSMIREYLTAHGIHYQEIEGYEG 115 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DD+I T IA K+ F V+I+++DKD++QLV +Y T K EKI E + +G Sbjct: 116 DDVIGTIASIASKKRFKVSIVTSDKDMLQLVDDNVSVYLTKKGVAELEKITPEKFKEMYG 175 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRR 230 + P++M L+ L GD DNIPGIPG+G KTA LL++Y +EN+ + +K K K R Sbjct: 176 LIPDQMRDLKGLMGDKADNIPGIPGVGEKTALKLLKQYHTIENLNDHLDELKGKMGEKIR 235 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 +NI + LS+K+ + DVP+ + L+ + + L F + L+ R++ Sbjct: 236 DNI----DQGLLSKKIATIIKDVPMELDLDDFYYQGFDYNELAEFYRRYNMNSLLKRMSL 291 Query: 291 TYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSS 333 + N V+D+ + I I RD++I F S Sbjct: 292 ---ANEDNKGETVIDVKIVDCLPI-----IKRDSSIVVGVFDS 326 >gi|188586506|ref|YP_001918051.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351193|gb|ACB85463.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF] Length = 930 Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 195/494 (39%), Positives = 293/494 (59%), Gaps = 23/494 (4%) Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545 F D LM+Y+L+ + H I + ++ D Q + E Sbjct: 451 FYDTELMAYLLEPTEAPHSIEDMMNRYYG--------------QFDLTPYGQDWQAVCER 496 Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 ++L L L L +Y+ ++ P+ ++++ME GI++D +L ++ A I Sbjct: 497 GAILLDLISPLEDILQERNQWQLYKNIELPLAFILARMEFRGIKVDARVLTEMEANIDHR 556 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 L + I++++GE+FNL+SPKQLG ILF KL+ P KTKTG + T A+ LE ++ D Sbjct: 557 LSEISTKIFEIAGEEFNLNSPKQLGYILFEKLQLPVVKKTKTG-YSTDAKTLETLSH-DY 614 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 I K +L++RQL K+K+TY L + I+K T ++HT Y+ T TGRL+S +PNLQNIPI Sbjct: 615 EICKLLLDYRQLHKLKTTYLVGLKDLISKTTGKIHTTYNQTITATGRLSSTDPNLQNIPI 674 Query: 726 KTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 K + G+KIR+ F+ + +L ++ADYSQIELRILAH+++ T L Q F+ DIH AA+ Sbjct: 675 KLEEGRKIRKGFVIQNSDQLFLAADYSQIELRILAHVSEDTNLIQAFQEQQDIHTQTAAQ 734 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +F V +V+ +MR HAK +NF I+YGIS + L+ QL I R +A YI Y RF G+ E Sbjct: 735 VFEVESTQVTREMRSHAKAVNFGIVYGISDYGLSRQLGISRKQAKTYIDNYLTRFSGVKE 794 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 Y+++ N + NGYVET++ RR + +I+ +IR+ ER AIN PIQG+AADI + AM Sbjct: 795 YMDQIVNQAKMNGYVETLYNRRRNLPDISHRNFNIRSAAERTAINTPIQGTAADIIKDAM 854 Query: 905 ISVHKSLEDH--KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 + V K LE +LLQ+HDEL+ E+ +E ++ + + ME I L+VPL Sbjct: 855 VKVEKELEKQDLLDKAALLLQVHDELILEINKEVLSDVATKVKEIMENI----IELKVPL 910 Query: 963 KVNIKVSNNWQEEN 976 V++K NW + N Sbjct: 911 TVDLKTGPNWYDLN 924 Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/278 (37%), Positives = 161/278 (57%), Gaps = 18/278 (6%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 Q + ++DG+S + RAFYA PLL K G NAI GF ML KL+Q+ ++ Sbjct: 7 QANDKFVVIDGNSLLNRAFYALPLLQTKQ-GFFTNAIYGFTTMLLKLVQDES----PNYL 61 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 AV+FD A TFR+ +P+YK +R K P+ + PQ+P+++ +A I E G+EADD+I Sbjct: 62 AVVFDTKAKTFRHHKFPEYKGHRDKAPDEMRPQMPMLKELLEAMNINYFEKDGYEADDLI 121 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177 +T IA++E +++ DKDL+QL+ T + T K E D E V +++G+ + Sbjct: 122 GAFTKIAKQEDKETMVVTGDKDLLQLLDDKTTILLTKKGITQMESYDGEKVKEEFGVNVD 181 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 K++ L+ALTGD DN+PG+PG+G KTA LL YG+LE + + + K + + + Sbjct: 182 KLIDLKALTGDKSDNVPGVPGVGKKTALKLLNNYGDLEKLYKSLDGVG-GKLQSKLADNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF 275 + A LS++LV TI E ++E+ + +L F Sbjct: 241 DKAFLSKELV--------TIDCEESLIENLDWNQLSKF 270 >gi|302336109|ref|YP_003801316.1| DNA polymerase I [Olsenella uli DSM 7084] gi|301319949|gb|ADK68436.1| DNA polymerase I [Olsenella uli DSM 7084] Length = 922 Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 181/489 (37%), Positives = 282/489 (57%), Gaps = 23/489 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ + Y+LDS +S +A + + + + E P D++ + + ++ Sbjct: 453 DVAVAGYLLDSDAASFSVADLVSREMDMSLPE---------PTDELPQAAL------DAV 497 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 L LL +L + ++ L+ P++ V+ QME TG+ D L + S E+ + Sbjct: 498 GAWALCPLLARRLEEDGSKGLFCDLEMPLLRVLLQMERTGLHADAGRLAEQSRELGSEID 557 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDN 665 + I + E FN+ SP+QL +LF P+ +TK G + T A+ LE + D Sbjct: 558 CMVATIKADADEDFNMDSPQQLSHVLFDVWGLPTFGLKRTKKGFYSTNAKTLEDLAQQDG 617 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 + + IL++R+ +KIKSTY D+LP I +R R+HT + TGRL+S PNLQNIP Sbjct: 618 RV-RMILDYRERAKIKSTYLDALPADI-RRDGRIHTTLNQTVAATGRLSSSAPNLQNIPT 675 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 +++LG ++R AF P ++ DYSQIELR+LAH++ L F + D H AA + Sbjct: 676 RSELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADGHLVGAFNSGADFHAATAARV 735 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 FGV +E+V+PQ+R AK +NF I+YG F LA+ LRI R+EA + I RYF +PG+ Y Sbjct: 736 FGVPVEEVTPQLRSRAKAVNFGIVYGQQAFGLASSLRIGRAEAQEMIDRYFEAYPGVRAY 795 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 ++++ +F R+ GY T++GR+ H +IN+ +R+ ER A+N P+QG+AADI + AM+ Sbjct: 796 LDQSVDFARKRGYAVTMYGRKRHIRDINARNFQLRSFAERTAMNHPMQGTAADIIKLAMV 855 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 V + L L +K++LQIHDEL FEVP++EI S+++ +ME C LRVPL + Sbjct: 856 RVAERLRQEGLRSKLVLQIHDELDFEVPKDEIEVLSKLVKETMEGVC----ELRVPLLAD 911 Query: 966 IKVSNNWQE 974 + NW E Sbjct: 912 VSYGANWAE 920 Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/290 (32%), Positives = 148/290 (51%), Gaps = 20/290 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++DG+S ++RAF+A DG NA+ GF NML KL+ + + + FD Sbjct: 41 VIDGNSLMHRAFHAIRQPMSAPDGRATNALFGFFNMLVKLVDSFSPDGVI----CAFDKG 96 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 R ++ P YKA RP + E L Q P+V+ +A +P +E+ G+E DDI+ T Sbjct: 97 KPQVRIDMLPQYKAQRPPMDESLHEQFPMVKDLLRALDVPVVELAGWEGDDILGTLARRG 156 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHVIKKWGIPPEK 178 E G+ + + + D+D+ QL + + T K E D+ H GI P+ Sbjct: 157 EAAGYEMLLFTGDRDMYQLATENVKIVSTKKGVSDVAIMTPESVDDLYH-----GITPDL 211 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + L GD DNIPG+PGIG K AA L+ +YG+L+ ++ +A ++ K E++ + + Sbjct: 212 VPDFYGLKGDGSDNIPGVPGIGPKKAAALIVQYGSLDEVIAHADEVRGKM-GESLRAHVD 270 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 A LSRK+ +RTD PI + + + + AL FT +I R+ Sbjct: 271 DALLSRKVATIRTDAPIEFDFDDARFPTFDAAEVSAAFSALGFTGMIRRL 320 >gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946] gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946] Length = 846 Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 174/413 (42%), Positives = 264/413 (63%), Gaps = 8/413 (1%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 E+L +Y ++KP+ V++QME G+ +D L+++S E+ K L LE I+ L+G FN Sbjct: 439 ERLWWLYREVEKPLAAVLAQMECRGVALDVPYLQELSEELGKELGYLEAEIHRLAGHPFN 498 Query: 623 LSSPKQLGDILFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 ++S QL IL+ +L +G K T TG+ T A LE++ +PI+ IL++R+L+K+K Sbjct: 499 VNSRDQLEAILYDELGLQAGGKKTTTGKRSTAASVLEEMRS-LHPIVGKILDYRELAKLK 557 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 TY D LP I+ +T R+HT ++ TGRL+S +PNLQNIP++T++G+KIR+AF++ Sbjct: 558 GTYLDPLPKLIHPKTGRLHTRFNQTVAATGRLSSSDPNLQNIPVRTEVGRKIRKAFVAEK 617 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 L+ ADYSQIELRILAH++ L +VF DIH AA +FG+ EKV PQ RR A Sbjct: 618 GYCLVVADYSQIELRILAHLSGDENLKKVFTERRDIHTQTAAWMFGLEPEKVDPQHRRAA 677 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 KTINF ++YG+S RL+ +L I +EA+ +I+RYF +P + +IEKT R+ GYVET Sbjct: 678 KTINFGVLYGMSAHRLSGELGISYAEASGFIERYFASYPKVRLWIEKTLAEGRERGYVET 737 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 +FGRR ++ S +I+ ER A N P+QG+AAD+ + AM+ ++ L++ ++ Sbjct: 738 MFGRRRFVADLESKNRAIKEAAERMAFNMPVQGTAADLMKLAMVKLYPKLKER--GAHLV 795 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LQ+HDELV E PE ++++ M+ L VPL+V + + +NW E Sbjct: 796 LQVHDELVVEAPEPLAKEVAEVMCEVMQNVW----ELDVPLEVGVGIGHNWLE 844 Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 101/286 (35%), Positives = 154/286 (53%), Gaps = 7/286 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + L+DG YR ++A L+ G V AI GF L KLL+ I Sbjct: 19 LPRPERVVLIDGHHLAYRNYFALERLT-TSKGEGVQAIFGFIRTLLKLLKEDGHCVI--- 74 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD P TFR++ + YKA R P+ L Q+ ++ + G+ +E+ G+EADD+ Sbjct: 75 --VVFDPPTRTFRHDNFEAYKAGRAPTPDDLPGQIQKIKEIVEQMGLKRLEVPGYEADDV 132 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T AE+EG+ V I++ D+D QL+S ++ + V +K+G+ E+ V Sbjct: 133 IGTLAKKAEREGYEVRIVTGDRDAFQLLSDRVWVW-LPDGGVMGPNQVKEKYGVGVEQWV 191 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 +AL GD DNIPG GIG K AA LL E+G+LEN+L + +K ++ RE + E Sbjct: 192 DYRALIGDPSDNIPGAKGIGPKGAAKLLAEWGSLENLLAHLEEVKPERLRELLRASLEDI 251 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 RLS +L +RTD+PI + + + N RL L+ALEF ++ Sbjct: 252 RLSYELSKMRTDLPIDLDFPACHVREMNRERLRQELEALEFGSILR 297 >gi|308062734|gb|ADO04622.1| DNA polymerase I (polA) [Helicobacter pylori Cuz20] Length = 893 Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 281/992 (28%), Positives = 472/992 (47%), Gaps = 128/992 (12%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E+A LS++L L ++ C P Sbjct: 237 DKESAFLSKELATLERGC-----IKEFDFLSCAFP------------------------- 266 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 +EN + I+ E+ I S+L D E +P L L+ Sbjct: 267 -------------SENPLLKIKDELKEYGFI-----STLRDL------ENSPTPLILDNT 302 Query: 356 QKLSQYPINNDSYTK-----IVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAI 409 L P+++++ K + NT+ + +++KLE + F +++ D K +A+ Sbjct: 303 PLLENAPLSDNAPKKSRLIVLENTEPLSAFLEKLENSNARIFMRLVLDK----EKKVLAL 358 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHN 468 A DQ + E +F S+ Q++ FF+ +H IGH+ Sbjct: 359 AFLYEDQGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHVQIIGHD 401 Query: 469 IK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKS 523 +K + +Y +S+ +D +++++ + + D + +++L E +K Sbjct: 402 LKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--EVLKEYLKEELIPHETIKD 459 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 K+ ++K+ ++ +A++ +L + E LL + ++ P++ V+ M Sbjct: 460 FKTKNKVEKLEQLDMELNALK------RLCEYFEKGGLEEGLLALARGVETPLMKVLMGM 513 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E G +ID K++ E L LE I DL G FNL+SPKQL +IL+ KL+ P Sbjct: 514 EFQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQN- 572 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 K+++ K+ + L++ +P I ILE+R+L+K+ +TY L + + ++HT + Sbjct: 573 KSRSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTF 626 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIA 762 T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+LAH + Sbjct: 627 IQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFS 686 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L F DIH + +FG E ++ + R AK+INF ++YG+ +L+ L Sbjct: 687 QDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLN 743 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IP +EA YI+ YF RFP I +Y+ + K + + T+ GR +D I+ Sbjct: 744 IPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDHIKGN 802 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Q Sbjct: 803 YLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNALKLQQ 861 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I + P L+VPL+ + V+ W E Sbjct: 862 EIQRILNDEVYP---LKVPLETSAFVAKRWNE 890 >gi|317133543|ref|YP_004092857.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3] gi|315471522|gb|ADU28126.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3] Length = 870 Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 187/486 (38%), Positives = 281/486 (57%), Gaps = 20/486 (4%) Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 +D ML+ Y+L+ SS+ A + +++ + ++P D S ++ + Sbjct: 400 DDTMLLGYLLNPLASSYAPARLCEEY------TVFPPATENVP-DGFSG------CVDTA 446 Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 + L +L KL +Y ++ P+ V++QME G +D + + K L Sbjct: 447 LAVRALAPVLLRKLTENGQEKLYREVELPLARVLAQMEHAGFLVDAAGIAAYGETLGKKL 506 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666 ++E+ I D G FNL+SPKQLG+ LF KL P G KTKTG W T+A L+++ G +P Sbjct: 507 AAIEQEIVDAVGYPFNLNSPKQLGEALFVKLGLPHGKKTKTG-WSTSADVLDKLR-GAHP 564 Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 I +L +R+LSK+KSTY D L I R+H+ ++ T TGR++S EPNLQNIP++ Sbjct: 565 AIDALLGYRKLSKLKSTYTDGLLKVIAP-DGRIHSSFNQVETRTGRISSTEPNLQNIPVR 623 Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 + G+++RR F++ P L+ ADYSQIELRILAHIA + F N DIH + A+++F Sbjct: 624 SAEGRELRRFFVARPGWVLVDADYSQIELRILAHIADDAAMIAAFNNHEDIHTITASQVF 683 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 G+ E V+P MR AK +NF I+YGI F L+ + + EA YIK Y +F G+ +Y+ Sbjct: 684 GMPPEYVTPIMRSRAKAVNFGIVYGIGAFSLSQDIGVSVKEADSYIKGYLQKFSGVRDYM 743 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 E+ + GYVET+FGRR E+ S ++R ER A N PIQG+AADI + AM+ Sbjct: 744 ERVIREAHEKGYVETLFGRRRVLPELLSSNHNMRAFGERVARNTPIQGTAADIIKIAMVR 803 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 V LE ++ + ++LQ+HDEL+ E PE+E A QI+ ME A +LRV L+ ++ Sbjct: 804 VRDRLEREQMQSALILQVHDELIVEAPEDEAARAGQILEEEMEGAA----SLRVRLEADV 859 Query: 967 KVSNNW 972 + W Sbjct: 860 HTGHTW 865 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 110/302 (36%), Positives = 160/302 (52%), Gaps = 12/302 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DG+S I RAFY LLS K DG NAI GF N+L K +R E+ AV FD Sbjct: 3 LLVLDGNSIINRAFYGIRLLSTK-DGQYTNAIVGFLNILNK----ARDETAPDAVAVAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 PA TFR+ Y YKA R K+P+ L QLP+++ + G+P +E +GFEADDI+ T Y Sbjct: 58 LPAPTFRHLSYDGYKAGRKKMPDELASQLPVLKDLLRYMGLPILEAEGFEADDILGTEAY 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--TTCLYDTVKEEKI----DIEHVIKKWGIPPEKMV 180 K G A +++ D+D QLV P T L T + + D + + +G+ P +M+ Sbjct: 118 ACAKRGDACVLLTGDRDSFQLVGPSATVRLASTKAGQPVTTLYDEAAIRETYGVEPRQMI 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN-ASRIKQKKRRENILEYAET 239 ++AL GD+ DNIPG+ G+G KTA L++ YG L+ + + + R + E+ Sbjct: 178 DVKALMGDTSDNIPGVAGVGEKTALSLIRTYGTLDEVYAHLEDESIRPALRAKLRAGKES 237 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A +SRKL + TD P+ L + L + LE KL+ ++ T A Sbjct: 238 AYMSRKLAKISTDAPVETDPGALAGAKGDSHALALLMARLELFKLMEKMGVTGGAPAEAD 297 Query: 300 EP 301 P Sbjct: 298 AP 299 >gi|301066754|ref|YP_003788777.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus casei str. Zhang] gi|300439161|gb|ADK18927.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus casei str. Zhang] Length = 881 Score = 338 bits (866), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 193/496 (38%), Positives = 301/496 (60%), Gaps = 28/496 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAI 543 D++L SY+++ +S+D+ IA+ + R E + K K +P D ++ Sbjct: 399 DVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDIYGKGAKRQVP----EDDKLFGQFA 454 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 S+ + L L L + ++ ++ P+ V+++MEI GI ++ LK + E S Sbjct: 455 RKSDALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEIQGITLNAKTLKAMGTEFS 514 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 +++ LEE IY +G KFNL+SPKQLG+ILF KL P KTKTG + T+ L ++ Sbjct: 515 QSIKILEEKIYAEAGVKFNLNSPKQLGEILFEKLNLPVIKKTKTG-YSTSVDVLNELKSA 573 Query: 664 DNPIIKNILEWRQLSKIKSTYA-----DSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 +PI+++IL++R +K+ STY LP+H ++HT Y T TGRL+S++P Sbjct: 574 -SPIVQDILDYRGWAKLNSTYVVGLLKAQLPDH------KIHTRYLQTLTQTGRLSSVDP 626 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 N+QNIP + D G+ IR+AF+ S ++ S+DYSQIELR+L+HI+ + + F++ +DI Sbjct: 627 NMQNIPAR-DEGKIIRKAFVPSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDI 685 Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 H A +IFG++ ++V+P MRR AK NF I+YGIS + L+ + I R +A +I YF Sbjct: 686 HANTAMKIFGLSSPDQVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYF 745 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 ++P +H+Y++ R++GYVET+F RR + +I+S ++R ER A+N PIQGSA Sbjct: 746 DQYPKVHDYMDAMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSA 805 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI + K+L++ L KMLLQ+HDEL+FE PEEEI S+++ M+ A + Sbjct: 806 ADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIVQLSELVPKVMDSA----V 861 Query: 957 NLRVPLKVNIKVSNNW 972 +L VPLKV W Sbjct: 862 HLDVPLKVESHYGPTW 877 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/312 (34%), Positives = 164/312 (52%), Gaps = 11/312 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + L LVDG+S +RAF+A L R DGL NAI F NML +L+ + ++ Sbjct: 1 MASKTKLLLVDGNSVAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKAVQPDAA 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 V FD TFR Y DYK+ R K P LL QLP ++ GI E++ +EA Sbjct: 61 L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIAHYELKDYEA 116 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T A++ G+ TI++ D+DL QL + T + TVK E HV +K G Sbjct: 117 DDIIGTMAKRADEAGWETTIVTGDRDLTQLTTDRTTVQVTVKGVNELEAYTPAHVKEKLG 176 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P +++ L+ L GD+ DN PG+ +G KTA LL +YG++EN+ N +K+ K +EN+ Sbjct: 177 ITPAQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLNQYGSMENLYANVDDMKKSKLKENL 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 + + A LS++L + D P+T+ L + + +L F + L+ ++ + Sbjct: 237 INDKDNAFLSKQLATIDRDAPLTVDLADVTYAGPDLDKLRDFYTKMNMNSLLKKIGGSVA 296 Query: 294 CDAANIEPVVLD 305 + VLD Sbjct: 297 KPVQAVHFSVLD 308 >gi|317181153|dbj|BAJ58939.1| DNA polymerase I [Helicobacter pylori F32] Length = 893 Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 284/998 (28%), Positives = 470/998 (47%), Gaps = 140/998 (14%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E ++ ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTHIYSKDKDFNQLLSDKIALFDGKTE--FLVKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 +A LS++L L + ++ C P Sbjct: 237 DKGSAFLSKELATLEREC-----IKEFDFSSCAFP------------------------- 266 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 +EN + I+ E+ I S+L D E +P L + Sbjct: 267 -------------SENPLLKIKDELKEYGFI-----STLRDL------ENSPTPLISDNA 302 Query: 356 QKLSQYPINNDSYTK-----IVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAI 409 L P ++++ K + NT+ + +++KL+ + F +++ D K +A+ Sbjct: 303 PLLENAPASDNAPKKSCMIVLENTEPLSAFLEKLKKTNARIFMRLVLDK----EKKVLAL 358 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHN 468 A DQ S + E +F S+ Q++ FF+ +H IGH+ Sbjct: 359 AFLYEDQGYFLSLE-EALFSPFSLEFLQNA----------------FFKMLQHACIIGHD 401 Query: 469 IK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS-- 523 +K + Y + + +D +++++ + + D E+LK Sbjct: 402 LKPLLSFLKANYQVPLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYL 447 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK------LLHVYERLDKPMI 577 ++ IP +KI D + + A ++ + L+L L R EK LL + ++ P + Sbjct: 448 KEELIPHEKIKDFKTKSKAEKSEQLSLELNALKRLCEYFEKGGLEEGLLALAREVETPFV 507 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 V+ ME G +ID K++ E L LE I +L G FNL+SPKQL +IL+ KL Sbjct: 508 KVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKL 567 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 + P K+++ K+ + L++ +P I ILE+R+L+K+ +TY L + + Sbjct: 568 ELPKN-KSRSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDD 620 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELR 756 ++HT + T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR Sbjct: 621 KIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELR 680 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +LAH ++ L F DIH + +FG E ++ + R AK+INF ++YG+ + Sbjct: 681 LLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKK 737 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ L IP +EA YI+ YF RFP I +Y+ + K + + T+ GR +D Sbjct: 738 LSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGAN 796 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 I+ R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Sbjct: 797 DYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKN 855 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q I + P LRVPL+ + ++ W E Sbjct: 856 ALELQQEIQRILNDEVYP---LRVPLETSAFIAKRWNE 890 >gi|317499365|ref|ZP_07957633.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA] gi|316893334|gb|EFV15548.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA] Length = 879 Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 184/490 (37%), Positives = 301/490 (61%), Gaps = 11/490 (2%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIE 544 D+ L +Y+++ +S+++ IA+ + S +RKE++ + + +SD+ + E Sbjct: 396 DVSLAAYLVNPLKSTYEYDDIARDYKSMMLPSRKELIDKKHPMVTDGVLSDAGKKIMGYE 455 Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 + + + L KL +++ +Y ++ P + + ME+ GI +D LK+ ++ Sbjct: 456 -AYISREAIQPLSDKLTELEMMDLYREIEIPTMFALHDMEVRGIHVDSKALKEYGDQLVG 514 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664 + L+E+IY +GE+FN++SPKQLG +LF +K KTKTG + T+ + LE+I Sbjct: 515 RIEELQESIYKEAGEEFNINSPKQLGVVLFEHMKLEGAKKTKTG-YSTSVEVLEKIEHL- 572 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 PII +LE+RQL+K+KSTYAD L N I + QR+H ++ T TGR++S EPNLQNIP Sbjct: 573 YPIISMVLEYRQLTKLKSTYADGLANFI-QDDQRIHGKFNQTITATGRISSTEPNLQNIP 631 Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 I+ +LG+ IR+ F+ + ADYSQIELR+LAH+++ L +E + DIH A+E Sbjct: 632 IRMELGRAIRKVFLPEDGYVFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASE 691 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +FG+ +++V+ RR AK +NF IIYG+S F L+ L+I R +A +YI RYF +P + E Sbjct: 692 VFGIPMDEVTSTQRRDAKAVNFGIIYGLSAFGLSQDLKISRKQAQEYIDRYFAMYPRVKE 751 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 +++ + +GYV+T+F R E+ S RN ER A+N+PIQG+AADI + AM Sbjct: 752 FLDGEVEKGKTDGYVKTMFNRIRPIPELKSSNFMQRNFGERVAMNSPIQGTAADIIKIAM 811 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 + V+ L++ ++ +++LLQIHDEL+ E +E +I+ + M A ++LRVPL + Sbjct: 812 VRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFEEVKEILQNEMMNA----VSLRVPLNI 867 Query: 965 NIKVSNNWQE 974 +I+ +W E Sbjct: 868 DIEQGASWYE 877 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 106/288 (36%), Positives = 170/288 (59%), Gaps = 13/288 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S + RAFY P ++ GL NAI GF N+++K L+ E +H AV FD Sbjct: 5 LLLIDGNSILNRAFYGLPDMTNSQ-GLHTNAILGFLNIMFKFLE----EENPTHLAVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++++ DYK R +P+ L Q+P++R +A IP + +G+EADD++ T + Sbjct: 60 LKAPTFRHKMFADYKGTRKGMPDELQEQVPVIREVLKAMNIPLMMEEGYEADDLLGTMSV 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 + E+ GF V I+S D+DL+QL + P T TV E+ + + V++K+ + P++ Sbjct: 120 LGEQAGFEVKIVSGDRDLLQLATKKVQIRIPKTNRAGTVVEDYYE-DDVLEKYQVTPKEF 178 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DNIPGIPGIG KTA L++E+ ++EN + +K + + N+ EY + Sbjct: 179 IDVKALMGDASDNIPGIPGIGEKTATKLIKEFQSIENAYAHIDEVKPNRAKNNLQEYYDQ 238 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 +S++L ++ D PI I + L D LK LEF ++ R Sbjct: 239 GVMSKELATIKVDSPIDISFDDAKLGDLYTKEAYHMLKELEFKAILKR 286 >gi|307710073|ref|ZP_07646517.1| DNA polymerase I [Streptococcus mitis SK564] gi|307619053|gb|EFN98185.1| DNA polymerase I [Streptococcus mitis SK564] Length = 877 Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 204/515 (39%), Positives = 301/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++LHR+G+ ++ D L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKAKVLLHRFGVDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLIDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + EH ++++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKALP----EREKFLEHLARKLAILVETEPVLLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGITVKKETLLEMQAENDLVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ E V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERSEDVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 112/285 (39%), Positives = 153/285 (53%), Gaps = 11/285 (3%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSRKHD--GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DGSS +RAF+A L R + GL NAI GF ML LL+ SH V Sbjct: 6 LLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSHILV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDII T Sbjct: 62 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 +AE++GF +TI+S DKDL+QL T + + K E +++++K GI P + Sbjct: 122 LDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGITPTQF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD DNIPG+ IG KT LL E+G+LE I N +K K ++N++ E Sbjct: 182 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKDNLINDKEQ 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 A LS+ L + T PI I L+ L+ + L F + F +L Sbjct: 242 AFLSKTLATIDTKAPIEIGLKDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|34762572|ref|ZP_00143567.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 627 Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 199/510 (39%), Positives = 307/510 (60%), Gaps = 14/510 (2%) Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD-IASIAQKWLSYTRKE--ILKSRK 525 I Y+ VL GI+ + M+++Y L S ++ D I I + Y++ E K+ Sbjct: 126 ISYNFKVLLNLGINFKSMYMDMMIAYHLISSQTKIDPIIPITE----YSKLEPKDFKTAF 181 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 I I+ I+ ++ S IL ++ L L E L + + P+I V+S ME Sbjct: 182 GKINIELITAQDFSKYLSATSIGILAIYDELNYLLKKEDLYKILMENEMPLIQVLSLMER 241 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 GI+ID K S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL PSG KT Sbjct: 242 KGIEIDIQYFKNYSLELDKELLRIEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKT 301 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTG + T LE + I + +L++R+L+K+K+TY D+LP +++ + R+HT ++ Sbjct: 302 KTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTTFNQ 359 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 T TGRL+S +PNLQNIP+KTD G KIR F++ K L+S DYSQ+ELR+L ++K Sbjct: 360 IGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDE 419 Query: 766 PLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + + D+H + A IF + + E VS + R AK INFSIIYG +PF LA +L+IP Sbjct: 420 NLIEAYREEKDLHDLTARRIFNLSDTETVSREQRTIAKIINFSIIYGKTPFGLAKELKIP 479 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 +A++YIK+YF ++P + + + F ++GYV+T+FGR+ + I+S +I++ E Sbjct: 480 VKDASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAE 539 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R A+N IQG+AA++ ++ M+ V+ L+D + T +LLQ+HDEL+FEV E + S+I+ Sbjct: 540 RMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIT-LLLQVHDELIFEVEENSVEKYSEIL 598 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ + V L +NI + NW E Sbjct: 599 ADIMKNTVQLE---DVKLNININIGKNWAE 625 >gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus] gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus] Length = 886 Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 199/515 (38%), Positives = 310/515 (60%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEIL-- 521 ++ K K++L G+ + D L +Y+L S +++A++A+ + + E++ Sbjct: 380 YDFKRSKVLLSHLGLDLPAASYDARLANYLL-STVEDNEMATLARLYTTIPLDTDEVVYG 438 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P DK + + H V+L ++ KL + +Y ++ P+ +V++ Sbjct: 439 KGVKRAVP-DK---AVLLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELPLANVLA 494 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI ++QD L++++ + + L + IY+++GE FN++SPKQLG ILF K++ P Sbjct: 495 KMEIEGIAVNQDSLQEMAEQNKVVIEELTQEIYEMAGEVFNINSPKQLGVILFEKMQLPL 554 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ++K++STY L ++I R+HT Sbjct: 555 HLTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-MADGRIHT 613 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAH Sbjct: 614 RYLQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAH 673 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F+ DIH A +FG+ E V+ RR+AK +NF I+YGIS F L+ Sbjct: 674 ISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDFGLSN 733 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L IPR +A YI YF R+PGI +Y+E+ + GYVET+F RR +INS + ++ Sbjct: 734 NLGIPRKQAKAYIDTYFERYPGIKDYMERVVREAKDKGYVETLFKRRRQLPDINSRQFNV 793 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ ++L TKMLLQ+HDE+V EVP E+ Sbjct: 794 RSFAERTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPNHELAA 853 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A +NL VPL+V+ +W E Sbjct: 854 VKELVKETMESA----VNLAVPLRVDESAGKSWYE 884 Score = 194 bits (493), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 117/301 (38%), Positives = 166/301 (55%), Gaps = 17/301 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ + Sbjct: 7 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 62 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E++ DYKA R K P+ Q P +R A GI E++ + Sbjct: 63 --PTHVLVAFDAGKTTFRTELFADYKAGRAKTPDEFREQFPYIRDMLGALGIAFYELEHY 120 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 121 EADDIIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDANTVVEISKKGVAEFEEFTPAYLM 180 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 K G+ PE+ + L+AL GD DNIPG+ IG KT LL EYG+LE I + K K Sbjct: 181 DKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEYGSLEGIYQHVDSFKPSKM 240 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 +EN+L E A LS+ L + T PI I LE ++ + + RL F ++F +L N +A Sbjct: 241 KENLLHDKEQAFLSKTLATINTSAPIAIGLEDIVYQGPDLDRLSQFYDEMDFVQLKNALA 300 Query: 290 T 290 + Sbjct: 301 S 301 >gi|222151604|ref|YP_002560760.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402] gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402] Length = 875 Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 197/524 (37%), Positives = 300/524 (57%), Gaps = 15/524 (2%) Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFED-IMLMSYVLDSGRSSHDIASIAQ-KWLS 514 +NE K ++ K K++ R I ++G E +ML SY+LD D+A AQ + + Sbjct: 359 LQNEDTKKYVYDAKETKVLFSRLDIDIKGIEHCVMLASYLLDPALKIIDVAQSAQMQGIY 418 Query: 515 YTRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 Y + + K K IP + + +H N I ++ L KL K L + Sbjct: 419 YVESDEMIFGKGAKMHIP----ERTNLFKHIASEVNAIHEVSALQIRKLNELKQLELLTA 474 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 L+ P+ V++ ME+ GI++++ L+++ EI L L I++ +G FN++SPKQLG Sbjct: 475 LELPLSLVLADMEMQGIKVNRQTLQEMQQEIQSRLDELITRIHEHAGSTFNINSPKQLGV 534 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 +LF LK S K KT +TA D+ + G +PII++IL +R LSK++STY + L Sbjct: 535 VLFEDLKLDSPKKKKTKTGYSTAVDVLESLAGKHPIIEDILLYRTLSKLQSTYVEGLQKL 594 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750 I ++HT ++ TGRL+S++PNLQNIP++ D G+KIR+AF+ S P + +ADY Sbjct: 595 IGD-DDKIHTRFNQVIAQTGRLSSIDPNLQNIPVRLDEGRKIRKAFVPSEPNSVIFAADY 653 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELR+LAHI + + F +DIH A ++F V E+V+ MRR AK +NF I+Y Sbjct: 654 SQIELRVLAHITGDKGMLEAFNQGIDIHTKTAMKVFNVEREEVTSDMRRQAKAVNFGIVY 713 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 GIS + L+ L I R +A +I Y FP + Y+ +Q GYV T+ RR + Sbjct: 714 GISDYGLSQSLGITRKDAQAFIDNYLESFPDVKAYMHDIIQEAKQQGYVTTLLNRRRYIP 773 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 +I S ++R ER A+N PIQGSAADI + AM+ ++ +++ K+LLQ+HDEL+F Sbjct: 774 DITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVHYNEQVKETDFKAKLLLQVHDELIF 833 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EVP++E+ S + H ME A + L+VPL+V +W E Sbjct: 834 EVPKDELEAFSLFVKHVMENA----LELKVPLEVEYDSGESWYE 873 Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/321 (38%), Positives = 173/321 (53%), Gaps = 14/321 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG+S +RAFYA PLL + L NAI GF +L KL+ KE +HF + Sbjct: 3 DKLILIDGNSIAFRAFYALPLL-KNQSNLHTNAIYGFTLILDKLI----KEEQPTHFLIA 57 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E+Y DYK R K P L Q P +R +A+ I E +EADDII T Sbjct: 58 FDAGKTTFRHEMYKDYKGGRQKTPSELSEQFPYIRKLAEAYQIKHYEQDMYEADDIIGTL 117 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 A + I++ D+DL QL S +Y T K +K + + +++G PEK++ Sbjct: 118 AKQATENKLETIIVTGDRDLTQLASDYVTIYYTKKGVTDIDKYTPQFIQEQYGFEPEKII 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+ L GD DNIPG+PG+G KTA LL EYG +E +L N IK KK EN+ + + A Sbjct: 178 DLKGLMGDKSDNIPGVPGVGEKTALKLLHEYGTVEAVLDNLEHIKGKKLNENLTNHKDDA 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAANI 299 +S++L + TD PI + L +L + + + I+ + L+F KL N A T + I Sbjct: 238 LMSKQLAKINTDAPIAVNLNDTLLPEKDESKKIALFQELDFKQKLDNIDAETQVTEKKTI 297 Query: 300 EPV----VLDINTTENKGIAI 316 E D +T E+ I I Sbjct: 298 EISNQFHTFDFSTIESMAIRI 318 >gi|308183570|ref|YP_003927697.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4] gi|308065755|gb|ADO07647.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4] Length = 893 Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 284/996 (28%), Positives = 473/996 (47%), Gaps = 136/996 (13%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSTKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVSGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E ++ ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLVKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 +A LS++L L ++ C P Sbjct: 237 DKGSAFLSKELATLERGC-----IKEFDFLSCAFP------------------------- 266 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 +EN + I+ E+ I S+L D E +P L L+ Sbjct: 267 -------------SENPLLKIKDELKEYGFI-----STLRDL------ENSPTPLILDNT 302 Query: 356 QKLSQYPINNDSYTK-----IVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAI 409 L P ++++ K + NT+ + ++++LE + F +++ D K +A+ Sbjct: 303 PLLENTPASDNAPKKSCMIVLENTEPLSAFLERLENSNARVFMRLVLDK----EKKVLAL 358 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHN 468 A DQ + E +F S+ Q++ FF+ +H IGH+ Sbjct: 359 AFLFEDQGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHD 401 Query: 469 IK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 +K + +Y +S+ +D +++++ + + D + +++L ++ Sbjct: 402 LKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--GVLKEYL----------KE 449 Query: 526 SSIPIDKISD----SQVQ--EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 IP +KI D S+V+ E N + +L + E LL + ++ P + V Sbjct: 450 ELIPHEKIKDFKTKSKVEKLEQLDMELNALKRLCEYFEKGGLEEGLLALAREVETPFMKV 509 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 + ME G +ID K++ E L LE I DL G FNL+SPKQL +IL+ KL+ Sbjct: 510 LMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLEL 569 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 P K+++ K+ + L++ +P I ILE+R+L+K+ +TY L + + ++ Sbjct: 570 PQN-KSRSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKI 622 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRIL 758 HT + T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+L Sbjct: 623 HTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 682 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH ++ L + F DIH + +FG E ++ + R AK+INF ++YG+ +L+ Sbjct: 683 AHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGSKKLS 739 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 L IP +EA YI+ YF RFP I +Y+ + K + + T+ GR +D + + Sbjct: 740 ETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFVGA-NDH 798 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 I+ R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Sbjct: 799 IKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAP 857 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q I + P LRVPL+ + V+ W E Sbjct: 858 ELQQEIQRILNDEVYP---LRVPLETSAFVAKRWNE 890 >gi|261838745|gb|ACX98511.1| DNA polymerase I [Helicobacter pylori 51] Length = 885 Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 287/992 (28%), Positives = 463/992 (46%), Gaps = 134/992 (13%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 5 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 61 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 62 IVFAL--ESQTKTKRAEKLGQYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 119 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 120 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 174 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 175 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E+A LS++L L ++ C P LK + K ++T D + Sbjct: 235 DKESAFLSKELATLERGC-----IKEFDFSSCTFPSENPLLKIKDELKEYGFISTLRDLE 289 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 + P++LD N + D+T K S L + T P FLE+L Sbjct: 290 NSPT-PLILD-----NAPLL-------DSTPKKSCMIVLENTT--------PLSAFLEKL 328 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +K N + ++V K+ K +A+A D Sbjct: 329 KK-----TNARIFMRLVLDKE---------------------------KKVLALAFLYED 356 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YDK 473 Q + E +F S+ Q++ FF+ +H IGH++K Sbjct: 357 QGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHDLKPLLS 399 Query: 474 LVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIP 529 + +Y +S+ +D +++++ + + D E+LK ++ IP Sbjct: 400 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLKEEWIP 445 Query: 530 IDKISDSQVQEHAIE------NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 +KI D + + A + N + +L + E LL + ++ P + V+ M Sbjct: 446 HEKIKDFKTKSKAGKLEQLDRELNALRRLCEYFEKGGLEEGLLALAREVETPFMKVLMGM 505 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E G +ID K++ E L LE I +L G FNL+SPKQL +IL+ KL+ P Sbjct: 506 EFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGADFNLNSPKQLSEILYEKLELPKN- 564 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 K+ + K+ + L++ +P I ILE+R+L+K+ +TY L + + ++HT + Sbjct: 565 KSHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTF 618 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIA 762 T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+LAH + Sbjct: 619 IQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFS 678 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L F DIH + +FG E ++ + R AK+INF ++YG+ +L+ L Sbjct: 679 QDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLN 735 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IP SEA YI+ YF RFP I +Y+ + K + + T+ GR +D I+ Sbjct: 736 IPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDYIKGN 794 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Q Sbjct: 795 YLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPELQQ 853 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I + P LRVPL+ + ++ W E Sbjct: 854 EIQRILNDEVYP---LRVPLETSAFIAKRWNE 882 >gi|288906293|ref|YP_003431515.1| DNA polymerase I [Streptococcus gallolyticus UCN34] gi|325979307|ref|YP_004289023.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733019|emb|CBI14600.1| DNA polymerase I [Streptococcus gallolyticus UCN34] gi|325179235|emb|CBZ49279.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 878 Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 176/406 (43%), Positives = 261/406 (64%), Gaps = 9/406 (2%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 +++P+ +V+++MEI GI + + L+++ A + L + IYDL+G +FN++SPKQLG+ Sbjct: 477 MEQPLANVLAKMEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEFNINSPKQLGE 536 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 +LF K++ P+ KT +TA D+ + +PI+ ILE+RQ++K++STY L + Sbjct: 537 LLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDF 596 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749 I + ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T+ L+S+D Sbjct: 597 I-LQDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PETEDEVLLSSD 654 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSI 808 YSQIELR+LAHI+ L F DIH A +FG+ E V+P RR+AK +NF I Sbjct: 655 YSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTPNDRRNAKAVNFGI 714 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS + LA L IPR A YI+ YF R+PGI Y+E+ + GYVET+F RR Sbjct: 715 VYGISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVETLFHRRRE 774 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS +IR ER AIN+PIQGSAADI + AMI++ K+L D + TKMLLQ+HDE+ Sbjct: 775 LPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDKALVDGQFKTKMLLQVHDEI 834 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + +VP++E+ ++ +ME A I+L VPL + W E Sbjct: 835 ILQVPKDELEAVKTLVKETMESA----IDLSVPLIADENAGQTWYE 876 Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 118/326 (36%), Positives = 174/326 (53%), Gaps = 23/326 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+ + L L+DGSS YRAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MENKKKLLLIDGSSVAYRAFFA---LYNQIDRFKNRAGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R A GI +++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYKDYKAGRAKTPDEFREQLPYIREMLSALGITFYDLEN 113 Query: 115 FEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 +EADDII T +AE E + VTI+S DKDL+QL T + + K E+ +++ Sbjct: 114 YEADDIIGTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLM 173 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P++ + L+AL GD DNIPG+ IG KT LL EYG+LE + N +K+ K Sbjct: 174 EKMGITPKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEYGSLEGVYENIDGMKKSKM 233 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 +EN++ E A LS+ L + PITI L+ + + + +L+ F + F + + + Sbjct: 234 KENLINDKEQAFLSKTLATINISAPITIGLDDINYQGPDLDKLVPFYDEMGFKQFKDNLG 293 Query: 290 T-----TYDCDAANIEPVVLDINTTE 310 +D A ++ + D+ T + Sbjct: 294 APKKQEKFDVSYAEVDSLSADMFTDD 319 >gi|322375177|ref|ZP_08049691.1| DNA polymerase I [Streptococcus sp. C300] gi|321280677|gb|EFX57716.1| DNA polymerase I [Streptococcus sp. C300] Length = 889 Score = 337 bits (864), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 211/529 (39%), Positives = 312/529 (58%), Gaps = 19/529 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509 LK+F E LK+ ++ K K++L+R ++++ D L Y+L S +++I++IA Sbjct: 371 LKEFLEKTP-LKV-YDFKKAKVLLNRLDLNLQAPAFDSRLAKYLL-STVENNEISTIANL 427 Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 Q +L+ K K +IP + EH V+++ +L KL L Sbjct: 428 YGQTYLADDEIFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLLEKLSEHGQLD 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + +++P+ V+++MEI GI++ ++ L ++ AE + L + IY+L+GEKFN++SPK Sbjct: 484 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENELIIEKLTQEIYELAGEKFNINSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF KL P KT +TA D+ + PI+K IL++RQ++KI+STY Sbjct: 544 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIG 603 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746 L + I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+ Sbjct: 604 LQDWI-LDDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 662 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S+DYSQIELR+LAHI+K L + F+ DIH A +FG+ E V+P RR+AK +N Sbjct: 663 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 722 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F ++YGIS F L+ L I R EA YI YF RFPGI Y+++ R GYVET+F R Sbjct: 723 FGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKR 782 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R +INS +IR ER AIN+PIQGSAADI + AMI + K+L + TKMLLQ+H Sbjct: 783 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 842 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DE+V EVP+ E+ ++ +ME+A I L VPL + W E Sbjct: 843 DEIVLEVPKSELAAIKVLVKQTMEEA----IQLSVPLIADENEGATWYE 887 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 113/285 (39%), Positives = 153/285 (53%), Gaps = 11/285 (3%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DGSS +RAF+A L R +GL NAI GF ML +L+ SH V Sbjct: 18 LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PSHVLV 73 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDII T Sbjct: 74 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADDIIGT 133 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 +AEK+ F VTI+S DKDL+QL T + + K E +++++K GI P + Sbjct: 134 LGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGITPAQF 193 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD DNIPG+ IG KT LL E+G+LE I N +K K +EN++ E Sbjct: 194 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLINDKEQ 253 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 A LS+ L + T+ PI I L+ L+ + L F + F +L Sbjct: 254 AFLSKTLATIETNAPIEIGLDDLLYSGSDVENLGKFYDEMGFKQL 298 >gi|307704639|ref|ZP_07641540.1| DNA polymerase I [Streptococcus mitis SK597] gi|307621792|gb|EFO00828.1| DNA polymerase I [Streptococcus mitis SK597] Length = 877 Score = 337 bits (864), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 204/515 (39%), Positives = 301/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++LHR G+ ++ D L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKAKVLLHRLGVDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + EH +V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKALP----EREKFLEHLARKLSVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ E + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGITVKKETLLEMQTENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ E V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L + TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 114/288 (39%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E +++++K GI P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGITP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ IG KT LL E+G+LE I N +K K +EN++ Sbjct: 179 TQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIEIGLEDLVYSGPDIENLGKFYDEMGFKQL 286 >gi|306834469|ref|ZP_07467582.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338] gi|304423271|gb|EFM26424.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338] Length = 878 Score = 337 bits (863), Expect = 7e-90, Method: Compositional matrix adjust. Identities = 176/406 (43%), Positives = 261/406 (64%), Gaps = 9/406 (2%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 +++P+ +V+++MEI GI + + L+++ A + L + IYDL+G +FN++SPKQLG+ Sbjct: 477 MEQPLANVLAKMEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEFNINSPKQLGE 536 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 +LF K++ P+ KT +TA D+ + +PI+ ILE+RQ++K++STY L + Sbjct: 537 LLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDF 596 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749 I + ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T+ L+S+D Sbjct: 597 I-LQDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PETEDEVLLSSD 654 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSI 808 YSQIELR+LAHI+ L F DIH A +FG+ E V+P RR+AK +NF I Sbjct: 655 YSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTPNDRRNAKAVNFGI 714 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS + LA L IPR A YI+ YF R+PGI Y+E+ + GYVET+F RR Sbjct: 715 VYGISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVETLFHRRRE 774 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS +IR ER AIN+PIQGSAADI + AMI++ K+L D + TKMLLQ+HDE+ Sbjct: 775 LPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDKALVDGQFKTKMLLQVHDEI 834 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + +VP++E+ ++ +ME A I+L VPL + W E Sbjct: 835 ILQVPKDELEAVKTLVKETMESA----IDLSVPLIADENAGQTWYE 876 Score = 184 bits (468), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 117/298 (39%), Positives = 163/298 (54%), Gaps = 24/298 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+ + L L+DGSS YRAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MENKKKLLLIDGSSVAYRAFFA---LYNQIDRFKNRAGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R A GI +++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYKDYKAGRAKTPDEFREQLPYIREMLSALGITFYDLEN 113 Query: 115 FEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 +EADDII T +AE E + VTI+S DKDL+QL T + + K E+ +++ Sbjct: 114 YEADDIIGTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLM 173 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P++ + L+AL GD DNIPG+ IG KT LL EYG+LE + N +K+ K Sbjct: 174 EKIGITPKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEYGSLEGVYENIDGMKKSKM 233 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKL 284 +EN++ E A LS+ L + PITI L+ + D GP +L+ F + F + Sbjct: 234 KENLINDKEQAFLSKTLATINISAPITIGLDDI---DYQGPDLDKLVPFYDEMGFKQF 288 >gi|325680927|ref|ZP_08160464.1| DNA-directed DNA polymerase [Ruminococcus albus 8] gi|324107391|gb|EGC01670.1| DNA-directed DNA polymerase [Ruminococcus albus 8] Length = 857 Score = 337 bits (863), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 165/424 (38%), Positives = 268/424 (63%), Gaps = 7/424 (1%) Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608 I+ L L+ +L ++L ++ ++ P+ +V++ ME G++ D D +++ + K++ + Sbjct: 436 IMPLAENLKLRLEQTEMLKLFNEVEMPLCEVLASMEHYGVRADTDGIREFGKGLKKDIEA 495 Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668 L IYDL+G +FN++SPKQLG++LF KL P+ KTK+G + T A+ LE++ +PI+ Sbjct: 496 LTSQIYDLAGGEFNIASPKQLGEVLFEKLGLPAKKKTKSG-YSTNAEVLEEL-ADKHPIV 553 Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728 +LE+R L+K+ STY DSL + + RV + + T TGR++S EPN+QNIP++ + Sbjct: 554 GLVLEYRTLTKLNSTYVDSLLKEV-EADGRVRSVFKQTETRTGRISSTEPNMQNIPVRKE 612 Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 +G+ +R+ F++ + ADYSQIELR+LA + + + F + DIH M A+++FG+ Sbjct: 613 IGRNMRKFFVAGDGYTFLDADYSQIELRVLAEVCGDENMRKTFADGTDIHTMTASQVFGI 672 Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848 + V P+MR AK +NF IIYGI F L+ + + EA YIK Y FP + E+++K Sbjct: 673 PADAVLPEMRSAAKAVNFGIIYGIGAFSLSKDIGVSVKEAKQYIKNYLDNFPKVSEFMDK 732 Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908 T +NGYV TIFGRR + E+ + ++ +RAA+NAPIQG+AADI + AM+ V+ Sbjct: 733 TVEDGIKNGYVTTIFGRRRYIPELAATNKVMQAFGKRAAMNAPIQGAAADIIKMAMVKVY 792 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 K L+ KL +++LQ+HDEL+ EV ++ A I+ MEKA +N VP++V++ Sbjct: 793 KRLKAEKLDARLILQVHDELIIEVTPDDKEKAKAILKEEMEKA----VNFTVPMEVSVGE 848 Query: 969 SNNW 972 +W Sbjct: 849 GESW 852 Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 125/214 (58%), Gaps = 7/214 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +DG+S + RAFY LL+ G+P NAI GF N+ K L+ + + +A V F Sbjct: 2 RLLCIDGNSIMNRAFYGIRLLTNSK-GIPTNAITGFMNIYMKELEEVQPDCVA----VAF 56 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR++ YKANR +P+ L Q+PL++ GI +E +G+EADDI+ T + Sbjct: 57 DLRAPTFRHKASAAYKANRKGMPDELAQQMPLIKQLLGLLGIKTVECEGYEADDILGTLS 116 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDI-EHVIKKWGIPPEKMVCLQ 183 A G I++ D+D QLVS T KE KI +++++G+ P +M+ ++ Sbjct: 117 KAAADSGNECFILTGDRDSFQLVSDKVTVRLAGTKETKIYTPARIMEEYGVTPRQMIEVK 176 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217 AL GD+ DNI G+ GIG KTA L+Q+ G++E + Sbjct: 177 ALMGDTSDNISGVKGIGEKTALNLIQQAGSVEAL 210 >gi|307706914|ref|ZP_07643715.1| DNA polymerase I [Streptococcus mitis SK321] gi|307617706|gb|EFN96872.1| DNA polymerase I [Streptococcus mitis SK321] Length = 877 Score = 337 bits (863), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 301/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L+ +G+ ++ D L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKAKVLLNHFGVDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLARKLAVLIETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGITVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ E V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKTYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+T Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELTE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 184 bits (467), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 114/288 (39%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNATGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E E++++K GI P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPEYLMEKMGITP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ IG KT LL E+G+LE I N +K K +EN++ Sbjct: 179 TQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I L+ L+ + L F + F +L Sbjct: 239 REQAFLSKTLATIDTKAPIEIGLQDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 899 Score = 337 bits (863), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 199/515 (38%), Positives = 309/515 (60%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEIL-- 521 ++ K K++L G+ + D L +Y+L S +++A++A+ + + E++ Sbjct: 393 YDFKRSKVLLSHLGLDLPAASYDARLANYLL-STVEDNEMATLARLYTTIPLDTDEVVYG 451 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P DK + + H V+L ++ KL + +Y ++ P+ +V++ Sbjct: 452 KGVKRAVP-DK---AVLLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELPLANVLA 507 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI ++QD L++++ + + L + IY+++GE FN++SPKQLG ILF K++ P Sbjct: 508 KMEIEGIAVNQDSLQEMAEQNKVVIEELTQEIYEMAGEVFNINSPKQLGVILFEKMQLPL 567 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ++K++STY L ++I R+HT Sbjct: 568 HLTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMA-DGRIHT 626 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAH Sbjct: 627 RYLQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAH 686 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F+ DIH A +FG+ E V+ RR+AK +NF I+YGIS F L+ Sbjct: 687 ISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDFGLSN 746 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L IPR +A YI YF R+PGI Y+E+ + GYVET+F RR +INS + ++ Sbjct: 747 NLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETLFKRRRQLPDINSRQFNL 806 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ ++L TKMLLQ+HDE+V EVP E+ Sbjct: 807 RSFAERTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPSHELAA 866 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A +NL VPL+V+ +W E Sbjct: 867 VKELVKETMESA----VNLAVPLRVDESAGKSWYE 897 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 167/301 (55%), Gaps = 17/301 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ + Sbjct: 20 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 75 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E++ DYKA R K P+ Q P +R A GI E++ + Sbjct: 76 --PTHVLVAFDAGKTTFRTELFADYKAGRAKTPDEFREQFPYIRDMLGALGIAFYELEHY 133 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 134 EADDIIGTLDKMAERTELPFDVTIVSGDKDLIQLTDANTVVEISKKGVAEFEEFTPAYLM 193 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 K G+ PE+ + L+AL GD DNIPG+ IG KT LL EYG+LE I + K K Sbjct: 194 DKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEYGSLEGIYQHVDSFKPSKM 253 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 +EN+L E A LS+ L + T PITI LE ++ + + RL F ++F +L N +A Sbjct: 254 KENLLHDKEQAFLSKTLATINTSAPITIGLEDIVYQGPDLDRLSQFYDEMDFVQLKNALA 313 Query: 290 T 290 + Sbjct: 314 S 314 >gi|188528242|ref|YP_001910929.1| DNA polymerase I (polA) [Helicobacter pylori Shi470] gi|188144482|gb|ACD48899.1| DNA polymerase I (polA) [Helicobacter pylori Shi470] Length = 893 Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 281/992 (28%), Positives = 470/992 (47%), Gaps = 128/992 (12%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAERLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E+A LS++L L+ ++ C P Sbjct: 237 DKESAFLSKELATLQRGC-----IKEFDFLSCAFP------------------------- 266 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 +EN + I+ E+ I S+L D E +P L L+ Sbjct: 267 -------------SENPLLKIKDELKEYGFI-----STLRDL------ENSPTPLILDNT 302 Query: 356 QKLSQYPINNDSYTK-----IVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAI 409 L P+ +++ K + NT + +++KLE + F +++ D K +A+ Sbjct: 303 PLLENAPLLDNAPKKSCMIVLENTAPLSAFLEKLENSNARIFMRLVLDK----EKKVLAL 358 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHN 468 A DQ + E +F S+ Q++ FF+ +H IGH+ Sbjct: 359 AFLYEDQGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHD 401 Query: 469 IK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKS 523 +K + +Y +S+ +D +++++ + + D + +++L E +K Sbjct: 402 LKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--EVVREYLKEELIPHETIKD 459 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 K+ ++K+ ++ +A++ +L + E LL + ++ P + V+ M Sbjct: 460 FKTKSRVEKLEQLDMELNALK------RLCEYFEKGGLEEGLLALAREVETPFMKVLMGM 513 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E G +ID K++ E L LE I DL G FNL+SPKQL +IL+ KL+ P Sbjct: 514 EFQGFKIDAPYFKRLEQEFKDELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQN- 572 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 K+++ K+ + L++ +P I ILE+R+L+K+ +TY L + + ++HT + Sbjct: 573 KSRSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTF 626 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIA 762 T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+LAH + Sbjct: 627 IQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFS 686 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L F DIH + +FG E ++ + R AK+INF ++YG+ +L+ L Sbjct: 687 QDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLN 743 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IP +EA YI+ YF RFP I +Y+ + K + + T+ GR +D I+ Sbjct: 744 IPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDHIKGN 802 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Q Sbjct: 803 YLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPELQQ 861 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I + P LRVPL+ + ++ W E Sbjct: 862 EIQRILNDEVYP---LRVPLETSAFMAKRWNE 890 >gi|320547600|ref|ZP_08041885.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812] gi|320447675|gb|EFW88433.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812] Length = 878 Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 175/406 (43%), Positives = 262/406 (64%), Gaps = 9/406 (2%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 +++P+ +V+++MEI GI + ++ L+++ + +L + IYDL+G +FN++SPKQLG+ Sbjct: 477 MEQPLANVLAKMEIAGISVKKETLQEMEKANQAAIDNLTQEIYDLAGMEFNINSPKQLGE 536 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 +LF K++ P+ KT +TA D+ + +PI+ ILE+RQ++K++STY L + Sbjct: 537 LLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDF 596 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749 I K ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T L+S+D Sbjct: 597 ILK-DGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PETADEVLLSSD 654 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSI 808 YSQIELR+LAHI+ L F DIH A +FG+ E V+P RR+AK +NF I Sbjct: 655 YSQIELRVLAHISNDEHLIAAFNEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGI 714 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS + LA L IPR A YI+ YF R+PGI +Y+E+ + GYVET+F RR Sbjct: 715 VYGISDYGLANNLGIPRKVAKQYIETYFERYPGIKDYMERVVRDAKDKGYVETLFHRRRE 774 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +IN+ ++R ER AIN+PIQGSAADI + AMI++ K+L + K TKMLLQ+HDE+ Sbjct: 775 LPDINARNFNVRQFAERTAINSPIQGSAADILKIAMINLDKALVEGKFKTKMLLQVHDEI 834 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + EVP++E+ +++ +ME A I L VPL + W E Sbjct: 835 ILEVPKDELEAIEKLVKETMESA----IELSVPLVADESAGQTWYE 876 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 163/302 (53%), Gaps = 18/302 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+ + L L+DGSS YRAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MENKKKLLLIDGSSVAYRAFFA---LYNQIDRFKNRAGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R GI E++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYKDYKAGRAKTPDEFREQLPYIREMLTVLGISWYELEN 113 Query: 115 FEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 +EADDII T +AE E + VTI+S DKDL+QL T + + K E+ +++ Sbjct: 114 YEADDIIGTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLM 173 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P++ + L+AL GD DNIPG+ +G KT LL EYG+LE + N +K+ K Sbjct: 174 EKMGITPKQFIDLKALMGDKSDNIPGVTKVGEKTGLKLLLEYGSLEGVYENIDGMKKSKM 233 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 +EN++ E A LS+ L + PITI L+ + + + +L+ F + F + + + Sbjct: 234 KENLINDKEQAFLSKTLATINITAPITIGLDDINYQGPDLDKLVPFYDEMGFKQFKDNLG 293 Query: 290 TT 291 Sbjct: 294 AA 295 >gi|307707929|ref|ZP_07644404.1| DNA polymerase I [Streptococcus mitis NCTC 12261] gi|307615994|gb|EFN95192.1| DNA polymerase I [Streptococcus mitis NCTC 12261] Length = 877 Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 205/517 (39%), Positives = 305/517 (58%), Gaps = 21/517 (4%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L+R+G+ ++ D L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKAKVLLNRFGVDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLARKIAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI++ ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL+ P Sbjct: 486 KMEIAGIKVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLELPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRIL 758 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ P ++ L+S+DYSQIELR+L Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV--PEREDSVLLSSDYSQIELRVL 662 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRL 817 AHI+K L + F+ DIH A +FG+ E V+ RR+AK +NF ++YGIS F L Sbjct: 663 AHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGL 722 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 + L I R A YI YF RFPGI Y+++ R GYVET+F RR +INS Sbjct: 723 SNNLGISRKGAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNF 782 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 +IR ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 783 NIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSEL 842 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 843 AEMKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 116/288 (40%), Positives = 155/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE+ GF +TIIS DKDL+QL T + + K E E++++K GI P Sbjct: 119 IGTLDKLAEQNGFDITIISGDKDLIQLTDEHTVVELSKKGVAEFEAFTPEYLMEKMGITP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ IG KT LL E+G+LE I N +K K +EN++ Sbjct: 179 TQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+KL + T+ P+ I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKKLATIDTEAPVEIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|171777578|ref|ZP_02919266.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283187|gb|EDT48611.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 884 Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 175/406 (43%), Positives = 260/406 (64%), Gaps = 9/406 (2%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 +++P+ +V+++MEI GI + ++ L+ + + L + IYDL+G +FN++SPKQLG+ Sbjct: 483 MEQPLANVLAKMEIAGISVKKETLQDMEKANQAVIDELTQEIYDLAGMEFNINSPKQLGE 542 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 +LF K++ P+ KT +TA D+ + +PI+ ILE+RQ++K++STY L + Sbjct: 543 LLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDF 602 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749 I K ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T L+S+D Sbjct: 603 ILK-DGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PETADEVLLSSD 660 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSI 808 YSQIELR+LAHI+ L F DIH A +FG+ E V+P RR+AK +NF I Sbjct: 661 YSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGI 720 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS + LA L IPR A YI+ YF R+PGI +Y+E+ + GYVET+F RR Sbjct: 721 VYGISDYGLANNLGIPRKVAKQYIETYFERYPGIKDYMERVVRDAKDKGYVETLFHRRRE 780 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +IN+ ++R ER AIN+PIQGSAADI + AMI++ K+L D + TKMLLQ+HDE+ Sbjct: 781 LPDINARNFNVRQFAERTAINSPIQGSAADILKIAMINLDKALVDGRFKTKMLLQVHDEI 840 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + EVP++E+ +++ +ME A I L VPL + W E Sbjct: 841 ILEVPKDELEAIEKLVKETMESA----IELSVPLVADESAGQTWYE 882 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 114/302 (37%), Positives = 163/302 (53%), Gaps = 18/302 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+ + L L+DGSS YRAF+A L + D GL NAI GF ML LL+ + Sbjct: 7 MENKKKLLLIDGSSVAYRAFFA---LYNQIDRFKNRAGLHTNAIYGFHLMLNHLLERIQ- 62 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R A GI E++ Sbjct: 63 ---PTHVLVAFDAGKTTFRTEMYKDYKAGRAKTPDEFREQLPYIREMLTALGIKWYELEN 119 Query: 115 FEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 +EADDII T +AE E + VTI+S DKDL+QL T + + K E+ +++ Sbjct: 120 YEADDIIGTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLM 179 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P++ + L+AL GD DNIPG+ +G KT LL EYG+LE + N +K+ K Sbjct: 180 EKMGITPKQFIDLKALMGDKSDNIPGVTKVGEKTGLKLLLEYGSLEGVYENIDGMKKSKM 239 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 +EN++ E A LS+ L + PI I L+ + + +L+ F + F + + + Sbjct: 240 KENLINDKEQAFLSKTLATINITAPIAIGLDDINYSRPDLEKLVPFYDEMGFKQFKDNLG 299 Query: 290 TT 291 T Sbjct: 300 AT 301 >gi|306832348|ref|ZP_07465502.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425787|gb|EFM28905.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 878 Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 176/406 (43%), Positives = 260/406 (64%), Gaps = 9/406 (2%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 +++P+ +V+++MEI GI + + L+++ A + L + IYDL+G +FN++SPKQLG+ Sbjct: 477 MEQPLANVLAKMEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEFNINSPKQLGE 536 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 +LF K++ P+ KT +TA D+ + +PI+ ILE+RQ++K++STY L + Sbjct: 537 LLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDF 596 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749 I + ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T+ L+S+D Sbjct: 597 I-LQDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PETEDEVLLSSD 654 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSI 808 YSQIELR+LAHI+ L F DIH A +FG+ E V+P RR+AK +NF I Sbjct: 655 YSQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTPNDRRNAKAVNFGI 714 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS + LA L IPR A YI+ YF R+PGI Y+E+ + GYVET+F RR Sbjct: 715 VYGISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVETLFHRRRE 774 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS +IR ER AIN+PIQGSAADI + AMI++ K+L D + TKMLLQ+HDE+ Sbjct: 775 LPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDKALVDGQFKTKMLLQVHDEI 834 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + +VP+ E+ ++ +ME A I+L VPL + W E Sbjct: 835 ILQVPKNELEAVKTLVKETMESA----IDLSVPLIADENAGQTWYE 876 Score = 187 bits (474), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 118/326 (36%), Positives = 174/326 (53%), Gaps = 23/326 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M+ + L L+DGSS YRAF+A L + D GL NAI GF ML LL+ + Sbjct: 1 MENKKKLLLIDGSSVAYRAFFA---LYNQIDRFKNRAGLHTNAIYGFHLMLNHLLERVQ- 56 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYKA R K P+ QLP +R A GI +++ Sbjct: 57 ---PTHVLVAFDAGKTTFRTEMYKDYKAGRAKTPDEFREQLPYIREMLSALGITFYDLEN 113 Query: 115 FEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 +EADDII T +AE E + VTI+S DKDL+QL T + + K E+ +++ Sbjct: 114 YEADDIIGTLDKLAENEDEYDVTIVSGDKDLIQLADNNTTVEISKKGVAEFEEFTPAYLM 173 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P++ + L+AL GD DNIPG+ IG KT LL EYG+LE + N +K+ K Sbjct: 174 EKMGITPKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEYGSLEGVYENIDGMKKSKM 233 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 +EN++ E A LS+ L + PITI L+ + + + +L+ F + F + + + Sbjct: 234 KENLINDKEQAFLSKTLATINISAPITIGLDDINYQGPDLDKLVPFYDEMGFKQFKDNLG 293 Query: 290 T-----TYDCDAANIEPVVLDINTTE 310 +D A ++ + D+ T + Sbjct: 294 APKKQEKFDVSYAEVDSLSADMFTDD 319 >gi|317055011|ref|YP_004103478.1| DNA polymerase I [Ruminococcus albus 7] gi|315447280|gb|ADU20844.1| DNA polymerase I [Ruminococcus albus 7] Length = 856 Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 163/424 (38%), Positives = 274/424 (64%), Gaps = 7/424 (1%) Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608 +L L L+ +L ++L ++ ++ P+ +V++ ME G++ D + +++ + K++ + Sbjct: 435 LLPLAENLKLQLEQTEMLKLFNEVEMPLCEVLASMEHYGVRADTNGIREFGKWLKKDIEA 494 Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668 L + IYDL+G +FN++SPKQLG++L+ KL P+ KTK+G + T A+ LE++ +PI+ Sbjct: 495 LTKQIYDLAGGEFNIASPKQLGEVLYEKLGLPAKKKTKSG-YSTNAEVLEEL-ADKHPIV 552 Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728 + +LE+R L+K+ STY D L + + RVH+ + T TGR++S EPN+QNIP++ + Sbjct: 553 RLVLEYRTLTKLSSTYVDGLLKEV-ESDGRVHSVFKQTETRTGRISSTEPNMQNIPVRKE 611 Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 +G+ +R+ F++ L+ ADYSQIELR+LA + + + FE DIH M A+++FG+ Sbjct: 612 IGRNMRKFFVAGEGCTLLDADYSQIELRVLAAVCGDENMRKTFEEGTDIHAMTASQVFGI 671 Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848 + V P+MR AK +NF IIYGI F L+ + + +EA YIK Y FP + ++++K Sbjct: 672 PADMVLPEMRSAAKAVNFGIIYGIGAFSLSKDIGVSVAEAKQYIKNYLDNFPKVSQFMDK 731 Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908 T +NGYV TIFGRR + E+++ ++ +RAA+NAPIQG+AADI + AM+ V+ Sbjct: 732 TVEDGIKNGYVTTIFGRRRYIPELSATNKVMQAFGKRAAMNAPIQGAAADIIKIAMVKVY 791 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 + L++ KL +++LQ+HDEL+ EV E+ AS ++ ME A + L VP++V++ Sbjct: 792 QRLKEEKLDARLILQVHDELIIEVTPEDKDKASAVLKEEMENA----VKLAVPMEVSVGE 847 Query: 969 SNNW 972 +W Sbjct: 848 GESW 851 Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/295 (32%), Positives = 152/295 (51%), Gaps = 22/295 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L +DG+S + RAFY +L+ G+ NAI GF N+ K + + +A V FD Sbjct: 3 LLCIDGNSIMNRAFYGIRILTNSK-GICTNAITGFMNIYMKEIGEVHPDCVA----VAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ YKANR +P+ L Q+PL++ GI +E +G+EADDI+ T + Sbjct: 58 LKAPTFRHKANSSYKANRKGMPDELAQQMPLIKKLLGLLGIKTVECEGYEADDILGTLSK 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDI-EHVIKKWGIPPEKMVCLQA 184 A G I++ D+D QLVS T KE KI E +++++G+ P +M+ ++A Sbjct: 118 AAADSGNECYILTGDRDSFQLVSENVTVRLAGTKETKIYTPERIMEEYGVTPRQMIEVKA 177 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI--------LINASRIKQKKRRENILEY 236 L GD+ DNI G+ GIG KTA L+Q+ G +EN+ + N +R K + ++ ++ Sbjct: 178 LMGDTSDNISGVKGIGEKTALSLIQQAGTVENLYSDLDKFTITNGNRAKLEAGHQDAID- 236 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 S L + + P+ L + +FL LE +L+ R+ T Sbjct: 237 ------SHFLAEICLEAPVEKDTAAYKLTAPDAAEAKAFLTELEMLRLMERLKLT 285 >gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405] gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405] Length = 881 Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 209/539 (38%), Positives = 319/539 (59%), Gaps = 39/539 (7%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYVLDSGRSSHDIASIAQ 510 K+F E LK+ ++ K K++L GI+++ F D L Y+L S ++I++IA Sbjct: 363 FKEFLEKTP-LKV-YDFKRAKVLLSHLGITLQNPAF-DSRLAKYLL-STVEDNEISTIAS 418 Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ-----LWLLLRPKLIVEKL 565 + + ++P+D++ + + AI V+L+ + +LL + + + Sbjct: 419 LY-----------SQIALPLDEVVYGKGAKKAIPEKAVLLEHLARKVAVLLDTEEPMTEQ 467 Query: 566 LHVYERLD------KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 L +++LD +P+ V+++MEI GI++++ L+ + E L L + IY+L+GE Sbjct: 468 LKAHDQLDLLYDMEQPLAAVLAKMEIAGIKVERQTLQDMQVENEAVLERLTQEIYELAGE 527 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 +FN++SPKQLG ILF KL+ P KT +TA D+ + PI+ ILE+RQ++K Sbjct: 528 EFNINSPKQLGVILFEKLELPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAK 587 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 I+STY L + I + ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ Sbjct: 588 IQSTYVIGLQDWILE-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVP 646 Query: 740 PPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK---VSP 795 L+S+DYSQIELR+LAHI+ L F++ DIH A +F NIEK V+P Sbjct: 647 EEENSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVF--NIEKPEDVTP 704 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 RR+AK +NF ++YGIS F L+ L I R EA YI+ YF R+PGI +Y+E+ R Sbjct: 705 NDRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARD 764 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GYVET+F RR +INS ++R ER AIN+PIQGSAADI + AMI + ++LE Sbjct: 765 KGYVETLFKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALERGA 824 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 TKMLLQ+HDE+V +VP +E+ +++ +ME A I L VPL+ + W E Sbjct: 825 YKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESA----IELVVPLEADENEGKTWYE 879 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/321 (36%), Positives = 165/321 (51%), Gaps = 21/321 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+K+N L L+DGSS +RAF+A L + + +GL NA+ GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNANGLHTNAVYGFNLMLSHLLERIQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYK R K P+ Q P +R GI E+ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIREQLDHLGIRHYELAQY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE F VTI+S DKDL+QL T + + K E+ ++ Sbjct: 115 EADDIIGTLDKMAEATSVPFEVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLK 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ PE+ + L+AL GD DNIPG+ IG KT LL EYG+L+ I + +K K Sbjct: 175 EKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEYGSLDGIYEHIDEMKASKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 +EN++ E A LS+ L + T+ PI I L+ + + L F + + F +L + Sbjct: 235 KENLINDKEQAYLSKTLATIDTNAPIEIGLDDITYTGPHLENLAKFYEEMGFKQLRQAL- 293 Query: 290 TTYDCDAANIEPVVLDINTTE 310 D PV +D E Sbjct: 294 ---DLSGEEAAPVAIDYTEVE 311 >gi|313893738|ref|ZP_07827305.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str. F0412] gi|313441752|gb|EFR60177.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str. F0412] Length = 873 Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 186/486 (38%), Positives = 287/486 (59%), Gaps = 23/486 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L++Y+LD R+++ + +++ S+P I+ V + Sbjct: 406 DMSLLAYLLDPTRTNYGYLYLTERF--------------SVP--SIASGSVDVECVSMVK 449 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 +L + + E+L +YE ++ P+I + ME GI ID + L + +A + L Sbjct: 450 ALLAMNEVACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTEKLAETTARFKEELA 509 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 +++ IYD++GE FN++SPKQLG ILF K+ P KTKTG + T A+ L+ + ++PI Sbjct: 510 QVQQEIYDIAGETFNINSPKQLGVILFEKMNLPIIKKTKTG-YSTDAEVLDMLRH-ESPI 567 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 ++ IL +R ++K+ STY + L IN +T+R+HT ++ T TGRL+S +PNLQNIP++T Sbjct: 568 VEKILAYRSVAKLVSTYCEGLAVLINDKTKRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 627 Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 + G++IR F L+SADYSQIELRILAH++ L + F DIHR AAE+ Sbjct: 628 EKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVL 687 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 G + E V+ + R HAK INF IIYGIS F L+ L I R EA +YI YF R+P + EY+ Sbjct: 688 GKSQEDVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYM 747 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 ++ + G V T+FGR+ +INS + R+ ER A+N PIQG+AADI + AM Sbjct: 748 DRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQ 807 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 V + LE+ +++LLQ+HDELV EV E+ +++ +M+ + L+V L V++ Sbjct: 808 VEQKLEEGNFTSRLLLQVHDELVLEVVNSELEAVEELLRTTMQSV----VELQVHLIVDV 863 Query: 967 KVSNNW 972 + NW Sbjct: 864 HHAENW 869 Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 199/363 (54%), Gaps = 29/363 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DGSS ++RAF+A P L + G P NA+ GF ML KL + E + AV FD Sbjct: 4 LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYE----EINPDYIAVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR E+Y +YK NRP PE L PQ L++ +A GI IE +GFE DDI+ + + Sbjct: 59 KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSLSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AV II+ D+D +QLV+ + ++ T K ++ ++++ + +G P+K++ + Sbjct: 119 KFGTSEMAVQIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVIEM 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +AL GDS DNIPG+PG+G KTA L+ EYG+LE++ + I KK +E ++E + A L Sbjct: 179 KALMGDSSDNIPGVPGVGEKTALKLITEYGDLESVYNHIEDISGKKLKERLVENKDLAFL 238 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI--- 299 SR+L ++TD+ ++ +E ++ + + + L FTKL R+ +A + Sbjct: 239 SRELATIKTDMDLSYKVEDFA-QNFHASEVQPLFETLGFTKLTPRIVQVMGGEATDFGDP 297 Query: 300 -------EPVVLD------INTTE---NKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343 E + LD T+E +K +A+ +D T +T + LS+ + + + Sbjct: 298 GSLFAPQEEISLDDLADAKALTSEFYTDKTVAVHVVLDGKTPFRTVTNAYLSNGDTIVKT 357 Query: 344 EQT 346 + T Sbjct: 358 DDT 360 >gi|312865585|ref|ZP_07725810.1| DNA-directed DNA polymerase [Streptococcus downei F0415] gi|311098853|gb|EFQ57072.1| DNA-directed DNA polymerase [Streptococcus downei F0415] Length = 886 Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 199/516 (38%), Positives = 308/516 (59%), Gaps = 19/516 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L GI + + D L Y+L S +++++IA Q L+ + Sbjct: 380 YDFKRSKVLLSHLGIELPTADFDSRLAKYLL-STVEDNELSTIASLYGQTPLAKDVEVYG 438 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P D++ + +H V+++ +L+ KL + ++ P+ +V++ Sbjct: 439 KGAKKAVPEDQV----LFQHLATKLQVLVETEPVLKEKLAEHGQSDLLFDMELPLANVLA 494 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEITGI++++ LK + E L +L + IYD++G++FN++SPKQLG ILF ++ P+ Sbjct: 495 KMEITGIKVNRQTLKDMEVENQVTLDALTQEIYDMAGQEFNINSPKQLGTILFEEMGLPT 554 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ ILE+RQ++K++STY L + I ++HT Sbjct: 555 SMTKKTKTGYSTAVDVLERLAPHAPIVAKILEYRQIAKLQSTYVVGLQDFI-LDDGKIHT 613 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILA 759 Y T TGRL+S++PNLQNIP++ + G+ IR+AF +P + L+S+DYSQIELR+LA Sbjct: 614 RYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAF-TPEWEDSVLLSSDYSQIELRVLA 672 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 HI+ L F+N DIH A +F + E V+P RR+AK +NF ++YGIS + L+ Sbjct: 673 HISGDEHLIAAFKNGEDIHTATAMRVFNIARPEDVTPNDRRNAKAVNFGVVYGISDYGLS 732 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 L I R A +YI YF RFPGI +Y+E+ + GYVET+F RR +INS + Sbjct: 733 QNLGISRKAAKNYIATYFERFPGIKDYMERVVREAKDKGYVETLFKRRRTLPDINSRNFN 792 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 IRN ER AIN+PIQGSAADI + AMI++ ++LE TKMLLQ+HDE+V EVP E++ Sbjct: 793 IRNFAERTAINSPIQGSAADILKIAMINLDQALEAGSFKTKMLLQVHDEIVLEVPNAELS 852 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A + L VPL + W E Sbjct: 853 AIKKLVKKTMESAIV----LAVPLLADENSGKTWYE 884 Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 115/318 (36%), Positives = 163/318 (51%), Gaps = 23/318 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M +N L L+DGSS +RAF+A L + D GL NAI GF ML ++ K Sbjct: 10 MANKNKLLLIDGSSIAFRAFFA---LYNQIDRFKNPVGLHTNAIYGFHLMLDHMM----K 62 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E+Y DYK R K P+ Q P +R GI +++ Sbjct: 63 RIEPTHVLVAFDAGKTTFRTEMYADYKGGRDKTPDEFREQFPYIREMLDHLGIAYYDLEN 122 Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIK 170 +EADDII T +AE F VTI+S DKDL+QL T + + K E+ +H+++ Sbjct: 123 YEADDIIGTLDKLAENGEFDVTIVSGDKDLIQLADDNTVVEISRKGVAEFEEYTPQHLME 182 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K GI P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K + Sbjct: 183 KMGITPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEAIYDHIDSFKPSKMK 242 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPR---LISFLKALEFTKLINR 287 EN++ E A LS+ L + PI I L+ + + GPR L F ++F + Sbjct: 243 ENLINDREQAFLSKTLATINIQSPIEIGLDDTLYK---GPRLDELAKFYDEMDFKQFKAG 299 Query: 288 VATTYDCDAANIEPVVLD 305 + + + I+ V+D Sbjct: 300 LGLKEEAEQVEIKYQVVD 317 >gi|225570709|ref|ZP_03779732.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM 15053] gi|225160536|gb|EEG73155.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM 15053] Length = 871 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 174/419 (41%), Positives = 265/419 (63%), Gaps = 7/419 (1%) Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615 LR KL ++ H++ ++ P++ + ME G++I+ + LK ++ + LE+ IY+ Sbjct: 458 LRQKLKETQMEHLFTDIEMPLVFTLYDMEQNGVRIEAEALKFYGEQLGIKIEELEKEIYE 517 Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675 +GE+FN++SPKQLG ILF K+ G KTKTG + T A L+++ D P++ ILE+R Sbjct: 518 AAGEEFNINSPKQLGVILFDKMGLKGGKKTKTG-YSTAADVLDKL-APDYPVVAQILEYR 575 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 QL+K+KSTYAD L N+I+ R+H ++ T TGR++S EPNLQNIP++ +LG+ IR+ Sbjct: 576 QLTKLKSTYADGLSNYISG-DGRIHGKFNQTITATGRISSTEPNLQNIPVRMELGRLIRK 634 Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 FI I ADYSQIELR+LAH + L ++ DIHR+ A+++F V +V+ Sbjct: 635 VFIPEDGYVFIDADYSQIELRVLAHCSGDEQLINAYKEQKDIHRITASQVFHVPFGEVTD 694 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 RR+AK +NF I+YGIS F L+ L I R EAA YI YF +PGI +++ T ++ Sbjct: 695 LQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAKYIDDYFKTYPGIKLFLDDTVAHAKE 754 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GYV T+FGRR E++S R+ ER A+N+PIQG+AADI + AMI V++ L++ Sbjct: 755 MGYVVTLFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIGVNRRLKEKH 814 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++++LQ+HDEL+ E E+ I+ ME A +L VPL++++ +NW E Sbjct: 815 MRSRLVLQVHDELLIEAYGPELEEVKAILKDEMEHAA----SLEVPLEIDMHTGDNWYE 869 Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 103/315 (32%), Positives = 170/315 (53%), Gaps = 17/315 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ +GL NA+ GF N+++K+L E + V FD Sbjct: 5 IVLIDGHSILNRAFYGLPDLTNS-EGLHTNAVYGFLNIMFKILD----EEAPEYLTVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+E+Y DYK R + E L Q+P+++ +A GI IE G EADD++ T + Sbjct: 60 VHAPTFRHEMYADYKGTRKPMAEELRQQVPVIKDVLKAMGINIIEQAGLEADDLLGTISK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDI-----EHVIKKWGIPPEKMV 180 ++G V++IS D+DL+QL + + K+ + +I E V +++ + PE+ + Sbjct: 120 RCGRQGMDVSVISGDRDLLQLATKRVKIRIPKTKQGRTEIEDYYAEDVKERYQVTPEEFI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+AL GD+ DNIPG+P IG KTA ++ EY ++EN + +K + + + E+ + A Sbjct: 180 DLKALMGDASDNIPGVPSIGEKTATKIITEYHSIENAYEHVEELKPPRAAKALKEHWDMA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA--N 298 +SRKL + D + L+ L + + + L+F L+ R +D A + Sbjct: 240 VMSRKLAKINVDAGVAFRLDEAKLGNVFTEEAYGWFQRLQFKNLLGR----FDVKAPSNS 295 Query: 299 IEPVVLDINTTENKG 313 +E +I + E G Sbjct: 296 VEDCFREIASPEEAG 310 >gi|212695718|ref|ZP_03303846.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM 7454] gi|212677391|gb|EEB36998.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM 7454] Length = 681 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 248/773 (32%), Positives = 397/773 (51%), Gaps = 124/773 (16%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DGSS I+RAF+A P L+ DG+ N + GF M ++ ++ + + I V FD Sbjct: 5 VMLIDGSSLIFRAFFALPNLTN-ADGVMTNGVYGFLTMYFRAVEEYKPDYIL----VAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ + DYKANR K P L Q +++ + + ++I GFEADDI+ TY+ Sbjct: 60 KKTKTFRHKEFEDYKANRDKAPSELNYQFGILKDILDSLNVKYLDIDGFEADDIVGTYSK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 IA EG II+ DKD QLV+ +Y T K E+I E + + +G+ P++++ + Sbjct: 120 IARDEGLETVIITGDKDYFQLVNDDVIVYLTRKGISQMEEITEEKIKEDYGLSPKQLIDV 179 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD DNIPG+ GIG KTA +++YG++E + N I KK +EN+ Sbjct: 180 KGLMGDKSDNIPGVDGIGEKTALKYIKKYGSMEALYENLDDISGKKTKENL--------- 230 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 R I+FL +K I + T P+ Sbjct: 231 -------------------------KNSRQIAFL-----SKKIGTIVTN--------API 252 Query: 303 VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ-- 360 +I+ D +K SL ++ SK N + FLE+ + S+ Sbjct: 253 DYEIS---------------DLRVKNPDMESLKEKFSKYNFNK-----FLEKFEDGSKEQ 292 Query: 361 -------YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 Y +D ++ I +DI++ E I FK I + + HSK IAI + Sbjct: 293 REELDFSYSFTDDDFSVI---EDIEK-----ENI--FYFKTIFENDNYIHSKAFKIAIKS 342 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 K FI ++ + KK+FE+E+ K+ +IK D Sbjct: 343 PSSK---------TFI-------------YNPDQKFVENFKKYFEDENINKVSFDIKEDI 380 Query: 474 LVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIP 529 ++ ++ GI + ++D MLM Y++D RSS+D+ + +Q +L Y +++L ++ Sbjct: 381 VLFNKLGIEINFPYDDTMLMHYLIDPSRSSYDLKTFSQAFLKYEVLNEEDLLGKGRNKKS 440 Query: 530 IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQ 589 +S+ ++ ++ N I +L KL + +Y+ + + V+++MEITG Sbjct: 441 YKDLSEKELGKYLSSIINAIEDSLDILTDKLKELSMYELYKDCEIKLSKVLAEMEITGFI 500 Query: 590 IDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ 649 D++ L+++ E+S L LE+ IY+L+G +FN++SPKQL ILF L+ P KTKTG Sbjct: 501 CDKNELEKIKDEVSLELEDLEKVIYELAGSEFNINSPKQLSIILFEDLELPIIKKTKTG- 559 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 + T A+ LE++ +PII I +R++ K+KSTY +SL I++ R+ + + T Sbjct: 560 YSTDAKVLEKLR-DKHPIIGKIERYREMYKLKSTYLESLEECIDE-DGRIRSTFKQNVTA 617 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 TGRL+S EPNLQN+PI+T+ G+KIR+AF + K LI ADYSQIELR+LAH+A Sbjct: 618 TGRLSSTEPNLQNLPIRTEEGRKIRKAFKADKDKVLIDADYSQIELRVLAHLA 670 >gi|289166948|ref|YP_003445215.1| DNA-directed DNA polymerase [Streptococcus mitis B6] gi|288906513|emb|CBJ21345.1| DNA-directed DNA polymerase [Streptococcus mitis B6] Length = 877 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L+R+G+ ++ D L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKAKVLLNRFGVDLQAPAFDSRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGITVKKETLLEMQAENELVIEKLTQEIYELAGEEFNINSPKQLGVLLFEKLALPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWENSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ E V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELAE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 114/288 (39%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E E++++K GI P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPEYLMEKLGITP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ IG KT LL E+G+LE I N +K K ++N++ Sbjct: 179 TQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKDNLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIEIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047] gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047] Length = 886 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 199/515 (38%), Positives = 309/515 (60%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEIL-- 521 ++ K K++L G+ + D L +Y+L S +++A++A+ + +S E++ Sbjct: 380 YDFKRSKVLLSHLGLDLPAASYDARLANYLL-STVEDNEMATLARLYTTISLDTDEVVYG 438 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P DK + + H V+L ++ KL + +Y ++ P+ +V++ Sbjct: 439 KGVKRAVP-DK---AVLLGHLARKVQVLLDSRPVMLDKLAEHEQADLYTDIELPLANVLA 494 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI ++QD L++++ + + L + IY+++GE FN++SPKQLG ILF K++ P Sbjct: 495 KMEIEGIAVNQDSLQEMAEQNKVVIEELTQEIYEMAGEVFNINSPKQLGVILFEKMQLPL 554 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ++K++STY L ++I R+HT Sbjct: 555 HLTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-MADGRIHT 613 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAH Sbjct: 614 RYLQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAH 673 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F+ DIH A +FG+ E V+ RR+AK +NF I+YGIS F L+ Sbjct: 674 ISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIVYGISDFGLSN 733 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L IPR +A YI YF R+PGI Y+E+ + GYVET+F RR +INS + ++ Sbjct: 734 NLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETLFKRRRQLPDINSRQFNV 793 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ ++L TKMLLQ+HDE+V EVP E+ Sbjct: 794 RSFAERTAINSPIQGSAADILKIAMINLDQALVAGGFETKMLLQVHDEIVLEVPNHELAA 853 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ +ME A ++L VPL+V+ +W E Sbjct: 854 VKALVKETMESA----VSLAVPLRVDESAGKSWYE 884 Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 167/301 (55%), Gaps = 17/301 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ + Sbjct: 7 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 62 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E++ DYKA R K P+ Q P +R A GI E++ + Sbjct: 63 --PTHVLVAFDAGKTTFRTELFADYKAGRAKTPDEFREQFPYIRDMLGALGIAFYELEHY 120 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 121 EADDIIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDANTVVEISKKGVAEFEEFTPAYLM 180 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 K G+ PE+ + L+AL GD DNIPG+ IG KT LL EYG+LE I + K K Sbjct: 181 DKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEYGSLEGIYEHIDSFKPSKM 240 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 +EN+L E A LS+ L + T PITI LE ++ + + RL F ++F +L N +A Sbjct: 241 KENLLHDKEQAFLSKTLATINTSAPITIGLEDIVYQGPDLDRLSQFYDEMDFVQLKNALA 300 Query: 290 T 290 + Sbjct: 301 S 301 >gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 880 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 195/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521 ++ K K++L GI + D L +Y+L S +++++IA+ + + +E Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + + EH V+L + KL + L +Y+ ++ P+ +V++ Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI++++ L+ ++ + + +L + IYD++G++FN++SPKQLG ILF K++ P Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKAIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ++K++STY L ++I ++HT Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LTDGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F DIH A +FG++ V+ RR+AK +NF I+YGIS F L+ Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF R+PGI Y+E + GYVET+F RR +INS ++ Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ K+L+ KMLLQ+HDE+V EVP +E+T Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A ++L VPL V+ +W E Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878 Score = 184 bits (467), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 167/304 (54%), Gaps = 23/304 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K PE Q P +R A GI E++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P + + L+AL GD DNIPG+ IG KT LL ++G+LE I + K K Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHKFGSLEGIYEHIDGFKASKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286 +EN++ + A LS+ L + T PITI L+ ++ NGP + S F ++F +L Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291 Query: 287 RVAT 290 +A+ Sbjct: 292 GLAS 295 >gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B] Length = 862 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 199/526 (37%), Positives = 309/526 (58%), Gaps = 38/526 (7%) Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510 YLKK FEN KI HN K VL + I + F D + +Y+++S + + ++ + Sbjct: 366 YLKKLFENTS-EKIIHNAKNLFTVLSKLDIDINNFVFDTEIAAYLIESSDKEYTLKTLFE 424 Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK---LIVEKLLH 567 +L T ++I S I +S+ L+ L+ K L +E LL+ Sbjct: 425 TYLHETYQDI------SQEISNLSN----------------LYQRLKEKIKELQMEDLLY 462 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ P++ V++ ME G ++D++ L Q+ + + ++ IY+++GE+FN+SSPK Sbjct: 463 ---KIELPLVKVLADMEKVGFKVDREQLDQLREKFINEITVSQKEIYEMAGEEFNISSPK 519 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF KL P KTKTG + T A+ LE++ +PII I +RQL+K+ STY + Sbjct: 520 QLGKILFEKLDLPVIKKTKTG-YSTNAEVLEKLK-DKHPIIDKITYYRQLTKLNSTYVEG 577 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI- 746 L H+ + R+H+ ++ T TGRL+S EPNLQNIPIK ++G+ IR+ F+ + LI Sbjct: 578 LI-HVIDQDGRIHSSFNQTVTTTGRLSSTEPNLQNIPIKYEMGRAIRKVFVPNDEESLIL 636 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 SADYSQIELR+LAH+A + + +DIH A+E+F + +++V+ + R AK +NF Sbjct: 637 SADYSQIELRVLAHMADDENMKTAYLEHIDIHTKTASEVFNLPLDQVTKEKRSAAKAVNF 696 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YGIS F L+ L+I + EA YI YF R+P + EYI T + YV TIF RR Sbjct: 697 GIVYGISDFALSEDLKISKKEAKQYIDTYFSRYPKVKEYISSTIAKAEKELYVNTIFNRR 756 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 EI S ++ + +R A+NAPIQGSAADI + AM++V K L++ KL + ++LQ+HD Sbjct: 757 RFIPEITSSNKIVKALGDRLAMNAPIQGSAADIIKLAMVNVSKRLKEEKLKSSLILQVHD 816 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E++ V ++E+ T +++ ME I+ VPL+V+I W Sbjct: 817 EIILNVYKDELETVKELVKKEMESV----IDFSVPLEVDINTGTTW 858 Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/289 (38%), Positives = 166/289 (57%), Gaps = 15/289 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DG S + RAFYA P L+ +GL NAI GF NML+K+ ++ + + I + FD Sbjct: 4 LVILDGHSLMNRAFYAIPPLTTA-EGLHTNAIFGFINMLFKIREDIKPDYIVT----TFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+E Y DYKA R ++P+ L Q ++ I EI GFEADD+I T Sbjct: 59 RKAPTFRHEEYQDYKAGRKRMPDELHEQFEPLKDILSKMAINIFEIDGFEADDLIGTLAV 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCL 182 AE EG V I++ D+D +QL S + T K E D +I+ +G+ P + + + Sbjct: 119 KAESEGIEVYIVTGDRDALQLASDNIKVLLTKKGVSEREVYDRNRMIEDYGVTPTQFIDV 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD+ DNIPG+PGIG KTA L++EYG++E +L N ++K K +EN+ + E A Sbjct: 179 KGLMGDASDNIPGVPGIGEKTAYKLIKEYGSIEGVLDNLDKLKG-KIKENLESHCEDAIF 237 Query: 243 SRKLVMLRTDVPITIPLEHLILE---DCNGPRLISFLKALEFTKLINRV 288 S+KL + T+VPI I L+ + + D R + F +F LIN++ Sbjct: 238 SKKLATIITNVPIDIDLDDIKSQEAYDVKALRELFF--KYQFKSLINKL 284 >gi|222153812|ref|YP_002562989.1| DNA polymerase I [Streptococcus uberis 0140J] gi|222114625|emb|CAR43640.1| DNA polymerase I [Streptococcus uberis 0140J] Length = 881 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 179/436 (41%), Positives = 277/436 (63%), Gaps = 7/436 (1%) Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 H + V+++ + KL L ++E ++ P+ +V+++MEITGI+++++ L +++ Sbjct: 449 HLAKKIKVLVESKATMLDKLSDHDQLALFEDIEMPLANVLAKMEITGIKVNKETLVEMAE 508 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 + + L + IYDL+GE+FN++SPKQLG ILF K++ P KT +TA D+ + Sbjct: 509 QNKVIIDRLTQEIYDLAGEEFNINSPKQLGSILFEKMQLPIEMTKKTKTGYSTAVDVLER 568 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 P++ IL++RQ++K++STY L ++I ++HT Y T TGRL+S++PNL Sbjct: 569 LAPIAPVVAKILDYRQITKLQSTYLIGLQDYI-MEDGKIHTRYVQDLTQTGRLSSIDPNL 627 Query: 721 QNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 QNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAHI+ L F DIH Sbjct: 628 QNIPIRMEQGRLIRKAFTASSEDALLLSSDYSQIELRVLAHISGDQHLITAFNEDADIHT 687 Query: 780 MVAAEIFGVNIEK-VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 A +F ++ E+ V+ RR+AK +NF I+YGIS F L+ L I R +A +YI YF R Sbjct: 688 STAMRVFAIDKEEDVTANDRRNAKAVNFGIVYGISDFGLSNNLGISRQKAKEYINTYFDR 747 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PGI +Y++ + GYVET+F RR +INS ++R+ ER AIN+PIQGSAAD Sbjct: 748 YPGIKDYMDSIVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGSAAD 807 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I + AMI++ K+LE+ + TKMLLQ+HDE+V EVP++E+ Q++ +ME A ++L Sbjct: 808 ILKIAMINLDKALEEGRFKTKMLLQVHDEIVLEVPKDELEKVKQLVKETMEHA----VDL 863 Query: 959 RVPLKVNIKVSNNWQE 974 VPL+ + +W E Sbjct: 864 SVPLRADENSGKSWYE 879 Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 118/293 (40%), Positives = 161/293 (54%), Gaps = 13/293 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M+ +N L L+DGSS +RAF+A R GL NAI GF ML +++ + Sbjct: 1 MENKNRLLLIDGSSVAFRAFFALYQQIDRFRNQAGLHTNAIYGFHLMLDHMMKRVQ---- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR E+Y DYK R K P+ Q P +R +A G+P ++ +EA Sbjct: 57 PTHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIREMLKALGVPYYDLVNYEA 116 Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171 DDII T IAE+ F VTI+S DKDL+QL T + + K E+ +++++K Sbjct: 117 DDIIGTLDKIAERTEVPFDVTIVSGDKDLIQLTDANTVVEISKKGVAEFEEFTPDYLMEK 176 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 GI PE+ + L+AL GD DNIPG+ IG KT LLQEYG+LE I N K K +E Sbjct: 177 MGITPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLQEYGSLEGIYANVDSFKPSKMKE 236 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 N++ A LS+ L + T+ PITI LE L+ N L SF + F +L Sbjct: 237 NLINDKAQAFLSKTLATIDTNAPITIGLEDLVYHGPNHEALASFYDEMGFVQL 289 >gi|182683002|ref|YP_001834749.1| DNA polymerase I [Streptococcus pneumoniae CGSP14] gi|182628336|gb|ACB89284.1| DNA polymerase I [Streptococcus pneumoniae CGSP14] Length = 889 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 383 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 441 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 442 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 497 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 498 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 557 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 558 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 616 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 617 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 676 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 677 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 736 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 737 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 796 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 797 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 856 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 857 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 887 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 18 LLLIDGSSVAFRAFFA---LYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSH 70 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI ++ +EADDI Sbjct: 71 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYDLAQYEADDI 130 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 131 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLTP 190 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 191 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 250 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 251 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 298 >gi|307066713|ref|YP_003875679.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pneumoniae AP200] gi|306408250|gb|ADM83677.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pneumoniae AP200] Length = 889 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 383 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 441 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 442 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 497 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 498 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 557 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 558 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 616 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 617 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 676 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 677 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 736 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 737 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 796 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 797 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 856 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 857 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 887 Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 18 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 70 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 71 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 130 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 131 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 190 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 191 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 250 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 251 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 298 >gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I) [Deinococcus deserti VCD115] Length = 923 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 190/498 (38%), Positives = 293/498 (58%), Gaps = 37/498 (7%) Query: 481 ISMRG-----FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535 +S+RG +D +L +Y+LD S+ +A++ ++L P D Sbjct: 453 LSVRGTVVDPGDDPLLHAYLLDP--SNTTMATVTPRYLGV-----------PWPAD---- 495 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 A + V +L L P+L E +Y ++KP+ V+++ME+ G+++D + + Sbjct: 496 ------AAGRAAVTARLLRDLPPQLD-EARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYI 548 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTA 654 + ++ + L +LE I+ G +F++ SP QL +L+ +L SG KTK TG+ T Sbjct: 549 RGLAGAAAARLAALETEIHQHVGREFSVRSPSQLETVLYDELGLASGRKTKLTGKRSTAV 608 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE + ++P+I +LE+R+L K++ TY D LP+ +N RT R+HT ++ + TGRL+ Sbjct: 609 AALEPLRD-EHPVIPLVLEFRELDKLRGTYLDPLPSLVNPRTGRLHTTFAQTAVATGRLS 667 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 SL PNLQNIPI++++G++IR+ FI+ LISADYSQIELR+LAHIA + Q F Sbjct: 668 SLNPNLQNIPIRSEMGREIRKGFIADKGYCLISADYSQIELRLLAHIADDPLMQQAFREG 727 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIHR AA++ G+ + V+ RR AKT+NF ++YG+S RL+ +L I EAA +I+ Sbjct: 728 ADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVLYGMSAHRLSNELGISYVEAAGFIET 787 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF+ +PGI YI++T F R GYVET++GRR + E+ + ++R ER A N PIQG Sbjct: 788 YFNTYPGIRGYIDRTLEFGRTQGYVETMYGRRRYVPELAATNRNVREAGERLAYNMPIQG 847 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AADI + AMI + + LE L ++LLQ+HDEL+ E PE +++ ME A Sbjct: 848 TAADIIKHAMIRLDRELE--ALGGRLLLQVHDELLIEAPENRAEDVARLTREVMEGAA-- 903 Query: 955 KINLRVPLKVNIKVSNNW 972 L VPL V + NW Sbjct: 904 --KLSVPLAVEVGTGPNW 919 Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/258 (37%), Positives = 140/258 (54%), Gaps = 19/258 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG + +R+++A P L+ G NAI GF M +L + + I V+FD Sbjct: 10 LVLIDGHALAFRSYFALPPLTNSR-GEATNAILGFLRMTLRLAKQRSNQVI-----VVFD 63 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+E + YK+ R + P L Q+ +R A G P +E G+EADD+IA+ T Sbjct: 64 PPVKTFRHEQFDGYKSGRAETPADLPAQINRIRAIVDALGFPRLEEPGYEADDVIASLTR 123 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPPEKMVC 181 AE G V I+++D+D QL L D VK D + V +K+G+ + V Sbjct: 124 KAEGSGMQVRIVTSDRDAYQL------LDDHVKVIANDFSLIGPDQVFEKYGVTVRQWVD 177 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAET 239 +ALTGD+ DNIPG GIG KTAA LLQEYG LE I A +K R+ +L+ E Sbjct: 178 YRALTGDASDNIPGAKGIGPKTAAKLLQEYGTLEGIYEAARAGTLKPDGTRQKLLDSEEA 237 Query: 240 ARLSRKLVMLRTDVPITI 257 + S +L + TD+P+ + Sbjct: 238 VKFSHELSCMVTDLPLEV 255 >gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis] Length = 924 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 194/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521 ++ K K++L GI + D L +Y+L S +++++IA+ + + +E Sbjct: 418 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 476 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + + EH V+L + KL + L +Y+ ++ P+ +V++ Sbjct: 477 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 532 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI++++ L+ ++ + + +L + IYD++G++FN++SPKQLG ILF K++ P Sbjct: 533 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 592 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ++K++STY L ++I ++HT Sbjct: 593 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 651 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAH Sbjct: 652 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSQEDAVLLSSDYSQIELRVLAH 711 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F DIH A +FG++ E V+ RR+AK +NF I+YGIS F L+ Sbjct: 712 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAEDVTANDRRNAKAVNFGIVYGISDFGLSN 771 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF R+PGI Y+E + GYVET+F RR +INS ++ Sbjct: 772 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 831 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ +L+ KMLLQ+HDE+V EVP +E+T Sbjct: 832 RSFAERTAINSPIQGSAADILKIAMINLDNALQAGGFKAKMLLQVHDEIVLEVPNDELTA 891 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A ++L VPL+ + +W E Sbjct: 892 IKKLVKDTMEAA----VDLAVPLRADENAGQSWYE 922 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 167/304 (54%), Gaps = 23/304 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ + Sbjct: 45 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 100 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K P+ Q P +R A GI E++ + Sbjct: 101 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 158 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 159 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 218 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K Sbjct: 219 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHVEGFKASKM 278 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286 +EN++ + A LS+ L + T PITI L+ ++ NGP + S F ++F +L Sbjct: 279 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 335 Query: 287 RVAT 290 +A+ Sbjct: 336 GLAS 339 >gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115] Length = 926 Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 190/498 (38%), Positives = 293/498 (58%), Gaps = 37/498 (7%) Query: 481 ISMRG-----FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535 +S+RG +D +L +Y+LD S+ +A++ ++L P D Sbjct: 456 LSVRGTVVDPGDDPLLHAYLLDP--SNTTMATVTPRYLGV-----------PWPAD---- 498 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 A + V +L L P+L E +Y ++KP+ V+++ME+ G+++D + + Sbjct: 499 ------AAGRAAVTARLLRDLPPQLD-EARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYI 551 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTA 654 + ++ + L +LE I+ G +F++ SP QL +L+ +L SG KTK TG+ T Sbjct: 552 RGLAGAAAARLAALETEIHQHVGREFSVRSPSQLETVLYDELGLASGRKTKLTGKRSTAV 611 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE + ++P+I +LE+R+L K++ TY D LP+ +N RT R+HT ++ + TGRL+ Sbjct: 612 AALEPLRD-EHPVIPLVLEFRELDKLRGTYLDPLPSLVNPRTGRLHTTFAQTAVATGRLS 670 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 SL PNLQNIPI++++G++IR+ FI+ LISADYSQIELR+LAHIA + Q F Sbjct: 671 SLNPNLQNIPIRSEMGREIRKGFIADKGYCLISADYSQIELRLLAHIADDPLMQQAFREG 730 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIHR AA++ G+ + V+ RR AKT+NF ++YG+S RL+ +L I EAA +I+ Sbjct: 731 ADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVLYGMSAHRLSNELGISYVEAAGFIET 790 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF+ +PGI YI++T F R GYVET++GRR + E+ + ++R ER A N PIQG Sbjct: 791 YFNTYPGIRGYIDRTLEFGRTQGYVETMYGRRRYVPELAATNRNVREAGERLAYNMPIQG 850 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AADI + AMI + + LE L ++LLQ+HDEL+ E PE +++ ME A Sbjct: 851 TAADIIKHAMIRLDRELE--ALGGRLLLQVHDELLIEAPENRAEDVARLTREVMEGAA-- 906 Query: 955 KINLRVPLKVNIKVSNNW 972 L VPL V + NW Sbjct: 907 --KLSVPLAVEVGTGPNW 922 Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/258 (37%), Positives = 140/258 (54%), Gaps = 19/258 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG + +R+++A P L+ G NAI GF M +L + + I V+FD Sbjct: 13 LVLIDGHALAFRSYFALPPLTNSR-GEATNAILGFLRMTLRLAKQRSNQVI-----VVFD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+E + YK+ R + P L Q+ +R A G P +E G+EADD+IA+ T Sbjct: 67 PPVKTFRHEQFDGYKSGRAETPADLPAQINRIRAIVDALGFPRLEEPGYEADDVIASLTR 126 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPPEKMVC 181 AE G V I+++D+D QL L D VK D + V +K+G+ + V Sbjct: 127 KAEGSGMQVRIVTSDRDAYQL------LDDHVKVIANDFSLIGPDQVFEKYGVTVRQWVD 180 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAET 239 +ALTGD+ DNIPG GIG KTAA LLQEYG LE I A +K R+ +L+ E Sbjct: 181 YRALTGDASDNIPGAKGIGPKTAAKLLQEYGTLEGIYEAARAGTLKPDGTRQKLLDSEEA 240 Query: 240 ARLSRKLVMLRTDVPITI 257 + S +L + TD+P+ + Sbjct: 241 VKFSHELSCMVTDLPLEV 258 >gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ] Length = 883 Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 186/486 (38%), Positives = 295/486 (60%), Gaps = 10/486 (2%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D++ +V + G + I S+++K+L + +K +P + D VQE + ++ Sbjct: 403 DVVQAQFVANPGEK-NTIESLSEKFLGSSIPAF--EKKKPLPSENEED-LVQEISTARAH 458 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 ++ L +L ++LL+V+ +D + V++ ME G+ I++ + E+ L Sbjct: 459 SCFRVSEFLLEELERKELLNVFHDIDNKLTPVLAAMEYEGVHINKAFFSEYEKELQTKLD 518 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNP 666 L+ ++ S E NL+SPKQ+G +LF +L+ P G KTKTG + T + LE + G + Sbjct: 519 ELQASVDKFSKEPVNLNSPKQVGVLLFEELELPVGKKTKTG-YSTDSSVLEDLAAKGLSE 577 Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 + ILE+R++ KI STY ++P +N+ + ++HT ++ TGRL+S PNLQNIPI+ Sbjct: 578 VPALILEYREVGKILSTYVKAIPELLNEASGKIHTHFNQNVAATGRLSSNHPNLQNIPIR 637 Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 ++LG+++R+ FI+ P K L++ADYSQ+ELR+LAH + + F+ +DIHR A+EI Sbjct: 638 SELGRRVRKGFIAGPGKILLAADYSQVELRLLAHFSNDKTMIDAFKKGVDIHRRTASEIM 697 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 GV +E+V R AK +NF ++YG S F LA L+IPR EA +YI YF RF + Y+ Sbjct: 698 GVPVEEVGSNDRSKAKAVNFGLMYGQSSFGLAAALKIPRKEAKEYITNYFERFSSVKGYL 757 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 + K + GY T+ GR+ + +I+S +I+ ER AIN+PIQG+AADI + AMI+ Sbjct: 758 DHLKEECEKTGYAITLKGRKRYLADIHSTNRTIKANAERVAINSPIQGTAADIIKLAMIN 817 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 + K L+D KL +KM+LQ+HDEL+FEV E E+ I+ MEK ++L VPL V++ Sbjct: 818 IQKVLDDKKLKSKMILQVHDELIFEVVESELEEMKTILKDGMEKV----VSLSVPLDVDM 873 Query: 967 KVSNNW 972 V NW Sbjct: 874 GVGVNW 879 Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 107/278 (38%), Positives = 154/278 (55%), Gaps = 5/278 (1%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L +VD SSFI+RAFYA +L +G+PVNA+ G +ML KLL + SH + Sbjct: 7 KNRLIIVDISSFIFRAFYAIRVL-HSPEGVPVNAVHGVLSMLLKLLSKYQ----PSHILL 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 D +FRNE++ YKANR + PE L PQ L++ +P+ ++GFEADD+I + Sbjct: 62 ARDTKGGSFRNELFDQYKANRSEPPEELKPQFDLIKQLIDHMELPSSTVEGFEADDLIGS 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + + + I S DKDLMQ V + DT+K++ D E V +K G+ PE++V Sbjct: 122 ACVQWKSDFDEILIASGDKDLMQFVGDNIKMLDTMKDKTYDREGVFEKMGVYPEQIVDYL 181 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 ++ GD+ DNIPG+ GIG K AA LL E+G LE + +K KK EY E LS Sbjct: 182 SMVGDASDNIPGMKGIGAKGAAKLLAEHGTLEKCIEIKDTLKGKKLTTAFGEYLEDGLLS 241 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 + L+ ++TDV + + L FL+ L F Sbjct: 242 KSLIEIKTDVDLGLKSTDSKFSFYPADSLFDFLRGLGF 279 >gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] Length = 875 Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 215/627 (34%), Positives = 334/627 (53%), Gaps = 62/627 (9%) Query: 383 KLETIGSASFKIITDTMDAFHSKPIA----IAISTLDQKDDTSFKVETIFIDLSVHTSQD 438 K+E S F+ + D MD A + + + + D T I ++++ Sbjct: 270 KIELFKSLEFRQLLDGMDVEADNATASRDFVPTTNMSKVDFTQLSEAAIHVEVA------ 323 Query: 439 STGKNTLTKEILSY---------------------LKKFFENEHFLKIGHNIKYDKLVLH 477 G N L E+L + L + E+E K H+ K + + Sbjct: 324 --GPNYLKDELLKFGLYDGEQYVVIPFDKVNEYPELVAWLEDETTQKWVHDAKKTYIAMK 381 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKEIL---KSRKSSIPIDK 532 R I++ D ML SY++D R+ D+ S+ + ++ + ++ K + IP D Sbjct: 382 RSDIAIENVVFDTMLASYIIDPSRTIEDVHSVMTHFDQTFVQDDVSVYGKGKSFHIPEDG 441 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LDKPMIDVVSQMEIT 586 + D + IL +++P+++ +L +E+ ++ P+ ++S+ME Sbjct: 442 VLDKHIAS--------ILDAIHVVQPQMMT--ILEAHEQTSLLSEIELPLALILSEMEYI 491 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 GI D D LK++ I L L E I++ +GEKFN++SPKQLG ILF KL+ P KTK Sbjct: 492 GIHTDIDTLKEMETVIQTELDQLIEQIHEQAGEKFNINSPKQLGVILFEKLELPVIKKTK 551 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 TG + T LE++ +PII NIL +R LSK++STY + L I R+HT ++ Sbjct: 552 TG-YSTAVDVLEKLQNA-HPIIDNILTYRTLSKLQSTYVEGLQKVIWDDG-RIHTRFNQT 608 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKIT 765 TGRL+S++PNLQNIPI+ + G+KIR+AF S +I +ADYSQIELR+LAHI Sbjct: 609 LAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKSTHEDYVILAADYSQIELRVLAHITGDP 668 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L Q F ++ D+H A ++F V ++V+ MRR AK +NF I+YGIS + L+ L I R Sbjct: 669 TLQQAFNDNEDVHTTTAMKVFNVAADEVTSLMRRQAKAVNFGIVYGISDYGLSQSLGITR 728 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA +I Y + FPG+ +Y++ +Q GYVET+ RR + +I S ++R ER Sbjct: 729 KEAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNLRGFAER 788 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 A+N+PIQGSAADI + AM+ H+ ++ ++LLQ+HDEL+FEVP++E+ + + Sbjct: 789 TAMNSPIQGSAADIIKLAMVQFHREVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVE 848 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972 M A + L VPL V W Sbjct: 849 EIMAHA----LQLDVPLSVESDYGKTW 871 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 109/301 (36%), Positives = 165/301 (54%), Gaps = 13/301 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG+S +RAFYA PLL K G+ NA+ GF +L K++ KE +HF V Sbjct: 2 DKLILIDGNSLSFRAFYALPLLKNKA-GIHTNAVYGFARLLEKII----KEEQPTHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y DYK R K P L Q P +R A+ I E++ +EADDII T Sbjct: 57 FDAGKTTFRHETYQDYKGGRQKTPPELSEQFPYIRQLIDAYQIQRYELENYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178 + A++ G II+ D+DL QL + +Y T K+ D++H ++ G+ P + Sbjct: 117 SREADQAGMQTIIITGDRDLTQLATDQVTIYYT-KKGVTDVDHYTPQFIAEKYNGLKPSQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ L+ L GDS DNIPG+ G+G KTA LL ++G +E + + + KK +E + + Sbjct: 176 IIDLKGLMGDSSDNIPGVAGVGEKTAMKLLNQFGTVEGVYDHIEEVSGKKLKEKLENSHD 235 Query: 239 TARLSRKLVMLRTDVPITIPLEHLIL-EDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S+ L + D PIT+ LE L + + I K+LEF +L++ + D A Sbjct: 236 DALMSKTLATINCDSPITVSLEDTRLPQKMDESAKIELFKSLEFRQLLDGMDVEADNATA 295 Query: 298 N 298 + Sbjct: 296 S 296 >gi|303260668|ref|ZP_07346631.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293] gi|303263159|ref|ZP_07349082.1| DNA polymerase I [Streptococcus pneumoniae BS397] gi|303269472|ref|ZP_07355239.1| DNA polymerase I [Streptococcus pneumoniae BS458] gi|302638198|gb|EFL68670.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293] gi|302641006|gb|EFL71386.1| DNA polymerase I [Streptococcus pneumoniae BS458] gi|302646932|gb|EFL77156.1| DNA polymerase I [Streptococcus pneumoniae BS397] Length = 877 Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI ++ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLNHMGIRHYDLAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|303254143|ref|ZP_07340257.1| DNA polymerase I [Streptococcus pneumoniae BS455] gi|302598897|gb|EFL65929.1| DNA polymerase I [Streptococcus pneumoniae BS455] Length = 870 Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 364 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 422 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 423 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 478 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 479 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 538 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 539 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 597 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 598 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 657 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 658 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 717 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 718 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 777 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 778 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 837 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 838 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 868 Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 108/286 (37%), Positives = 153/286 (53%), Gaps = 17/286 (5%) Query: 9 LVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 ++DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 1 MIDGSSVAFRAFFA---LYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSHIL 53 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR E+Y DYK R K P+ Q P +R GI ++ +EADDII Sbjct: 54 VAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYDLAQYEADDIIG 113 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178 T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P + Sbjct: 114 TLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLTPAQ 173 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ E Sbjct: 174 FIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDKE 233 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 234 QAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 279 >gi|301801001|emb|CBW33665.1| DNA polymerase I [Streptococcus pneumoniae INV200] Length = 877 Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI ++ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYDLAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|94993561|ref|YP_601659.1| DNA polymerase I [Streptococcus pyogenes MGAS10750] gi|94547069|gb|ABF37115.1| DNA polymerase I [Streptococcus pyogenes MGAS10750] Length = 880 Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 195/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521 ++ K K++L GI + D L +Y+L S +++++IA+ + + +E Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + + EH V+L + KL + L +Y+ ++ P+ +V++ Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI++++ L+ ++ + + +L + IYD++G++FN++SPKQLG ILF K++ P Sbjct: 489 KMEIEGIKVNRTTLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ++K++STY L ++I ++HT Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F DIH A +FG++ V+ RR+AK +NF I+YGIS F L+ Sbjct: 668 ISGDKHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF R+PGI Y+E + GYVET+F RR +INS ++ Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ K+L+ KMLLQ+HDE+V EVP +E+T Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A ++L VPL V+ +W E Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878 Score = 187 bits (475), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 116/304 (38%), Positives = 167/304 (54%), Gaps = 23/304 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K PE Q P +R A GI E++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTAAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKTSKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286 +EN++ + A LS+ L + T PITI L+ ++ NGP + S F ++F +L Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291 Query: 287 RVAT 290 +A+ Sbjct: 292 GLAS 295 >gi|225855819|ref|YP_002737330.1| DNA polymerase I [Streptococcus pneumoniae P1031] gi|225725792|gb|ACO21644.1| DNA polymerase I (POL I) [Streptococcus pneumoniae P1031] Length = 877 Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782] gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782] Length = 880 Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 196/515 (38%), Positives = 308/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW--LSYTRKEIL-- 521 ++ K K++L GI + D L +Y+L S +++++IA+ + +S +I+ Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDIVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + + EH V+L + KL + L +Y+ ++ P+ +V++ Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI++++ L+ ++ + + +L + IYD++G++FN++SPKQLG ILF K++ P Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ++K++STY L ++I ++HT Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F DIH A +FG++ V+ RR+AK +NF I+YGIS F L+ Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF R+PGI Y+E + GYVET+F RR +INS ++ Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ K+L+ KMLLQ+HDE+V EVP +E+T Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A ++L VPL V+ +W E Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878 Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 167/304 (54%), Gaps = 23/304 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K P+ Q P +R A GI E++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286 +EN++ + A LS+ L + T PITI L+ ++ NGP + S F ++F +L Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPEVASLSQFYDEMDFVQLKK 291 Query: 287 RVAT 290 +A+ Sbjct: 292 GLAS 295 >gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus pneumoniae TIGR4] gi|111656974|ref|ZP_01407784.1| hypothetical protein SpneT_02001792 [Streptococcus pneumoniae TIGR4] gi|27734651|sp|P59199|DPO1_STRPN RecName: Full=DNA polymerase I; Short=POL I gi|14971495|gb|AAK74222.1| DNA polymerase I [Streptococcus pneumoniae TIGR4] Length = 877 Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI ++ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYDLAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|229824800|ref|ZP_04450869.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC 49176] gi|229790803|gb|EEP26917.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC 49176] Length = 961 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 179/433 (41%), Positives = 271/433 (62%), Gaps = 11/433 (2%) Query: 544 ENSNVILQLWLLLRPKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 EN + LL PKLI E + ++Y+ ++ P++ + +ME GI+++++ L + S Sbjct: 532 ENPEFTARAALLSAPKLISELSNLGMENLYKEIEMPLVSTLYEMEERGIKLNKEELHEYS 591 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 E+ + + EE IY ++GE+FN++SPKQLG ILF KL+ P G KTKTG + T+A LE+ Sbjct: 592 EELDVLIKNYEEEIYKMAGEEFNINSPKQLGVILFEKLRLPYGKKTKTG-YSTSADVLER 650 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 I D PI++ +L +RQ++K+KSTY D L ++ K R+H + T TGRL+S EPN Sbjct: 651 IRLED-PIVERVLNYRQVAKLKSTYTDGLEGYV-KEDGRIHCKLNQLVTATGRLSSTEPN 708 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPI+ +LG++IR+AF+ + ADYSQIELRI+AH++ L + ++ DIHR Sbjct: 709 LQNIPIRMELGKRIRKAFVPKEGYVFVDADYSQIELRIMAHLSGDEELIKAYQGEEDIHR 768 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 + A+ +FGV +++V+ RR+AK +NF IIYGIS F L L I R +A YI YF + Sbjct: 769 ITASHVFGVPLDEVTDLQRRNAKAVNFGIIYGISSFGLGENLGISRKDAEKYINDYFKAY 828 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 P + +Y++ + G+V+T FGR E+NS R ER A+N+P+QG+AADI Sbjct: 829 PQVKKYLDSLVETGIEKGFVKTYFGRIRPIPELNSNNFMKRQFGERIAMNSPVQGTAADI 888 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + AM SV+ L+ +++LLQIHDEL+ E EE+ ++++ M KA L+ Sbjct: 889 IKIAMNSVNARLKSEFPDSRLLLQIHDELLIEAKEEDKEAVAKLLKEEMMKAA----ELK 944 Query: 960 VPLKVNIKVSNNW 972 V L V++K NW Sbjct: 945 VKLSVDVKFGYNW 957 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 107/355 (30%), Positives = 152/355 (42%), Gaps = 85/355 (23%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRK--------------------HDGLPVNAIAGFC 42 K N+L L+DGSS + F+ + L R+ DG N + GF Sbjct: 2 KNNYLLLIDGSSLLSTQFFGS--LPRQILFAKTIEEKEKYYDKILQTADGFYTNGVFGFV 59 Query: 43 NMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLAT 102 L K++ +E SH A+ +D TFR EIYPDYK NR + L Q + + Sbjct: 60 KYLLKII----REQKPSHIAIAWDLSRDTFRREIYPDYKGNRVETMAPLSDQFAICQEVV 115 Query: 103 QAFGIPAIEIQGFEADDIIATYTYIAE--KEGFAVTIISTDKDLMQLVS----------- 149 +AFGI FEADD T +AE K V I++ D D +QLV Sbjct: 116 KAFGIAQFMSGTFEADDFCGT---LAEKFKSEIPVFIMTKDNDYLQLVDDKIKLWLMHGT 172 Query: 150 --PTTCLYDTVKEEK-----------IDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGI 196 T LY +K D E + K++G+ PE + L+ + GD+ DNI G+ Sbjct: 173 AEKTDELYKKYGIDKSKVNAPDRCFVYDKELIKKEFGVEPENVNSLKGIMGDASDNIKGV 232 Query: 197 PGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI--------------LEY------ 236 PG+G TA LL+ +Y ++ L A K KK + I L Y Sbjct: 233 PGVGEATARLLIGKYHTVDE-LYKAINNKDKKELDEIKKAWKEELGINRSPLSYLLKTSD 291 Query: 237 -----AETARLSRKLVMLRTDVPIT-IPLEHLILE-DCNGPRLISFLKALEFTKL 284 ++ARLS +L ++ D+ T + L L D G I +KALEF + Sbjct: 292 TELVGEKSARLSEQLATIKKDIDTTGVELSDLTANIDFEGGAKI--IKALEFNSV 344 >gi|167768074|ref|ZP_02440127.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1] gi|167710403|gb|EDS20982.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1] Length = 909 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 184/490 (37%), Positives = 300/490 (61%), Gaps = 11/490 (2%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIE 544 D+ L +Y+++ +S+++ IA+ + S ++KE++ + + +SD+ + E Sbjct: 426 DVSLAAYLVNPLKSTYEYDDIARDYKSMMLPSKKELIDKKHPMVTDGVLSDAGKKIMGYE 485 Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 + + + L KL +++ +Y ++ P + + ME+ GI +D LK ++ Sbjct: 486 -AYISREAIQPLSDKLTELEMMDLYREIEIPTMFALHDMEVRGIHVDSKALKGYGDQLVG 544 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664 + L+E+IY +GE+FN++SPKQLG +LF +K KTKTG + T+ + LE+I Sbjct: 545 RIEELQESIYKEAGEEFNINSPKQLGVVLFDHMKLEGAKKTKTG-YSTSVEVLEKIEHL- 602 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 PII ILE+RQL+K+KSTYAD L N I + QR+H ++ T TGR++S EPNLQNIP Sbjct: 603 YPIIPMILEYRQLTKLKSTYADGLANFI-QDDQRIHGKFNQTITATGRISSTEPNLQNIP 661 Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 I+ +LG+ IR+ F+ + ADYSQIELR+LAH+++ L +E + DIH A+E Sbjct: 662 IRMELGRAIRKVFLPEEGYIFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTASE 721 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +FG+ +++V+ RR AK +NF IIYG+S F L+ L+I R +A +YI RYF +P + E Sbjct: 722 VFGIPMDEVTSTQRRDAKAVNFGIIYGLSAFGLSQDLKISRKQAQEYIDRYFAMYPRVKE 781 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 +++ + +GYV+T+F R E+ S RN ER A+N+PIQG+AADI + AM Sbjct: 782 FLDGEVEKGKTDGYVKTMFNRIRPIPELKSSNFMQRNFGERVAMNSPIQGTAADIIKIAM 841 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 + V+ L++ ++ +++LLQIHDEL+ E +E +I+ + M A ++LRVPL + Sbjct: 842 VRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFEEVKEILQNEMMNA----VSLRVPLNI 897 Query: 965 NIKVSNNWQE 974 +I+ +W E Sbjct: 898 DIEQGASWYE 907 Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 106/288 (36%), Positives = 170/288 (59%), Gaps = 13/288 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG+S + RAFY P ++ GL NAI GF N+++K L+ E +H AV FD Sbjct: 35 LLLIDGNSILNRAFYGLPDMTNSQ-GLHTNAILGFLNIMFKFLE----EENPTHLAVAFD 89 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++++ DYK R +P+ L Q+P++R +A IP + +G+EADD++ T + Sbjct: 90 LKAPTFRHKMFADYKGTRKGMPDELQEQVPVIREVLKAMNIPLMMEEGYEADDLLGTMSV 149 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 + E+ GF V I+S D+DL+QL + P T TV E+ + + V++K+ + P++ Sbjct: 150 LGEQAGFEVKIVSGDRDLLQLATKKVQIRIPKTNRAGTVVEDYYE-DDVLEKYQVTPKEF 208 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DNIPGIPGIG KTA L++E+ ++EN + +K + + N+ EY + Sbjct: 209 IDVKALMGDTSDNIPGIPGIGEKTATKLIKEFQSIENAYAHIDEVKPNRAKNNLQEYYDQ 268 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 +S++L ++ D PI I + L D LK LEF ++ R Sbjct: 269 GVMSKELATIKLDSPIDISFDDAKLGDLYTKEAYHMLKELEFKAILKR 316 >gi|194397391|ref|YP_002036753.1| DNA polymerase I [Streptococcus pneumoniae G54] gi|194357058|gb|ACF55506.1| DNA polymerase I [Streptococcus pneumoniae G54] Length = 877 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 112/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL EYG+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEYGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|303260832|ref|ZP_07346781.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292] gi|302637669|gb|EFL68155.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292] Length = 887 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI ++ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLNHMGIRHYDLAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|149010895|ref|ZP_01832200.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75] gi|221230982|ref|YP_002510134.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669] gi|147764531|gb|EDK71461.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75] gi|220673442|emb|CAR67908.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669] Length = 877 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLSQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYLQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 111/285 (38%), Positives = 153/285 (53%), Gaps = 11/285 (3%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSRKHD--GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DGSS +RAF+A L R + GL NAI GF ML LL+ SH V Sbjct: 6 LLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSHILV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDII T Sbjct: 62 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P + Sbjct: 122 LDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPAQF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ E Sbjct: 182 IDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDKEQ 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 242 AFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99] Length = 875 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 216/627 (34%), Positives = 333/627 (53%), Gaps = 62/627 (9%) Query: 383 KLETIGSASFKIITDTMDAFHSKPIA----IAISTLDQKDDTSFKVETIFIDLSVHTSQD 438 K+E S F+ + D MD A + + + + D T I ++++ Sbjct: 270 KIELFKSLEFRQLLDGMDVEADNATASRDFVPTTNMSKVDFTQLSEAAIHVEVA------ 323 Query: 439 STGKNTLTKEILSY---------------------LKKFFENEHFLKIGHNIKYDKLVLH 477 G N L E+L + L + E+E K H+ K + + Sbjct: 324 --GPNYLKDELLKFGLYDGEQYVVIPFDKVNEYPELVAWLEDETTQKWVHDAKKTYIAMK 381 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW-LSYTRKEIL---KSRKSSIPIDK 532 R I++ D ML SY++D R+ D+ S+ + ++ + ++ K + IP D Sbjct: 382 RSDIAIENVVFDTMLASYIIDPSRTIEDVQSVMTHFDQTFVQDDVSVYGKGKSFHIPEDD 441 Query: 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER------LDKPMIDVVSQMEIT 586 I D + IL +++P+++ +L +E+ ++ P+ ++S+ME Sbjct: 442 ILDKHIAS--------ILDAIHVVQPQMMT--ILEAHEQTSLLSEIELPLALILSEMEYI 491 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 GI D D LK++ I L L E I++ +GEKFN++SPKQLG ILF KL+ P KTK Sbjct: 492 GIHTDIDTLKEMETVIQTELDQLIEQIHEQAGEKFNINSPKQLGVILFEKLELPVIKKTK 551 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 TG + T LE++ +PII NIL +R LSK++STY + L I R+HT ++ Sbjct: 552 TG-YSTAVDVLEKLQNA-HPIIDNILTYRTLSKLQSTYVEGLQKVIWDDG-RIHTRFNQT 608 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKIT 765 TGRL+S++PNLQNIPI+ + G+KIR+AF S +I +ADYSQIELR+LAHI Sbjct: 609 LAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKSTHEDYVILAADYSQIELRVLAHITGDP 668 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L Q F ++ D+H A ++F V +V+ MRR AK +NF I+YGIS + L+ L I R Sbjct: 669 TLQQAFNDNEDVHTTTAMKVFNVAAGEVTSLMRRQAKAVNFGIVYGISDYGLSQSLGITR 728 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA +I Y + FPG+ +Y++ +Q GYVET+ RR + +I S ++R ER Sbjct: 729 KEAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNLRGFAER 788 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 A+N+PIQGSAADI + AM+ H+ ++ ++LLQ+HDEL+FEVP++E+ + + Sbjct: 789 TAMNSPIQGSAADIIKLAMVQFHREVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVE 848 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972 M A + L VPL V W Sbjct: 849 EIMAHA----LQLDVPLSVESDYGKTW 871 Score = 191 bits (484), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 109/301 (36%), Positives = 165/301 (54%), Gaps = 13/301 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG+S +RAFYA PLL K G+ NA+ GF +L K++ KE +HF V Sbjct: 2 DKLILIDGNSLSFRAFYALPLLKNKA-GIHTNAVYGFARLLEKII----KEEQPTHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y DYK R K P L Q P +R A+ I E++ +EADDII T Sbjct: 57 FDAGKTTFRHETYQDYKGGRQKTPPELSEQFPYIRQLIDAYQIQRYELENYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178 + A++ G II+ D+DL QL + +Y T K+ D++H ++ G+ P + Sbjct: 117 SREADQAGMQTIIITGDRDLTQLATDQVTIYYT-KKGVTDVDHYTPQFIAEKYNGLKPSQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ L+ L GDS DNIPG+ G+G KTA LL ++G +E + + + KK +E + + Sbjct: 176 IIDLKGLMGDSSDNIPGVAGVGEKTAMKLLNQFGTVEGVYDHIEEVSGKKLKEKLENSRD 235 Query: 239 TARLSRKLVMLRTDVPITIPLEHLIL-EDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A +S+ L + D PIT+ LE L + + I K+LEF +L++ + D A Sbjct: 236 DALMSKTLATINCDSPITVSLEDTRLPQKMDESAKIELFKSLEFRQLLDGMDVEADNATA 295 Query: 298 N 298 + Sbjct: 296 S 296 >gi|296875409|ref|ZP_06899483.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 15912] gi|296433602|gb|EFH19375.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 15912] Length = 881 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 209/539 (38%), Positives = 319/539 (59%), Gaps = 39/539 (7%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYVLDSGRSSHDIASIAQ 510 K+F E LK+ ++ K K++L GI+++ F D L Y+L S ++I++IA Sbjct: 363 FKEFLEKTP-LKV-YDFKRAKVLLSHLGITLQNPAF-DSRLAKYLL-STVEDNEISTIAS 418 Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ-----LWLLLRPKLIVEKL 565 + + ++P+D++ + + AI V+L+ + +LL + + + Sbjct: 419 LY-----------SQIALPLDEVVYGKGVKRAIPERAVLLEHLALKVAVLLDTEEPMVEQ 467 Query: 566 LHVYERLD------KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 L +++LD +P+ V+++MEI GI++++ L+ + E L L + IY+L+GE Sbjct: 468 LQAHDQLDLLYDMEQPLAAVLAKMEIAGIKVERQTLEDMQVENEVVLERLTQEIYELAGE 527 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 +FN++SPKQLG ILF KL+ P KT +TA D+ + PI+ ILE+RQ++K Sbjct: 528 EFNINSPKQLGVILFEKLELPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAK 587 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 I+STY L + I + ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ Sbjct: 588 IQSTYVIGLQDWILE-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVP 646 Query: 740 PPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK---VSP 795 L+S+DYSQIELR+LAHI+ L F++ DIH A +F NIEK V+P Sbjct: 647 EEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVF--NIEKPEDVTP 704 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 RR+AK +NF ++YGIS F L+ L I R EA YI+ YF R+PGI +Y+E+ R Sbjct: 705 NDRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARD 764 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GYVET+F RR +INS ++R ER AIN+PIQGSAADI + AMI + ++LE Sbjct: 765 KGYVETLFKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALEAGA 824 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 TKMLLQ+HDE+V +VP +E+ +++ +ME A I L VPL+ + W E Sbjct: 825 YKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESA----IELAVPLEADENEGKTWYE 879 Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 117/328 (35%), Positives = 167/328 (50%), Gaps = 17/328 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M+K+N L L+DGSS +RAF+A + R +GL NA+ GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFALYHQIDRFKNANGLHTNAVYGFNLMLSHLLERIQ---- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EA Sbjct: 57 PTHVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIREQLDHLGIRHYELAQYEA 116 Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171 DDII T +AE F VTI+S DKDL+QL T + + K E+ ++ +K Sbjct: 117 DDIIGTLDKMAETTSVPFDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLKEK 176 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 G+ PE+ + L+AL GD DNIPG+ IG KT LL +YG+L+ I + +K K +E Sbjct: 177 MGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLKYGSLDGIYEHIDEMKASKMKE 236 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 N++ E A LS+ L + T+ PI I L+ + + L F + + F +L + Sbjct: 237 NLINDKEQAYLSKTLATIDTNAPIEIGLDDITYTGPHLENLAKFYEEMGFKQLRQAL--- 293 Query: 292 YDCDAANIEPVVLDINTTENKGIAIETE 319 D PV +D E + TE Sbjct: 294 -DLSGEEAAPVAIDYTEVEQVASDMLTE 320 >gi|148996437|ref|ZP_01824155.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70] gi|168576933|ref|ZP_02722775.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016] gi|225860073|ref|YP_002741582.1| DNA polymerase I [Streptococcus pneumoniae Taiwan19F-14] gi|298230353|ref|ZP_06964034.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255493|ref|ZP_06979079.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501821|ref|YP_003723761.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|147757012|gb|EDK64051.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70] gi|183577415|gb|EDT97943.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016] gi|225728406|gb|ACO24257.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Taiwan19F-14] gi|298237416|gb|ADI68547.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|327390446|gb|EGE88786.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04375] Length = 877 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|225857894|ref|YP_002739404.1| DNA polymerase I [Streptococcus pneumoniae 70585] gi|225720032|gb|ACO15886.1| DNA polymerase I (POL I) [Streptococcus pneumoniae 70585] Length = 877 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 IKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo] gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo] Length = 880 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 195/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521 ++ K K++L GI + D L +Y+L S +++++IA+ + + +E Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + + EH V+L + KL + L +Y+ ++ P+ +V++ Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI++++ L+ ++ + + +L + IYD++G++FN++SPKQLG ILF K++ P Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ++K++STY L ++I ++HT Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F DIH A +FG++ V+ RR+AK +NF I+YGIS F L+ Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF R+PGI Y+E + GYVET+F RR +INS ++ Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ K+L+ KMLLQ+HDE+V EVP +E+T Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A ++L VPL V+ +W E Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 116/304 (38%), Positives = 167/304 (54%), Gaps = 23/304 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ R Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVR-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K P+ Q P +R A GI E++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286 +EN++ + A LS+ L + T PITI L+ ++ NGP + S F ++F +L Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291 Query: 287 RVAT 290 +A+ Sbjct: 292 GLAS 295 >gi|290581196|ref|YP_003485588.1| DNA polymerase I [Streptococcus mutans NN2025] gi|254998095|dbj|BAH88696.1| DNA polymerase I [Streptococcus mutans NN2025] Length = 878 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 202/516 (39%), Positives = 304/516 (58%), Gaps = 19/516 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL- 521 ++ K K++L GI + D L Y+L S +++I++IA+ + T ++ Sbjct: 372 YDFKRGKVLLSHLGIDLLTASFDSRLAKYLL-STVENNNISTIARLYTDLPLETDDDVYG 430 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + + H + +V+L +R KL L + ++ P+ +V++ Sbjct: 431 KGAKRAIPEKNV----LLSHLAKKISVLLASEEPMRQKLSANDQLDLLFEMELPLANVLA 486 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L+ + L +L + IYDL+GE FN++SPKQLG ILF KL P Sbjct: 487 KMEIAGISVRKETLQDMERANEIELQALTQEIYDLAGEAFNINSPKQLGVILFEKLGLPL 546 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 A KT +TA D+ + +PI+ ILE+RQ++K++STY L + I+ ++HT Sbjct: 547 SATKKTKTGYSTAVDVLERLAHRSPIVAKILEYRQIAKLQSTYIIGLQDSIS-FDGKIHT 605 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILA 759 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ P K+ L+S+DYSQIELR+LA Sbjct: 606 RYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PEWKESVLLSSDYSQIELRVLA 664 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLA 818 HI+ L F+ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 665 HISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDFGLA 724 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 L I R A +YI+ YF R+PGI Y+++ R GYVET+F RR +INS + Sbjct: 725 NNLGISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFN 784 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 IR+ ER AIN+PIQGSAADI + AMI + ++L+ ++MLLQ+HDE+V EVP E+ Sbjct: 785 IRSFAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELE 844 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A I L VPL + W E Sbjct: 845 AIQKLVKETMESA----IELSVPLVADENAGQTWYE 876 Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 113/288 (39%), Positives = 160/288 (55%), Gaps = 21/288 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M + L L+DGSS YRAF+A L + D GL NAI GF ML ++ K Sbjct: 1 MTNKKKLLLIDGSSVAYRAFFA---LYNQIDRFKNPAGLHTNAIYGFHLMLDHMM----K 53 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E++ DYKA R K PE QLP +R A G+ +++ Sbjct: 54 RVEPTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLTALGVSYYDLEN 113 Query: 115 FEADDIIATYTYIAEKE-GFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 +EADDII T +AE E + VTI+S DKDL+QL T + + K E+ ++++ Sbjct: 114 YEADDIIGTLDKLAENEDAYDVTIVSGDKDLIQLTDSNTTVEISKKGVAEFEEFTPDYLM 173 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P++ + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K Sbjct: 174 EKMGLTPKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEHGSLEAIYEHIDSFKTTKM 233 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277 +EN++ E A LS+ L + T PITI L+ + D +GP+L + +K Sbjct: 234 KENLINDKEKAFLSKTLATIDTQAPITITLDDI---DYSGPQLDALVK 278 >gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270] gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270] Length = 880 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 195/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521 ++ K K++L GI + D L +Y+L S +++++IA+ + + +E Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + + EH V+L + KL + L +Y+ ++ P+ +V++ Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI++++ L+ ++ + + +L + IYD++G++FN++SPKQLG ILF K++ P Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ++K++STY L ++I ++HT Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F DIH A +FG++ V+ RR+AK +NF I+YGIS F L+ Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF R+PGI Y+E + GYVET+F RR +INS ++ Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ K+L+ KMLLQ+HDE+V EVP +E+T Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A ++L VPL V+ +W E Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 167/304 (54%), Gaps = 23/304 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K P+ Q P +R A GI E++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286 +EN++ + A LS+ L + T PITI L+ ++ NGP + S F ++F +L Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291 Query: 287 RVAT 290 +A+ Sbjct: 292 GLAS 295 >gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 914 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 196/507 (38%), Positives = 304/507 (59%), Gaps = 8/507 (1%) Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528 I Y+ L GIS + M+++Y L S ++ D IA S + K+ + Sbjct: 413 ISYNFKALLNLGISFKSMYMDMMIAYHLISSQTKID-PIIAITEYSKLEPKDFKATFGKV 471 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 ++ I+ ++ + S IL ++ L L E L V + P+I V+S ME GI Sbjct: 472 NVELITTQDFSKYLSDISIGILAIYDELNYLLKKEDLYKVLMENEMPLIPVLSLMERKGI 531 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +ID K S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF K+ PSG KTKTG Sbjct: 532 EIDVQYFKNYSVELDKELLRIEKAIYEEAGEEFNINSPKQLGDILFVKMNLPSGKKTKTG 591 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T LE + I + +L++R+L+K+K+TY D+LP +++ + R+HT ++ T Sbjct: 592 -YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTSFNQIGT 649 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP+KTD G KIR FI+ K L+S DYSQ+ELR+L ++K L Sbjct: 650 ATGRLSSSDPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLI 709 Query: 769 QVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + + D+H + A IF + + E VS + R AK INFSIIYG +PF LA +L+IP + Sbjct: 710 EAYREEKDLHDLTARRIFNLADSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKD 769 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A++YIK+YF ++P + + ++ F ++GYV+T+FGR+ + I+S +I++ ER A Sbjct: 770 ASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMA 829 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +N IQG+AA++ ++ M+ V+ L+D K +LLQ+HDEL+FEV + + S+I+ Sbjct: 830 VNTVIQGTAAEVLKKVMVKVYDVLKD-KEDIALLLQVHDELIFEVEKSSVEKYSEILADI 888 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ + V L +NI + NW E Sbjct: 889 MKNTVQLE---DVKLNININIGKNWAE 912 Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/293 (31%), Positives = 146/293 (49%), Gaps = 18/293 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+D S+ +YRA++A K++ P A+ GF N L ++ + + +A+ F V Sbjct: 6 LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINEFKPDYMAAAFDV---KR 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 + R EIY DYK+NR PE L+ Q+P + AF I +I+G+EADD++ + Sbjct: 61 SSLKRTEIYSDYKSNRQSAPEDLITQIPRIEEVLDAFNINRYKIEGYEADDVLGSLAKKL 120 Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKI----DIEHVIKKWGIPPEKMVC 181 K+ V I++ DKDL QLV L + EK + + V+ G+ PEK+ Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGAEGEKFGTLKNSDDVVNYLGVVPEKIPD 180 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236 L L GD D IPG+ IG K A + +Y +LE I N +K +N++ Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYENIDNLKSIDGIGPSLIKNLINE 240 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 + A +SR+L + T++ I + E + + RL S KALEF I ++ Sbjct: 241 KDIAFMSRELAKIFTNLDIDVE-ESGLQYGMDRERLYSLCKALEFKMFIKKLG 292 >gi|329769116|ref|ZP_08260537.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325] gi|328839462|gb|EGF89039.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325] Length = 879 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 194/492 (39%), Positives = 297/492 (60%), Gaps = 17/492 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLS---YTRKEIL-KSRKSSIPIDKISDSQVQEHAI 543 DI + +Y++D S +I I +L + +EI K K S+P ++ +S + + A Sbjct: 398 DIKIANYLIDV-TSKSEIDKIVFNYLGEIISSNEEIYGKGAKRSLPTQEVLNSYIAKIAA 456 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 IL++ L+ L E +L +Y+ ++ + V++ ME GI + + L ++S E Sbjct: 457 S----ILEVKPLMIKSLEEENMLDLYKNIEIKVARVLANMEFEGIHVSKKALDEMSHEFD 512 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + + LE +IY L+G +FN++SPKQLG +LF L P KTKTG + T + LEQ+ Sbjct: 513 ERIKVLEGSIYTLAGSEFNIASPKQLGVVLFEDLGLPVVKKTKTG-YSTAVEVLEQLQY- 570 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 + II I+E+R L+K+ STYA L I R ++HT Y T TGRL+S+ PNLQNI Sbjct: 571 KHDIIPLIMEYRTLTKLNSTYAKGLVKDIT-REGKIHTRYEQTLTQTGRLSSVNPNLQNI 629 Query: 724 PIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 P + + G+KIR+AFI ++I S DYSQIELR+LAHIA+ + F++ +DIH A Sbjct: 630 PTRIEEGKKIRKAFIPASNDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTA 689 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +++ GV +++V+P MRR AK +NF I+YGIS F L+ L I R A ++I++Y F G+ Sbjct: 690 SDVNGVPLDEVTPTMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIEKYLETFKGV 749 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y+ F +++GYVET++ RR EIN+ I N+N R A+N PIQG+AADI + Sbjct: 750 DKYMTDIVKFAKEHGYVETLYNRRRSLPEINAKNKIIANLNARIAMNTPIQGTAADIIKI 809 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMIS + +E+ K+ K+LLQ+HDEL+F+V ++ + + +V ME+A NL V L Sbjct: 810 AMISAYNYIEESKVDAKLLLQVHDELIFDVSKDILEEFTDKMVAIMEEAA----NLDVKL 865 Query: 963 KVNIKVSNNWQE 974 K +W E Sbjct: 866 KAEASSGPSWYE 877 Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 116/289 (40%), Positives = 167/289 (57%), Gaps = 10/289 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + + L+DG+S YRAFYA P L K GL N++ GF ML ++L++++ + V Sbjct: 2 DKIILLDGNSLSYRAFYAMPALKNKK-GLYTNSVYGFTLMLERILEDTK----PKYALVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR++ Y YK R K P L+ Q VR +++GI E +EADDII +Y Sbjct: 57 FDKGKETFRHKSYEAYKGTRDKTPTELVEQFGYVRELIESYGIKYEEHLDYEADDIIGSY 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-EKIDI---EHVIKKWGIPPEKMV 180 IAEK G V I+S DKDL QL S +Y T + +ID E + +K+G+ P++++ Sbjct: 117 AKIAEKAGLEVIIVSGDKDLTQLASDNITVYYTKRGVTEIDYYTPEFINEKYGLTPQQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++ L GD DNIPGIPG+G KTA LL EY N+EN+L N I KK +E + E E A Sbjct: 177 DMKGLMGDKSDNIPGIPGVGEKTAIKLLTEYENVENVLENIDNISGKKLKERLTEGKEDA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 LS+KL + TDVP+ +E L ++ + F K LEF + +++ Sbjct: 237 ILSKKLATIFTDVPVDNKIEDLTFKEDREKKKELFEK-LEFVSFLRKLS 284 >gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315] gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1] gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315] gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus pyogenes SSI-1] Length = 880 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 195/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521 ++ K K++L GI + D L +Y+L S +++++IA+ + + +E Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + + EH V+L + KL + L +Y+ ++ P+ +V++ Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI++++ L+ ++ + + +L + IYD++G++FN++SPKQLG ILF K++ P Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ++K++STY L ++I ++HT Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F DIH A +FG++ V+ RR+AK +NF I+YGIS F L+ Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF R+PGI Y+E + GYVET+F RR +INS ++ Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ K+L+ KMLLQ+HDE+V EVP +E+T Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A ++L VPL V+ +W E Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 114/304 (37%), Positives = 167/304 (54%), Gaps = 23/304 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K P+ Q P +R A GI E++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P + + L+AL GD DNIPG+ IG KT LL ++G+LE I + K K Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHKFGSLEGIYEHIDGFKASKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286 +EN++ + A LS+ L + T PITI L+ ++ NGP + S F ++F +L Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291 Query: 287 RVAT 290 +A+ Sbjct: 292 GLAS 295 >gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180] gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180] Length = 880 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 195/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521 ++ K K++L GI + D L +Y+L S +++++IA+ + + +E Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + + EH V+L + KL + L +Y+ ++ P+ +V++ Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI++++ L+ ++ + + +L + IYD++G++FN++SPKQLG ILF K++ P Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ++K++STY L ++I ++HT Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F DIH A +FG++ V+ RR+AK +NF I+YGIS F L+ Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF R+PGI Y+E + GYVET+F RR +INS ++ Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ K+L+ KMLLQ+HDE+V EVP +E+T Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A ++L VPL V+ +W E Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 116/304 (38%), Positives = 167/304 (54%), Gaps = 23/304 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K PE Q P +R A GI E++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286 +EN++ + A LS+ L + T PITI L+ ++ NGP + S F ++F +L Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291 Query: 287 RVAT 290 +A+ Sbjct: 292 GLAS 295 >gi|149023472|ref|ZP_01836061.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72] gi|147929795|gb|EDK80785.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72] Length = 877 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 IKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELMDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|24378800|ref|NP_720755.1| DNA polymerase I [Streptococcus mutans UA159] gi|24376673|gb|AAN58061.1|AE014878_7 DNA polymerase I (POL I) [Streptococcus mutans UA159] Length = 878 Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 202/516 (39%), Positives = 304/516 (58%), Gaps = 19/516 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEIL- 521 ++ K K++L GI + D L Y+L S +++I++IA+ + T ++ Sbjct: 372 YDFKRGKVLLSHLGIDLPTASFDSRLAKYLL-STVENNNISTIARLYTDLPLETDDDVYG 430 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + + H + +V+L +R KL L + ++ P+ +V++ Sbjct: 431 KGAKRAIPEKNV----LLSHLAKKISVLLASEEPMRQKLSANDQLDLLFEMELPLANVLA 486 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L+ + L +L + IYDL+GE FN++SPKQLG ILF KL P Sbjct: 487 KMEIAGISVRKETLQDMERANEIELQALTQEIYDLAGEAFNINSPKQLGVILFEKLGLPL 546 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 A KT +TA D+ + +PI+ ILE+RQ++K++STY L + I+ ++HT Sbjct: 547 SATKKTKTGYSTAVDVLERLAHRSPIVAKILEYRQIAKLQSTYIIGLQDSIS-FDGKIHT 605 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILA 759 Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ P K+ L+S+DYSQIELR+LA Sbjct: 606 RYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PEWKESVLLSSDYSQIELRVLA 664 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLA 818 HI+ L F+ DIH A +FG+ E V+P RR+AK +NF ++YGIS F LA Sbjct: 665 HISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGISDFGLA 724 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 L I R A +YI+ YF R+PGI Y+++ R GYVET+F RR +INS + Sbjct: 725 NNLGISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDINSRNFN 784 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 IR+ ER AIN+PIQGSAADI + AMI + ++L+ ++MLLQ+HDE+V EVP E+ Sbjct: 785 IRSFAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEVPNAELE 844 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A I L VPL + W E Sbjct: 845 AIQKLVKETMESA----IELSVPLVADENAGQTWYE 876 Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 113/288 (39%), Positives = 159/288 (55%), Gaps = 21/288 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRK 54 M + L L+DGSS YRAF+A L + D GL NAI GF ML ++ K Sbjct: 1 MTNKKKLLLIDGSSVAYRAFFA---LYNQIDRFKNPAGLHTNAIYGFHLMLDHMM----K 53 Query: 55 ESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +H V FD TFR E++ DYKA R K PE QLP +R A G+ +++ Sbjct: 54 RVEPTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLTALGVSYYDLEN 113 Query: 115 FEADDIIATYTYIAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 +EADDII T +AE E + VTI+S DKDL+QL T + + K E+ ++++ Sbjct: 114 YEADDIIGTLDKLAENEDEYDVTIVSGDKDLIQLTDSNTTVEISKKGVAEFEEFTPDYLM 173 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P++ + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K Sbjct: 174 EKMGLTPKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEHGSLEAIYEHIDSFKTTKM 233 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277 +EN++ E A LS+ L + T PITI L+ + D +GP+L + K Sbjct: 234 KENLINDKEKAFLSKTLATIDTQAPITITLDDI---DYSGPQLDALAK 278 >gi|303267612|ref|ZP_07353453.1| DNA polymerase I [Streptococcus pneumoniae BS457] gi|302642862|gb|EFL73168.1| DNA polymerase I [Streptococcus pneumoniae BS457] Length = 575 Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 69 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 127 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 128 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 183 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 184 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 243 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 244 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 302 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 303 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 362 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 363 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 422 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 423 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 482 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 483 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 542 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 543 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 573 >gi|255281096|ref|ZP_05345651.1| DNA polymerase I [Bryantella formatexigens DSM 14469] gi|255268544|gb|EET61749.1| DNA polymerase I [Bryantella formatexigens DSM 14469] Length = 880 Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 184/510 (36%), Positives = 300/510 (58%), Gaps = 18/510 (3%) Query: 472 DKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK---SS 527 ++L R GIS R D + +Y+L+ + + IA+ + S ++K R Sbjct: 380 EQLAFLRAGISDRAKIADAAIGAYLLNPLKGQYPCEDIAKDYASL----MIKGRAELFGK 435 Query: 528 IPIDKISDSQVQE---HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 P+ K+ + Q +E +A + ++ KL ++L ++ ++ P++ + M+ Sbjct: 436 APLAKVMEEQPEELAQYACYLAYTAKAAMPVILQKLRENQMLELFRDMEMPLVYTLYDMQ 495 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 GI+++ LK E+ ++ LE+ IY +GE+FN++SPKQLG ILF KLK P K Sbjct: 496 EVGIRVNAQELKAYGEELYVRIVELEQEIYRDAGEEFNINSPKQLGVILFEKLKLPGAKK 555 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TK+G + T A LE++ D I+ ILE+RQL+K+KSTYAD L I R+H ++ Sbjct: 556 TKSG-FSTAADVLEKL-APDYAIVAKILEYRQLAKLKSTYADGLAGFIAA-DGRIHGTFN 612 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 T TGR++S +PNLQNIP++T+LG+ +R+ FI+ LI ADYSQIELR+LA ++ Sbjct: 613 QTITATGRISSTDPNLQNIPVRTELGRLLRKVFIAKEGYVLIDADYSQIELRVLAAMSGD 672 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L F ++ DIHR+ A+++F + ++V+P RR+AK +NF I+YGIS F L+ L I Sbjct: 673 ETLIAAFRDNADIHRLTASQVFHIPFDEVTPLQRRNAKAVNFGIVYGISAFGLSEDLHIS 732 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 EA +YI +YF +P + ++++ ++ GY ET+F RR E+ S R+ E Sbjct: 733 VKEAGEYIDKYFQTYPKVKDFLDNAVKEAKEKGYAETLFHRRRPVPELKSGNFMQRSFGE 792 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R A+N+PIQG+AADI + AMI V++ L + ++++LQIHDEL+ E E+ +++ Sbjct: 793 RVAMNSPIQGTAADIIKIAMIRVNERLRAEQFQSRLILQIHDELLIEAEPSEVEAVKELL 852 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M A ++L V +++++K N+W E Sbjct: 853 AQEMVNA----VHLSVAMEIDMKTGNSWYE 878 Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 109/299 (36%), Positives = 176/299 (58%), Gaps = 15/299 (5%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + L L+DG S + RA++ P L+ GL NA+ GF N+++K+L + + +FAV Sbjct: 2 QGKLVLIDGHSILNRAYFGVPDLTNSQ-GLHTNAVYGFLNIMFKILDEEQPD----YFAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A TFR+++Y YK R + E L Q+P+++ A G+P + ++G+EADD++ T Sbjct: 57 AFDLHAPTFRHKMYDAYKGTRKPMQEELREQVPVMKEMLTAMGVPLMMLEGYEADDLLGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIE-----HVIKKWGIPPE 177 AE +G V+IIS D+DL+QL + T + K+ K +IE V++K+ + P Sbjct: 117 AAKKAEADGLTVSIISGDRDLLQLATDRTKIRIPKTKKGKTEIEDYNTAEVVEKYMVTPP 176 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 ++V L+AL GD+ DNIPGIPG+G KTA ++ EYG++EN + IK K +E++ E+ Sbjct: 177 QIVDLKALMGDASDNIPGIPGVGEKTAGKIISEYGSIENAYAHVEEIKPNKAKESLREHY 236 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + A+LS+KL + T+ P T+ +E + + K LEF ++ R + CDA Sbjct: 237 DLAQLSKKLAKINTESPFTLDMEQAKMGNLFTQEAFELCKKLEFRNILPR----FSCDA 291 >gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641] gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641] Length = 881 Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 209/539 (38%), Positives = 315/539 (58%), Gaps = 39/539 (7%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYVLDSGRSSHDIASIAQ 510 K+F E LK+ ++ K K++L GI+++ F D L Y+L S ++I++IA Sbjct: 363 FKEFLEKTP-LKV-YDFKRAKVLLSHLGITLQNPAF-DSRLAKYLL-STVEDNEISTIAS 418 Query: 511 KWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ-----LWLLLRPKLIVEKL 565 + T +P+D++ + + I V+L+ + +LL + + + Sbjct: 419 LYSQIT-----------LPLDEVVYGKGAKKIIPEKAVLLEHLARKVAVLLDTEEPMTEQ 467 Query: 566 LHVYERLD------KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 L +++LD +P+ V+++MEI GI++++ L+ + E L L + IY+L+GE Sbjct: 468 LKAHDQLDLLYDMEQPLAAVLAKMEIAGIKVERQTLQDMQVENEAVLERLTQEIYELAGE 527 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 +FN++SPKQLG ILF KL+ P KT +TA D+ + PI+ ILE+RQ++K Sbjct: 528 EFNINSPKQLGVILFEKLELPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAK 587 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 I+STY L + I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ Sbjct: 588 IQSTYVIGLQDWI-LEDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVP 646 Query: 740 PPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK---VSP 795 L+S+DYSQIELR+LAHI+ L F++ DIH A +F NIEK V+P Sbjct: 647 EEVNSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVF--NIEKPEDVTP 704 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 RR+AK +NF ++YGIS F L+ L I R EA YI+ YF R+PGI +Y+E+ R Sbjct: 705 NDRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARD 764 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GYVET+F RR +INS ++R ER AIN+PIQGSAADI + AMI + ++LE Sbjct: 765 KGYVETLFKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALEAGA 824 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 TKMLLQ+HDE+V +VP +E+ ++ +ME A I L VPL+ + W E Sbjct: 825 YKTKMLLQVHDEIVLQVPTDELAAIKALVKETMESA----IELAVPLEADENEGKTWYE 879 Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 120/321 (37%), Positives = 168/321 (52%), Gaps = 21/321 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+K+N L L+DGSS +RAF+A L + + +GL NA+ GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNANGLHTNAVYGFNLMLSHLLERIQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYK R K P+ Q P +R GI E+ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIREQLDHLGIRHYELAQY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE F VTI+S DKDL+QL T + + K E+ ++ Sbjct: 115 EADDIIGTLDKLAESTSVPFDVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLK 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ PE+ + L+AL GD DNIPG+ IG KT LL EYG+L+ I + +K K Sbjct: 175 EKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEYGSLDGIYEHIDEMKASKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 +EN++ E A LS+ L + T+ PI I L+ + + L F + + F +L R A Sbjct: 235 KENLINDKEQAYLSKTLATIDTNAPIEIGLDDITYTGPHLENLAKFYEDMGFKQL--RQA 292 Query: 290 TTYDCDAANIEPVVLDINTTE 310 +AA PV LD E Sbjct: 293 LDLSEEAAT--PVALDYTEVE 311 >gi|108563870|ref|YP_628186.1| DNA polymerase I [Helicobacter pylori HPAG1] gi|107837643|gb|ABF85512.1| DNA polymerase I [Helicobacter pylori HPAG1] Length = 899 Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 278/990 (28%), Positives = 466/990 (47%), Gaps = 118/990 (11%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ + Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKDKKN---M 61 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 + T R+E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 62 PFIVFALESQTKTKRSEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVNGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 +A LS++L L ++ C P LK + K ++T D + Sbjct: 237 DKGSAFLSKELATLERGC-----IKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLE 291 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 + P++LD N I I L + ++ N+ + + + LE Sbjct: 292 NSPT-PLILD-----NAPILDSVPI-------------LDNASALDNAPKKSRLIVLENT 332 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + LS + LE + +++ +I + K +A+A D Sbjct: 333 ELLSAF----------------------LEKLKNSNARIFMRLVLNKEKKVLALAFLYED 370 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YDK 473 Q + E +F S+ Q++ FF+ +H IGH++K Sbjct: 371 QGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHACIIGHDLKPLLS 413 Query: 474 LVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPID 531 + +Y + + +D +++++ + + D ++ +++L ++ IP + Sbjct: 414 FLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD--AVLKEYL----------KEDLIPHE 461 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEK------LLHVYERLDKPMIDVVSQMEI 585 KI D + A ++ + L+L L R EK LL + ++ P + V+ ME Sbjct: 462 KIKDFKTTSKAEKSEQLSLELNALKRLCEYFEKGGLEENLLSLARGVETPFVKVLMDMEF 521 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 G +ID K++ E L LE I DL G FNL+SPKQL ++L+ KL+ P K+ Sbjct: 522 QGFKIDAPYFKRLEQEFKDELKVLERQILDLIGVDFNLNSPKQLSEVLYEKLELPQN-KS 580 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 + K + L++ +P I ILE+R+L+K+ +TY L + + ++HT + Sbjct: 581 HSTDEKNLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTFIQ 634 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKI 764 T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+LAH ++ Sbjct: 635 TGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQD 694 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + F DIH + +FG ++ K + R AK+INF ++YG+ +L+ L I Sbjct: 695 KDLMEAFLKGRDIHLETSKALFGGDLAK---EKRSIAKSINFGLVYGMGSKKLSETLNIS 751 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 +EA YI+ YF RFP I +Y+ + K + + T+ GR +D N ++ Sbjct: 752 LNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FNGVNDYVKGNYL 810 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Q I Sbjct: 811 REGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNALELQQEI 869 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + P LRVPL+ + V+N W E Sbjct: 870 QRILNDEVYP---LRVPLETSAFVANRWNE 896 >gi|148987751|ref|ZP_01819214.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73] gi|147926215|gb|EDK77288.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73] gi|301793347|emb|CBW35710.1| DNA polymerase I [Streptococcus pneumoniae INV104] gi|332204058|gb|EGJ18123.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47901] Length = 877 Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pneumoniae R6] gi|116516654|ref|YP_815461.1| DNA polymerase I [Streptococcus pneumoniae D39] gi|27735185|sp|P59200|DPO1_STRR6 RecName: Full=DNA polymerase I; Short=POL I gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus pneumoniae R6] gi|116077230|gb|ABJ54950.1| DNA polymerase I [Streptococcus pneumoniae D39] Length = 877 Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|223984403|ref|ZP_03634542.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM 12042] gi|223963645|gb|EEF68018.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM 12042] Length = 900 Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 190/516 (36%), Positives = 309/516 (59%), Gaps = 27/516 (5%) Query: 469 IKYD-KLVLH---RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEI 520 I YD K LH G+++ G + D M+ +++ DS +S I +K+ + T E+ Sbjct: 400 IVYDVKACLHLADGAGLTINGMKIDAMIAAFLCDSTLTSDQ--KIREKFGLTETVTMDEV 457 Query: 521 L-KSRKSSIPIDKISDSQVQEH-AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 K K +P + Q+Q + +I LW PKL +++ ++ ++ P+ Sbjct: 458 YGKPGKMKLP-----EPQLQRQLCAQKIQLIDALWKDSEPKLKEMEIVSLFYDVEMPLAA 512 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V+ +ME GI+ID L ++ + L +L + IY +GE FN++SPKQLG++LF KL Sbjct: 513 VLYKMEKEGIRIDSQTLDDIARQTQARLDALTDAIYAAAGETFNINSPKQLGEVLFDKLG 572 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P+ K ++ T+A LE++ G +PII ++LE+R+ K+ STYA+ L +I+ R Sbjct: 573 LPASGKKRS----TSADVLEKL-LGVHPIIADLLEFRKYQKLYSTYAEGLKKYIHPDG-R 626 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 +HT Y+ +T TGRL+S EPNLQNI ++ + +++R+AF+ L+++DYSQIELR+L Sbjct: 627 IHTIYNQCATQTGRLSSTEPNLQNISVRDEESREVRKAFLPSEGNVLVASDYSQIELRML 686 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH+A L F +++DIH A+++F + +++V + RR AK +NF I+YGIS F L+ Sbjct: 687 AHMADEQGLLDAFRHAVDIHTKTASDVFQIPLDQVDAKHRRQAKAVNFGIVYGISDFGLS 746 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL I R++A ++I+RY +P I +Y+++ +F +++GY T+ GRR EI+ Sbjct: 747 QQLDISRAQAKEFIERYLQSYPNISKYMDQVISFCQEHGYTATMLGRRREVPEIHDKNYM 806 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 R +RAA+NAPIQGSAAD+ + AMI + K++ + L +KM+LQ+HDEL+F+ E+ Sbjct: 807 TREFGKRAAMNAPIQGSAADLIKLAMIRIDKAISEKGLQSKMILQVHDELIFDALPSELD 866 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 II ME A + L+VPL K+ + W E Sbjct: 867 ALCAIIQEGMEHA----MELKVPLVAETKIGDTWYE 898 Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 102/291 (35%), Positives = 170/291 (58%), Gaps = 17/291 (5%) Query: 7 LFLVDGSSFIYRAFYAT---PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + LVDG+S ++RAFYAT P+ + G+P NAI GF M+ K +Q + +++ V Sbjct: 34 MLLVDGNSMLFRAFYATFMRPMSTST--GIPTNAIYGFAMMINKAVQIIQPDAML----V 87 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E++ +YK R + P+ L+ Q P+VR +A GI E+ EADDII + Sbjct: 88 AFDKGKHTFRHELFAEYKGGRKETPDALVEQFPIVREYLEAAGIKQFEMTDIEADDIIGS 147 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 I + + + ++S+D+D++QL+ TT ++ K E++ +E + +K GI P+++ Sbjct: 148 M--IKKYPDWDINVLSSDRDMLQLIDETTSVWLMKKGISDIEEMTVESLKEKMGITPDQI 205 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L+ L GD+ DNIPGIP +G KTA LL+++G +EN++ N ++K K ++N+ + + Sbjct: 206 RDLKGLMGDASDNIPGIPKVGEKTALKLLEQFGTVENLIANTDQLK-GKLKDNVEAFKDQ 264 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 A LS++L ++TDV I E P L F E L ++++T Sbjct: 265 ALLSKRLATIKTDVEIPFETEEFTFHITPEP-LRQFYVRYEMNSLASKLST 314 >gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] Length = 811 Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 189/503 (37%), Positives = 297/503 (59%), Gaps = 36/503 (7%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSY----TRKEILKSRKSSIPIDKISD-------- 535 D + Y+L+ +SS+ IA+++L TR ++L +K SD Sbjct: 327 DTGVAVYLLNPLKSSYTFDDIAREYLDGALLPTRTDLLGKDSLKAAWEKSSDGLMSYACH 386 Query: 536 ----SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 + IEN+ ++W +VY ++ P+I + ME GI++ Sbjct: 387 LAYTAYATREPIENALKETEMW-------------NVYREIELPLIFTLDSMEKWGIRVK 433 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 + LK ++ + LE+ IY+ +GE+FN++SPKQLG ILF K+ P G KTKTG + Sbjct: 434 GEELKSYGEKLQVRIAELEKLIYEQAGEEFNINSPKQLGVILFEKMGIPGGRKTKTG-YS 492 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A LE++ + PI+ +ILE+RQL+K+KSTYAD L I + R+H+ ++ T TG Sbjct: 493 TAADILEKL-APEQPIVNDILEYRQLTKLKSTYADGLSAVI-EADGRIHSTFNQTITATG 550 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 R++S EPNLQNIP++ +LG+ IR+ F+ + ADYSQIELR+LAH++ L Q + Sbjct: 551 RISSTEPNLQNIPVRMELGRLIRKVFVPEDGYVFLDADYSQIELRVLAHMSGDEKLIQAY 610 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DIHR+ A+++F V ++V+ RR+AK +NF I+YGIS F L+ L I R EAA+Y Sbjct: 611 REAEDIHRLTASQVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAEY 670 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I++YF +P I +++ ++ GYV T+ GRR E+ S R+ ER A+N+P Sbjct: 671 IEKYFETYPKIKGFLDGLVADGKEKGYVSTMLGRRRPIPELKSGNFMQRSFGERVAMNSP 730 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQG+AADI + AM V++ L++ L ++++LQ+HDEL+ E +EE+ T S+I+ M+ A Sbjct: 731 IQGTAADIIKIAMNRVYQRLKEEGLQSRLVLQVHDELLIETKKEEVETVSRILEEEMKGA 790 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 ++L V L V++ N+W E Sbjct: 791 ----VHLSVELDVDMHEGNSWYE 809 Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 123/223 (55%), Gaps = 8/223 (3%) Query: 76 IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135 +Y YK R +PE L Q+PL++ A GI + G+EADD++ T +EKEG V Sbjct: 1 MYEAYKGTRKPMPEELREQVPLMKEMLTAMGIKIVSKAGYEADDLLGTLAVRSEKEGMDV 60 Query: 136 TIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 TI+S D+DL+QL + P T T E V++K+ + P +++ L+AL GD Sbjct: 61 TILSGDRDLLQLATEKVMIRLPKTSRGKTTIE-NFHAAEVLEKYQVTPPQIIELKALMGD 119 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248 S DNIPGIPG+G KTA ++ E+G +EN ++ IK K RE++ E+ + A LS+ L Sbjct: 120 SADNIPGIPGVGEKTATKMIVEFGTIENAYVHLEEIKPNKARESLREHYDLAELSKALAT 179 Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 + T+ P+ E L + P K LEF L+ R T+ Sbjct: 180 INTESPLEYVYEEARLGNLYTPEAYQLCKQLEFKNLLGRFDTS 222 >gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096] gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096] Length = 806 Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 194/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521 ++ K K++L GI + D L +Y+L S +++++IA+ + + +E Sbjct: 300 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 358 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + + EH V+L + KL + L +Y+ ++ P+ +V++ Sbjct: 359 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 414 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI++++ L+ ++ + + +L + IYD++G++FN++SPKQLG ILF K++ P Sbjct: 415 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 474 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ++K++STY L ++I ++HT Sbjct: 475 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 533 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAH Sbjct: 534 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 593 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F DIH A +FG++ V+ RR+AK +NF I+YGIS F L+ Sbjct: 594 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 653 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R ++ YI YF R+PGI Y+E + GYVET+F RR +INS ++ Sbjct: 654 NLGITRKQSKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 713 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ K+L+ KMLLQ+HDE+V EVP +E+T Sbjct: 714 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 773 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A ++L VPL V+ +W E Sbjct: 774 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 804 Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 123/224 (54%), Gaps = 12/224 (5%) Query: 76 IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG--F 133 +Y DYKA R K P+ Q +R A GI E++ +EADDII T +AE+ F Sbjct: 1 MYADYKAGRAKTPDEFREQFSYIREMLTALGIAYYELEHYEADDIIGTLDKMAERTEVPF 60 Query: 134 AVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189 VTI+S DKDL+QL T + + K E+ ++++K G+ P + + L+AL GD Sbjct: 61 DVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEKMGLTPNQFIDLKALMGDK 120 Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVML 249 DNIPG+ IG KT LL E+G+LE I + K K +EN++ + A LS+ L + Sbjct: 121 SDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKTSKMKENLINDRDQAFLSKTLATI 180 Query: 250 RTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLINRVAT 290 T PITI L+ ++ NGP + S F ++F +L +A+ Sbjct: 181 NTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKKGLAS 221 >gi|251795550|ref|YP_003010281.1| DNA polymerase I [Paenibacillus sp. JDR-2] gi|247543176|gb|ACT00195.1| DNA polymerase I [Paenibacillus sp. JDR-2] Length = 890 Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 196/544 (36%), Positives = 321/544 (59%), Gaps = 30/544 (5%) Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS 502 L + + L+K+ E+ K G + +L L GI G D+ L +Y+LD ++ Sbjct: 362 ALQQPFTAELRKWLEDADKPKNGFDTHKIELALGWRGIEWHGAAFDVQLAAYLLDPTDTN 421 Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPID----------KISDSQ-VQEHAIENSNVILQ 551 + ++ ++ +SS+P D K+ D++ + H ++ + + Sbjct: 422 LTLNALCDRY-----------GQSSVPHDEAVYGKGAKFKVPDNETLHRHLSAKADAVRK 470 Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611 L L+R L + +Y L++P+ +++ ME GI++++ L+++ +E+ L + Sbjct: 471 LTSLMRADLEKRGMNELYFELEQPLSVILAGMERQGIKVEKAELERLGSELETKLSAAVS 530 Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671 IY L+ +FN+ SPKQLG++LF KL P KTKTG + T A+ LE++ + I+ I Sbjct: 531 EIYRLAEMEFNIGSPKQLGEVLFEKLGLPVQKKTKTG-YSTDAEVLEKL-APYHEIVPLI 588 Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731 L +R LSK++STY + L + T ++HT+Y TGRL+S PNLQNIPI+ + G+ Sbjct: 589 LHYRTLSKLQSTYIEGLLKEVRPETGKIHTYYRQTIAATGRLSSQFPNLQNIPIRLEEGR 648 Query: 732 KIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790 +IR+AF+ S P +++ADYSQIELR+LAHI+ L + F + +DIH A ++FGV+ Sbjct: 649 QIRKAFVPSEPGWYILAADYSQIELRVLAHISGDERLKEAFIHDMDIHTKTAMDVFGVSA 708 Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850 ++V MRR AK +NF I+YGIS F L+ L I R EAA +I++YF F G+ +Y++ Sbjct: 709 DQVDSNMRRSAKAVNFGIVYGISDFGLSQNLNITRKEAAKFIEQYFEVFQGVRKYMDDIV 768 Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910 R++G+V T+ RR + +I + ++R+ ER A+N PIQG+AADI + AM+ ++++ Sbjct: 769 MQARRDGFVTTLLERRRYLPDIKASNFNLRSFAERTAMNTPIQGTAADIIKLAMVRMNET 828 Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970 L + L ++MLLQ+HDELVFEVPEEE+ +++ +M A + L VPLK ++ Sbjct: 829 LRERGLKSRMLLQVHDELVFEVPEEELELMKELVPSTMAGA----LTLDVPLKADVNYGV 884 Query: 971 NWQE 974 NW E Sbjct: 885 NWYE 888 Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 107/285 (37%), Positives = 162/285 (56%), Gaps = 12/285 (4%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+DG+S RAFYA P L+ GL NA+ GF ML KLL++ + +H V FD Sbjct: 6 LIDGNSIANRAFYAMPPLTNSA-GLHTNAVFGFTTMLLKLLEDEK----PTHVLVAFDAG 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 V FR+E Y +YK R K P L Q P+++ +AFGI E+ G+EADDII T T +A Sbjct: 61 KVVFRHEGYTEYKGGRAKTPSELSEQFPVMKDLLKAFGISQFELSGYEADDIIGTLTRLA 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVCLQ 183 +++ +++ DKD++QL S + T K ++EH + +K+G+ P +++ L+ Sbjct: 121 DEQKVETLVVTGDKDMLQLASDNVTIAITRKGIS-EVEHFSPAAIDEKYGLKPMQIIDLK 179 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 L GD+ DNIPGIPG+G KTA +L E+G +E +L N +K K +E + + + A +S Sbjct: 180 GLMGDASDNIPGIPGVGEKTALKMLHEFGTVEEVLANTESLK-GKMKEKVETHKDDAIMS 238 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +KL + +VP+ E + E L + LEF LI R+ Sbjct: 239 KKLATIFREVPLEHSAEDIRYEGYQPATLADAFRKLEFKSLIERL 283 >gi|148985374|ref|ZP_01818579.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71] gi|147922332|gb|EDK73452.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71] gi|301799217|emb|CBW31733.1| DNA polymerase I [Streptococcus pneumoniae OXC141] Length = 877 Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLVVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGVKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|148995016|ref|ZP_01823976.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68] gi|147926898|gb|EDK77946.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68] Length = 870 Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 364 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 422 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 423 KGVKKAIP----EREKFLEHLACKLAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLA 478 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 479 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 538 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 539 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 597 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 598 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 657 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 658 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 717 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 718 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 777 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 778 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 837 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 838 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 868 Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 109/286 (38%), Positives = 153/286 (53%), Gaps = 17/286 (5%) Query: 9 LVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 ++DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 1 MIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSHIL 53 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDII Sbjct: 54 VAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIG 113 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178 T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P + Sbjct: 114 TLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPAQ 173 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ E Sbjct: 174 FIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDKE 233 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 234 QAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 279 >gi|168489504|ref|ZP_02713703.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195] gi|183572034|gb|EDT92562.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195] gi|332075687|gb|EGI86154.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17570] Length = 877 Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|306826139|ref|ZP_07459474.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431615|gb|EFM34596.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 889 Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 210/529 (39%), Positives = 310/529 (58%), Gaps = 19/529 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509 LK F E LK+ ++ K K++L+R ++++ D L Y+L S +++I++IA Sbjct: 371 LKNFLEKTP-LKV-YDFKKAKVLLNRLDLNLQAPAFDSRLAKYLL-STVENNEISTIASL 427 Query: 510 --QKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 Q ++ K K +IP + EH V+++ +L KL L Sbjct: 428 YGQTYMVDDETFYGKGVKKAIP----EREKFLEHLARKVAVLVETEPVLIEKLSEHGQLD 483 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + +++P+ V+++MEI GI++ ++ L ++ AE + L + IY+L+ E+FN++SPK Sbjct: 484 LLYDMEQPLAFVLAKMEIAGIKVKKETLLEMQAENEVVIEQLTQEIYELADEEFNINSPK 543 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG +LF KL P KT +TA D+ + PI+K IL++RQ++KI+STY S Sbjct: 544 QLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVS 603 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLI 746 L + I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L+ Sbjct: 604 LQDWILD-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWEDSVLL 662 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTIN 805 S+DYSQIELR+LAHI+K L + F+ DIH A +FG+ E V+P RR+AK +N Sbjct: 663 SSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVN 722 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F ++YGIS F LA L I R +A YI YF RFPGI Y+E+ R GYVET+F R Sbjct: 723 FGVVYGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFKR 782 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R +INS +IR ER AIN+PIQGSAADI + AMI + K+L + TKMLLQ+H Sbjct: 783 RRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQVH 842 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DE+V EVP+ E+ ++ +ME+A I L VPL + W E Sbjct: 843 DEIVLEVPKSELAAVKVLVKQTMEEA----IQLSVPLIADENEGATWYE 887 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/285 (39%), Positives = 151/285 (52%), Gaps = 11/285 (3%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DGSS +RAF+A L R +GL NAI GF ML +L+ SH V Sbjct: 18 LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLERVE----PSHVLV 73 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDII T Sbjct: 74 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELPQYEADDIIGT 133 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 +AEK+ F VTI+S DKDL+QL T + + K E ++++K G+ P + Sbjct: 134 LGRLAEKDSFDVTIVSGDKDLIQLTDERTVVEISKKGVAEFEAFTPAYLMEKMGLTPAQF 193 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD DNIPG+ IG KT LL E+G+LE I N +K K +EN++ E Sbjct: 194 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLINDKEQ 253 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 A LS+ L + T PI I L+ L+ + L F + F +L Sbjct: 254 AFLSKTLATIETQAPIEIGLDDLVYSGPDVENLGKFYDEMGFKQL 298 >gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1] gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1] Length = 789 Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 183/417 (43%), Positives = 265/417 (63%), Gaps = 11/417 (2%) Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 KL KL+ +Y+ ++ P+ID++ +ME GI+I++ + +++ E+ +NL +E I+D Sbjct: 376 KLKENKLVKLYKEIELPVIDILFEMEKHGIKINEKKVYEINDELEENLKEIERKIFDYCK 435 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI---NCGDNPIIKNILEWR 675 E+FNL+SPKQL ILF KL KTKTG + T+ + L+++ N G +I IL++R Sbjct: 436 EEFNLNSPKQLSFILFEKLGLEPAKKTKTG-FSTSEEALQELKFKNPGHVELIDYILKYR 494 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 +LSK+KSTY +L N++ +R+HT + T TGR++S+ PNLQNIP+ + G++IR Sbjct: 495 ELSKLKSTYTLNLLNYM-ADDKRIHTTFKQTGTATGRISSINPNLQNIPVGSIYGKRIRE 553 Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F + + +S DYSQIELRILA ++ L F N DIH A EIFGV E+V P Sbjct: 554 CFEAEKGYRFVSFDYSQIELRILASLSNDENLIDAFINDEDIHNKTAKEIFGV--EEVDP 611 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 + RR AK +NF IIYG+SP+ LA I +SEA +I+RYF+ +PG+ YI+ ++ Sbjct: 612 KHRRLAKAVNFGIIYGLSPYGLARDTGITQSEAKVFIERYFNLYPGVKNYIDSIIKEAKE 671 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GY ETI GR+ +INS ++ ER AINAPIQGSAADI + AMI+++K L+ + Sbjct: 672 KGYTETILGRKRFIKDINSANRMLKQRAERIAINAPIQGSAADIIKLAMINIYKYLQKTQ 731 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + KM+LQIHDEL+FEV E+ + Q + ME I L+VPLKVN NW Sbjct: 732 IDVKMILQIHDELLFEVKEDIVEDFVQEFKNRMENV----IKLKVPLKVNYSTGKNW 784 Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 125/219 (57%), Gaps = 7/219 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + ++DG S YR FY TPLL+ G P + + F N++ L + E I V+FD Sbjct: 2 IVIIDGHSVSYRIFYKTPLLNNSK-GEPTSVLHSFINLIISLKEKLNPEKIY----VVFD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 T R++I+ +YKA R K PE L+PQ+ ++ FG+ EADDII T Sbjct: 57 SKGETERHKIHKEYKAQREKTPENLIPQIENLKKILPYFGVYVAYQDATEADDIIFTLIQ 116 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +KE + +I+ DKDL QLV+ +YD EE I+ + V +K+G+ PE++ AL+ Sbjct: 117 KYKKEN--IYLITKDKDLFQLVNDRVLIYDYQNEEIINRDKVKEKFGVYPEQIKDYLALS 174 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225 GD DNIPG+ G+G KTA L+ E+G+L+N+ N I+ Sbjct: 175 GDQSDNIPGVKGVGVKTAEKLINEFGSLDNVYQNIESIQ 213 >gi|308064229|gb|ADO06116.1| DNA polymerase I (polA) [Helicobacter pylori Sat464] Length = 893 Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 280/992 (28%), Positives = 472/992 (47%), Gaps = 128/992 (12%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKDLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E+A LS++L L+ ++ C P Sbjct: 237 DKESAFLSKELATLQRGC-----IKEFDFLSCAFP------------------------- 266 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 +EN + I+ E+ I S+L D E +P L L+ Sbjct: 267 -------------SENPLLKIKDELKEYGFI-----STLRDL------ENSPTPLILDNT 302 Query: 356 QKLSQYPINNDSYTK-----IVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAI 409 L P+ +++ K + NT + +++KL+ + F +++ D K +A+ Sbjct: 303 PLLENAPLLDNAPKKSCMIVLENTAPLSAFLEKLKNSNARIFARLVLDK----EKKVLAL 358 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHN 468 A DQ + E +F S+ Q++ FF+ +H IGH+ Sbjct: 359 AFLYEDQGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHD 401 Query: 469 IK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWL--SYTRKEILKS 523 +K + +Y +S+ +D +++++ + + D + +++L E +K Sbjct: 402 LKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--EVVREYLKEELIPHETIKD 459 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 K+ ++K+ ++ +A++ +L + E LL + ++ P++ V+ M Sbjct: 460 FKTKSKVEKLEQLDMELNALK------RLCEYFEKGGLEEGLLALARGVETPLMKVLMGM 513 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E G +ID K++ E L LE I DL G FNL+SPKQL +IL+ KL+ P Sbjct: 514 EFQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQN- 572 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 K+++ K+ + L++ +P I ILE+R+L+K+ +TY L + + ++HT + Sbjct: 573 KSRSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTF 626 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIA 762 T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+LAH + Sbjct: 627 IQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFS 686 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L F DIH + +FG E ++ + R AK+INF ++YG+ +L+ L Sbjct: 687 QDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLN 743 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IP +EA YI+ YF RFP I +Y+++ K + + T+ GR +D I+ Sbjct: 744 IPLNEAKSYIEAYFKRFPSIKDYLKRMKEEILKTSKAFTLLGRYRVFD-FAGVNDHIKGN 802 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Q Sbjct: 803 YLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNALKLQQ 861 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I + P LRVPL+ + ++ W E Sbjct: 862 EIQRILNDEVYP---LRVPLETSAFMAKRWNE 890 >gi|15674390|ref|NP_268564.1| DNA polymerase I [Streptococcus pyogenes M1 GAS] gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I [Streptococcus pyogenes M1 GAS] Length = 880 Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 198/517 (38%), Positives = 310/517 (59%), Gaps = 21/517 (4%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521 ++ K K++L GI + D L +Y+L S +++++IA+ + + +E Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + + EH V+L + KL + L +Y+ ++ P+ +V++ Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP- 640 +MEI GI++++ L+ ++ + + +L + IYD++G++FN++SPKQLG ILF K++ P Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548 Query: 641 -SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 KTKTG + T LE++ PI+ IL++RQ++K++STY L ++I ++ Sbjct: 549 EMTKKTKTG-YSTAVNVLERL-APIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKI 605 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRIL 758 HT Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+L Sbjct: 606 HTRYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVL 665 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRL 817 AHI+ L F DIH A +FG++ V+ RR+AK +NF I+YGIS F L Sbjct: 666 AHISGDEHLIAAFNEGADIHTSTAMRVFGIDRAADVTANDRRNAKAVNFGIVYGISDFGL 725 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 + L I R +A YI YF R+PGI Y+E + GYVET+F RR +INS Sbjct: 726 SNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNF 785 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 ++R+ ER AIN+PIQGSAADI + AMI++ K+L+ KMLLQ+HDE+V EVP +E+ Sbjct: 786 NVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDEL 845 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 T +++ +ME A ++L VPL V+ ++W E Sbjct: 846 TAIKKLVKDTMEAA----VDLAVPLCVDESTGHSWYE 878 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 116/304 (38%), Positives = 167/304 (54%), Gaps = 23/304 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K PE Q P +R A GI E++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKTSKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286 +EN++ + A LS+ L + T PITI L+ ++ NGP + S F ++F +L Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291 Query: 287 RVAT 290 +A+ Sbjct: 292 GLAS 295 >gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6] gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6] Length = 885 Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 183/491 (37%), Positives = 291/491 (59%), Gaps = 12/491 (2%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQVQEHAI 543 D+ + +Y+LD S + ++A ++ L + +E+L ++K + ++ + +A Sbjct: 401 DVAIAAYLLDPLASDYPFDTLAAQYVKDVLILSAEEVLGTKKE-VSWFEVPEETAAMYAG 459 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 E + L L KL + + +Y+ ++ P++ + ME GI++ D L+ + Sbjct: 460 EIAYTALSCGPGLVEKLEAQGMRKLYDEVEMPLVYTLCHMEEAGIRVLPDELETYGENLK 519 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + + LE +IY+ +GEKFN++SPKQLG ILF K++ P G KTKTG + T A LE++ Sbjct: 520 EGIARLETSIYEAAGEKFNINSPKQLGVILFEKMQLPGGKKTKTG-YSTAADVLEKLAV- 577 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 D P + +ILE+RQL+K+KSTYAD L I R+HT + T TGR++S EPNLQNI Sbjct: 578 DVPFVADILEYRQLTKLKSTYADGLAACIAA-DGRIHTTFKQTITATGRISSTEPNLQNI 636 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 P + +LG++IR+ F+ + ADYSQIELR+LA ++ L + + ++ DIH + A+ Sbjct: 637 PTRIELGRQIRKCFVPQDGFVFVDADYSQIELRVLASLSGDEKLIEAYRDAEDIHAITAS 696 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 ++F V + +V+P MRR+AK +NF I+YGIS L+ L I R EA +YI Y+ +PGI Sbjct: 697 QVFHVPLSEVTPLMRRNAKAVNFGIVYGISAHGLSEDLNISRKEAQEYIDSYYEAYPGIR 756 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 Y+E ++ Y ET +GRR E++S R ER A NAPIQG+AADI + A Sbjct: 757 GYLESLVETAKKKEYSETYYGRRRPMPELSSGNFMQRQFGERVAKNAPIQGTAADIIKIA 816 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M V + L++ L +++LLQ+HDEL+ E E+E+ +I+ M A +L V ++ Sbjct: 817 MNRVDQRLQEEGLKSRLLLQVHDELLLETAEDELERVREILREEMIGAT----DLAVSME 872 Query: 964 VNIKVSNNWQE 974 +++ NW E Sbjct: 873 IDMHDGKNWYE 883 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 103/288 (35%), Positives = 164/288 (56%), Gaps = 13/288 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + ++DG S + RAFY P L+ +G A+ GF N+L+++L + E + V FD Sbjct: 5 ILIIDGHSMLNRAFYGLPDLTNA-EGRHTGAVLGFLNILFRVLDEEKPE----YLVVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++++ +YK R +PE L Q+PL++ A G+ I +G+EADD+I T Sbjct: 60 LSAPTFRHKMFAEYKGTRHPMPEELREQVPLIKEVLTAMGVTIITKEGYEADDLIGTVAK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 EKEG VTI+S D+DL+QL + P T T + + VI+++ + P ++ Sbjct: 120 RGEKEGMDVTILSGDRDLLQLATDKILVRIPKTKGGQTTVLD-YHTKDVIEEYQVTPAQI 178 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD+ DNIPG+PG+G KTA +L +YG +EN + +K KK E++ ++ + Sbjct: 179 IELKALMGDTADNIPGLPGVGPKTATKILLDYGTIENAHDHVEELKPKKAMESMRDHWDL 238 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 A LS++L + TD P+ + L L D P + L F KL++R Sbjct: 239 AVLSKQLATINTDSPVELELSEARLGDLYTPEAYEIFRQLGFKKLLSR 286 >gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2] gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2] Length = 912 Score = 333 bits (855), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 197/510 (38%), Positives = 306/510 (60%), Gaps = 14/510 (2%) Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD-IASIAQKWLSYTRKE--ILKSRK 525 I Y+ L GI+ + M+++Y L S ++ D I I + Y++ E K+ Sbjct: 411 ISYNFKALLNLGINFKSMYMDMMIAYHLISSQTKIDPIIPIVE----YSKLEPKDFKTAF 466 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 I ++ I+ ++ S IL ++ L L E L + + + P+I V+S ME Sbjct: 467 GKINVELITAQDFSKYLSAISIGILAIYDELNYLLKKEDLYKILMKNEMPLIPVLSLMER 526 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 GI+ID K S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL PSG KT Sbjct: 527 KGIEIDVQYFKNYSLELDKELLKIEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKT 586 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTG + T LE + I + +L++R+L+K+K+TY D+LP +++ + R+HT ++ Sbjct: 587 KTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTTFNQ 644 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 T TGRL+S +PNLQNIP+KTD G KIR F++ K L+S DYSQ+ELR+L ++K Sbjct: 645 IGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDE 704 Query: 766 PLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + + D+H + A IF + + E VS + R AK INFSIIYG +PF LA +L+IP Sbjct: 705 NLIEAYREEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIP 764 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 +A++YIK+YF ++P + + + F ++GYV+T+FGR+ + I+S +I++ E Sbjct: 765 VKDASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAE 824 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R A+N IQG+AA++ ++ M+ V+ L+D K +LLQ+HDEL+FEV E + S+I+ Sbjct: 825 RMAVNTVIQGTAAEVLKKVMVKVYDVLKD-KEEIALLLQVHDELIFEVEESSVEKYSEIL 883 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ + V L +NI + NW E Sbjct: 884 ADIMKNTVQLE---DVKLNININIGKNWAE 910 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 146/293 (49%), Gaps = 18/293 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+D S+ +YRA++A K++ P A+ GF N L ++ + + +A+ F V Sbjct: 6 LLDVSAIMYRAYFANINFRTKNE--PTGAVYGFINTLLSIINEFKPDYMAAAFDV---KR 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 + R EIY DYK+NR PE L+ Q+P + AF I +I G+EADD++ + Sbjct: 61 SSLKRTEIYSDYKSNRQSAPEDLITQIPRIEEVLDAFNINRYKIDGYEADDVLGSLAKKI 120 Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181 K+ V I++ DKDL QLV L + EK I + VIK G+ PEK+ Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGILKTSDDVIKYLGVVPEKIPD 180 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236 L L GD D IPG+ IG K A + +Y +LE I N +K +N++ Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYDNIDNLKNIDGIGPSLIKNLVNE 240 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 + A +SR+L + TD+ IT+ E + + +L S K LEF I ++ Sbjct: 241 KDIAFMSRELAKIFTDLDITVE-EKGLQYGMDREKLYSLCKILEFKMFIKKLG 292 >gi|237649916|ref|ZP_04524168.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974] gi|237822599|ref|ZP_04598444.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974M2] Length = 877 Score = 333 bits (855), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 112/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL EYG+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEYGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] Length = 945 Score = 333 bits (855), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 196/522 (37%), Positives = 313/522 (59%), Gaps = 21/522 (4%) Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KE 519 KIGH++K+D VL GI ++G F D +L ++ G H + +A+ L Y+ K+ Sbjct: 432 KIGHHLKFDLEVLRANGIHVKGPFFDTLLAHALIAPGMK-HGMDVLAENLLQYSTIKLKD 490 Query: 520 ILK--SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 I ++K + + + +++ E++++ LQL +L+ ++ + ++ ++ P++ Sbjct: 491 IAAPGAKKRELDTSGVPVEVMGKYSAEDADITLQLSAVLKRQVKESGMEKLFRTVELPLL 550 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 V++ ME +GI++ + L++ S ++ + L E I + +G NL+SPKQLGD LF +L Sbjct: 551 PVLADMEFSGIRVLPESLEKASVKVGAIIDGLRERIEEAAGHPLNLNSPKQLGDFLFGEL 610 Query: 638 KF-PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 + KTKTGQ+ T L + +PII +IL +R+ K+KSTY D+LP +I R Sbjct: 611 ELVKKPKKTKTGQFVTDEDTLSAL-APQHPIIADILAYRENMKLKSTYLDALPKYICPRD 669 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIE 754 R+HT + T TGRLAS +PNLQNIP++T+ G+ IR AF+ P ++K ++SADYSQIE Sbjct: 670 GRIHTQFHQMLTATGRLASQDPNLQNIPVRTEQGRLIRTAFV-PASEKYTMLSADYSQIE 728 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LRI+A ++ + F DIH AA ++G+ ++V MRR AKT+NF IIYGIS Sbjct: 729 LRIMAALSGDPAMCGAFREGRDIHTETAARVYGIPRDQVDAVMRRAAKTVNFGIIYGISA 788 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 F L+ +L PR EAA I+ YF +FP + ++E + Q GY ET+ GRR EINS Sbjct: 789 FGLSQRLGCPRGEAATLIENYFTQFPVVKSFMEDLVHKAEQAGYAETLLGRRRMIPEINS 848 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 +I++ ER AIN PIQG+AAD+ + AMI V K L+ + ++++LQIHDEL+ ++ Sbjct: 849 ANKTIKSAAERTAINTPIQGTAADMIKIAMIHVDKLLKGTR--SRLILQIHDELLVDLHR 906 Query: 935 EEITTASQIIVHSMEKACLPKINL--RVPLKVNIKVSNNWQE 974 +E+ ++ +E+A + + L VP+ V + NW E Sbjct: 907 DELD-----LIPKIEEAMVSALPLPNGVPILVEARTGGNWLE 943 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 113/287 (39%), Positives = 173/287 (60%), Gaps = 16/287 (5%) Query: 7 LFLVDGSSFIYRA---FYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LF++DG + YRA F++ P+ R G+ +A+ GF N L +L++ R +H A Sbjct: 9 LFILDGMALAYRAHFAFFSNPI--RNSKGVNTSAVYGFANTLLGILEHERP----THIAA 62 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A T R+++YP YKANR +PE L Q+PL+ +A IP + +G+EADD I T Sbjct: 63 CFDTSAPTARHKLYPAYKANRESMPEELSDQMPLIFRLLEAMNIPILRYEGYEADDTIGT 122 Query: 124 YTYIAEK-EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP-PE 177 IA+ EGF ++S DKDL QL+S T L+ K E ID+ + ++WGI + Sbjct: 123 LARIADGTEGFQTYMVSQDKDLGQLISSTCFLWKPGKRGNDHEVIDLAKLKEQWGIERAD 182 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 ++V + AL GDS DNIPG+PG+G KTA LL+ E+G++EN+L N ++K KR++ + E Sbjct: 183 QVVDILALMGDSSDNIPGLPGVGEKTAKLLIGEFGSVENLLSNTDKLK-GKRKQIVEENG 241 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 A LS++L + +VP+T+ L L+ + + L + L+ LEF + Sbjct: 242 AMATLSKQLATIDRNVPLTVTLPELVKREPSPEELQALLQELEFRSM 288 >gi|208435338|ref|YP_002267004.1| DNA polymerase I [Helicobacter pylori G27] gi|208433267|gb|ACI28138.1| DNA polymerase I [Helicobacter pylori G27] Length = 905 Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 289/996 (29%), Positives = 464/996 (46%), Gaps = 124/996 (12%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +EI GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEISGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 +A LS++L L ++ C P LK + K ++T D + Sbjct: 237 DKGSAFLSKELATLERGC-----IKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLE 291 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK-----INSEQTPQKL 350 + P++LD + A++ TS + SD K + P Sbjct: 292 NSPT-PLILDNVPVLDSTPALDN-------APTSDNAPTSDNAPKKSRLIVLESAAPLSA 343 Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIA 410 FLE+L+ N + ++V KD K +A+A Sbjct: 344 FLEKLKN-----PNARVFMRLVLDKD---------------------------KKILALA 371 Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK 470 DQ + E +F S+ Q++ +IL +H IGH++K Sbjct: 372 FLYEDQGYFLPLE-EALFSPFSLEFLQNAFS------QIL---------QHACIIGHDLK 415 Query: 471 -YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RK 525 + +Y +S+ +D +++++ + + D E+LK ++ Sbjct: 416 PLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLKE 461 Query: 526 SSIPIDKISD----SQVQEHAIENS--NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 IP +KI D S+V++ + + N + +L + E LL + ++ P + V Sbjct: 462 DLIPHEKIKDFKTKSKVEKLELLSVELNALKRLCEYFEKGGLEEDLLTLARDIETPFMKV 521 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 + ME G +ID K + E L LE I DL G FNL+SPKQL ++L+ KL Sbjct: 522 LMGMEFQGFKIDAPYFKHLEQEFKNELHVLEHQILDLIGVDFNLNSPKQLSEVLYEKLGL 581 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 P K T ++L +I +P I ILE+R+L+K+ +TY L + + ++ Sbjct: 582 P-----KNKSHSTDEKNLLKI-LDKHPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKI 634 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRIL 758 HT + T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+L Sbjct: 635 HTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 694 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH ++ L + F DIH + +FG ++ K + R AK+INF ++YG+ +L+ Sbjct: 695 AHFSQDKDLMEAFLKGRDIHLETSKALFGGDLAK---EKRSIAKSINFGLVYGMGSKKLS 751 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 L IP SEA YI+ YF RFP I +Y+ + K + + T+ GR +D Sbjct: 752 ETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGVNDY 810 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 I+ R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Sbjct: 811 IKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAP 869 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + I + P LRVPL+ + V+N W E Sbjct: 870 KLQREIQRILNDEVYP---LRVPLETSAFVANRWNE 902 >gi|149004186|ref|ZP_01828983.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69] gi|147757848|gb|EDK64859.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69] Length = 870 Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 205/515 (39%), Positives = 300/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 364 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 422 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 423 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLSFVLA 478 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 479 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 538 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 539 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 597 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 598 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 657 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 658 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 717 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 718 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 777 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 778 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 837 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 838 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 868 Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 110/286 (38%), Positives = 153/286 (53%), Gaps = 17/286 (5%) Query: 9 LVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 ++DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 1 MIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSHIL 53 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDII Sbjct: 54 VAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIG 113 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178 T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P + Sbjct: 114 TLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPAQ 173 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + L+AL GD DNIPG+ +G KT LL EYG+LE I N +K K +EN++ E Sbjct: 174 FIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEYGSLEGIYENIDGMKTSKMKENLINDKE 233 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 234 QAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 279 >gi|258616062|ref|ZP_05713832.1| DNA polymerase I [Enterococcus faecium DO] Length = 838 Score = 333 bits (855), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 210/536 (39%), Positives = 304/536 (56%), Gaps = 36/536 (6%) Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462 FK E D++++ + G N T+EI+ KK FEN F Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENRAFHSWITDP 368 Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515 LK ++ K + L+RY +G + D++L +Y+LD+ S DI IA + + Sbjct: 369 TRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K K +P + + H I L L +L + ++ +++ P Sbjct: 429 DEAVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELP 485 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + ++++MEI+GI++D L+++ E S L +E+ IY+ +GE+FNL+SPKQLG ILF Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 K+ P KTKTG + T LEQ+ PI+++IL +RQ++KI+STY + L I + Sbjct: 546 KMGLPVIKKTKTG-YSTAVDVLEQLRE-QAPIVEDILTYRQIAKIQSTYVEGLLKVI-QS 602 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIE 754 +VHT Y T TGRL+S++PNLQNIPI+ D G+KIR+AF+ LI S+DYSQIE Sbjct: 603 DGKVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIE 662 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGIS 813 LR+LAHI+ L F DIH A +FG+ E V+P MRR AK +NF I+YGIS Sbjct: 663 LRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGIS 722 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + L+ L I R A YI YF ++PG+ EY+E+ + GYVET++ RR + +IN Sbjct: 723 DYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDIN 782 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 S +IR+ ER AIN PIQGSAADI + AMI + K L++ L MLLQ+HDELV Sbjct: 783 SRNYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELV 838 Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 163/293 (55%), Gaps = 12/293 (4%) Query: 4 ENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +N L LVDG+S +RAF+A L R +GL NAI F M ++Q + +H Sbjct: 3 KNKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y +YK R K P Q+P +R G+ E+ +EADDI Sbjct: 59 VLVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIP 175 I T +K+ F V ++S D+DL QL S + TVK E EHV +K+ G+ Sbjct: 119 IGTLAEKVDKDQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLT 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++++ ++ L GD+ DNIPG+ IG KTA LL++YG++E I + +KQ K +EN++ Sbjct: 179 PKQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIN 238 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A LS+KL + T P+ + ++ L E N +L+ F K ++F + ++++ Sbjct: 239 DKEQAFLSKKLATINTSAPVDVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291 >gi|257414061|ref|ZP_04745123.2| DNA polymerase I [Roseburia intestinalis L1-82] gi|257201332|gb|EEU99616.1| DNA polymerase I [Roseburia intestinalis L1-82] Length = 930 Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 174/419 (41%), Positives = 266/419 (63%), Gaps = 7/419 (1%) Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615 L L E + H++ ++ P++ ++ ME GI ++ L + +++ + LE+ IY+ Sbjct: 517 LETDLKEEGMDHLFTEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYE 576 Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675 +GE+FN++SPKQLG ILF KL P G KTKTG + T A L+++ + PI+ +ILE+R Sbjct: 577 EAGEEFNINSPKQLGVILFEKLSMPYGKKTKTG-YSTAADVLDRL-APEYPIVSDILEYR 634 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 QL+K+KSTYAD L N+I K R+HT ++ T TGRL+S EPNLQNIP++ +LG+ IR+ Sbjct: 635 QLTKLKSTYADGLVNYIAK-DGRIHTSFNQTITATGRLSSTEPNLQNIPMRIELGRLIRK 693 Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 AF+ + + ADYSQIELR+LAH++ L + + + DIHR+ A+++F + ++V+ Sbjct: 694 AFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTD 753 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 RR+AK +NF I+YGIS F L+ L I + EAA+YI+RYF +P I +++ ++ Sbjct: 754 LQRRNAKAVNFGIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKTFLDGLVAEAKE 813 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GYV T+FGRR E++S R+ ER A+N+PIQG+AADI + AMI VH L Sbjct: 814 KGYVTTMFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIRVHDRLLKEN 873 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L ++++L +HDEL+ E EE +I+ M A +L V L+++ V NW E Sbjct: 874 LKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAA----DLAVTLEIDAHVGKNWYE 928 Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 102/301 (33%), Positives = 169/301 (56%), Gaps = 32/301 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG S + RAF+ P L+ +GL NA+ GF N+++K+L+ + + + V FD Sbjct: 9 LVLIDGHSILNRAFFGIPDLTNS-EGLHTNAVYGFLNIMFKILEEEQPD----YLTVAFD 63 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++++ +YK R + + L Q+PL++ +A G+ IE G+EADD++ T Sbjct: 64 VSEPTFRHKMFAEYKGTRKPMAQELREQVPLMKEMLKAMGVTTIEKGGYEADDLLGTIAK 123 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +E++G V+++S D+DL+QL + P T T + E + V +K+ + P + Sbjct: 124 QSEQKGLTVSVVSGDRDLLQLATDHIKIRIPKTKRTGT-EIEDYNAAEVQEKYQVTPIEF 182 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DNIPG+PGIG KTA ++ +YG++EN + +K + +N+ EY + Sbjct: 183 IDVKALMGDTADNIPGVPGIGEKTATAIIAQYGSVENAYAHVDELKPPRASKNLKEYYDL 242 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL--ISFL---------KALEFTKLINRV 288 A++S+ L TI + I D +G +L IS L K LEF L+NR Sbjct: 243 AQMSKTLA--------TIEIHADIDYDLSGAKLNGISSLYTEEAYLLCKRLEFKNLLNRF 294 Query: 289 A 289 A Sbjct: 295 A 295 >gi|319744359|gb|EFV96719.1| DNA-directed DNA polymerase I [Streptococcus agalactiae ATCC 13813] Length = 880 Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 210/563 (37%), Positives = 323/563 (57%), Gaps = 44/563 (7%) Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 +TI+ V Q++ K L+K I +Y + K K++L+R+ I + Sbjct: 347 DTIYATSDVSLLQEALFKKALSKPIKTY---------------DFKRSKVLLNRFNIDLP 391 Query: 485 --GFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIP-----IDKI 533 F D L Y+L S + +++IA+ + L K K +IP +D + Sbjct: 392 EPAF-DTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLDHL 449 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 + +V+ +N++ QL + + +L+ E +++P+ +V+++MEI GI++ ++ Sbjct: 450 A-KKVKVLVDSEANIMQQLKVNEQEELLFE--------MEQPLANVLAKMEIRGIKVKKN 500 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L +++ E K + +L + IY+L+G++FN++SPKQLG +LF L P KT +T Sbjct: 501 TLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYST 560 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 A D+ + +P++ ILE+RQ++K++STY L ++I ++HT Y T TGRL Sbjct: 561 AVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRL 619 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 +S +PNLQNIP++ + G+ IR+AF+ S L+S+DYSQIELR+LAHI+K L F+ Sbjct: 620 SSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFK 679 Query: 773 NSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIH A +FG+ E V+P RR+AK +NF I+YGIS F L+ L IPR A Y Sbjct: 680 EGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQY 739 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I YF R+PGI Y+E + GYVET+F RR +INS +IR ER AIN+P Sbjct: 740 IDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSP 799 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGSAADI + AMI++ + L+ +KMLLQ+HDE+V EVP EEI +++ +ME A Sbjct: 800 IQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIKELVTKTMESA 859 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 I+L VPL + W E Sbjct: 860 ----ISLSVPLIADENAGETWYE 878 Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 115/287 (40%), Positives = 156/287 (54%), Gaps = 20/287 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M +N L L+DGSS +RAF+A L + + + GL NAI GF ML +L + Sbjct: 1 MTNKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 SH V FD TFR E+Y DYK R K P+ Q P +R GI E++ + Sbjct: 57 --PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHY 114 Query: 116 EADDIIATYTYIAE--KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T AE KE F +T++S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLAKQAEASKEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P + + L+AL GD DNIPG+ IG KT LL EYG+LE I N +KQ K Sbjct: 175 EKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276 +EN++ E A LS+ L + PITI LE ++ +GP+ I L Sbjct: 235 KENLINDKEQAFLSKTLATINIASPITIGLEDIL---YSGPQDIKAL 278 >gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005] gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429] gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005] gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429] Length = 880 Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 194/515 (37%), Positives = 306/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521 ++ K K++L GI + D L +Y+L S +++++IA+ + + +E Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + + EH V+L + KL + L +Y+ ++ P+ +V++ Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI++++ L+ ++ + + +L + IYD++G++FN++SPKQLG ILF K++ P Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ++K++STY L ++I ++HT Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F DIH A +FG++ V+ RR+AK +NF I+YGIS F L+ Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R ++ YI YF R+PGI Y+E + GYVET+F RR +INS ++ Sbjct: 728 NLGITRKQSKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ K+L+ KMLLQ+HDE+V EVP +E+T Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A ++L VPL V+ +W E Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 166/304 (54%), Gaps = 23/304 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ R Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVR-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K P+ Q +R A GI E++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFSYIREMLTALGIAYYELEHY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKTSKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286 +EN++ + A LS+ L + T PITI L+ ++ NGP + S F ++F +L Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291 Query: 287 RVAT 290 +A+ Sbjct: 292 GLAS 295 >gi|291535124|emb|CBL08236.1| DNA polymerase I [Roseburia intestinalis M50/1] Length = 926 Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 174/419 (41%), Positives = 266/419 (63%), Gaps = 7/419 (1%) Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615 L L E + H++ ++ P++ ++ ME GI ++ L + +++ + LE+ IY+ Sbjct: 513 LETDLKEEGMDHLFTEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYE 572 Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675 +GE+FN++SPKQLG ILF KL P G KTKTG + T A L+++ + PI+ +ILE+R Sbjct: 573 EAGEEFNINSPKQLGVILFEKLSMPYGKKTKTG-YSTAADVLDRL-APEYPIVSDILEYR 630 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 QL+K+KSTYAD L N+I K R+HT ++ T TGRL+S EPNLQNIP++ +LG+ IR+ Sbjct: 631 QLTKLKSTYADGLVNYIAK-DGRIHTSFNQTITATGRLSSTEPNLQNIPMRIELGRLIRK 689 Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 AF+ + + ADYSQIELR+LAH++ L + + + DIHR+ A+++F + ++V+ Sbjct: 690 AFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTD 749 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 RR+AK +NF I+YGIS F L+ L I + EAA+YI+RYF +P I +++ ++ Sbjct: 750 LQRRNAKAVNFGIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKTFLDGLVAEAKE 809 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GYV T+FGRR E++S R+ ER A+N+PIQG+AADI + AMI VH L Sbjct: 810 KGYVTTMFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIRVHDRLLKEN 869 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L ++++L +HDEL+ E EE +I+ M A +L V L+++ V NW E Sbjct: 870 LKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAA----DLAVTLEIDAHVGKNWYE 924 Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 102/301 (33%), Positives = 169/301 (56%), Gaps = 32/301 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG S + RAF+ P L+ +GL NA+ GF N+++K+L+ + + + V FD Sbjct: 5 LVLIDGHSILNRAFFGIPDLTNS-EGLHTNAVYGFLNIMFKILEEEQPD----YLTVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++++ +YK R + + L Q+PL++ +A G+ IE G+EADD++ T Sbjct: 60 VSEPTFRHKMFAEYKGTRKPMAQELREQVPLMKEMLKAMGVTTIEKGGYEADDLLGTIAK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +E++G V+++S D+DL+QL + P T T + E + V +K+ + P + Sbjct: 120 QSEQKGLTVSVVSGDRDLLQLATDHIKIRIPKTKRTGT-EIEDYNAAEVKEKYQVTPIEF 178 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DNIPG+PGIG KTA ++ +YG++EN + +K + +N+ EY + Sbjct: 179 IDVKALMGDTADNIPGVPGIGEKTATAIIAQYGSVENAYAHVDELKPPRASKNLKEYYDL 238 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL--ISFL---------KALEFTKLINRV 288 A++S+ L TI + I D +G +L IS L K LEF L+NR Sbjct: 239 AQMSKTLA--------TIEIHADIDYDLSGAKLNGISSLYTEEAYLLCKRLEFKNLLNRF 290 Query: 289 A 289 A Sbjct: 291 A 291 >gi|291539651|emb|CBL12762.1| DNA polymerase I [Roseburia intestinalis XB6B4] Length = 930 Score = 333 bits (854), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 174/419 (41%), Positives = 266/419 (63%), Gaps = 7/419 (1%) Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615 L L E + H++ ++ P++ ++ ME GI ++ L + +++ + LE+ IY+ Sbjct: 517 LETDLKEEGMDHLFTEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYE 576 Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675 +GE+FN++SPKQLG ILF KL P G KTKTG + T A L+++ + PI+ +ILE+R Sbjct: 577 EAGEEFNINSPKQLGVILFEKLSMPYGKKTKTG-YSTAADVLDRL-APEYPIVSDILEYR 634 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 QL+K+KSTYAD L N+I K R+HT ++ T TGRL+S EPNLQNIP++ +LG+ IR+ Sbjct: 635 QLTKLKSTYADGLVNYIAK-DGRIHTSFNQTITATGRLSSTEPNLQNIPMRIELGRLIRK 693 Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 AF+ + + ADYSQIELR+LAH++ L + + + DIHR+ A+++F + ++V+ Sbjct: 694 AFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFHIPFDEVTD 753 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 RR+AK +NF I+YGIS F L+ L I + EAA+YI+RYF +P I +++ ++ Sbjct: 754 LQRRNAKAVNFGIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKTFLDGLVAEAKE 813 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GYV T+FGRR E++S R+ ER A+N+PIQG+AADI + AMI VH L Sbjct: 814 KGYVTTMFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIRVHDRLLKEN 873 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L ++++L +HDEL+ E EE +I+ M A +L V L+++ V NW E Sbjct: 874 LKSRLILTVHDELLVETAIEEEDAVRKILEEEMHGAA----DLAVTLEIDAHVGKNWYE 928 Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 102/301 (33%), Positives = 169/301 (56%), Gaps = 32/301 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG S + RAF+ P L+ +GL NA+ GF N+++K+L+ + + + V FD Sbjct: 9 LVLIDGHSILNRAFFGIPDLTNS-EGLHTNAVYGFLNIMFKILEEEQPD----YLTVAFD 63 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++++ +YK R + + L Q+PL++ +A G+ IE G+EADD++ T Sbjct: 64 VSEPTFRHKMFAEYKGTRKPMAQELREQVPLMKEMLKAMGVTTIEKGGYEADDLLGTIAK 123 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +E++G V+++S D+DL+QL + P T T + E + V +K+ + P + Sbjct: 124 QSEQKGLTVSVVSGDRDLLQLATDHIKIRIPKTKRTGT-EIEDYNAAEVKEKYQVTPIEF 182 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DNIPG+PGIG KTA ++ +YG++EN + +K + +N+ EY + Sbjct: 183 IDVKALMGDTADNIPGVPGIGEKTATAIIAQYGSVENAYAHVDELKPPRASKNLKEYYDL 242 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRL--ISFL---------KALEFTKLINRV 288 A++S+ L TI + I D +G +L IS L K LEF L+NR Sbjct: 243 AQMSKTLA--------TIEIHADIDYDLSGAKLNGISSLYTEEAYLLCKRLEFKNLLNRF 294 Query: 289 A 289 A Sbjct: 295 A 295 >gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232] gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232] Length = 880 Score = 333 bits (854), Expect = 9e-89, Method: Compositional matrix adjust. Identities = 194/515 (37%), Positives = 305/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521 ++ K K++L GI + D L +Y+L S +++++IA+ + + +E Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + + EH V+L + KL + L +Y+ ++ P+ +V++ Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI++++ L+ ++ + + +L + IYD++G++FN++SPKQLG ILF K++ P Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ++K++STY L ++I ++HT Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+ +DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLGSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F DIH A +FG++ V+ RR+AK +NF I+YGIS F L+ Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF R+PGI Y+E + GYVET+F RR +INS ++ Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ K+L+ KMLLQ+HDE+V EVP +E+T Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A ++L VPL V+ +W E Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878 Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 116/304 (38%), Positives = 167/304 (54%), Gaps = 23/304 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ R Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVR-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K P+ Q P +R A GI E++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286 +EN++ + A LS+ L + T PITI L+ ++ NGP + S F ++F +L Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291 Query: 287 RVAT 290 +A+ Sbjct: 292 GLAS 295 >gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3] gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3] Length = 878 Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 177/405 (43%), Positives = 259/405 (63%), Gaps = 7/405 (1%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ +V+++MEI GI+++ + LK + +E + L + IY+L+G++FN++SPKQLG Sbjct: 477 MELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEFNINSPKQLGT 536 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF ++ P KT +TA D+ + P++ ILE+RQ++K++STY L + Sbjct: 537 ILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDA 596 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750 I + ++HT Y T TGRL+S +PNLQNIP++ + G+ IR+AF+ S L+++DY Sbjct: 597 ILE-DGKIHTRYVQDLTQTGRLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDY 655 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSII 809 SQIELR+LAHI++ L + F+ DIH A +FG+ E V+P RR+AK +NF ++ Sbjct: 656 SQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVV 715 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS F L+ L I R EA YI YF RFPGI Y+E R GYVETI+ RR Sbjct: 716 YGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRREL 775 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +INS ++RN ER AIN+PIQGSAADI + AMI++ K+L + LAT+MLLQ+HDE+V Sbjct: 776 PDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EVP E+ T ++ +ME A I+L VPL + + W E Sbjct: 836 LEVPVAELETVKAMVKETMESA----ISLSVPLIADENEGSTWYE 876 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 118/316 (37%), Positives = 166/316 (52%), Gaps = 24/316 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKES 56 K+N L L+DGSS +RAF+A L + D GL NAI GF ML +++ Sbjct: 2 KKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPTGLHTNAIYGFNLMLDHMMKRIE--- 55 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116 +H V FD TFR E+Y DYKA R K P+ Q P +R A G+ E+ +E Sbjct: 56 -PTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDAMGVKHYELAQYE 114 Query: 117 ADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIK 170 ADDII T +AE+ F VTI+S DKDL+QL T + + K E+ ++++ Sbjct: 115 ADDIIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLME 174 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K GI P + + L+AL GD DNIPG+ IG KT LL E+G+L+ I N +K K + Sbjct: 175 KMGITPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLTEFGSLDGIYENIDSMKASKMK 234 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 EN++ E A LSR L + T PI I L+ ++ + L F + F +L ++ T Sbjct: 235 ENLIADKEKAFLSRTLATIDTQAPIEIGLDDIVYQGPKVDELGQFYDDMGFKQLRAQLGT 294 Query: 291 TYDCDAANIEPVVLDI 306 T ++ E VLD Sbjct: 295 T-----SSQEEAVLDF 305 >gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701] gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701] Length = 997 Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 198/550 (36%), Positives = 310/550 (56%), Gaps = 32/550 (5%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506 ++L+ L + E+ K N KYD+L+L R+G+S+ G D +L Y+ D+ + H + Sbjct: 455 QVLTALAPWLESARHPKTLQNAKYDRLILLRHGLSLEGVVMDTLLADYLRDA-NAKHGLE 513 Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL--IVEK 564 +A++ +T + + + + + +V +L LLR +L + E Sbjct: 514 VLAERNFGFTPTSFSELVAKGETFAAVPIAAAARYCAMDVHVTWRLTPLLRGQLQQLGEA 573 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L + ++++ P+ V+++ME TGI+ID+ L +S E++ L SLE + +G +FNL+ Sbjct: 574 LPKLLDQVELPLEPVLARMEATGIRIDKPYLATLSEELAGTLASLEAGAREAAGVEFNLA 633 Query: 625 SPKQLGDILFTKLKFP--SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 SPKQLG++LF L KTKTG W T A LE++ GD+P++ +LE R LSK+KS Sbjct: 634 SPKQLGELLFETLGLERKKSRKTKTG-WSTDAAVLEKL-AGDHPVVPLVLEHRTLSKLKS 691 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D+LP + T RVHT ++ A T TGRL+S PNLQNIPI+T+ ++IR+AF+ Sbjct: 692 TYVDALPALVEPETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQEG 751 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 +LISADYSQIELRIL H++ L + + N D+H + A + ++ ++V+ RR K Sbjct: 752 WQLISADYSQIELRILTHLSGEEVLVEAYANGDDVHALTARLL--LDKDEVTADERRLGK 809 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 TINF +IYG+ R A + + +S+A +++ +Y R+P + ++E + GYVETI Sbjct: 810 TINFGVIYGMGAQRFARETGVSQSQAKEFLSKYKQRYPKVFAFLELQERLALSRGYVETI 869 Query: 863 FGRRIHY---------------DEIN---SPKSSIRNINERAAINAPIQGSAADITRRAM 904 GRR + +EI + ++ + RAA NAPIQGS+ADI + AM Sbjct: 870 LGRRRPFAFDPGGLGRLRGKPPEEIELEVARRAGMEAQQLRAAANAPIQGSSADIIKLAM 929 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 + + + L L ++LLQ+HDELV E E + + ME A + L VPL V Sbjct: 930 VQLDQQLRASGLPARLLLQVHDELVLEAAPEALEPVLAAVKQVMENA----VRLLVPLLV 985 Query: 965 NIKVSNNWQE 974 + V NW E Sbjct: 986 DTGVGPNWME 995 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 150/308 (48%), Gaps = 27/308 (8%) Query: 1 MQKENHLFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M + L LVDG S +R+FYA LS K +G+P + GF L + ++ + Sbjct: 1 MAEAPMLLLVDGHSLAFRSFYAFAKGGEGGLSTK-EGIPTSVTYGFLKALLENVKGLTPQ 59 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQG 114 + + FD TFR+E YKA+R + PE L L + A +P G Sbjct: 60 GVV----IAFDTAEPTFRHEADASYKAHRDEAPEQFFADLANLQEILAGAMDLPLCMAPG 115 Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKID 164 +EADD++ T A G+ V I+S D+DL QLV T LY + I Sbjct: 116 YEADDVLGTLANRAAGAGWRVRILSGDRDLFQLVDDTRDIAVLYMGGGPYAKSSGPVTIR 175 Query: 165 IEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224 E VI K G+ PE++V L+ALTGD+ DNIPG+ G+G KTA LL + NL+ I A+ Sbjct: 176 REGVIAKLGVTPEEVVDLKALTGDASDNIPGVKGVGPKTAISLLNTHRNLDGIY--AALD 233 Query: 225 KQKKRRENILEY-AETARLSRKLVMLRTDVPITIPLE-HLILEDCNGPRLISFLKALEFT 282 +QK + LE E A SR L + D+P +P E L L + L L+ LE Sbjct: 234 QQKGALKKKLETDRENAYRSRMLAEILVDIP--LPSEPRLTLGAVDAAALAQRLEELELF 291 Query: 283 KLINRVAT 290 L ++A Sbjct: 292 SLARQLAA 299 >gi|313889726|ref|ZP_07823368.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN 20026] gi|313121771|gb|EFR44868.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN 20026] Length = 881 Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 178/411 (43%), Positives = 269/411 (65%), Gaps = 11/411 (2%) Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL-SLEENIYDLSGEKFNLSSP 626 +Y +++ P+ +V+++MEI GI++++ L ++ AE ++N++ +L + IYDL+GE+FN++SP Sbjct: 476 LYYKIELPLANVLAKMEIAGIKVNKLTLMEM-AEQNRNIIDALTQEIYDLAGEEFNINSP 534 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF K++ P KT +TA D+ + PI+ IL++RQ++K++STY Sbjct: 535 KQLGSILFEKMQLPLTMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYLI 594 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L ++I ++HT Y T TGRL+S +PNLQNIPI+ + G+ IR+AF +P + Sbjct: 595 GLQDYI-MEDGKIHTRYVQDLTQTGRLSSTDPNLQNIPIRMEQGRLIRKAF-TPSSDDWL 652 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKT 803 L+S+DYSQIELR+LAHI+ L F ++ DIH A +FG+ E V+ RR+AK Sbjct: 653 LLSSDYSQIELRVLAHISGDEHLIAAFNDNADIHTATAMRVFGIEKEADVTANDRRNAKA 712 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS F L+ L I R +A DYI YF R+PGI +Y++ + GYVET+F Sbjct: 713 VNFGIVYGISDFGLSNNLGISRQKARDYIDTYFERYPGIKKYMDAVVREAKDKGYVETLF 772 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR +INS ++R+ ER AIN+PIQGSAADI + AMI++ K+L D + KMLLQ Sbjct: 773 KRRRELPDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALVDGEFKAKMLLQ 832 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDE+V EVP++E+ Q++ ME A ++L VPL+ + +W E Sbjct: 833 VHDEIVLEVPKQELAAVRQLVKEIMEDA----VDLAVPLRADENSGQSWYE 879 Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 117/295 (39%), Positives = 163/295 (55%), Gaps = 17/295 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + R GL NAI GF ML +++ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFRNQSGLHTNAIYGFHLMLDHMMKRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR ++Y DYKA R K P+ Q P +R A G+P ++ + Sbjct: 57 --PTHILVAFDAGKTTFRTDMYADYKAGRAKTPDEFREQFPYIREMLTALGVPFYDLANY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDANTIVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ PE+ + L+AL GD DNIPG+ IG KT LL EYG+LE I N K K Sbjct: 175 EKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEYGSLEGIYANLDHFKASKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 +EN++ E A LS+ L + TD PITI LE L+ + N L +F + F +L Sbjct: 235 KENLMNDKEQAFLSKTLATINTDAPITIGLEDLLYQGPNLDALATFYDEMGFVQL 289 >gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13] gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27] gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13] gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27] Length = 912 Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 197/510 (38%), Positives = 305/510 (59%), Gaps = 14/510 (2%) Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD-IASIAQKWLSYTRKE--ILKSRK 525 I Y+ L GI+ + M+++Y L S ++ D I I + Y++ E K+ Sbjct: 411 ISYNFKALLNLGINFKSMYMDMMIAYHLISSQTKIDPIIPIVE----YSKLEPKDFKTAF 466 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 I ++ I+ ++ S IL ++ L L E L + + P+I V+S ME Sbjct: 467 GKINVELITAQDFSKYLSAISIGILAIYDELNYLLKKEDLYKILMENEMPLIPVLSLMER 526 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 GI+ID K S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL PSG KT Sbjct: 527 KGIEIDVQYFKNYSLELDKELLKIEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKT 586 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTG + T LE + I + +L++R+L+K+K+TY D+LP +++ + R+HT ++ Sbjct: 587 KTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTTFNQ 644 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 T TGRL+S +PNLQNIP+KTD G KIR F++ K L+S DYSQ+ELR+L ++K Sbjct: 645 IGTATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDE 704 Query: 766 PLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + + D+H + A IF + + E VS + R AK INFSIIYG +PF LA +L+IP Sbjct: 705 NLIEAYREEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIP 764 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 +A++YIK+YF ++P + + + F ++GYV+T+FGR+ + I+S +I++ E Sbjct: 765 VKDASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAE 824 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R A+N IQG+AA++ ++ M+ V+ L+D K +LLQ+HDEL+FEV E + S+I+ Sbjct: 825 RMAVNTVIQGTAAEVLKKVMVKVYDVLKD-KEEIALLLQVHDELIFEVEESSVEKYSEIL 883 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ + V L +NI + NW E Sbjct: 884 ADIMKNTVQLE---DVKLNININIGKNWAE 910 Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 146/293 (49%), Gaps = 18/293 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+D S+ +YRA++A K++ P A+ GF N L ++ + + +A+ F V Sbjct: 6 LLDVSAIMYRAYFANINFRTKNE--PTGAVYGFINTLLSIINEFKPDYMAAAFDV---KR 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 + R EIY DYK+NR PE L+ Q+P + AF I +I G+EADD++ + Sbjct: 61 SSLKRTEIYSDYKSNRQSAPEDLITQIPRIEEVLDAFNINRYKIDGYEADDVLGSLAKKI 120 Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181 K+ V I++ DKDL QLV L + EK I + VIK G+ PEK+ Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGILKTSDDVIKYLGVVPEKIPD 180 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236 L L GD D IPG+ IG K A + +Y +LE I N +K +N++ Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYDNIDNLKNIDGIGPSLIKNLVNE 240 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 + A +SR+L + TD+ IT+ E + + +L S K LEF I ++ Sbjct: 241 KDIAFMSRELAKIFTDLDITVE-EKGLQYGMDREKLYSLCKILEFKMFIKKLG 292 >gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1] gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1] Length = 974 Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 195/531 (36%), Positives = 307/531 (57%), Gaps = 59/531 (11%) Query: 464 KIGHNIKYDKLVLHRYGISMR---GFEDIMLMSYVLDSGRSSHDIA-------------- 506 K+ ++K L +GI + G++D+ L +Y+L+ +++ Sbjct: 477 KVAFDLKSMAFALDAHGIGLTSECGWQDVKLAAYLLNPQDGEVELSDVFARELGQELPTF 536 Query: 507 --SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 + +KWL+YT S +P L+ L + +++ Sbjct: 537 DDGVREKWLAYT--------ASQLP---------------------PLFESLAYTIRMQE 567 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 + +Y+ ++ P+ V+++MEITG ++++ L E+++ + + + IYDL+G FNL+ Sbjct: 568 MERLYQEVELPLAFVLAKMEITGFYVNREKLVAFGQELTERITRITQEIYDLAGTSFNLN 627 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG+ILF KL P+ KTKTG + T+A LE++ + I++ IL++R L+K++STY Sbjct: 628 SPKQLGEILFDKLGLPALKKTKTG-YSTSADVLEKL-APMHEIVQKILDYRLLAKLQSTY 685 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 + L I K T RVHT + T TGRL+S EPNLQNIPI+ + G+++RR F PT K Sbjct: 686 VEGLLKVIRKETGRVHTRFHQTLTATGRLSSSEPNLQNIPIRLEEGRRLRRVF--EPTYK 743 Query: 745 ---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 + +ADYSQIELRILAH++ L F +DIH AA++F V E+V+ MRR A Sbjct: 744 DWVIFAADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQA 803 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +NF I+YGIS F LA L IP+ EA +I+ YF +FPG+ Y+++ R+ GYV T Sbjct: 804 KAVNFGIVYGISDFGLAQNLNIPQKEAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTT 863 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 + RR + +I+S +R+ ER A+N PIQGSAAD+ + AM+ + +++ D ++ +ML Sbjct: 864 LMNRRRYLPDIHSRNYQLRSFAERTAMNTPIQGSAADLIKLAMVRIDRAMRDAQMDARML 923 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LQ+HDEL+FE P +E+ ++ +ME A + L VPLKV+ W Sbjct: 924 LQVHDELIFECPNDELAALEVLVRDNMENA----MTLSVPLKVDTAYGPTW 970 Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 110/302 (36%), Positives = 173/302 (57%), Gaps = 10/302 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG+S +YRAF+A P L+ + DG P NA+ GF M+ +L+ + + +H AV Sbjct: 94 SKLVLIDGNSILYRAFFALPPLTAR-DGTPTNAVYGFTTMILRLMSDEKP----THLAVA 148 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + YK R + P+ L+ Q PL R +A IP IEI +EADD+I T Sbjct: 149 FDKSKTTFRHADFAAYKGTRQETPDELVQQFPLARRTLEALSIPMIEIDQYEADDVIGTL 208 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKM 179 A + GF V ++S DKDL+QLV + T K E D + V +++ G+ P ++ Sbjct: 209 AKRAAEAGFDVRVVSGDKDLLQLVDDRIHVLLTRKGITEMEHFDEQAVARRYPGLKPAQV 268 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+ L GD DNIPG+PG+G KTA LL +G +E + + ++ +K RE + ++ E Sbjct: 269 IDLKGLMGDPSDNIPGVPGVGEKTALKLLTSFGTVEGVYDHLDEVQGQKLRERLEQHRED 328 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS++L + D PI + LE L E + R I++ + L+F L+++++ D+ Sbjct: 329 AFLSKRLATIACDAPIEVDLETLRYEGPDPARAIAWFRELDFRSLVDKISEEMSHDSTPT 388 Query: 300 EP 301 P Sbjct: 389 PP 390 >gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591] gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68] gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591] Length = 878 Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 177/405 (43%), Positives = 259/405 (63%), Gaps = 7/405 (1%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ +V+++MEI GI+++ + LK + +E + L + IY+L+G++FN++SPKQLG Sbjct: 477 MELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEFNINSPKQLGT 536 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF ++ P KT +TA D+ + P++ ILE+RQ++K++STY L + Sbjct: 537 ILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDA 596 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750 I + ++HT Y T TGRL+S +PNLQNIP++ + G+ IR+AF+ S L+++DY Sbjct: 597 ILE-DGKIHTRYVQDLTQTGRLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDY 655 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSII 809 SQIELR+LAHI++ L + F+ DIH A +FG+ E V+P RR+AK +NF ++ Sbjct: 656 SQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVV 715 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS F L+ L I R EA YI YF RFPGI Y+E R GYVETI+ RR Sbjct: 716 YGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRREL 775 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +INS ++RN ER AIN+PIQGSAADI + AMI++ K+L + LAT+MLLQ+HDE+V Sbjct: 776 PDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EVP E+ T ++ +ME A I+L VPL + + W E Sbjct: 836 LEVPVAELETVKAMVKETMESA----ISLSVPLIADENEGSTWYE 876 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 118/316 (37%), Positives = 166/316 (52%), Gaps = 24/316 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKES 56 K+N L L+DGSS +RAF+A L + D GL NAI GF ML +++ Sbjct: 2 KKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPTGLHTNAIYGFNLMLDHMMKRIE--- 55 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116 +H V FD TFR E+Y DYKA R K P+ Q P +R A G+ E+ +E Sbjct: 56 -PTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDAMGVKHYELAQYE 114 Query: 117 ADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIK 170 ADDII T +AE+ F VTI+S DKDL+QL T + + K E+ ++++ Sbjct: 115 ADDIIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLME 174 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K GI P + + L+AL GD DNIPG+ IG KT LL E+G+L+ I N +K K + Sbjct: 175 KMGITPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLTEFGSLDGIYENIDSMKASKMK 234 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 EN++ E A LSR L + T PI I L+ ++ + L F + F +L ++ T Sbjct: 235 ENLIADKEKAFLSRTLATIDTQAPIEIGLDDIVYQGPKVDELGQFYDDMGFKQLRAQLGT 294 Query: 291 TYDCDAANIEPVVLDI 306 T ++ E VLD Sbjct: 295 T-----SSQEEAVLDF 305 >gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus agalactiae 2603V/R] gi|25010498|ref|NP_734893.1| DNA polymerase I [Streptococcus agalactiae NEM316] gi|76786985|ref|YP_329109.1| DNA polymerase I [Streptococcus agalactiae A909] gi|77406448|ref|ZP_00783505.1| DNA polymerase I [Streptococcus agalactiae H36B] gi|77411656|ref|ZP_00787996.1| DNA polymerase I [Streptococcus agalactiae CJB111] gi|22533407|gb|AAM99295.1|AE014209_8 DNA polymerase I [Streptococcus agalactiae 2603V/R] gi|23094851|emb|CAD46069.1| DNA polymerase I [Streptococcus agalactiae NEM316] gi|76562042|gb|ABA44626.1| DNA polymerase I [Streptococcus agalactiae A909] gi|77162300|gb|EAO73271.1| DNA polymerase I [Streptococcus agalactiae CJB111] gi|77174950|gb|EAO77762.1| DNA polymerase I [Streptococcus agalactiae H36B] Length = 880 Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 207/558 (37%), Positives = 318/558 (56%), Gaps = 34/558 (6%) Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 +TI+ +V Q++ K L+K I +Y + K K++L+R+ I + Sbjct: 347 DTIYATSNVSLLQEALFKKALSKPIKTY---------------DFKRSKVLLNRFNIDLP 391 Query: 485 --GFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQV 538 F D L Y+L S + +++IA+ + L K K +IP ++ Sbjct: 392 EPAF-DTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP----EKTRF 445 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 EH + V++ + +L + + +++P+ +V+++MEI GI++ ++ L ++ Sbjct: 446 LEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEM 505 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 + E K + +L + IY+L+G++FN++SPKQLG +LF L P KT +TA D+ Sbjct: 506 AIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVL 565 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 + +P++ ILE+RQ++K++STY L ++I ++HT Y T TGRL+S +P Sbjct: 566 ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDP 624 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 NLQNIP++ + G+ IR+AF+ S L+S+DYSQIELR+LAHI+K L F+ DI Sbjct: 625 NLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADI 684 Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 H A +FG+ E V+P RR+AK +NF I+YGIS F L+ L IPR A YI YF Sbjct: 685 HTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYF 744 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+PGI Y+E + GYVET+F RR +INS +IR ER AIN+PIQGSA Sbjct: 745 ERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSA 804 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI++ + L+ +KMLLQ+HDE+V EVP EEI +++ +ME A I Sbjct: 805 ADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESA----I 860 Query: 957 NLRVPLKVNIKVSNNWQE 974 +L VPL + W E Sbjct: 861 SLSVPLIADENAGETWYE 878 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 114/287 (39%), Positives = 155/287 (54%), Gaps = 20/287 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M +N L L+DGSS +RAF+A L + + + GL NAI GF ML +L + Sbjct: 1 MTNKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 SH V FD TFR E+Y DYK R K P+ Q P +R GI E++ + Sbjct: 57 --PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHY 114 Query: 116 EADDIIATYTYIAE--KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T AE E F +T++S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P + + L+AL GD DNIPG+ IG KT LL EYG+LE I N +KQ K Sbjct: 175 EKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276 +EN++ E A LS+ L + PITI LE ++ +GP+ I L Sbjct: 235 KENLINDKEQAFLSKTLATINIASPITIGLEDIL---YSGPQDIKAL 278 >gi|77408763|ref|ZP_00785493.1| DNA polymerase I [Streptococcus agalactiae COH1] gi|77172608|gb|EAO75747.1| DNA polymerase I [Streptococcus agalactiae COH1] Length = 880 Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 207/558 (37%), Positives = 317/558 (56%), Gaps = 34/558 (6%) Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 +TI+ V Q++ K L+K I +Y + K K++L+R+ I + Sbjct: 347 DTIYATSDVSLLQEALFKKALSKPIKTY---------------DFKRSKVLLNRFNIDLP 391 Query: 485 --GFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQV 538 F D L Y+L S + +++IA+ + L K K +IP ++ Sbjct: 392 EPAF-DTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP----EKTRF 445 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 EH + V++ + +L + + +++P+ +V+++MEI GI++ ++ L ++ Sbjct: 446 LEHLAKKVKVLVDSEANVMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEM 505 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 + E K + +L + IY+L+G++FN++SPKQLG +LF L P KT +TA D+ Sbjct: 506 AIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVL 565 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 + +P++ ILE+RQ++K++STY L ++I ++HT Y T TGRL+S +P Sbjct: 566 ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDP 624 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 NLQNIP++ + G+ IR+AF+ S L+S+DYSQIELR+LAHI+K L F+ DI Sbjct: 625 NLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADI 684 Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 H A +FG+ E V+P RR+AK +NF I+YGIS F L+ L IPR A YI YF Sbjct: 685 HTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYF 744 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+PGI Y+E + GYVET+F RR +INS +IR ER AIN+PIQGSA Sbjct: 745 ERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSA 804 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI++ + L+ +KMLLQ+HDE+V EVP EEI +++ +ME A I Sbjct: 805 ADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIKELVTKTMESA----I 860 Query: 957 NLRVPLKVNIKVSNNWQE 974 +L VPL + W E Sbjct: 861 SLSVPLIADENAGETWYE 878 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 115/287 (40%), Positives = 156/287 (54%), Gaps = 20/287 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M +N L L+DGSS +RAF+A L + + + GL NAI GF ML +L + Sbjct: 1 MTNKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 SH V FD TFR E+Y DYK R K P+ Q P +R GI E++ + Sbjct: 57 --PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHY 114 Query: 116 EADDIIATYTYIAE--KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T AE KE F +T++S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLAKQAEASKEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P + + L+AL GD DNIPG+ IG KT LL EYG+LE I N +KQ K Sbjct: 175 EKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276 +EN++ E A LS+ L + PITI LE ++ +GP+ I L Sbjct: 235 KENLINDKEQAFLSKTLATINIASPITIGLEDIL---YSGPQDIKAL 278 >gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14] Length = 878 Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 178/405 (43%), Positives = 259/405 (63%), Gaps = 7/405 (1%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ +V+++MEI GI+++ + LK + +E + L + IY+L+G++FN++SPKQLG Sbjct: 477 MELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEFNINSPKQLGI 536 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF ++ P KT +TA D+ + P++ ILE+RQ++K++STY L + Sbjct: 537 ILFEEMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDA 596 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750 I + ++HT Y T TGRL+S +PNLQNIP++ + G+ IR+AF+ S L+++DY Sbjct: 597 ILE-DGKIHTRYVQDLTQTGRLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDY 655 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSII 809 SQIELR+LAHI++ L + F+ DIH A +FG+ E V+P RR+AK +NF ++ Sbjct: 656 SQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGVV 715 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS F L+ L I R EA YI YF RFPGI Y+E R GYVETI+ RR Sbjct: 716 YGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRREL 775 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +INS ++RN ER AIN+PIQGSAADI + AMI++ K+L + LAT+MLLQ+HDE+V Sbjct: 776 PDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EVP E+ T ++ +ME A I+L VPL V+ W E Sbjct: 836 LEVPVAELETVKAMVKETMESA----ISLSVPLIVDENEGPTWYE 876 Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 118/316 (37%), Positives = 166/316 (52%), Gaps = 24/316 (7%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKES 56 K+N L L+DGSS +RAF+A L + D GL NAI GF ML +++ Sbjct: 2 KKNKLLLIDGSSVAFRAFFA---LYNQIDRFKSPTGLHTNAIYGFNLMLDHMMKRIE--- 55 Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116 +H V FD TFR E+Y DYKA R K P+ Q P +R A G+ E+ +E Sbjct: 56 -PTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDAMGVKHYELDQYE 114 Query: 117 ADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIK 170 ADDII T +AE+ F VTI+S DKDL+QL T + + K E+ ++++ Sbjct: 115 ADDIIGTLDKMAERTEIPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLME 174 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K GI P + + L+AL GD DNIPG+ IG KT LL E+G+L+ I N +K K + Sbjct: 175 KMGITPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLTEFGSLDGIYENIDSMKASKMK 234 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 EN++ E A LSR L + T PI I L+ ++ + L F + F +L ++ T Sbjct: 235 ENLIADKEKAFLSRTLATIDTQAPIEIGLDDIVYQGPKVDELGQFYDDMGFKQLRAQLGT 294 Query: 291 TYDCDAANIEPVVLDI 306 T ++ E VLD Sbjct: 295 T-----SSQEEAVLDF 305 >gi|269797839|ref|YP_003311739.1| DNA polymerase I [Veillonella parvula DSM 2008] gi|269094468|gb|ACZ24459.1| DNA polymerase I [Veillonella parvula DSM 2008] Length = 873 Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 184/486 (37%), Positives = 286/486 (58%), Gaps = 23/486 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L++Y+LD R+++ + +++ S+P I+ V + Sbjct: 406 DMSLIAYLLDPTRTNYGYLYLTERF--------------SVP--SIASGSVDVECVSMVK 449 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 +L + E+L +YE ++ P+I + ME GI ID + L + + + L Sbjct: 450 ALLAMNEAACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTEKLAETTTRFKEELA 509 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 +++ IY+L+GE FN++SPKQLG ILF K+ P KTKTG + T A+ L+ + ++PI Sbjct: 510 QVQQEIYELAGENFNINSPKQLGVILFEKMNLPIIKKTKTG-YSTDAEVLDMLRH-ESPI 567 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 ++ IL +R ++K+ STY + L IN +T+R+HT ++ T TGRL+S +PNLQNIP++T Sbjct: 568 VEKILAYRSVAKLVSTYCEGLAVLINDKTRRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 627 Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 + G++IR F L+SADYSQIELRILAH++ L + F DIHR AAE+ Sbjct: 628 EKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVL 687 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 G + V+ + R HAK INF IIYGIS F L+ L I R EA +YI YF R+P + EY+ Sbjct: 688 GKAQDDVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYM 747 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 ++ + G V T+FGR+ +INS + R+ ER A+N PIQG+AADI + AM Sbjct: 748 DRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQ 807 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 + + LE+ +++LLQ+HDELV EV E+ +++ ++M+ + L+VPL V++ Sbjct: 808 MEQKLEEQNFKSRLLLQVHDELVLEVVNSELEAIEELLRNTMQSV----VELQVPLIVDV 863 Query: 967 KVSNNW 972 + NW Sbjct: 864 HHAENW 869 Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 121/363 (33%), Positives = 197/363 (54%), Gaps = 29/363 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DGSS ++RAF+A P L + G P NA+ GF ML KL + E + AV FD Sbjct: 4 LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYE----EINPDYIAVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR E+Y +YK NRP PE L PQ L++ +A GI IE +GFE DDI+ + + Sbjct: 59 KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSLSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AV II+ D+D +QLV+ + ++ T K ++ ++++ + +G P+K++ + Sbjct: 119 KFGAPEMAVQIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVIEM 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +AL GDS DNIPG+PG+G KTA L+ EYGNLE++ + I KK +E ++E E A L Sbjct: 179 KALMGDSSDNIPGVPGVGEKTALKLITEYGNLESVYEHIEDISGKKLKERLVENKELAFL 238 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI--- 299 SR+L ++TD+ ++ +E + ++ + + + L FTKL R+ + A Sbjct: 239 SRELATIKTDMELSYKVEDFV-QNFHTSEVQPLFETLGFTKLTPRIVQVMGGEEAAFGDP 297 Query: 300 ----------------EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINS 343 + VL + ++K +A+ +D T +T + LS+ + + + Sbjct: 298 GSLFAPQEEISLDDLADAKVLTADFYKDKTVAVHVILDGKTPFRTVTNTYLSNGDTIVKT 357 Query: 344 EQT 346 + T Sbjct: 358 DDT 360 >gi|257466192|ref|ZP_05630503.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] Length = 882 Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 198/514 (38%), Positives = 306/514 (59%), Gaps = 16/514 (3%) Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 G YD L + G S + M+++Y L S ++ D SI Q +L K I + K Sbjct: 378 GKLYTYDLKELLKLGFSFQKPVYDMMIAYHLVSSQTKEDYTSIGQYYL----KTIAEDEK 433 Query: 526 SSIPIDKISDSQVQEHA---IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + KI + + ++ S ++ L L ++L +V + P+I V++ Sbjct: 434 TVFAKQKIETLSIDSYGNFLLKRSQILYSCLEPLEKDLKEKELENVLWETELPLIPVLAS 493 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI+ID+ ++ S E+++ L+ LE+ I+ +GE+FN++SPKQLG+ILF KL P+G Sbjct: 494 MEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEAGEEFNINSPKQLGEILFLKLNLPTG 553 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T + LE ++ I N+LE+R+L+K+K+TY D +P + K R+HT Sbjct: 554 KKTKTG-FSTDVEVLENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMV-KFDDRIHTC 611 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y T+TGRL+S +PNLQNIP+KT+ G +IR+ FI+ KL+S DYSQ+ELR+LA ++ Sbjct: 612 YHQIGTVTGRLSSSDPNLQNIPVKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALS 671 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 K L + ++ D+H + A +IF + E+VS + R AK INFSIIYG +PF LA +L Sbjct: 672 KDENLVKAYQEKQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKEL 731 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I +AA+YIKRYF ++P + ++ + F Q+GYVET FGR+ D I+S ++N Sbjct: 732 GISVKDAAEYIKRYFAQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKN 791 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER A+N +QG+AA+I ++ MI ++ L K +LLQ+HDEL+FE+ EE + Sbjct: 792 QAERMAVNTVVQGTAAEILKKVMIKIYSWLLG-KTDIYLLLQVHDELIFEIQEERVEEYV 850 Query: 942 QIIVHSMEKACLPKINL-RVPLKVNIKVSNNWQE 974 + + + M+ I L V L+VN + N W E Sbjct: 851 KTLTNFMKNT----IQLEEVELEVNTNIGNTWAE 880 Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 99/301 (32%), Positives = 153/301 (50%), Gaps = 11/301 (3%) Query: 8 FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 L+D S+ +YRA+YA ++ + +P A+ GF L++LL+ E +A+ F + + Sbjct: 5 LLLDVSAMMYRAYYAN--MNMRTKEMPTGAVYGFLLTLFQLLKEYEPEYMAAAFDIKRSH 62 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 R E+Y +YK+NR PE LL Q+P + AFGI I+I+G+EADD++ + + Sbjct: 63 LK---RTELYAEYKSNRDSAPEDLLKQIPYIEAVLDAFGIQRIKIEGYEADDVLGSLSTK 119 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 K+G VTI++ DKD+ QL+ +Y KE E V + PEK+ L L G Sbjct: 120 LSKKGIPVTIVTGDKDISQLLDENIEIYLLGKEVLKTREDVKNYIDVYPEKIPDLFGLIG 179 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEYAETARL 242 DS D IPG+ IG K A +L +Y NLE I N ++ + K E + E E A L Sbjct: 180 DSSDCIPGVRKIGPKKAVPMLDKYENLEGIYENIDKLIEIPGVGKTLIEIMKEDKELAFL 239 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 SR L + ++ + LE L E L + LEF + R+ + + + V Sbjct: 240 SRTLAKIEKNLDFSFSLEDLYFEK-KEEALREIFQKLEFKSFLKRLEQKEEKEQIKVAEV 298 Query: 303 V 303 + Sbjct: 299 I 299 >gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 920 Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 180/491 (36%), Positives = 295/491 (60%), Gaps = 17/491 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D + Y+L+ + ++ +A+ +L T + SR + + D+ E A + Sbjct: 437 DGGVAGYLLNPLKDTYGYDDLARDYLGLT----VPSRADLLAKADLGDALWNEDARAVTC 492 Query: 548 VILQ---LWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 +W P +L + +Y+ ++ P+I + ME G+++++ L++ Sbjct: 493 ACYMAYTVWKAAAPLTRQLKDTGMYALYKEIEMPLIYSLYHMEQEGVKVERAELEEYGNR 552 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + ++ LE+ IY +G++FN++SPKQLG+ILF +K P G KTKTG + T A L+++ Sbjct: 553 LKVRIVDLEQEIYRDTGKEFNINSPKQLGEILFEDMKMPGGKKTKTG-YSTAADVLDKL- 610 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+++ IL++RQL+K+ STYA+ L +I + R+H ++ T TGR++S EPNLQ Sbjct: 611 APDYPVVQKILDYRQLTKLNSTYAEGLAAYIGE-DGRIHGKFNQTITATGRISSTEPNLQ 669 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++ +LG++IR+ F+ + ADYSQIELRILAH++ L + + ++ DIH + Sbjct: 670 NIPVRMELGREIRKVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAYRSAQDIHAIT 729 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A+E+F V + +V+P RR+AK +NF I+YGIS F L+ L I R EA +YI +YF +PG Sbjct: 730 ASEVFHVPLGEVTPLQRRNAKAVNFGIVYGISAFGLSEDLSISRKEAVEYINKYFETYPG 789 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + +++ + ++ GYV T++GRR E+ S R ER A+N+PIQGSAADI + Sbjct: 790 VKIFLDGLVSQGKEQGYVTTLYGRRRPIPELKSANFMQRQFGERVAMNSPIQGSAADIMK 849 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI+V + L L ++++LQIHDEL+ E E+EI T +I+V M+ A L+V Sbjct: 850 IAMIAVDRELRARNLKSRIVLQIHDELLIETAEDEIGTVKEILVDKMKHAA----ELKVS 905 Query: 962 LKVNIKVSNNW 972 L+V +V +W Sbjct: 906 LEVEAEVGRSW 916 Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 105/307 (34%), Positives = 174/307 (56%), Gaps = 19/307 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG S + RAFY P L+ +GL NA+ GF N+++K+L+ + A H AV Sbjct: 2 DKLVLIDGHSILNRAFYGVPDLTNS-EGLHTNAVYGFLNIMFKILEEEK----ADHLAVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+++Y YK R +PE L Q+ L++ A G+P + + G+EADDI+ T Sbjct: 57 FDLKEPTFRHKMYDAYKGTRKPMPEELHQQVDLMKEVLTAMGVPILTLAGYEADDILGTV 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDT-VKEE-KIDIEHVIKKWGIP 175 ++ +G V+++S D+DL+QL P T T VK+ D+E +++ + Sbjct: 117 ARKSQSQGIDVSVVSGDRDLLQLSDEHIKIRIPKTSRGGTEVKDYYPADVE---REYQVT 173 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P + + ++AL GDS DNIPG+P IG KTA L+ Y ++EN + IK + R+ + E Sbjct: 174 PTEFIDVKALMGDSSDNIPGVPSIGEKTATSLIAAYKSIENAYAHLDEIKPPRARKALEE 233 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR--VATTYD 293 + + AR+S++L + TD P+ E +++ P ++K LEF +++R + D Sbjct: 234 HYDMARMSKELATICTDCPVEFNYEDTRIDNLYTPEAYQYMKRLEFKSILSRFDASAMGD 293 Query: 294 CDAANIE 300 A+++E Sbjct: 294 VSASSLE 300 >gi|315917350|ref|ZP_07913590.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] gi|313691225|gb|EFS28060.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] Length = 884 Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 198/514 (38%), Positives = 306/514 (59%), Gaps = 16/514 (3%) Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 G YD L + G S + M+++Y L S ++ D SI Q +L K I + K Sbjct: 380 GKLYTYDLKELLKLGFSFQKPVYDMMIAYHLVSSQTKEDYTSIGQYYL----KTIAEDEK 435 Query: 526 SSIPIDKISDSQVQEHA---IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + KI + + ++ S ++ L L ++L +V + P+I V++ Sbjct: 436 TVFAKQKIETLSIDSYGNFLLKRSQILYSCLEPLEKDLKEKELENVLWETELPLIPVLAS 495 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI+ID+ ++ S E+++ L+ LE+ I+ +GE+FN++SPKQLG+ILF KL P+G Sbjct: 496 MEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEAGEEFNINSPKQLGEILFLKLNLPTG 555 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T + LE ++ I N+LE+R+L+K+K+TY D +P + K R+HT Sbjct: 556 KKTKTG-FSTDVEVLENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMV-KFDDRIHTC 613 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y T+TGRL+S +PNLQNIP+KT+ G +IR+ FI+ KL+S DYSQ+ELR+LA ++ Sbjct: 614 YHQIGTVTGRLSSSDPNLQNIPVKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALS 673 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 K L + ++ D+H + A +IF + E+VS + R AK INFSIIYG +PF LA +L Sbjct: 674 KDENLVKAYQEKQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKEL 733 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I +AA+YIKRYF ++P + ++ + F Q+GYVET FGR+ D I+S ++N Sbjct: 734 GISVKDAAEYIKRYFAQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKN 793 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER A+N +QG+AA+I ++ MI ++ L K +LLQ+HDEL+FE+ EE + Sbjct: 794 QAERMAVNTVVQGTAAEILKKVMIKIYSWLLG-KTDIYLLLQVHDELIFEIQEERVEEYV 852 Query: 942 QIIVHSMEKACLPKINL-RVPLKVNIKVSNNWQE 974 + + + M+ I L V L+VN + N W E Sbjct: 853 KTLTNFMKNT----IQLEEVELEVNTNIGNTWAE 882 Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 99/301 (32%), Positives = 153/301 (50%), Gaps = 11/301 (3%) Query: 8 FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 L+D S+ +YRA+YA ++ + +P A+ GF L++LL+ E +A+ F + + Sbjct: 7 LLLDVSAMMYRAYYAN--MNMRTKEMPTGAVYGFLLTLFQLLKEYEPEYMAAAFDIKRSH 64 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 R E+Y +YK+NR PE LL Q+P + AFGI I+I+G+EADD++ + + Sbjct: 65 LK---RTELYAEYKSNRDSAPEDLLKQIPYIEAVLDAFGIQRIKIEGYEADDVLGSLSTK 121 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 K+G VTI++ DKD+ QL+ +Y KE E V + PEK+ L L G Sbjct: 122 LSKKGIPVTIVTGDKDISQLLDENIEIYLLGKEVLKTREDVKNYIDVYPEKIPDLFGLIG 181 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEYAETARL 242 DS D IPG+ IG K A +L +Y NLE I N ++ + K E + E E A L Sbjct: 182 DSSDCIPGVRKIGPKKAVPMLDKYENLEGIYENIDKLIEIPGVGKTLIEIMKEDKELAFL 241 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 SR L + ++ + LE L E L + LEF + R+ + + + V Sbjct: 242 SRTLAKIEKNLDFSFSLEDLYFEK-KEEALREIFQKLEFKSFLKRLEQKEEKEQIKVAEV 300 Query: 303 V 303 + Sbjct: 301 I 301 >gi|315585859|gb|ADU40240.1| DNA-directed DNA polymerase I [Helicobacter pylori 35A] Length = 893 Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 287/992 (28%), Positives = 466/992 (46%), Gaps = 128/992 (12%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVSGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN GI GIG K A LLQ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGIKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E+A LS++L L ++ C P LK + K ++T D + Sbjct: 237 DKESAFLSKELATLERGC-----IKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLE 291 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 + P++LD T +E D+ K S+ L N+E P FLE+L Sbjct: 292 NSPT-PLILDNTPT------LENTPASDSAPKKSRLIVLE------NTE--PLSAFLEKL 336 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 + +S +I ++ D K +A+A D Sbjct: 337 K---------NSNARIF-------------------MRLALDK----EKKVLALAFLYED 364 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YDK 473 Q + E +F S+ Q++ FF+ +H IGH++K Sbjct: 365 QGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHDLKPLLS 407 Query: 474 LVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIP 529 + +Y +S+ +D +++++ + + D E+LK ++ IP Sbjct: 408 FLKAKYQVSVEDIRIQDTQILAFLKNPEKVGFD--------------EVLKQYLKEEWIP 453 Query: 530 IDKISDSQVQEHAIE------NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 +KI D + + A + N + +L + E LL + ++ P + V+ M Sbjct: 454 HEKIKDFKTKNKAEKLELLSVELNALKRLCEYFEKGGLEEGLLALAREVETPFVKVLMGM 513 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E G +ID K++ E L LE I +L G FNL+SPKQL +IL+ KL+ P Sbjct: 514 EFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKN- 572 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 K+ + K+ + L++ +P I ILE+R+L+K+ +TY L + + ++HT + Sbjct: 573 KSHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTF 626 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIA 762 T TGRL+S PNLQNIP+++ G IR+ FIS + L+ DYSQIELR+LAH + Sbjct: 627 IQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFISSSKEYCLLGVDYSQIELRLLAHFS 686 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L F DIH + +FG E ++ + R AK+INF ++YG+ +L+ L Sbjct: 687 QDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLN 743 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IP +EA YI+ YF RFP I +Y+ + K + + T+ GR +D + I+ Sbjct: 744 IPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFVGV-NDHIKGN 802 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ + Sbjct: 803 YLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNALELQR 861 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I + P LRVPL+ + ++ W E Sbjct: 862 EIQRILNDEVYP---LRVPLETSAFIAKRWNE 890 >gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 911 Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 198/510 (38%), Positives = 306/510 (60%), Gaps = 14/510 (2%) Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD-IASIAQKWLSYTRKE--ILKSRK 525 I Y+ L GIS + M+++Y L S ++ D I I + Y++ E K+ Sbjct: 410 ISYNFKALLNLGISFKSMYMDMMIAYHLISSQTKIDPIIPITE----YSKLEPKDFKTAF 465 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 + ++ I+ ++ + S IL ++ L L E L + + P+I V+S ME Sbjct: 466 GKVNVELITAQDFSKYLSDISIGILAIYDELNYLLKKEDLYKILMENEMPLIPVLSLMER 525 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 GI+ID K S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL PSG KT Sbjct: 526 KGIEIDVQYFKNYSLELEKELLKVEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKT 585 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTG + T LE + I + +L++R+L+K+K+TY D+LP +++ + R+HT ++ Sbjct: 586 KTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTSFNQ 643 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 T TGRL+S EPNLQNIP+KTD G KIR FI+ K L+S DYSQ+ELR+L ++K Sbjct: 644 IGTATGRLSSSEPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDE 703 Query: 766 PLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + + D+H + A IF + + E VS + R AK INFSIIYG +PF LA +L+IP Sbjct: 704 NLIEAYREEKDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIP 763 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 +A++YIK+YF ++P + + ++ F ++GYV+T+FGR+ + I+S +I++ E Sbjct: 764 VKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAE 823 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R A+N IQG+AA++ ++ M+ V+ L+D K +LLQ+HDEL+FEV + + S I+ Sbjct: 824 RMAVNTVIQGTAAEVLKKVMVKVYDILKD-KEDIALLLQVHDELIFEVEKNSVEKYSGIL 882 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ + V L +NI + NW E Sbjct: 883 ADIMKNTVQLE---DVKLNININIGKNWAE 909 Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 93/293 (31%), Positives = 147/293 (50%), Gaps = 18/293 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+D S+ +YRA++A K++ P A+ GF N L ++ + + +A+ F V Sbjct: 6 LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINEFKPDYMAAAFDV---KR 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 + R EIY DYK+NR PE L+ Q+P + A +AF I +I+G+EADD++ + Sbjct: 61 SSLKRTEIYSDYKSNRQSAPEDLIKQIPRIEEALEAFNINRYKIEGYEADDVLGSLAKKL 120 Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181 K+ V I++ DKDL QLV L + EK + V+ G+ PEK+ Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGTLKTSDDVVNYLGVVPEKIPD 180 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236 L L GD D IPG+ IG K A + +Y +LE I N +K +N++ Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALSIFSQYDSLEKIYENIDNLKSIDGIGPSLIKNLINE 240 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 + A +SR+L + T++ IT+ E + + +L S K LEF I ++ Sbjct: 241 KDIAFMSRELAKIFTNLDITVE-EDGLQYGMDREKLYSLCKVLEFKMFIKKLG 292 >gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33] gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33] gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84] gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7] gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407] gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Streptococcus suis 05ZYH33] gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Streptococcus suis 98HAH33] gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84] gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407] gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7] gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1] Length = 878 Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 177/405 (43%), Positives = 257/405 (63%), Gaps = 7/405 (1%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ +V+++MEI GI+++ + LK + +E + L + IY+L+G++FN++SPKQLG Sbjct: 477 MELPLANVLAKMEIAGIKVEAETLKAMQSENEVLIDQLTKEIYELAGQEFNINSPKQLGT 536 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF + P KT +TA D+ + P++ ILE+RQ++K++STY L + Sbjct: 537 ILFEDMGLPLEYTKKTKTGYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDA 596 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750 I ++HT Y T TGRL+S +PNLQNIP++ + G+ IR+AF+ S L+++DY Sbjct: 597 I-LEDGKIHTRYVQDLTQTGRLSSTDPNLQNIPVRLEQGRLIRKAFVPSLENSVLLASDY 655 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSII 809 SQIELR+LAHI++ L + F+ DIH A +FG+ E V+P RR+AK +NF ++ Sbjct: 656 SQIELRVLAHISQDQHLIEAFQQGADIHTSTAMRVFGIEKAEYVTPNDRRNAKAVNFGVV 715 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YGIS F L+ L I R EA YI YF RFPGI Y+E R GYVETI+ RR Sbjct: 716 YGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIYKRRREL 775 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 +INS ++RN ER AIN+PIQGSAADI + AMI++ K+L + LAT+MLLQ+HDE+V Sbjct: 776 PDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIV 835 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EVP E+ T ++ +ME A I+L VPL + + W E Sbjct: 836 LEVPVAELETVKAMVKETMESA----ISLSVPLIADENEGSTWYE 876 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 119/315 (37%), Positives = 169/315 (53%), Gaps = 22/315 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 K+N L L+DGSS +RAF+A L + + +GL NAI GF ML +++ R E Sbjct: 2 KKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNANGLHTNAIYGFNLMLDHMMK--RIEP- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR E+Y DYKA R K P+ Q P +R A G+ E+ +EA Sbjct: 57 -THILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPFIRQMLDAMGVKHYELDQYEA 115 Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171 DDII T +AE+ F VTI+S DKDL+QL T + + K E+ ++++K Sbjct: 116 DDIIGTLDKMAERTDIPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEK 175 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 GI P + + L+AL GD DNIPG+ IG KT LL E+G+L+ I N +K K +E Sbjct: 176 MGISPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLTEFGSLDGIYENIDSMKASKMKE 235 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 N++ E A LSR L + T PI I L+ ++ + L F + F +L ++ TT Sbjct: 236 NLIADKEKAFLSRTLATIDTQAPIEIGLDDIVYQGPKVDELGQFYDDMGFKQLRAQLGTT 295 Query: 292 YDCDAANIEPVVLDI 306 ++ E VLD Sbjct: 296 -----SSQEEAVLDF 305 >gi|329767425|ref|ZP_08258950.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341] gi|328836114|gb|EGF85805.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341] Length = 879 Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 195/533 (36%), Positives = 314/533 (58%), Gaps = 26/533 (4%) Query: 454 KKFFENE--------HFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHD 504 ++FF NE F+K ++ K + R G+++ G D+ ++SY++D + + Sbjct: 355 EQFFTNEFVVEYLQSEFVKTVYDFKKILFIAKRNGVNINGEVFDVKIVSYLIDVNAKT-E 413 Query: 505 IASIAQKWLSY---TRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 I I +L + +EI K K ++P S + + E + I + L+ KL Sbjct: 414 IDKIVFNYLGKIIKSDEEIYGKGAKRTLP----SQDVINPYIAEVAESIALMKPLMEEKL 469 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 E + +Y+ ++ + V++ ME GI + + L+++SAE + + +LE +IY L+G + Sbjct: 470 AEENMTDLYKDIEIKVAKVLANMEFEGIHVSKKALEEMSAEFDERIKTLESSIYTLAGSE 529 Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 FN++SPKQLG +LF L P KTKTG + T + LEQ+ + II I+E+R ++K+ Sbjct: 530 FNIASPKQLGVVLFEDLGLPPIKKTKTG-YSTAVEVLEQLQHS-HEIIPLIMEYRTITKL 587 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 STYA L I R ++HT Y TGRL+S+ PNLQNIP + + G+KIR+AF+ Sbjct: 588 NSTYAKGLVKDIT-REGKIHTRYEQTLAQTGRLSSVNPNLQNIPTRIEEGKKIRKAFVPA 646 Query: 741 PTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 ++I S DYSQIELR+LAHIA+ + F++ +DIH A+++ GV++++V+ MRR Sbjct: 647 SEDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTASDVNGVSLDQVTSSMRR 706 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK +NF I+YGIS F L+ L I R A ++I +Y F G+ +Y+ F +++GYV Sbjct: 707 EAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIDKYLETFKGVDKYMTDIVEFAKEHGYV 766 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 ET+F RR +IN+ + N+N R A+N+PIQG+AADI + AM++V + LE K+ K Sbjct: 767 ETLFNRRRALPDINAKNKIVANLNARIAMNSPIQGTAADIIKIAMVNVFEYLEKTKVDAK 826 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +LLQ+HDEL+F+V ++ ++ ++ ME+A NL V LK +W Sbjct: 827 LLLQVHDELIFDVNKDIEEDFTKEMIKIMEEAA----NLDVQLKAEASSGASW 875 Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 125/305 (40%), Positives = 172/305 (56%), Gaps = 13/305 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + + L+DG+S YRAFYA P L K GL N++ GF ML K+L +++ + V Sbjct: 2 DKIILIDGNSLSYRAFYAMPALKNKK-GLYTNSVYGFTLMLEKILADTK----PKYALVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR++ Y YK R K P L+ Q VR ++GI E +EADDII++Y Sbjct: 57 FDKGKQTFRHQSYEAYKGTRDKTPSELVEQFGYVRELLDSYGIKYEEHFDYEADDIISSY 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPPEKM 179 IAEKEG V I++ DKDL QL S +Y T K DI E + +K+G+ PE++ Sbjct: 117 AKIAEKEGLEVIIVTGDKDLTQLASENITIYYT-KRGVTDIDYYTPEFIAEKYGLTPEQI 175 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 V ++ L GD DNIPGI G+G KTA LL EY +EN+L N I KK +E + E E Sbjct: 176 VDMKGLMGDKSDNIPGIAGVGEKTAIKLLTEYKTVENVLENIDNISGKKLKERLTEGRED 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLIL-EDCNGPR-LISFLKALEFTKLINRVATTYDCDAA 297 A LS+KL + T+VP+ LE L E+ R L L+ + F + +++ +T D D A Sbjct: 236 ALLSKKLATIYTEVPVDNKLEDLTYSENIELKRELFEKLEFVSFLRKLSQETSTEDVDVA 295 Query: 298 NIEPV 302 N E V Sbjct: 296 NEETV 300 >gi|169833568|ref|YP_001693553.1| DNA polymerase I [Streptococcus pneumoniae Hungary19A-6] gi|168996070|gb|ACA36682.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Hungary19A-6] Length = 877 Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 204/515 (39%), Positives = 299/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R YVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 911 Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 198/510 (38%), Positives = 306/510 (60%), Gaps = 14/510 (2%) Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD-IASIAQKWLSYTRKE--ILKSRK 525 I Y+ L GIS + M+++Y L S ++ D I I + Y++ E K+ Sbjct: 410 ISYNFKALLNLGISFKSMYMDMMIAYHLISSQTKIDPIIPITE----YSKLEPKDFKTAF 465 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 + ++ I+ ++ + S IL ++ L L E L + + P+I V+S ME Sbjct: 466 GKVNVELITAQDFSKYLSDISIGILAIYDELNYLLKKEDLYKILMENEMPLIPVLSLMER 525 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 GI+ID K S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL PSG KT Sbjct: 526 KGIEIDVQYFKNYSLELEKELLKVEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKT 585 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTG + T LE + I + +L++R+L+K+K+TY D+LP +++ + R+HT ++ Sbjct: 586 KTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTSFNQ 643 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 T TGRL+S EPNLQNIP+KTD G KIR FI+ K L+S DYSQ+ELR+L ++K Sbjct: 644 IGTATGRLSSSEPNLQNIPVKTDDGIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDE 703 Query: 766 PLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + + D+H + A IF + + E VS + R AK INFSIIYG +PF LA +L+IP Sbjct: 704 NLIEAYREEKDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIP 763 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 +A++YIK+YF ++P + + ++ F ++GYV+T+FGR+ + I+S +I++ E Sbjct: 764 VKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAE 823 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R A+N IQG+AA++ ++ M+ V+ L+D K +LLQ+HDEL+FEV + + S I+ Sbjct: 824 RMAVNTVIQGTAAEVLKKVMVKVYDILKD-KEDIALLLQVHDELIFEVEKNSVEKYSGIL 882 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ + V L +NI + NW E Sbjct: 883 ADIMKNTVQLE---DVKLNININIGKNWAE 909 Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/293 (31%), Positives = 147/293 (50%), Gaps = 18/293 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+D S+ +YRA++A K++ P A+ GF N L ++ + + +A+ F V Sbjct: 6 LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINEFKPDYMAAAFDV---KR 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 + R EIY DYK+NR PE L+ Q+P + A +AF I +I+G+EADD++ + Sbjct: 61 SSLKRTEIYSDYKSNRQSAPEDLIKQIPRIEEALEAFNINRYKIEGYEADDVLGSLAKKL 120 Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181 K+ V I++ DKDL QLV L + EK + V+ G+ PEK+ Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGTLKTSDDVVNYLGVVPEKIPD 180 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236 L L GD D IPG+ IG K A + +Y +LE I N +K +N++ Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALSIFSQYDSLEKIYENIDNLKSIDGIGPSLIKNLINE 240 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 + A +SR+L + T++ IT+ E + + +L S K LEF I ++ Sbjct: 241 KDIAFMSRELAKIFTNLDITVE-EDGLQYGMDRRKLYSLCKVLEFKMFIKKLG 292 >gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33] gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33] Length = 912 Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 193/507 (38%), Positives = 304/507 (59%), Gaps = 8/507 (1%) Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528 I Y+ L GI + M+++Y L S ++ D ++ + K+ K+ I Sbjct: 411 ISYNFKSLLNLGIKFKSMYMDMMIAYHLISSQTKIDPIIPITEYSTLEPKD-FKTAFGKI 469 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 ++ I+ ++ + S IL ++ L L E L + + P+I V+S ME GI Sbjct: 470 NVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDLYKILMENEMPLIPVLSLMERKGI 529 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +ID K S E+ K LL +E+ IY+ +GE+FN++SPKQLGD+LF KL PSG KTKTG Sbjct: 530 EIDVQYFKNYSLELDKELLRIEKAIYEEAGEEFNINSPKQLGDVLFVKLNLPSGKKTKTG 589 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T LE + I + +L++R+L+K+K+TY D+LP +++ + R+HT ++ T Sbjct: 590 -YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTTFNQIGT 647 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP+KTD G KIR F++ K L+S DYSQ+ELR+L ++K L Sbjct: 648 ATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLI 707 Query: 769 QVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + ++ D+H + A IF + + E VS + R AK INFSIIYG +PF LA +L+IP + Sbjct: 708 EAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKD 767 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A++YIK+YF ++P + + + F ++GYV+T+FGR+ + I+S +I++ ER A Sbjct: 768 ASEYIKKYFEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMA 827 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +N IQG+AA++ ++ M+ V+ L+D K +LLQ+HDEL+FEV E + S+I+ Sbjct: 828 VNTVIQGTAAEVLKKVMVKVYDVLKD-KEDIALLLQVHDELIFEVEENSVEKYSEILADI 886 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ + V L +NI + NW E Sbjct: 887 MKNTVQLE---DVKLNININIGKNWAE 910 Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/293 (32%), Positives = 146/293 (49%), Gaps = 18/293 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+D S+ +YRA++A K++ P A+ GF N L ++ + + +A+ F V Sbjct: 6 LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINEFKPDYMAAAFDV---KR 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 + R EIY DYK+NR PE L+ Q+P + AF I +I+G+EADD++ + Sbjct: 61 SSLKRTEIYSDYKSNRQSTPEDLVTQIPRIEEVLDAFNINRYKIEGYEADDVLGSLAKKI 120 Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181 K+ V I++ DKDL QLV L + EK I E VI G+ PEK+ Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGILKTSEDVINYLGVVPEKIPD 180 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236 L L GD D IPG+ IG K A + +Y +LE I N +K +N++ Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYDNIDNLKNIDGIGPSLIKNLINE 240 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 + A +SR+L + TD+ I++ E + + +L S K LEF I ++ Sbjct: 241 KDIAFMSRELAKIFTDLDISVE-ESGLQYGMDREKLYSLCKILEFKMFIKKLG 292 >gi|317471923|ref|ZP_07931257.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA] gi|316900589|gb|EFV22569.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA] Length = 420 Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 175/419 (41%), Positives = 257/419 (61%), Gaps = 7/419 (1%) Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615 + KL +L +YE ++ P + + ME+ GI +D+ LK+ ++ + L E IY Sbjct: 7 FKKKLTETGMLSLYEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIGRIEELRELIYK 66 Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675 +GE+FN++SPKQLG +LF +K G KTKTG + T+ LE+I PII ILE+R Sbjct: 67 EAGEEFNINSPKQLGVVLFEHMKLEGGKKTKTG-YSTSVDVLEKIEH-LYPIISYILEYR 124 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 QL+K+KSTYAD L N+I +R+H ++ T TGR++S EPNLQNIP + +LG+ IR+ Sbjct: 125 QLTKLKSTYADGLANYIGD-DERIHGKFNQTITATGRISSTEPNLQNIPARVELGRAIRK 183 Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F+ + ADYSQIELR+LAH+++ L +E DIH A+E+FGV I++VS Sbjct: 184 VFLPEEGYTFVDADYSQIELRVLAHLSRDKNLIHAYEMEQDIHARTASEVFGVPIDQVSS 243 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 RR AK +NF I+YG+S F L+ L+I R +A +YI +YF +P + +Y+ + ++ Sbjct: 244 IQRRDAKAVNFGIVYGLSAFGLSQDLKITRKQAQEYIDKYFETYPKVKKYLNREVEKGKE 303 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 G+V T+F R E+ S RN ER A+N+PIQGSAADI + AMI V+ L+ K Sbjct: 304 EGFVTTMFQRIRPIPELKSSNFMQRNFGERVAMNSPIQGSAADIIKIAMIRVNMELKKRK 363 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L ++++LQIHDEL+ E + E+ I+ M A L VPL ++I N+W E Sbjct: 364 LKSRLILQIHDELLIEAHDSEVEEVKGILTREMMSAA----KLSVPLSIDIHTGNSWYE 418 >gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11] gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11] gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11] Length = 912 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 194/507 (38%), Positives = 304/507 (59%), Gaps = 8/507 (1%) Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528 I Y+ L GI + M+++Y L S ++ D ++ + K+ K+ I Sbjct: 411 ISYNFKSLLNLGIKFKSMYMDMMIAYHLISSQTKIDPIIPITEYSTLEPKD-FKTAFGKI 469 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 ++ I+ ++ + S IL ++ L L E L + + P+I V+S ME GI Sbjct: 470 NVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDLYKILMENEMPLIPVLSLMERKGI 529 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +ID K S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL PSG KTKTG Sbjct: 530 EIDVQYFKNYSLELDKELLRIEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKTKTG 589 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T LE + I + +L++R+L+K+K+TY D+LP +++ + R+HT ++ T Sbjct: 590 -YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTTFNQIGT 647 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP+KTD G KIR F++ K L+S DYSQ+ELR+L ++K L Sbjct: 648 ATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLI 707 Query: 769 QVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + ++ D+H + A IF + + E VS + R AK INFSIIYG +PF LA +L+IP + Sbjct: 708 EAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKD 767 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A++YIK+YF ++P + + + F ++GYV+T+FGR+ + I+S +I++ ER A Sbjct: 768 ASEYIKKYFEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMA 827 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +N IQG+AA++ ++ M+ V+ L+D K +LLQ+HDEL+FEV E + S+I+ Sbjct: 828 VNTVIQGTAAEVLKKVMVKVYDVLKD-KEDIALLLQVHDELIFEVEENSVEKYSEILADI 886 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ + V L +NI + NW E Sbjct: 887 MKNTVQLE---DVKLNININIGKNWAE 910 Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/293 (32%), Positives = 144/293 (49%), Gaps = 18/293 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+D S+ +YRA++A K++ P A+ GF N L ++ + + +A+ F V Sbjct: 6 LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINKFKPDYMAAAFDV---KR 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 + R EIY DYK+NR PE L+ Q+P + AF I +I+G+EADD++ + Sbjct: 61 SSLKRTEIYSDYKSNRQSTPEDLVTQIPRIEEVLDAFNINRYKIEGYEADDVLGSLAKKI 120 Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181 K+ V I++ DKDL QLV L + EK I E VI G+ PEK+ Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGILKTSEDVINYLGVVPEKIPD 180 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236 L L GD D IPG+ IG K A + +Y +LE I N +K + ++ Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYDNIDNLKNIDGIGPSLIKILINE 240 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 + A +SR+L + D+ I++ E + N +L S K LEF I ++ Sbjct: 241 KDIAFMSRELAKIFIDLDISVE-ESGLQYGMNREKLYSLCKILEFKMFIKKLG 292 >gi|257452007|ref|ZP_05617306.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] gi|317058556|ref|ZP_07923041.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] gi|313684232|gb|EFS21067.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] Length = 882 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 198/514 (38%), Positives = 305/514 (59%), Gaps = 16/514 (3%) Query: 466 GHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 G YD L + G S + M+++Y L S ++ D SI Q +L K I + K Sbjct: 378 GKLYTYDLKELLKLGFSFQKPVYDMMIAYHLVSSQTKEDYTSIGQYYL----KTIAEDEK 433 Query: 526 SSIPIDKISDSQVQEHA---IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 KI + + ++ S ++ L L ++L +V + P+I V++ Sbjct: 434 IVFAKQKIETLSIDSYGNFLLKRSQILYSCLDSLEKDLKEKELENVLWETELPLIPVLAS 493 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI+ID+ ++ S E+++ L+ LE+ I+ +GE+FN++SPKQLG+ILF KL P+G Sbjct: 494 MEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEAGEEFNINSPKQLGEILFLKLNLPTG 553 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKTG + T + LE ++ I N+LE+R+L+K+K+TY D +P + K R+HT Sbjct: 554 KKTKTG-FSTDVEVLENLSSQGFQIATNLLEYRKLAKLKNTYVDPIPKMV-KFGDRIHTC 611 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 Y T+TGRL+S +PNLQNIP+KT+ G +IR+ FI+ KL+S DYSQ+ELR+LA ++ Sbjct: 612 YHQIGTVTGRLSSSDPNLQNIPVKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALS 671 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 K L + ++ D+H + A +IF + E+VS + R AK INFSIIYG +PF LA +L Sbjct: 672 KDENLVKAYQEKQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKEL 731 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I +AA+YIKRYF ++P + ++ + F Q+GYVET FGR+ D I+S ++N Sbjct: 732 GISVKDAAEYIKRYFEQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKN 791 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ER A+N +QG+AA+I ++ MI ++ L K +LLQ+HDEL+FE+ EE + Sbjct: 792 QAERMAVNTVVQGTAAEILKKVMIKIYSWLLG-KTDIYLLLQVHDELIFEIQEERVEEYV 850 Query: 942 QIIVHSMEKACLPKINL-RVPLKVNIKVSNNWQE 974 + + + M+ I L V L+VN + N W E Sbjct: 851 KTLTNFMKNT----IQLEEVELEVNTNIGNTWAE 880 Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 100/301 (33%), Positives = 152/301 (50%), Gaps = 11/301 (3%) Query: 8 FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 L+D S+ +YRA+YA + K +P A+ GF L++LL+ E +A+ F + + Sbjct: 5 LLLDVSAMMYRAYYANMNMRTKE--MPTGAVYGFLLTLFQLLKEYEPEYMAAAFDIKRSH 62 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 R E+Y +YK+NR PE LL Q+P + AFGI I+I+G+EADD++ + + Sbjct: 63 LK---RTELYAEYKSNRDSAPEDLLKQIPYIEAVLDAFGIQRIKIEGYEADDVLGSLSTK 119 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 K+G VTI++ DKD+ QL+ +Y KE E V + PEK+ L L G Sbjct: 120 LSKKGIQVTIVTGDKDISQLLDENIEIYLLGKEVLKTREDVKNYIDVYPEKIPDLFGLIG 179 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEYAETARL 242 DS D IPG+ IG K A +L +Y NLE I N ++ + K E + E E A L Sbjct: 180 DSSDCIPGVRKIGPKKAVPMLDKYENLEGIYENIDKLIEIPGVGKTLIEIMKEDKELAFL 239 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 SR L + ++ + LE L E L + LEF + R+ + + + V Sbjct: 240 SRTLAKIEKNLDFSFSLEDLYFEK-KEEALREIFQKLEFKSFLKRLEQKEEKEQIKVAEV 298 Query: 303 V 303 + Sbjct: 299 I 299 >gi|332077340|gb|EGI87801.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41301] Length = 877 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 204/515 (39%), Positives = 299/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYLQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R YVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00] gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00] gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04] gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00] gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00] gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04] gi|332205064|gb|EGJ19127.1| DNA polymerase I family protein [Streptococcus pneumoniae GA47368] Length = 877 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 204/515 (39%), Positives = 299/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYLQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R YVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 111/285 (38%), Positives = 153/285 (53%), Gaps = 11/285 (3%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSRKHD--GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DGSS +RAF+A L R + GL NAI GF ML LL+ SH V Sbjct: 6 LLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSHILV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDII T Sbjct: 62 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P + Sbjct: 122 LDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPAQF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ E Sbjct: 182 IDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDKEQ 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 242 AFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|167771297|ref|ZP_02443350.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM 17241] gi|167666548|gb|EDS10678.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM 17241] Length = 874 Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 174/410 (42%), Positives = 247/410 (60%), Gaps = 10/410 (2%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 EKLL+ ++ P+ V++ ME G +D L+ E+ + I + +G FN Sbjct: 471 EKLLY---EIEMPLARVLAGMECEGFALDTQALRDYGGELDDRIDETHAAIVEYAGYDFN 527 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 L+SPKQLGD+LF KL P+ KTKTG + T LE + +PII ILE+R+LSK+KS Sbjct: 528 LNSPKQLGDVLFVKLGLPAKKKTKTG-YSTNVDVLEALRP-QHPIIGEILEYRKLSKLKS 585 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D L + RV + + T TGR++S EPNLQNIPI+T+ G ++RR F + P Sbjct: 586 TYVDGLLKVVGP-DGRVRSTFQQTETRTGRISSTEPNLQNIPIRTEEGSRMRRFFTARPG 644 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 KL+ ADYSQIELR+LA +A + F++ DIH AA++FG+ V+P MR AK Sbjct: 645 WKLVDADYSQIELRVLADLADDQNMIAAFQSGEDIHATTAAQVFGMPGGTVTPLMRSRAK 704 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF I+YGI F L+ + + SEA YIK Y + G+ +Y+E T F R+NGYV+T+ Sbjct: 705 AVNFGIVYGIGAFSLSQDIGVTVSEADSYIKSYLAHYAGVRKYMEDTIAFARENGYVKTL 764 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 FGRR + E+ + + ER A N PIQG+AADI + AM+ V + L L +++L Sbjct: 765 FGRRRYLPELAASNKVTQAFGERVARNTPIQGTAADIIKIAMVRVFERLRREGLRARLIL 824 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 Q+HDEL+ E P++EI A I+ ME A I L+VPL+ + V +NW Sbjct: 825 QVHDELLVEAPDDEIDRARAILKEEMEHA----IALKVPLEADTNVGDNW 870 Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 89/264 (33%), Positives = 138/264 (52%), Gaps = 28/264 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L VDG+S + RA+Y L+ K+ G N I GF ++L ++L + +++A V FD Sbjct: 9 LLAVDGNSILNRAYYGIKALTTKN-GEFTNGIYGFLSILLRVLDEAEPDAVA----VAFD 63 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+++Y YKA R +P L QL ++ A G + +G+EADDI+ T Sbjct: 64 LRAPTFRHKLYDGYKAQRKGMPHELASQLEPLKELLGALGFQIVTCEGYEADDILGTLAR 123 Query: 127 IAEKEGFAVTIISTDKDLMQLVS--------------PTTCLYDTVKEEKIDIEHVIKKW 172 + + G+ I + D+D +QLV P + LYD V +K+ Sbjct: 124 SSAETGWDCVIATGDRDSLQLVGPHVSVRLATTKMGQPASTLYDETA--------VREKY 175 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-RE 231 G+ P ++V ++AL GD+ DNIPG+ GIG KTA L+ +Y +++ I ++ K R+ Sbjct: 176 GVEPAQLVDVKALMGDASDNIPGVAGIGEKTALSLIGQYHDIDAIYAQLDTLEIKPGVRK 235 Query: 232 NILEYAETARLSRKLVMLRTDVPI 255 + E E A SRKL + D PI Sbjct: 236 KLGEGKEMAYTSRKLGEICCDAPI 259 >gi|331003770|ref|ZP_08327264.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412153|gb|EGG91548.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon 107 str. F0167] Length = 880 Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 184/494 (37%), Positives = 310/494 (62%), Gaps = 11/494 (2%) Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540 + F DI + +Y+++ + S+ + IA ++ ++ E++ K + + + +D + Sbjct: 393 KNFYDISVAAYLINPLKDSYFVEDIAGDYMGSACSSKSEMIGKAKLN-EVLRFNDEKAIN 451 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 + S V + + KL L +Y+ ++ P+I +++ME TG+++D++ LK+ + Sbjct: 452 YFAMESYVAVHSGENILKKLSELGLDDLYKNIEMPLIYSLAKMENTGVRVDEERLKKYAN 511 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 + + + LEE+I +GE FN++SPKQLG+ILF KLK G KTKTG + T A LE++ Sbjct: 512 TLLEKIDKLEESIISKAGESFNINSPKQLGEILFGKLKLSGGKKTKTG-YSTAADVLEKL 570 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 ++ II++ILE+RQL+K+ STYA L +I + R+H ++ T TGR++S EPNL Sbjct: 571 AL-EHEIIRDILEYRQLTKLNSTYATGLAGYI-REDGRIHGTFNQTITATGRISSTEPNL 628 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIP++T++G KIR F+ P + ADYSQIELR+LA ++ L + + ++ DIH Sbjct: 629 QNIPVRTEMGSKIRDIFVPKPGYVFVDADYSQIELRVLASLSGDEKLIESYHSAADIHAA 688 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A+++F V +E+V+P++RR+AK +NF ++YGIS F L+ L I R EA DYI YF + Sbjct: 689 TASQVFHVPLEEVTPELRRNAKAVNFGVVYGISAFGLSEDLSISRKEALDYINNYFKIYG 748 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 G+ ++++K ++ G+V+T+FGR EI S R+ +R A+N+PIQGSAADI Sbjct: 749 GVKKFLDKQVADAKEKGFVKTMFGRIRPIPEIKSSNFMTRSFGDRVAMNSPIQGSAADIM 808 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 + +M+ V ++L++ ++LQIHDEL+ EV EEE S+++ +M++A ++L+V Sbjct: 809 KISMLKVDEALKESGYDANIVLQIHDELLIEVKEEEAEKVSKLVEKTMKEA----VSLKV 864 Query: 961 PLKVNIKVSNNWQE 974 PL+V+ + W E Sbjct: 865 PLEVDAHIGKTWLE 878 Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 107/320 (33%), Positives = 176/320 (55%), Gaps = 31/320 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG S + RAFY P LS G+ NA+ GF N+++K+L E A + AV FD Sbjct: 4 LVLIDGHSILNRAFYGVPELSNSQ-GVHTNAVYGFLNIMFKVLD----EEAADYIAVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y +YK R +P+ L Q+PL++ + IP + +G+EADDII T Sbjct: 59 LSAPTFRHKAYAEYKGTRKSMPDELREQVPLIKEVLSSMNIPILTKEGYEADDIIGTIAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP------------TTCLYDTVKEEKIDIEHVIKKWGI 174 + + V+++S D+DL+QL T ++D + E+ V+ ++G+ Sbjct: 119 RYQSDEVFVSVLSGDRDLLQLSDTHIKIRIPKTSKGVTTVHDYLPED------VMNEYGV 172 Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 P++ + ++AL GD+ DN+PG+P IG KTA ++QEY ++EN + + ++K + + + Sbjct: 173 TPKEFIDVKALMGDTSDNVPGVPSIGEKTATKIIQEYHSIENAIEHVDKLKPPRASKALA 232 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR---VATT 291 E+ E A+ S+ LV + TD PI + +++ + + ++ LEF + R V TT Sbjct: 233 EHIEDAKFSKMLVTIVTDAPIETEISDMVVGNLYTKESLEWINKLEFKSFLKRYENVETT 292 Query: 292 YDCDAANIEPVVLDINTTEN 311 +NIE INT EN Sbjct: 293 -----SNIEIETDIINTGEN 307 >gi|149006807|ref|ZP_01830493.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74] gi|307126259|ref|YP_003878290.1| DNA polymerase I [Streptococcus pneumoniae 670-6B] gi|147761722|gb|EDK68686.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74] gi|306483321|gb|ADM90190.1| DNA polymerase I [Streptococcus pneumoniae 670-6B] gi|332076490|gb|EGI86952.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17545] Length = 877 Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 204/515 (39%), Positives = 299/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R YVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1] gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1] Length = 912 Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 194/507 (38%), Positives = 304/507 (59%), Gaps = 8/507 (1%) Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528 I Y+ L GI + M+++Y L S ++ D ++ + K+ K+ I Sbjct: 411 ISYNFKSLLNLGIKFKSMYMDMMIAYHLISSQTKIDPIIPITEYSTLEPKD-FKTAFGKI 469 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 ++ I+ ++ + S IL ++ L L E L + + P+I V+S ME GI Sbjct: 470 NVELITAQDFSKYLSDISIGILAIFNELNYLLKKEDLYKILMENEMPLIPVLSLMERKGI 529 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +ID K S E+ K LL +E+ IY+ +GE+FN++SPKQLGDILF KL PSG KTKTG Sbjct: 530 EIDVQYFKNYSLELDKELLRIEKAIYEEAGEEFNINSPKQLGDILFVKLNLPSGKKTKTG 589 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + T LE + I + +L++R+L+K+K+TY D+LP +++ + R+HT ++ T Sbjct: 590 -YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENS-RIHTTFNQIGT 647 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 TGRL+S +PNLQNIP+KTD G KIR F++ K L+S DYSQ+ELR+L ++K L Sbjct: 648 ATGRLSSSDPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLI 707 Query: 769 QVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + ++ D+H + A IF + + E VS + R AK INFSIIYG +PF LA +L+IP + Sbjct: 708 EAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKD 767 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A++YIK+YF ++P + + + F ++GYV+T+FGR+ + I+S +I++ ER A Sbjct: 768 ASEYIKKYFEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMA 827 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +N IQG+AA++ ++ M+ V+ L+D K +LLQ+HDEL+FEV E + S+I+ Sbjct: 828 VNTVIQGTAAEVLKKVMVKVYDVLKD-KEDIALLLQVHDELIFEVEESSVEKYSRILADI 886 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M+ + V L +NI + NW E Sbjct: 887 MKNTVQLE---DVKLNININIGKNWAE 910 Score = 137 bits (345), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 96/293 (32%), Positives = 146/293 (49%), Gaps = 18/293 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+D S+ +YRA++A K++ P A+ GF N L ++ + + +A+ F V Sbjct: 6 LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSIINEFKPDYMAAAFDV---KR 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 + R EIY DYK+NR PE L+ Q+P + AF I +I+G+EADD++ + Sbjct: 61 SSLKRTEIYSDYKSNRQSTPEDLVTQIPRIEEVLDAFNINRYKIEGYEADDVLGSLAKKI 120 Query: 129 EKEGFAVTIISTDKDLMQLVSP---TTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181 K+ V I++ DKDL QLV L + EK I E VI G+ PEK+ Sbjct: 121 AKQDIEVIIVTGDKDLSQLVEKNITVALLGKGTEGEKFGILKTSEDVINYLGVVPEKIPD 180 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236 L L GD D IPG+ IG K A + +Y +LE I N +K +N++ Sbjct: 181 LFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYDNIDNLKNIDGIGPSLIKNLINE 240 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 E A +SR+L + TD+ I++ E + + +L S K LEF I ++ Sbjct: 241 KEIAFMSRELAKIFTDLDISVE-ESGLQYGMDREKLYSLCKILEFKMFIKKLG 292 >gi|77413947|ref|ZP_00790121.1| DNA polymerase I [Streptococcus agalactiae 515] gi|77159983|gb|EAO71120.1| DNA polymerase I [Streptococcus agalactiae 515] Length = 880 Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 207/558 (37%), Positives = 316/558 (56%), Gaps = 34/558 (6%) Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 +TI+ V Q++ K L+K I +Y + K K++L+R+ I + Sbjct: 347 DTIYATSDVSLLQEALFKKALSKPIKTY---------------DFKRSKVLLNRFNIDLP 391 Query: 485 --GFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQV 538 F D L Y+L S + +++IA+ + L K K +IP ++ Sbjct: 392 EPAF-DTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP----EKTRF 445 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 EH + V++ + +L + + +++P+ +V+++MEI GI++ ++ L ++ Sbjct: 446 LEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEM 505 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 + E K + +L + IY+L+G++FN++SPKQLG +LF L P KT +TA D+ Sbjct: 506 AIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVL 565 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 + +P++ ILE+RQ++K++STY L ++I ++HT Y T TGRL+S +P Sbjct: 566 ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDP 624 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 NLQNIP++ + G+ IR+AF+ S L+S+DYSQIELR+LAHI+K L F+ DI Sbjct: 625 NLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADI 684 Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 H A +FG+ E V+P RR+AK +NF I+YGIS F L+ L IPR A YI YF Sbjct: 685 HTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYF 744 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+PGI Y+E + GYVET+F RR +INS +IR ER AIN+PIQGSA Sbjct: 745 ERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSA 804 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + AMI++ + L +KMLLQ+HDE+V EVP EEI +++ +ME A I Sbjct: 805 ADILKIAMINLDRVLYKGGYKSKMLLQVHDEIVLEVPNEEIGAIKELVTKTMESA----I 860 Query: 957 NLRVPLKVNIKVSNNWQE 974 +L VPL + W E Sbjct: 861 SLSVPLIADENAGETWYE 878 Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 115/287 (40%), Positives = 156/287 (54%), Gaps = 20/287 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M +N L L+DGSS +RAF+A L + + + GL NAI GF ML +L + Sbjct: 1 MTNKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 SH V FD TFR E+Y DYK R K P+ Q P +R GI E++ + Sbjct: 57 --PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHY 114 Query: 116 EADDIIATYTYIAE--KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T AE KE F +T++S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLAKQAEASKEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P + + L+AL GD DNIPG+ IG KT LL EYG+LE I N +KQ K Sbjct: 175 EKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276 +EN++ E A LS+ L + PITI LE ++ +GP+ I L Sbjct: 235 KENLINDKEQAFLSKTLATINIASPITIGLEDIL---YSGPQDIKAL 278 >gi|315650935|ref|ZP_07903975.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986] gi|315486781|gb|EFU77123.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986] Length = 880 Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 190/494 (38%), Positives = 307/494 (62%), Gaps = 11/494 (2%) Query: 484 RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQE 540 + F D+ + +Y+++ + S+ + IA+ ++ ++ E++ K S + K +D + ++ Sbjct: 393 KNFYDLSVAAYLINPLKDSYFVEDIARDYMGSGVSSKAEMIGKSKLS-EVLKFNDEKAEK 451 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 + S V L L KL +L +YE ++ P+I +++ME TG+++D+ LK + Sbjct: 452 YFASESYVALFASDYLLKKLNELELTRLYENVELPLIYSLARMENTGVRVDEKRLKDYAD 511 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 + + + LE +I D +GE FN++SPKQLG+ILF KLK G KTKTG + T A LE++ Sbjct: 512 TLLEKISKLEASIIDKAGESFNINSPKQLGEILFGKLKLSGGKKTKTG-YSTAADVLEKL 570 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 ++ II++ILE+RQL+K+ STYA L +I + R+H ++ T TGR++S +PNL Sbjct: 571 -APEHEIIRDILEYRQLTKLNSTYATGLAGYI-RDDGRIHGSFNQTITATGRISSTDPNL 628 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIP++T++G KIR F+ P + ADYSQIELR+LA ++ L + + + DIH Sbjct: 629 QNIPVRTEMGSKIRDIFVPKPGYVFVDADYSQIELRVLASMSGDEKLIESYHTAADIHAA 688 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 AA++F V ++KV+P++RR+AK +NF ++YGIS F L+ L I R EA DYI YF + Sbjct: 689 TAAQVFHVPLDKVTPELRRNAKAVNFGVVYGISAFGLSEDLSISRKEALDYINNYFKIYE 748 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 G+ +++K ++ GYV+T+FGR EI S R+ +R A+N+PIQGSAADI Sbjct: 749 GVKRFLDKQVADAKEKGYVKTMFGRIRPIPEIKSSNFMTRSFGDRVAMNSPIQGSAADIM 808 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 + AMI V ++L ++LQIHDEL+ EV ++E+ +I+ SM +A ++L+V Sbjct: 809 KIAMIRVDEALNKSGFDANIVLQIHDELLVEVRKDEVYKVKEIVERSMREA----VSLKV 864 Query: 961 PLKVNIKVSNNWQE 974 PL+V+ + W E Sbjct: 865 PLEVDAHIGKTWLE 878 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 120/347 (34%), Positives = 185/347 (53%), Gaps = 29/347 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG S + RAFY P LS GL NAI GF N+++K+L E A + AV FD Sbjct: 4 LVLIDGHSILNRAFYGVPELSNSQ-GLHTNAIYGFLNIMFKILD----EEAADYIAVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y +YK R +P+ L Q+P+++ + IP + +G+EADDII T Sbjct: 59 LSAPTFRHKAYAEYKGTRKSMPDELREQVPIIKDVLSSMNIPILTKEGYEADDIIGTVAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 + E V+IIS D+DL+QL P T T + + E VI ++G+ P + Sbjct: 119 KYQSEDVFVSIISGDRDLLQLSDKHIKIRIPKTSKGVTTTHDYLP-EDVISEYGVTPHEF 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DN+PG+P IG KTA ++QEY ++EN + + + +K ++ + + E + Sbjct: 178 IDVKALMGDTSDNVPGVPSIGEKTATKIIQEYHSIENAIEHVNELKPQRASKALSENIKE 237 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR-----VATTYDC 294 A+ S+ LV + TD PI L + + + + ++ LEF + R A + Sbjct: 238 AKFSKMLVTIVTDAPIETELSDMKVGNLYTKESLEWINKLEFKSFLKRYENVETAASIKL 297 Query: 295 DAANIEPVVLDINTTENK-------GIAIETEIDRDTTIKTSQFSSL 334 D +NI + D NT K GIAI + +T IK+ SSL Sbjct: 298 DISNITDLN-DWNTLYEKLKSANEFGIAICFD---ETAIKSYTVSSL 340 >gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131] gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131] Length = 880 Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 194/515 (37%), Positives = 305/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521 ++ K K++L GI + D L +Y+L S +++++IA+ + + +E Sbjct: 374 YDFKRSKVLLSHLGIEVVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + + EH V+L + KL + L +Y+ ++ P+ +V++ Sbjct: 433 KGTKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI++++ L+ ++ + + +L + IYD++G++FN++SPKQLG ILF K++ P Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL++RQ++K++STY L ++I ++HT Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI-LADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F DIH A +FG++ V+ RR+AK +NF I+YGIS F L+ Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF R+PGI Y+E + GYVET+F RR +INS ++ Sbjct: 728 NLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ K+L+ K LLQ+HDE+V EVP +E+T Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKCLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A ++L VPL V+ +W E Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 167/304 (54%), Gaps = 23/304 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K P+ Q P +R A GI E++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286 +EN++ + A LS+ L + T PITI L+ ++ NGP + S F ++F +L Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291 Query: 287 RVAT 290 +A+ Sbjct: 292 GLAS 295 >gi|153765|gb|AAA26954.1| DNA polymerase I [Streptococcus pneumoniae] Length = 877 Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 204/515 (39%), Positives = 299/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R E AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAEATAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|221195745|ref|ZP_03568799.1| DNA polymerase I [Atopobium rimae ATCC 49626] gi|221184511|gb|EEE16904.1| DNA polymerase I [Atopobium rimae ATCC 49626] Length = 903 Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 181/489 (37%), Positives = 281/489 (57%), Gaps = 23/489 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ + +Y+L+S RSS I S+ + + + S+ DKI + + + Sbjct: 434 DVGVAAYLLESDRSSFTIPSLVEFYFGV---------ELSVGSDKIPAAAYE------AV 478 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 L L KL +K L ++E ++ ++ V++ ME G+ +D L + S E+ ++ Sbjct: 479 AARALKATLTKKLEDDKSLELFETIEMGLLPVLAAMERRGLFVDPAKLAEQSKELGADIA 538 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDN 665 S E I++ +GE FNL SP QL +LF L P+ KT++G + T A+ L + Sbjct: 539 SRVERIHEAAGETFNLDSPSQLSHVLFDVLGLPTFGLKKTRSGFYSTNAKVLSDL-ADTY 597 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 I+ ++LE+R+ +KIKSTY D+LP I + R+HT ++ TGRL+S +PNLQNIP Sbjct: 598 QIVADVLEYRERAKIKSTYLDALPALI-RGDHRIHTTFNQTVAATGRLSSSDPNLQNIPT 656 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 +++LG ++R AF P ++ DYSQIELR+LAH++ L F++ D H A+ Sbjct: 657 RSELGHRVRTAFTVPSGHVFLACDYSQIELRLLAHLSGDEHLIAAFQSGADFHAATASRT 716 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 FGV +E+V+P++R AK +NF I+YG + LAT L+IPR+EA D I RYF +PG+ Y Sbjct: 717 FGVPVEEVTPELRSRAKAVNFGIVYGQQAYGLATSLKIPRAEAQDMIDRYFAAYPGVRAY 776 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 ++++ + GY T++GR+ H E + ER A+N P+QGSAADI + AMI Sbjct: 777 LDESVRIAHEKGYAVTMYGRKRHIREFGQHNRQLIAFGERTAMNHPMQGSAADIIKIAMI 836 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 V K L A K++LQIHDEL EVP +EI S+++ +ME+ + L+VPL + Sbjct: 837 RVEKRLRKEGCAAKLILQIHDELDLEVPNDEIEAVSRLVKETMEEV----VELKVPLIAD 892 Query: 966 IKVSNNWQE 974 + NW E Sbjct: 893 VSYGPNWAE 901 Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 152/292 (52%), Gaps = 10/292 (3%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 +K + ++DG+S ++RAF+A DG P A+ GF NM K++++ R + Sbjct: 13 KKRKTIAVIDGNSLMHRAFHAIRQPMSAPDGTPTGALFGFFNMFIKMIESFRPNGVI--- 69 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 FD R ++ P YKA RP + + L Q P+V+ IP E++G+E DDI+ Sbjct: 70 -CAFDKGKPQVRIDMLPQYKAQRPPMDDALHVQFPIVKTLLGVLDIPVCELEGWEGDDIL 128 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKIDIEHVIKKW--GIPP 176 T E+ G+ + + + D+D+ QL + + T V + I ++ GI P Sbjct: 129 GTLARRGEEAGYEMLLFTGDRDMYQLSTENVKIVSTRKGVSDVSIMTPESVEDLYAGITP 188 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L GDS DNIPG+PGIG K AA L+ EYG+L+ +L +A +K K EN+ + Sbjct: 189 KLVPDFYGLKGDSSDNIPGVPGIGPKKAAQLIVEYGSLDEVLAHADEVK-GKMGENLRTH 247 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A LSRK+ +RTD PI I L + ++++ L FT + R+ Sbjct: 248 KEDALLSRKVATIRTDAPIDINLADAQFPTFDPNKVVAAFSKLGFTGMTGRL 299 >gi|169334513|ref|ZP_02861706.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM 17244] gi|169259230|gb|EDS73196.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM 17244] Length = 888 Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 184/490 (37%), Positives = 291/490 (59%), Gaps = 10/490 (2%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 DI L YVL+ + + +++K+L +E K I D+ ++ + Sbjct: 404 DIYLGGYVLNPSDERYSLEVMSKKYLDIDLEE-EKGEAVQQSFLDIEDNNKYNMQMKKAK 462 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 I L + + K+ E++ +Y+ ++ ++ V+ ME+ G ++D + L+++ + K + Sbjct: 463 SIYSLAGIFKEKIKEEEMEDLYQNIEHKLMYVLGDMELEGFKVDLNTLEELGVDFDKRVE 522 Query: 608 SLEENIYDLSGEK--FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 L NI + +GE FN++S KQLG +LF K+ P+ KTKTG + T + LE++ + Sbjct: 523 DLTRNIREAAGEDEDFNVNSTKQLGHVLFDKMGLPALKKTKTG-YSTNIEVLEKLR-DHH 580 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 PII I++ RQ+SK+ STY L + I+K T ++H+ ++ T TGR++S PNLQNIP+ Sbjct: 581 PIIPMIIDLRQISKLNSTYVKGLVSLIDKDTNKIHSTFNQTITTTGRISSSNPNLQNIPV 640 Query: 726 KTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 +T+ G+ IR+ FIS L+ ADYSQIELR+LAHI+K L F+N+ DIH A+E Sbjct: 641 RTEEGRIIRKVFISSSENNVLVDADYSQIELRVLAHISKDEKLINSFKNNEDIHTRTASE 700 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +F V I++V+ +MR AK +NF I+YGIS F LA L I R +A +YI Y ++PG+ + Sbjct: 701 VFNVPIDEVTSEMRSSAKAVNFGIVYGISDFGLAKGLSIARKDAKEYIDTYLSKYPGVCK 760 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 Y+E ++ GYV T+F RR + +EI S ++R+ ER A+N PIQGSAADI + AM Sbjct: 761 YMEDIVVTAKEQGYVTTMFNRRRYINEIYSKNFNVRSFGERTALNTPIQGSAADIIKLAM 820 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 ++V L KL K++LQ+HDEL+ + P EE+ ++ ME +++ PLK Sbjct: 821 VNVQNELNKRKLKAKLILQVHDELIIDTPMEEVEEVKALLKDKMENV----VDMSCPLKA 876 Query: 965 NIKVSNNWQE 974 +I V W E Sbjct: 877 DISVGKTWFE 886 Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/293 (32%), Positives = 161/293 (54%), Gaps = 20/293 (6%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++D S IY+ F+ P+ S K G+ NA+ GF N++ KL+ + + ++ F Sbjct: 5 LVIIDAYSIIYKCFFGVRPMHSPK--GISTNAVYGFLNIILKLISDEK----PNYLYAAF 58 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D FR++ Y DYKA R +PE L Q+P + A I ++++ +EADDII + + Sbjct: 59 DKGHKNFRHDKYADYKAGRQSMPEELREQIPYIERLLDAANIISLKVDDYEADDIIGSVS 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDI---EHVIKKWGIPPEKMVC 181 +A+KEG +I+ D+D QLVS T LY I++ +++ +K+ + P++M+ Sbjct: 119 EVADKEGIDTVVITGDRDSFQLVSEHTKILYSKRGISDIEVINEDYLKEKYNLTPKQMID 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L+AL GD DNIPG+ G+G KTA LL++Y +L+ + + IK K +E ++ + A Sbjct: 179 LKALMGDKSDNIPGVKGVGEKTALNLLEKYSDLDGVYEHIEEIKG-KLQEKLINDKDNAF 237 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCN----GPRLISFLKALEFTKLINRVAT 290 LS+ L + ++ I + L E+CN IS L+ L+ +I ++ Sbjct: 238 LSKDLGTIEVNMDIDLDLN----EECNFNFENEEFISILRELDLKSIIKKLGV 286 >gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06] gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA] gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06] gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA] Length = 877 Score = 331 bits (849), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 204/515 (39%), Positives = 299/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYMQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFP I Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPDIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 112/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL EYG+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEYGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|317178174|dbj|BAJ55963.1| DNA polymerase I [Helicobacter pylori F16] Length = 893 Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 289/991 (29%), Positives = 464/991 (46%), Gaps = 126/991 (12%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMGAKNKPLTNVK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E+A LS++L L ++ C P LK + K ++T D + Sbjct: 237 DKESAFLSKELATLERGC-----IKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLE 291 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 + P++L EN + T D K S+ L N E P FLERL Sbjct: 292 NSPT-PLIL-----ENAPLLDNTPAS-DNAPKKSRMIVLE------NPE--PLSAFLERL 336 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +K N + ++V K+ K +A+A D Sbjct: 337 KK-----TNARIFMRLVLDKE---------------------------KKVLALAFLLED 364 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK-YDKL 474 Q + E +F S+ Q++ +IL +H IGH++K Sbjct: 365 QGYFLPLE-EALFSPFSLEFLQNAFS------QIL---------QHAQIIGHDLKPLLSF 408 Query: 475 VLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIPI 530 + +Y +S+ +D +++++ + + D E+LK ++ IP Sbjct: 409 LKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLKEEWIPH 454 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK------LLHVYERLDKPMIDVVSQME 584 +KI D + + A + + ++L L R EK LL + ++ P + V+ ME Sbjct: 455 EKIKDFKTKSKAGKLEQLDMELNALKRLCEYFEKGGLEEGLLALAREVETPFVKVLMGME 514 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 G +ID K++ E L LE I +L G FNL+SPKQL +IL+ KL+ P K Sbjct: 515 FQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKN-K 573 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 + + K+ + L++ +P I ILE+R+L+K+ +TY L + + ++HT + Sbjct: 574 SHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTFI 627 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAK 763 T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+LAH ++ Sbjct: 628 QTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQ 687 Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L F DIH + +FG E ++ + R AK+INF ++YG+ +L+ L I Sbjct: 688 DKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNI 744 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 P +EA Y + YF RFP I +Y+ + K + + T+ GR +D I+ Sbjct: 745 PLNEAKSYTEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGVNDYIKGNY 803 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Q Sbjct: 804 LREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNALELQQE 862 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I + P LRVPL+ + ++ W E Sbjct: 863 IQRILNDEVYP---LRVPLETSAFIAKRWNE 890 >gi|229823043|ref|ZP_04449112.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271] gi|229787482|gb|EEP23596.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271] Length = 880 Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 194/530 (36%), Positives = 311/530 (58%), Gaps = 20/530 (3%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 S +K+ E+ KI ++K D ++L G+++ G D+ L +Y++D + D+ S+A Sbjct: 359 SAFRKWLEDGDLPKISADLKRDSILLDHQGLTLAGVTFDVGLAAYLVDVEKIK-DLTSLA 417 Query: 510 QK---WLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK 564 + E++ K K ++P + ++ +H + +++ Q L +L Sbjct: 418 TYLDLGIQVQLDEVVYGKGVKQALP----ENERLAQHLADKVSLLDQAVAPLTQQLDDLG 473 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 + +Y+ ++ P+ V++ ME G+ +D L Q++ + L LE I L+G+ FN + Sbjct: 474 MTQLYQDMEFPLAQVLTDMEKRGVAVDVATLDQMNDLLLARLEELEAEIQTLAGQAFNPN 533 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQLG+ILF +L P KTKTG + T A LE++ +PI+ +L +RQL+K++ TY Sbjct: 534 SPKQLGEILFERLGLPVIKKTKTG-YSTAADVLEKLKDA-HPIVAALLTYRQLAKLQGTY 591 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTK 743 LP I + ++HT + T TGRL+S +PNLQNIPI+ + G+KIR+AF+ S P Sbjct: 592 LAGLPKFI-QADGKIHTRFVQTLTQTGRLSSADPNLQNIPIRMEEGRKIRQAFVPSEPGW 650 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAK 802 +L ADYSQIELR+LAHI+ + Q F DIH A +FG+ E V+ MRR AK Sbjct: 651 QLFGADYSQIELRVLAHISGDPHMKQAFLEGQDIHAATARRVFGLAEDEAVNSDMRRQAK 710 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF I+YGIS + L+ L +PR EA +I RY +PGI ++++ +++GYV T+ Sbjct: 711 AVNFGIVYGISDYGLSQNLDMPRKEAKAFIDRYLAEYPGISTFMQEIVAQAKKDGYVSTL 770 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 +GRR +I S ++R+ ER A+N PIQG+AADI + AM+++ +++ L ++LL Sbjct: 771 WGRRRALPDIYSSNFNLRSFAERTAMNTPIQGTAADIIKVAMVALDQAIRQRDLQARLLL 830 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 Q+HDEL+ E P+EEI +++ ME A ++L VPLKV +NW Sbjct: 831 QVHDELILEAPQEEIAILEELVPEVMEGA----VSLSVPLKVEAASGSNW 876 Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 151/291 (51%), Gaps = 11/291 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHD--GLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + + L+DGSS YRAF++ + R + GL NA+ F ML +L + +H Sbjct: 3 QRKILLIDGSSLAYRAFFSILDIERFKNKAGLHTNALFSFNRMLDGVLDQFKP----THV 58 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR E YP+YKA R K P QLP R+ A+GI E+ +EADDI+ Sbjct: 59 LVAFDKSGHTFRTEQYPEYKAGRQKTPGEFREQLPYFRVLLDAYGIKYYELLHYEADDIL 118 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177 T A+ + V I+S DKDL QL S +Y T K E + K+ + P+ Sbjct: 119 GTLAKAADPDD-QVMILSGDKDLTQLASDQVTVYITKKGVSELEPYTPASIWDKYQLTPQ 177 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 +++ L+ L GDS DN PGI +G KTA LL ++G +E + ++K K +ENI+ Sbjct: 178 QIIDLKGLMGDSSDNYPGIERVGEKTALKLLHQFGTVEGLYQGLDQLKPSKMKENIIRDE 237 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 ARLS+ L + D P+ I L+ +L + +L F ++F + ++ Sbjct: 238 ANARLSKSLARIVQDAPLEITLDDCLLGQRDLAQLSEFYVQMDFRSFLAQL 288 >gi|332201961|gb|EGJ16030.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41317] Length = 877 Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 204/515 (39%), Positives = 299/515 (58%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA----QKWLSYTRKEIL 521 ++ K K++L R+G+ ++ DI L Y+L S ++IA+IA Q +L Sbjct: 371 YDFKKVKVLLQRFGVDLQAPAFDIRLAKYLL-STVEDNEIATIASLYGQTYLVDDETFYG 429 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K +IP + EH V+++ +L KL L + +++P+ V++ Sbjct: 430 KGVKKAIP----EREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLA 485 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI + ++ L ++ AE + L + IY+L+GE+FN++SPKQLG +LF KL P Sbjct: 486 KMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLFEKLGLPL 545 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + I+K IL++RQ++KI+STY L + I ++HT Sbjct: 546 EYTKKTKTGYSTAVDVLERLAPIALIVKKILDYRQIAKIQSTYVIGLQDWI-LADGKIHT 604 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIP + + G+ IR+AF+ L+S+DYSQIELR+LAH Sbjct: 605 RYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAH 664 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+K L + F+ DIH A +FG+ + V+ RR+AK +NF ++YGIS F L+ Sbjct: 665 ISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSN 724 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R EA YI YF RFPGI Y+++ R GYVET+F RR +INS +I Sbjct: 725 NLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNI 784 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER AIN+PIQGSAADI + AMI + K+L TKMLLQ+HDE+V EVP+ E+ Sbjct: 785 RGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVE 844 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME+A I L VPL + W E Sbjct: 845 MKKLVKQTMEEA----IQLSVPLIADENEGATWYE 875 Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 111/288 (38%), Positives = 154/288 (53%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 6 LLLIDGSSVAFRAFFA---LYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVE----PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDI Sbjct: 59 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDI 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPP 176 I T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P Sbjct: 119 IGTLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ Sbjct: 179 AQFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLIND 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LS+ L + T PI I LE L+ + L F + F +L Sbjct: 239 KEQAFLSKTLATIDTKAPIAIGLEDLVYSGPDVENLGKFYDEMGFKQL 286 >gi|332523957|ref|ZP_08400209.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova 176] gi|332315221|gb|EGJ28206.1| DNA-directed DNA polymerase [Streptococcus porcinus str. Jelinkova 176] Length = 887 Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 204/516 (39%), Positives = 309/516 (59%), Gaps = 19/516 (3%) Query: 467 HNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQ--KWLSYTRKEIL-- 521 ++ K K++L+ GI + D L +Y+L S +++A+IA+ +S E + Sbjct: 381 YDFKRAKVLLNHLGIEIPEAAFDARLANYLL-SNVDDNELATIARLHTSISLESDEAIYG 439 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K + P + S H V+ ++ KL +Y +++ P+ +V++ Sbjct: 440 KGVKRAFPAKDLLFS----HLARKVAVLAASKPVMLEKLADNGQSDLYYKIELPLANVLA 495 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLL-SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 +MEI GI++++ L ++ AE ++N++ +L + IYDL+GE+FN++SPKQLG ILF K++ P Sbjct: 496 KMEIAGIKVNKQTLMEM-AEQNRNVIDALTQEIYDLAGEEFNINSPKQLGSILFEKMQLP 554 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 KT +TA D+ + PI+ IL++RQ++K++STY L ++I ++H Sbjct: 555 LTMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYLIGLQDYI-MEDGKIH 613 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759 T Y T TGRL+S +PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LA Sbjct: 614 TRYVQDLTQTGRLSSTDPNLQNIPIRMEQGRLIRKAFTPSSDDSVLLSSDYSQIELRVLA 673 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLA 818 HI+ L F N+ DIH A +FG+ E V+P RR+AK +NF I+YGIS F L+ Sbjct: 674 HISGDEHLIAAFNNNADIHTATAMRVFGIEKETDVTPNDRRNAKAVNFGIVYGISDFGLS 733 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 L I R +A DYI YF R+PGI Y++ + GYVET+F RR +INS + Sbjct: 734 NNLGISRKKARDYIDTYFERYPGIKAYMDSVVREAKDKGYVETLFKRRRELPDINSRNFN 793 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 +R+ ER AIN+PIQGSAADI + AMI++ K+L D KMLLQ+HDE+V EVP +E+ Sbjct: 794 VRSFAERTAINSPIQGSAADILKIAMINLDKALADRAFKAKMLLQVHDEIVLEVPNQELV 853 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 T Q++ ME A ++L VPL+ + +W E Sbjct: 854 TVRQLVKEIMEDA----VDLAVPLRADENSGQSWYE 885 Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 119/295 (40%), Positives = 162/295 (54%), Gaps = 17/295 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + R GL NAI GF ML +++ + Sbjct: 7 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFRNQSGLHTNAIYGFHLMLDHMMKRVQ-- 62 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K P+ Q P +R A G+P ++ + Sbjct: 63 --PTHILVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGVPFYDLANY 120 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ ++ Sbjct: 121 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDANTVVEISKKGVAEFEEFTPAYLK 180 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ PE+ + L+AL GD DNIPG+ IG KT LL EYG+LE I N K K Sbjct: 181 EKMGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEYGSLEGIYANIDHFKASKM 240 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 +EN++ E A LS+ L + TD PITI LE LI + N L +F + F +L Sbjct: 241 KENLINDKEQAFLSKTLATINTDAPITIGLEDLIYQGPNVDALAAFYDEMGFVQL 295 >gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903] gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903] Length = 881 Score = 331 bits (848), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 208/532 (39%), Positives = 312/532 (58%), Gaps = 25/532 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYVLDSGRSSHDIASIAQ 510 K+F E LK+ ++ K K++L I+++ F D L Y+L S ++I++IA Sbjct: 363 FKEFLEKTP-LKV-YDFKRAKVLLSHLDITLQKPAF-DSRLAKYLL-STVEDNEISTIAS 418 Query: 511 KW--LSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + ++ E++ K K +IP + + EH V+L + +L L Sbjct: 419 LYSQIALPLDEVVYGKGAKKAIP----EKTALLEHLARKVAVLLDTEEPMVEQLQAHDQL 474 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 + +++P+ V+++MEI GI++++ L+ + E L L + IY+L+GE+FN++SP Sbjct: 475 DLLYDMEQPLAAVLAKMEIAGIKVERQTLEDMQVENEVVLERLTQEIYELAGEEFNINSP 534 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KL P KT +TA D+ + PI+ ILE+RQ++KI+STY Sbjct: 535 KQLGVILFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVI 594 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-L 745 L + I + ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ L Sbjct: 595 GLQDWILE-DGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEEENSVL 653 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK---VSPQMRRHAK 802 +S+DYSQIELR+LAHI+ L F++ DIH A +F NIEK V+P RR+AK Sbjct: 654 LSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVF--NIEKPEDVTPNDRRNAK 711 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 +NF ++YGIS F L+ L I R EA YI+ YF R+PGI +Y+E+ R GYVET+ Sbjct: 712 AVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDKGYVETL 771 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 F RR +INS ++R ER AIN+PIQGSAADI + AMI + ++LE TKMLL Sbjct: 772 FKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQALERGAYKTKMLL 831 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q+HDE+V +VP +E+ +++ +ME A I L VPL+ + W E Sbjct: 832 QVHDEIVLQVPSDELAAIKELVKETMESA----IELAVPLEADENEGKTWYE 879 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/319 (36%), Positives = 164/319 (51%), Gaps = 17/319 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M+K+N L L+DGSS +RAF+A + R +GL NA+ GF ML LL+ + Sbjct: 1 MEKKNKLLLIDGSSVAFRAFFALYHQIDRFKNANGLHTNAVYGFNLMLSHLLERIQ---- 56 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR E+Y DYK R K P+ Q P +R GI E+ +EA Sbjct: 57 PTHVLVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIREQLDHLGIRHYELAQYEA 116 Query: 118 DDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKK 171 DDII T +AE F VTI+S DKDL+QL T + + K E+ ++ +K Sbjct: 117 DDIIGTLDKMAEATSVPFEVTIVSGDKDLIQLTDDNTVVEISKKGVAEFEEFTPAYLKEK 176 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 G+ PE+ + L+AL GD DNIPG+ IG KT LL EYG+L+ I + +K K +E Sbjct: 177 MGLTPEQFIDLKALMGDKSDNIPGVTKIGEKTGIKLLLEYGSLDGIYEHIDEMKASKMKE 236 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 N++ E A LS+ L + T+ PI I L+ + + L F + + F +L + Sbjct: 237 NLINDKEQAYLSKTLATIDTNAPIEIGLDDITYSGPHLENLAKFYEEMGFKQLRQAL--- 293 Query: 292 YDCDAANIEPVVLDINTTE 310 D PV +D E Sbjct: 294 -DLSGEEAAPVAIDYTEVE 311 >gi|317179646|dbj|BAJ57434.1| DNA polymerase I [Helicobacter pylori F30] Length = 893 Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 280/987 (28%), Positives = 457/987 (46%), Gaps = 118/987 (11%) Query: 3 KENHLFLVDGSSFIYRAFYA----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMGAKNKPLTNVK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDFAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E+A LS++L L ++ C P LK K ++T D + Sbjct: 237 DKESAFLSKELATLERGC-----IKEFDFSSCAFPSENPLLKIKNELKEYGFISTLRDLE 291 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 + P++LD NT A+E D K S+ L + P FLE+L Sbjct: 292 NSPT-PLILD-NTP-----ALENTPLLDNAPKKSRMIVLENTA--------PLSAFLEKL 336 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +K N + ++ K+ K +A+A D Sbjct: 337 KK-----TNARIFMRLALDKE---------------------------KKVLALAFLLQD 364 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YDK 473 Q + E +F S+ Q++ FF+ +H IGH++K Sbjct: 365 QGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHDLKPLLS 407 Query: 474 LVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIA---SIAQKWLSYTRKEILKSRKSSI 528 + +Y +S+ +D +++++ + + D + ++W+ + + + K++ Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWILHEKIKDFKTK---- 463 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 S ++ E N + +L + E L + ++ P + V+ ME G Sbjct: 464 -----SKAEKSEQLDRELNALKRLCEYFEKGGLEEGLFALAREVETPFMKVLMGMEFQGF 518 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +ID K++ E L LE I +L G FNL+SPKQL +IL+ KL+ P K Sbjct: 519 KIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELP-----KNK 573 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 T ++L +I +P I ILE+R+L+K+ +TY L + + ++HT + T Sbjct: 574 SHSTDEKNLLKI-LDKHPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTFIQTGT 631 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPL 767 TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+LAH ++ L Sbjct: 632 ATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDL 691 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F DIH + +FG E ++ + R AK+INF ++YG+ +L+ L IP +E Sbjct: 692 MDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLNE 748 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A Y + YF RFP I +Y+ + K + + T+ GR +D I+ R Sbjct: 749 AKSYTEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDYIKGNYLREG 807 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Q I Sbjct: 808 VNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNALELQQEIQRI 866 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 + P LRVPL+ + ++ W E Sbjct: 867 LNDEVYP---LRVPLETSAFIAKRWNE 890 >gi|317487766|ref|ZP_07946360.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA] gi|316913137|gb|EFV34652.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA] Length = 875 Score = 330 bits (847), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 188/499 (37%), Positives = 286/499 (57%), Gaps = 32/499 (6%) Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540 +SMR F D+ L YVL+S S + ++ + +P + ++ Sbjct: 402 MSMRAF-DLGLAGYVLNSSVSEYSYDALLDAYCG-----------GVLP-------EAKD 442 Query: 541 HAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 A + +L++P L ++ Y +D P++ V++ +E TG +D D L + Sbjct: 443 EAGSAAAQAAAARMLVKPLTDALGRDESKRAYFDIDLPLVAVLAIVERTGAAVDCDRLAE 502 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 + A L L I +++GE+FNL SPKQLG ILF L + K + G + T A L Sbjct: 503 LGATTQAELDELRARIIEIAGEEFNLDSPKQLGHILFEVLGLRTLKKNQRG-YSTDAAVL 561 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 ++++ D+ + +L +R+L+KIKSTY D+LP + RVHT ++ T TGRL+S E Sbjct: 562 KELS-NDHEMPALVLRYRELAKIKSTYIDALP-RMRADDGRVHTCFNETVTTTGRLSSSE 619 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSL 775 PNLQNIP++T+ G++IR F+ P K K +SADYSQIELR+LAH++ L F + Sbjct: 620 PNLQNIPVRTEFGRQIRECFV-PLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGA 678 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D H A+ +FG+ +E VSP++R AK +NF I+YG F L+ L IP EA + I+RY Sbjct: 679 DFHAATASRVFGLPVEDVSPELRSRAKAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERY 738 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +PG+ Y+++T ++ GY ET+FGR+ H E+ + ++ R ER A+N P+QGS Sbjct: 739 FEAYPGVRAYLDRTIAEAKEKGYAETMFGRKRHIPELKAANATQRGFGERTAMNHPMQGS 798 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM V + + + K+LLQ+HDEL F VPE EI S I+ ME Sbjct: 799 AADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVKDVMEHI---- 854 Query: 956 INLRVPLKVNIKVSNNWQE 974 ++LRVPL V++ ++NW E Sbjct: 855 VDLRVPLDVDVSYADNWAE 873 Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 15/287 (5%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI--FD 66 ++DG+S ++RA++A P DG P NA+ GF ML K + IAS A+I FD Sbjct: 7 VIDGNSLMHRAYHAVPQTMNAPDGRPTNAVFGFIAMLLKFID------IASPDALICAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR E YK+ RP + + L Q P++ +A +P + I+G+E DD++ T Sbjct: 61 AGRPAFRMEALEQYKSQRPPMDDDLKVQFPIIEELLEAMNVPVVRIKGWEGDDVLGTIAA 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181 E+ G+ +++ DKD QL + T + T K+ D+ V++++G+ P++ + Sbjct: 121 RDEELGYETLLVTGDKDAYQLATDMTRIV-TTKKGITDVAIYGPAEVLERYGVRPDQFID 179 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L GDS DNIPG+PGIG KTAA LLQ YG+LE I + +K K+ +E I++ + A Sbjct: 180 FLGLKGDSSDNIPGVPGIGDKTAAKLLQTYGSLEGIYEHVDDLKGKQ-KEKIVDNKDMAF 238 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 LSR + + D+ + LE + ++ K ++F + RV Sbjct: 239 LSRDVATIVRDLDFPLDLEACSFPSFDSEKVTEAFKGVQFNAHLGRV 285 >gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1] gi|291074450|gb|EFE11814.1| DNA polymerase I [Clostridium sp. M62/1] Length = 986 Score = 330 bits (846), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 173/421 (41%), Positives = 263/421 (62%), Gaps = 16/421 (3%) Query: 563 EKLLHVYERLDK---------PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613 E+L+ E LD P+I + ME GI + ++ L ++ + LE+ I Sbjct: 571 ERLMKKLEELDMKELFYTIEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEI 630 Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673 Y +GE FN++SPKQLG+ILF K++ P G KTKTG + T A LE++ + P+++ IL+ Sbjct: 631 YGETGEHFNINSPKQLGEILFGKMELPYGKKTKTG-YSTAADVLEKL-APEYPVVQKILD 688 Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733 +RQL+K+KSTYAD L +I + R+H ++ T TGRL+S EPNLQNIP++ +LG++I Sbjct: 689 YRQLTKLKSTYADGLAGYI-REDGRIHGTFNQTITATGRLSSTEPNLQNIPVRMELGREI 747 Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 RR F+ + ADYSQIELR+LAH++ L + + + DIH + A+E+F V +E+V Sbjct: 748 RRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEAYRKAEDIHAITASEVFHVPLEEV 807 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 +P RR+AK +NF I+YGIS F L+ L I R EA +YI RYF +P + +++++ Sbjct: 808 TPLQRRNAKAVNFGIVYGISAFGLSEDLSITRKEALEYINRYFETYPDVKKFLDRLVEEG 867 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 ++ GYV T+F RR E++S R+ ER A+N+PIQG+AADI + AM V L Sbjct: 868 KEKGYVTTMFKRRRPVPELSSKNFMQRSFGERVAMNSPIQGTAADIIKIAMNRVDNRLRR 927 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 L +K++LQ+HDEL+ E +EE+ I+ M+ A +LRV L++++K N+W Sbjct: 928 EGLKSKIVLQVHDELLIEAKKEELKRVQTILSEEMKHAA----DLRVALEIDMKTGNSWF 983 Query: 974 E 974 E Sbjct: 984 E 984 Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 166/297 (55%), Gaps = 17/297 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ GL NA+ GF N++++++++ + A AV FD Sbjct: 4 VVLIDGHSILNRAFYGVPELTNSR-GLHTNAVYGFLNIMFRVIEDEK----ADCLAVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y YK R +PE L Q+P+++ A GIP + + G+EADD++ T Sbjct: 59 LKEPTFRHKMYEAYKGTRKPMPEELREQVPVIKEVLSAMGIPILSVPGYEADDVLGTIAG 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 EG V+I+S D+DL+QL P T T ++ + V +++ + P++ Sbjct: 119 RCAAEGAEVSIVSGDRDLLQLADEHVKIRMPRTNRGGTEIKDFYPAD-VKEQYQVTPKEF 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DNIPG+P IG KTA L+ YG++EN + IK + ++ + E+ + Sbjct: 178 IDVKALMGDASDNIPGVPSIGEKTATALITTYGSIENAYAHLDEIKPPRAQKALREHYDM 237 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A++S++L + TD P+ +E + + P+ + LEF L+ R +D +A Sbjct: 238 AQMSKELATICTDCPVEFSMEEAKIGELYTPQAYELMSQLEFKSLLLR----FDANA 290 >gi|303232052|ref|ZP_07318755.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6] gi|302513158|gb|EFL55197.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6] Length = 884 Score = 330 bits (846), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 187/486 (38%), Positives = 283/486 (58%), Gaps = 23/486 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ LM+Y+LD R+++ + +++ S+P I+ V + Sbjct: 417 DVSLMAYLLDPTRTNYGYLYLTERF--------------SVP--SIATGSVDVECVSMVK 460 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 +L + L E L +Y ++ P+I + ME GI ID L++ + + L Sbjct: 461 ALLAMDDAAVKALQDESLWDLYNNIELPLIHTLLVMEKNGIYIDPVKLEETTIKFKAELE 520 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 ++++ IY+L+GE FN++SPKQLG ILF K+ P KTKTG + T A+ L+ + ++PI Sbjct: 521 AVQQEIYELAGETFNINSPKQLGIILFEKMNLPVIKKTKTG-YSTDAEVLDMLRH-ESPI 578 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 ++ IL +R ++K+ STY + L IN T R+HT ++ T TGRL+S +PNLQNIP++T Sbjct: 579 VEKILAYRSVAKLVSTYCEGLAVLINPETHRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 638 Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 + G++IR F L+SADYSQIELRILAH++ L + F + DIHR AAE+ Sbjct: 639 EKGREIRALFYPGEGFDTLVSADYSQIELRILAHLSGDEALIKAFNDGKDIHRFTAAEVL 698 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 G + ++V+ + R HAK +NF IIYGIS F L+ L I R EA +YI+ YF R+P + EY+ Sbjct: 699 GKSQDEVTSEERSHAKAVNFGIIYGISDFGLSRDLGITRQEAKNYIELYFSRYPKVKEYM 758 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 + + G V T+FGR +INS + R+ ER A+N PIQG+AADI + AM Sbjct: 759 DNMVTEAHETGKVRTMFGRMRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNK 818 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 V LE+ +++LLQ+HDELV EV EE+ ++ +ME + L VPL V++ Sbjct: 819 VESILEEKTFKSRLLLQVHDELVLEVVNEELDAIQTLLKETMESI----VELHVPLIVDV 874 Query: 967 KVSNNW 972 + NW Sbjct: 875 HNAENW 880 Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 111/298 (37%), Positives = 177/298 (59%), Gaps = 10/298 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DGSS ++RAF+A P L + G P NA+ GF ML KL + + + IA V FD Sbjct: 14 LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYEEIKPDYIA----VAFD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR E+Y +YK NRP PE L PQ L++ +A GI IE +G+E DDI+ + + Sbjct: 69 KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGYEGDDILGSLSK 128 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AV II+ D+D +QLV+ + ++ T K ++ ++++ + +G P+K++ + Sbjct: 129 KFGSSDLAVQIITGDRDNLQLVTDYSHVFLTKKGISDMLEVTLDNMTELYGYGPDKVIEM 188 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +AL GDS DNIPG+PG+G KTA L+ EYG+LE++ N I KK +E ++E E A L Sbjct: 189 KALMGDSSDNIPGVPGVGEKTALKLINEYGDLESVYENIDNISGKKLKERLVENKELAFL 248 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 SR+L ++TD+ ++ L+ + ++ + + + L FTKL R+A+ + + E Sbjct: 249 SRQLATIKTDMDLSYTLDQFV-QNFHLGEVKPMFETLGFTKLTPRLASVMGSEGGDAE 305 >gi|241889843|ref|ZP_04777141.1| DNA polymerase I [Gemella haemolysans ATCC 10379] gi|241863465|gb|EER67849.1| DNA polymerase I [Gemella haemolysans ATCC 10379] Length = 879 Score = 330 bits (846), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 202/546 (36%), Positives = 318/546 (58%), Gaps = 35/546 (6%) Query: 447 KEILSYL---KKFFENEHFL--------KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSY 494 KE +Y+ ++FF NE + K ++ K + R G+ + G D+ ++SY Sbjct: 345 KEGTAYIFSEEQFFTNEFVVDYLQSEISKTVYDFKKILFIAKRNGVDINGEVFDVKIVSY 404 Query: 495 VLDSGRSSHDIASIAQKWLS---YTRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVIL 550 +LD + +I I +L + +EI K K ++P ++ + + E A I Sbjct: 405 LLDVNAKT-EIDKIVFNYLGKIMSSDEEIYGKGAKRTLPAQEVINPYIAEIA----ESIA 459 Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610 + L+ KL E + +Y+ ++ + V++ ME GI + + L+++SAE + + +LE Sbjct: 460 LIKPLMEEKLAEENMTDLYKDIEIKVAKVLANMEYEGIHVSKKALEEMSAEFDERIKTLE 519 Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670 +IY L+G +FN++SPKQLG +LF L P KTKTG + T + LEQ+ + II Sbjct: 520 ASIYTLAGSEFNIASPKQLGVVLFEDLGLPPIKKTKTG-YSTAVEVLEQLQHS-HEIIPL 577 Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730 I+E+R ++K+ STYA L I R ++HT Y TGRL+S+ PNLQNIP + + G Sbjct: 578 IMEYRTITKLNSTYAKGLVKDIT-REGKIHTRYEQTLAQTGRLSSVNPNLQNIPTRIEEG 636 Query: 731 QKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789 +KIR+AF+ ++I S DYSQIELR+LAHIA+ + F++ +DIH A+++ GV+ Sbjct: 637 KKIRKAFVPASDDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTASDVNGVS 696 Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849 +++V+ MRR AK +NF I+YGIS F L+ L I R A ++I +Y F G+ +Y+ Sbjct: 697 LDEVTSSMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIDKYLETFKGVDKYMTDI 756 Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 +F R++GYVET+F RR +IN+ + N+N R A+N+PIQG+AADI + AM++V + Sbjct: 757 VDFAREHGYVETLFNRRRALPDINAKNKIVANLNARIAMNSPIQGTAADIIKIAMVNVFE 816 Query: 910 SLEDHKLATKMLLQIHDELVFEVP---EEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 LE + K+LLQ+HDEL+F+V EEE T ++ ME+A NL V LK Sbjct: 817 YLEKTNVDAKLLLQVHDELIFDVNKDIEEEFTKE---MIKIMEEAA----NLDVQLKAEA 869 Query: 967 KVSNNW 972 +W Sbjct: 870 SSGASW 875 Score = 191 bits (485), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 120/298 (40%), Positives = 165/298 (55%), Gaps = 13/298 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + + L+DG+S YRAFYA P L K GL N++ GF ML K+L ++ + V Sbjct: 2 DKIILIDGNSLSYRAFYAMPALKNKK-GLYTNSVYGFTLMLEKILADTN----PKYALVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR++ Y YK R K P L+ Q VR ++GI E +EADDII +Y Sbjct: 57 FDKGKQTFRHQSYEAYKGTRDKTPSELVEQFGYVRELLDSYGIKYEEHFDYEADDIIGSY 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPPEKM 179 IAEKEG V I++ DKDL QL S +Y T K DI E + +K+G+ P ++ Sbjct: 117 AKIAEKEGLEVIIVTGDKDLTQLASENITIYYT-KRGVTDIDYYTPEFIAEKYGLTPGQI 175 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 V ++ L GD DNIPGI G+G KTA LL EY +EN+L N I KK +E + E E Sbjct: 176 VDMKGLMGDKSDNIPGIAGVGEKTAIKLLTEYKTVENVLENIDNISGKKLKERLTEGRED 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLIL-EDCNGPR-LISFLKALEFTKLINRVATTYDCD 295 A LS+KL + T+VP+ LE L E+ R L L+ + F K +++ +T + D Sbjct: 236 ALLSKKLATIYTEVPVDNKLEDLTYSENVELKRELFEKLEFVSFLKKLSQETSTEEVD 293 >gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328] gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328] Length = 875 Score = 330 bits (846), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 181/529 (34%), Positives = 313/529 (59%), Gaps = 12/529 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIA 506 E++ K+ FE++ K+ +IK L RYGI + ++D++++ Y+LD ++S+ + Sbjct: 351 ELVESFKEEFESKDINKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLLDPSKTSYSME 410 Query: 507 SIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 K + Y K +I KS I + + ++ + ++ +L+ + ++ E Sbjct: 411 RSDPKVIGYDFKPLEDITGKGKSKKTILESDEKEIDNYVVKYMMFTNKLYEKI-SEIEEE 469 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 ++H+Y ++ P+I V+ ME TG+ + ++ L ++ + S+E+++ +L G+K N+ Sbjct: 470 DMMHLYRDVEIPLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEKSVEELIGKKINI 529 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 +S KQL ++LF L+ P K KTG +T Q++ + G + II IL +R ++K+K+T Sbjct: 530 NSSKQLAEVLFEDLELPVIKKNKTGP--STDQEVLEALSGRHEIIDYILRYRTITKLKTT 587 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y D + + I K+ ++HT + TGR++S PNLQNIPI+T+ G+ IR+AF+ Sbjct: 588 YIDGMVDLI-KKDGKIHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSEGN 646 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 L+ ADYSQIELR+LA +A + F++ DIHR A+E+F V+ +KV+ R +AK Sbjct: 647 MLLDADYSQIELRVLADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKA 706 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGI + L+ L I R EA +YI+ Y + GI +Y+E ++ GYVETI Sbjct: 707 VNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIM 766 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + E+ S ++R+ ER A+N PIQGSAADI + AM+ + L + KL K++LQ Sbjct: 767 NRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQ 826 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+ + P++E +I+ M A ++L+V +K+++ ++NW Sbjct: 827 VHDELIVDCPKDEREKVLEIMKDVMTHA----VDLKVDMKIDVNSADNW 871 Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 166/288 (57%), Gaps = 12/288 (4%) Query: 8 FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 ++DGSS ++R FYA L+ K DG+ N + GF NM + ++ + + V FD Sbjct: 6 LIIDGSSLLFRGFYAIRDLTTK-DGIHTNGVFGFMNMYYSVMGKINPDLVV----VCFDR 60 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 TFR+E Y +YK NR + PE L+ Q +++ +A G+ I+++G+EADDI T Sbjct: 61 KEPTFRHEKYSEYKGNRQETPEELIGQFDMLKELLKAMGVSYIDLKGYEADDIAGTLAKQ 120 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCLQ 183 A + + V +++ DKD +QL+ T + T + E KI D++ + +++GI P++M+ L+ Sbjct: 121 ASSKDYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIYDVDVLKEEYGITPKQMIDLK 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 L GD DNIPGI G+G KTA +Q+YG++E + + I KK ++ +++ + A LS Sbjct: 181 GLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDGEDIAYLS 240 Query: 244 RKLVMLRTDVP---ITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 R+L + TDVP + +E +++ + LI L LEF I ++ Sbjct: 241 RELGTINTDVPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFIKKL 288 >gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10] Length = 986 Score = 330 bits (846), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 168/403 (41%), Positives = 258/403 (64%), Gaps = 7/403 (1%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+I + ME GI + ++ L ++ + LE+ IY +GE FN++SPKQLG+ Sbjct: 589 IEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIYGETGEHFNINSPKQLGE 648 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF K++ P G KTKTG + T A LE++ + P+++ IL++RQL+K+KSTYAD L + Sbjct: 649 ILFGKMELPYGKKTKTG-YSTAADVLEKL-APEYPVVQKILDYRQLTKLKSTYADGLAGY 706 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 I + R+H ++ T TGRL+S EPNLQNIP++ +LG++IRR F+ + ADYS Sbjct: 707 I-REDGRIHGTFNQTITATGRLSSTEPNLQNIPVRMELGREIRRVFVPEEGSVFVDADYS 765 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELR+LAH++ L + + + DIH + A+E+F V +E+V+P RR+AK +NF I+YG Sbjct: 766 QIELRVLAHMSGDERLIEAYRKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVYG 825 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 IS F L+ L I R EA +YI RYF +P + +++++ ++ GYV T+F RR E Sbjct: 826 ISAFGLSEDLSITRKEALEYINRYFETYPDVKKFLDRLVEEGKEKGYVTTMFKRRRPVPE 885 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 ++S R+ ER A+N+PIQG+AADI + AM V L L +K++LQ+HDEL+ E Sbjct: 886 LSSKNFMQRSFGERVAMNSPIQGTAADIIKIAMNRVDNRLRREGLKSKIVLQVHDELLIE 945 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EE+ I+ M+ A +LRV L++++K N+W E Sbjct: 946 AKKEELKRVQTILSEEMKHAA----DLRVALEIDMKTGNSWFE 984 Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 97/297 (32%), Positives = 166/297 (55%), Gaps = 17/297 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ GL NA+ GF N++++++++ + A AV FD Sbjct: 4 VVLIDGHSILNRAFYGVPELTNSR-GLHTNAVYGFLNIMFRVIEDEK----ADCLAVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y YK R +PE L Q+P+++ A GIP + + G+EADD++ T Sbjct: 59 LKEPTFRHKMYEAYKGTRKPMPEELREQVPVIKEVLSAMGIPILSVPGYEADDVLGTIAG 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 EG V+I+S D+DL+QL P T T ++ + V +++ + P++ Sbjct: 119 RCAAEGAEVSIVSGDRDLLQLADEHVKIRMPRTNRGGTEIKDFYPAD-VKEQYQVTPKEF 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DNIPG+P IG KTA L+ YG++EN + IK + ++ + E+ + Sbjct: 178 IDVKALMGDASDNIPGVPSIGEKTATALITTYGSIENAYAHLDEIKPPRAQKALREHYDM 237 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A++S++L + TD P+ +E + + P+ + LEF L+ R +D +A Sbjct: 238 AQMSKELATICTDCPVEFSMEEAKIGELYTPQAYELMSQLEFKSLLLR----FDANA 290 >gi|291563492|emb|CBL42308.1| DNA polymerase I [butyrate-producing bacterium SS3/4] Length = 877 Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 167/419 (39%), Positives = 266/419 (63%), Gaps = 7/419 (1%) Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615 L +L E + +Y ++ P+I + ME GI + ++ L ++ K + LE+ I++ Sbjct: 464 LSERLAAEGMEDLYRNIELPLIYTLFHMEDEGIAVRREELTAYGGKLKKQIAVLEKEIWE 523 Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675 ++G++FN++SPKQLG+ILF K++ G KTKTG + T A LE++ D P+I+ IL++R Sbjct: 524 MTGQEFNINSPKQLGEILFEKMQIKGGKKTKTG-YSTAADVLEKL-APDYPVIQKILDYR 581 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 Q +K+ STYAD L +I K R+H+ ++ T TGR++S EPNLQNIPI+ +LG++IR+ Sbjct: 582 QYTKLNSTYADGLGTYI-KEDGRIHSRFNQTITATGRISSTEPNLQNIPIRMELGREIRK 640 Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F+ + ADYSQIELR+LAH++ L + ++ + DIH + A+++F + + +V+P Sbjct: 641 VFVPRNGFLFLDADYSQIELRVLAHMSGDERLIEAYKTAQDIHAITASQVFHIPLNEVTP 700 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 RR+AK +NF I+YGIS F L+ L I R EA +YI+RYF +P + +++ ++ Sbjct: 701 LQRRNAKAVNFGIVYGISAFGLSEDLSISRKEAMEYIERYFETYPQVKSFLDSLVAHAKE 760 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GYV T+FGRR E+ S R+ ER A+N+PIQG+AADI + AMI V + L Sbjct: 761 QGYVTTMFGRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIRVDERLRREN 820 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L ++++LQ+HDEL+ E E+E T +I+ M A +L+V L++++ NW E Sbjct: 821 LRSRLILQVHDELLIETAEDEKETVMKILSEEMHHAA----SLKVELEIDMHGGKNWFE 875 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 108/289 (37%), Positives = 163/289 (56%), Gaps = 11/289 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG S + RAFY P L+ +GL NA+ GF N+L+K+L + A + AV FD Sbjct: 4 LVLIDGHSILNRAFYGVPNLTNS-EGLHTNAVYGFLNILFKVLDEEK----ADYLAVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++++ YK R +PE L Q+PL++ A G+P + +G+EADDI+ T Sbjct: 59 LKAPTFRHKMFDAYKGTRKPMPEELHEQVPLMKEVLTAMGVPILTKEGYEADDILGTIAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP--TTCL----YDTVKEEKIDIEHVIKKWGIPPEKMV 180 +K+G+ VTI+S D+DL+QL CL T + E VI+++ + PE+ + Sbjct: 119 REQKDGYEVTILSGDRDLLQLSDTHIRICLPKTSRGTTEVHNYYPEDVIREYQVTPEQFI 178 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++AL GD DNIPG+P IG KTA L+ +Y NLENI + +K + ++ + E+ + A Sbjct: 179 EVKALMGDQSDNIPGVPSIGEKTATNLIVQYQNLENIYTHLDEVKPPRAKKALEEHRDLA 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 LS KL + D PI + LE+ P ++K LEF + R Sbjct: 239 ELSLKLARICVDAPIEFSMADAKLENLYTPEAYEYMKRLEFKSIAARFG 287 >gi|325831762|ref|ZP_08164951.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1] gi|325486431|gb|EGC88881.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1] Length = 875 Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 187/499 (37%), Positives = 286/499 (57%), Gaps = 32/499 (6%) Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540 +SMR F D+ L YVL+S S + ++ + +P + ++ Sbjct: 402 MSMRAF-DLGLAGYVLNSSVSEYSYDALLDAYCG-----------GVLP-------EAKD 442 Query: 541 HAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 A + +L++P L ++ Y +D P++ V++ +E TG +D D L + Sbjct: 443 EAGSAAAQAAAARMLVKPLTDALGRDESKRAYFDIDLPLVAVLAIVERTGAAVDCDRLAE 502 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 + A L L I +++GE+FNL SPKQLG ILF L + K + G + T A L Sbjct: 503 LGATTQAELDELRARIIEIAGEEFNLDSPKQLGHILFEVLGLRTLKKNQRG-YSTDAAVL 561 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 ++++ D+ + +L +R+L+KIKSTY D+LP + RVHT ++ T TGRL+S E Sbjct: 562 KELS-NDHEMPALVLRYRELAKIKSTYIDALP-RMRADDGRVHTCFNETVTTTGRLSSSE 619 Query: 718 PNLQNIPIKTDLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSL 775 PNLQNIP++T+ G++IR F+ P K K +SADYSQIELR+LAH++ L F + Sbjct: 620 PNLQNIPVRTEFGRQIRECFV-PLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGA 678 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D H A+ +FG+ +E V+P++R AK +NF I+YG F L+ L IP EA + I+RY Sbjct: 679 DFHAATASRVFGLPVEDVTPELRSRAKAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERY 738 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F +PG+ Y+++T ++ GY ET+FGR+ H E+ + ++ R ER A+N P+QGS Sbjct: 739 FEAYPGVRAYLDRTIAEAKEKGYAETMFGRKRHIPELKAANATQRGFGERTAMNHPMQGS 798 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AM V + + + K+LLQ+HDEL F VPE EI S I+ ME Sbjct: 799 AADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVKDVMEHI---- 854 Query: 956 INLRVPLKVNIKVSNNWQE 974 ++LRVPL V++ ++NW E Sbjct: 855 VDLRVPLDVDVSYADNWAE 873 Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 15/287 (5%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI--FD 66 ++DG+S ++RA++A P DG P NA+ GF ML K + IAS A+I FD Sbjct: 7 VIDGNSLMHRAYHAVPQTMNAPDGRPTNAVFGFIAMLLKFID------IASPDALICAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR E YK+ RP + + L Q P++ +A +P + I+G+E DD++ T Sbjct: 61 AGRPAFRMEALEQYKSQRPPMDDDLKVQFPIIEELLEAMNVPVVRIKGWEGDDVLGTIAA 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181 E+ G+ +++ DKD QL + T + T K+ D+ V++++G+ P++ + Sbjct: 121 RDEELGYETLLVTGDKDAYQLATDMTRIV-TTKKGITDVAIYGPAEVLERYGVRPDQFID 179 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L GDS DNIPG+PGIG KTAA LLQ YG+LE I + +K K+ +E I++ + A Sbjct: 180 FLGLKGDSSDNIPGVPGIGDKTAAKLLQTYGSLEGIYEHVDDLKGKQ-KEKIVDNKDMAF 238 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 LSR + + D+ + LE + ++ K ++F + RV Sbjct: 239 LSRDVATIVRDLDFPLDLEACSFPSFDSEKVTEAFKGVQFNAHLGRV 285 >gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394] gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394] Length = 880 Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 194/515 (37%), Positives = 304/515 (59%), Gaps = 17/515 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE----IL 521 ++ K K++L GI + D L +Y+L S +++++IA+ + + +E Sbjct: 374 YDFKRSKVLLSHLGIELVAPSYDARLANYLL-STVEDNELSTIARIFTDISLEEDDTVYG 432 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K K ++P + + EH V+L + KL + L +Y+ ++ P+ +V++ Sbjct: 433 KGAKRAVPDKDV----LLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLA 488 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +MEI GI++++ L+ ++ + + +L + IYD++G++FN++SPKQLG ILF K++ P Sbjct: 489 KMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPL 548 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KT +TA D+ + PI+ IL +RQ++K++STY L ++I ++HT Sbjct: 549 EMTKKTKTGYSTAVDVLERLAPIAPIVAKILAYRQITKLQSTYVIGLQDYI-LADGKIHT 607 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y T TGRL+S++PNLQNIPI+ + G+ IR+AF S L+S+DYSQIELR+LAH Sbjct: 608 RYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAH 667 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 I+ L F DIH A +FG++ V+ RR+AK +NF I+YGIS F L+ Sbjct: 668 ISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSN 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 L I R +A YI YF R+P I Y+E + GYVET+F RR +INS ++ Sbjct: 728 NLGITRKQAKTYIDTYFERYPRIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNV 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R+ ER AIN+PIQGSAADI + AMI++ K+L+ KMLLQ+HDE+V EVP +E+T Sbjct: 788 RSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTA 847 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ +ME A ++L VPL V+ +W E Sbjct: 848 IKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 878 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 116/304 (38%), Positives = 167/304 (54%), Gaps = 23/304 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K PE Q P +R A GI E++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286 +EN++ + A LS+ L + T PITI L+ ++ NGP + S F ++F +L Sbjct: 235 KENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKK 291 Query: 287 RVAT 290 +A+ Sbjct: 292 GLAS 295 >gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] Length = 916 Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 173/414 (41%), Positives = 269/414 (64%), Gaps = 9/414 (2%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 E+L + + + P+I V+S ME GI+ID K S+E+ K L +E++IY+ +GE+FN Sbjct: 508 EELYDILIQNEMPLIPVLSLMERKGIKIDVSYFKNYSSELEKELAKIEKSIYEEAGEEFN 567 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 ++SPKQLGDILF K+ PSG KTKTG + T LE + I + +L++R+L+K+K+ Sbjct: 568 INSPKQLGDILFVKMNLPSGKKTKTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKT 626 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D+LPN ++ + R+HT ++ T TGRL+S EPNLQNIP+KTD G KIR F++ Sbjct: 627 TYVDTLPNLVDSNS-RIHTSFNQIGTATGRLSSSEPNLQNIPVKTDDGIKIREGFVAGEG 685 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHA 801 K L+S DYSQ+ELR+L ++K L + + D+H + A IF + + + V+ + R A Sbjct: 686 KVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSDDVTREQRTIA 745 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K INFSIIYG + F LA +L+IP +A++YIK+YF ++P + + ++ F ++GYV+T Sbjct: 746 KIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKT 805 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 +FGR+ + I+S +I+ ER A+N IQG+AA++ ++ M+ V+++L+D K +L Sbjct: 806 LFGRKRYISGIDSKNKTIKAQAERMAVNTVIQGTAAEVLKKVMLKVYETLKD-KDDIALL 864 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKAC-LPKINLRVPLKVNIKVSNNWQE 974 LQ+HDEL+FEV E + S+I+ M+ L +NL +NI + NW E Sbjct: 865 LQVHDELIFEVEESSVEKYSEILADIMKNTVKLEDVNLN----ININIGKNWAE 914 Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 99/313 (31%), Positives = 150/313 (47%), Gaps = 22/313 (7%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+D S+ +YRA++A K++ P A+ GF N L ++ KE + A FD Sbjct: 6 LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSII----KEFNPDYMAAAFDVK 59 Query: 69 AVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 + R EIY DYK+NR PE L+ Q+P + AF I I+ +EADD++ + Sbjct: 60 RSSLKRTEIYSDYKSNRQSTPEDLVAQIPRIEEVLDAFNINRYRIESYEADDVLGSIAKK 119 Query: 128 AEKEGFAVTIISTDKDLMQLVSPT---TCLYDTVKEEKIDI----EHVIKKWGIPPEKMV 180 K+ V I++ DKDL QLV L + EK + E V+ G+ PEK+ Sbjct: 120 IAKDDLEVIIVTGDKDLSQLVEKNITIALLGKGTEGEKFGMLRTAEDVVNYLGVVPEKIP 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-----RENILE 235 L L GD D IPG+ IG K A + +Y +LE I N +K + +N+ Sbjct: 180 DLFGLIGDKSDGIPGVTKIGEKKALAIFSKYDSLEKIYENIDDLKNIEGIGPSLIKNLTN 239 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 + A LSR+L + T++ I I E+L + +L K LEF I ++ Sbjct: 240 EKDIAFLSRELAKIFTNLDIDIEEENLKYS-MDKEKLYELCKILEFKMFIKKLNLEEKTQ 298 Query: 296 AANIE--PVVLDI 306 +N + PV+L + Sbjct: 299 TSNSDHKPVLLSL 311 >gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 921 Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 167/425 (39%), Positives = 260/425 (61%), Gaps = 2/425 (0%) Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 + L++ +L ++ + L +YE L+ P+ +++ ME GI ID + +++ L Sbjct: 495 LALRMVEVLEARMRQDGLAELYESLELPLTPILADMERRGIAIDAAAFESFLSDVQGRLD 554 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 +L +Y+ +G +FN+ S +QLGD+LF+ L+ PS KTK GQ T+ LE++ G +P+ Sbjct: 555 TLTAAVYEAAGREFNIRSAQQLGDVLFSTLELPSPRKTKGGQASTSQDTLEKL-AGRHPV 613 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 + ++LE+R+L K++STY D LP ++ R+HT ++ +T TGRL+S PNLQNIP++ Sbjct: 614 VDSVLEFRKLEKMRSTYLDPLPRLMDG-NGRIHTTFNQKATATGRLSSSNPNLQNIPVRG 672 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 DLG+++R FI+ P L+SADYSQ+ELR+LAH+++ L + F N DIH AA ++ Sbjct: 673 DLGKRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLEAFRNGEDIHARTAALVYD 732 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 + ++VSP RR+AKTINF +IYG+ +L L+I SEA ++I RYF R G+ E+ + Sbjct: 733 LAPDQVSPDQRRNAKTINFGLIYGMGAQKLGQDLKISTSEAKEFIARYFSRLTGLKEFYD 792 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 + ++ GYV T+ GRR +I+SP + R AIN IQGSAADI + AM++V Sbjct: 793 SVEATAKRQGYVTTLGGRRRLLPDIHSPNGQAYALARRQAINTVIQGSAADIIKLAMLAV 852 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 + + + ++LLQ+HDEL+ EVPE A + M L VPL V+ Sbjct: 853 AEDEQLREHEARLLLQVHDELLLEVPEASARAAGARVADLMSSVKPGGEPLSVPLVVDWG 912 Query: 968 VSNNW 972 V NW Sbjct: 913 VGKNW 917 Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 152/287 (52%), Gaps = 11/287 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 +FL+DGS+FIYR F+A + R DG P NA+ +L ++L+ R + +F + D Sbjct: 14 VFLMDGSAFIYRGFFANRNMQRS-DGFPTNALVVVTRVLLRILREERPQ----YFLFVKD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 FR++I+P YKANR PE L+ Q+ P+ R+ T A G+ EADD IA+ Sbjct: 69 GKGKNFRHDIFPLYKANRDATPEDLVRQMQPIERMVT-ALGMNLEVSDHCEADDCIASLA 127 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKI-DIEHVIKKWGIPPEKMVCLQ 183 +E V I+ DKDL Q + P ++D ++EK+ ++ G+ P + +Q Sbjct: 128 ARFSQE-RPVVIVGGDKDLKQCLGPNVYMWDPAFRDEKLLTAAQFTEESGLTPAQWPDVQ 186 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD+ DNIPG+PGIG KTAA + + +LE+I + + + K ++ + ++ + Sbjct: 187 ALVGDTSDNIPGVPGIGPKTAAKIFEICPSLEDIRDHFALLPPKI-QDKLRDHLDEMFTW 245 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 RKL L DV + ++ L++ N R + E L +A+ Sbjct: 246 RKLTTLSLDVCTAVEMDDLLVRPINAARCADLAEEFELHALRREMAS 292 >gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] Length = 874 Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 193/492 (39%), Positives = 290/492 (58%), Gaps = 27/492 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWL-SYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 D+ L Y+L S DIA A +L + T E L S + +A+ + Sbjct: 403 DLELADYLLHPEESRRDIARAAFAFLGTATSAEGLSS---------------EAYAVREA 447 Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 + +L ++ +L + L+ +Y ++ P++ V++ ME TG+ +D+ L++ A ++ + Sbjct: 448 LLGARLQPVMETELAAQGLMQLYRTVELPLVPVLAAMEQTGVYVDRAALERERAAATERI 507 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGD 664 +L I+ L+G +FN+SSPKQLG+ILF L SG KTKTG + T A+ LE + Sbjct: 508 NALAREIHTLAGAEFNISSPKQLGEILFEHLGLGSGKVKKTKTG-YSTNAETLEGLR-DQ 565 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 +PII N+L +R +K++STY D + I T RVHT ++ T TGRL+S +PNLQNIP Sbjct: 566 HPIIDNVLTYRMWTKLRSTYLDGIGALIRPATGRVHTSFNQTVTATGRLSSSDPNLQNIP 625 Query: 725 IKTDLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 ++T+ G+ +R A +P L+SADYSQIELRILAH++ L F + DIH A Sbjct: 626 VRTEEGRAVR-ALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFRHGQDIHARTA 684 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE+FGV ++ V+P+ RR AK +NF I+YG+S F LA L I R EA YI RYF R+ G+ Sbjct: 685 AEVFGVPLDAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREAGGYIDRYFERYHGV 744 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +++K NGYV T++GRR + S R+ ER A+N PIQG+AAD+ + Sbjct: 745 RTFLDKIVADAHTNGYVTTLYGRRRALPALASRNYMQRSFAERMAMNTPIQGTAADLIKI 804 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AM+ + +L+ + +++LLQ+HDELV EV EE T ++++ +M A L VPL Sbjct: 805 AMVRAYDALQAADVKSRILLQVHDELVMEVTAEETETVTELLRTAMSGAA----ELAVPL 860 Query: 963 KVNIKVSNNWQE 974 V++ V NW E Sbjct: 861 AVDVHVGKNWAE 872 Score = 177 bits (449), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 97/250 (38%), Positives = 141/250 (56%), Gaps = 9/250 (3%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++DGSS +RAFYA L G+ NA+ GF ML KLL KE + + FD Sbjct: 8 VIDGSSLFFRAFYALQLPPNAR-GIHTNAVHGFAMMLVKLL----KELSPTQIVIAFDRS 62 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR +YPDYK R K PE L+ Q+PL++ +A GI +E+ +EADDII T A Sbjct: 63 RTTFRTALYPDYKGTRDKTPEELIAQIPLLKELAEALGISFLELDDYEADDIIGTLAVQA 122 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCLQA 184 EG +I+ D+D +QL+ P + T K + D +++G PP +++ ++ Sbjct: 123 AAEGVETRVITGDRDALQLIRPQLTVLLTKKGISETKAYDTAAFEEEYGFPPIRLIDMKG 182 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS DNIPG+PG+G KTA LL Y +EN+L +A+ + KK ++ +Y A LS+ Sbjct: 183 LMGDSSDNIPGVPGVGPKTATKLLLAYETIENVLDHATEVSGKKLSTSLAKYRAQALLSK 242 Query: 245 KLVMLRTDVP 254 +L + VP Sbjct: 243 QLATIECHVP 252 >gi|257064003|ref|YP_003143675.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476] gi|256791656|gb|ACV22326.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476] Length = 878 Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 185/488 (37%), Positives = 277/488 (56%), Gaps = 27/488 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 DI L +Y+L+S ++A +L+ SS+P K D+ H + Sbjct: 411 DIGLAAYLLNSNTDVFAYDALADTYLA-----------SSLPETKDDDAAAAVHVLVAPR 459 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 ++ L R L + VY ++D P++ ++ ME G Q+D D L + + + Sbjct: 460 LVNAL----REALDKDGSADVYYKIDLPLVSTLTLMERVGAQLDVDALAAMGSATRGEID 515 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 SL +I++L+GE+FN+ SPKQLG ILF KL P G KT+TG + T A L+++ +PI Sbjct: 516 SLRAHIHELAGEEFNVDSPKQLGVILFDKLGLPHGKKTRTG-YSTNAATLKKLQS-IHPI 573 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 +L +R+L+K+ STY D+LP + RVHT ++ T TGRL+S +PNLQNIP++T Sbjct: 574 ADEVLRYRELAKMSSTYIDALP-RMRADDGRVHTHFNQTVTTTGRLSSSDPNLQNIPVRT 632 Query: 728 DLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 D G++IR F+ P + +SADYSQIELR+LAH++ L F + D H AA Sbjct: 633 DFGRRIRECFV--PLHEGDVFVSADYSQIELRLLAHLSGDEHLVDAFCSGADFHAATAAR 690 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +F V +++V+PQ+R AK +NF I+YG F LA L I EA D I RYF +PG+ Sbjct: 691 VFDVPVDEVTPQLRSRAKAVNFGIVYGQQAFGLAQSLDIGFKEAQDMIDRYFEAYPGVRS 750 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 Y++KT +Q GY T+FGR+ H E+ + R ER A+N P+QGSAADI + AM Sbjct: 751 YLDKTVEDAKQTGYAVTMFGRKRHIPELKMRNAVQRGFGERTAMNHPMQGSAADIIKLAM 810 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 V + L + ++++LQ+HDEL VP +E+ S ++ M + L+VPL V Sbjct: 811 NEVQRRLIEDGFESQLMLQVHDELDLSVPADELERLSDMVREVMSTI----VELKVPLLV 866 Query: 965 NIKVSNNW 972 ++ NW Sbjct: 867 DVSSGPNW 874 Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 92/285 (32%), Positives = 150/285 (52%), Gaps = 11/285 (3%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++DG+S +YRA++A P DG P NA+ GF M KL + ++ +++ FD Sbjct: 7 VIDGNSLMYRAYHAVPPTMNAPDGTPTNAVFGFIAMFLKLYEMAKPDAVI----CAFDAG 62 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 FR + YKA RP + + L Q P++ +A +P + ++G+E DDI+ T Sbjct: 63 KPEFRMKALETYKAQRPPMDDELRVQFPVIESLLEAMSVPVVRLKGWEGDDILGTIAARD 122 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVCLQ 183 E+ G+ +I+ DKD QLV+ T + T K+ D+ V +++G+ PE+ Sbjct: 123 EELGYETLLITGDKDAYQLVTDLTRVV-TTKKGITDVAIYGPAEVEERYGVTPEQFPDFL 181 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 L GDS DNIPG+PGIG KTAA LLQ YG ++ I N ++K K+ EN+ + A +S Sbjct: 182 GLKGDSADNIPGVPGIGDKTAAKLLQNYGTMDGIYENLDKLKGKQ-LENLTNNRDVAFIS 240 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 R++ + DV + + LE + + A+ F + ++ Sbjct: 241 REVATIVRDVDLEVDLEAAAFPAFDAQAVTDAFHAVRFNSHLQKM 285 >gi|290969141|ref|ZP_06560666.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L] gi|290780647|gb|EFD93250.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L] Length = 857 Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 187/490 (38%), Positives = 289/490 (58%), Gaps = 29/490 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D++L +Y+LD R+S+ ++ +A ++ +P+ + + V A+ + Sbjct: 392 DVVLGAYLLDPTRTSYALSYLATRF--------------EVPLPEGAAPSVCAEALFAA- 436 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 Q+W L L +YER++ P++ +S ME G +D L+ + ++ Sbjct: 437 ---QVWEKEEAALQQFGLTDLYERIEAPLLYTLSVMETNGFTVDTARLQAMKTALTAQAA 493 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 +LE IY+ +G FN++SPKQLG +LF L P KTKTG + T A+ LE + +P Sbjct: 494 ALENEIYEAAGAAFNINSPKQLGHMLFEVLHLPVRKKTKTG-YSTDAEVLESLRDA-HPA 551 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 ++ I+ +R L K+ STY D L I T RV+T + T TGRL+S +PNLQNIPI+T Sbjct: 552 VEKIVRFRALKKLISTYLDGLEPLIVPATGRVYTSFHQTVTATGRLSSSDPNLQNIPIRT 611 Query: 728 DLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 + G+KIR F+ P K ++S DYSQIELR+LAH+++ + F+ + DIHR A+E Sbjct: 612 EQGKKIRSLFV--PGKGYDYILSGDYSQIELRLLAHLSQDPTMIDGFKKNQDIHRRTASE 669 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +F + E+V+P+ R HAK +NF IIYGIS F LA + I R++A YI+ YF R+ IH Sbjct: 670 VFHIPWEQVTPEERSHAKAVNFGIIYGISDFGLARNIGISRAQAKQYIESYFARYSTIHG 729 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 Y+E+ ++ G T+FGR +INS + R++ ER A+N PIQGSAADI + AM Sbjct: 730 YMEELVRQAKETGITRTMFGRMRTLTDINSKNFTRRSLAERMAMNTPIQGSAADIIKLAM 789 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 +V + LE +L +++L+Q+HDELV EVP +E+ ++ +ME+A + L VPL Sbjct: 790 NAVQRELEQRQLRSRLLVQVHDELVLEVPADELELVKTLLKRTMEEA----VTLSVPLIA 845 Query: 965 NIKVSNNWQE 974 ++ NW+E Sbjct: 846 DLHYGKNWEE 855 Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 108/292 (36%), Positives = 166/292 (56%), Gaps = 18/292 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF-AVIF 65 L ++DGSS +YRAFYA P L+ G NA+ GF NML KL E + H+ AV F Sbjct: 5 LVIIDGSSLLYRAFYAIPTLTDSQ-GRYTNAVYGFLNMLLKLY-----EELDPHYVAVAF 58 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+ +Y DYKA R PE L PQ L+R + GI +E +G+E DDI+ T Sbjct: 59 DKDKHTFRHTLYTDYKATRKPAPEELRPQFALIREVLECLGIHVLEKEGYEGDDILGTVA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 ++ G V +++ D+D +QL +Y T K + + E +++++G P +++ Sbjct: 119 RQSQAAGLEVAVVTGDRDALQLADRAITVYLTKKGITHMQAVTPEVMVREYGYTPAQVID 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 ++AL GD+ DNIPG+PG+G KTA L+QE+G ++ + S +K K RE + +Y E+A Sbjct: 179 MKALMGDTADNIPGVPGVGEKTALKLIQEFGGVDGVYARLSEVKGVKLREKLQQYRESAM 238 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPR---LISFLKALEFTKLINRVAT 290 LS++L + DVP+T E + + PR + + + L F +L+ R A Sbjct: 239 LSKQLAAICCDVPLTYTKETFLPQ----PREEEVRALFQQLGFRQLLTRFAA 286 >gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205] Length = 985 Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 212/638 (33%), Positives = 345/638 (54%), Gaps = 57/638 (8%) Query: 371 IVNTKDIQQWVQKLETIGSASFKIITDT----MDAFHSKPIAIAISTLDQKDDTSFKVET 426 I +++ ++ VQ+L + DT ++ F ++ + + + + D + Sbjct: 369 ITSSEALEALVQRLLGCCDRQSPVALDTETTSLNPFQAELVGLGVCWGEGLD------QL 422 Query: 427 IFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF 486 +I L H ++ S ++L L + + K N KYD+L+L R+G+ + G Sbjct: 423 AYIPLG-HQAELSDPAQLPLDQVLGALAPWLSSAAHPKTLQNAKYDRLILLRHGLPLAGV 481 Query: 487 -EDIMLMSYVLDSGRSSHDIASIAQK---WLSYTRKEIL--KSRKSSIPIDKISDSQVQE 540 D +L Y+ D+ + H + +AQ+ +L + E++ + S++P+ +Q Sbjct: 482 VMDTLLADYLRDA-NAKHGLELLAQRNFGFLPTSYSELVPKGANFSAVPM-----AQAAL 535 Query: 541 HAIENSNVILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 + + +V +L LLR +L + E L + ++++ P+ V++ ME TGI+ID D L ++ Sbjct: 536 YCGMDVHVTYRLTPLLRGQLEALGEPLTALLDQVELPLEPVLALMEATGIRIDTDYLGEL 595 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQD 656 S E+ L LE + + +G FNL+SPKQLG++LF L KTKTG W T A Sbjct: 596 SRELKATLERLESDAKEAAGTDFNLASPKQLGELLFDTLGLDRKKSRKTKTG-WSTDATV 654 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE++ +P++ +LE R LSK+KSTY D+LP + T RVHT ++ A T TGRL+S Sbjct: 655 LEKLEDA-HPVVPLVLEHRTLSKLKSTYVDALPALMEAETGRVHTDFNQAVTATGRLSSS 713 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQNIP++T+ ++IR+AF+ LISADYSQIELRILAH++ L + +++ D Sbjct: 714 NPNLQNIPVRTEFSRRIRKAFLPEAGWTLISADYSQIELRILAHLSGEEVLVKAYQSGDD 773 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 +H + A +F + ++V+ RR KTINF +IYG+ R A + + ++EA +++ +Y Sbjct: 774 VHALTARLLF--DKDEVTSDERRLGKTINFGVIYGMGVQRFARETGVSQAEAKEFLSKYK 831 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE------------ 884 R+P + ++E + GYVETI GRR + P R++ + Sbjct: 832 QRYPKVFAFLELQERLALSRGYVETILGRRRPF--AFDPSGLGRHLGKDPLEIELEVARR 889 Query: 885 --------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 RAA NAPIQGS+ADI + AM+ + + L + L ++LLQ+HDELV E E Sbjct: 890 GGMEAQQLRAAANAPIQGSSADIIKLAMVQLQQRLTESALPARLLLQVHDELVLEAAPEA 949 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + T + +ME+A + L VPL V V NW E Sbjct: 950 LETVLNLTRETMERA----VTLSVPLVVETGVGPNWME 983 Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 101/279 (36%), Positives = 141/279 (50%), Gaps = 36/279 (12%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L LVDG S +R+FYA LS K +G+P + GF L LL N + +A Sbjct: 11 LLLVDGHSLAFRSFYAFSKGGEGGLSTK-EGIPTSVTYGF---LKALLDNCK--GLAPQG 64 Query: 62 AVI-FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADD 119 VI FD TFR+E YKA+R PE L L ++ Q+ IP G+EADD Sbjct: 65 VVIAFDTAEPTFRHEADEAYKAHRDVAPEHFFQDLGNLQQILEQSLDIPLCMAPGYEADD 124 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVI 169 ++ T A +G+ V I+S D+DL QLV LY + +I + V+ Sbjct: 125 VLGTLANRAANDGWRVRILSGDRDLFQLVDDKRDIAVLYMGGGPYAKSSGPLEIRRDGVV 184 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---- 225 K G+ PE++V L+ALTGDS DNIPG+ G+G KTA LLQ YG+L+ I +++ Sbjct: 185 AKLGVTPEEVVDLKALTGDSSDNIPGVKGVGPKTAINLLQAYGDLDGIYAALEQLEAAGP 244 Query: 226 QKKRRENILEYA---------ETARLSRKLVMLRTDVPI 255 + K + L+ A E A SR L + D+P+ Sbjct: 245 KAKDPKGALKGALLGKLSTDRENAYRSRMLAEILVDIPL 283 >gi|317182675|dbj|BAJ60459.1| DNA polymerase I [Helicobacter pylori F57] Length = 893 Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 280/993 (28%), Positives = 460/993 (46%), Gaps = 130/993 (13%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMGAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E+A LS++L L ++ C P Sbjct: 237 DKESAFLSKELATLERGC-----IKEFDFSSCAFP------------------------- 266 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 +EN + I+ E+ I T L + + + S+ TP LE Sbjct: 267 -------------SENPLLKIKDELKEYGFIST--LRDLENSPTPLISDNTP---LLENT 308 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASF-KIITDTMDAFHSKPIAIAISTL 414 L P + NT+ + ++++L+ + F +++ D K +A+A Sbjct: 309 PLLDNAP-KKSRMIILENTESLSAFLERLKKTNARIFMRLVLDK----EKKVLALAFLLE 363 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YD 472 DQ + E +F S+ Q++ FF+ +H IGH++K Sbjct: 364 DQGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHDLKPLL 406 Query: 473 KLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSI 528 + +Y +S+ +D +++++ + + D E+LK ++ I Sbjct: 407 SFLKAKYQVSLEDIRIQDTQILAFLKNPEKVGFD--------------EVLKQYLKEEWI 452 Query: 529 PIDKISDSQVQEHAIE------NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 P +KI D + + A + N + +L + E LL + ++ P + V+ Sbjct: 453 PHEKIKDFKTKSKAGKLELLSVELNALKRLCEYFEKGGLEEGLLALAREVETPFMKVLMG 512 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME G +ID K++ E L LE I +L G FNL+SPKQL +IL+ KL P Sbjct: 513 MEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLGLPKN 572 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 K+ + K+ + L++ +P I ILE+R+L+K+ +TY L + + ++HT Sbjct: 573 -KSHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTT 625 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHI 761 + T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+LAH Sbjct: 626 FIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHF 685 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 ++ L F DIH + +FG E ++ + R AK+INF ++YG+ +L+ L Sbjct: 686 SQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETL 742 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 IP +EA YI+ YF RF I +Y+ + K + + T+ GR +D I+ Sbjct: 743 NIPLNEAKSYIEAYFKRFSSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDYIKG 801 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Sbjct: 802 NYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPELQ 860 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q I + P LRVPL+ + ++ W E Sbjct: 861 QEIQRILNDEVYP---LRVPLETSAFMAKRWNE 890 >gi|307249707|ref|ZP_07531687.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858273|gb|EFM90349.1| hypothetical protein appser4_5110 [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 686 Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 238/727 (32%), Positives = 372/727 (51%), Gaps = 76/727 (10%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRAF+A P L+ K +G P A+ G NML L+ SH AV Sbjct: 6 QNPLVLVDGSSYLYRAFHAFPPLTNK-NGEPTGAMYGVLNMLKSLVAQVE----PSHIAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A GIP I I+G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEQYKSHRPPMPDDLRAQVQPLHTIIKALGIPLISIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +G V I + DKD+ QLV+ L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LAVQAANDGKNVLISTGDKDMAQLVNDHIMLINTMNNTLLDREGVIEKYGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD+ DNIPG+ G+G KTA LLQ G+L+ I N ++ K + Sbjct: 181 ALQGDASDNIPGVKGVGEKTALGLLQGIGSLKEIYANLDQVATLSFRGAKTLAPKLEAEK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS L ++TDV + + E L+++ L+ EF + +N V + A Sbjct: 241 DAADLSYLLATIKTDVELEVTHEQLVVQPQKRDELVELFGRYEFKRWLNEV-----MNDA 295 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 N PV T+N I + T+ Q + +EQT K+ ++R Sbjct: 296 N--PV------TQNSAEKIPN--NYQATVSAPQ---------AVETEQTFAKVEIDR--- 333 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIS----- 412 Y + +Q W++K+ + + TD +D+ + + I+ Sbjct: 334 --------SRYETVTTMAQLQSWIEKINQVKLVAVDTETDNLDSMSANLVGISFGLANGE 385 Query: 413 ----TLDQKDDTSFKVETIFIDLSVHTSQDST------GKNTLT-KEILSYLKKFFENEH 461 L K+ + + + DL ++ T KN L L LK E+ Sbjct: 386 ACYIPLTHKEQVTLEPQQ--SDLFAEPAEVETTTSFELAKNQLNLTACLIELKPLLESAD 443 Query: 462 FLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR-- 517 KIG NIKYD + +G+ + G D ML SY L+S GR H++ +A ++L + Sbjct: 444 VKKIGQNIKYDLTIFANHGVQVEGVAFDTMLESYTLNSTGR--HNMDELADRYLGHKTIE 501 Query: 518 -KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK---LLHVYERLD 573 +EI K+ + DKI+ ++A E+++V ++L +L P+L EK L+ ++ ++ Sbjct: 502 FEEIAGKGKNQLTFDKIAIDVASQYAAEDADVTMKLHQVLAPEL--EKAPTLVKLFNEIE 559 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 P+++V+S++E G+ ID + L S EI + L LE+ ++ +GE FNL+S KQL +IL Sbjct: 560 MPLVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSELEQLVHSEAGEIFNLASTKQLQEIL 619 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 FTKL P KT G T + L+++ + + K ++E R LSK+KSTY D LP IN Sbjct: 620 FTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLLMEHRGLSKLKSTYTDKLPLMIN 679 Query: 694 KRTQRVH 700 ++T RVH Sbjct: 680 QKTGRVH 686 >gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3] gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3] Length = 875 Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 180/529 (34%), Positives = 312/529 (58%), Gaps = 12/529 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIA 506 +++ K+ FE++ K+ +IK L RYGI + ++D++++ Y+LD ++S+ + Sbjct: 351 DLVESFKEEFESKDINKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLLDPSKTSYSME 410 Query: 507 SIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 K + Y K +I KS I + + ++ + ++ +L+ + ++ E Sbjct: 411 RSDPKVIGYDFKPLEDITGKGKSKKTILESDEKEIDNYVVKYMMFTNKLYEKI-SEIEEE 469 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 ++H+Y ++ P+I V+ ME TG+ + ++ L ++ + S+E+++ +L G+K N+ Sbjct: 470 DMMHLYRDVEIPLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKINI 529 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 +S KQL ++LF L+ P K KTG +T Q++ + G + II IL +R ++K+K+T Sbjct: 530 NSSKQLAEVLFEDLELPVIKKNKTGP--STDQEVLEALSGRHEIIDYILRYRTITKLKTT 587 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y D + + I K ++HT + TGR++S PNLQNIPI+T+ G+ IR+AF+ Sbjct: 588 YIDGMVDLI-KEDGKIHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSEGN 646 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 L+ ADYSQIELR+LA +A + F++ DIHR A+E+F V+ +KV+ R +AK Sbjct: 647 MLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKA 706 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGI + L+ L I R EA +YI+ Y + GI +Y+E ++ GYVETI Sbjct: 707 VNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIM 766 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + E+ S ++R+ ER A+N PIQGSAADI + AM+ + L + KL K++LQ Sbjct: 767 NRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQ 826 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+ + P++E +I+ M A ++L+V +K+++ ++NW Sbjct: 827 VHDELIVDCPKDEREKVLEIMKDVMTHA----VDLKVDMKIDVNSADNW 871 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 166/288 (57%), Gaps = 12/288 (4%) Query: 8 FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 ++DGSS ++R FYA L+ K DG+ N + GF NM + ++ + + V FD Sbjct: 6 LIIDGSSLLFRGFYAIRDLTTK-DGIHTNGVFGFMNMYYSVMGKINPDLVV----VCFDR 60 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 TFR+E Y +YK NR + PE L+ Q +++ +A G+ I+++G+EADDI T Sbjct: 61 KEPTFRHEKYSEYKGNRQETPEELIGQFDMLKELLKAMGVSYIDLKGYEADDIAGTLAKQ 120 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCLQ 183 A + + V +++ DKD +QL+ T + T + E KI D++ + +++GI P++M+ L+ Sbjct: 121 ASSKDYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIYDVDALKEEYGITPKQMIDLK 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 L GD DNIPGI G+G KTA +Q+YG++E + + I KK ++ +++ + A LS Sbjct: 181 GLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDGEDIAYLS 240 Query: 244 RKLVMLRTDVP---ITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 R+L + TDVP + +E +++ + LI L LEF I ++ Sbjct: 241 RELGTINTDVPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFIKKL 288 >gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC BAA-613] gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC BAA-613] Length = 930 Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 175/491 (35%), Positives = 296/491 (60%), Gaps = 17/491 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS--QVQEHAIEN 545 D + Y+L+ + ++ +A+ +L T + SR + + + D+ + +++A++ Sbjct: 447 DAGVAGYLLNPLKDTYAYDDLARDYLGLT----VPSRADLLAKEDLGDALWRGEKNAVDC 502 Query: 546 SNVI-LQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 + W P +L + +Y ++ P+I + ME G+++++ LK+ Sbjct: 503 VCYMGYTAWKAAAPLAGQLKDTGMYSLYTDIEMPLIYSLFHMEQEGVKVERAELKEYGDR 562 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 + + LE+ IY +G +FN++SPKQLG+ILF +++ P G KTKTG + T A LE++ Sbjct: 563 LKVGIAKLEQEIYQETGHEFNINSPKQLGEILFEQMELPGGKKTKTG-YSTAADVLEKL- 620 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D P+++ IL++RQL+K+ STYA+ L +I + R+H ++ T TGR++S EPNLQ Sbjct: 621 APDYPVVQKILDYRQLTKLNSTYAEGLAAYIGE-DGRIHGKFNQTITATGRISSTEPNLQ 679 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP++ LG++IR+ F+ + ADYSQIELRILAH++ L + + ++ DIH + Sbjct: 680 NIPVRMALGREIRKVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAYRSAQDIHAIT 739 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A+++F V +++V+P RR+AK +NF I+YGIS F L+ L I R EA +YI +YF +PG Sbjct: 740 ASQVFHVPLDEVTPLQRRNAKAVNFGIVYGISAFGLSEGLSISRKEAVEYIDKYFETYPG 799 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + +++ ++ GYV T++GRR E+ S R ER A+N+PIQG+AAD+ + Sbjct: 800 VKTFLDGLVKQGKEQGYVTTLYGRRRPIPELKSANFMQRQFGERVAMNSPIQGTAADVMK 859 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AMI+V + L+ L ++++LQIHDEL+ E +EI +I+ M+ A +LRV Sbjct: 860 IAMIAVDRELKKRGLKSRIVLQIHDELLIETARDEIEAVKEILTDKMKHAA----DLRVS 915 Query: 962 LKVNIKVSNNW 972 L+V +V +W Sbjct: 916 LEVEAEVGKSW 926 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 105/300 (35%), Positives = 172/300 (57%), Gaps = 13/300 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG S + RAFY P L+ +GL NA+ GF N++ K+L+ + A H AV Sbjct: 2 DKLVLIDGHSIMNRAFYGVPDLTNS-EGLHTNAVYGFLNIMLKILEEEK----ADHAAVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E+Y YK R +P+ L Q+P+++ +A GIP + ++GFEADDI+ T Sbjct: 57 FDLKEPTFRHEMYDAYKGTRKPMPQELHEQVPVMKDVLKAMGIPIMTLKGFEADDILGTV 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 + +G V+++S D+DL+QL P T T ++ E V++++ + PE Sbjct: 117 AKRCQAKGIQVSVVSGDRDLLQLADEHIKIRIPRTSRGVTEIKDYFP-EDVLREYQVTPE 175 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 + + ++AL GD+ DNIPG+P IG KTA ++ +Y ++EN + I+ + ++ + E+ Sbjct: 176 EFIDVKALMGDASDNIPGVPSIGEKTATSIIAQYKSIENAYAHLEEIRPPRAKKALEEHY 235 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A++SRKL + TD P+ E +ED P ++K LEF ++ R T +AA Sbjct: 236 DMAQMSRKLAAICTDCPVEFNYEDARIEDLYTPEAYQYMKRLEFKSILARFDKTAAQEAA 295 >gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101] Length = 1020 Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 202/555 (36%), Positives = 313/555 (56%), Gaps = 42/555 (7%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIA 506 ++L+ L + + K N KYD+L+L R+G+ + G D +L Y+ D+ + H + Sbjct: 478 QVLTALAPWLGSAQHPKALQNAKYDRLILLRHGLPLEGVVMDTLLADYLRDA-NAKHGLE 536 Query: 507 SIAQK---WLSYTRKEILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL- 560 +AQ+ +L + E++ S++PI+ Q + + +V +L LLR +L Sbjct: 537 LLAQRNFGFLPTSYSELVPKGADFSAVPIE-----QAALYCGMDVHVTRRLAPLLRAQLE 591 Query: 561 -IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 + +L + +R++ P+ V++ ME TGI+ID L ++S+E+ + L LE + +G Sbjct: 592 ELGPQLPQLLDRVELPLEPVLALMEATGIRIDTAYLAELSSELGQTLQRLEADAKAAAGT 651 Query: 620 KFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677 FNL+SPKQLG++LF L KTKTG W T A LE++ +P++ +LE R L Sbjct: 652 DFNLASPKQLGELLFDTLGLDRKKSRKTKTG-WSTDAAVLEKLEDA-HPVVSLVLEHRTL 709 Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 SK+KSTY D+LP + T RVHT ++ A T TGRL+S PNLQNIPI+T+ ++IR+AF Sbjct: 710 SKLKSTYVDALPALMEPETGRVHTDFNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAF 769 Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797 + +LISADYSQIELRILAH++ L Q ++ D+H + A + + ++VS Sbjct: 770 LPEAGWQLISADYSQIELRILAHLSGEEVLVQAYQQGDDVHALTARLL--LEKDEVSADE 827 Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857 RR KTINF +IYG+ R A + + +++A +++ +Y R+P + ++E + G Sbjct: 828 RRLGKTINFGVIYGMGAQRFARETGVSQTQAKEFLSKYKQRYPKVFAFLELQERLALSRG 887 Query: 858 YVETIFGRR--IHYD-------------EIN---SPKSSIRNINERAAINAPIQGSAADI 899 YVETI GRR +D EI+ + + + RAA NAPIQGS+ADI Sbjct: 888 YVETILGRRRPFAFDPSGLGRHLGKDPLEIDLDIARRGGMEAQQLRAAANAPIQGSSADI 947 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + AM+ +H L L ++LLQ+HDELV E E + + +ME+A + L Sbjct: 948 IKLAMVQLHHQLAASGLPARLLLQVHDELVLEAAPEALEAVRTLTRETMERA----VELS 1003 Query: 960 VPLKVNIKVSNNWQE 974 VPL V V NW E Sbjct: 1004 VPLLVETGVGPNWME 1018 Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 98/278 (35%), Positives = 141/278 (50%), Gaps = 34/278 (12%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L LVDG S +R+FYA LS K +G+P + GF L LL N K + Sbjct: 13 LLLVDGHSLAFRSFYAFSKGGEGGLSTK-EGVPTSVTYGF---LKALLDNC-KGLVPQGV 67 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120 + FD TFR+E YKA+R + PE L L ++ QA IP G+EADD+ Sbjct: 68 VIAFDTAEPTFRHEADEAYKAHRDEAPEHFFQDLGNLQQILQQALDIPLCMAPGYEADDV 127 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170 + T A +G+ V I+S D+DL QLV LY + +I E VI Sbjct: 128 LGTLANRAANDGWRVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKSSGPVEIRREGVIS 187 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK----Q 226 K G+ PE++V L+ALTGDS DNIPG+ G+G KTA LLQ + +L+ + + ++ + Sbjct: 188 KLGVTPEEVVDLKALTGDSSDNIPGVKGVGPKTAINLLQAHTDLDGVYTALAELQAAGPK 247 Query: 227 KKRRENILEYA---------ETARLSRKLVMLRTDVPI 255 K + +L+ A ++A SR L + D+P+ Sbjct: 248 AKDPKGVLKGALLGKLEADRDSAYRSRMLAKILVDIPL 285 >gi|303229623|ref|ZP_07316411.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a] gi|302515748|gb|EFL57702.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a] Length = 884 Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 187/486 (38%), Positives = 283/486 (58%), Gaps = 23/486 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ LM+Y+LD R+++ + +++ S+P I+ V + Sbjct: 417 DVSLMAYLLDPTRTNYGYLYLTERF--------------SVP--SIATGSVDVECVSMVK 460 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 +L + L E L +Y ++ P+I + ME GI ID L++ + + L Sbjct: 461 ALLAMDDAAVKALQDESLWDLYNNIELPLIHTLLVMEKNGIYIDPVKLEETTIKFKAELE 520 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 ++++ IY+L+GE FN++SPKQLG ILF K+ P KTKTG + T A+ L+ + ++PI Sbjct: 521 AVQQEIYELAGETFNINSPKQLGIILFEKMNLPVIKKTKTG-YSTDAEVLDMLRH-ESPI 578 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 ++ IL +R ++K+ STY + L IN T R+HT ++ T TGRL+S +PNLQNIP++T Sbjct: 579 VEKILAYRSVAKLVSTYCEGLAVLINPETHRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 638 Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 + G++IR F L+SADYSQIELRILAH++ L + F + DIHR AAE+ Sbjct: 639 EKGREIRALFYPGEGFDTLVSADYSQIELRILAHLSGDEALIKAFNDGKDIHRFTAAEVL 698 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 G + ++V+ + R HAK +NF IIYGIS F L+ L I R EA +YI+ YF R+P + EY+ Sbjct: 699 GKSQDEVTSEERSHAKAVNFGIIYGISDFGLSRDLGITRQEAKNYIELYFSRYPKVKEYM 758 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 + + G V T+FGR +INS + R+ ER A+N PIQG+AADI + AM Sbjct: 759 DNMVIEAHETGKVRTMFGRMRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNK 818 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 V LE+ +++LLQ+HDELV EV EE+ ++ +ME + L VPL V++ Sbjct: 819 VESILEEKAFKSRLLLQVHDELVLEVVNEELDAIQTLLKETMESI----VELHVPLIVDV 874 Query: 967 KVSNNW 972 + NW Sbjct: 875 HNAENW 880 Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 111/298 (37%), Positives = 177/298 (59%), Gaps = 10/298 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DGSS ++RAF+A P L + G P NA+ GF ML KL + + + IA V FD Sbjct: 14 LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYEEIKPDYIA----VAFD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR E+Y +YK NRP PE L PQ L++ +A GI IE +G+E DDI+ + + Sbjct: 69 KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGYEGDDILGSLSK 128 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AV II+ D+D +QLV+ + ++ T K ++ ++++ + +G P+K++ + Sbjct: 129 KFGSSDLAVQIITGDRDNLQLVTDYSHVFLTKKGISDMLEVTLDNMTELYGYGPDKVIEM 188 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +AL GDS DNIPG+PG+G KTA L+ EYG+LE++ N I KK +E ++E E A L Sbjct: 189 KALMGDSSDNIPGVPGVGEKTALKLINEYGDLESVYENIDNISGKKLKERLVENKELAFL 248 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 SR+L ++TD+ ++ L+ + ++ + + + L FTKL R+A+ + + E Sbjct: 249 SRQLATIKTDMDLSYTLDQFV-QNFHLGEVKPMFETLGFTKLTPRLASVMGSEGGDAE 305 >gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4] gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4] Length = 875 Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 180/529 (34%), Positives = 313/529 (59%), Gaps = 12/529 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIA 506 +++ K+ FE++ K+ +IK L RYGI + ++D++++ Y+LD ++S+ + Sbjct: 351 DLVESFKEEFESKDINKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLLDPSKTSYSME 410 Query: 507 SIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 K + Y K +I KS I + + ++ + ++ +L+ + ++ E Sbjct: 411 RSDPKVIGYDFKPLEDITGKGKSKKTILESDEKEIDNYIVKYMMFTNKLYEKI-SEIEEE 469 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 ++H+Y ++ P+I V+ ME TG+ + ++ L ++ + S+E+++ +L G+K N+ Sbjct: 470 DMMHLYRDVEIPLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKINI 529 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 +S KQL ++LF L+ P K KTG +T Q++ + G + II IL +R ++K+K+T Sbjct: 530 NSSKQLAEVLFEDLELPVIKKNKTGP--STDQEVLEALSGRHEIIDYILRYRTITKLKTT 587 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y D + + I K+ ++HT + TGR++S PNLQNIPI+T+ G+ IR+AF+ Sbjct: 588 YIDGMVDLI-KKDGKIHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSGGN 646 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 L+ ADYSQIELR+LA +A + F++ DIHR A+E+F V+ +KV+ R +AK Sbjct: 647 VLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAKA 706 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGI + L+ L I R EA +YI+ Y + GI +Y+E ++ GYVETI Sbjct: 707 VNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIM 766 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + E+ S ++R+ ER A+N PIQGSAADI + AM+ + L + KL K++LQ Sbjct: 767 NRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQ 826 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+ + P++E +I+ M A ++L+V +K+++ ++NW Sbjct: 827 VHDELIVDCPKDEREKVLEIMKDVMTHA----VDLKVDMKIDVNSADNW 871 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 166/288 (57%), Gaps = 12/288 (4%) Query: 8 FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 ++DGSS ++R FYA L+ K DG+ N + GF NM + ++ + + V FD Sbjct: 6 LIIDGSSLLFRGFYAIRDLTTK-DGIHTNGVFGFMNMYYSVMGKINPDLVV----VCFDR 60 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 TFR+E Y +YK NR + PE L+ Q +++ +A G+ I+++G+EADDI T Sbjct: 61 KEPTFRHEKYSEYKGNRQETPEELIGQFDMLKELLKAMGVSYIDLKGYEADDIAGTLAKQ 120 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCLQ 183 A + + V +++ DKD +QL+ T + T + E KI D++ + +++GI P++M+ L+ Sbjct: 121 ASSKDYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIYDVDALKEEYGITPKQMIDLK 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 L GD DNIPGI G+G KTA +Q+YG++E + + I KK ++ +++ + A LS Sbjct: 181 GLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDGEDIAYLS 240 Query: 244 RKLVMLRTDVP---ITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 R+L + TDVP + +E +++ + LI L LEF I ++ Sbjct: 241 RELGTINTDVPEDLMGFGIEDCTIKEADNDHLIEVLTKLEFNSFIKKL 288 >gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6] gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6] Length = 874 Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 166/410 (40%), Positives = 250/410 (60%), Gaps = 2/410 (0%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L+ + + L+ P+I V++ ME G+++D + L E+ K+L + E++Y + FN+ Sbjct: 465 LVELMKTLELPLIPVLADMESAGVKLDAEALADFLEEVQKDLDRITEDVYREAQGPFNIR 524 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 S +QLGD+LF +LK P KT+ GQ T+ LE+++ G +P++ +LE+R+L K++STY Sbjct: 525 SAQQLGDVLFNRLKLPVSGKTRGGQASTSQDVLEKLS-GHHPVVDALLEFRKLEKLRSTY 583 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 + LP + R+ T ++ +T TGRL+S PNLQNIP++ LG+++R F +P KK Sbjct: 584 LEPLPRLMGG-DGRIRTTFNQLATATGRLSSSNPNLQNIPVRGALGRRMRACFTAPEGKK 642 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 LISADYSQIELR+LAH+++ L F DIH A+ +F +++P RR+AKTI Sbjct: 643 LISADYSQIELRVLAHLSRDETLLAAFREGADIHARTASLLFDAPPSEITPDQRRNAKTI 702 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF +IYG+ P +LA +L+IP SEA ++ RYF R G+ + E + R+ GYV T+ G Sbjct: 703 NFGLIYGMGPQKLAQELKIPLSEAKAFMARYFERLQGLKHFYENVEEMAREQGYVTTLAG 762 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR +I + R++ R AIN IQGSAADI + AM++VH L K+LLQ+ Sbjct: 763 RRRPLPDIQAESQQARSLARRQAINTLIQGSAADIIKLAMLAVHGDETLRTLDAKLLLQV 822 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL+ EVPE A + + M I L VPLK + + NW + Sbjct: 823 HDELLLEVPEAAAQEAGERVAALMANVRPGGIVLDVPLKADWGAAENWGD 872 Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 94/291 (32%), Positives = 150/291 (51%), Gaps = 19/291 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++L+DGS+F+YR FYA + R DG P +A+ +L ++L +E HFA + D Sbjct: 12 IYLMDGSAFVYRGFYANQSMQRS-DGFPTSALFIVARILMRIL----REEQPKHFAFVLD 66 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT- 125 FR+E++P YKA R PE L+ Q+ + +A G+ EADD +A+ Sbjct: 67 GHGPNFRHELFPLYKAQRSATPEDLIKQIDPIHRLIKALGLHLEVSDSCEADDCLASLAK 126 Query: 126 -YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEKI-DIEHVIKKWGIPPEKMVCL 182 Y E+ V +++TDKDL Q + ++D ++EKI ++ ++ G+ P + + Sbjct: 127 RYREER---PVILVATDKDLKQCLHDNVMMWDPASRDEKIVTLKSFEEETGLKPTQWPDV 183 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYAET 239 QA+ GDS DNIPG+ G+G KTA L EY +LE I + +K QKK + E Sbjct: 184 QAIIGDSSDNIPGVRGVGPKTAEKLFHEYASLEAIRDGFASMKPALQKKFDGQL----EA 239 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 L R+L L T ++ L+ + + N + L+ E + L +AT Sbjct: 240 MFLYRQLTTLDTSRCASLTLDAMRVRPVNRQEAATLLREFELSSLERELAT 290 >gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC 29176] gi|197297752|gb|EDY32310.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC 29176] Length = 871 Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 185/487 (37%), Positives = 286/487 (58%), Gaps = 22/487 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+++ +Y+L+ +S +D +A++ L +L K+ ++ A+E Sbjct: 405 DVIVAAYLLNPLKSDYDYEDVAREQLG-----LLIDEKTEESTKACYEAYTAYMAVEP-- 457 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 L K+ + ++ ++ P++ + +ME GI ++ + LK ++ ++ Sbjct: 458 --------LNRKMEETGMTKLFREIEMPLVFTLYEMEQAGIHVEGEALKAYGDQLGNRIV 509 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 LE+ IYD++GE FN++SPKQLG ILF KL+ P KTKTG + T A L+++ + PI Sbjct: 510 ELEKEIYDMAGETFNINSPKQLGVILFEKLEMPHAKKTKTG-YSTAADVLDKL-APEYPI 567 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 + ILE+RQL+K+KSTYAD L I R+H ++ T TGR++S EPNLQNIP++ Sbjct: 568 VAKILEYRQLTKLKSTYADGLATFIGP-DGRIHGKFNQTITATGRISSTEPNLQNIPVRM 626 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 +LG+ IR+ F+ + ADYSQIELRILAH + L Q + + DIHRM A+++F Sbjct: 627 ELGRLIRKVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAYREARDIHRMTASQVFH 686 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 V ++V+ RR+AK +NF I+YGIS F L+ L I R EAA YI+ YF +PGI +++ Sbjct: 687 VPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAARYIEHYFETYPGIKTFLD 746 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 + ++ GY T+FGRR E+ S R+ ER A+NAPIQG+AADI + AMI V Sbjct: 747 QCVADAKEKGYAVTLFGRRRPVPELKSSNFMQRSFGERVAMNAPIQGTAADIIKIAMIRV 806 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 ++ + ++M+LQ+HDEL+ E EEE+ +I+ ME A +L VPL ++ Sbjct: 807 SDEMKKQNMKSRMILQVHDELLIEAAEEEVDEVKKILKEEMEHAA----SLSVPLLADMH 862 Query: 968 VSNNWQE 974 NW E Sbjct: 863 TGKNWYE 869 Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 112/336 (33%), Positives = 174/336 (51%), Gaps = 40/336 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG S + RAFY P L+ +GL NA+ GF N+++K+L + E + V FD Sbjct: 5 IVLIDGHSILNRAFYGVPDLTNS-EGLHTNAVYGFLNIMFKILDEEKPE----YLTVTFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+E+Y +YK R + E L Q+P+++ +A I IE G EADD++ T ++ Sbjct: 60 VHAPTFRHEMYQEYKGTRKPMAEELRQQVPVIKEVLKAMNIEIIEQAGLEADDLLGTISH 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMV 180 EKEG V+IIS D+D +QL + K+ K +IE V +++G+ P + + Sbjct: 120 QCEKEGLDVSIISGDRDTLQLTTEHIKVRIPKTKQGKTEIEDYLAADVKERYGVTPTEFI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++AL GD+ DNIPG+PGIG KTA ++QEY +EN + +K + +N+ E+ E A Sbjct: 180 DVKALMGDTSDNIPGVPGIGEKTATKIIQEYKTIENAYEHVDELKPPRASKNLKEFWEQA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPR--------LISFLKALEFTKLINR----- 287 ++S+ L +R D D NG R + L+F L+ R Sbjct: 240 QMSKTLATIRLDAETEF--------DLNGARHGNPYTKEAHELFQKLQFKNLLGRFDVET 291 Query: 288 ----VATTYDCDA---ANIEPVVLDINTTENKGIAI 316 V T+ C+ A IE + + E G+A Sbjct: 292 SANDVEATF-CEVTGKAAIEKIFKEAEKAEKVGVAF 326 >gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122] gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122] Length = 905 Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 184/511 (36%), Positives = 286/511 (55%), Gaps = 38/511 (7%) Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540 +S R F DI L +Y+L S SS+D A++ +++L+ +S+P + + Sbjct: 418 LSARAF-DIGLSAYLLQSNASSYDYATLCEEYLA-----------ASLPAFDDACDEACA 465 Query: 541 HAIENSNVILQLWLLLRPKLIVEK--------------LLHVYERLDKPMIDVVSQMEIT 586 HA V +L L + + Y +D P++ V++ ME Sbjct: 466 HAF----VAPRLARALDGAMACDAEEASPDGTSGRSVGTRSCYYDIDLPLVPVLAVMERV 521 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G +ID D L ++ +++ + + +++L+GE+FNL SPKQL +LF KL P G KT+ Sbjct: 522 GARIDVDALAEMGRSVAEEIDGIRTRVFELAGEEFNLDSPKQLSVVLFEKLGLPHGKKTQ 581 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 G + T A+ L ++ +PI + IL +R+L+K++STY ++LP + VHT ++ Sbjct: 582 RG-YSTDAKTLSKLE-DVHPIAREILRYRELAKMESTYIEALP-RMRAGDGLVHTHFNQT 638 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYSQIELRILAHIAKIT 765 T TGRL+S +PNLQNIP++T+ G++IR F+ T L +SADYSQIELR+LAH+++ Sbjct: 639 VTTTGRLSSSDPNLQNIPVRTEFGRRIRGCFVPLRTGDLFMSADYSQIELRLLAHLSRDE 698 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F + D H AA +FGV +E+V+P MR AK +NF I+YG F LA L I Sbjct: 699 HLVHAFCSGADFHASTAARVFGVPLEEVTPSMRSRAKAVNFGIVYGQQAFGLAQNLGIGF 758 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA + I RYF +PG+ +++ T VR GY T+FGRR H E+ + + R ER Sbjct: 759 KEAQEMIDRYFEAYPGVRAFLDGTVEEVRACGYATTMFGRRRHIPELKAKNPAQRGFGER 818 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 A+N P+QGSAADI + AM V + L D A ++++Q+HDEL VP E+ ++ Sbjct: 819 TAMNHPMQGSAADIVKMAMNEVQRRLVDGGFAAQVMIQVHDELDLSVPVSELDAVGALVR 878 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 +M + L VPL V+++ + W E + Sbjct: 879 DAMTNV----VTLEVPLIVDVQSAKTWAEAH 905 Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 152/285 (53%), Gaps = 11/285 (3%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++DG+S ++RA++A P DG P NA GF +ML K +++R ++I FD Sbjct: 7 VIDGNSLMHRAYHAVPPTMNAVDGTPTNAAFGFMSMLLKFYEDARPDAIV----CAFDAG 62 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 T R E YKA RP + + L Q P++ A GIP ++++G+E DDI+ T Sbjct: 63 KPTHRIEAMKAYKAQRPPMDDELRVQFPVIEGLLDAMGIPVVKVKGWEGDDILGTIAARD 122 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPPEKMVCLQ 183 E G+ +++ DKD QLVS T + T ++ D+ + V++++G+ + Sbjct: 123 EALGWNTLLVTGDKDAYQLVSDHTRVV-TTRKGITDVVIYGPDEVLERYGVTAAQFPDFL 181 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 L GD+ DNIPG+PGIG KTA LLQ YG+++ I N ++K K+ +N+ + + A LS Sbjct: 182 GLQGDTADNIPGVPGIGPKTATKLLQAYGSMDGIYKNLDKLKGKQ-LQNLADNRDQAYLS 240 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 R L ++ D+ + LE + A++F+ + RV Sbjct: 241 RDLAVIVQDLDFELDLESAAFPSFAASAVAEAFGAVQFSSHLARV 285 >gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31] gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31] Length = 916 Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 201/538 (37%), Positives = 314/538 (58%), Gaps = 28/538 (5%) Query: 442 KNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRS 501 KNTL K I KF I +N K L G + + M+++Y L S ++ Sbjct: 400 KNTLIKFIAELDVKF--------ISYNFK----TLLNLGFTFKSMYMDMMIAYHLISSQT 447 Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV---ILQLWLLLRP 558 D+ ++ + K+ K++ I V E A S + IL ++ + Sbjct: 448 KMDVFIPITEYSNVDAKDF----KTTFGKAHIETLLVGEFAGYLSKIGLGILAIYDEINH 503 Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 L E+L + + + P+I V+S ME GI+ID K S E+ K L +E+ IY+ +G Sbjct: 504 ILHKEELYDILIQNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKIEKAIYEEAG 563 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 E+FN++SPKQLGDILF K+ PSG KTKTG + T LE + I + +L++R+L+ Sbjct: 564 EEFNINSPKQLGDILFVKMNLPSGKKTKTG-YSTDVMVLEDLESYGYNIARLLLDYRKLN 622 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 K+K+TY D+LPN ++ + R+HT ++ T TGRL+S EPNLQNIP+KTD G KIR F+ Sbjct: 623 KLKTTYVDTLPNLVDSNS-RIHTSFNQIGTATGRLSSSEPNLQNIPVKTDDGIKIREGFV 681 Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQM 797 + K L+S DYSQ+ELR+L ++K L + + D+H + A IF + + + V+ + Sbjct: 682 AGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDLHDLTARRIFNLSDSDDVTREQ 741 Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857 R AK INFSIIYG + F LA +L+IP +A++YIK+YF ++P + + ++ F ++G Sbjct: 742 RTIAKIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHG 801 Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917 YV+T+FGR+ + I+S +I+ ER A+N IQG+AA++ ++ M+ V+++L+D K Sbjct: 802 YVKTLFGRKRYISGIDSKNKTIKAQAERMAVNTVIQGTAAEVLKKVMLKVYETLKD-KDD 860 Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC-LPKINLRVPLKVNIKVSNNWQE 974 +LLQ+HDEL+FEV E + S+I+ M+ L +NL +NI + NW E Sbjct: 861 IALLLQVHDELIFEVEESSVEKYSEILADIMKNTVKLEDVNLN----ININIGKNWAE 914 Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 97/313 (30%), Positives = 150/313 (47%), Gaps = 22/313 (7%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+D S+ +YRA++A K++ P A+ GF N L ++ KE + A FD Sbjct: 6 LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFINTLLSII----KEFNPDYMAAAFDVK 59 Query: 69 AVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 + R EI+ DYK+NR PE L+ Q+P + AF I I+ +EADD++ + Sbjct: 60 RSSLKRTEIFGDYKSNRQSTPEDLVAQIPRIEEVLDAFNINRYRIESYEADDVLGSIAKK 119 Query: 128 AEKEGFAVTIISTDKDLMQLVSPT---TCLYDTVKEEKIDI----EHVIKKWGIPPEKMV 180 K+ V I++ DKDL QLV L + EK + E V+ G+ PEK+ Sbjct: 120 IAKDDLEVIIVTGDKDLSQLVEKNITIALLGKGTEGEKFGMLRTAEDVVNYLGVVPEKIP 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-----RENILE 235 L L GD D IPG+ IG K A + +Y +LE I N +K + +N+ Sbjct: 180 DLFGLIGDKSDGIPGVTKIGEKKALAIFSKYDSLEKIYENIDDLKNIEGIGPSLIKNLTN 239 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 + A LSR+L + T++ I + E+L + +L K LEF I ++ Sbjct: 240 EKDIAFLSRELAKIFTNLDINLEEENLKYS-MDKEKLYELCKTLEFKMFIKKLNLEEKTQ 298 Query: 296 AANIE--PVVLDI 306 +N + PV+L + Sbjct: 299 TSNFDHKPVLLSL 311 >gi|238019447|ref|ZP_04599873.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748] gi|237864146|gb|EEP65436.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748] Length = 873 Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 189/486 (38%), Positives = 287/486 (59%), Gaps = 23/486 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L++Y+LD R+++ + +++ S+P I+ V + Sbjct: 406 DMSLLAYLLDPTRTNYGYLYLTERF--------------SVP--SIASGSVDVECVSMVK 449 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 +L + + E+L +YE ++ P+I + ME GI ID + L + +A L Sbjct: 450 ALLAMNEVACESARREELWSLYETIELPLIHTLVVMEKNGIYIDTNKLAETTARFKDELA 509 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 +++ IYDL+GE FN++SPKQLG ILF K+ P KTKTG + T A+ L+ + ++PI Sbjct: 510 QVQQEIYDLAGETFNINSPKQLGVILFEKMNLPVIKKTKTG-YSTDAEVLDMLR-NESPI 567 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 ++ IL +R ++K+ STY + L IN +T+R+HT ++ T TGRL+S +PNLQNIP++T Sbjct: 568 VEKILAYRSVAKLVSTYLEGLAVLINDKTKRIHTTFNQMVTATGRLSSSDPNLQNIPVRT 627 Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 + G++IR F L+SADYSQIELRILAH++ L + F + DIHR AAE+ Sbjct: 628 EKGREIRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVDGKDIHRFTAAEVL 687 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 G E V+ + R HAK INF IIYGIS F L+ L I R EA +YI YF R+P + EY+ Sbjct: 688 GKAQEDVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYM 747 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 ++ + G V T+FGR+ +INS + R+ ER A+N PIQG+AADI + AM Sbjct: 748 DRMVQEAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQ 807 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 V + LE+ +++LLQ+HDELV EV EE+ +++ +M+ + L VPL V++ Sbjct: 808 VEQKLEEGNFKSRLLLQVHDELVLEVVNEELEAVEELLRSTMQSV----VELHVPLIVDV 863 Query: 967 KVSNNW 972 + NW Sbjct: 864 HHAENW 869 Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 110/295 (37%), Positives = 173/295 (58%), Gaps = 10/295 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DGSS ++RAF+A P L + G P NA+ GF ML KL + E + AV FD Sbjct: 4 LMIIDGSSLLFRAFFALPPL-KSALGTPTNAVYGFLTMLIKLYE----EINPDYIAVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR E+Y +YK NRP PE L PQ L++ +A GI IE +GFE DDI+ + + Sbjct: 59 KGRQTFRTEMYSEYKGNRPDAPEDLRPQFSLIQDVLKALGICVIEEEGFEGDDILGSLSK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 AV II+ D+D +QLV+ + ++ T K ++ ++++ + +G P+K++ + Sbjct: 119 KFGTPEMAVKIITGDRDNLQLVTEHSHVFLTKKGISDMLEVTLDNMEELYGYGPDKVIEM 178 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +AL GDS DNIPG+PG+G KTA L+ EYGNLE++ + I KK +E ++E + A L Sbjct: 179 KALMGDSSDNIPGVPGVGEKTALKLITEYGNLESVYDHIEDISGKKLKERLVENKDLAFL 238 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 SR+L ++TD+ ++ +E + ++ + + + L FTKL R+ + A Sbjct: 239 SRELATIKTDMDLSYKVEDFV-QNFHTSEVQPLFETLGFTKLTPRIVQVMGGEEA 292 >gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] Length = 885 Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 180/493 (36%), Positives = 278/493 (56%), Gaps = 29/493 (5%) Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545 F D+ L +YVLDS S +D + +A+ +L + P++ D V + A Sbjct: 416 FFDVTLAAYVLDSSVSRYDFSYLAETYL----------EGALAPVEDDDDRLVMQAAC-- 463 Query: 546 SNVILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 L L+ P L+ + VY+ +D P++ V++ ME G +D D L+ + + Sbjct: 464 ------LRALIDPMSQALVADGTKGVYDTIDLPLVPVLAHMERIGALLDTDTLQALGSRT 517 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 ++N+ + E IY+L+GEKFN+ SP+Q+ ILF + P +T G + T A+ LE ++ Sbjct: 518 AQNIADISERIYELAGEKFNIDSPQQVSHILFDVIGLPPRKRTSRG-YSTDAKVLEDLSS 576 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 ++ + ILE+R+L+KI TY D+LP + R+HT ++ T TGRL+S PNLQN Sbjct: 577 -EHQLPGLILEYRELAKIMGTYIDALPK-LRGADGRLHTSFNETVTTTGRLSSSNPNLQN 634 Query: 723 IPIKTDLGQKIRRAFIS-PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 IP++T+ G+ IR FI P +SADYSQIELR+LAH++ L F + D H Sbjct: 635 IPVRTEFGRHIRECFIPLSPEHLFVSADYSQIELRLLAHLSGDAHLIDAFRSGADFHSAT 694 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AA +FGV +E+V+P++R AK +NF I+YG F L+ LRIP EA I RYF +P Sbjct: 695 AARVFGVPVEEVTPELRSRAKAVNFGIVYGQQAFGLSQSLRIPFGEAQAMIDRYFTAYPV 754 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y++ + GY T+FGR+ H E+ + + R ER A+N P+QG+AADI + Sbjct: 755 VRAYLDNIVAQAHEKGYALTMFGRKRHIPELRAHNAQQRAFGERIAMNHPMQGTAADIIK 814 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +AM+ V L KM++Q+HDEL VP +++ S ++ ME + L VP Sbjct: 815 KAMVEVDARLRHEFPNAKMMIQVHDELDLSVPADQVGEVSALLKEVMENV----VELDVP 870 Query: 962 LKVNIKVSNNWQE 974 L V+++ + NW E Sbjct: 871 LIVDVQSAKNWAE 883 Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 150/284 (52%), Gaps = 9/284 (3%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++DG+S ++RA++A P DG P NA+ GF +M K + + +++ FD Sbjct: 7 VIDGNSLMHRAYHAVPPTMNAPDGTPTNAVFGFLSMFLKFIDIAHPDAVV----CAFDVG 62 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 R YKA RP + + L Q P+V A GIPA+++ G+E DDI+ T Sbjct: 63 KPQHRIAALEQYKAQRPPMDDDLRVQFPVVEQVLAAMGIPAVKVPGWEGDDILGTIAARG 122 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK----IDIEHVIKKWGIPPEKMVCLQA 184 + G+ +++ DKD QL S T + +T + D V +K+G+ PE++ Sbjct: 123 DAAGYDTLLVTGDKDACQLASDHTRIVNTKRGISDVVIFDPAGVEEKYGVSPEQIPDFLG 182 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS DNIPG+PGIG KTAA LLQ +G++E I + +K K++E+I + + A LSR Sbjct: 183 LMGDSSDNIPGVPGIGPKTAAKLLQRFGSIEGIYEHLDELK-GKQQESIRDNRDAAFLSR 241 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + +++ D+ + LE+L N + + + L + RV Sbjct: 242 DVAIIKCDLDFELDLENLTFPSFNEEAVTAAFEKLGMRAHLGRV 285 >gi|332674238|gb|AEE71055.1| DNA-directed DNA polymerase I [Helicobacter pylori 83] Length = 893 Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 281/992 (28%), Positives = 459/992 (46%), Gaps = 128/992 (12%) Query: 3 KENHLFLVDGSSFIYRAFYA----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y PL + K G P + G M+ K ++ + Sbjct: 7 KEETLALIDTFAYLFRSYYMGAKNKPLTNVK--GFPTGLLTGLVGMVKKFYKDKKN---M 61 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 62 PFIVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVSGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIVLFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 +A LS++L L ++ C P LK + K ++T D + Sbjct: 237 DKGSAFLSKELATLERGC-----IKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLE 291 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 + P++LD NT +E D K S+ L N+E P FLE+L Sbjct: 292 NSPT-PLILD-NTP-----LLENTPASDNAPKKSRMIVLE------NTE--PLSAFLEKL 336 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +K N + ++V K+ K +A+A D Sbjct: 337 KK-----TNARIFMRLVLDKE---------------------------KKVLALAFLYED 364 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YDK 473 Q + E +F S+ Q++ FF+ +H IGH++K Sbjct: 365 QGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHVQIIGHDLKPLLS 407 Query: 474 LVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIP 529 + +Y +S+ +D +++++ + + D E+LK ++ I Sbjct: 408 FLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLKEELIL 453 Query: 530 IDKISDSQVQEHAIENS------NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 +KI D + + A ++ N + +L + E LL + ++ P + V+ M Sbjct: 454 HEKIKDFKTKSKAEKSEQLDRELNALRRLCEYFEKGGLEEGLLALAREVETPFVKVLMDM 513 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E G +ID K++ E L LE I +L G FNL+SPKQL +IL+ KL+ P Sbjct: 514 EFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGTDFNLNSPKQLSEILYEKLELPKN- 572 Query: 644 KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 K+ + K+ + L++ +P I ILE+R+L+K+ +TY L + + ++HT + Sbjct: 573 KSHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTF 626 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIA 762 T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+LAH + Sbjct: 627 IQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFS 686 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L F DIH + +FG E ++ + R AK+INF ++YG+ +L+ L Sbjct: 687 QDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLN 743 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IP +EA Y + YF RFP I +Y+ + K + + T+ GR +D I+ Sbjct: 744 IPLNEAKSYTEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGVNDYIKGN 802 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Q Sbjct: 803 YLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNALELQQ 861 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I + P LRVPL+ + ++ W E Sbjct: 862 EIQRILNDEVYP---LRVPLETSAFIAKRWNE 890 >gi|291543473|emb|CBL16582.1| DNA polymerase I [Ruminococcus sp. 18P13] Length = 851 Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 167/417 (40%), Positives = 256/417 (61%), Gaps = 9/417 (2%) Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 KL E L + E ++ P+++V++ ME TG+ +DQD +++ +S + LEE IY L+G Sbjct: 436 KLEAEGLTRLMEEIELPLVEVLASMEHTGVLVDQDGVRRFGDALSGEIRQLEEEIYTLAG 495 Query: 619 EKFNLSSPKQLGDILFTKLKFP---SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675 ++FN++SPKQLG +LF L+ P KTKTG + T A+ LE++ G PI+ IL +R Sbjct: 496 KQFNIASPKQLGQVLFEDLEIPHPQGKKKTKTGSFSTNAEVLEKLR-GAYPIVSLILRYR 554 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 QL+K+ STY L + R+HT + T TGR++S EPN+QNIP++T+LG+++R+ Sbjct: 555 QLTKLNSTYVAGLLKTVAP-DGRIHTCFKQTETRTGRISSTEPNMQNIPVRTELGKEMRK 613 Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F++P + L+ ADYSQIELRILA++ + + Q F + DIH AA++FGV E V+P Sbjct: 614 FFVAPRGRILLDADYSQIELRILANLCEDANMQQAFLSGADIHASTAAQVFGVPREAVTP 673 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 QMR AK +NF IIYGI + L+ + + EA YIKRY FP + +++ + + Sbjct: 674 QMRSAAKAVNFGIIYGIGAYSLSQDIGVSVREADRYIKRYLENFPRVEQFMTRIVEDAER 733 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 G+V T+FGRR E+ S + R A+N PIQG+AADI + AMI V++ L + Sbjct: 734 TGFVSTLFGRRREVPELKSHNKIQQAAGRRIAMNTPIQGTAADIIKIAMIRVYRRLAREQ 793 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 L +++LQ+HDEL+ E ++ A+ I+ ME A ++ VPL + +W Sbjct: 794 LDARLILQVHDELIVEAAVQDADRAAVILREEMEHAW----DMAVPLTAEVGKGESW 846 Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 118/213 (55%), Gaps = 7/213 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L +DG+S + RAFY +L+ G+P NA+ GF N+ K + + +A V FD Sbjct: 3 LLAIDGNSILNRAFYGIRMLTSSK-GVPTNALFGFFNIYLKEAAQVQPDGVA----VAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFR++ YKANR +PE L QL V+ + G+ +E +GFEADDI+ T Sbjct: 58 LRSPTFRHKAVASYKANRKGMPEELAQQLAPVKELLRGMGVTVLEAEGFEADDILGTLAR 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI--EHVIKKWGIPPEKMVCLQA 184 I + G I++ D+D +QLV + +E I E +++G P ++ L+A Sbjct: 118 ICTEHGEDCVILTGDRDSLQLVGEHVRVDLATNKETIPYTEERFREEYGFAPVHLIDLKA 177 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217 L GDS DNI G+PGIG KTA L+Q YG +E + Sbjct: 178 LMGDSSDNIKGVPGIGPKTATGLIQTYGTIEEL 210 >gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843] gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843] Length = 956 Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 206/562 (36%), Positives = 323/562 (57%), Gaps = 41/562 (7%) Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDS 498 +G N + +L L+ ++ + K+ N K+D V + GI+++G D M+ SYVL Sbjct: 407 SGDNLNLEIVLEKLRPILASDDYPKVFQNAKFDIDVFYHQGITVKGLVFDTMVASYVLHP 466 Query: 499 GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK-ISDSQVQEHAIENSNVILQLWLLLR 557 +H++ + ++L T L + IP K I+D + A + LLR Sbjct: 467 -ELTHNLEDLCDRYL--TGITSLSYKSLGIPAGKTIADLDIPTTA-NYCGLDAYATYLLR 522 Query: 558 PKLIVE-----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612 KL E L ++ ++ P++ V+ QME GI+I+ + LK S ++ ++L +E+N Sbjct: 523 EKLQAELTKIPPLYQLFSEIESPLVMVLWQMENYGIKININYLKNFSQQLERDLAYIEKN 582 Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670 Y+ GE FNLSSPKQL +ILF +L KTKTG + T LE++ GD+P++ Sbjct: 583 AYESIGETFNLSSPKQLSEILFDRLALNRKKSRKTKTG-YSTDQSVLEKLQ-GDHPLVDY 640 Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730 ILE R LSK+KSTY D+LP +T RVHT ++ T TGRL+S PNLQNIPI+++ Sbjct: 641 ILEHRTLSKLKSTYVDALPKLAEPKTARVHTDFNQTITSTGRLSSSNPNLQNIPIRSEFS 700 Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790 ++IR+AFI L+SADYSQIELRILAH+++ L + + ++ D+H++ A +F + Sbjct: 701 RRIRQAFIPENGYLLVSADYSQIELRILAHLSQEPVLLEAYRSNQDVHKVTAQLLF--DK 758 Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850 +++P+ R KTINF +IYG+ + A + ++ + +I++Y R+ + EY+E +K Sbjct: 759 REITPEERSLGKTINFGVIYGMGAQKFARESKLTVEQGRKFIEKYHQRYAQVFEYLENSK 818 Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNI-------------NE-----RAAINAPI 892 GYVETI GRR +++ N +R + NE R+A NAPI Sbjct: 819 KQAITQGYVETILGRRRYFNFDNPLLKRLRGLSLHDIDLDSLKLNNEEAQLLRSAANAPI 878 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGS+ADI + AM+ + + L++++ ++LLQ+HDELV EVP EE + I +ME+A Sbjct: 879 QGSSADIIKVAMVKLAEVLQNYR--ARLLLQVHDELVLEVPREEWPSLESKIKTTMEEA- 935 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 ++L +PL V IK +NW E Sbjct: 936 ---VSLTIPLLVEIKAGDNWME 954 Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 108/305 (35%), Positives = 161/305 (52%), Gaps = 26/305 (8%) Query: 3 KENHLF-LVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 ++N LF L+DG S +RA+YA PL R G+P + GF N L +LL+ + Sbjct: 5 EQNKLFILIDGHSLAFRAYYAFAKSRSGPL--RTSTGIPTSVCFGFLNSLMQLLETQK-- 60 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 ++ AV FD A +FR+E +YKANR + PE P L ++ A IP + G+ Sbjct: 61 --PTYLAVAFDLAAPSFRHEADANYKANRQETPEEFRPDLTNLQSLLAAMNIPIVTSPGY 118 Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLY---DTVKE------EKI 163 EADD++ T A G+ V I++ D+DL QLV TT LY + VK + Sbjct: 119 EADDVLGTLAKQAGDHGYTVKILTGDRDLFQLVDEEKKTTVLYLDINAVKSTSGQGYTEF 178 Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223 + + V +K G+ P+++V +AL GD DNIPG+ GIG KTA LL++Y NL++I N Sbjct: 179 NSQAVTEKLGVTPKQVVDFKALCGDKSDNIPGVRGIGEKTAIDLLKKYDNLDDIYTNLES 238 Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283 IK + + +LE A SR L + D P+++ E L N + L LE K Sbjct: 239 IKGMVKTK-LLEGKTAAESSRYLAKIALDAPVSLEEEKFRLRGFNRRLVQPLLARLELKK 297 Query: 284 LINRV 288 ++ ++ Sbjct: 298 ILQKL 302 >gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A] gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A] Length = 955 Score = 327 bits (837), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 219/562 (38%), Positives = 326/562 (58%), Gaps = 50/562 (8%) Query: 445 LTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS 502 L+KE +L L+ EN+ + K+ N K+D+LVL GI + G D ML SYV++ +S Sbjct: 410 LSKEKVLEKLRPILENKCYPKVFQNAKFDRLVLLNQGIQLNGVVFDTMLASYVINPDKS- 468 Query: 503 HDIASIAQKWLSYTRKEI---LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559 H ++S+ +++L+ + LK K D + +QV + ++ L L+ + Sbjct: 469 HKLSSLCKQYLTNISSQDYLELKINKQQTIAD-LDITQVANYCGMDAYSTFLLVKPLKKR 527 Query: 560 L----IVEKL-LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614 L I+EKL L V + L+K V+S+ME GI ID + L +S + NLL LEE IY Sbjct: 528 LAEIPILEKLFLEVEQSLEK----VLSKMENQGILIDIEYLNNLSEQNKVNLLCLEEKIY 583 Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-TGQWKTTAQDLEQINCGDNPIIKNILE 673 + + EKFNL SPKQL ILF L+ + K T + T LE++ GD+PII +L+ Sbjct: 584 EEAKEKFNLESPKQLSKILFENLQLSTKKSKKITTGYSTNHAILEKLK-GDHPIIDYLLK 642 Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733 +R LSK++STY D+LP ++ +T R+HT ++ + T TGRL+S +PNLQNIPI+T+L +KI Sbjct: 643 YRTLSKLQSTYIDNLPTLVSNQTHRIHTSFNQSVTSTGRLSSSKPNLQNIPIRTELSRKI 702 Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 R+AFISP L+SADYSQIELRILAH+++ L + + + DIH + A +F + E++ Sbjct: 703 RKAFISPKKWLLVSADYSQIELRILAHLSQEPLLVKAYCDCQDIHTLSAQLLF--DKEEI 760 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 + + R KTINF +IYG+ R A + + ++ D+IK+Y R+ + +++E K Sbjct: 761 TIEERNLGKTINFGVIYGMGSQRFAREAGVTPTKGKDFIKKYHQRYKKVFQFLENLKIEA 820 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINE---------------------RAAINAPI 892 GYV TI GRR ++ N S+RN+ R+A NAPI Sbjct: 821 ITKGYVTTILGRRRYF---NFYSDSLRNLYGCNPDEINLDELKYSYSDSQLLRSAANAPI 877 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGS+ADI + AMI + K L +++ K+LLQ+HDELVFE+P EE+ I ME + Sbjct: 878 QGSSADIIKVAMIKIEKLLRNYQ--AKLLLQVHDELVFEIPLEELEELQSEIKQIMENS- 934 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + L +PL V I NW E Sbjct: 935 ---VKLTIPLLVEINSGINWME 953 Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 98/298 (32%), Positives = 150/298 (50%), Gaps = 29/298 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-----HDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L L+DG S +RA+YA L SR+ G+P + GF N L ++++ + + Sbjct: 10 LILIDGHSLAFRAYYAF-LNSRRGLLKTSTGIPTSICFGFLNSLMQVIKVEK----PKYV 64 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 A+ FD TFR++ YKA RP+ PE + + ++ + + I + G+EADDI+ Sbjct: 65 AIAFDSKEKTFRHKFDVSYKAGRPETPENFIVDIKNLQKVLEILNLFTITMPGYEADDIL 124 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSP---TTCLY------DTVKEE---KIDIEHVI 169 T A +G+ V I+S DKD QL+S + LY ++ E+ +I + VI Sbjct: 125 GTLATEASNKGYRVKILSGDKDTFQLISDEQNISVLYLGRSGVNSSSEKGYTEIISKTVI 184 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---Q 226 ++ GI ++V +AL GD DNIPG+ GIG KTA LL EY +E+I N IK Q Sbjct: 185 ERLGIASFQVVDYKALCGDKSDNIPGVKGIGEKTAVKLLTEYKTIESIYENIEHIKGANQ 244 Query: 227 KKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 KK +E E A SR L + T+ P+ ++ L + + + LE K Sbjct: 245 KKLKEGKSE----AEHSRYLAKIITNCPLVFNIDEFKLVGFDQATAQNIFEKLELKKF 298 >gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365] gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365] Length = 930 Score = 327 bits (837), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 196/524 (37%), Positives = 300/524 (57%), Gaps = 24/524 (4%) Query: 465 IGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLD-SGR-SSHDIASIAQKWLSYTRKEIL 521 + H++K +L + G D ML +Y+L G+ D+A A TRK +L Sbjct: 415 VAHDVKSLARLLRTLDAPLAGVLGDTMLAAYLLGQEGKLEVEDVAGAAVGAELPTRKSLL 474 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH---------VYERL 572 S +S I + + S A + +L W P+L E+L H +++ L Sbjct: 475 GSGRSKIGFEAVDISAAAMRAGGAAAAVLASW----PRL-GEQLEHAGGDGALRKLHDEL 529 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 + P+ +++++E GI +D L+ ++ E+ L +E +Y+L+GE+FNL SPKQLG + Sbjct: 530 ELPLALLLAEIEEHGITLDVPYLRALADELGGQLAGIERQVYELAGEEFNLGSPKQLGHM 589 Query: 633 LFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 LF KL + +TKTG + T + LE + + II I+E R+L K+K TY D+LP Sbjct: 590 LFEKLGLRADKMRRTKTGSYSTNHEILESM-AESHAIIPPIIEHRELLKLKGTYLDALPP 648 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADY 750 +N T R+HT ++ A TGRL+S +PNLQNIPI+ D+G++IRRAF++ P K L+S DY Sbjct: 649 LVNPHTGRIHTSFNQAVAATGRLSSQDPNLQNIPIRKDIGRRIRRAFVAAPGKTLVSIDY 708 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELR++AH++ L Q F+N +D+H AAE+F + E++ P RR AK +N+ ++Y Sbjct: 709 SQIELRVMAHLSGDERLVQAFQNDVDVHTQTAAEVFDLPREEIGPDERRVAKAVNYGLMY 768 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 G S F LA L I R++AA Y++RYF RF + Y+++ R G T+ GRR Sbjct: 769 GQSEFGLAQSLGISRAQAAHYMERYFERFSTVRAYMDQVVADARAEGAAVTLLGRRRPIP 828 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 ++++ R ER A N P+QGSAADI + AM+ V L + MLL +HDELVF Sbjct: 829 DLDARNQQRRRAAERVAQNTPVQGSAADIIKLAMLRVAAHLARGEWDASMLLTVHDELVF 888 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EV E+ T ++ ++ ME A L VPL + +++NW + Sbjct: 889 EVVPEQAETFAKAMIAEMEGAY----ALDVPLVASAGIADNWAD 928 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 123/317 (38%), Positives = 168/317 (52%), Gaps = 17/317 (5%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L ++DG +IYRA++A + LS K G+P A+ + ML +L + R E IA Sbjct: 4 LHILDGHGYIYRAYFALAGPGSQRLSTK-GGMPTAALFVYAQMLIRLFIDERPERIA--- 59 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V+FD P TFRNE+ YKA R + PE L PQLP T+A G P I QG EADD+I Sbjct: 60 -VVFDPPGRTFRNELDDAYKATRRETPEDLKPQLPYFSKLTEALGWPVICEQGVEADDVI 118 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 AT A +G+ V + S DKDLMQLV + D+++ D V KK+G+PP K+ Sbjct: 119 ATLVGRARAQGWDVVVYSGDKDLMQLVDEGVTVIDSLRSIVYDAARVEKKFGVPPAKLRD 178 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-KRRENILEYAETA 240 AL GD DN+PG+PG+G KTAA LL Y +++ IL + +K K R E E Sbjct: 179 YLALVGDVSDNVPGMPGVGAKTAAKLLGSYDSIDGILAHNEELKGKMGERFRDPEALERL 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY------DC 294 SR+LV LR+DV L+ L+ + G + + LEF L+ R++ Sbjct: 239 ARSRELVTLRSDVATDAELDALVQQPWEGAQAEELFRELEFETLLERLSAARPDVPSPSG 298 Query: 295 DAANIEPVVLDINTTEN 311 DAA P D N + Sbjct: 299 DAAATGPKGNDANADDG 315 >gi|303232660|ref|ZP_07319345.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4] gi|302481146|gb|EFL44221.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4] Length = 1126 Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 176/500 (35%), Positives = 291/500 (58%), Gaps = 13/500 (2%) Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKSSIPIDKISDS 536 +++ D L +Y+L+S +S+D+ + ++ SY ++ I + D + Sbjct: 633 AVAIDAVFDTQLAAYLLNSDAASYDVDELLMQYAGVASYPQQPIGSAAAHGFATDDDQKA 692 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 + A + +LQ L+ L++++ VY ++ P+I V+ ME TG+ +D D+L Sbjct: 693 LSEMLACAKAQRVLQAPLMY--ALMLDESYDVYCGIELPLICVLLDMERTGLHVDTDILH 750 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTA 654 + S I++ + + ++ GE N+ SP QL +LF + P+ KTK G + T A Sbjct: 751 EQSMAINREINHMLATLHTDIGETINIDSPMQLSHVLFDVWQLPTKGLKKTKRGYFSTNA 810 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 + LE ++ D+ + + IL++R+ +K+KSTY D+LP I K R+HT ++ TGRL+ Sbjct: 811 KTLETLSKQDDRV-QLILDYRERAKLKSTYLDALPAQI-KPDGRIHTTFNQTVAATGRLS 868 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S +PNLQNIP ++ LG ++R+AF ++ DYSQIELR+LAH+++ L F + Sbjct: 869 SSDPNLQNIPTRSQLGHRVRKAFTVADDSVFLTCDYSQIELRLLAHLSQDPHLIAAFNSG 928 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 D H A+ IFG+ + V+PQ+R AK +NF I+YG F LA+ L+I R+ A + I + Sbjct: 929 ADFHAATASRIFGIEQDAVTPQLRSRAKAVNFGIVYGQQAFGLASSLKISRATAKEMIDK 988 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF +P + E+++++ F R +GYV T++GR+ H + IN+ +R+ ER A+N P+QG Sbjct: 989 YFEVYPCVREFLDESVAFARAHGYVPTMYGRKRHIEHINASNFQLRSFAERTAMNHPMQG 1048 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 SAADI + AMI V K L L ++LQIHDEL FEV + S+++ +ME Sbjct: 1049 SAADIIKLAMIEVEKRLRASSLRAHLVLQIHDELDFEVATADCDALSELVKDAMEHV--- 1105 Query: 955 KINLRVPLKVNIKVSNNWQE 974 ++LRVPL +I ++NW + Sbjct: 1106 -VSLRVPLIADISYASNWAD 1124 Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 98/292 (33%), Positives = 151/292 (51%), Gaps = 24/292 (8%) Query: 9 LVDGSSFIYRAFYAT--PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DG+S ++RAF+A P+++ DG NA+ GF NML K+ + I FD Sbjct: 105 VIDGNSLMHRAFHAVRQPMVAP--DGRATNALLGFFNMLIKMYRTFTPNGII----CAFD 158 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 R ++Y YKA RP + L Q P+V+ A IP E+ G+E DDI+ T Sbjct: 159 KGKPQIRIDMYEKYKAQRPPMDPSLHEQFPMVKELLSALNIPVCELAGWEGDDILGTLAK 218 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHVIKKWGIPP 176 GF++ + + D+D+ QL S + + T K E+ D+ H GI P Sbjct: 219 QGSASGFSMMLFTGDRDIYQLASDSVTVVSTKKGVTDVAMMTPEDVDDLYH-----GITP 273 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + + L GD+ DNIPG+PGIG K AA L+ +YGNLE ++ +A + K E++ + Sbjct: 274 QLVPDFYGLKGDTSDNIPGVPGIGPKRAAQLIVQYGNLEAVIAHADEVP-GKMGESLRAH 332 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + ARLS+KL +RTD P+ +E + + R+ AL FT L ++ Sbjct: 333 IDDARLSKKLATIRTDAPLDFAIERCAFPNFDCERVAQAFLALGFTSLTTKL 384 >gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150] gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150] Length = 879 Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 175/406 (43%), Positives = 256/406 (63%), Gaps = 9/406 (2%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ +V+++MEI GI++ L +++ E + L + IY+++GE+FN++SPKQLG Sbjct: 478 MELPLANVLAKMEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEFNINSPKQLGV 537 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF K++ P KT +TA D+ + PI+ ILE+RQ++K++STY L ++ Sbjct: 538 ILFEKMELPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDY 597 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749 I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T+ L+S+D Sbjct: 598 I-LEDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PSTEDAVLLSSD 655 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSI 808 YSQIELR+LAHI+ L F+ DIH A +FG+ E V+P RR+AK +NF I Sbjct: 656 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGI 715 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS F L+ L I R +A +YI YF R+PGI Y+E + GYVET+F RR Sbjct: 716 VYGISDFGLSNNLGISRKKAKEYINTYFERYPGIKAYMENVVREAKDKGYVETLFHRRRE 775 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS ++RN ER AIN+PIQGSAADI + AMI++ K+L + TKMLLQ+HDE+ Sbjct: 776 LPDINSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEI 835 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 V EVP +E+ ++ +ME A + L VPL + W E Sbjct: 836 VLEVPNDELVAMKALVKETMEAA----VELAVPLIADENDGRTWYE 877 Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 118/315 (37%), Positives = 166/315 (52%), Gaps = 20/315 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M + L L+DGSS +RAF+A L + R ++GL NAI GF ML LL+ + Sbjct: 1 MTNQKKLLLIDGSSVAFRAFFA--LYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E++ DYKA R K PE Q P +R A GI ++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQFPYIREMLAARGIAYYDLAQY 114 Query: 116 EADDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE E + VTI+S DKDL+QL T + + K E E+++ Sbjct: 115 EADDIIGTLAKMAENTSEDYQVTIVSGDKDLIQLTDVNTVVEISKKGVAEFEAFTPEYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + +K+ K Sbjct: 175 EKMGITPTQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEGIYDHIDEMKKSKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV- 288 +EN++ + A LS+ L + T PI I L+ + +L +F + F + N + Sbjct: 235 KENLINDKDQAFLSKTLATIDTQSPIEIGLDDTAFTGPDLEKLAAFYDEMGFVQFKNALG 294 Query: 289 --ATTYDCDAANIEP 301 A D D A EP Sbjct: 295 GEAVPQDFDVAYEEP 309 >gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9] gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9] gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03] Length = 879 Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 174/406 (42%), Positives = 256/406 (63%), Gaps = 9/406 (2%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ +V+++ME+ GI++D L +++ E + L ++IY+++GE+FN++SPKQLG Sbjct: 478 MELPLANVLAKMEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAGEEFNINSPKQLGV 537 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF K+ P KT +TA D+ + PI+ ILE+RQ++K++STY L ++ Sbjct: 538 ILFEKMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDY 597 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749 I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ P TK L+S+D Sbjct: 598 I-LEDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PSTKDAVLLSSD 655 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSI 808 YSQIELR+LAHI+ L F+ DIH A +FG+ E V+P RR+AK +NF I Sbjct: 656 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGI 715 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS F L+ L I R +A +YI YF R+PGI Y++ + GYV T+F RR Sbjct: 716 VYGISDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRE 775 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS ++RN ER AIN+PIQGSAADI + AMI++ K+L + TKMLLQ+HDE+ Sbjct: 776 LPDINSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEI 835 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 V EVP +E+ ++ +ME A + L VPL + W E Sbjct: 836 VLEVPSDELLAMKALVKETMESA----VELAVPLIADENEGCTWYE 877 Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 120/315 (38%), Positives = 169/315 (53%), Gaps = 20/315 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M + L L+DGSS +RAF+A L + R ++GL NAI GF ML LL+ + Sbjct: 1 MTNQKKLLLIDGSSVAFRAFFA--LYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E++ DYKA R K PE QLP +R A GI ++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLAARGIAYYDLAQY 114 Query: 116 EADDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE E F +T++S DKDL+QL T + + K E ++++ Sbjct: 115 EADDIIGTLAKMAENTSEAFQITVVSGDKDLIQLTDENTVVEISKKGVAEFEAFTPDYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P + V L+AL GD DNIPG+ IG KT LL E+G+LE I + +K+ K Sbjct: 175 EKMGITPAQFVDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEGIYDHIDEMKKSKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV- 288 +EN++ E A LS+ L + T PI I L+ + N +L++F + F N + Sbjct: 235 KENLINDKEQAFLSKTLATIDTQSPIEIGLDDTAFKGPNLEKLLAFYDEMGFVHFKNALR 294 Query: 289 --ATTYDCDAANIEP 301 A D D A +EP Sbjct: 295 GEAVPQDFDVAYVEP 309 >gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B] gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B] Length = 910 Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 184/515 (35%), Positives = 295/515 (57%), Gaps = 11/515 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEIL 521 K+ H+ K L L G ++RG D L +Y++ G+ S D+A +A ++L R E Sbjct: 400 KVLHDAKGPILALAARGWTLRGLASDTALAAYLVLPGQRSFDLADLAVRYLRRELRAEAG 459 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + + D A ++ +L L +L ++ + ++ P+IDV++ Sbjct: 460 SAGDGQLSFEMAGDEATAAAAGVHARAVLDLAEVLDAEVAARGGARLLRDVELPLIDVLA 519 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME GI +D D L +SAE++ ++ + E+ Y + G +FNL SPKQL ILF +L+ P Sbjct: 520 AMERAGIAVDVDTLVDLSAELAAHVKATEQAAYQVVGREFNLGSPKQLQQILFEELRLPK 579 Query: 642 GAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 + KTG + T A+ L+ + +P+++++L R +S++K+T DSL ++ R+H Sbjct: 580 TKRIKTG-YTTDAEALQNLLAQTGHPLLEHLLRHRDVSRLKAT-VDSLIPMVDAEG-RIH 636 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759 T ++ TGRL+S +PNLQNIPI+T G++IR+AF+ + L++ADYSQIE+RI+A Sbjct: 637 TTFNQMVAATGRLSSQDPNLQNIPIRTAEGRRIRQAFVVGKGYEALLTADYSQIEMRIMA 696 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+++ L + F + D H AA +FGV E+V +MRR K +N+ + YG+S + L+ Sbjct: 697 HLSQDQALIEAFRSGFDFHAATAASVFGVRPEQVDAEMRRRVKAMNYGLAYGLSAYGLSQ 756 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL I EA ++ YF RF G+ +Y+ R++GY ET+ GRR + ++ S Sbjct: 757 QLGITPDEARVLMEEYFRRFGGVRDYLRTVVERARRDGYTETLLGRRRYLPDLTSDNRQR 816 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R + ER A+NAPIQGSAADI + AM+ V ++L +++LLQ+HDELV EV E Sbjct: 817 REMAERMALNAPIQGSAADIIKVAMLGVDRALRAAGAKSRLLLQVHDELVLEVAPGERAD 876 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I+ M A L VPL+V++ V W E Sbjct: 877 VEEIVRREMGHAY----ELSVPLEVSVGVGRTWDE 907 Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 101/294 (34%), Positives = 154/294 (52%), Gaps = 16/294 (5%) Query: 6 HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L L+DG S YRAFYA P+ + G P NA+ GF ML +L++ + +H V Sbjct: 23 RLLLLDGHSLAYRAFYALPVENFATTTGQPTNAVYGFTAMLINVLRDEQP----THVGVA 78 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YKA R P+ Q+ L++ +A IP + +G+EADD+IAT Sbjct: 79 FDVSRETFRSAAYTEYKATRLATPDAFKGQVELIQDVLRALRIPVVTAEGYEADDVIATL 138 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 A GF V I + D+D QLVS P + D + +E +++G+ PE Sbjct: 139 ADQAAAAGFDVLICTGDRDTFQLVSDRVTVLYPRKGVSDLARMTPAAVE---ERYGLRPE 195 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 + AL GD DN+PGIPGIG KTAA L++++G+L+ ++ + K + ++ Sbjct: 196 QYPDFAALRGDPSDNLPGIPGIGEKTAAKLIRDFGSLQELVARIDEVPGKT-GAVLRDHL 254 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 T +R+L L +VP+ + L+ L L+ + + ALEF L R+ T Sbjct: 255 ATVLRNRQLTELVRNVPLAVRLDDLRLQAWDRDAVHQVFDALEFRVLRERLYAT 308 >gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] Length = 905 Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 193/524 (36%), Positives = 293/524 (55%), Gaps = 31/524 (5%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 KI H+ K L L G ++ G D L +Y+ SGR S D+ +A+ E+L Sbjct: 397 KILHDAKGPSLALAARGFTLAGVAADTALEAYLAQSGRRSFDLEPLAE--------EVLG 448 Query: 523 SRKSSIPIDK-----ISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 R S D+ +D + E + ++ +L L LR KL + ++ P+ Sbjct: 449 RRLSPAGADENQGTLFADEDAEAERQMAAAHAVLDLADALRGKLAETGAEQLLTDIELPL 508 Query: 577 IDVVSQMEITGIQID----QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 + V+++ME GI ID QDL K S E +K + + + E NL SPKQL ++ Sbjct: 509 VGVLAEMEQVGIAIDERLFQDLEKGFSGEAAKEV---DAARAEAGVETLNLGSPKQLQEV 565 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNH 691 LF L P K KTG + T A L + +P + ++L WR+++++K T + L Sbjct: 566 LFENLGMPKTKKIKTG-YTTDADSLAWLQAQTQHPFLDHLLRWREVNRLK-TVVEGLSKS 623 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADY 750 ++ T R+HT Y+ TGRL+S++PNLQNIPI+T GQ+IR+AFI+ P + L++ADY Sbjct: 624 VSPDT-RIHTTYNQMIAATGRLSSVDPNLQNIPIRTLEGQQIRKAFIAGPGYESLMTADY 682 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIE+RI+AH+++ L + F + D+H VAA++F V V P+ RR K +++ + Y Sbjct: 683 SQIEMRIMAHLSEDAGLIEAFTSGEDLHNTVAAKVFDVEATAVEPEHRRRIKAMSYGLAY 742 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 G+S F L+ QL I EAA ++ YF RF G+ +Y+ R GY ET+FGRR + Sbjct: 743 GLSAFGLSQQLGIETGEAAKMMEDYFQRFGGVRDYLHDLVVQARATGYTETMFGRRRYLP 802 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 ++ S R + ER A+NAPIQGSAADI + AMI V + L + +L ++MLLQ+HDELV Sbjct: 803 DLASDNRQRREMAERMALNAPIQGSAADIIKVAMIRVREGLREQQLKSRMLLQVHDELVL 862 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+ E +++ M A LRVPL V++ ++ NW + Sbjct: 863 EIAPGEAPRVEELVRREMGSAA----ELRVPLDVSVGMAENWAD 902 Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 109/299 (36%), Positives = 155/299 (51%), Gaps = 16/299 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRA+YA R G P A+ GF +ML L++ R +H AV F Sbjct: 17 LLLLDGHSLAYRAYYALKEADLRTTTGQPTGAVQGFTSMLINTLRDERP----THVAVAF 72 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E +P+YKANR P+ Q+ L+ GI I +GFEADD+IAT T Sbjct: 73 DVSRQTFRTEKFPEYKANRSASPDDFKSQVGLIDELLAGLGITVIRKEGFEADDVIATLT 132 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 A +G+ V I++ D+D +QLV+ T LY K D+ V +K+ + P++ Sbjct: 133 TQAAADGYEVRILTGDRDSLQLVTENVTVLYP--KRGVSDLSRFTPAAVEEKYELTPQQY 190 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 AL GD DN+P IPG+G KTAA ++E+G+L ++ A +K K E + + E Sbjct: 191 PDFAALRGDPSDNLPNIPGVGEKTAAKWIREFGSLTELIERADEVKGKA-GETLRAHLEQ 249 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLI-SFLKALEFTK-LINRVATTYDCDA 296 RL+R+L L DVP+ L P + LEF++ + +RVA DA Sbjct: 250 VRLNRELTELIKDVPLPAGPPDLAWASEGNPEAVYQLFDTLEFSRSMRDRVAPLLASDA 308 >gi|9789856|sp|P56105|DPO1_HELPY RecName: Full=DNA polymerase I; Short=POL I Length = 891 Score = 326 bits (835), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 280/990 (28%), Positives = 457/990 (46%), Gaps = 126/990 (12%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K ++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYRALIH 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 +A LS++L L ++ C P LK + K ++T D + Sbjct: 237 DKASAFLSKELATLERGC-----IKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLE 291 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 + P++LD + A+ D T K S L P FLE+L Sbjct: 292 NSPT-PLILDNAPLLDNTPAL------DNTPKKSCMIVLESAA--------PLSAFLEKL 336 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +K N + ++V K+ K +A+A D Sbjct: 337 EK-----TNARVFARLVLDKE---------------------------KKVLALAFLYED 364 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YDK 473 Q + E +F S+ Q++ FF+ +H IGH++K Sbjct: 365 QGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHDLKPLLS 407 Query: 474 LVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIP 529 + +Y + + +D +++++ + + D E+LK ++ IP Sbjct: 408 FLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLKEELIP 453 Query: 530 IDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 +KI D + + +E N + +L + E LL + ++ P + V+ ME Sbjct: 454 HEKIKDFKTKAEKLELLSVELNALKRLCEYFEKGGLEENLLSLAREIETPFMKVLMGMEF 513 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 G +ID K++ E L LE I +L G FNL+SPKQL ++L+ KL P K+ Sbjct: 514 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEVLYDKLGLPKN-KS 572 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 + K+ + L++ +P I ILE+R+L+K+ +TY L + + ++HT + Sbjct: 573 HSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTFIQ 626 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKI 764 T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+LAH ++ Sbjct: 627 TGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQD 686 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + F DIH + +FG E ++ + R AK+INF ++YG+ +L+ L I Sbjct: 687 KDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGSKKLSETLNIS 743 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 +EA YI+ YF RFP I +Y+ + K + + T+ GR +D ++ Sbjct: 744 LNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDYVKGNYL 802 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Q I Sbjct: 803 REGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPELQQEI 861 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + P LRVPL+ + ++ W E Sbjct: 862 QRILNDEVYP---LRVPLETSAFIAKRWNE 888 >gi|15646079|ref|NP_208261.1| DNA polymerase I (polA) [Helicobacter pylori 26695] gi|2314647|gb|AAD08510.1| DNA polymerase I (polA) [Helicobacter pylori 26695] Length = 892 Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 280/990 (28%), Positives = 457/990 (46%), Gaps = 126/990 (12%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 8 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 64 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 65 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEAD 122 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 123 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 177 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K ++ Sbjct: 178 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYRALIH 237 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 +A LS++L L ++ C P LK + K ++T D + Sbjct: 238 DKASAFLSKELATLERGC-----IKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLE 292 Query: 296 AANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERL 355 + P++LD + A+ D T K S L P FLE+L Sbjct: 293 NSPT-PLILDNAPLLDNTPAL------DNTPKKSCMIVLESAA--------PLSAFLEKL 337 Query: 356 QKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD 415 +K N + ++V K+ K +A+A D Sbjct: 338 EK-----TNARVFARLVLDKE---------------------------KKVLALAFLYED 365 Query: 416 QKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFEN-EHFLKIGHNIK-YDK 473 Q + E +F S+ Q++ FF+ +H IGH++K Sbjct: 366 QGYFLPLE-EALFSPFSLEFLQNA----------------FFKMLQHAQIIGHDLKPLLS 408 Query: 474 LVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIP 529 + +Y + + +D +++++ + + D E+LK ++ IP Sbjct: 409 FLKAKYQVPLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLKEELIP 454 Query: 530 IDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 +KI D + + +E N + +L + E LL + ++ P + V+ ME Sbjct: 455 HEKIKDFKTKAEKLELLSVELNALKRLCEYFEKGGLEENLLSLAREIETPFMKVLMGMEF 514 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 G +ID K++ E L LE I +L G FNL+SPKQL ++L+ KL P K+ Sbjct: 515 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEVLYDKLGLPKN-KS 573 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 + K+ + L++ +P I ILE+R+L+K+ +TY L + + ++HT + Sbjct: 574 HSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTTFIQ 627 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKI 764 T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+LAH ++ Sbjct: 628 TGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQD 687 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + F DIH + +FG E ++ + R AK+INF ++YG+ +L+ L I Sbjct: 688 KDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGSKKLSETLNIS 744 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 +EA YI+ YF RFP I +Y+ + K + + T+ GR +D ++ Sbjct: 745 LNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-FTGANDYVKGNYL 803 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Q I Sbjct: 804 REGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPELQQEI 862 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + P LRVPL+ + ++ W E Sbjct: 863 QRILNDEVYP---LRVPLETSAFIAKRWNE 889 >gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066] gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066] Length = 879 Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 173/406 (42%), Positives = 256/406 (63%), Gaps = 9/406 (2%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ +V+++ME+ GI++D L +++ E + L ++IY+++GE+FN++SPKQLG Sbjct: 478 MELPLANVLAKMEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAGEEFNINSPKQLGV 537 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF K+ P KT +TA D+ + PI+ ILE+RQ++K++STY L ++ Sbjct: 538 ILFEKMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDY 597 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749 I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ P TK L+S+D Sbjct: 598 I-LEDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PSTKDAVLLSSD 655 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSI 808 YSQIELR+LAHI+ L F+ DIH A +FG+ E V+P RR+AK +NF I Sbjct: 656 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGI 715 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS F L+ L I R +A +YI YF R+PGI Y++ + GYV T+F RR Sbjct: 716 VYGISDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKNKGYVSTLFHRRRE 775 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS ++RN ER AIN+PIQGSAADI + AMI++ K+L + TKMLLQ+HDE+ Sbjct: 776 LPDINSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEI 835 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + EVP +E+ ++ +ME A + L VPL + W E Sbjct: 836 ILEVPRDELLAMKALVKETMEAA----VELAVPLIADENEGCTWYE 877 Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 120/315 (38%), Positives = 169/315 (53%), Gaps = 20/315 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M + L L+DGSS +RAF+A L + R ++GL NAI GF ML LL+ + Sbjct: 1 MTNQKKLLLIDGSSVAFRAFFA--LYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E++ DYKA R K PE QLP +R A GI ++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLAARGIAYYDLAQY 114 Query: 116 EADDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE E F +T++S DKDL+QL T + + K E ++++ Sbjct: 115 EADDIIGTLAKMAENTSEAFQITVVSGDKDLIQLTDENTVVEISKKGVAEFEAFTPDYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P + V L+AL GD DNIPG+ IG KT LL E+G+LE I + +K+ K Sbjct: 175 EKMGITPAQFVDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEGIYDHIDEMKKSKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV- 288 +EN++ E A LS+ L + T PI I L+ + N +L++F + F N + Sbjct: 235 KENLINDKEQAFLSKTLATIDTQSPIEIGLDDTAFKGPNLEKLLAFYDEMGFVHFKNALR 294 Query: 289 --ATTYDCDAANIEP 301 A D D A +EP Sbjct: 295 GEAVPQDFDVAYVEP 309 >gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311] gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG 18311] Length = 879 Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 173/406 (42%), Positives = 256/406 (63%), Gaps = 9/406 (2%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ +V+++ME+ GI++D L +++ E + L ++IY+++GE+FN++SPKQLG Sbjct: 478 MELPLANVLAKMEMAGIKVDGQTLNEMAVENQAVIDKLTQDIYEMAGEEFNINSPKQLGV 537 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF K+ P KT +TA D+ + PI+ ILE+RQ++K++STY L ++ Sbjct: 538 ILFEKMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDY 597 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749 I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ P TK L+S+D Sbjct: 598 I-LEDGKIHTRYMQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PSTKDAVLLSSD 655 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSI 808 YSQIELR+LAHI+ L F+ DIH A +FG+ E V+P RR+AK +NF I Sbjct: 656 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGI 715 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS F L+ L I R +A +YI YF R+PGI Y++ + GYV T+F RR Sbjct: 716 VYGISDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRE 775 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS ++RN ER AIN+PIQGSAADI + AMI++ K+L + TKMLLQ+HDE+ Sbjct: 776 LPDINSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEI 835 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + EVP +E+ ++ +ME A + L VPL + W E Sbjct: 836 ILEVPRDELLAMKALVKETMEDA----VELAVPLIADENEGCTWYE 877 Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 120/315 (38%), Positives = 169/315 (53%), Gaps = 20/315 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M + L L+DGSS +RAF+A L + R ++GL NAI GF ML LL+ + Sbjct: 1 MTNQKKLLLIDGSSVAFRAFFA--LYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E++ DYKA R K PE QLP +R A GI ++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLAARGIAYYDLAQY 114 Query: 116 EADDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE E F +T++S DKDL+QL T + + K E ++++ Sbjct: 115 EADDIIGTLAKMAENTSEAFQITVVSGDKDLIQLTDENTVVEISKKGVAEFEAFTPDYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P + V L+AL GD DNIPG+ IG KT LL E+G+LE I + +K+ K Sbjct: 175 EKMGITPAQFVDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEGIYDHIDEMKKSKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV- 288 +EN++ E A LS+ L + T PI I L+ + N +L++F + F N + Sbjct: 235 KENLINDKEQAFLSKTLATIDTQSPIEIGLDDTAFKGPNLEKLLAFYDEMGFVHFKNALR 294 Query: 289 --ATTYDCDAANIEP 301 A D D A +EP Sbjct: 295 GEAVPQDFDVAYVEP 309 >gi|323484247|ref|ZP_08089615.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum WAL-14163] gi|323694766|ref|ZP_08108924.1| DNA polymerase I [Clostridium symbiosum WAL-14673] gi|323402399|gb|EGA94729.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum WAL-14163] gi|323501203|gb|EGB17107.1| DNA polymerase I [Clostridium symbiosum WAL-14673] Length = 890 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 176/490 (35%), Positives = 294/490 (60%), Gaps = 11/490 (2%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIE 544 D + Y+L+ + ++D +A+ +L T + +++ + D + D + Q Sbjct: 407 DAGVAGYLLNPLKDTYDYDDLARDYLDMTVPSKADLMGKTSFTAAFDMMPD-KAQTCVCY 465 Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 + V + L KL + ++ ++ P+I + M+ GI + ++ L+ + Sbjct: 466 MAYVAWKAKPELVKKLEASGMRKLFFDIEMPVIYSLYHMQEEGICVRREELRCYGERLKV 525 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664 + LE+ IY + +FN++SPKQLG+ILF ++K P G KTKTG + T A LE++ + Sbjct: 526 QIDKLEQEIYQDTETEFNINSPKQLGEILFDRMKMPGGKKTKTG-YSTAADVLEKL-APE 583 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 P+++ +L++RQL+K+KSTYAD L I + R+H ++ T TGR++S EPNLQNIP Sbjct: 584 YPVVRKVLDYRQLTKLKSTYADGLAAFI-REDGRIHGTFNQTITATGRISSTEPNLQNIP 642 Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 ++ +LG++IR+ F+ L+ ADYSQIELR+LAH++ L + + DIH + A+E Sbjct: 643 VRMELGREIRKVFVPQEGCVLLDADYSQIELRVLAHMSGDERLIDAYRMAEDIHAITASE 702 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +F V +E+V+P RR+AK +NF I+YGIS F L+ L I R EA +YI RYF +P + + Sbjct: 703 VFHVPLEEVTPLQRRNAKAVNFGIVYGISAFGLSEDLSISRKEALEYINRYFETYPEVKK 762 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 +++ ++ GYVET+FGRR E+ S R+ ER A+N+PIQG+AADI + AM Sbjct: 763 FLDHLVELGKEQGYVETMFGRRRPIPELKSANFMQRSFGERVAMNSPIQGTAADIIKIAM 822 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 I V + L KL ++++LQ+HDEL+ E +E+ +++ M+ A +L+V L++ Sbjct: 823 IRVDQRLRKEKLRSRLVLQVHDELLIETWTDELEKVQKVLEEEMKNAA----HLKVELEI 878 Query: 965 NIKVSNNWQE 974 ++K ++W E Sbjct: 879 DMKTGHSWFE 888 Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 94/296 (31%), Positives = 161/296 (54%), Gaps = 17/296 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG S + RAFY P L+ GL NA+ GF +++++++++ + A H AV FD Sbjct: 4 LVLIDGHSILNRAFYGVPELTNSK-GLHTNAVYGFLSIMFRVIEDEK----ADHLAVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++++ YK R +PE L Q+P+++ + GIP + G+EADDI+ T Sbjct: 59 LKDPTFRHKMFEAYKGTRKPMPEELHEQVPVIKEVLASMGIPILTRPGYEADDILGTIAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +G V+++S D+DL+QL P T T ++ + V ++ + P + Sbjct: 119 RCAAQGVEVSVVSGDRDLLQLADEKIKIRMPRTSRGTTEIKDYYPAD-VQAEYHVTPTEF 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + ++AL GD+ DNIPG+P IG KTA L+ YG++EN N +K + ++ + E+ + Sbjct: 178 IDVKALMGDASDNIPGVPSIGEKTATSLITAYGSIENAYANIDEVKPPRAQKALREHYDM 237 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A++S++L + D I LE + + P +K LEF ++ + +D D Sbjct: 238 AQMSKELATICIDCDIDFTLEDARINNLYTPEAYQHMKQLEFKSILQK----FDAD 289 >gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629] gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1] Length = 903 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 187/498 (37%), Positives = 300/498 (60%), Gaps = 22/498 (4%) Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV---- 538 RG + D+M+ +Y+++ + ++A+ +L +L S+K + K+ +Q+ Sbjct: 415 RGRYFDMMVAAYLINPLVGEYPYDAVAKDYLGL----MLSSKKDYL--GKLDFTQMMKED 468 Query: 539 QEHAIENSNV-ILQLWL---LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 ++ A++ + + W +L KL +L +Y ++ P++ V+ ME GI+ D Sbjct: 469 EKKAVDCACYEVYTAWKSKPVLLQKLKEMDMLTLYRDIELPLVFVLYDMENEGIRADGIK 528 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 LK+ +++ ++ LE+ IY+ +GE+FN++SPKQLG ILF KL P+ KTKTG + T A Sbjct: 529 LKEYGDKLAVSITELEKKIYEAAGEEFNINSPKQLGVILFEKLGLPNEKKTKTG-YSTAA 587 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE++ + PI+ +ILE+RQL+K+KSTYAD L +I ++HT + T TGRL+ Sbjct: 588 DVLEKL-APEYPIVADILEYRQLTKLKSTYADGLSGYI-ASDGKIHTTLNQTITATGRLS 645 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S EPNLQNIPI+ +LG+ IR+ F+ + +DYSQIELR+LA ++ + + F+N Sbjct: 646 STEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDERMIEAFKNG 705 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIHR A+ +F ++V+ RR+AK +NF I+YGIS F L+ L I R EA YI Sbjct: 706 QDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYGISAFGLSNDLGISRKEAQGYIDS 765 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF ++P I E++++T ++NGY +T+FGR E+NS R ER A+N+PIQG Sbjct: 766 YFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIRPIPELNSSNFMQRQFGERVAMNSPIQG 825 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AADI + AMI VH L D L ++++LQ+HDEL+ E E E ++ +EK Sbjct: 826 TAADIIKIAMIRVHDRLLDEGLKSRLILQVHDELLIETKEAE----KDKVIKLLEKEMRG 881 Query: 955 KINLRVPLKVNIKVSNNW 972 +N++V ++V + +W Sbjct: 882 AVNMKVSMEVGTECGYDW 899 Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 95/255 (37%), Positives = 153/255 (60%), Gaps = 11/255 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG S + RA++ P L+ +GL NA+ GF N+++K+L + + + V FD Sbjct: 5 LVLIDGHSILNRAYHGLPDLTNS-EGLHTNAVYGFLNIMFKILDEEKPD----YLTVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ ++ YK R + E L Q+P+++ A GI +E +G+EADDI+ T + Sbjct: 60 VHAPTFRHRMFDAYKGTRKPMDEELRQQVPMIKEMLTAMGIKIVEKEGYEADDILGTLSV 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180 AEK G V IIS D+DL+QL + + K+ +IE+ VI+K+G+ P++ + Sbjct: 120 RAEKAGMDVAIISGDRDLLQLATDHVMVRIPKTKKTGTEIENYNTADVIEKYGVTPKEFI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++AL GD+ DNIPG+PGIG KTA L+ +Y +E + +A +K + +NI+EY E A Sbjct: 180 DVKALQGDTSDNIPGVPGIGEKTAGALIAKYHCIEAVHEDAENVKPPRASKNIVEYWEQA 239 Query: 241 RLSRKLVMLRTDVPI 255 +S++L + D P+ Sbjct: 240 LMSKELATIILDAPV 254 >gi|302386264|ref|YP_003822086.1| DNA polymerase I [Clostridium saccharolyticum WM1] gi|302196892|gb|ADL04463.1| DNA polymerase I [Clostridium saccharolyticum WM1] Length = 850 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 177/494 (35%), Positives = 297/494 (60%), Gaps = 23/494 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIE 544 D + Y+L+ + S++ +A +L + R E++ KSS+ K + + +E A+ Sbjct: 367 DASIAGYLLNPLKDSYEYNDLAADYLDLSIPSRTELIG--KSSM---KRAMEENKEKAV- 420 Query: 545 NSNVILQLWLLLRPKLIVEKLLH------VYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 S + ++ R + ++++ L ++ ++ P+ + +ME GI++++ LLK+ Sbjct: 421 -SCICYMSYVAFRSRDLLQEALEKAGMDKLFYEIEMPLTYSLYRMEDAGIRVERKLLKEY 479 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 + + LE+ IY+ +GE FN++SPKQLG++LF +K P G KTKTG + T A LE Sbjct: 480 GDRLKVRIAELEQKIYEETGETFNINSPKQLGEVLFDHMKIPGGKKTKTG-YSTAADVLE 538 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 ++ D P ++ IL++RQL+K+ STYAD L +I +R+H ++ T TGR++S EP Sbjct: 539 KL-ASDWPAVRLILDYRQLTKLNSTYADGLAAYIGP-DERIHGTFNQTITATGRISSTEP 596 Query: 719 NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NLQNIP++ +LG++IR+ F+ I ADYSQIELR+LAH++ L ++ + DIH Sbjct: 597 NLQNIPVRMELGREIRKVFVPQEGCVFIDADYSQIELRVLAHMSGDQRLIGAYKQAEDIH 656 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 + A+++F V + +V+P RR+AK +NF I+YGIS F L+ L I R EA++YI++YF Sbjct: 657 AITASQVFHVPLHEVTPLQRRNAKAVNFGIVYGISSFGLSEGLSITRKEASEYIEKYFET 716 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 +PG+ +++ ++ GY ++FGRR E+ S R+ ER A+N+PIQG+AAD Sbjct: 717 YPGVKTFLDGLVAEAKELGYAASMFGRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAAD 776 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I + AMI V +L L ++++LQ+HDEL+ E EE +++ M+ A +L Sbjct: 777 IIKIAMIRVDGALRKQGLRSRIVLQVHDELLIEAYREEADQVKELLAEEMKHAA----DL 832 Query: 959 RVPLKVNIKVSNNW 972 V L+V ++W Sbjct: 833 AVSLEVEANAGDSW 846 Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/258 (25%), Positives = 110/258 (42%), Gaps = 33/258 (12%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 + L+DGSS AFY GLP N + G +M+ KLL A +FA F Sbjct: 5 RIILIDGSSMAENAFY----------GLPSNGVKGIQSMVMKLLDAKE----ADYFAAAF 50 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D R E + + L + + GI ++ +G+ + DI+A+ Sbjct: 51 DSERENGRKEFLKSAGLYEELLKQEELLKETF-----HSMGISVLDKKGYASSDILASLA 105 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLY------DTVKEEKIDIEHVIKKWGIPPEKM 179 ++E + ++S D+ L+Q V L D ++ + IE + +++G+ P + Sbjct: 106 KRCQEEEGEIILLSGDRKLLQAVEEHVTLKLPAVGEDGLEFKSYSIEGIREEYGLEPGDL 165 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + + LT GIG KTA L+++Y +ENI +I+ + RE + E Sbjct: 166 LGVFGLTE--------AKGIGEKTACDLIKKYHTIENIYQQMEKIESHRIRETLTRNKEK 217 Query: 240 ARLSRKLVMLRTDVPITI 257 R L LR D I + Sbjct: 218 VRKKEALSALRRDCDIRL 235 >gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 880 Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 174/421 (41%), Positives = 264/421 (62%), Gaps = 12/421 (2%) Query: 561 IVEKL-----LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615 +VEKL + +Y ++ P+ +V+++MEI GI++++ L+ ++ + + +L + IYD Sbjct: 463 MVEKLADHDQIDLYHEIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYD 522 Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675 ++G++FN++SPKQLG ILF K++ P KT +TA D+ + PI+ IL++R Sbjct: 523 MAGQEFNINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYR 582 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 Q++K++STY L ++I ++HT Y T TGRL+S++PNLQNIPI+ + G+ IR+ Sbjct: 583 QITKLQSTYVIGLQDYI-LADGKIHTRYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRK 641 Query: 736 AFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKV 793 AF S L+S+DYSQIELR+LAHI+ L F DIH A +FG++ V Sbjct: 642 AFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADV 701 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 + RR+AK +NF I+YGIS F L+ L I R +A YI YF R+PGI Y+E Sbjct: 702 TANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREA 761 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET+F RR +INS ++R+ ER AIN+PIQGSAADI + AMI++ +L+ Sbjct: 762 KDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDNALQA 821 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 KMLLQ+HDE+V EVP +E+T +++ +ME A ++L VPL+ + +W Sbjct: 822 GGFKAKMLLQVHDEIVLEVPNDELTAIKKLVKDTMEAA----VDLAVPLRADENAGQSWY 877 Query: 974 E 974 E Sbjct: 878 E 878 Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 117/304 (38%), Positives = 167/304 (54%), Gaps = 23/304 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLEHMMKRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K PE Q P +R A GI E++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVIEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHVEGFKASKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286 +EN+L + A LS+ L + T PITI L+ ++ NGP + S F ++F +L Sbjct: 235 KENLLNDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSKFYDEMDFVQLKK 291 Query: 287 RVAT 290 +A+ Sbjct: 292 GLAS 295 >gi|56808533|ref|ZP_00366268.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pyogenes M49 591] Length = 418 Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 173/418 (41%), Positives = 263/418 (62%), Gaps = 7/418 (1%) Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 KL + L +Y+ ++ P+ +V+++MEI GI++++ L+ ++ + + +L + IYD++G Sbjct: 4 KLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAG 63 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 ++FN++SPKQLG ILF K++ P KT +TA D+ + PI+ IL++RQ++ Sbjct: 64 QEFNINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQIT 123 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 K++STY L ++I ++HT Y T TGRL+S++PNLQNIPI+ + G+ IR+AF Sbjct: 124 KLQSTYVIGLQDYI-LADGKIHTRYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFT 182 Query: 739 -SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQ 796 S L+S+DYSQIELR+LAHI+ L F DIH A +FG++ V+ Sbjct: 183 PSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTAN 242 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 RR+AK +NF I+YGIS F L+ L I R +A YI YF R+PGI Y+E + Sbjct: 243 DRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDK 302 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GYVET+F RR +INS ++R+ ER AIN+PIQGSAADI + +MI++ K+L+ Sbjct: 303 GYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGSAADILKISMINLDKALQAGGF 362 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 K LLQ+HDE+V EVP +E+T +++ +ME A ++L VPL V+ +W E Sbjct: 363 RAKCLLQVHDEIVLEVPNDELTAIKKLVKDTMEAA----VDLAVPLCVDESTGQSWYE 416 >gi|310814704|ref|YP_003962668.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] gi|308753439|gb|ADO41368.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] Length = 339 Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 154/297 (51%), Positives = 210/297 (70%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +HL L+DGS++I+RA++A P L+RK DGLP+ A+AGFC ML + ++N+ A+H A Sbjct: 11 KGSHLHLIDGSAYIFRAYHALPPLTRKSDGLPIGAVAGFCAMLQRYVENNNGPEAATHIA 70 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 VIFD ++TFRN+IYP+YKA+RP +PE L PQ PL R AT AF I EI+GFEADDIIA Sbjct: 71 VIFDKGSITFRNDIYPEYKAHRPPLPEDLRPQFPLTRAATAAFNIAYKEIEGFEADDIIA 130 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 T A + G VT+IS+DKDLMQLV P C++D +K + ID + VI+K+G+ P+++V + Sbjct: 131 TLAREAAEAGGRVTVISSDKDLMQLVGPAVCMFDPMKNKLIDADGVIEKFGVAPDRVVDV 190 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 QAL GDS+DN+PG PGIG KTAA L+ EYG+L+N+L NA++IKQ KRRE ++ +A+ R+ Sbjct: 191 QALAGDSVDNVPGAPGIGIKTAAQLIGEYGDLDNLLANAAQIKQPKRRETLINFADQIRV 250 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 SR+LV L VP+ L L+L L+ FL +EF + RVA DA I Sbjct: 251 SRRLVQLDAQVPLDFTLADLVLRAPEPEVLLGFLTEMEFRNISKRVADKMGVDAPMI 307 >gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126] gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126] Length = 879 Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 174/406 (42%), Positives = 255/406 (62%), Gaps = 9/406 (2%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ +V+++MEI GI++ L +++ E + L + IY+++GE+FN++SPKQLG Sbjct: 478 MELPLANVLAKMEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEFNINSPKQLGV 537 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF K+ P KT +TA D+ + PI+ ILE+RQ++K++STY L ++ Sbjct: 538 ILFEKMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDY 597 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749 I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T+ L+S+D Sbjct: 598 I-LEDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PSTEDAVLLSSD 655 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSI 808 YSQIELR+LAHI+ L F+ DIH A +FG+ E V+P RR+AK +NF I Sbjct: 656 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGI 715 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS F L+ L I R +A +YI YF R+PGI Y++ + GYVET+F RR Sbjct: 716 VYGISDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRE 775 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS ++RN ER AIN+PIQGSAADI + AMI++ K+L + TKMLLQ+HDE+ Sbjct: 776 LPDINSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEI 835 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 V EVP +E+ ++ +ME A + L VPL + W E Sbjct: 836 VLEVPNDELVAMKALVKETMEAA----VELAVPLIADENDGRTWYE 877 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/315 (36%), Positives = 166/315 (52%), Gaps = 20/315 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M + L L+DGSS +RAF+A L + R ++GL NAI GF ML LL+ + Sbjct: 1 MTNQKKLLLIDGSSVAFRAFFA--LYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E++ DYKA R K PE Q P +R A GI ++ + Sbjct: 57 --PTHILVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQFPYIREMLAARGIAYYDLAQY 114 Query: 116 EADDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE E + +T++S DKDL+QL T + + K E ++++ Sbjct: 115 EADDIIGTLAKMAENTSEDYQITVVSGDKDLIQLTDENTVVEISKKGVAEFEAFTPDYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + +K+ K Sbjct: 175 EKMGITPAQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEGIYEHIDEMKKSKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV- 288 +EN++ E A LS+ L + T PI I L+ + +L +F + F + N + Sbjct: 235 KENLINDKEQAFLSKTLATIDTQSPIEIGLDDTAFVGPDLEKLAAFYDEMGFVQFKNALG 294 Query: 289 --ATTYDCDAANIEP 301 A D D A EP Sbjct: 295 GEAMPQDFDVAYAEP 309 >gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 872 Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 166/425 (39%), Positives = 257/425 (60%), Gaps = 2/425 (0%) Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 + L++ L +L +L + L+ P+I V++ ME GI +D D E+ L Sbjct: 446 LALEMAGALSGRLAGAQLSRLMRTLEMPLIPVLADMEAAGIAVDLDAFAAFLREVQGELD 505 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 L ++Y +G +FN+ S +QL ++LF L P+G KTK GQ +TAQD+ + G +P+ Sbjct: 506 RLTRDVYKAAGGEFNIRSSQQLAELLFGTLGLPTGGKTKGGQ-TSTAQDVLEKLSGRHPV 564 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 + ILE+R+L K++STY + LP ++ R+HT ++ +T TGRL+S PNLQNIP++ Sbjct: 565 VDAILEFRKLEKLRSTYLEPLPRLVDG-AGRIHTTFNQLATATGRLSSSNPNLQNIPVRG 623 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 DLG+++R F + P +L+SADYSQ+ELR+LAH+++ L F DIH A+ ++ Sbjct: 624 DLGRRMRTCFTAAPGLRLVSADYSQVELRVLAHMSQDPTLLAAFREGADIHSRTASLLYD 683 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 V ++VS RR+AKTINF +IYG+ P +LA +LRIP +EA +I+RYF + + E+ + Sbjct: 684 VAQDQVSTDQRRNAKTINFGLIYGMGPQKLAQELRIPLTEAKAFIERYFSKLQKLREFYD 743 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 + + R+ GYV T+ GRR EI+S + +++ R AIN IQGSAADI + AM++ Sbjct: 744 EAETTARELGYVTTMAGRRRLLPEIHSENTQLKSQARRQAINTLIQGSAADIIKLAMLAA 803 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 H E L +++LQ+HDEL+ EVP + A + + M + L VPL V+ Sbjct: 804 HADPELRALNARLILQVHDELLLEVPADNAPAAGERLAAIMSGVRPGGVALDVPLAVDWG 863 Query: 968 VSNNW 972 NW Sbjct: 864 QGENW 868 Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 110/347 (31%), Positives = 168/347 (48%), Gaps = 30/347 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+DGS+FI+R FYA + R DG P NA+ +L +LL+ R ++F + D Sbjct: 14 LWLMDGSAFIFRGFYAYQSMQRS-DGFPTNALFIVTRILLRLLREERP----TNFCFVLD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++P YK R PE L+ QL ++ +A G+P + G EADD IA+ Sbjct: 69 GKGPTFRHELFPPYKMQRAVTPEPLVQQLDPIKRMVRALGLPLVVSDGCEADDCIASLAA 128 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEK-IDIEHVIKKWGIPPEKMVCLQA 184 E V I+ TDKDL Q + L+D KEEK + + + G+ P + QA Sbjct: 129 RHRSE-RPVVIVGTDKDLKQCLHDNVVLWDPAAKEEKLVTLADFTAETGLAPARWPDFQA 187 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 + GDS DNIPGIPG+G KTA + +++G+LE+I + +K R + ET L R Sbjct: 188 VIGDSSDNIPGIPGVGPKTAEKIFKDFGSLEDIRDRVGELPEKL-RAKFEPHLETMFLYR 246 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL 304 +L L TD + L L + + + L+ E +L ++ Sbjct: 247 QLTTLTTDACPEVTLPDLAVRPLDPAEAGAMLREFELRQLTRELS--------------- 291 Query: 305 DINTTENKGIAIETEIDRDTT-IKTSQFSSLSDQTSKINSEQTPQKL 350 EN + T R T+ ++ S F + +N+ + P KL Sbjct: 292 --GMIENGSV---TSAPRSTSQVQASLFGDEGRRADPVNTCKDPGKL 333 >gi|291461229|ref|ZP_06600302.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] gi|291378194|gb|EFE85712.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] Length = 514 Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 195/511 (38%), Positives = 303/511 (59%), Gaps = 16/511 (3%) Query: 469 IKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528 I Y+ L G + + M+++Y L S ++ D+ Y++ E K K++ Sbjct: 13 ISYNFKALLNLGFTFKSMYMDMMIAYHLISSQTKMDVL---LPITEYSKVEA-KDFKTTF 68 Query: 529 PIDKISDSQVQEHAIENSNV---ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 I V E A SN+ IL + + L E+L ++ + + P+I V+S ME Sbjct: 69 GKTHIETLLVDEFARYLSNIGLGILACYDEINHLLHKEELHNILIQNEMPLIPVLSLMER 128 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT 645 GI+ID K S E+ K L E+ IY+ +GE+FN++SPKQLGDILF K+ PSG KT Sbjct: 129 KGIKIDVSYFKNYSLELEKELAKTEKAIYEEAGEEFNINSPKQLGDILFVKMNLPSGKKT 188 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTG + T LE + I + +L++R+L+K+K+TY D+LPN ++ + R+HT ++ Sbjct: 189 KTG-YSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPNLVDSNS-RIHTSFNQ 246 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 T TGRL+S EPNLQNIP+KTD G KIR F++ K L+S DYSQ+ELR+L ++K Sbjct: 247 IGTATGRLSSSEPNLQNIPVKTDDGIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDE 306 Query: 766 PLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + + D+H + A IF + + + V+ + R AK INFSIIYG + F LA +L+IP Sbjct: 307 NLIKAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIP 366 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 +A++YIK+YF ++P + + ++ F ++GYV+T+FGR+ + I+S +I+ E Sbjct: 367 VKDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAE 426 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 R A+N IQG+AA++ ++ M+ V++ L+D K +LLQ+HDEL+FEV E + S+I+ Sbjct: 427 RMAVNTVIQGTAAEVLKKVMLKVYEVLKD-KDDIALLLQVHDELIFEVEENSVEKYSEIL 485 Query: 945 VHSMEKAC-LPKINLRVPLKVNIKVSNNWQE 974 M+ L +NL +NI NW E Sbjct: 486 ADIMKNTVKLEDVNLN----ININTGKNWAE 512 >gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183] gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183] Length = 906 Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 179/525 (34%), Positives = 290/525 (55%), Gaps = 11/525 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 L ++ + H K H+ K L L G+++ G D L +Y+ G+ + D+ + + Sbjct: 387 LAEWLADPHRPKAIHDAKGPMLALAARGMTLAGVTSDTALAAYLALPGQRTFDLGDLVLR 446 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 +L +E + + ID I+D + +L+L L L + Sbjct: 447 YLHKELREHAEP-GGQLTIDGIADDDAARELAVRARAVLELAEALDRDLERRGAARLLHE 505 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ V++ ME GI +D D Q+SA + E+ + G +FNL SPKQ+ Sbjct: 506 VELPLTGVLAAMERAGIAVDVDHFIQLSASLGGQAKDTEQQAHAAVGHEFNLGSPKQVQQ 565 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPN 690 +LF +L P +TKTG + T ++ L + D+P++++IL WR+++K+KS +P Sbjct: 566 VLFEELGLPKTKRTKTG-YTTDSEALNSLRAKSDHPVLEHILRWREVAKLKSIVDSLIP- 623 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISAD 749 + R+HT ++ TGRL+S +PNLQNIPI+T G++IR F+ + L++AD Sbjct: 624 -MAAEDGRIHTTFNQMVAATGRLSSTDPNLQNIPIRTAEGRQIREGFVVGEGYECLLTAD 682 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELRI+AH++ L + F + D H + A+ +FG+ E++ ++R K +N+ + Sbjct: 683 YSQIELRIMAHLSGDEALIEAFTSGADFHTITASRVFGLPPEQIDGELRARIKAMNYGLA 742 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YG+SPF LA+QL I EA ++ YF +F G+ +Y++ RQ+GY ETI GRR + Sbjct: 743 YGLSPFGLASQLGITPDEARVLMEEYFQQFGGVRDYLQGVVRRARQDGYTETILGRRRYL 802 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 ++ S R + ER A+NAPIQGSAADI + A + V ++L + LA++MLLQ+HDELV Sbjct: 803 PDLTSDNRQRREMAERMALNAPIQGSAADIIKVASLRVDRALRERGLASRMLLQVHDELV 862 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 FEV E+ +++ M A LR PL+V + WQ+ Sbjct: 863 FEVAPGELEELKELVREQMTGA----YELRAPLEVAMGTGRTWQQ 903 Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 113/332 (34%), Positives = 172/332 (51%), Gaps = 27/332 (8%) Query: 5 NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG S YRAF+A P+ + DG P NA+ GF +ML +L++ + +H AV Sbjct: 19 GRLLLLDGHSLAYRAFFALPVENFSTTDGQPTNAVYGFTSMLINVLRDEQP----THVAV 74 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E Y DYKA R K P+ Q+ L+ A IP + + G+EADDIIAT Sbjct: 75 AFDRSEPTFRHEQYADYKAGRAKAPDEFRSQVSLIFEVLDALRIPRLSVPGYEADDIIAT 134 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKM 179 A +G +++ D+D QLV+ T LY V E + D V +K+G+PPE+ Sbjct: 135 LASQASAQGMQTLVVTGDRDAFQLVNEHVTVLYPVRGVSELVRYDPAKVAEKYGVPPERY 194 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236 L AL G++ DN+PG+PG+G KTAA L +YG+L+ ++ NA ++K K RE++ + Sbjct: 195 RELAALVGETSDNLPGVPGVGPKTAAKWLTQYGDLDGLVRNADKLKGKAGAALREHLPQV 254 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT----- 291 ++++ L VP+ + L L + + + L+F L R+ T Sbjct: 255 LRNHQINK----LDCAVPLEVGPAQLRLGQWDREEIHTLFDTLQFRVLRERLYATLSAVE 310 Query: 292 ------YDCDAANIEPVVLDINTTENKGIAIE 317 + + +EP L E+ G A E Sbjct: 311 PEAEEGFAVELTRLEPGALAAWLAEHAGRAGE 342 >gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699] Length = 838 Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 199/521 (38%), Positives = 305/521 (58%), Gaps = 33/521 (6%) Query: 456 FFENEHFL-KIGHNIKYD-KLVLHRYGISMRGFE--DIMLMSYVLDSGRSSHDIASIAQK 511 F E E FL + G +D K + H+ G +R F D+ + Y+L+ QK Sbjct: 346 FKEIEEFLPEKGKIYTFDLKSLYHKVGEKLRNFSFIDLSVCEYLLNP----------LQK 395 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 Y+ K+ILK R + ++++ D + ++ IL +L E L ++YE Sbjct: 396 --DYSSKDILKKRLGVVSLEEVKD--YVHYTLDIGKEILN-------ELKKEGLENLYES 444 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ V+ +ME G+ D++ L+ E+ + +E+ I++++GEKFNL+SPKQL Sbjct: 445 IEHPLTFVLYKMEKRGVLFDKEYLENFGKELDRKSKEIEKKIFEIAGEKFNLNSPKQLSK 504 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF KLK KTK+G + T + L + + I + +LE+R+L+K+ ST+ + H Sbjct: 505 ILFEKLKLKPLKKTKSG-YSTDVETLTALALKGHKIAELLLEYRKLTKLNSTFVKGILKH 563 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 +++ RV T + T TGRL+S EPNLQN+P+ ++ +KIR A +P L+ ADYS Sbjct: 564 MDE-DGRVRTTFIQTGTATGRLSSAEPNLQNLPVSDEISKKIRYAVTAPAGYNLVWADYS 622 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELRILAH+++ L + + DIH A+ +FG++ E+V ++RR AKT+NF IIYG Sbjct: 623 QIELRILAHLSQDEKLLEAYRKGRDIHTETASYLFGISAEEVDERLRRIAKTVNFGIIYG 682 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 +SP L+ +L I EA YI RYF +FP + EYIE T + GYV+TIFGR+ E Sbjct: 683 MSPHGLSERLGISVEEAEKYIDRYFEKFPKVKEYIENTLREAYEKGYVKTIFGRKRPLPE 742 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 + S +IR+ ERAA+NA IQG+AADI + AM+ ++K LE KL M+LQ+HDE+V E Sbjct: 743 LKSSNKNIRSFGERAAVNATIQGTAADIMKLAMVKLYKKLE--KLGAYMVLQVHDEIVIE 800 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EE+ +I+ +ME + VPL V++KV +W Sbjct: 801 ALEEKTEEIMKIVKETMENV----VEFSVPLTVDVKVGKHW 837 Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 111/289 (38%), Positives = 169/289 (58%), Gaps = 9/289 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++L DG+S YRA+YA L+ G P NAI GF M KL ++ + ++ AV FD Sbjct: 6 IYLFDGTSLAYRAYYAIKDLTTSK-GFPTNAIYGFIRMFLKLYKDFK----PNYIAVAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++ +YKANR P+ QLP ++ + GI +E +GFEADDI+ T Sbjct: 61 VGKKTFRSKLLKEYKANRKPTPDSFKLQLPYIKKFLECLGITILEKEGFEADDILGTAAK 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVS---PTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 EG+ V +++ DKD+ QL+ + T ++E D+ +K+GI PE++ Sbjct: 121 KFASEGYRVFVVTPDKDMRQLIDGKISVIAINKTGQKEIYDLVSFKEKYGIEPEQIPDFF 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 L GDS+DNIPG+P IG KTA L+ E+GNLEN+ N S++ KRRE + ++ E A LS Sbjct: 181 GLVGDSVDNIPGVPSIGEKTAQKLIAEFGNLENLYKNLSKLTS-KRREVLEKFKEQAFLS 239 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 R+L ++ +VPI I LE+L +++ G L FLK LE +++ + + Sbjct: 240 RELAKIKKNVPIEISLENLKVKEPQGKCLGEFLKELEMRSIVSELKKLF 288 >gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396] gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124] gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396] gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124] Length = 879 Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 174/406 (42%), Positives = 255/406 (62%), Gaps = 9/406 (2%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ +V+++MEI GI++ L +++ E + L + IY+++GE+FN++SPKQLG Sbjct: 478 MELPLANVLAKMEIAGIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEFNINSPKQLGV 537 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF K+ P KT +TA D+ + PI+ ILE+RQ++K++STY L ++ Sbjct: 538 ILFEKMGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDY 597 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISAD 749 I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+AF+ P T+ L+S+D Sbjct: 598 I-LEDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFV-PSTEDAVLLSSD 655 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSI 808 YSQIELR+LAHI+ L F+ DIH A +FG+ E V+P RR+AK +NF I Sbjct: 656 YSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGI 715 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YGIS F L+ L I R +A +YI YF R+PGI Y++ + GYVET+F RR Sbjct: 716 VYGISDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRE 775 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 +INS ++RN ER AIN+PIQGSAADI + AMI++ K+L + TKMLLQ+HDE+ Sbjct: 776 LPDINSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVEGGYKTKMLLQVHDEI 835 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 V EVP +E+ ++ +ME A + L VPL + W E Sbjct: 836 VLEVPNDELVAMEALVKETMEAA----VELAVPLIADENDGCTWYE 877 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 115/315 (36%), Positives = 165/315 (52%), Gaps = 20/315 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M + L L+DGSS +RAF+A L + R ++GL NAI GF ML LL+ + Sbjct: 1 MTNQKKLLLIDGSSVAFRAFFA--LYNQIDRFRNNNGLHTNAIYGFHLMLDNLLERIQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E++ DYKA R K PE Q P +R A GI ++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQFPYIREMLAARGIAYYDLAQY 114 Query: 116 EADDIIATYTYIAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE E + +T++S DKDL+QL T + + K E ++++ Sbjct: 115 EADDIIGTLAKMAENTSEDYQITVVSGDKDLIQLTDVNTVVEISKKGVAEFEAFTPDYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + +K+ K Sbjct: 175 EKMGITPAQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLLEHGSLEGIYDHIDEMKKSKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV- 288 +EN++ E A LS+ L + T PI I L+ + +L +F + F + N + Sbjct: 235 KENLINDKEQAFLSKTLATIDTHSPIEIGLDDTAFTGPDLEKLAAFYDEMGFVQFKNALG 294 Query: 289 --ATTYDCDAANIEP 301 A D D EP Sbjct: 295 GEAIPQDFDVTYAEP 309 >gi|322412776|gb|EFY03684.1| DNA polymerase I [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 880 Score = 323 bits (829), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 172/421 (40%), Positives = 262/421 (62%), Gaps = 12/421 (2%) Query: 561 IVEKL-----LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615 +VEKL + +Y ++ P+ +++++MEI GI++++ L+ ++ + + +L + IYD Sbjct: 463 MVEKLADHDQIALYHEIELPLANILAKMEIEGIKVNRATLQDMAEQNKAIIEALTQEIYD 522 Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675 ++G++FN++SPKQLG ILF K++ P KT +TA D+ + PI+ IL++R Sbjct: 523 MAGQEFNINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYR 582 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 Q++K++STY L ++I ++HT Y T TGRL+S++PNLQNIP++ + G+ IR+ Sbjct: 583 QITKLQSTYVIGLQDYI-LADGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRK 641 Query: 736 AFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKV 793 AF S L+S+DYSQIELR+LAHI+ L F DIH A +FG+ E V Sbjct: 642 AFTPSQEDAVLLSSDYSQIELRLLAHISGDEHLIAAFNEGADIHTSTAMRVFGIEKAEDV 701 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 + RR+AK +NF I+YGIS F L+ L I R +A YI YF R+PGI Y+E Sbjct: 702 TANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREA 761 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GYVET+F RR +INS ++R+ ER AIN+PIQGSAADI + AMI++ +L+ Sbjct: 762 KDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDNALQA 821 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 KMLLQ+HDE+V EVP E+ +++ +ME A ++L VPL+ + +W Sbjct: 822 GGFKAKMLLQVHDEIVLEVPNTELAAVKKLVKETMEVA----VDLAVPLRADENAGQSWY 877 Query: 974 E 974 E Sbjct: 878 E 878 Score = 190 bits (482), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 119/304 (39%), Positives = 167/304 (54%), Gaps = 23/304 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + R H GL NAI GF ML +++ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFRNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K PE Q P +R A GI E++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T +AE+ F VTI+S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLADENTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K G+ P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K Sbjct: 175 EKMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHVEGFKASKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLIN 286 +EN+L + A LS+ L + T PITI L+ +I NGP + S F ++F +L Sbjct: 235 KENLLNDRDQAFLSKTLATINTTSPITIGLDDII---YNGPDVASLSKFYDEMDFVQLKK 291 Query: 287 RVAT 290 +A+ Sbjct: 292 DLAS 295 >gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243] gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243] Length = 875 Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 168/408 (41%), Positives = 249/408 (61%), Gaps = 8/408 (1%) Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 Y +D P++ V++ +E TG +D D L ++ A L L I +++GE+FNL SPK Sbjct: 473 AYFDIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIAGEEFNLDSPK 532 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QL ILF L + K + G + T A L++++ D+ + +L +R+L+KIKSTY D+ Sbjct: 533 QLAHILFEVLGLRTLRKNQRG-YSTDAAVLKELS-NDHELPALVLRYRELAKIKSTYIDA 590 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS-PPTKKLI 746 LP + RVHT ++ T TGRL+S EPNLQNIP++T+ G++IR F+ + Sbjct: 591 LP-RMRADDGRVHTSFNETVTTTGRLSSSEPNLQNIPVRTEFGRQIRECFVPLEEGHAFL 649 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 SADYSQIELR+LAH++ L F + D H A+ +FG+ +E VSP++R AK +NF Sbjct: 650 SADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVEDVSPELRSRAKAVNF 709 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YG F L+ L IP EA + I+RYF +PG+ Y+++T ++ GY ET+FGR+ Sbjct: 710 GIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYLDRTIAEAKEKGYAETMFGRK 769 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 H E+ + ++ R ER A+N P+QGSAADI + AM V + + + K+LLQ+HD Sbjct: 770 RHIPELKAANATQRGFGERTAMNHPMQGSAADIIKLAMTEVQRRIMERGFEAKLLLQVHD 829 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EL F VPE EI S I+ ME ++LRVPL V++ ++NW E Sbjct: 830 ELDFSVPEGEIEELSAIVKDVMEHI----VDLRVPLDVDVSYADNWAE 873 Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 157/287 (54%), Gaps = 15/287 (5%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI--FD 66 ++DG+S ++RA++A P DG P NA+ GF ML K + IA+ A+I FD Sbjct: 7 VIDGNSLMHRAYHAVPQTMNAPDGRPTNAVFGFVAMLLKFI------DIANPDALICAFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR E YKA RP + + L Q P+V +A +P + I+G+E DD++ T Sbjct: 61 AGRPAFRMEALEQYKAQRPPMDDDLKVQFPIVEELLEAMNVPVVRIKGWEGDDVLGTIAA 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIPPEKMVC 181 E+ G+ +++ DKD QL + T + T K+ D+ V++++G+ P++ + Sbjct: 121 RDEELGYETLLVTGDKDAYQLATDKTRIV-TTKKGITDVAIYGPAEVLERYGVRPDQFID 179 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L GDS DNIPG+PGIG KTAA LLQ YGNLE I + +K K+ +E I++ + A Sbjct: 180 FLGLKGDSSDNIPGVPGIGDKTAAKLLQTYGNLEGIYEHVDDLKGKQ-KEKIVDNKDMAY 238 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 LSR++ + D+ + LE + ++ K+++F ++RV Sbjct: 239 LSREVATIVRDLDFPLDLEACSFPSFDSDKVTEAFKSVQFNAHLSRV 285 >gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656] gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656] Length = 903 Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 186/498 (37%), Positives = 300/498 (60%), Gaps = 22/498 (4%) Query: 484 RG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQV---- 538 RG + D+M+ +Y+++ + ++A+ +L +L S+K + K+ +Q+ Sbjct: 415 RGRYFDMMVAAYLINPLVGEYPYDAVAKDYLGL----MLSSKKDYL--GKLDFTQMMKED 468 Query: 539 QEHAIENSNV-ILQLWL---LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 ++ A++ + + W +L KL +L +Y ++ P++ V+ ME GI+ D Sbjct: 469 EKKAVDCACYEVYTAWKSKPVLLQKLKEMNMLTLYRDIELPLVFVLYDMENEGIRADGIK 528 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 LK+ +++ ++ LE+ IY+ +GE+FN++SPKQLG ILF KL P+ KTKTG + T A Sbjct: 529 LKEYGDKLAVSITELEKKIYEAAGEEFNINSPKQLGVILFEKLGLPNEKKTKTG-YSTAA 587 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 LE++ + PI+ +ILE+RQL+K+KSTYAD L +I ++HT + T TGRL+ Sbjct: 588 DVLEKL-APEYPIVADILEYRQLTKLKSTYADGLSGYI-ASDGKIHTTLNQTITATGRLS 645 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S EPNLQNIPI+ +LG+ IR+ F+ + +DYSQIELR+LA ++ + + F+N Sbjct: 646 STEPNLQNIPIRIELGKLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDERMIEAFKNG 705 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIHR A+ +F ++V+ RR+AK +NF I+YGIS F L+ L I R EA YI Sbjct: 706 QDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYGISAFGLSNDLGISRKEAQGYIDS 765 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 YF ++P I E++++T ++NGY +T+FGR E+NS R ER A+N+PIQG Sbjct: 766 YFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIRPIPELNSSNFMQRQFGERVAMNSPIQG 825 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 +AADI + AMI VH L D L ++++LQ+HDEL+ E E E ++ +EK Sbjct: 826 TAADIIKIAMIRVHDRLLDEGLKSRLILQVHDELLIETKEAE----KDKVIKLLEKEMRG 881 Query: 955 KINLRVPLKVNIKVSNNW 972 ++++V ++V + +W Sbjct: 882 AVDMKVSMEVGTECGYDW 899 Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 122/372 (32%), Positives = 190/372 (51%), Gaps = 34/372 (9%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG S + RA++ P L+ +GL NA+ GF N+++K+L + + + V FD Sbjct: 5 LVLIDGHSILNRAYHGLPDLTNS-EGLHTNAVYGFLNIMFKILDEEKPD----YLTVAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+ ++ YK R + E L Q+P+++ A GI +E +G+EADDI+ T + Sbjct: 60 VHAPTFRHRMFDAYKGTRKPMDEELRQQVPMIKEMLTAMGIKIVEKEGYEADDILGTLSV 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEKMV 180 AEK G V IIS D+DL+QL + + K+ +IE+ VI+K+G+ P++ + Sbjct: 120 RAEKAGMDVAIISGDRDLLQLATDHVMVRIPKTKKTGTEIENYNTADVIEKYGVTPKEFI 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++AL GD+ DNIPG+PGIG KTA L+ +Y +E + +A +K + +NI+EY E A Sbjct: 180 DVKALQGDTSDNIPGVPGIGEKTAGALIAKYHCIEAVHEDAENVKPPRASKNIVEYWEQA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLIL----EDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 +S++L + D P+ L E K EF +++R + Sbjct: 240 LMSKELATIILDAPVDYEFSDAKLSGGVESLYTEEAFLLCKRYEFKNMLSRFNVEAPKNN 299 Query: 297 ANIEPVVL-DINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQ-KLFLER 354 A VV+ D+ T E+ E DR+ SL NSE Q LF E Sbjct: 300 AEEHFVVVRDLKTAES---VFEKAKDREVAFAVVPGESLE------NSESDGQLSLFSE- 349 Query: 355 LQKLSQYPINND 366 P++ND Sbjct: 350 -------PVSND 354 >gi|330685710|gb|EGG97349.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU121] Length = 466 Score = 323 bits (829), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 188/456 (41%), Positives = 275/456 (60%), Gaps = 20/456 (4%) Query: 522 KSRKSSIPIDKISDSQVQE--HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 K +K +P D+I + V A+ S +Q L + E LL L+ P+ ++ Sbjct: 22 KGKKHHVPEDEILNKHVASIIEAVSESKAEMQKQL---KEYNQESLL---ADLELPLAEI 75 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 +S+ME GI D L+Q+ EI + L L +NI++ +GE+FN++SPKQLG +LF L+ Sbjct: 76 LSEMEEIGIFTDVKDLQQMEKEIQEKLDVLIKNIHEAAGEEFNINSPKQLGVVLFETLEL 135 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 P KTKTG + T LEQ+ G +PII ILE+RQLSK++STY + L I+ R+ Sbjct: 136 PVIKKTKTG-YSTAVDVLEQLQ-GQHPIIDYILEYRQLSKLQSTYVEGLQKVISD-DHRI 192 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELR 756 HT ++ TGRL+S++PNLQNIPI+ + G+KIR+AF PT ++SADYSQIELR Sbjct: 193 HTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAF--KPTSSDSVILSADYSQIELR 250 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +LAHI + + + F N DIH A ++F V ++V MRR AK +NF I+YGIS + Sbjct: 251 VLAHITQDESMKEAFINGHDIHTATAMKVFDVEADEVDSLMRRQAKAVNFGIVYGISDYG 310 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ L I R +A +I Y FPG+ +Y+ + G+VET+ RR + +I S Sbjct: 311 LSQSLGITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAKAQGFVETLLHRRRYIPDITSRN 370 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 ++R+ ER A+N PIQGSAADI + AM+ +K ++ K+LLQ+HDEL+FEVP++E Sbjct: 371 FNLRSFAERTAMNTPIQGSAADIIKLAMVQFNKEVQHTDYHAKLLLQVHDELIFEVPKDE 430 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + + S+ + ME A + L VPLKV+ W Sbjct: 431 VASFSKFVEEIMESA----LKLDVPLKVDSSYGATW 462 >gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516] gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516] Length = 875 Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 179/529 (33%), Positives = 309/529 (58%), Gaps = 12/529 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIA 506 +I+ K+ FE++ K+ +IK L RYGI + ++D++++ Y+LD ++S+ + Sbjct: 351 DIVKSFKEEFESKDVNKLSFDIKPCIYHLMRYGIDISYNYDDVVIIEYLLDPSKTSYSME 410 Query: 507 SIAQKWLSYTRK---EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 K + Y K +I +S I + + ++ + ++ +L+ + ++ E Sbjct: 411 RSDPKVIGYDFKSLEDITGKGRSKKTILESDEKEIDNYIVKYMMFTNKLYEKI-SEIEEE 469 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 ++H+Y ++ P+I V+ ME TG+ + ++ L ++ + S+E+++ +L G+K N+ Sbjct: 470 DMMHLYRDVEIPLIKVLCDMEFTGVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKINI 529 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 +S KQL ++LF L+ P K KTG +T Q++ + G + II IL +R ++K+K+T Sbjct: 530 NSSKQLAEVLFEDLELPVIKKNKTGP--STDQEVLEALSGRHEIIDYILRYRTIAKLKTT 587 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y D + + I K ++HT + TGR++S PNLQNIPI+T+ G+ IR+AF+ Sbjct: 588 YIDGMVDLI-KEDGKIHTTFQQTIAQTGRISSTNPNLQNIPIRTEEGRLIRKAFVPSQGS 646 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 L+ ADYSQIELR+LA +A + F+N DIHR A+E+F V+ +KV+ R +AK Sbjct: 647 VLLDADYSQIELRVLADLANDEVMIDAFKNGADIHRKTASEVFKVDFDKVTSLQRSNAKA 706 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGI + L+ L I R EA +YI+ Y + I +Y+E ++ GYVETI Sbjct: 707 VNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKEIKQYMEDIVAIGKEKGYVETIM 766 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + E+ S ++R+ ER A+N PIQGSAADI + AM+ + L + L K++LQ Sbjct: 767 KRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEENLKAKLILQ 826 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+ + PE+E +I+ M A ++L+V +K+++ ++ W Sbjct: 827 VHDELIVDCPEDEREKVLEIMKDVMTHA----VDLKVDMKIDVNSADTW 871 Score = 184 bits (468), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 166/290 (57%), Gaps = 16/290 (5%) Query: 8 FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 ++DGSS ++R FYA L+ K DG+ N + GF NM + ++ + + V FD Sbjct: 6 LIIDGSSLLFRGFYAIRDLTTK-DGIHTNGVFGFMNMYYSVMDKLNPDLVV----VCFDR 60 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 TFR+E Y +YK NR + PE L+ Q +++ QA G+ I+++G+EADDI T Sbjct: 61 KEPTFRHEKYSEYKGNRQETPEELIVQFDMLKELLQAMGVSYIDLKGYEADDIAGTLAKQ 120 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVCLQ 183 A + + V +++ DKD +QL+ T + T + E KI D++ + +++GI P++M+ L+ Sbjct: 121 ASSKNYDVYLLTGDKDYLQLIDDNTKVVLTKRGITETKIYDVDALKEEYGITPQQMIDLK 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 L GD DNIPGI G+G KTA +Q+YG++E + + I KK ++ +++ + A LS Sbjct: 181 GLMGDKSDNIPGIDGVGEKTALKYIQKYGSIEGLYEHVDEISGKKTKQKVIDGEKIAYLS 240 Query: 244 RKLVMLRTDVPITIPLEHLILEDC-----NGPRLISFLKALEFTKLINRV 288 R+L + TDVP L +++DC + LI L LEF I ++ Sbjct: 241 RELGTINTDVP--KDLMGFVIDDCLIKEADNEHLIEVLTKLEFNSFIKKL 288 >gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806] Length = 956 Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 203/561 (36%), Positives = 321/561 (57%), Gaps = 41/561 (7%) Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG 499 G N + +L L+ ++++ K+ N K+D V + GI+++G D M+ SYVL Sbjct: 408 GDNLNLEIVLEKLRPILASDNYPKVFQNAKFDIDVFYHQGITVKGLVFDTMVASYVLHP- 466 Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK-ISDSQVQEHAIENSNVILQLWLLLRP 558 +H++ + ++L L + IP K I+D + A + LLR Sbjct: 467 ELTHNLEDLCDRYLDGITS--LSYKSLGIPGGKTIADLDITTTA-NYCGLDAYATYLLRE 523 Query: 559 KLIVE-----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613 KL E L ++ ++ P++ V+ QME GI+I+ + LK +S ++ ++L +E+ Sbjct: 524 KLQAELTKIPSLYQLFSEVESPLVMVLWQMENYGIKININYLKNLSQQLERDLADIEKKA 583 Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNI 671 Y+ GE FNL SPKQL +ILF +L KTKTG + T LE++ GD+P+I I Sbjct: 584 YESIGETFNLGSPKQLSEILFDRLALNRKKSRKTKTG-YSTDQSVLEKLQ-GDHPLIDYI 641 Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731 LE R LSK+KSTY D+LP +T RVHT ++ T TGRL+S PNLQNIP++++ + Sbjct: 642 LEHRTLSKLKSTYVDALPKLAEPKTARVHTDFNQTITSTGRLSSSNPNLQNIPVRSEFSR 701 Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791 +IR+AFI L+SADYSQIELRILAH+++ L + + ++ D+H++ A +F + Sbjct: 702 RIRQAFIPEDGYLLVSADYSQIELRILAHLSQEPVLLEAYRSNQDVHKVTAQLLF--DKG 759 Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851 +++P+ R KTINF +IYG+ + A + ++ + +I++Y R+ + +Y+E +K Sbjct: 760 EITPEERSLGKTINFGVIYGMGAQKFARESKLTVEQGRKFIEKYHQRYAQVFQYLENSKK 819 Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNI-------------NE-----RAAINAPIQ 893 GYVETI GRR +++ N +R + NE R+A NAPIQ Sbjct: 820 QAIAQGYVETILGRRRYFNFDNPLLKRLRGLSLHDIDLDSLKLNNEEAQLLRSAANAPIQ 879 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 GS+ADI + AM+ + + L++++ ++LLQ+HDELV EVP EE + I +ME+A Sbjct: 880 GSSADIIKVAMVKLAEVLQNYR--ARLLLQVHDELVLEVPREEWPSLESKIKTTMEEA-- 935 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 ++L VPL V IK +NW E Sbjct: 936 --VSLTVPLLVEIKAGDNWME 954 Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 26/305 (8%) Query: 3 KENHLF-LVDGSSFIYRAFYA------TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 ++N LF L+DG S +RA+YA PL R G+P + GF N L +LL+ + Sbjct: 5 EQNKLFILIDGHSLAFRAYYAFAKSRSGPL--RTSTGIPTSVCFGFLNSLLQLLETQK-- 60 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 ++ AV FD +FR+E +YKANR + PE P L ++ A IP + G+ Sbjct: 61 --PTYLAVAFDLAVPSFRHEADVNYKANRQETPEEFRPDLTNLQSLLAAMNIPIVTSPGY 118 Query: 116 EADDIIATYTYIAEKEGFAVTIISTDKDLMQLVS---PTTCLY---DTVKE------EKI 163 EADD++ T A G+ V I++ D+DL QLV TT LY + VK + Sbjct: 119 EADDVLGTLAKQAGDNGYTVKILTGDRDLFQLVDEEKKTTVLYLDINAVKSTSGQGYTEF 178 Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223 + + V +K G+ P+++V +AL GD DNIPG+ GIG KTA LL++Y NL++I N Sbjct: 179 NSQAVTEKLGVTPKQVVDFKALCGDKSDNIPGVRGIGEKTAIDLLKKYDNLDDIYTNLES 238 Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283 IK + + +LE A SR L + D P+++ + L + + + L+ LE K Sbjct: 239 IKGMVKTK-LLEGKPAAESSRYLAKISLDAPVSLEEDKFRLRGFDRRLVKALLERLELKK 297 Query: 284 LINRV 288 ++ ++ Sbjct: 298 ILQKL 302 >gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC 33030] gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC 33030] Length = 887 Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 182/516 (35%), Positives = 299/516 (57%), Gaps = 24/516 (4%) Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 H+ K +L GI++RG D + +Y+L G+ ++D+ + Q+ L R+ Sbjct: 385 HSAKETFHMLRGRGITLRGIAHDTAIAAYLLRPGQRTYDLGDVYQRHLQ---------RQ 435 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 + D++S ++++ IL+L L L +Y L+ P++ ++++ME Sbjct: 436 LTTGSDQLSLLDEDTTLVDSAAAILELAEKLTEDLRAINSYELYADLELPLVTILAEMED 495 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAK 644 TGI +D D+L++ EI++ + E+ L E NLSSPKQL +LF KL+ P K Sbjct: 496 TGIAVDMDVLEEQLKEIAQKVTDAEDTARSLVDEPDLNLSSPKQLSVVLFDKLELPKTKK 555 Query: 645 TKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 TKTG + T A+++E + + +P + +L R+ K+KST + L ++ R+HT + Sbjct: 556 TKTG-YSTAAKEIETLAAKNPHPFLDQLLAHREWQKLKSTI-EGLIKTVHD-DGRIHTTF 612 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIA 762 + TGRL+S EPNLQNIP++T+ G++IR AF + + L++ADYSQIE+R++AH++ Sbjct: 613 NQTVASTGRLSSTEPNLQNIPVRTEAGRRIRSAFTVGDGYECLLTADYSQIEMRVMAHLS 672 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L + ++ D+H V + +F V I+ V+P++RR K +++ ++YG+S + L+ QL Sbjct: 673 EDPGLIEAYKEGEDLHNFVGSRVFDVPIDDVTPELRRRVKAMSYGLVYGLSAYGLSNQLG 732 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IP EA ++ YF RF G+ Y+++ R++GY T+FGRR + E+ S R Sbjct: 733 IPAGEAKKIMESYFQRFGGVKRYLDEVVEQARRDGYTSTVFGRRRYLPELTSDNRVAREN 792 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSL----EDHKLATKMLLQIHDELVFEVPEEEIT 938 ERAA+NAPIQG+AADI + AMI V +L D +++LLQ+HDELV E+ E+ Sbjct: 793 AERAALNAPIQGTAADIIKVAMIRVDAALNDASRDQPFQSRVLLQVHDELVVEIAPGELE 852 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I+ M++A I LRVPL+V+ NW E Sbjct: 853 QVQAIVEEEMDRA----ITLRVPLEVSAGTGTNWDE 884 Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 106/301 (35%), Positives = 153/301 (50%), Gaps = 12/301 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P + G NA+ GF +M +L E +H AV F Sbjct: 8 LLLIDGHSMAFRAFYALPAENFSTSGGQNTNAVYGFLSMFANIL----SEEQPTHAAVAF 63 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E +P+YKA R PE Q+P+++ + GI + +EADDI+AT T Sbjct: 64 DVGRKTFRTEKFPEYKAQREAAPEEFKGQVPIIQDVLGSLGIVTLTKDNYEADDILATLT 123 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEE---KIDIEHVIKKWGIPPEKMVC 181 A+ E + V I++ D+D +QLV+ T LY T + E V K+G+ P + Sbjct: 124 TQAQDE-YEVVIVTGDRDYIQLVNDDVTVLYPTRGVSTLTRFTPEEVENKYGLTPAQYPD 182 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+P IPG+G KTA + E G+LE ++ NA IK K + E E + Sbjct: 183 FAALRGDPSDNLPNIPGVGEKTATKWIVENGDLEALIANADSIKGKA-GDAFRERIEQVK 241 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAANIE 300 L+R+L + TD+ + + + L L+ + + LEF L RV D + E Sbjct: 242 LNRELTQMVTDLVLPVGPDDLELKPADVGAVAKDFDDLEFGVNLRERVLAAVPTDGSAPE 301 Query: 301 P 301 P Sbjct: 302 P 302 >gi|258406522|ref|YP_003199264.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692] gi|257798749|gb|ACV69686.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692] Length = 845 Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 178/480 (37%), Positives = 277/480 (57%), Gaps = 16/480 (3%) Query: 505 IASIAQKWLSYTR-------KEILKSRKSSIPIDKISD---SQVQEHAIENSNVILQLWL 554 +A A + L Y R +L + S DKI +Q++ H N+ I++ Sbjct: 370 VADSAWEGLPYARCFDLSLGAYLLDPEQRSYSWDKIRQRHQNQLETHPDNNALSIMETGR 429 Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614 +LR +L +LL + + ++ P++ V+ +ME G+ ID + ++ E+ + L L IY Sbjct: 430 ILRRELANSELLSLMQDIELPLVGVLVRMEKRGLAIDLEAFRRFLDEVQEELDGLTHEIY 489 Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW 674 DL+G++FNL S +Q+ +LF L+ P+G KT G T++Q LE + +PII IL + Sbjct: 490 DLAGQEFNLRSSQQMAQVLFGDLELPTGRKTPGGVPSTSSQVLEGLR-NVHPIIPKILRF 548 Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734 R L K++STY + LP ++ T R+HT ++ +T TGRL+S PNLQNIPI+ + G ++R Sbjct: 549 RTLEKLRSTYLEPLPQKVDD-TSRLHTHFNQLATATGRLSSSGPNLQNIPIRGEFGPRMR 607 Query: 735 RAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794 + F++P +L++ADYSQIELR+LAH+++ L + F DIH AA I + E V Sbjct: 608 QCFVAPEGSRLVAADYSQIELRVLAHLSQDPTLLEAFTQGEDIHSRTAAVIMDIADEHVD 667 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 + RR AKTINF ++YG+ P +L+ +L I +EA +I+RYF R G+ + E+ ++ + Sbjct: 668 SEARRQAKTINFGLLYGMGPQKLSRELGISLNEAKTFIQRYFDRLQGVSAFYERIEDAAK 727 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 Q+GYV T GRR +INS +++ R A+N +QGSAADI + AMI E Sbjct: 728 QHGYVTTWAGRRRLLPDINSRNANLAQQARRMAVNTVVQGSAADIIKMAMIEADGDTELA 787 Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ LQ+HDEL+ EVP E TA + + M ++ VPL V+ V NW E Sbjct: 788 DAGARLTLQVHDELLLEVPREAAETAGKRLAAIMASVA----DMDVPLAVDWGVGTNWAE 843 Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 101/281 (35%), Positives = 156/281 (55%), Gaps = 9/281 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+DGS+++Y+AFYA P L R DG P NA+ +L +LL +E + A D Sbjct: 15 LYLIDGSAYLYKAFYAYPDLQRS-DGFPTNAL----YILTRLLLKLLQEEQPVYAAFFLD 69 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E+ P YK +RP++PE L Q+ ++ A G+P +G EADD+IA + Sbjct: 70 GKGPTFRHELLPSYKGHRPRMPEDLAAQIGPLKTLLDALGLPNEVPEGLEADDMIACLSR 129 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEK-IDIEHVIKKWGIPPEKMVCLQA 184 ++ + II DKDL Q ++P C++D + K+EK + + K++G P QA Sbjct: 130 RF-RDQRPIVIIGGDKDLNQCLAPQVCVWDPSGKQEKLVTADSFAKQFGFAPTIWPDYQA 188 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS DNIPG+PG+G KTA L+ + LE + N R+ K+ +E ++ + + R Sbjct: 189 LVGDSSDNIPGVPGVGPKTAEKWLKRFPGLETLRDNRERLSVKE-QEKLVPHLDDIFTYR 247 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 +L LRTD L+ ++ + L SFL+ EF L+ Sbjct: 248 QLTRLRTDCCAERDLDGFAVQGQDTGALRSFLQEYEFRSLL 288 >gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 893 Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 169/415 (40%), Positives = 257/415 (61%), Gaps = 11/415 (2%) Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 KL +Y ++ P++ +++ ME TG+ +++ L + A ++ + +E++IY L+G +FN+ Sbjct: 484 KLTKLYGEIELPLVPILAAMERTGVAVNRAALVRALAAANERIAEIEQDIYALAGTEFNI 543 Query: 624 SSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 SSPKQLG++LF +L P KTKTG + T A+ LE++ +P++ +L +R SKI+ Sbjct: 544 SSPKQLGEVLFDRLGLTSPKMKKTKTG-YSTNAEVLEEMRAA-HPVVDRVLTYRMWSKIR 601 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 STY + + I T RVHT ++ T TGRL+S +PNLQNIP++T+ G+ +R A P Sbjct: 602 STYLEGIGALIRPDTGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTEEGRAVR-ALFEPG 660 Query: 742 TK--KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 L+SADYSQIELRILAH++ L F DIH A+E+FGV + +V+ RR Sbjct: 661 EGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPLAEVTSAQRR 720 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK +NF I+YG+S + L+ L IPR EAA YI+RYF R+ G+ ++++ NG+V Sbjct: 721 SAKAVNFGIVYGLSDYGLSQDLGIPRKEAAGYIERYFERYHGVRAFLDRVVADAHTNGFV 780 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 T++GRR INS R+ ER A+N PIQG+AAD+ + AMI +L + ++ Sbjct: 781 TTLYGRRRALPAINSRNFMQRSNAERMAMNTPIQGTAADLIKIAMIRADAALRAAGVKSR 840 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +LLQ+HDELV EV +EI ++++ +M A L VPL V++ NW E Sbjct: 841 ILLQVHDELVLEVVNDEIAQVTELLTAAMSGAA----QLAVPLAVDVHTGKNWAE 891 Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 100/250 (40%), Positives = 143/250 (57%), Gaps = 9/250 (3%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++DGSS +RAFYA L H G+ NAI GF ML KLL KE + + FD Sbjct: 7 VIDGSSLFFRAFYALQLPPNAH-GVHTNAIHGFAMMLVKLL----KEHAPAQIVIAFDKS 61 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR +YPDYK R K PE L+ Q+PL++ GIP +E+ +EADDII T A Sbjct: 62 RTTFRTALYPDYKGTRDKTPEELIEQIPLLKELAACLGIPFVEMDDYEADDIIGTLGTQA 121 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCLQA 184 G A +++ D+D +QL+ P + T K + D +++G P +++ L+ Sbjct: 122 AAAGAAAIVVTGDRDALQLIRPGLDVLLTKKGISDTHRYDTAVFEEEYGFAPIRLIDLKG 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS DNIPG+PGIG KTA LL YG +E++L +A + KK +++ Y + A LS+ Sbjct: 182 LMGDSSDNIPGVPGIGPKTATKLLLSYGTIESVLDHAEEVAGKKLSASLIAYRDQALLSK 241 Query: 245 KLVMLRTDVP 254 +L ++ DVP Sbjct: 242 ELATIKCDVP 251 >gi|317011604|gb|ADU85351.1| DNA polymerase I [Helicobacter pylori SouthAfrica7] Length = 833 Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 266/925 (28%), Positives = 428/925 (46%), Gaps = 129/925 (13%) Query: 71 TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130 T R E +YK NR P+ +L Q+P+ Q G +E+ GFEADD+IA+ +A Sbjct: 14 TKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVSGFEADDVIAS---LATL 70 Query: 131 EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSI 190 + I S DKD QL+S L+D E + ++K+GI P + Q + GDS Sbjct: 71 SPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLTKDCVEKYGILPSQFTDYQGIVGDSS 128 Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENI---LINASRIKQKKRRENILEYAETARLSRKLV 247 DN GI GIG K A LLQ+ G+LE I L A + K + ++ E+A LS++L Sbjct: 129 DNYKGIKGIGSKNAKELLQQLGSLEKIYNHLDLAKNLLSPKMYQALIHDKESAFLSKELA 188 Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDIN 307 L + ++ C P Sbjct: 189 TLEREC-----IQEFDFLSCAFP------------------------------------- 206 Query: 308 TTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDS 367 +EN + I+ E+ I T + + E P L L+ L P ++++ Sbjct: 207 -SENPLLKIKDELKEYGFISTLR-----------DLENAPTTLILDNAPVLDSMPPSDNA 254 Query: 368 YTK-----IVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSF 422 TK + NT + +++KLE + F + F+ + +A++ L Q Sbjct: 255 PTKSSMIVLENTASLSMFLEKLENPNARVFVRLV-----FNKEKEMLALAFLLQDQGYFL 309 Query: 423 KVE-TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIK-YDKLVLHRYG 480 +E +F S+ Q++ + +H IGH++K + +Y Sbjct: 310 PLEEALFSPFSLEFLQNAFSQML---------------QHARIIGHDLKPLLSFLKAKYQ 354 Query: 481 ISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKS--RKSSIPIDKISDS 536 +S+ +D +++++ + + D E+LK ++ I +KI D Sbjct: 355 VSLENIRIQDTQILAFLKNPEKVGFD--------------EVLKEYLQEDLILHEKIKDF 400 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEK------LLHVYERLDKPMIDVVSQMEITGIQI 590 + + A + + L+L L R EK LL + ++ P + V+ ME G +I Sbjct: 401 KTKNKAEQLERLNLELNALKRLCEYFEKGGLEENLLSLARGIEMPFMKVLINMEFQGFKI 460 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D K++ E L LE I DL GE FNL+SPKQLG++L+ KL P K Sbjct: 461 DAPYFKRLEQEFKDELKVLERQILDLIGEDFNLNSPKQLGEVLYEKLNLP-----KNKSH 515 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T + L +I +P I ILE+R+L+K+ +TY L + + ++HT + T T Sbjct: 516 STDEKSLLKI-MDKHPSISLILEYRELNKLSNTYTTPLL-RLKDKDDKIHTTFIQTGTAT 573 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKITPLYQ 769 GRL+S PNLQNIP+++ G IR+ FIS + L+ DYSQIELR+LAH ++ L + Sbjct: 574 GRLSSHSPNLQNIPVRSSKGLLIRKGFISSSKEYCLLGVDYSQIELRLLAHFSQDKDLME 633 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIH + +FG E ++ + R AK+INF ++YG+ +L+ L IP SEA Sbjct: 634 AFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLSEAK 690 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 YI+ YF RFP I +Y+ + + + + T+ GR +D N ++ R +N Sbjct: 691 SYIEAYFKRFPSIKDYLNRMREEILKTSKAFTLLGRYRVFD-FNGVNDYVKGNYLREGVN 749 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 A QGSA+D+ + M+ V + ++ + ++LLQ+HDEL+FE+ E+ Q I + Sbjct: 750 AIFQGSASDLLKLGMLKVSERFKNDS-SVRLLLQVHDELIFEIEEKNALKLQQEIQGILN 808 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 LRVPL+ + ++ W E Sbjct: 809 HEVYA---LRVPLETSAFIAKRWNE 830 >gi|266624221|ref|ZP_06117156.1| DNA polymerase I [Clostridium hathewayi DSM 13479] gi|288863943|gb|EFC96241.1| DNA polymerase I [Clostridium hathewayi DSM 13479] Length = 598 Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 159/409 (38%), Positives = 263/409 (64%), Gaps = 7/409 (1%) Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 ++ ++ ++ P+I + ME GI+ ++ LK+ + + LE+ IY+ +GE FN+ Sbjct: 193 EMYSLFTDIEMPLIYSLFHMEQVGIKAERVRLKEYGDRLKVQIAVLEQKIYEETGETFNI 252 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 +SPKQLG++LF +K P+G KTK+G + T A L+++ D P+++ IL++RQL+K+ ST Sbjct: 253 NSPKQLGEVLFDHMKLPNGKKTKSG-YSTAADVLDKL-APDYPVVQMILDYRQLTKLNST 310 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 YA+ L +I +R+H ++ T TGR++S EPNLQNIP++ +LG++IR+ F+ Sbjct: 311 YAEGLAVYIGP-DERIHGTFNQTITATGRISSTEPNLQNIPVRMELGREIRKIFVPEDGY 369 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 I ADYSQIELR+LAH++ L + ++ DIH + A+E+F +++V+P RR+AK Sbjct: 370 VFIDADYSQIELRVLAHMSGDERLIGAYRHAEDIHAITASEVFHTPLDEVTPLQRRNAKA 429 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YGIS F L+ L I R EA +YI +YF +PG+ E++++ ++ GY ++F Sbjct: 430 VNFGIVYGISSFGLSEGLSISRKEATEYINKYFETYPGVKEFLDRLVADAKETGYAVSMF 489 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 GRR E+ S R+ ER A+N+PIQG+AADI + AMI V ++L+ L ++++LQ Sbjct: 490 GRRRPVPELKSANFMQRSFGERVAMNSPIQGTAADIMKIAMIRVDRALKAKGLKSRIVLQ 549 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDEL+ E ++E+ ++V M+ A +L V L+V V ++W Sbjct: 550 VHDELLIETRKDEVEAVKALLVDEMKHAA----DLSVSLEVEANVGDSW 594 >gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12] gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12] gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12] Length = 894 Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 188/504 (37%), Positives = 298/504 (59%), Gaps = 16/504 (3%) Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD 535 L++ G S M+++Y L S ++ D I Q +L K+I + K+ K+ Sbjct: 400 LYKLGFSFSKPVYDMMIAYHLVSSQTKEDYTLIGQYYL----KKIAEDEKTVFAKQKLES 455 Query: 536 SQVQEHA---IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + + + + V+ +L + ++L V + P+I V++ ME GI+ID+ Sbjct: 456 LSAEVYGDFLLNRAGVLYSCLDILEEDVKEKELEAVLWETELPLIPVLADMERIGIKIDR 515 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 + S E+++ L LE+ I++ +GE+FNL+SPKQLG+ILF KL P+G KTKTG + T Sbjct: 516 KYFEAYSLELTEKLALLEKAIWEEAGEEFNLNSPKQLGEILFLKLNLPTGKKTKTG-FST 574 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 + LE ++ I N+LE+R+L+K+K+TY D +P + R+HT Y T+TGR Sbjct: 575 DVEVLEHLSSQGFQIASNLLEYRKLAKLKNTYVDPIPK-MTGEGDRIHTCYHQIGTVTGR 633 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S +PNLQNIP+KT+ G +IR+ FI+ KL+S DYSQ+ELR+LA ++K L + ++ Sbjct: 634 LSSSDPNLQNIPVKTEEGIRIRQGFIAREGWKLLSIDYSQVELRVLASLSKDENLLKAYQ 693 Query: 773 NSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 D+H + A IF + E+VS + R AK INFSIIYG +PF LA +L I +A +Y Sbjct: 694 EKQDLHSVTAKRIFELQEDEEVSREQRIMAKIINFSIIYGKTPFGLAKELGISVKDAGEY 753 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 IKRYF ++P + ++ + F ++GYVET FGRR D I+S +++ ER A+N Sbjct: 754 IKRYFAQYPRVAQFERQVITFAEEHGYVETYFGRRRIIDGIHSKNKMVKSQAERMAVNTV 813 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +QG+AA+I ++ MI ++ L K +LLQ+HDEL+FE+ E ++ + ++ M + Sbjct: 814 VQGTAAEILKKVMIKIYSWL-SQKTDIHLLLQVHDELIFEIQEGKLQEYEENLIRFMRET 872 Query: 952 CLPKINL-RVPLKVNIKVSNNWQE 974 I L V L+VN + + W E Sbjct: 873 ----IQLEEVELEVNTNIGDTWAE 892 Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 149/288 (51%), Gaps = 11/288 (3%) Query: 8 FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 L+D S+ +YRA+YA + K +P A+ GF L++LL+ E +A+ F + + Sbjct: 5 LLLDVSAMMYRAYYANMNMRTKE--MPTGAVYGFLLSLFQLLKEYESEYMAAAFDIKRSH 62 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 R E+Y +YK+NR PE L+ Q+P + AFGI I+I G+EADDI+ + + Sbjct: 63 LK---RTELYAEYKSNRDTTPEDLVKQIPYIEAILDAFGIQRIKIDGYEADDILGSLSTK 119 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 K+G VTI++ DKD+ QL+ T +Y KE E V + PEK+ L L G Sbjct: 120 LSKKGIPVTIVTGDKDISQLLDENTEIYLLGKEVLKTREDVKNYIDVYPEKIPDLFGLIG 179 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEYAETARL 242 DS D IPG+ IG K A +L++YGNLE I N ++ + K + + E E A L Sbjct: 180 DSSDCIPGVRKIGPKKAVPMLEKYGNLEGIYENIDKLSELPGVGKTLIQIMKEDKELAFL 239 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 SR L + ++ LE L E L + LEF + R+ + Sbjct: 240 SRSLAKIERNLDFPFSLEELQFEKKE-EALREIFQKLEFKSFLKRLGS 286 >gi|160934851|ref|ZP_02082237.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753] gi|156866304|gb|EDO59676.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753] Length = 857 Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 176/506 (34%), Positives = 289/506 (57%), Gaps = 26/506 (5%) Query: 467 HNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS 526 HN K L R G R D ML +Y+L+ S Y+ K + + + Sbjct: 373 HNSKPLFAWLDRMGGEARVSYDAMLAAYLLNPNASD------------YSLKRLQEEAGT 420 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 + P +++ + V+ ++ L+ + E ++ P+ V+++ME Sbjct: 421 AAP-------KLENETAWQAAVLPRVKNWQAASLLANGQRKLLEEMEIPLAQVLARMENI 473 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G +D + ++ + + +L++ IY+ G +FN++SPKQLGD LF KL PSG KTK Sbjct: 474 GFLVDGESIRVYGERLETEIEALQKQIYEEVGYEFNINSPKQLGDALFVKLGLPSGKKTK 533 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 TG + T A+ LE++ D+P ++ +L +R L+K+KSTY + + I R+H+ ++ Sbjct: 534 TG-YSTNAEILEKLRY-DHPAVELVLHYRTLTKLKSTYCEGMLKVIGP-DGRIHSNFNQT 590 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 T TGR++S EPNLQNIP++T+LG+++R+ F++ L+ ADYSQIELR+LAHIA Sbjct: 591 ETRTGRISSTEPNLQNIPVRTELGRELRKFFLAKEGWVLVDADYSQIELRVLAHIAHDEN 650 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 + + F++ DIH + A+++FG+ E V+P MR AK +NF I+YGI F L+ + + R Sbjct: 651 MIKAFQDKEDIHTITASQVFGMPPEMVTPLMRSRAKAVNFGIVYGIGAFSLSKDINVSRK 710 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA YI Y + G+ Y+++ +++GYVET+F RR + E+ + ++R ER Sbjct: 711 EAQRYIDDYLTLYSGVDRYMKEVVEKAKEDGYVETLFHRRRYLPELTASNFNLRAFGERV 770 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVH 946 A N PIQG+AADI + AM+ V + L+ + +++LQ+HDEL+ E PE+E A++I+ Sbjct: 771 ARNMPIQGTAADIIKIAMVRVDRRLKRENMRARLILQVHDELIVEAPEDEAEQAARILTE 830 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972 ME A ++L VP+ V W Sbjct: 831 EMEGA----VSLTVPMVAEASVGKTW 852 Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 109/311 (35%), Positives = 165/311 (53%), Gaps = 32/311 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DG+S + RAFY +L+ K +GL N I GF ML +L R E + AV FD Sbjct: 3 LLILDGNSILNRAFYGIKVLTTK-EGLYTNGIYGFLTMLQRL----RDEVDPNAVAVAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++ Y YKANR +P L QLP+++ A G +E GFEADDI+ T Sbjct: 58 RKEPTFRHKAYDGYKANRRGMPPELAQQLPILKELLTALGYRLVECPGFEADDILGTLAA 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPT--------------TCLYDTVKEEKIDIEHVIKKW 172 AE+ G I + D+D +QLVSP LYD K +++ + Sbjct: 118 QAERTGNDCVIATGDRDSLQLVSPAVTVRLAATKMGRPEVTLYDEAK--------IMEVY 169 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-RE 231 G+ P++++ ++A+ GDS D IPG+ GIG K AA L+Q Y +++ + + ++ K+ R Sbjct: 170 GVTPKELIEIKAIQGDSSDCIPGVKGIGQKGAAELIQRYHSVQYLYDHIDELEIKEGLRT 229 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 + E+ARLSR L +RTD P+ + LE L + + + + LEF LI+++ Sbjct: 230 KLKAGEESARLSRMLGTIRTDAPVDLNLEDYRLGEGDRKEALRLMAKLEFFSLIDKMGLR 289 Query: 292 YDCDAANIEPV 302 + D EPV Sbjct: 290 REGD----EPV 296 >gi|160892692|ref|ZP_02073482.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50] gi|156865733|gb|EDO59164.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50] Length = 878 Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 182/492 (36%), Positives = 284/492 (57%), Gaps = 16/492 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 DI + +Y+L+ + +IA+ +L T L S K + D+++ Sbjct: 396 DIGVAAYLLNPMEDVYSYDAIARDYLGAT----LPSEKELVGKDELNLFSFTNETFRKLF 451 Query: 548 VILQLWLLLRPKLIVEKL-----LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 L L L++E+L +Y ++ P + + ME GI++D+ L S ++ Sbjct: 452 AYKALIPYLAGDLLMERLEKQEMFTLYNEIEMPTVYTLYDMEHRGIRVDRKALDDYSVKL 511 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L I +G++FN++SPKQLG ILF + G KTKTG + T+ LE+I Sbjct: 512 QSRIDELHTEIIGYAGKEFNINSPKQLGVILFEDMGLSGGKKTKTG-YSTSVDVLEKIK- 569 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D+PII ILE+RQL+K+ STYA L +I++ R+H ++ T TGR++S +PNLQN Sbjct: 570 NDHPIIPAILEYRQLTKLNSTYAQGLTAYISE-DGRIHGTFNQTITATGRISSTDPNLQN 628 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP+K +LG+ IR+AFI + ADYSQIELR+LAH+++ + F N +DIH A Sbjct: 629 IPMKLELGRLIRKAFIPEDGYVFVDADYSQIELRVLAHLSEDQVMQNAFLNHVDIHATTA 688 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +E+F V I++V+ RR+AK +NF I+YGIS F L+ L I R EAADYI++YF + I Sbjct: 689 SEVFDVPIDQVTSLQRRNAKAVNFGIVYGISAFGLSEDLGISRKEAADYIEKYFATYKNI 748 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ + +G V T+FGR E+ S R+ ER A+N+PIQG+AADI + Sbjct: 749 KSFLDRQVEEAKADGVVRTMFGRIRPVPELRSSNFMTRSFGERVAMNSPIQGTAADIIKI 808 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AM V+ L+ L ++++LQIHDEL+ E ++E+ +I MEK + ++ VPL Sbjct: 809 AMFRVNMELKKRGLKSRLILQIHDELLVETAKDEVDIVKEI----MEKEMMGAADMAVPL 864 Query: 963 KVNIKVSNNWQE 974 ++ I +NW + Sbjct: 865 EIGISEGDNWYD 876 Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 110/312 (35%), Positives = 178/312 (57%), Gaps = 13/312 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N + L+DG S + RAFY P L+ ++GL NA+ GF N+++K++ + + H V Sbjct: 2 NKILLIDGHSILNRAFYGLPDLT-NYEGLHTNAVLGFLNIIFKIMDEEKPD----HMCVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y YK R +PE L Q+PL++ A + +E G+EADDII T Sbjct: 57 FDVHEPTFRHLKYSAYKGTRKPMPEELREQVPLMKEVLTAMHVTIVEKGGYEADDIIGTI 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCL-YDTVKEEKIDIEH-----VIKKWGIPPEK 178 + +AE++G+A I+S D+DL+QL + T + K IE+ V++ +G+ P + Sbjct: 117 SRMAERDGYATVIVSGDRDLLQLATDTILVRIPKTKATGTTIENYYAKDVVEAYGVTPVQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + ++ L GD+ DNIPG+PGIG KTAA L+ EYG++ENIL + +K + ++N+ E + Sbjct: 177 FIDMKGLMGDTSDNIPGVPGIGEKTAAKLMIEYGSMENILDHLDTVKPPRVQKNLTENMD 236 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A +S+ L ++ D + + L+ + +E K L F L+ + T +AA Sbjct: 237 LAVMSKDLATIKLDCKLDVSLDEMTIESLFNEDSYKIFKRLGFNSLLKKFDTV--TEAAE 294 Query: 299 IEPVVLDINTTE 310 I+PV+ + TTE Sbjct: 295 IDPVITLLETTE 306 >gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] Length = 908 Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 195/523 (37%), Positives = 303/523 (57%), Gaps = 12/523 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKW 512 +K+FF N I +N K L G+ ++ + ++++Y L S ++ + I + Sbjct: 395 IKEFFRNSDSKFITYNFK----PLLNEGVEIKNMDVDLMIAYHLISSQTKEGV-EIPLEQ 449 Query: 513 LSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERL 572 LS + +S + + E S I++ + + ++ + LL V E+ Sbjct: 450 LSGIDIAPYSEKFGKEAPGNLSTEEYGKFLTERSKGIMETYGIAMEEIKGKDLLEVLEKT 509 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 + P+I V+S ME GI+ID + E+ L L++ I++++GE+FNL+SPKQL ++ Sbjct: 510 EMPLIKVLSAMERKGIKIDPVYFAKYEKELEILLSDLQKKIFEIAGEEFNLNSPKQLAEV 569 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 LF KL KTKTG T + LE++ I ILE+R+ +K+K+TY D+LP + Sbjct: 570 LFFKLNLDPVKKTKTG-LSTDEEVLEKLKSDGVEIASYILEYRKYAKLKNTYVDALPKLV 628 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752 + + R+HT ++ T TGRL+S PNLQNIP+KTD G KIR+ FI+ L+ DYSQ Sbjct: 629 DSK-DRLHTTFNQIGTTTGRLSSSNPNLQNIPVKTDEGMKIRQGFIADSGNVLMGIDYSQ 687 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYG 811 IELR+LA ++K L ++N+ D+HR+ A +IF + E+VS + R AKTINFSIIYG Sbjct: 688 IELRVLAELSKDENLIAAYKNNEDLHRVTAKKIFELGEGEEVSREQRIIAKTINFSIIYG 747 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 + F L+ +L IP+ EA DYI RYF ++P + ++ ++ +NGY ET FGRR + Sbjct: 748 KTAFGLSKELGIPQKEATDYINRYFEQYPRVKDFERSIIDYAEKNGYTETYFGRRRIIEG 807 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 I S +I+N ER A+N+ IQG+AA+I ++ MI + K + D K +LLQ+HDEL+FE Sbjct: 808 IISKNKNIKNQAERMAVNSVIQGTAAEILKKVMIEIFKVI-DGKEDISLLLQVHDELIFE 866 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + EE++ II + M + K N V L +N + NW E Sbjct: 867 IKEEKVEEYRTIIENIMRNSV--KFN-DVVLDINTNIGKNWAE 906 Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 93/293 (31%), Positives = 151/293 (51%), Gaps = 18/293 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+D S+ +YRA++A K++ P A+ GF N L +++ + I + F V Sbjct: 6 LLDVSAIMYRAYFANMNFRTKNE--PTGAVYGFTNTLLSIIKEFSPDYIGAAFDV---KR 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 A R+EIY +YKA R +PE LL Q+P + F I +I+G+EADD++ T + Sbjct: 61 ASLKRSEIYSEYKAQRDAVPEDLLLQIPRIEELLDGFNINRFKIEGYEADDVMGTLSQKL 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-------EHVIKKWGIPPEKMVC 181 KEG V +++ DKDL Q++ + K E D E V++ G+ + + Sbjct: 121 SKEGIEVIVVTGDKDLAQILDKNVKIALLGKGEGGDKFKILETDEDVVEYLGVTSKMIPD 180 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236 L GDS D IPG+ IG K AA +L++YG+LE + N ++ + K N++E Sbjct: 181 FFGLIGDSSDGIPGVRKIGPKKAAPMLEKYGDLEGVYENIDKLTEIPGIGKSLIANMIED 240 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 + A +SRKL + D+PI ++ L + +L+ K LEF L+ ++ Sbjct: 241 KDIAFMSRKLATIEKDIPIDCTIDDLKY-SVDNKKLLDLFKTLEFRVLVKKMG 292 >gi|210631309|ref|ZP_03296852.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279] gi|210160076|gb|EEA91047.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279] Length = 932 Score = 320 bits (820), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 182/493 (36%), Positives = 271/493 (54%), Gaps = 25/493 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D ++ +Y+LDS RS A +A+ +L +++P D + + Sbjct: 457 DTVVAAYLLDSVRSDFADAHLAETYL-----------HAALPAAAGEDGAPADAPSAAAR 505 Query: 548 VILQLWLLLRP---KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 +L P L + ++ +++ P++ V++ ME G+ +D L S E+S Sbjct: 506 SAWLARILREPLAAALEAQGAEDIFTKIEMPLVRVLASMERAGMYVDPARLAAQSEELSG 565 Query: 605 NLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQIN 661 + L + I +L+G E+FNLSSP QL +LF KL P+ KT+ G + T A+ LE + Sbjct: 566 QIAELSDRIRELAGGEEFNLSSPMQLSRVLFDKLGLPTAGLKKTQRGYYSTNAKVLEDL- 624 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 D I++ ILE+R+ +KIKSTY D+L + + RVHT Y+ T TGRL+S PNLQ Sbjct: 625 AKDYEIVRLILEYRERTKIKSTYLDTL-GALRETDGRVHTTYNQTITATGRLSSSNPNLQ 683 Query: 722 NIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 NIP +++LG +++AF ++ DYSQIELR+LAH++ L F D H Sbjct: 684 NIPTRSELGHAVKKAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVGAFNEGEDFHAET 743 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AA +FGV +E+V+PQ+R AK +NF I+YG + L+ L IP +EA + I YF +PG Sbjct: 744 AARVFGVPVEEVTPQLRSRAKAVNFGIVYGQQAYGLSQALDIPMAEAREMIDAYFRAYPG 803 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + Y+++T F +Q GY ET++GRR E+ P R ER A+N P+QGSAADI + Sbjct: 804 VRTYLDETVAFAKQTGYAETMYGRRRPIPELRVPAQ--RMFGERTAMNHPMQGSAADIIK 861 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AM+ V + L A KM+LQ+HDEL FE P E+ ++ ME LRVP Sbjct: 862 IAMVRVAERLRTEGFAAKMILQVHDELDFECPVGEVDALVAMVREEMEGVA----QLRVP 917 Query: 962 LKVNIKVSNNWQE 974 L + V W E Sbjct: 918 LIADASVGETWAE 930 Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 102/343 (29%), Positives = 169/343 (49%), Gaps = 28/343 (8%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++DG+S ++RAF+A P DG P NA+ GF NM K++ + + FD Sbjct: 16 VIDGNSLMHRAFHAVPPTMNAPDGSPTNAVFGFLNMFLKMVDEFSPDGVV----CAFDKG 71 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 R E+ P YKA RP + L Q P+++ + +P +E++G+E DDI+ T Sbjct: 72 HPKVRMEMLPQYKAQRPPMDPNLRAQFPMIKELLASLSVPVVELEGWEGDDILGTLARRG 131 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHVIKKWGIPPEK 178 E G + +++ D+D+ QLV+ + T K E D+ H GI PE Sbjct: 132 EAAGCDMYLVTGDRDMYQLVTDHVHVVSTRKGLSDIAIMTPESVDDLYH-----GITPEL 186 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + L GDS DNIPG+PGIG K A+ L+ +YG+L+ ++ +A +K K E++ + + Sbjct: 187 VPDFYGLKGDSSDNIPGVPGIGPKKASALIVQYGSLDEVIAHADEVK-GKMGESLRAHID 245 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR-VATTYDCDAA 297 A +SRK+ + TD P+ L+ + + + + L AL + NR +A D A+ Sbjct: 246 DALVSRKIATIMTDAPVECDLDEVSFPAYDAASVSAALGALGIMAMQNRFLALLGDAAAS 305 Query: 298 NIE------PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSL 334 P VL ++ ++ E E +R++ + F L Sbjct: 306 QAAVSKLELPEVLRVSLDASRAFD-EAESNRESAEMNACFDEL 347 >gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] Length = 893 Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 171/428 (39%), Positives = 260/428 (60%), Gaps = 11/428 (2%) Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610 QL+ + L L +Y ++ P++ +++ ME TG+ +++ L + A + + +E Sbjct: 471 QLYGPMSAALADANLTELYGTVELPLVPILAAMERTGVAVNRAALGRALAAANARIAEIE 530 Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPII 668 ++IY L+G +FN+SSPKQLG++LF +L P KTKTG + T A+ LE++ +P++ Sbjct: 531 QDIYALAGTEFNISSPKQLGEVLFDRLGLTSPKMKKTKTG-YSTNAEVLEEMRAA-HPVV 588 Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728 +L +R SKI+STY + + I T RVHT ++ T TGRL+S +PNLQNIP++T+ Sbjct: 589 DRVLTYRMWSKIRSTYLEGIGALIRPDTGRVHTSFNQTVTATGRLSSSDPNLQNIPVRTE 648 Query: 729 LGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 G+ +R A P L+SADYSQIELRILAH++ L F DIH A+E+F Sbjct: 649 EGRAVR-ALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVF 707 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 GV + +V+ RR AK +NF I+YG+S + L+ L IPR EAA YI+RYF R+ G+ ++ Sbjct: 708 GVPLAEVTSAQRRSAKAVNFGIVYGLSDYGLSQDLGIPRKEAAGYIERYFERYHGVRAFL 767 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 ++ NG+V T++GRR INS R+ ER A+N PIQG+AAD+ + AMI Sbjct: 768 DRVVADAHTNGFVTTLYGRRRALPAINSRNFMQRSNAERMAMNTPIQGTAADLIKIAMIR 827 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 +L + +++LLQ+HDELV EV +EI ++++ +M A L VPL V++ Sbjct: 828 ADAALRAAGVKSRILLQVHDELVLEVVNDEIAQVTELLTAAMSGAA----QLAVPLAVDV 883 Query: 967 KVSNNWQE 974 NW E Sbjct: 884 HTGKNWAE 891 Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 101/250 (40%), Positives = 143/250 (57%), Gaps = 9/250 (3%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++DGSS +RAFYA L H G+ NAI GF ML KLL KE S + FD Sbjct: 7 VIDGSSLFFRAFYALQLPPNTH-GVHTNAIHGFAMMLVKLL----KEHAPSQIVIAFDKS 61 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR +YPDYK R K PE L+ Q+PL++ GIP +E+ +EADDII T A Sbjct: 62 RTTFRTALYPDYKGTRDKTPEELIEQIPLLKELAACLGIPFVELDDYEADDIIGTLGTQA 121 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCLQA 184 G A +++ D+D +QL+ P + T K + D +++G P +++ L+ Sbjct: 122 AAAGAAAIVVTGDRDALQLIRPGLDVLLTKKGISDTRRYDTAAFEEEYGFAPLRLIDLKG 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS DNI G+PGIG KTA LL YG +E++L +A + KK +++EY + A LS+ Sbjct: 182 LMGDSSDNILGVPGIGPKTATKLLLSYGTIESVLDHAGEVAGKKLSASLIEYRDQALLSK 241 Query: 245 KLVMLRTDVP 254 +L ++ DVP Sbjct: 242 ELATIKCDVP 251 >gi|227833200|ref|YP_002834907.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] gi|227454216|gb|ACP32969.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] Length = 880 Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 185/510 (36%), Positives = 298/510 (58%), Gaps = 23/510 (4%) Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 H K +L GI +RG D L +Y+L G+ ++ + ++Q+ L KS Sbjct: 385 HEAKAAWHMLAGRGIELRGIAHDTALAAYLLRPGQRTYALTDVSQRHLQ-------KSLG 437 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 ++ I D + ++ + I++L L +L +Y L+ P++ +++QME Sbjct: 438 AATEQLSILD---ENPLVDQAGAIMELAAELTAQLQEIDSFELYTDLELPLVSILAQMEA 494 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAK 644 GI +D+D+L+ + + E +L+G+ NL+SPKQL +LF P K Sbjct: 495 AGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNSPKQLQAVLFDTFDMPKTKK 554 Query: 645 TKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 TKTG + T A+++EQ+ +P + ++L R+ K+K+T + L I R+HT + Sbjct: 555 TKTG-YSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTTL-EGLIKTIQP-DGRIHTTF 611 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762 + T TGRL+S EPNLQNIP++T+ G++IR AF+ + LI+ADYSQIE+R++AH++ Sbjct: 612 NQTVTSTGRLSSTEPNLQNIPVRTEAGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLS 671 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 L + + D+H V +++F V +++V+P++RR K +++ ++YG+S F L+ QL Sbjct: 672 ADPGLIEAYREGEDLHNYVGSKVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQQLG 731 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IP EA + ++ YF RF G+ Y+++ R++GY T+FGRR + E+NS R Sbjct: 732 IPAREAKEIMESYFERFGGVKRYLDEVVVQARKDGYTSTVFGRRRYLPELNSDNRVAREN 791 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ERAA+NAPIQG+AADI + AMI V K+LE LA+++LLQ+HDELV EV E + Sbjct: 792 AERAALNAPIQGTAADIIKVAMIRVDKALE--ALASRVLLQVHDELVVEVAPGEAEDVQR 849 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 I+ M+KA I L VPL+V++ V NW Sbjct: 850 ILEREMDKA----IELTVPLEVSVGVGKNW 875 Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 150/288 (52%), Gaps = 12/288 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P + G NA+ GF +ML +L + + +A V F Sbjct: 8 LLLIDGHSMAFRAFYALPAENFSTSGGQHTNAVYGFLSMLANILAEEKPDFVA----VAF 63 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR +++P+YKA R PE Q+ L+R + GI + + FEADDI+AT + Sbjct: 64 DVGRKTFRTDMFPEYKAQREAAPEEFRGQVELIRDVLETLGITTLSRENFEADDIVATLS 123 Query: 126 YIAEKEGFAVTIISTDKDLMQLV-SPTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A + + +++ D+D +QLV TT LY K + E V +K+G+ PE+ Sbjct: 124 TQAGAD-YQTFLVTGDRDYLQLVDDSTTVLYPMRGVSKLHRFTPEAVKEKYGLSPEQYPD 182 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+P +P +G KTA + +YG+L+ ++ +A IK +N + E + Sbjct: 183 FAALRGDPSDNLPSVPKVGEKTATKWITQYGSLDALIEHAEEIKGVA-GQNFRDRIEQVK 241 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRV 288 L+R+L + TD+ + + L + + + LEF T L RV Sbjct: 242 LNRQLTQMVTDMDLEVGPADLEFKGAVASEVAARFDELEFGTNLRERV 289 >gi|262184186|ref|ZP_06043607.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] Length = 835 Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 185/510 (36%), Positives = 298/510 (58%), Gaps = 23/510 (4%) Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 H K +L GI +RG D L +Y+L G+ ++ + ++Q+ L KS Sbjct: 340 HEAKAAWHMLAGRGIELRGIAHDTALAAYLLRPGQRTYALTDVSQRHLQ-------KSLG 392 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 ++ I D + ++ + I++L L +L +Y L+ P++ +++QME Sbjct: 393 AATEQLSILD---ENPLVDQAGAIMELAAELTAQLQEIDSFELYTDLELPLVSILAQMEA 449 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAK 644 GI +D+D+L+ + + E +L+G+ NL+SPKQL +LF P K Sbjct: 450 AGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNSPKQLQAVLFDTFDMPKTKK 509 Query: 645 TKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 TKTG + T A+++EQ+ +P + ++L R+ K+K+T + L I R+HT + Sbjct: 510 TKTG-YSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTTL-EGLIKTIQP-DGRIHTTF 566 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762 + T TGRL+S EPNLQNIP++T+ G++IR AF+ + LI+ADYSQIE+R++AH++ Sbjct: 567 NQTVTSTGRLSSTEPNLQNIPVRTEAGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLS 626 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 L + + D+H V +++F V +++V+P++RR K +++ ++YG+S F L+ QL Sbjct: 627 ADPGLIEAYREGEDLHNYVGSKVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQQLG 686 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IP EA + ++ YF RF G+ Y+++ R++GY T+FGRR + E+NS R Sbjct: 687 IPAREAKEIMESYFERFGGVKRYLDEVVVQARKDGYTSTVFGRRRYLPELNSDNRVAREN 746 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ERAA+NAPIQG+AADI + AMI V K+LE LA+++LLQ+HDELV EV E + Sbjct: 747 AERAALNAPIQGTAADIIKVAMIRVDKALE--ALASRVLLQVHDELVVEVAPGEAEDVQR 804 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 I+ M+KA I L VPL+V++ V NW Sbjct: 805 ILEREMDKA----IELTVPLEVSVGVGKNW 830 Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 80/246 (32%), Positives = 126/246 (51%), Gaps = 7/246 (2%) Query: 48 LLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGI 107 +L N E AV FD TFR +++P+YKA R PE Q+ L+R + GI Sbjct: 1 MLANILAEEKPDFVAVAFDVGRKTFRTDMFPEYKAQREAAPEEFRGQVELIRDVLETLGI 60 Query: 108 PAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLY---DTVKEEKI 163 + + FEADDI+AT + A + + +++ D+D +QLV TT LY K + Sbjct: 61 TTLSRENFEADDIVATLSTQAGAD-YQTFLVTGDRDYLQLVDDSTTVLYPMRGVSKLHRF 119 Query: 164 DIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR 223 E V +K+G+ PE+ AL GD DN+P +P +G KTA + +YG+L+ ++ +A Sbjct: 120 TPEAVKEKYGLSPEQYPDFAALRGDPSDNLPSVPKVGEKTATKWITQYGSLDALIEHAEE 179 Query: 224 IKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-T 282 IK +N + E +L+R+L + TD+ + + L + + + LEF T Sbjct: 180 IKGVA-GQNFRDRIEQVKLNRQLTQMVTDMDLEVGPADLEFKGAVASEVAARFDELEFGT 238 Query: 283 KLINRV 288 L RV Sbjct: 239 NLRERV 244 >gi|309776902|ref|ZP_07671872.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53] gi|308915313|gb|EFP61083.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53] Length = 861 Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 178/504 (35%), Positives = 292/504 (57%), Gaps = 20/504 (3%) Query: 475 VLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPI 530 LH+ GI + D+M+ ++++D S +D +A+K+ S + ++ + + Sbjct: 372 ALHKNGIEFADVKFDVMIAAFLVDGTLSDYD--KLAEKYQFDRSLLKDDVFGKKGKGKLV 429 Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 D + +A+ ++ + L L L ++ +++ ++ P+ V+ ME G+ Sbjct: 430 DL---DEAARYAMLQADHLQDLVSELDASLKEMEMKELFDTIEMPLTHVLYAMEKEGVVT 486 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 L +++ S + +L IY+++G +FN++SPKQL IL+ +L +G K Sbjct: 487 SLSTLDEIARATSDKIDTLSAQIYEMAGMEFNINSPKQLAQILYDELGLKAGKK------ 540 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 ++TA D+ + +PII +LE R+ KI STYA L H+ K ++HT ++ T T Sbjct: 541 RSTAADVLEKLAKQHPIIPLLLEHRKYQKIYSTYAVGLSKHVLK-DGKIHTIFNQIQTQT 599 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S EPNLQNI ++ + G++IR+AF++ L+SADYSQIELR+LAH+A + Sbjct: 600 GRLSSSEPNLQNISVRDEEGKEIRKAFVASEGHVLLSADYSQIELRMLAHMADEEVMIDA 659 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 F + +DIH A +IF V+ + V MRR AKT+NF I+YG S F L+ QL I R EA Sbjct: 660 FNHGIDIHTKTAMQIFDVDHDSVDANMRRSAKTVNFGIVYGQSDFGLSEQLGISRKEAHA 719 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I +YF +P I +++ T F +NGYV+T+F RR + EI+ +R +RAA+NA Sbjct: 720 FIDKYFASYPNIKSFMDSTIQFCEENGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNA 779 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 PIQGSAAD+ + AMI + + + ++ ++M+LQIHDEL+F+V E+E+ I+ M++ Sbjct: 780 PIQGSAADLIKLAMIHIFERMRREQVKSRMILQIHDELIFDVWEDELEQMKSIVEEGMQQ 839 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 A + LRVPL + +W E Sbjct: 840 A----MKLRVPLIAEANIGKSWYE 859 Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 111/346 (32%), Positives = 179/346 (51%), Gaps = 20/346 (5%) Query: 7 LFLVDGSSFIYRAFYATPL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L L+DG+S ++RA+YAT + + +G+P NA+ GF M+ K L +++ V Sbjct: 4 LLLIDGNSMLFRAYYATVYGRMMKTSNGIPTNAVYGFITMINKALSMVEPDAVL----VA 59 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 +D TFR+E Y +YK R ++ + L+ Q P+ R A+G+ E +G EADDII + Sbjct: 60 WDAGKPTFRHETYTEYKGTRKELDQELIVQFPIAREFLDAYGMKRYECEGIEADDIIGS- 118 Query: 125 TYIAEK-EGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEKM 179 +A+K + I+S+D+DL+QL+ PTT +Y + E +D + + GI P ++ Sbjct: 119 --MAKKYPDVEIHILSSDRDLLQLIDPTTDVYLMKKGITEMEVMDEAKLKEAMGIVPSQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD+ DNIPG+ GIG KTA LL EY ++N+ + IK K +E + E Sbjct: 177 IDLKALMGDTADNIPGVKGIGEKTALKLLSEYETVDNVYAHIDEIK-GKLKEKLETDKEK 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS+ L ++ D I +P E ++L++ L F E + T + Sbjct: 236 AFLSKYLATIKVDAEIPLPFEAMLLQEPK-EELHDFFVKYEMKSFVKDTMDTREVKKEGS 294 Query: 300 EPVVLDINTT-ENKGIAIETEIDRDTTIKTSQFS---SLSDQTSKI 341 VV I++ G + +D ++ + SL DQT I Sbjct: 295 RSVVKQISSQLLQDGALVYANVDNESYYDAVLYGFAVSLKDQTEYI 340 >gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2] Length = 888 Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 175/491 (35%), Positives = 287/491 (58%), Gaps = 15/491 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D L +Y+L + S+++ IA + + +S + +D SD Q H + Sbjct: 406 DTALAAYLLVPDQRSYELQQIALERAGIELSDA-ESDSGQLALDLESDQTAQTHG-HRAA 463 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 +L++ +L K+ + VY ++ P++ V+++ME+ GI +D+ L + E +K Sbjct: 464 ALLEVHDILAAKIDEANMSQVYRDIELPLVPVLARMELAGIAVDEAGLSGLIDEFTKQAN 523 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNP 666 + E Y+ G + NL SPKQL +LF +L P +TKTG + T A+ L ++ ++P Sbjct: 524 ASAELAYEAIGHEVNLGSPKQLQTVLFDELDMPKTKRTKTG-YTTDAEALAELFIKTEHP 582 Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 ++++L +R +K+K T L R+HT Y TGRL+SL+PNLQNIP++ Sbjct: 583 FLQHLLAYRDSTKLKQTVVGLLKT--VAEDGRIHTTYQQTVAATGRLSSLDPNLQNIPVR 640 Query: 727 TDLGQKIRRAFISPP---TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 T+ G++IR FI+ P +L++ADYSQIE+RI+AH++ L Q F++ D+H V + Sbjct: 641 TESGRRIREIFIADPHVDDARLLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGS 700 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 ++FGV I++V MR K +++ ++YG+S + L+ QL I EA + +++YF RF + Sbjct: 701 KVFGVGIDEVDSAMRSKVKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVK 760 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 +Y+++ R NGY ETI GRR + ++S + +R++ ERAA+NAPIQGSAADI + A Sbjct: 761 DYLDEIVEQARANGYTETIMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIA 820 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ V L DHK + +LLQ+HDE++ +V EEI + +QI+ M A L VPL Sbjct: 821 MLKVSDRLGDHK--STVLLQVHDEIIVDVHPEEIDSVTQIVTEEMGSA----FELDVPLD 874 Query: 964 VNIKVSNNWQE 974 VN+ +W + Sbjct: 875 VNVGTGTSWHD 885 Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 155/303 (51%), Gaps = 16/303 (5%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 Q L L+DG S YRAF+A P+ + G NAI GF +ML +L R ES SH Sbjct: 3 QVNESLLLIDGHSLAYRAFHALPVENFSTSTGQSTNAIYGFISMLINVL---RDES-PSH 58 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV FD TFR E YP+YKA R K P PQ+ L++ A GI + +GFEADD Sbjct: 59 VAVAFDLGRQTFRLEEYPEYKAGRAKTPPEFHPQIDLIKDIVVAMGITVVTKEGFEADDA 118 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLY---DTVKEEKIDIEHVIKKWGIPP 176 +AT + + G V ++S DKD QL + + T LY ++ + +K+ + P Sbjct: 119 LATMARMGTEAGAQVEVMSGDKDSFQLSNDSVTILYPKRGVSDLNRMTPAAIEEKYAVTP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENI 233 L AL G+ DN+PG+PG+G KTAA L YG+L +L NA IK K K R++I Sbjct: 179 VNYRGLAALVGEKADNLPGVPGVGDKTAAKWLAAYGDLPGVLENADAIKGKVGEKLRDHI 238 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E RL+R L DV + + L + + L S LEF L R++ + Sbjct: 239 SEVERNFRLNR----LLDDVDLGLTYADLKWGEGDPSELSSLFDQLEFQALGKRLSAIFG 294 Query: 294 CDA 296 +A Sbjct: 295 EEA 297 >gi|330872973|gb|EGH07122.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 321 Score = 319 bits (817), Expect = 2e-84, Method: Composition-based stats. Identities = 155/311 (49%), Positives = 217/311 (69%), Gaps = 4/311 (1%) Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 D P+ K ++++R +SK+KSTY D LP IN RT R+HT Y A +TGRL+S +PNLQNI Sbjct: 13 DFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVAVTGRLSSSDPNLQNI 72 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 PI+T G++IR+AF++P KL++ADYSQIELRI+AH+A+ L F N LD+HR AA Sbjct: 73 PIRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAA 132 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 E+FGV +E V+ MRR AK INF +IYG+S F LA Q+ + R ++ Y+ RYF R+PG+ Sbjct: 133 EVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVL 192 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 +Y+E+T+ + G+VETIFGRR++ +IN+ S+R ER AINAP+QG+AADI ++A Sbjct: 193 DYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKA 252 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M++V+ LE+ L +++LQ+HDELV EV E+ + S+ I M A L VPL Sbjct: 253 MVAVNGWLEESGLDARVILQVHDELVLEVREDLVDQISEQIRPHMSGAA----ELAVPLL 308 Query: 964 VNIKVSNNWQE 974 V + V NNW E Sbjct: 309 VEVGVGNNWDE 319 >gi|257125590|ref|YP_003163704.1| DNA polymerase I [Leptotrichia buccalis C-1013-b] gi|257049529|gb|ACV38713.1| DNA polymerase I [Leptotrichia buccalis C-1013-b] Length = 1046 Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 197/542 (36%), Positives = 315/542 (58%), Gaps = 26/542 (4%) Query: 447 KEILSY-LKKFF---ENEHFLKIGHNI--KYDKLVLHRYGISMRGFEDIMLMSYVLDSGR 500 KEI++Y +K++ E+E+F G+++ K + R+GI + DI+L YVL + Sbjct: 511 KEIIAYNVKEYMKSGESEYF---GYSVGGKTYGINEERFGIKCTEYFDILLARYVLGT-E 566 Query: 501 SSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 S +I I T +E K + +SD V E + + I +L ++ R Sbjct: 567 SLQEIEEIILDEFGVEIATFEEQFKKERRKKDFSDVSDDVVCEFLSKRTFFIYKLEIIFR 626 Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617 +L E+ L+++++L+ +I V++QME TGI+ID+ + E+ + + L+ +IY L+ Sbjct: 627 NRLQNEQFLNIFDKLESRLIPVLAQMEETGIKIDKKYFSEFQNELEEKINMLQSDIYKLA 686 Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG-----DNPII-KNI 671 +FN+ SP+QLG++LF KL+ PSG KTKTG + T + LE I D +I K + Sbjct: 687 DGEFNIDSPQQLGEVLFEKLQIPSGKKTKTG-YSTNVEVLEMIANNRELTEDKRMIGKKL 745 Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731 LE+R K+ STY + +P +K +R+HT ++ T TGRL+S PNLQNIP++TD G Sbjct: 746 LEYRAYKKLLSTYIEPIPKLADKE-ERIHTTFNQNGTSTGRLSSANPNLQNIPVRTDDGI 804 Query: 732 KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI-FGVNI 790 +IR F+S LIS DYSQIELR+LA ++K L Q ++++ D+H + A +I F Sbjct: 805 RIRTGFVSKEGHSLISFDYSQIELRVLAELSKDRHLVQAYQDNQDLHNLTARKIFFKTEE 864 Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850 +++S R AK INFSI+YG +PF L+ +L I EA+ YI YF +P + ++++ Sbjct: 865 DEISRHERSIAKVINFSILYGKTPFGLSKELGITVQEASQYITTYFEEYPRVRKFLDIVT 924 Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910 + +G+VET +G R + IN+ +++ R A+N +QG+AA+I ++ MI +H+ Sbjct: 925 ETAKLHGFVETFYGTRRYISGINATNKNVQAQAVRMAVNTVVQGTAANIIKKVMIELHEE 984 Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970 ++ + KMLLQ+HDEL+FEV +E + I ME K +VPLK N V+ Sbjct: 985 FKNDE-NIKMLLQVHDELIFEVRDEFAKEYMEKIEKIMENTVKFK---KVPLKANGSVAK 1040 Query: 971 NW 972 NW Sbjct: 1041 NW 1042 Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 88/287 (30%), Positives = 136/287 (47%), Gaps = 17/287 (5%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D S+ +YR+ +A + R G+ A GF N L +++ R + + + V D Sbjct: 6 ILDTSAIMYRSHFAL-MGMRNSSGMSTGATFGFINTLESVIREFRPDYLVACLDVKRDEL 64 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 T E Y KA+R +PE L+ Q+ + + IP + G EADD+IAT+ Sbjct: 65 ERTGELETY---KAHRESMPEELVMQIDTIMKVLDGYRIPKYKKAGQEADDVIATFATKF 121 Query: 129 EK---EGFAVTIISTDKDLMQLVSPTTCLY--------DTVKEEKIDIEHVIKKWGIPPE 177 E V +I+ DKDL QLV + K K D E V++ G+ P+ Sbjct: 122 SNDADEQIEVFVITGDKDLTQLVDGKINIALLGKGDKNSAFKHIKTD-EDVVEYLGVTPD 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 K+ L L GD D IPG+ GIG K L+ YGNLE I N IK K++E +L Sbjct: 181 KIPDLFGLMGDKSDGIPGVAGIGPKNGVKLITTYGNLEGIYENIDEIKG-KQKEKLLTDK 239 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A +SR+L ++ ++ + L E+ + L+ + L F + Sbjct: 240 ENAFISRELATVKRELDVEYDKNKLKFEEKDFDSLLKLYEELNFKRF 286 >gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51866] Length = 887 Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 191/518 (36%), Positives = 304/518 (58%), Gaps = 26/518 (5%) Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519 HF K Y KL+ G ++ G D + Y+L G+ +++IA + Q+ L +K+ Sbjct: 389 HFAKR----TYHKLI--SRGFTLGGIAHDTAIAGYLLRPGQRTYEIADVYQRHL---QKQ 439 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 + +S + + DS + IE + +L+L L +L + L +Y L+ P+I + Sbjct: 440 LPQSDGQ---LSLLDDSPSEPLLIE-AMAVLELVPRLTDELSDIESLELYTDLEIPLITI 495 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLK 638 ++ ME TGI +D L++ + EE DL+G+ NLSSPKQL +LF Sbjct: 496 LAAMEDTGIAVDTHTLEEQLDGFVDLVAQEEEAARDLAGDPSLNLSSPKQLQVVLFETFD 555 Query: 639 FPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 P KTKTG + T A+++E + D+P ++++L R+ SK+KST + L + Sbjct: 556 LPKTKKTKTG-YSTAAKEIEALAKKTDHPFLQHLLAHREYSKMKSTL-EGLIRSVGG-DG 612 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELR 756 R+HT + TGRL+S +PNLQNIP++TD G+KIR AF+ + L++ADYSQIE+R Sbjct: 613 RIHTTFKQTVASTGRLSSTDPNLQNIPVRTDAGKKIRSAFVVGEGFETLLTADYSQIEMR 672 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 ++AH+++ L Q +++ D+H V +++F V I++V+P++RR K +++ + YG+S + Sbjct: 673 VMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYGLSSYG 732 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 LA QL IP+ EA + YF RF G+ Y+ + R++GY T+FGRR + E+ S Sbjct: 733 LAAQLDIPQGEAKSIMDSYFERFGGVKNYLRSVVDEARKDGYTSTLFGRRRYLPELTSTN 792 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 R ERAA+NAPIQG+AADI + AM+ V++ L+ L +++LLQ+HDELV EV E Sbjct: 793 RIARENAERAALNAPIQGTAADIIKVAMVRVNRRLD--SLKSRVLLQVHDELVLEVAPGE 850 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + S+I+ M+ A I+LRVPL+V+ NW E Sbjct: 851 LEEVSRIVSEEMDGA----ISLRVPLEVSTGHGTNWDE 884 Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 94/263 (35%), Positives = 140/263 (53%), Gaps = 11/263 (4%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 E L L+DG S +RAFYA P + G NA+ GF +M +L + +H A Sbjct: 9 EKTLLLIDGHSMAFRAFYALPAENFSTTGGQHTNAVYGFLSMFVNILTSEEP----THLA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFRNE++P+YKA R PE Q+ +++ A G+ +E G+EADD+IA Sbjct: 65 VAFDVARETFRNELFPEYKAQRAPTPEEFKGQVEILKDILHAMGVTTVEKPGYEADDVIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEE---KIDIEHVIKKWGIPPEK 178 T A K+G I++ D+D QLV+ T LY T ++ V KK+ + P + Sbjct: 125 TLATAATKQGMKTLIVTGDRDSFQLVNDDVTVLYPTRGVSTLNRMTPAAVEKKYDLTPTQ 184 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 AL GD DN+P IPG+G KTA +++Y L N+L + IK K + + E + Sbjct: 185 YPDFAALRGDPSDNLPKIPGVGEKTATKWIKKYETLGNLLAHVDEIK-GKVGDALRERVD 243 Query: 239 TARLSRKLVMLRTDVPITI-PLE 260 ++RKL + D+P+ + PL+ Sbjct: 244 QVAMNRKLTEMVKDLPLEVSPLQ 266 >gi|293400879|ref|ZP_06645024.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305905|gb|EFE47149.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 865 Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 173/485 (35%), Positives = 289/485 (59%), Gaps = 13/485 (2%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 DIML ++++D S ++ + + KE + +K + I +Q ++A+ + Sbjct: 390 DIMLAAFLVDQTISDYEKLAEKYHFDQSIHKEDIYGKKGKPKL--IDFAQQSKYAMLQAE 447 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 + + LL L ++ +++ ++ P+ V+ ME G+ D+ +L++++ E + Sbjct: 448 NLYSIVALLDETLQEMEMKDLFDTIEMPLTRVLYAMEKEGVYCDKAVLQKIADETEAKIN 507 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 +L IY+++G +FN++SPKQL +L+ +L +G K ++TA D+ + +PI Sbjct: 508 ALSLQIYEIAGMEFNINSPKQLASVLYDELGLKAGKK------RSTAADVLEKLVHVHPI 561 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 I +LE R+ KI STYA L HI ++HT ++ T TGRL+S EPNLQNI ++ Sbjct: 562 IPLLLEHRKYQKIYSTYAIGLAKHI-LADGKIHTLFNQIQTQTGRLSSSEPNLQNISVRN 620 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 + G+ IR+AF++ L+SADYSQIELR+LAH+A + F + +DIH A +IF Sbjct: 621 EEGKGIRKAFVASEGHVLLSADYSQIELRMLAHMADEEQMIDAFNHDIDIHTKTAMQIFD 680 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 V ++V MRR AKT+NF I+YG S F L+ QL I R EA +I++YF +P I +++ Sbjct: 681 VAHDEVDANMRRSAKTVNFGIVYGQSDFGLSEQLGISRKEAHTFIEKYFASYPKIKTFMD 740 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 T + ++GYV+T++ RR + EI +R +RAA+NAPIQGSAAD+ + AMI + Sbjct: 741 ATIAYCEEHGYVKTLYNRRRYIKEIADKNYMMREFGKRAAMNAPIQGSAADLIKMAMIHI 800 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 ++ +++ K+ ++M+LQIHDEL+F+V E+EI +QI+ M+ + L+VPL Sbjct: 801 YQKMQEEKVKSRMILQIHDELIFDVCEDEIDKMTQIVEEGMQNV----MKLKVPLIAQAN 856 Query: 968 VSNNW 972 + +W Sbjct: 857 IGKSW 861 Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/265 (35%), Positives = 150/265 (56%), Gaps = 13/265 (4%) Query: 7 LFLVDGSSFIYRAFYATPL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L L+DG+S ++RA+YAT + + +G+P NA+ GF M+ K + + V Sbjct: 8 LLLIDGNSMLFRAYYATVYGRMMKTSNGIPTNAVYGFITMINKAFDMIHPDMVL----VA 63 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 +D TFR+E Y +YK R ++ + L+ Q P+ R A+G+ E G EADDII Sbjct: 64 WDSGKPTFRHETYTEYKGTRKELDQELIVQFPIAREYLDAYGLQRYECDGIEADDIIGCM 123 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 + + I+S+D+DL+QL+ PTT +Y K E ++ E +++ GI P +++ Sbjct: 124 A--RQHPELEIHILSSDRDLLQLIDPTTDVYLMKKGISEIEVMNEEKLMETMGIKPSQII 181 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+AL GDS DNIPG+ GIG KTA LL+EY ++N+ + IK K +E + E A Sbjct: 182 DLKALMGDSADNIPGVKGIGEKTALKLLKEYDTVDNVYAHIEEIK-GKLKEKLETDREKA 240 Query: 241 RLSRKLVMLRTDVPITIPLEHLILE 265 LS+ L ++TD + I + L+L+ Sbjct: 241 FLSKYLATIKTDETLPIDITALMLQ 265 >gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51867] Length = 887 Score = 318 bits (814), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 191/518 (36%), Positives = 304/518 (58%), Gaps = 26/518 (5%) Query: 461 HFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519 HF K Y KL+ G ++ G D + Y+L G+ +++IA + Q+ L +K+ Sbjct: 389 HFAKR----TYHKLI--SRGFTLGGIAHDTAIAGYLLRPGQRTYEIADVYQRHL---QKQ 439 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 + +S + + DS + IE + +L+L L +L + L +Y L+ P+I + Sbjct: 440 LPQSDGQ---LSLLDDSPSEPLLIE-AMAVLELVPRLTDELSDIESLELYTDLEIPLITI 495 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLK 638 ++ ME TGI +D L++ + EE DL+G+ NLSSPKQL +LF Sbjct: 496 LAAMEDTGIAVDTHTLEEQLDGFVDLVAQEEEAARDLAGDPSLNLSSPKQLQVVLFETFD 555 Query: 639 FPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 P KTKTG + T A+++E + D+P ++++L R+ SK+KST + L + Sbjct: 556 LPKTKKTKTG-YSTAAKEIEALAKKTDHPFLQHLLAHREYSKMKSTL-EGLIRSVGG-DG 612 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELR 756 R+HT + TGRL+S +PNLQNIP++TD G+KIR AF+ + L++ADYSQIE+R Sbjct: 613 RIHTTFKQTVASTGRLSSTDPNLQNIPVRTDAGKKIRSAFVVGEGFETLLTADYSQIEMR 672 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 ++AH+++ L Q +++ D+H V +++F V I++V+P++RR K +++ + YG+S + Sbjct: 673 VMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYGLSSYG 732 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 LA QL IP+ EA + YF RF G+ Y+ + R++GY T+FGRR + E+ S Sbjct: 733 LAAQLDIPQGEAKSIMDSYFERFGGVKNYLRSVVDEARKDGYTSTLFGRRRYLPELTSTN 792 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 R ERAA+NAPIQG+AADI + AM+ V++ L+ L +++LLQ+HDELV EV E Sbjct: 793 RIARENAERAALNAPIQGTAADIIKVAMVRVNRRLD--SLKSRVLLQVHDELVLEVAPGE 850 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + S+I+ M+ A I+LRVPL+V+ NW E Sbjct: 851 LEEVSRIVSEEMDGA----ISLRVPLEVSTGHGTNWDE 884 Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/263 (35%), Positives = 141/263 (53%), Gaps = 11/263 (4%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 E L L+DG S +RAFYA P + G NA+ GF +M +L + +H A Sbjct: 9 EKTLLLIDGHSMAFRAFYALPAENFSTTGGQHTNAVYGFLSMFVNILTSEEP----THLA 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFRNE++P+YKA R PE Q+ +++ A G+ +E G+EADD+IA Sbjct: 65 VAFDVARETFRNELFPEYKAQRAPTPEEFKGQVEILKDILHAMGVTTVEKPGYEADDVIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEE---KIDIEHVIKKWGIPPEK 178 T A K+G I++ D+D QLV+ T LY T ++ V KK+ + P + Sbjct: 125 TLATAATKQGMKTLIVTGDRDSFQLVNDDVTVLYPTRGVSTLNRMTPAAVEKKYDLTPTQ 184 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 AL GD DN+P IPG+G KTA +++Y L+N+L + IK K + + E + Sbjct: 185 YPDFAALRGDPSDNLPKIPGVGEKTATKWIKKYETLDNLLAHVDEIK-GKVGDALRERVD 243 Query: 239 TARLSRKLVMLRTDVPITI-PLE 260 ++RKL + D+P+ + PL+ Sbjct: 244 QVAMNRKLTEMVKDLPLEVSPLQ 266 >gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] Length = 861 Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 173/488 (35%), Positives = 284/488 (58%), Gaps = 19/488 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKW---LSYTRKEILKSRKSSIPIDKISDSQVQEHAIE 544 D+M+ ++++D S +D +A+K+ S + ++ + +D + +A+ Sbjct: 386 DVMIAAFLVDGTLSDYD--KLAEKYQFDRSLLKDDVFGKKGKGKLVDS---DEAARYAMA 440 Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 ++ + L L L ++ ++ ++ P+ V+ ME G+ L +++ S Sbjct: 441 QADYLQDLVAKLDTALREMEMKELFTTIEMPLTHVLYAMEKEGVVTSLSTLDEIAKATSD 500 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664 + +L IY+++G +FN++SPKQL IL+ +L +G K ++TA D+ + Sbjct: 501 KIDALSAKIYEIAGMEFNINSPKQLAGILYDELGLKAGKK------RSTAADVLEKLASQ 554 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 +P+I +LE R+ KI STYA L H+ K ++HT ++ T TGRL+S EPNLQNI Sbjct: 555 HPMIPLLLEHRKYQKIYSTYAVGLSKHVLK-DGKIHTIFNQIQTQTGRLSSSEPNLQNIS 613 Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 ++ + G++IR+AF++ L+SADYSQIELR+LAH+A + F + +DIH A + Sbjct: 614 VRDEEGKEIRKAFVASEGHVLLSADYSQIELRMLAHMANEEVMIDAFNHGIDIHTKTAMQ 673 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 IF V + V MRR AKT+NF I+YG S F L+ QL I R EA +I +YF +P I Sbjct: 674 IFDVEHDAVDANMRRSAKTVNFGIVYGQSDFGLSEQLGITRKEAHAFIDKYFASYPNIKN 733 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 +++ T F ++GYV+T+F RR + EI+ +R +RAA+NAPIQGSAAD+ + AM Sbjct: 734 FMDTTIAFCEEHGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQGSAADLIKLAM 793 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 I ++K +++ ++ ++M+LQIHDEL+F+V EEE+ I+ M+ A + LRVPL Sbjct: 794 IHIYKKMQEEQVKSRMILQIHDELIFDVWEEELEQMKTIVEEGMQHA----MKLRVPLIA 849 Query: 965 NIKVSNNW 972 + W Sbjct: 850 EANIGRTW 857 Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 114/363 (31%), Positives = 186/363 (51%), Gaps = 21/363 (5%) Query: 7 LFLVDGSSFIYRAFYATPL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L L+DG+S ++RA+YAT + + +G+P NA+ GF M+ K L +++ V Sbjct: 4 LLLIDGNSMLFRAYYATVYGRMMKTSNGVPTNAVYGFITMINKALSMVEPDAVL----VA 59 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 +D TFR+E Y +YK R ++ + L+ Q P+ R A+G+ E +G EADDII + Sbjct: 60 WDAGKPTFRHETYTEYKGTRKELDQELIVQFPIAREFLDAYGMKRYECEGIEADDIIGS- 118 Query: 125 TYIAEK-EGFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPPEKM 179 +A+K + I+S+D+DL+QL+ PTT +Y + E +D + + GI P ++ Sbjct: 119 --MAKKYPDVEIHILSSDRDLLQLIDPTTDVYLMKKGITEMEVMDEAKLKESMGIVPSQI 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD+ DNIPG+ GIG KTA LL EY ++N+ + IK K +E + E Sbjct: 177 IDLKALMGDTADNIPGVKGIGEKTALKLLSEYETVDNVYAHIDEIK-GKLKEKLETDKEK 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LS+ L ++ D I +P ++L++ G L F E + T + Sbjct: 236 AFLSKYLATIKVDAEIPLPFADMMLKEP-GEELHDFFVKYEMKSFVKETMDTREVKKEGS 294 Query: 300 EPVVLDIN-TTENKGIAIETEIDRDTTIKTSQFS---SLSDQTSKIN-SEQTPQKLFLER 354 +V I+ G + +D ++ + SL D+T I S+ FLE Sbjct: 295 RTIVKQISPDLLQDGALVYANVDNESYYDAQLYGFAISLQDRTEYIELSDALQDTAFLEW 354 Query: 355 LQK 357 L++ Sbjct: 355 LKE 357 >gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] Length = 843 Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 171/420 (40%), Positives = 259/420 (61%), Gaps = 14/420 (3%) Query: 558 PKLIVE----KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENI 613 P+L E L +Y ++ P+ DV+++ME G+ +D L++V EI + + LEE I Sbjct: 424 PRLDAELREMGLSRLYYEVELPLADVLAEMERVGMPVDARTLEEVGREIERRIAELEEAI 483 Query: 614 YDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE 673 ++ G FN+ SPKQL ++LF +L P +TKTG + T A+ L+Q+ ++PI + I+ Sbjct: 484 FEDVGHPFNIGSPKQLSEVLFEELGLPPVRRTKTG-YSTDAKVLQQLAL-EHPIAERIIA 541 Query: 674 WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI 733 WR+L+K+K TY + L + + R+HT + +T TGR++S PNLQNIP++T+ G +I Sbjct: 542 WRELAKLKGTYVEGLLKLVGE-DGRIHTTLNQTTTATGRISSDSPNLQNIPVRTETGMRI 600 Query: 734 RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 R AF + P + L+ ADYSQIELRILAH+++ L + F+N DIH AAE+F V E V Sbjct: 601 RDAFTASPGRLLVVADYSQIELRILAHMSREPALVEAFKNGEDIHTRTAAEVFDVRPESV 660 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQL-RIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852 +P++RR AK +NF I+YGIS + LAT+L + +EA YI+RYF R P + E+I K+ Sbjct: 661 TPELRRRAKMVNFGILYGISGYGLATRLGNVHPAEADRYIQRYFERHPRVTEFIRKSLAE 720 Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912 + GY T+FGRR + E+ + ++R + ER A NA +QGSAADI + AM+ + L Sbjct: 721 AEELGYATTLFGRRRYVPELRNKNKNVRKLGERIAFNARVQGSAADIIKVAMVDLAPRL- 779 Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 L ML+Q+HDELVF+V + + + + M A +L PL+V +K W Sbjct: 780 -GPLGADMLMQVHDELVFDVDRDRVEEVAALAAERMVAAY----DLDPPLEVEVKAGERW 834 Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 106/300 (35%), Positives = 158/300 (52%), Gaps = 9/300 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 ++L+DG S +YRAFYA P GLP NA+ GF +M+ KLL + + I V++ Sbjct: 13 RVYLIDGYSLLYRAFYALPQSIATSSGLPTNALYGFTSMVLKLLDSDEELGIG----VVW 68 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D FR E+YP+YKA R +PE L QL + +A IP + ++GFEADD++AT + Sbjct: 69 DGGLPAFRTEVYPEYKAQRSAMPEELRVQLDHLDEILEAMNIPVVRVEGFEADDVLATVS 128 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKI-DIEHVIKKWGIPPEKMVC 181 EG + I++ D+D MQLV + T V E K+ V++++G+ PE++ Sbjct: 129 RRL-PEGVELYIVTGDQDAMQLVDGRVRVLRTTRGVSETKVYGRREVMEEYGVSPEQIPD 187 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 +AL GD DNIPG+ GIG K+AA LL+ +G+LE + ++ + R + E E A Sbjct: 188 YKALVGDPSDNIPGVRGIGPKSAAALLRRFGSLEALYERLEEVEARGTRRKLEEGRENAF 247 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 LS +L +R D P+ E L L+ EF L R+A +P Sbjct: 248 LSLRLARMRFDAPVQFDPERLRFRGVAPGVRDVLLRRYEFRSLEPRIAGLPVSGGGRPQP 307 >gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511] gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511] Length = 904 Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 188/518 (36%), Positives = 295/518 (56%), Gaps = 21/518 (4%) Query: 465 IGHNIKYDKLVLHRYGISMRGFE---DIMLMSYVLDSG-RSSHDIASIAQKWLSYTRKEI 520 +G N+K+D +L+ + + M E D M+++++LD G R DI +AQK+L Y K Sbjct: 398 VGQNLKFDLSLLYSH-LEMEPIEPEADTMILAWLLDPGSRVGLDI--LAQKFLGYQMKSF 454 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDKPMI 577 ++ K ++ + +A E++ QL+ L K +E LL + ++ P I Sbjct: 455 KETVKKGEDFSSVALEEAAFYAAEDAWATRQLYFRLTELFKKGGLEHLLKEAKEVEFPFI 514 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 +V+ ME GI++D L+ + E+S L L + I+ L+G +FN+ S +QLG++LF L Sbjct: 515 NVLIAMERLGIRVDTKHLRSLKEELSAELARLTQEIHTLAGTEFNIKSTQQLGNVLFGTL 574 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 G KTKTG + T L + G++PI++ ILE+R+ K+ STY D L K + Sbjct: 575 GLKGGKKTKTG-YSTNESVLRNL-IGEHPIVEKILEYREHQKMLSTYVDPLLKLAEKDPE 632 Query: 698 -RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 R+HT + T TGRLAS +PNLQNIP++++LG+++RRAF++ +L S DYSQIELR Sbjct: 633 GRIHTTFVQTGTATGRLASKDPNLQNIPVRSELGRRVRRAFVAQEGFRLASIDYSQIELR 692 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +LAH + L + FE DIH A ++FG + + R AK+INF ++YG+ + Sbjct: 693 LLAHFSGDAALREAFEKGEDIHMATAIKLFG---PEEAAAKRNFAKSINFGLLYGMGSRK 749 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 LA +L I EA + I+ YF FP + Y+E+ + ++ GYVET+ RR +D Sbjct: 750 LADELGITTKEAKEIIEAYFAAFPTVRSYLEQIQQQAKEQGYVETLLRRRRVFD-YEGAS 808 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 ++ R A+N QGSAAD+ + AM+ + + + L +MLLQIHDEL+FE+PE + Sbjct: 809 GMMKAAILREAVNTVFQGSAADLIKLAMLDIDTMIREEGLEARMLLQIHDELIFEIPEAQ 868 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + H+ME P L VPLK ++ + +W E Sbjct: 869 AEETAARFRHTMEH-IYP---LEVPLKCSVSLGGSWDE 902 Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 101/268 (37%), Positives = 147/268 (54%), Gaps = 13/268 (4%) Query: 28 RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87 + +G P + GF N + +L +K+ + D TFR EIYP+YKANRP Sbjct: 24 KNSEGFPTGLLTGFVNFIHQL----QKDHATDYIVFAMDSEGPTFRKEIYPEYKANRPAP 79 Query: 88 PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147 PE L+ QLP+ + G + +EADD+IAT T +++G I+S+DKDL QL Sbjct: 80 PEDLMQQLPVAIRWVEMMGFANLSKARYEADDVIATLTKCGKEQGIVAKIVSSDKDLYQL 139 Query: 148 VSPTTC-LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206 + +YD VK++ +D + ++K+G+ P V QAL GDS DN+PG+PGIG KTA+ Sbjct: 140 LDDDRVYIYDWVKKKAVDEKGCLEKFGVHPRDFVDFQALIGDSSDNVPGVPGIGPKTASK 199 Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILED 266 L+ E+ LEN+ + + R+ ++E+ E A LSR+LV L DV + LE ED Sbjct: 200 LINEFHTLENLYAHIEEAGTPRIRKLLIEHEEQAFLSRELVRLVDDVFDSCALEEYAFED 259 Query: 267 CNGPRLISFLKAL--EFTKLINRVATTY 292 N +L AL EF K R A + Sbjct: 260 RN------YLAALKEEFEKYEMRQALRW 281 >gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58] gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58] Length = 878 Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 199/590 (33%), Positives = 320/590 (54%), Gaps = 31/590 (5%) Query: 395 ITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTL-------TK 447 + D + +F K +AIA + + + + L++ S G + + Sbjct: 309 LIDVLQSFEKKSLAIAAAYVGKH----------LVSLALQGIALSDGNRVVYVELKQRPE 358 Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG-RSSHDI 505 E+L L KFF E G+NIK D L GI + D+ L +++ G R+S Sbjct: 359 ELLEILCKFFSREDLSFYGYNIKRDLHALRNAGIVIYNVSCDLALAEHLIHGGARTSFQS 418 Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 ++ W + + + + ++P+ ++ ++ +++ E ++ Q+ L +L ++L Sbjct: 419 LLVSHGWAAVAARYVKEWGHHALPLVQLPENP-EKYFGELVALLPQIKESLLEELQKKQL 477 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 V+ L+ P+ V+ ME G+ +D L + + ++L L E IY L+GE FN+ S Sbjct: 478 TDVFFNLEMPLEHVLFSMERNGMPLDSKKLVSLEHSLEQDLAILTEEIYTLAGEPFNIKS 537 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQL +IL+ KL K K+ T A+ LE + ++ II+ +L +R L K+ STY Sbjct: 538 PKQLANILYNKLGITPLDKAKS----TRAEVLEALR-EEHKIIEKLLMFRALEKLLSTYV 592 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKK 744 +LP + +TQR+H + T TGRLA +PNLQNIP ++ G +R AF+ P T Sbjct: 593 KALPRQVAPQTQRIHATFEQMGTATGRLACRDPNLQNIPKRSSRGLSLREAFLVPCETVS 652 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 ++ADYSQIELR+LAH+++ L F DIH A+++F V +++V+ Q R +AKT+ Sbjct: 653 FLAADYSQIELRLLAHLSQDEVLLHAFHQGEDIHAFTASQVFSVPLDQVTKQQRMYAKTV 712 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF IIYG + L+ L+IP SEA + I+ YF R+ G+ ++E+T + V T+ G Sbjct: 713 NFGIIYGQQAYGLSKILKIPLSEAQELIQAYFERYSGVARFVEETIAAASHDLKVTTMLG 772 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 R D + IR + R A+N IQGSAA++ + AM+ + K ++D KL ++MLLQI Sbjct: 773 RERVIDNWDE-HPGIRASSGRLAVNTRIQGSAAELIKCAMLEISKEIQDRKLQSRMLLQI 831 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL+FEVP+ E+ ++ ME A + L VPL VNI + NW E Sbjct: 832 HDELIFEVPDGEMQEMCALVQEKMEAA----MTLTVPLVVNILIGKNWAE 877 Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 102/285 (35%), Positives = 155/285 (54%), Gaps = 10/285 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LF++D S F++RA++A P + + G + GF + KL+ KE + +FD Sbjct: 12 LFVLDASGFVFRAYFALPEM-KTPLGERAQVVFGFVRSINKLI----KEFSPQYMVAVFD 66 Query: 67 YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P R EIY +YK+NR K E L Q+ LV+ G+ IE+ EADD+IA+ T Sbjct: 67 GPNNKQSRQEIYTEYKSNREKKVEDLSIQIALVKEYCVLRGLAHIEVDSVEADDVIASIT 126 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184 A EG+ V I + DKDL+QL P L++ KE+ I E V++++G+PP+ + A Sbjct: 127 TRAVHEGYDVCICTADKDLLQLAGPQVGLWNPWKEQGIFGEEEVLERYGVPPKCIPDYLA 186 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD+ DNIPG+ G G K AA LLQ++G++E IL N IK + + E E +LS+ Sbjct: 187 LVGDTSDNIPGVKGCGPKKAAALLQQFGSVEGILENLEHIK-GSNQTMLKEQKEILQLSK 245 Query: 245 KLVMLRTDVPITIPLEHLILED--CNGPRLISFLKALEFTKLINR 287 KL +L +V + + L + + +L F F L++R Sbjct: 246 KLAVLDHNVSLPCSIASLTFPNLSVDEEKLQVFYMQQGFKTLVHR 290 >gi|139437104|ref|ZP_01771264.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC 25986] gi|133776751|gb|EBA40571.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC 25986] Length = 916 Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 174/490 (35%), Positives = 273/490 (55%), Gaps = 17/490 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D ++ +Y+LDS RS D A +A +L + + A + Sbjct: 439 DTVVAAYLLDSDRSEFDEAYLADTYLQMALPAACGAEGAG--------EDAPAPAARTAA 490 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 + L L LR + E +V++ ++ P++ V+++ME G+ +D D L +S ++ + Sbjct: 491 LTLALVAPLRECMARENAANVFDGIEMPLVPVLAKMERAGMLVDPDRLHSLSEGLATQIT 550 Query: 608 SLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGD 664 +E +I DL+G E FN+ SP QL +LF + P+ KTK G + T A+ L + D Sbjct: 551 EVERSIRDLAGDETFNIGSPMQLSHVLFDVMGLPTKGLKKTKRGYYSTNAKVLSDL-ARD 609 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 + I++ IL+WR+ SKIKSTY D+L + + RVHT Y+ T TGRL+S +PNLQNIP Sbjct: 610 HEIVRLILDWREKSKIKSTYLDTL-GPLRRGDGRVHTTYNQTITATGRLSSSDPNLQNIP 668 Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 +++LG+ ++ AF + ++ DYSQIELR+LAH++ L + F D H AA Sbjct: 669 TRSELGRTVKTAFSAGEGSVFLAVDYSQIELRLLAHLSGDEHLVRAFNEGEDFHAETAAR 728 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +FGV + +V+P +R AK +NF I+YG + L+ L I +EA D I RY+ +PG+ Sbjct: 729 VFGVPVSEVTPDLRSRAKAVNFGIVYGQQAYGLSQSLHISMAEARDMIDRYYEAYPGVRT 788 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 +++ +Q GY ET++GRR H E+ + +R ER A+N P+QG+AADI + AM Sbjct: 789 FLDNVVARAKQTGYAETMYGRRRHIPELKAKNPQLRGFGERTAMNHPMQGTAADIIKIAM 848 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 V + LE+ A M+LQ+HDEL FE P +E+ + ++ ME ++LRVPL Sbjct: 849 ARVSRRLEEEGFAAHMILQVHDELDFECPVDEVERLTAMVRDVMEHV----VDLRVPLIA 904 Query: 965 NIKVSNNWQE 974 W + Sbjct: 905 EASTGITWAD 914 Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 150/295 (50%), Gaps = 20/295 (6%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K ++DG+S ++RAF+A P DG P NAI GF NM K++ + + Sbjct: 4 KRRTFAVIDGNSLMHRAFHAVPPTMNAPDGRPTNAIFGFLNMFLKMIDAFNPDGVV---- 59 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD R E+ P YKA RP + L Q P+++ A +P ++ +G+E DDI+ Sbjct: 60 VAFDKGKPRVRMEMLPQYKAQRPPMDPDLHAQFPMIKELLAALNVPILQSEGWEGDDILG 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHVIKKW 172 T + E+ G + +++ D+D+ QLV+ + T K E D+ H Sbjct: 120 TMARLGEEAGCDMLLVTGDRDMYQLVTEHVNVVSTRKGLSDVAIMTPESVDDLYH----- 174 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 GI P + L GD+ DNIPG+PGIG K A+ L+ +YG+L+ ++ +A +K K EN Sbjct: 175 GITPALVPDFYGLKGDTSDNIPGVPGIGPKKASALIAQYGSLDEVIAHADEVKGKM-GEN 233 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 + + + A LSRK+ +RTD P+ + + + + + L L T + NR Sbjct: 234 LRAHIDDALLSRKVATIRTDAPVELDFDETSFPAFSADEVSAALGTLGITAMQNR 288 >gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 874 Score = 317 bits (811), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 188/491 (38%), Positives = 287/491 (58%), Gaps = 25/491 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L Y+L S D+A A +L T S + P + +A+ + Sbjct: 403 DLELADYLLHPEESRRDMARAAFAFLGDT-----TSAEGLSP---------EAYAVHEAL 448 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 + +L ++ +L ++L+H+Y ++ P++ V++ ME TG+ +++ L+ A ++ + Sbjct: 449 LSARLQPIMETELAAQELMHLYRTVELPLVPVLAAMEQTGVCVNRAALEHERAAATERID 508 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDN 665 +L I+ L+G +FN+SSPKQLG+ILF +L G KTKTG + T A+ LE + + Sbjct: 509 ALAREIHTLAGTEFNISSPKQLGEILFEQLGLGDGKVKKTKTG-YSTNAETLEGLR-DQH 566 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 PII +L +R +K++STY D + I T RVHT ++ T TGRL+S +PNLQNIP+ Sbjct: 567 PIIDKVLTYRMWTKLRSTYLDGIGALIRPATGRVHTSFNQTVTATGRLSSSDPNLQNIPV 626 Query: 726 KTDLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 +T+ G+ +R A +P L+SADYSQIELRILAH++ L F DIH AA Sbjct: 627 RTEEGRAVR-ALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFRQGQDIHARTAA 685 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 E+FGV ++ V+P+ RR AK +NF I+YG+S F LA L I R EA YI RYF R+ G+ Sbjct: 686 EVFGVPLDAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREAGGYIDRYFERYHGVR 745 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 +++K NGYV T++GRR + S R+ ER A+N PIQG+AAD+ + A Sbjct: 746 TFLDKIVADAHANGYVTTLYGRRRALPALASRNYMQRSFAERMAMNTPIQGTAADLIKIA 805 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + +L+ + +++LLQ+HDELV EV EE T ++++ +M A L VPL Sbjct: 806 MVRAYDALQAAGVKSRILLQVHDELVLEVTTEETETVTELLRTAMSGAA----ELAVPLA 861 Query: 964 VNIKVSNNWQE 974 V++ NW E Sbjct: 862 VDVHSGKNWAE 872 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 97/250 (38%), Positives = 142/250 (56%), Gaps = 9/250 (3%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++DGSS +RAFYA L G+ NA+ GF ML KLL KE + + FD Sbjct: 8 VIDGSSLFFRAFYALQLPPNAR-GIHTNAVHGFAMMLVKLL----KELSPTQIVIAFDKS 62 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR +YPDYK R K PE L+ Q+PL++ +A GI +E+ +EADDII T A Sbjct: 63 RTTFRTALYPDYKGTRDKTPEELIAQIPLLKELAEALGISFLELDDYEADDIIGTLAVQA 122 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----EEKIDIEHVIKKWGIPPEKMVCLQA 184 EG +I+ D+D +QL+ P + T K + D +++G PP +++ ++ Sbjct: 123 AAEGVETRVITGDRDALQLIRPQLTVLLTKKGISETKAYDTAIFEEEYGFPPIRLIDMKG 182 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS DNIPG+PG+G KTA LL Y ++EN+L +A+ + KK ++ +Y A LS+ Sbjct: 183 LMGDSSDNIPGVPGVGPKTATKLLLAYESIENVLDHAAEVSGKKLSTSLAKYRAQALLSK 242 Query: 245 KLVMLRTDVP 254 +L + VP Sbjct: 243 QLATIECHVP 252 >gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251] gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251] Length = 902 Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 189/520 (36%), Positives = 299/520 (57%), Gaps = 25/520 (4%) Query: 465 IGHNIKYDKLVLHRYGISMRG------FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518 +GHNIK+D LH + I G F D M+++++++ S+ + +++K L + Sbjct: 396 VGHNIKFD---LH-FVIRFLGEGELDIFADSMILAWLINP-ESALSLDKLSEKLLEHKMI 450 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI---VEKLLHVYERLDKP 575 +S K ++ + +A E++ + L+L+ L L E L+ + ++ P Sbjct: 451 TFKESVKKGETFASVALEEACNYAAEDAYITLRLYYLFLEMLKDQGAEHLIEEAKEVEFP 510 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 I + +ME+ GI+++ L+Q AE +L L + IY+L+ +FN++S +QLG++LF Sbjct: 511 FIKTLLKMEMHGIELNSLFLEQFLAEAKDSLSELTKKIYELASLEFNINSTQQLGNVLFE 570 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK- 694 +L P+ KTKTG + T + L + G++ II +LE+R++ K+ STY + L + Sbjct: 571 QLGLPTSKKTKTG-YSTDEKVLNSL-LGEHEIIPYLLEYREVYKLYSTYIEPLLKLSQQD 628 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754 + R+HT + T TGRL+S PNLQNIP +T LG KIR AF++P KKLI DYSQIE Sbjct: 629 KESRIHTSFVQTGTTTGRLSSKNPNLQNIPTRTALGTKIREAFVAPEGKKLIGIDYSQIE 688 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LR+LAH + L + F DIH A +FG E+ +P R AKT+NF ++YG+ Sbjct: 689 LRLLAHFTQDRVLVEAFMQDKDIHMQTAIALFG---EEDAPLKRNVAKTVNFGLLYGMGQ 745 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 +L+ L+I +EA + I+RYF FP + Y +F ++ GYVET+ RR ++D S Sbjct: 746 KKLSETLKITTAEAKEIIERYFSSFPSVKSYFRSIVDFSKEAGYVETLLKRRRYFD-YES 804 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 R ER A+N+ QGSA+DI + +M +HK +ED KL KMLLQIHDEL+FEV Sbjct: 805 ASPMFRAAYEREAVNSIFQGSASDIIKLSMNKIHKLIEDEKLNAKMLLQIHDELIFEVD- 863 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 T+ ++I+ + + L +PLK ++K+ + W E Sbjct: 864 ---TSEAEILGEKFKNIMQNIMPLNIPLKASMKIGDKWSE 900 Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 94/265 (35%), Positives = 140/265 (52%), Gaps = 6/265 (2%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D F +R+FYA P + G P + GF N + L +K+ + + D Sbjct: 7 IIDTFGFFFRSFYALPQHLKNSQGFPTGLLTGFTNFISTL----QKQHDSDYIVFAIDTK 62 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 +FR EI P+YKANR P+ L QLP+ G + G+EADD+IAT A Sbjct: 63 GDSFRKEIDPNYKANRQPPPQELSMQLPIAIEWIDKMGYKTLGFDGYEADDVIATVVRFA 122 Query: 129 EKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 +++ + V ++S DKDL QL+ L D +K++ +D + KK+GI P++ + Q++ G Sbjct: 123 KEKSYNVRVVSHDKDLFQLIDDGRVVLVDAIKKQVMDEDECFKKYGISPKQFIDYQSILG 182 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247 DS DNIPG+ GIG A LL EY L+NI N IK ++ +LE+ E A +S+KLV Sbjct: 183 DSADNIPGVKGIGKVGAEKLLIEYETLDNIYANIENIKPLGIQKKLLEFKEQAYMSKKLV 242 Query: 248 MLRTDVPITIPLEHLILEDCNGPRL 272 L V + E + D P L Sbjct: 243 TLSCSVFESFDFEEFKM-DIENPFL 266 >gi|111224005|ref|YP_714799.1| DNA polymerase I [Frankia alni ACN14a] gi|111151537|emb|CAJ63255.1| DNA polymerase I [Frankia alni ACN14a] Length = 884 Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 179/533 (33%), Positives = 291/533 (54%), Gaps = 11/533 (2%) Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSH 503 LT L+ L + + H K H++K L L G+++ G D L +Y+ G+ S Sbjct: 357 LTPADLAALGGWLADAHQPKAAHDVKGPMLALAELGLTLAGVTSDTALAAYLALPGQRSF 416 Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 D+A + ++L + + + + +D +++ + L+L L L Sbjct: 417 DLADLVARYL-HRDLAVEPAGNGQLTLDGSGEAEESHADAVRARACLELADELDADLERR 475 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 + ++ P++ V++ ME GI DQD L ++ + ++ +++ G FNL Sbjct: 476 SAAVLLRDMELPLVTVLAGMERAGIAADQDHLTELQKHYGGEVTAVAAQAHEIVGRTFNL 535 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKS 682 SPKQL ILF L P K KTG + T A L + D+P++ +L R ++++K Sbjct: 536 GSPKQLQQILFDDLGLPKTKKIKTG-YTTDADALAWLAVQSDHPLLPVLLRHRDVARLK- 593 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPP 741 T DSL I+ R+HT ++ TGRL+S +PNLQNIPI+T G++IRRAF+ P Sbjct: 594 TVVDSLLPMIDD-AGRIHTTFNQMIAATGRLSSTDPNLQNIPIRTAEGRQIRRAFVVGPG 652 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 + L++ADYSQIE+RI+AH++ L + F + D+H VAAE FG+ + +V P++RR Sbjct: 653 YETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLHTFVAAEAFGLPVSEVDPELRRRI 712 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +++ + YG+S F LA+QL I EA +++ YF RF G+ +++ R++GY ET Sbjct: 713 KAMSYGLAYGLSAFGLASQLGIAPDEAREHMDAYFGRFGGVRDFLRGVVERARRDGYTET 772 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 + GRR + ++ S + R + ER A+NAPIQGSAADI + AM+ V ++L A+++L Sbjct: 773 MLGRRRYLPDLTSDNAQRRQMAERMALNAPIQGSAADIIKIAMLGVDRALRAGGHASRLL 832 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LQ+HDELV E+ E ++ M A + VPL V++ W + Sbjct: 833 LQVHDELVLEIAPGEYDAVEALVRAEMTSA----YTMSVPLDVSVGAGRTWDD 881 Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/286 (32%), Positives = 141/286 (49%), Gaps = 10/286 (3%) Query: 8 FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+DG S YRAFYA P+ + G P NA+ GF +ML +L++ + +H AV +D Sbjct: 1 MLLDGHSLAYRAFYALPVENFSTTTGQPTNAVYGFTSMLINVLRDEKP----THVAVAWD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+ Y +YKA R + P + Q+ L+ A +P + G+EADD+IAT Sbjct: 57 LPTPTFRHTQYAEYKAGRSETPADFVGQVSLIHQVCDALAVPGVSAAGYEADDVIATLAT 116 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 G V +++ D+D +QLV + T K + + V K+G+ P + Sbjct: 117 AGAAVGMDVLVVTGDRDALQLVDERVTVLMTRKGISDMTRFTPDEVQAKYGLSPVQYPDF 176 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD DN+P +PG+G KTA +Q++G+L ++ A I K A R Sbjct: 177 AALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAELVDRADEIGGKTGASLRAHLASVIR- 235 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +R L L DVP+ + + L L + + L+F L R+ Sbjct: 236 NRSLTELSRDVPLPVGPDELRLRPWDREAVHQLFDTLQFRVLRERL 281 >gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 931 Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 159/410 (38%), Positives = 255/410 (62%), Gaps = 2/410 (0%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L + E L+ P+I V++ ME+ GI+I++ AE+ K L L + +Y ++G +FN+ Sbjct: 522 LSALMEELEMPLIPVLADMELRGIRINRAEFSGFLAEVQKELDRLTQEVYAVAGGQFNIR 581 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 S +QLG++LF L +G+KTK GQ T+ LE++ G +P+I ILE+R+L K++STY Sbjct: 582 SSQQLGELLFGTLGLKAGSKTKGGQASTSQAVLEKL-AGKHPVIDTILEYRKLEKLRSTY 640 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 + LP + + R+HT ++ +T TGRL+S +PNLQNIP++ +GQ++RR F + P K Sbjct: 641 LEPLP-RLAQENDRIHTTFNQLATATGRLSSSQPNLQNIPVRGPMGQRMRRCFTAAPGNK 699 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L++ADYSQIELR+LAH++ L + F + DIH A ++ V V+P RR+AKTI Sbjct: 700 LVAADYSQIELRVLAHVSADPTLIESFTRNEDIHSRTAGLLYDVTAADVTPDQRRNAKTI 759 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF +IYG+ P +LA +L++ +EA ++I+RYF + + E+ + + R++G+V T+ G Sbjct: 760 NFGLIYGMGPQKLAQELKVTLNEAKEFIERYFSKLSHLKEFYDNVEQSAREHGFVTTLAG 819 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR EI+S + +R+ R AIN +QGSAADI + AM+ +L ++LQ+ Sbjct: 820 RRRLLPEIHSDNNQLRSQARRQAINTVVQGSAADIIKIAMLKAAADETLQQLNAALILQV 879 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL+ E P++ A++ + M L VPL V+ + +NW + Sbjct: 880 HDELLLEAPQDAAEAAAKRLADIMSSVRPGGAALDVPLAVDYGIGDNWGQ 929 Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 98/284 (34%), Positives = 151/284 (53%), Gaps = 9/284 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++L+DGS+FI+R FYA + R DGLP NA+ +L KLL +E ++ A D Sbjct: 80 VYLIDGSAFIFRGFYAFQNMQRS-DGLPTNALFIVLRILLKLL----REEQPAYAAFFMD 134 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y YKANR PE L+ QL +R ++ GIP G EADD IA+ Sbjct: 135 GKGPTFRHALYDQYKANRSATPEPLVQQLDPIRRGVRSLGIPLEVSDGCEADDCIASLAA 194 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184 + E V I+ DKDL Q + L+D K+EK+ D+ ++ G+ P + QA Sbjct: 195 KFKSE-RPVIIVGADKDLKQCIDDNVYLWDPGAKQEKLLDLAGFTEETGLSPSQWPDFQA 253 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 + GDS DNIPG+PG+G KTAA + E+ LE I N +K +++ ++ + L R Sbjct: 254 VIGDSSDNIPGVPGVGPKTAAQIFAEFPTLEAIQENEKALKPGVQKKFAGQW-DNIYLYR 312 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +L L T ++ L+ + ++ + +FL+ E L+ + Sbjct: 313 RLTTLDTGRCTSLALKDMTVQSVDADNAAAFLREFELRTLLREL 356 >gi|145640969|ref|ZP_01796551.1| DNA polymerase I [Haemophilus influenzae R3021] gi|145274483|gb|EDK14347.1| DNA polymerase I [Haemophilus influenzae 22.4-21] Length = 635 Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 215/648 (33%), Positives = 342/648 (52%), Gaps = 66/648 (10%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML +L+ + +H AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKRLISQVQ----PTHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 ALQASSLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKP 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS L ++TDV + + + L+L + +LI + EF + +N V D Sbjct: 242 NADLSYTLATIKTDVELNVTTDQLLLGESQKDQLIEYFARYEFKRWLNEVMNGADSIT-- 299 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 TTE +K +Q+ + S + E TP ++Q Sbjct: 300 --------QTTEQP-------------VKINQYQATSQDQRAV--ENTP------KIQ-- 328 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 I+ Y ++ D+ +W++KL T + TD++D + + I+ + L+ + Sbjct: 329 ----IDRTKYETLLTQADLTRWIEKLNTAKLIAVDTETDSLDYMSANLVGISFA-LENGE 383 Query: 419 DTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHR 478 ++ ++D + T + ST L+ +K EN + KIG NIK+D+ + R Sbjct: 384 AAYLPLQLDYLD-APKTLEKSTA--------LAAIKPILENPNIHKIGQNIKFDESIFAR 434 Query: 479 YGISMRGFE-DIMLMSYVLDS-GRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKI 533 +GI ++G E D ML+SY L+S GR H++ +A+++L + + + KS + ++I Sbjct: 435 HGIELQGVEFDTMLLSYTLNSTGR--HNMDDLAKRYLGHETIAFESLAGKGKSQLTFNQI 492 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 Q E+A E+++V ++L L KL E L+ +Y+ ++ P++ V+S+ME TG+ ID Sbjct: 493 PLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDS 552 Query: 593 DLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 D L S EI+ L +LE+ Y L+G+ FNL+S KQL +ILF KL P Sbjct: 553 DALFIQSNEIATRLTALEKQAYALAGQPFNLASTKQLQEILFDKLGLP 600 >gi|308177719|ref|YP_003917125.1| DNA polymerase I [Arthrobacter arilaitensis Re117] gi|307745182|emb|CBT76154.1| DNA polymerase I [Arthrobacter arilaitensis Re117] Length = 870 Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 193/589 (32%), Positives = 319/589 (54%), Gaps = 29/589 (4%) Query: 393 KIITDTMDAFHSKPIAIAISTLDQK--DDTSFK-VETIFIDLSVHTSQDSTGKNTLTKEI 449 K + D ++A PIAI + +D + F+ + ++DLS D +N L + Sbjct: 301 KALRDFLEAGKGAPIAIQPAVVDGQAVGLALFRGAQAAWLDLS---GLDEAAENVLAQ-- 355 Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMS-YVLDSGRSSHDIASI 508 F + KI H+ K +L G+ + G D L+S Y++ R SHD+ + Sbjct: 356 ------FLADAAAPKIFHDAKATMHLLADRGLKLAGIHDDTLISAYLIQPDRRSHDLVDV 409 Query: 509 AQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 Q L Y + +++K + + +D + E A+ + I L L KL + + Sbjct: 410 VQYHLKYAVP-VHQAKKGELDLGLTAD--LAEPALAQAQAIHDLSAFLATKLAEKHADKL 466 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 ++ P+I V+ +ME G+ +D D L ++ A ++ + + + G + NLSSPKQ Sbjct: 467 AAEMELPLIPVLFEMERAGVAVDVDRLNELRAHFTEQVDQATNDAFAAIGHEVNLSSPKQ 526 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ--INCGDNPIIKNILEWRQLSKIKSTYAD 686 L +LF +L P K KTG + T A+ L + G +P + ++ +R K++ T D Sbjct: 527 LQVVLFEELDLPRTKKIKTG-FTTDAESLADLLVKTG-HPFLVALMAYRDAIKLRQT-VD 583 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKL 745 L ++ R+HT Y+ TGRL+SL PNLQNIP++++ G++IR F + + L Sbjct: 584 GLLKATHE-DGRIHTTYAQTVAATGRLSSLNPNLQNIPVRSEEGRRIRDVFMVGEGYQSL 642 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 ++ DYSQIE+RI+AH+++ L + ++N D+HR V + +F V E+V+ +MR K ++ Sbjct: 643 LTVDYSQIEMRIMAHLSEDEGLIEAYQNGEDLHRYVGSRVFNVEPEEVTSEMRSKVKAMS 702 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 + + YG+S F L+ QL+I EA +K YF RF + Y+ + R++GY ETIFGR Sbjct: 703 YGLAYGLSSFGLSKQLKIGVDEARKLMKDYFDRFGAVRTYLRSVVDQARKDGYTETIFGR 762 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + E+NS +R+I ERAA+NAPIQGSAAD+ + AM+ + + L+ + ++MLLQ+H Sbjct: 763 RRYLPELNSSDRRLRDIAERAALNAPIQGSAADLVKVAMLRIDEELKAGEYKSRMLLQVH 822 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DEL+ E+ E E+ +++ M +A L VPL V V W + Sbjct: 823 DELILEIAEGELEPVQELVTREMGQAA----ELLVPLDVQPGVGRTWHD 867 Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 100/277 (36%), Positives = 151/277 (54%), Gaps = 10/277 (3%) Query: 17 YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75 +RAFYA P + G NA+ GF +ML +++ + +H AV FD TFR+ Sbjct: 3 FRAFYALPAENFATSTGQHTNAVHGFVSMLLTMIRQQKP----THVAVAFDLDTPTFRSL 58 Query: 76 IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135 Y +YK R K PE Q+ L++ +A IP+I ++ FEADDI+AT E+ GF V Sbjct: 59 EYTEYKGGRNKTPEEFYGQIDLIQEVMKAMNIPSITLESFEADDILATLATQGEEAGFNV 118 Query: 136 TIISTDKDLMQLVSPTT-CLYDTVKEEKI---DIEHVIKKWGIPPEKMVCLQALTGDSID 191 ++S D+D QL++ T LY I D + V K+ + PE+ L AL G++ D Sbjct: 119 LVVSGDRDAFQLITDKTLVLYPKKGISDIPPMDADAVEAKYFVRPERYSDLAALVGETAD 178 Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251 N+PG+PG+G KTAA + YG+L IL NA IK K + + E+ + +R+L L+ Sbjct: 179 NLPGVPGVGPKTAAKWINLYGDLAGILENAENIK-GKVGDALREHVDNVTRNRRLNQLKH 237 Query: 252 DVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 D+ + + LE + L+ N + + ALEF L R+ Sbjct: 238 DLELPVTLEQMELQAPNREEIENLFDALEFNTLRKRL 274 >gi|317495649|ref|ZP_07954016.1| DNA polymerase I [Gemella moribillum M424] gi|316914268|gb|EFV35747.1| DNA polymerase I [Gemella moribillum M424] Length = 873 Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 171/425 (40%), Positives = 264/425 (62%), Gaps = 8/425 (1%) Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608 I L + +L E + +Y+ ++ + V++ ME GI + + L+ +S E+ + + Sbjct: 452 IFDLKEIQSARLKEENMDSLYKNIEVKVARVLANMEYEGIHVSKKALEDMSDELDERIKI 511 Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668 LE +I+ L+G +FN++SPKQLG +LF L P KTKTG + T+ + LEQ+ + II Sbjct: 512 LEASIHTLAGSEFNIASPKQLGIVLFEDLGLPPVKKTKTG-YSTSVEVLEQLQHS-HEII 569 Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728 I+E+R L+K+ STYA L I R ++HT Y T TGRL+S+ PNLQNIP + + Sbjct: 570 PLIMEYRVLTKLNSTYAKGLVKDIT-RKGKIHTRYEQTLTQTGRLSSVNPNLQNIPTRIE 628 Query: 729 LGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 G+KIR+AFI ++I S DYSQIELR+LAH+A+ + F + LDIH A+E+ G Sbjct: 629 EGKKIRKAFIPASDDRVILSIDYSQIELRVLAHMAQDKGMIDAFTHDLDIHTKTASEVNG 688 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 V++++V+P MRR AK +NF I+YGIS F L+ L I R A ++I +Y F G+++Y+ Sbjct: 689 VSLDEVTPTMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIDKYLETFSGVNKYMT 748 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 F +++GYVET++ RR EIN+ + ++N R A+N PIQG+AADI + AMI+ Sbjct: 749 DIVEFAKEHGYVETLYNRRRALPEINAKNKIVASLNARLAMNTPIQGTAADIIKLAMINA 808 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 +E K+ K+LLQ+HDEL+F+V ++ + + +V ME+A + L V LK Sbjct: 809 FDYIEKTKVDAKLLLQVHDELIFDVNKDVVDEFTIEMVKIMEEA----VELDVKLKAEAS 864 Query: 968 VSNNW 972 ++W Sbjct: 865 SGSSW 869 Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 123/320 (38%), Positives = 175/320 (54%), Gaps = 15/320 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + + L+DG+S YRAFYA P L K GL N++ GF ML ++L E I +A++ Sbjct: 2 DKIILLDGNSLSYRAFYAMPALQNKS-GLYTNSVYGFTLMLERML-----EDIKPKYALV 55 Query: 65 -FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR++ Y DYK R K P L+ Q VR ++GI E +EADDII + Sbjct: 56 AFDKGKQTFRHKTYQDYKGTRDKTPSELVEQFGYVRELLDSYGIKYEEHFDYEADDIIGS 115 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEK 178 Y +AEK G V IIS DKDL QL S +Y T + +++H + +K+G+ PE+ Sbjct: 116 YAKLAEKAGLEVIIISGDKDLTQLASDNITIYYT-RRGVTEVDHYTPEFINEKYGLSPEQ 174 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD DNIPG+ GIG KTA LL EY +EN+L N I KK +E + E E Sbjct: 175 IIDMKGLMGDKSDNIPGVAGIGEKTAIKLLAEYKTVENVLDNIDNISGKKLKERLAEGKE 234 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS++L + T+VP+ LE L + N + + LEF + ++A D D Sbjct: 235 DALLSKELATIFTEVPVENKLEDLTFSE-NRSKKKELFEKLEFVSFLKKLAENNDVDVDG 293 Query: 299 IEPVVLD-INTTENKGIAIE 317 E L+ IN E ++ E Sbjct: 294 KEEKELEIINADEKTELSFE 313 >gi|229814975|ref|ZP_04445313.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM 13280] gi|229809462|gb|EEP45226.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM 13280] Length = 931 Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 181/490 (36%), Positives = 272/490 (55%), Gaps = 19/490 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D ++ +Y+LDS RS A +A+ +L + + + P D +S A + Sbjct: 456 DTVVAAYLLDSVRSDFTDAYLAETYLHASLPS--AAGEDGAPADAVS------IAARGAW 507 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 + L L L + ++ +++ P++ V++ ME G+ +D L S E+ + Sbjct: 508 LARTLREPLAAALEAQGADAIFTKIEMPLVRVLASMERAGMYVDPARLAAQSDELVGQIQ 567 Query: 608 SLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGD 664 +LE I +L+G E+FNLSSP QL ILF L P+ KT+ G + T A+ LE + + Sbjct: 568 ALEARIRELAGGEEFNLSSPMQLSRILFDTLGLPTAGLKKTQRGYYSTNAKVLEDL-AKN 626 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 + I++ ILE+R+ +KIKSTY D+L + + RVHT Y+ T TGRL+S PNLQNIP Sbjct: 627 HEIVRLILEFREKTKIKSTYLDTL-GPLRRHDGRVHTTYNQTITATGRLSSSSPNLQNIP 685 Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 +++LG ++RAF ++ DYSQIELR+LAH++ L F D H AA Sbjct: 686 TRSELGHAVKRAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVSAFNEGEDFHAETAAR 745 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +FGV +++V+PQ+R AK +NF I+YG + L+ L IP +EA + I YF +PG+ Sbjct: 746 VFGVPVDEVTPQLRSRAKAVNFGIVYGQQAYGLSQTLDIPMAEAREMIDAYFRAYPGVRT 805 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 Y+++T F +Q GY ET++GRR E+ P R ER A+N P+QGSAADI + AM Sbjct: 806 YLDETVTFAKQTGYAETMYGRRRPIPELRIPAQ--RMFGERTAMNHPMQGSAADIIKIAM 863 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 + V + L KM+LQ+HDEL FE P E+ ++ ME LRVPL Sbjct: 864 VHVAERLRAEGFTAKMILQVHDELDFECPVGEVDRLIAMVREEMEGVA----ELRVPLIA 919 Query: 965 NIKVSNNWQE 974 + + W E Sbjct: 920 DASIGETWAE 929 Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 99/320 (30%), Positives = 157/320 (49%), Gaps = 21/320 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++DG+S ++RAF+A P DG P NA+ GF NM K++ + + FD Sbjct: 15 VIDGNSLMHRAFHAVPPTMNAPDGRPTNAVFGFLNMFLKMVDEFTPDGVV----CAFDKG 70 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 R E+ P YKA RP + L Q P+++ + IP +E++G+E DDI+ T Sbjct: 71 RPKVRMEMLPQYKAQRPPMDTNLRAQFPMIKELLASLSIPVVELEGWEGDDILGTLARRG 130 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVK----------EEKIDIEHVIKKWGIPPEK 178 E G + +++ D+D+ QLV+ + T K E D+ H GI PE Sbjct: 131 EAAGCDMYLVTGDRDMYQLVTDHVHVVSTRKGLSDIAIMTPESVDDLYH-----GITPEL 185 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + L GDS DNIPG+PGIG K A+ L+ +YGNL+ ++ +A +K K EN+ + + Sbjct: 186 VPDFYGLKGDSSDNIPGVPGIGPKKASALIAQYGNLDEVIAHADEVK-GKMGENLRAHID 244 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A +SRK+ + TD PI L + + + + L + + NR AA Sbjct: 245 DALISRKIATIMTDAPIECDLTEVAFPAFDAAAVSAALGGIGIMAMQNRFLALLGEGAAA 304 Query: 299 IEPVVLDINTTENKGIAIET 318 + P V + E +A++ Sbjct: 305 V-PTVASLEMPEVLRVALDA 323 >gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1] Length = 845 Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 161/460 (35%), Positives = 278/460 (60%), Gaps = 12/460 (2%) Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNV--ILQLWLL---LRPKLIVEKLLHVYERLDK 574 +L + S I+K+ + EN +L + LL LR + E + + E+++ Sbjct: 390 LLNTSASDYAIEKLCAEYGVHYYSENGEFADLLSIELLIKKLRSVIDKEGMTELLEKIEL 449 Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P+ +V++ ME GI ID+ ++ +++ + ++ +YD +G FN++SPKQLG +LF Sbjct: 450 PLTEVLASMEDIGICIDKQGVEDFGTYLTEMIEETQQMVYDDAGHSFNIASPKQLGTVLF 509 Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 ++ P+ KTK+G + T A+ LE++ D PI+ N+L++RQ +K+ STY L + I Sbjct: 510 EEMGLPAKKKTKSG-YSTNAEVLEELR-NDAPIVDNVLKFRQYTKLNSTYVVGLLDKI-A 566 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754 R+HT++ T TGR++S EPN+QNIP++T+LG ++R+ F++P +KL+ ADYSQIE Sbjct: 567 DDGRIHTWFRQTETRTGRISSTEPNMQNIPVRTELGAQMRKFFVAPKGRKLVDADYSQIE 626 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LR++AH+ + + F + DIH AA++F + V+P+MR AK +NF IIYGI Sbjct: 627 LRVMAHLCGDKNMIEAFNSGEDIHTSTAAQVFDMPSIMVTPEMRSAAKAVNFGIIYGIGA 686 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 F LA + ++A YI Y ++ ++E++E T + ++GYV T+FGR+ E++S Sbjct: 687 FSLAKDIGTSVAKAKKYINDYLAKYEKVNEFMETTVDNAFKDGYVTTMFGRKRRIPELSS 746 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 ++ +R A+N P+QG+AAD+ + AMI+V+ L+ + K++LQ+HDEL+ E E Sbjct: 747 SNKMMQAAGKRIAMNTPVQGTAADLIKIAMINVYNRLKAEDIDAKLILQVHDELILEASE 806 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + A+Q++ M+ ++VPL V++ ++W E Sbjct: 807 SDAEHAAQLLKEEMQNV----YEMKVPLSVDVHTGDSWYE 842 Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 95/290 (32%), Positives = 156/290 (53%), Gaps = 12/290 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L +DG+S + RAFY LLS K+ G+ NAI+GF N+ K + N +++A V FD Sbjct: 3 LLAIDGNSILNRAFYGIKLLSNKN-GVFTNAISGFMNIYLKHINNLAPDAVA----VAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFR++ YKANR +PE L QLPLV+ G+ +E +G+EADDI+ T + Sbjct: 58 LRSPTFRHKAVASYKANRKGMPEELAQQLPLVKELLTLMGVKIVECEGYEADDILGTLSK 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI----EHVIKKWGIPPEKMVCL 182 +++ D+D +QL+ + + + K DI + ++ +G P K++ L Sbjct: 118 ACSDNKDECYVLTGDRDSLQLIDDNVTV--VLAKTKEDIFYTPDRFMEDYGFEPIKLIDL 175 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK-QKKRRENILEYAETAR 241 +AL GDS DNI G+ GIG KTA+ L++EYG +EN+ K + + AE+A+ Sbjct: 176 KALMGDSSDNISGVAGIGEKTASTLIKEYGTIENLYEKYEDSDLTKSVKTKLANGAESAK 235 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 S+ L + + P+ ++H I + + L LE +L+ ++ + Sbjct: 236 ESKWLATIIRNAPVDTDIQHYIPSAPDSAGISRLLTELEMFRLLEKLGIS 285 >gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129] gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae] Length = 899 Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 179/512 (34%), Positives = 296/512 (57%), Gaps = 15/512 (2%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 H K +L G ++ G E D + Y+L G+ ++D+ + Q+ L ++++ Sbjct: 396 HEAKAVFHMLAGRGYTLNGIEHDTAIAGYLLRPGQRTYDLKDVYQRHL---QRQLGGGSS 452 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 S + + QE ++++ IL+L L +L +Y ++ P++ V+++ME Sbjct: 453 ESGQLSLLDAPDAQE-LVDSAVAILELSKSLTAQLQAIDAYELYREMELPLVGVLARMEA 511 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGAK 644 TGI +D L++ + + E +L+G E NLSSPKQL +LF L P K Sbjct: 512 TGICVDVATLREQRDIFVEQVKEEESAARELAGDETLNLSSPKQLQVVLFDTLGLPKTKK 571 Query: 645 TKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 TKTG + T A+++E + + +P + ++L R+ K+K+T D L + R+HT + Sbjct: 572 TKTG-YSTAAKEIESLAVKNPHPFLDHLLAHREFQKMKTTL-DGLIKAVGD-DGRIHTTF 628 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762 + TGRL+S EPNLQNIP++T G+KIR AF+ K L++ADYSQIE+R++AH++ Sbjct: 629 NQTVASTGRLSSTEPNLQNIPVRTPAGRKIRSAFVVGQGYKSLLTADYSQIEMRVMAHLS 688 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L + ++ D+H V +++F V +++V+P++RR K +++ ++YG+S F L+ QL Sbjct: 689 EDPGLIEAYQTGEDLHNFVGSKVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLN 748 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IP EA ++ YF RF G+ Y+++ R++G+ T+FGRR + E++S R Sbjct: 749 IPAGEAKVIMESYFERFGGVKRYLDQVVEQARKDGFTSTLFGRRRYLPELSSDNRVAREN 808 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ERAA+NAPIQG+AADI + AM+ V L +++LLQ+HDELV EV E Q Sbjct: 809 AERAALNAPIQGTAADIIKIAMLRVDARLTAENCQSRVLLQVHDELVLEVASGEQEKVQQ 868 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ M+ A I+LRVPL+V+ V NW+E Sbjct: 869 LVEEEMDAA----ISLRVPLEVSAGVGTNWEE 896 Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 102/296 (34%), Positives = 152/296 (51%), Gaps = 11/296 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 N L L+DG S +RAFYA P + G NA+ GF +ML LL E +H AV Sbjct: 16 NRLMLIDGHSMAFRAFYALPAENFSTSGGQATNAVYGFLSMLSSLL----VEEKPTHVAV 71 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E++P+YKA R P Q+ +++ + GI +E + FEADDIIAT Sbjct: 72 AFDVGRQTFRTEMFPEYKAQREAAPPEFKGQVEIIKEVLETLGITTLEKENFEADDIIAT 131 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 A GF I++ D+D QLV+ +T + ++ + E V +K+G+ P + Sbjct: 132 LATAAGPLGFDTYIVTGDRDSFQLVNESTTVLYPMRGVSVLHRFTPEAVEEKYGLTPVQY 191 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 AL GD DN+P IPG+G KTA + +YGNL+++L +A IK K + E + Sbjct: 192 PDFAALRGDPSDNLPNIPGVGEKTATKWIVQYGNLDSLLAHADEIKGKAGN-SFRERLDQ 250 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDC 294 R++R L + D+ + + L + + + S LEF + L +RV D Sbjct: 251 VRMNRTLTEMIKDLELPYAPDQLERKPADASAIASKFDELEFGSNLRDRVIHAVDA 306 >gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00] gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia intracellularis PHE/MN1-00] Length = 868 Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 173/425 (40%), Positives = 255/425 (60%), Gaps = 2/425 (0%) Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 + L++W LR KL +LL + + L+ P+I V++ ME G+ +D LK E+ +L Sbjct: 442 IALKVWEQLRNKLKTAQLLELMDSLELPLIPVLADMEAVGVVLDDQNLKIFLVEVQNSLD 501 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 L E IY +G FN+ S +QLGDILF +L+ P+ KT+ GQ T+ + LE+++ G +PI Sbjct: 502 HLTETIYHEAGGSFNIRSAQQLGDILFNQLELPAAKKTRGGQASTSQEVLEKLS-GQHPI 560 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 I ILE+R+L K++STY + LP I K RVHT ++ +T TGRL+S PNLQNIPI+ Sbjct: 561 IDTILEYRKLEKLRSTYLEPLPRLIGK-DGRVHTTFNQLATATGRLSSSNPNLQNIPIRG 619 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 LGQ++R F + LISADYSQ+ELR+LAH +K L F DIH A+ ++ Sbjct: 620 SLGQRMRSCFTASQGNLLISADYSQVELRVLAHYSKDPTLLTAFLEGADIHTRTASLLYE 679 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 + E+V+ RR+AKTINF +IYG+ P +LA +L +EA +I+RYF I ++ + Sbjct: 680 KSQEEVTADERRNAKTINFGLIYGMGPQKLAQELNTTLNEAKKFIQRYFEHLQAIKKFYD 739 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 + ++ ++ GYV TI GRR +I+S ++ + R AIN IQGSAADI + AM++V Sbjct: 740 QVEHSAKEYGYVTTIAGRRRLLPDIHSENIQLQALARRQAINTIIQGSAADIIKIAMLTV 799 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 H K+ +++LQ+HDELV E PE+ + I M L VPL Sbjct: 800 HGDTTLAKMDAQLILQVHDELVVEAPEDNAKEVGKRIAMLMSNVTPGGKPLIVPLVTQWS 859 Query: 968 VSNNW 972 + +W Sbjct: 860 IGYDW 864 Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 149/286 (52%), Gaps = 15/286 (5%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E+ ++L+DGS+FIYR FYA + R DG P +A+ + K+L +E +F Sbjct: 9 EDPIYLMDGSAFIYRGFYANQSMQRS-DGFPTSALFNIGRIFLKIL----REEQPKYFVF 63 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 + D P FR+ ++P YKA R PE L+ Q+ ++ + G+ EADD +A+ Sbjct: 64 VLDGPGTNFRHTLFPLYKAQRSPAPEALIKQIEPIKRLVISLGLCLTVASNSEADDCLAS 123 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEKIDIEHVIKK-WGIPPEKMVC 181 + ++ + + +I++DKDL Q + ++D K EKI K+ G+ P + Sbjct: 124 IAH-RYRDNYPIVLIASDKDLKQCLDKNVLMWDPASKAEKITTLKSFKEDEGLLPSQWPD 182 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYAE 238 +QA+ GDS DNIPGIPGIG KTA + Q++ +LE+I N S + QKK ++ + Sbjct: 183 VQAIIGDSSDNIPGIPGIGLKTAKKIFQDFPSLESIKDNFSSLPLPVQKKFDGHL----D 238 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 L R+L L T I + ++ + + N ++ L+ E L Sbjct: 239 AMFLYRQLTTLSTTECIDLQIDTIKVGPINVQETLTILREFELVSL 284 >gi|168333372|ref|ZP_02691652.1| DNA polymerase I [Epulopiscium sp. 'N.t. morphotype B'] Length = 865 Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 183/522 (35%), Positives = 303/522 (58%), Gaps = 13/522 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK 511 +K FFE ++ KI HN K + +L+RY I++ G D + SY+++ +S ++++ A Sbjct: 351 VKNFFEAKNISKILHNSKDLRHILYRYQINIHGNIFDTAIASYLINPLQSDYELSVAATG 410 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 + ++L + K+ I ++ + ++ + L +L +L ++ Sbjct: 411 YDIKHVDQLLGTGKNKITWASLASXIIVAQLGARASAMWTLQTAQLKELTDASMLDLFYD 470 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+I+V+ MEI GI +D L ++ + +LE++IY L+ EKFN+SS KQLG Sbjct: 471 IEMPLIEVLFDMEIAGITVDAAFLTAFGKKLDALIATLEQDIYSLADEKFNISSSKQLGL 530 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF KL P+G KTKTG + T A L+++ I+ +LE+RQ K+ STY L Sbjct: 531 ILFDKLGIPAGKKTKTG-YSTAANILDKLK-DKYVIVAKVLEYRQYKKLHSTYVVGLLKL 588 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADY 750 ++K ++H+ ++ T TGR++S EPNLQNIPI+ LG++IRRAFI S + ADY Sbjct: 589 LDKN-NKLHSTFNQTVTATGRISSAEPNLQNIPIRLALGKEIRRAFIPSNDDYVFLDADY 647 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIELR+LA ++ + + F +DIH A+E+FGV + V+ R AK +NF ++Y Sbjct: 648 SQIELRVLASLSADANMQRAFLEGIDIHTSTASEVFGV--DTVTQAQRNAAKAVNFGVVY 705 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 GIS F LA +++ EA +YI+ YF ++P + Y++ + GY T+ R+ + Sbjct: 706 GISAFSLADDIQVSNQEATEYIENYFAKYPNVKHYLDSLITTSQATGYGVTLLNRKRNIV 765 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 E+ S + + +R A+N PIQG+AADI ++AMI VH +L+ + + ++L +HDEL+ Sbjct: 766 ELFSSNFNTKEYGKRIAMNMPIQGTAADIIKKAMIQVHNALKGTR--STLILTVHDELLL 823 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EV + EI ++++ ME A + L VPL V++K +W Sbjct: 824 EVHKSEIEHITKLLKTEMESA----VKLAVPLLVDVKSGXSW 861 Score = 181 bits (458), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 109/289 (37%), Positives = 162/289 (56%), Gaps = 15/289 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDG S YRAFY PLLS K +G+ NAI GF +L+ LL + +++A V FD Sbjct: 3 IMLVDGFSIAYRAFYGMPLLSTK-EGIFTNAIYGFLKILFNLLDTHQPDALA----VAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + A TFR++ YKA R +P L PQ+PL++ A GI I GFEADDI+ T Sbjct: 58 FAAPTFRHQYALTYKATRKPMPSELQPQIPLLQDLLSAMGISHISAPGFEADDILGTLAT 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLY-DTVKEEKIDIEH-----VIKKWGIPPEKMV 180 A V I+S D+DL+Q+ + + + K+ +IE V+ K+G+ P +++ Sbjct: 118 AAAAAKHDVLIVSGDRDLLQIATDSIQIXIPKTKQTGTEIESYYAADVVAKYGVIPTELI 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++AL GD+ DNIPG+ G+G KTA L+ EY N++ + N IK K +EN+ Y ++A Sbjct: 178 DVKALMGDASDNIPGVKGVGEKTALKLIAEYKNIDTLYANLENIKGAKLKENLATYKDSA 237 Query: 241 RLSRKLVMLRTDVPITIPLEHLI--LEDCNGPRLISFLKALEFTKLINR 287 S+ L ++ D+PI L+ LED R + LEF L+ + Sbjct: 238 YDSKFLATIKIDIPINFTLQDFSFKLEDNLAVR--ELFEKLEFKSLLTK 284 >gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2] gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2] Length = 873 Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 172/417 (41%), Positives = 258/417 (61%), Gaps = 18/417 (4%) Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 +L + LLH +++P+ ++++ME GI +D L++ E++ L LE+ IY +G Sbjct: 463 ELGLSALLH---EMEEPLSPILAEMEKQGIAVDVQRLQEFGRELTVELQRLEQEIYADAG 519 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 E FN++SP+QLG ILF KL P KTKTG + T A LE++ + I++ +L++RQLS Sbjct: 520 ETFNINSPQQLGHILFEKLGLPPMKKTKTG-YSTDADTLEELR-DQHSIVERVLDYRQLS 577 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 K+ STY + L I++ RVHT + T TGRL+S EPNLQNIPI+ +LG+ +R+ F Sbjct: 578 KLMSTYVNGLLAQIHE--GRVHTTFQQTVTATGRLSSTEPNLQNIPIRLELGRLLRKVFT 635 Query: 739 SPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 PT++ L+SADYSQIELRILAH ++ L + F + D+H A+E+FG+ + +V+ Sbjct: 636 --PTQEGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTK 693 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 MRR AK +NF +IYG++ F L L +PR EA YI+ YFHR+ G+ Y+E+ ++ Sbjct: 694 DMRRKAKAVNFGLIYGLTDFGLGRDLGVPRKEAKTYIETYFHRYEGVKRYLEEIVVKAKE 753 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 G V T+ R E+ P R ER A+N PIQG+AADI + AM+ V ++L+ ++ Sbjct: 754 EGQVRTLLNRLRRIPELRHPNRVQRQFGERIAMNTPIQGTAADIMKLAMLGVAEALKPYR 813 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +LLQ+HDELV EV E++ ++++ ME A L VPL + K NW Sbjct: 814 --ANLLLQVHDELVIEVAPEDLEEVAKVVREEMESA----FPLSVPLIADCKTGPNW 864 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 103/263 (39%), Positives = 157/263 (59%), Gaps = 9/263 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + + ++DG+S R FYA P+++ DG P N + GF ML +LL + + ++ V Sbjct: 2 SKILILDGNSLANRTFYALPMMTTA-DGKPTNVLHGFMTMLLRLLLEQKPD----YWVVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD T R E Y DYKA R + P+ L PQ ++ AF +P +E G+EADDIIAT Sbjct: 57 FDKTKATVRIEQYADYKAQRKETPDALKPQFDFLKELLTAFAMPILECPGYEADDIIATV 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 T +AE+ + I + D+D +QL+SP T +Y T K + D + +K+ + P +++ Sbjct: 117 TSLAEQREWETQIYTGDRDALQLISPRTTVYLTRKGITEVDAYDEGALYEKYQLRPAQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+ L GD+ DNIPG+PG+G KTA LL EYG++EN+L N +I KK +EN+ + A Sbjct: 177 DLKGLMGDASDNIPGVPGVGEKTALKLLWEYGSVENVLDNIDKISGKKLQENLRNNTDKA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLI 263 LS+KL + D+P+ I L+ L+ Sbjct: 237 LLSKKLATMLYDIPLEIDLDRLV 259 >gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51] gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 873 Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 172/417 (41%), Positives = 258/417 (61%), Gaps = 18/417 (4%) Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 +L + LLH +++P+ ++++ME GI +D L++ E++ L LE+ IY +G Sbjct: 463 ELGLSALLH---EMEEPLSPILAEMEKQGIAVDVQRLQEFGRELTVELQRLEQEIYADAG 519 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 E FN++SP+QLG ILF KL P KTKTG + T A LE++ + I++ +L++RQLS Sbjct: 520 ETFNINSPQQLGHILFEKLGLPPMKKTKTG-YSTDADTLEELR-DQHSIVERVLDYRQLS 577 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 K+ STY + L I++ RVHT + T TGRL+S EPNLQNIPI+ +LG+ +R+ F Sbjct: 578 KLMSTYVNGLLAQIHE--GRVHTTFQQTVTATGRLSSTEPNLQNIPIRLELGRLLRKVFT 635 Query: 739 SPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 PT++ L+SADYSQIELRILAH ++ L + F + D+H A+E+FG+ + +V+ Sbjct: 636 --PTQEGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTK 693 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 MRR AK +NF +IYG++ F L L +PR EA YI+ YFHR+ G+ Y+E+ ++ Sbjct: 694 DMRRKAKAVNFGLIYGLTDFGLGRDLGVPRKEAKTYIETYFHRYEGVKRYLEEIVVKAKE 753 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 G V T+ R E+ P R ER A+N PIQG+AADI + AM+ V ++L+ ++ Sbjct: 754 EGQVRTLLNRLRRIPELRHPNRVQRQFGERIAMNTPIQGTAADIMKLAMLGVAEALKPYR 813 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +LLQ+HDELV EV E++ ++++ ME A L VPL + K NW Sbjct: 814 --ANLLLQVHDELVIEVAPEDLEEVAKVVREEMESA----FPLSVPLIADCKTGPNW 864 Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 104/263 (39%), Positives = 158/263 (60%), Gaps = 9/263 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + + ++DG+S RAFYA P+++ DG P N + GF ML +LL + + ++ V Sbjct: 2 SKILILDGNSLANRAFYALPMMTTA-DGKPTNVLHGFMTMLLRLLLEQKPD----YWVVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD T R E Y DYKA R + P+ L PQ ++ AF +P +E G+EADDIIAT Sbjct: 57 FDKTKATVRIEQYADYKAQRKETPDALKPQFDFLKELLTAFAMPILECPGYEADDIIATV 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 T +AE+ + I + D+D +QL+SP T +Y T K + D + +K+ + P +++ Sbjct: 117 TSLAEQREWETQIYTGDRDALQLISPRTTVYLTRKGITEVDAYDEGALYEKYQLRPAQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+ L GD+ DNIPG+PG+G KTA LL EYG++EN+L N +I KK +EN+ + A Sbjct: 177 DLKGLMGDASDNIPGVPGVGEKTALKLLWEYGSVENVLDNIDKISGKKLQENLRNNTDKA 236 Query: 241 RLSRKLVMLRTDVPITIPLEHLI 263 LS+KL + D+P+ I L+ L+ Sbjct: 237 LLSKKLATMLYDIPLEIDLDRLV 259 >gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3] gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3] Length = 922 Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 171/485 (35%), Positives = 271/485 (55%), Gaps = 24/485 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L +Y+L+ S + +A +W + + E + ++ + A+E+ Sbjct: 458 DLGLAAYLLNPEESDYGWPRLAARWGAALKPEGGGPARLALAM---------AEALED-- 506 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 +L+ + L +Y L+ P+ V+++ME G+ ID + +++ L Sbjct: 507 -----------RLVRDGLRELYNTLELPLTPVLAEMEGRGVAIDAAAFQAFLSDVQHELD 555 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 L +Y +G FN+ S +QLGD+LF L PS KTK GQ T+ Q LE++ G + + Sbjct: 556 RLTAEVYAAAGTTFNIRSAQQLGDVLFKTLNLPSPRKTKGGQASTSQQTLEKL-AGRHAV 614 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 + +IL++R+L K++STY D LP ++ + R+HT ++ +T TGRL+S PNLQNIP++ Sbjct: 615 VDSILQFRKLEKMRSTYLDPLPRLVDGQG-RIHTTFNQKATATGRLSSSNPNLQNIPVRG 673 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 LG+++R FI+ P + L+SADYSQ+ELR+LAH+++ L F DIH AA I+ Sbjct: 674 PLGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQDAALLDAFRQGEDIHARTAALIYD 733 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 + +VSP RR+AKTINF +IYG+ +L +L+I +EA ++I RYF R G+ + E Sbjct: 734 LQAGEVSPDQRRNAKTINFGLIYGMGAQKLGQELKISTAEAKEFITRYFERLTGLKAFYE 793 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 + ++ GYV T+ GRR +I S + R AIN IQGSAADI + AM++V Sbjct: 794 NVEATAKRQGYVTTLGGRRRLLPDILSANGQAFALARRQAINTVIQGSAADIIKLAMLAV 853 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 E ++ ++LLQ+HDEL+ E PE A + M L VPL V+ Sbjct: 854 AHDAELRRMDARLLLQVHDELLLETPEATAEAAGARVAALMSSVAPGGETLSVPLVVDWG 913 Query: 968 VSNNW 972 V ++W Sbjct: 914 VGHDW 918 Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/291 (33%), Positives = 152/291 (52%), Gaps = 19/291 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 +FL+DGS+FIYR F+A + R DG P NA+ +L ++L+ R HF + D Sbjct: 14 IFLMDGSAFIYRGFFANKNMQRS-DGFPTNALVVVTRVLLRILREERPR----HFVFVKD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 FR++I+P YKANR +PE L Q+ P++R+ A G+ +G EADD IA+ Sbjct: 69 GKGKNFRHDIFPLYKANRDAMPEDLARQIEPILRM-VHALGLKLEVSEGCEADDCIASLA 127 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKIDIEHVIK-KWGIPPEKMVCLQ 183 E V I+S DKDL Q + P ++D +EEK+ E + + G+ P + +Q Sbjct: 128 ARFSSE-RPVVIVSGDKDLKQCLGPNVYMWDPAAREEKLLNEAEFRAESGVSPAQWPDVQ 186 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI----LINASRIKQKKRRENILEYAET 239 AL GD+ DNIPG+PGIG KTA + + +LE+I ++ +I+ K R + E Sbjct: 187 ALVGDASDNIPGVPGIGPKTARQIFEICPSLEDIRDHFVLLPPKIQDKMR-----GHLED 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 + R+L L ++ L+ + + N P + + E L +A+ Sbjct: 242 MFIWRELTTLSLKACESLTLDDMAVRPLNVPECRALAEEFELFALRREMAS 292 >gi|219815963|gb|ACL37083.1| DNA polymerase I [uncultured bacterium] Length = 647 Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 218/697 (31%), Positives = 364/697 (52%), Gaps = 59/697 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LVDGS F++RAF+A P L+ GL NAI G + + KL++ + +H AVIFD Sbjct: 4 FVLVDGSYFLFRAFHALPPLTTS-TGLQTNAIRGAISAIQKLMRRVQ----PTHMAVIFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P TFR+ + P YK +RP +PE L Q+P + +A GIP + G EADDII T Sbjct: 59 TPEPTFRHVLSPIYKGDRPSMPEELSQQIPYLHALIRALGIPLHTLPGAEADDIIGTLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AEK G V I + DKD+ QLV+ L D+ K++ +D++ VI+K+G+ P++++ L Sbjct: 119 RAEKAGHQVLISTGDKDMAQLVTDKVTLEDSFKDKPMDVDGVIEKFGVRPDQIIDYLTLM 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ D I G+PG+G KTAA LL EYG + IL N IK K +++ + E L +L Sbjct: 179 GDASDGIRGVPGVGAKTAAKLLNEYGTIAGILENVDNIK-GKVGQSLKDNVEGIALDHQL 237 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLDI 306 + D+ +++ + L L + + L + LEF + + + ++ + I Sbjct: 238 ASIVIDLDLSLSYDDLKLCEPDVEALRNLYTELEFRNQLQSLDHPNNPNSPTYKQTTQSI 297 Query: 307 NTTENKGIAIETEIDRDTTIKTSQFSSLSDQT-SKINSEQTPQKLFLERLQKLSQYPINN 365 + TE +E+EI D +S L + T + S++ KLF +RL ++ I+ Sbjct: 298 SKTEQ---PVESEI-TDQATSSSVDDRLGEATYHTVLSQEAWDKLF-QRLSTEKRFAIDT 352 Query: 366 DSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVE 425 + T + + ++ F + D DA++ P+A D E Sbjct: 353 E-------TTSLDYRIAEM-----VGFSVAFDANDAYYI-PLA---------HDYEGAPE 390 Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 + D I+ +K E+ KIGH++KYD + +GI ++G Sbjct: 391 QLNRD-----------------AIIQQIKPILEDPSVEKIGHHLKYDAHIFENHGIHLQG 433 Query: 486 -FEDIMLMSYVLDSGRSSHDIASIAQKWLSY---TRKEILKSRKSSIPIDKISDSQVQEH 541 + D ML SYVL++ + H + +A+ +LS+ T +++ ++I + Sbjct: 434 WYFDTMLASYVLNAVTTRHGMDDVARVYLSHLTTTFEQVAGKGAKQKTFNQIEIETAGHY 493 Query: 542 AIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 A E+++V +L+ +L KL + +L+++ ++ P+ V++ ME GI++D L Q+S Sbjct: 494 AAEDAHVTYRLYEVLERKLKEIPELINILHHIEMPVASVLATMEENGIELDLSFLDQLSV 553 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 + + + +LE I +++GE FN+ SPKQ+G++LF KL G KT TGQ+ T+ LE+I Sbjct: 554 DFANTIQNLENQIIEIAGESFNVGSPKQVGEVLFEKLGLKGGKKTATGQYSTSEAVLEKI 613 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 D+PI + I+E+R L+K++STY ++L N T Sbjct: 614 ---DHPITELIIEYRGLTKLRSTYTEALVKQANPDTH 647 >gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum DSM 5476] gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum DSM 5476] Length = 890 Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 160/408 (39%), Positives = 250/408 (61%), Gaps = 10/408 (2%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 LLH ++ P+ +V++ ME G Q+D ++ + + + + IY +GE+FN++ Sbjct: 488 LLH---DIELPLSEVLANMENEGFQVDVAGVRTFGEMLQVEIERITQEIYGYAGEEFNIN 544 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 S ++LG ILF KL P+G KTKTG + T LE++ +PI +LE+R+L+K+ STY Sbjct: 545 STRELGAILFDKLGLPTGKKTKTG-YSTNVDVLEKL-IPKHPIAGLVLEYRKLTKLSSTY 602 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 L + QRVH+ + T TGR++S EPN+QNIPI+T+LG ++R+ F++ P Sbjct: 603 VTGLLK-VTGPDQRVHSVFRQTETRTGRISSTEPNMQNIPIRTELGSQMRKFFVAKPGCV 661 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L+ ADYSQIELRILAHI+ + + F DIH A+++FGV E + ++RR AK I Sbjct: 662 LLDADYSQIELRILAHISNDSRMITAFREGADIHTATASQVFGVPAEVLPAELRRRAKAI 721 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YGI + L+ + + +EA +YI+ Y H + G+ +Y+ ++GYV+T+FG Sbjct: 722 NFGIVYGIGAYSLSQDINVSVAEAKEYIENYLHTYSGVRQYMNDIVESSAKSGYVKTMFG 781 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 R H EI S + + ER A+N PIQG+AADI + AM+ V++ L++ L+ +++LQ+ Sbjct: 782 RVRHLPEITSSNHNTKAFGERVALNTPIQGTAADIIKIAMVKVYRRLKEEGLSAQLILQV 841 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDEL+ EV + + A I+ ME A +L VPL V++ NW Sbjct: 842 HDELLIEVSKADAPRAKVILKEEMEHAA----DLSVPLSVDVSEGENW 885 Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 156/287 (54%), Gaps = 12/287 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + VDG+S + R++Y LS G+P NA+ GF N++ K+++ + +A V FD Sbjct: 43 VLAVDGNSILNRSYYGVRNLSNSK-GVPTNAVFGFFNVMDKMIKEVEPDCVA----VAFD 97 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y YKA R +PE L QLP+ + Q FG +E +GFEADDI+ T+ Sbjct: 98 LSAPTFRHKQYDGYKAGRKGMPEELAVQLPITKELIQLFGYHIVECEGFEADDIMGTFAR 157 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI--DIEHVIKKWGIPPEKMVCLQA 184 + ++ I + D+D +QLV + +E I D + +++++G+ P +++ ++A Sbjct: 158 LCREQKAECVIATGDRDNLQLVGDGVTVRLATNKEAILFDTDKIVQEYGVTPPELIEVKA 217 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR--- 241 L GDS DNIPG+ GIG KTA L+ +Y ++ IL +A + R +N+L AE AR Sbjct: 218 LMGDSSDNIPGVKGIGEKTALSLVSKYHSVSYILDHAQELDATTRVKNLLS-AEGARELA 276 Query: 242 -LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 +SR L + + PI L H + + L LE K + R Sbjct: 277 EMSRMLGTIVDNAPIDGDLSHYAVGPRDDAGLYRIFSELELKKFLER 323 >gi|91070081|gb|ABE11006.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC612] Length = 421 Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 181/429 (42%), Positives = 265/429 (61%), Gaps = 32/429 (7%) Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +YE ++ P+ V+SQME+ GI ID L ++S E+ L +E +Y+LS E FNLSSPK Sbjct: 1 MYEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELSEENFNLSSPK 60 Query: 628 QLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 QLG+ILF KL KTKTG W T A LE++ ++ II+++++ R L+K+ STY Sbjct: 61 QLGEILFEKLNLDKKKSRKTKTG-WSTDAVVLERL-VDEHEIIQHLIKHRTLTKLLSTYI 118 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745 D+LPN IN++T RVHT ++ A+T TGRL+S PNLQNIP++T+ ++IR+AF+ KL Sbjct: 119 DALPNLINEKTGRVHTNFNQAATATGRLSSSNPNLQNIPVRTEFSRRIRKAFLPEKNWKL 178 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 +SADYSQIELRILAH+A L F + DIH + A IF E +S RR KTIN Sbjct: 179 LSADYSQIELRILAHLADEEILINAFHKNDDIHSLTAKLIF--EKEVISSDERRVGKTIN 236 Query: 806 FSIIY--GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 F +IY GI F +T + IP EA +++ +Y R+ I +++E + GYV+TIF Sbjct: 237 FGVIYGMGIKKFARSTGVSIP--EAKEFLIKYKERYSKIFKFLELQERLALSKGYVKTIF 294 Query: 864 GRRIHY------------------DEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 GR+ + D ++ ++ + + RAA NAPIQGS+ADI + AM+ Sbjct: 295 GRKREFKFDKNGLGRLIGKDPYEIDLQSARRAGMEAQSLRAAANAPIQGSSADIIKIAMV 354 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 ++K + + KMLLQ+HDEL+FEV + + ++++ +ME C + L VPL V+ Sbjct: 355 QLNKKFIEMNVPAKMLLQVHDELLFEVEPDSLEITTKLVKKTMED-C---VKLNVPLLVD 410 Query: 966 IKVSNNWQE 974 I + +NW E Sbjct: 411 IGIGDNWME 419 >gi|227501799|ref|ZP_03931848.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725] gi|227077824|gb|EEI15787.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725] Length = 882 Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 189/555 (34%), Positives = 315/555 (56%), Gaps = 38/555 (6%) Query: 428 FIDLSVHTSQDSTGKNTLTKE--ILSYLK----KFFENEHFLKIGHNIKYDKLVLHRYGI 481 F+D + H Q G+ + +E ++ +L+ K+F H K +L GI Sbjct: 351 FVDRNHHGLQVELGELSADEEKVLVQWLESPAPKYF---------HAAKAAFHMLAGRGI 401 Query: 482 SMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540 + G D L +Y+L G+ +++++ + Q+ L KS ++ + DS Sbjct: 402 ELDGLAHDTALAAYILRPGQRTYELSDVYQRHLQ-------KSLGAATEQMSLLDSS--- 451 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 ++ + I++L L +L +Y L+ P++ ++++ME TGI +D D+L+ Sbjct: 452 SLVDQAAAIMELAEKLTAELQDIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKD 511 Query: 601 EISKNLLSLEENIYDLSG-EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 + + E + +L+G EK NL+SPKQL +LF P KTKTG + T A+++EQ Sbjct: 512 AFVEQVAEQERSARELAGDEKLNLNSPKQLQKVLFETFDMPKTKKTKTG-YSTAAKEIEQ 570 Query: 660 INCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 + +P + ++L R+ K+K+T + L + R+HT ++ T TGRL+S EP Sbjct: 571 LAIKHPHPFLDHLLAHREYQKMKTTL-EGLIKTVQP-DGRIHTTFNQTVTSTGRLSSTEP 628 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 NLQNIP++T+ G++IR AFI ++L++ADYSQIE+R++AH++ L + ++ D+ Sbjct: 629 NLQNIPVRTEAGRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGEDL 688 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 H V + +F V +++V+P++RR K +++ ++YG+S F L+ QL IP EA ++ YF Sbjct: 689 HNFVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKSIMESYFE 748 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 RF G+ +Y++ R++GY T+FGRR + E+NS R ERAA+NAPIQG+AA Sbjct: 749 RFGGVKKYLDDVVEQARKDGYTATLFGRRRYLPELNSDNRLARENAERAALNAPIQGTAA 808 Query: 898 DITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 DI + AMI V ++L D K +++LLQ+HDELV EV E +I+ M+ A I Sbjct: 809 DIIKVAMIRVDRALRDMK--SRVLLQVHDELVVEVAPGEADQVREILEREMDSA----IE 862 Query: 958 LRVPLKVNIKVSNNW 972 L VPL+V+ +W Sbjct: 863 LNVPLEVSAGAGTDW 877 Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 100/305 (32%), Positives = 155/305 (50%), Gaps = 13/305 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P+ + G NA+ GF +ML ++ R ++IA V F Sbjct: 11 LLLIDGHSMAFRAFYALPVENFSTSGGQHTNAVYGFLSMLSNIVSEERPDAIA----VAF 66 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E++PDYKA R PE Q+ ++R + GI + + +EADDI+AT Sbjct: 67 DVGRKTFRTEMFPDYKAQREAAPEEFKGQVDIIRDTLETLGITTLSRENYEADDILATLA 126 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 A+ + I++ D+D +QLV+ +T + +K + E V K+G+ P + Sbjct: 127 TQAQD--YETLIVTGDRDYLQLVTDSTTVLYPMKGVSTLHRFTPEAVEDKYGLTPAQYPD 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIP +G KTA + +YG+L +++ +A I N E E + Sbjct: 185 FAALRGDPSDNLPGIPKVGEKTATKWIVKYGDLASLVEHAEEINGVVGN-NFRERIEQVQ 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAANIE 300 ++RKL + TD+ + + + L + + + LEF T L +RV D A Sbjct: 244 MNRKLTQMITDMDLDVGPDDLAFREVKVADVAAKFDELEFGTNLRDRVLAAIPNDGAEAA 303 Query: 301 PVVLD 305 V D Sbjct: 304 EQVAD 308 >gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX] gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX] Length = 929 Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 179/529 (33%), Positives = 294/529 (55%), Gaps = 11/529 (2%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 + L + + + K+ H +K+ L G ++ G E D + +Y+L+ GR + ++A++ Sbjct: 404 AALTAWLADPAYPKVLHGVKWALRALWARGWTLDGVESDTAIAAYLLEPGRRNFELATLC 463 Query: 510 QKWLSYTRKEI-LKSRKSSIPIDKISDSQ--VQEHAIENSNVILQLWLLLRPKLIVEKLL 566 ++L E + + ++ ++ D Q + + ++L L L +L + L Sbjct: 464 LRYLGRELTEHNAEGAQLTLDLEGTGDDQDTARRELALRALATVELALALDAELTRREGL 523 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 + L+ P+ +V+++ME GI D L+ + AE + + + + L G +FNL SP Sbjct: 524 DLLHNLELPLAEVLARMEDAGIAADLTYLRDLEAEFAAAVRQAVDEAHRLVGREFNLGSP 583 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQL ILF +L P + KTG DN + +L R +K+++T + Sbjct: 584 KQLQQILFDELGLPKTKRIKTGYTTDADALAWLAAQTDNELPVILLRHRDQTKLRTT-VE 642 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745 L I + R+HT + T TGRL+S EPNLQNIP++TD G++IRRAF+ ++L Sbjct: 643 GLIKTIAE-DGRIHTTFHQTVTATGRLSSAEPNLQNIPVRTDAGRRIRRAFVVGEGYEQL 701 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 ++ADYSQIELRI+AH+++ L + F + D H +A+ +F + +++V + R K +N Sbjct: 702 LTADYSQIELRIMAHLSEDEALIEAFHSGFDFHAQIASRVFRIPVDQVDGEARARIKAMN 761 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 + + YG+S + LA QL I EA ++ YF F + +Y+E R+ GY TI GR Sbjct: 762 YGLAYGLSDYGLAQQLGISPKEARVLMEEYFSHFGKVRDYLEAVVVRARREGYTATILGR 821 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + ++NS R + ER A+NAPIQGSAADI + AM+ V ++L ++ LA++MLLQ+H Sbjct: 822 RRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKLAMLRVDRALRENGLASRMLLQVH 881 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DELV EV E+ T +++V M +A LRVPL V++ V NW + Sbjct: 882 DELVLEVAPGELDTVRELVVEHMSQAQ----QLRVPLAVSVGVGPNWHD 926 Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 111/322 (34%), Positives = 167/322 (51%), Gaps = 26/322 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L LVDG S +RAFYA P + G NAI GF +ML KLL +E +H AV + Sbjct: 35 LLLVDGHSMAFRAFYALPAEKFVNSAGQATNAIYGFTSMLVKLL----REEQPTHIAVAW 90 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+E Y +YKA R + P Q+ L++ G+ ++ + G+EADDIIAT T Sbjct: 91 DRSEPTFRHEEYAEYKAGRSETPPEFPSQVGLLQELLGLIGVTSLSVPGYEADDIIATLT 150 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 EG V I S D+D QLV P L D + ++ E V K+ +PPE+ Sbjct: 151 TRGLAEGMDVLIASGDRDTFQLVGEHCTVLYPGRSLSDLI---RMTPEAVEAKYAVPPER 207 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 L AL G+ DN+PG+PG+G KTAA L +YG+L+ ++ +A I K +N+ ++ + Sbjct: 208 YCDLAALVGEKSDNLPGVPGVGPKTAAKWLAKYGSLDALVAHAHEIGGKA-GQNLRDHLD 266 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297 +++L L TDV + + + + L N + LEF + L +R+ A Sbjct: 267 DVLRNQRLNRLATDVELGVDVTGMTLGHWNRDGVNLLFDNLEFASTLRDRLFAVLSEQAG 326 Query: 298 N--IEPVVLDINTTENKGIAIE 317 + EPV +++G ++E Sbjct: 327 DDSAEPV-------QDEGFSVE 341 >gi|295103350|emb|CBL00894.1| DNA polymerase I [Faecalibacterium prausnitzii SL3/3] Length = 857 Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 160/408 (39%), Positives = 247/408 (60%), Gaps = 9/408 (2%) Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK-FNLSSP 626 +Y ++ P+ V++ M TG+ +D+D ++Q ++ + L + I+ +G FN +SP Sbjct: 456 LYNEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLREELEQVLTRIHMETGSATFNPNSP 515 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG++LF + P G KT+ G W T A+ LE + + P+++++L++R K+ STY + Sbjct: 516 KQLGEMLFDTMGLPHGKKTQRG-WSTDAETLESLR--EYPLVEDVLQYRAYQKLNSTYVE 572 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 L I + R+H+ ++ TGRL+S PNLQNIPI+T+LG ++R F++ P L+ Sbjct: 573 GLLKVIGE-DGRIHSTFNQTEARTGRLSSDNPNLQNIPIRTELGSQLRAYFVAKPGCVLV 631 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 ADYSQIELRILAHI + Q F N DIHR AA+I+G+ +V+P++R AK INF Sbjct: 632 DADYSQIELRILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINF 691 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YG + L+ + + EA ++K Y FP + Y++KT + NGYV T+FGRR Sbjct: 692 GIMYGKGAYSLSKDIGVTVKEADAFLKNYLAAFPNVSGYMDKTIADAKANGYVSTLFGRR 751 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 E+ S ++R ER A N PIQG+AAD+ + AM+ V K L D K+A++++L +HD Sbjct: 752 RTLPELASTNFNVRASGERMARNTPIQGTAADVIKLAMVRVWKRLRDEKMASRLILTVHD 811 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EL+ E PE E A++I+ ME C + VPL ++ NW E Sbjct: 812 ELIVEAPEVEAEQAARILREEME-GC---VQYAVPLSTDVHAGKNWLE 855 Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 110/291 (37%), Positives = 160/291 (54%), Gaps = 14/291 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DG+S RAFY LL+ K DG NAI GF N+L LL KE AV FD Sbjct: 3 LLVIDGNSIANRAFYGIKLLTTK-DGRYTNAIYGFLNILLSLL----KECQPDEVAVAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+++Y YKA R +PE L Q+P+++ G + +G+EADDI+ T Sbjct: 58 LKAPTFRHKMYDGYKATRHAMPEELAQQMPVLKQLLADLGYRTVTAEGWEADDILGTLAA 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTC--LYDTV----KEEKIDIEHVIKKWGIPPEKMV 180 + + D+D +QLVS +T L TV K +D + + +K+G+ P++++ Sbjct: 118 ACASRKDDCFLATGDRDSLQLVSESTTVLLAATVMGRSKTVVMDEDAIQEKYGLAPKQLI 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAE 238 +++L GD+ DNIPG+ GIG KTA L+Q +G+LE + I+ RIK K+RE++LE Sbjct: 178 EVKSLMGDTSDNIPGVKGIGEKTALSLVQTFGSLEGVYQNIDDKRIK-PKQREHLLEDKP 236 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A LS L +RTD PI + + N P + L+ LE LI R Sbjct: 237 MAELSHTLGTIRTDAPIDTAEGSYTVGEGNKPAAVRLLQELEIHSLIPRFG 287 >gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3] Length = 829 Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 155/398 (38%), Positives = 244/398 (61%), Gaps = 7/398 (1%) Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P+ V+ ME G+ ID D +K E+ + + IY+ +G +FN+ SPKQLG +LF Sbjct: 435 PLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGYEFNIGSPKQLGSVLF 494 Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 KL PS KTKTG + T A LE + +PI+ I E+R L+K+++TY L + + Sbjct: 495 EKLALPSAKKTKTG-YSTNADVLESL-MDKHPIVPLITEYRALTKLQNTYVTGLLKVVGE 552 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754 R+H+ + T TGR++S EPN+QNIP++T LG+++RR F + L+ ADYSQIE Sbjct: 553 -DGRIHSTFKQTETRTGRISSAEPNIQNIPVRTPLGREMRRFFTAKDGYLLVDADYSQIE 611 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LR+LAHI+ + + F + +DIH + A+++F IE V+P +R AK +NF I+YGI Sbjct: 612 LRVLAHISGDEIMKKAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGA 671 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 F L+ + + +A++YI+ Y ++ GI Y+E+T +++GYVET+FGRR + E+ + Sbjct: 672 FSLSKDIGVSVPKASEYIRSYLSKYSGIAHYMEQTVAKAKRDGYVETMFGRRRYIKELAA 731 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 +++ ER A N PIQG+AADI + AMI V+ LE+ L +++LQ+HDEL+ E E Sbjct: 732 KNKNLQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLEESGLDARLILQVHDELIVEAKE 791 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + + ++ ME A + L VP+ V++ + W Sbjct: 792 DCAEKVALLLKEEMENA----VKLTVPMTVDVNIGKTW 825 Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 102/289 (35%), Positives = 162/289 (56%), Gaps = 16/289 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DG+S + RAFY +L+ G+ NA+ GF N L L ++ + IA V FD Sbjct: 3 FLIIDGNSILNRAFYGIRVLTNSR-GVATNAVTGFMNTLLMLEKDVDPDMIA----VAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+++Y YKANR +PE L QLP ++ A GI IE +GFEADDII T + Sbjct: 58 LKAPTFRHKMYDGYKANRKGMPEDLAQQLPYMKKIITAMGITIIEKEGFEADDIIGTVSA 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--EEKIDIEH----VIKKWGIPPEKMV 180 + T+ + D+D QLV+ Y TV+ + K DI + +++++G+ P++M+ Sbjct: 118 ACADKKIPCTVSTGDRDSFQLVND----YVTVRLAKTKGDIYYTPDVIMEEYGVTPKQMI 173 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN-ASRIKQKKRRENILEYAET 239 ++AL GDS DNIPG+PGIG KTA L++E+ +++ + N S + K R + E+ Sbjct: 174 EVKALMGDSSDNIPGVPGIGEKTALSLIKEFASVDGVYENIGSTLITKGVRTKLENGKES 233 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +SR+L + PI L H + ++ + L L LE K++ ++ Sbjct: 234 CYMSRQLAEICLTAPIDTELSHYVPKERDDTELARLLSELEMYKMLQKL 282 >gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a] Length = 829 Score = 310 bits (795), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 155/398 (38%), Positives = 244/398 (61%), Gaps = 7/398 (1%) Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P+ V+ ME G+ ID D +K E+ + + IY+ +G +FN+ SPKQLG +LF Sbjct: 435 PLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGYEFNIGSPKQLGSVLF 494 Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 KL PS KTKTG + T A LE + +PI+ I E+R L+K+++TY L + + Sbjct: 495 EKLALPSAKKTKTG-YSTNADVLESL-MDKHPIVPLITEYRALTKLQNTYVTGLLKVVGE 552 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754 R+H+ + T TGR++S EPN+QNIP++T LG+++RR F + L+ ADYSQIE Sbjct: 553 -DGRIHSTFKQTETRTGRISSAEPNIQNIPVRTPLGREMRRFFTAKDGYLLVDADYSQIE 611 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LR+LAHI+ + + F + +DIH + A+++F IE V+P +R AK +NF I+YGI Sbjct: 612 LRVLAHISGDEIMKKAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGA 671 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 F L+ + + +A++YI+ Y ++ GI +Y+E T +++GYVET+FGRR + E+ + Sbjct: 672 FSLSKDIGVSVPKASEYIRSYLSKYSGIAQYMELTVAKAKRDGYVETMFGRRRYIKELAA 731 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 +++ ER A N PIQG+AADI + AMI V+ L+D L +++LQ+HDEL+ E E Sbjct: 732 KNKNLQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLKDSGLDARLILQVHDELIVEAKE 791 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + + ++ ME A + L VP+ V++ + W Sbjct: 792 DCAEKVALLLKEEMENA----VKLTVPMTVDVNIGKTW 825 Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 101/289 (34%), Positives = 161/289 (55%), Gaps = 16/289 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DG+S + RAFY +L+ G+ NA+ GF N L L ++ + IA V FD Sbjct: 3 FLIIDGNSILNRAFYGIRVLTNSR-GVATNAVTGFMNTLLMLEKDVNPDMIA----VAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+++Y YKANR +PE L QLP ++ A GI IE +GFEADDII T + Sbjct: 58 LKAPTFRHKMYDGYKANRKGMPEDLAQQLPYMKKIITAMGITIIEKEGFEADDIIGTVSA 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--EEKIDIEH----VIKKWGIPPEKMV 180 + T+ + D+D QLV+ Y TV+ + K DI + +++++G+ P++M+ Sbjct: 118 ACADKKIPCTVSTGDRDSFQLVND----YVTVRLAKTKGDIYYTPDVIMEEYGVTPKQMI 173 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN-ASRIKQKKRRENILEYAET 239 ++AL GDS DNIPG+ GIG KTA L++E+ +++ + N S + K R + E+ Sbjct: 174 EVKALMGDSSDNIPGVAGIGEKTALSLIKEFASVDGVYENIGSTLITKGVRTKLENGKES 233 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +SR+L + PI L H + ++ + L L LE K++ ++ Sbjct: 234 CYMSRQLAKICLTAPIDTELSHYVPKERDDTELAKLLSELEMYKMLQKL 282 >gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN] gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923] gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae] gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae] gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923] Length = 911 Score = 310 bits (794), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 183/514 (35%), Positives = 297/514 (57%), Gaps = 24/514 (4%) Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRK 525 KL +H ++ RG+ D L +Y++ G+ S + ++ ++L R E + + Sbjct: 403 KLAMHD--LAGRGWTLGGITSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQEQ 460 Query: 526 SSI--PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 S+ +D++ D Q + I + ++ L L +L + + ++ P+ V++ M Sbjct: 461 FSLLDNVDEV-DKQAIQTLILRARAVVDLAAALDAELDLIDSTSLLGEMELPVQQVLADM 519 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E GI D LL ++ ++ + E Y + G++ NLSSPKQL +LF +L P Sbjct: 520 EKAGIAADLRLLTELQSQFGDQIRDAAEAAYAVIGKQINLSSPKQLQVVLFEELGMPKTK 579 Query: 644 KTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 +TKTG + T A L+ + C ++P ++++L R ++++K T D L N + R+HT Sbjct: 580 RTKTG-YTTDADALQSLFCKTEHPFLQHLLTHRDVTRLKVT-VDGLLNAVAA-DGRIHTT 636 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK----KLISADYSQIELRIL 758 ++ TGRL+S EPNLQNIPI+T+ G++IR AF+ +L++ADYSQIE+RI+ Sbjct: 637 FNQTIATTGRLSSTEPNLQNIPIRTNAGRQIRDAFVVGSENNGYTELMTADYSQIEMRIM 696 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH+++ L + F D+H VA+ FG+ IE ++P++RR K +++ + YG+S + LA Sbjct: 697 AHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAYGLSAYGLA 756 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 TQL+I EA +++YF RF G+ +Y+ R++GY T+ GRR + E++S Sbjct: 757 TQLKISTEEAKLQMEQYFARFGGVRDYLMDVVEQARKDGYTSTVLGRRRYLPELDSSNRQ 816 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 IR ERAA+NAPIQGSAADI + AMI+V KSL+ KLA++MLLQ+HDEL+FEV E Sbjct: 817 IREAAERAALNAPIQGSAADIIKVAMIAVDKSLKQAKLASRMLLQVHDELLFEVAIGERE 876 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ M A L VPL+V++ +W Sbjct: 877 QIEAMVREQMGSA----YPLDVPLEVSVGFGRSW 906 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 114/294 (38%), Positives = 157/294 (53%), Gaps = 14/294 (4%) Query: 4 ENH----LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 E+H L L+DG+S +RAFYA P + K GL NA+ GF ML LL +E Sbjct: 11 EDHTKPMLMLLDGNSLAFRAFYALPTENFKTRGGLTTNAVYGFTAMLINLL----REEAP 66 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H A FD TFR+E Y YKANR IP Q+ + + A GI GFEAD Sbjct: 67 THIAAAFDVSRKTFRSECYAGYKANRSSIPAEFHGQIDITKEVLGALGITVFAEAGFEAD 126 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGI 174 D+IAT AE EG+ V +++ D+D +QLVS T LY V E + E VI+K+G+ Sbjct: 127 DLIATLATQAENEGYRVLVVTGDRDALQLVSNDVTVLYPRKGVSELTRFTPEAVIEKYGV 186 Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 P + L AL GD DN+PGIPG+G KTAA + +YG+L+ ++ N ++ K Sbjct: 187 TPAQYPDLAALRGDPSDNLPGIPGVGEKTAAKWIVDYGSLQGLVDNVESVRGKVGEALRT 246 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 A R +R+L L DVP+ + L L+ + R+ LEF L +R+ Sbjct: 247 HLASVVR-NRELTELVKDVPLVQTSDTLRLQPWDRDRIHRLFDNLEFRVLRDRL 299 >gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS] gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS] Length = 929 Score = 310 bits (793), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 185/522 (35%), Positives = 301/522 (57%), Gaps = 34/522 (6%) Query: 473 KLVLHRYGISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----L 521 KL +H ++ RG++ D L +Y++ G+ S + ++ L Y R+E+ Sbjct: 415 KLAMH--DLAGRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLS---LRYLRRELRADNPA 469 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + S + D Q + I + +L L L +L + R++ P+ V++ Sbjct: 470 QQQLSLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSLLGRMELPVQRVLA 529 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +ME TGI +D D L+Q+ +E + + E Y + G++ NL SPKQL +LF +L P Sbjct: 530 EMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELAMPK 589 Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 +TKTG + T A L+ + + +P ++++L R +++K T D L N + R+H Sbjct: 590 TKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAS-DGRIH 646 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI---SPPTK-------KLISADY 750 T ++ TGRL+S EPNLQNIPI+T+ G++IR AF+ PP +L++ADY Sbjct: 647 TTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVESRPPGSGGGAVFTELMTADY 706 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIE+RI+AH+++ L + F D+H VA+ F V I++V+P +RR K +++ + Y Sbjct: 707 SQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVPIDEVTPDLRRRVKAMSYGLAY 766 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 G+S + LA QL+I EA + +YF RF GI +Y+ + R++GY T+FGRR + Sbjct: 767 GLSAYGLAAQLKISTEEAKVQMDQYFARFGGIRDYLRDVVDQARKDGYTSTVFGRRRYLP 826 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 E++S ++R ERAA+NAPIQGSAADI + AMI V ++++D L+++MLLQ+HDEL+F Sbjct: 827 ELDSSNRNVREAAERAALNAPIQGSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLF 886 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EV + E T +++ M A L VPL+V++ +W Sbjct: 887 EVADGERDTLEKLVRDKMGSAY----ALDVPLEVSVGYGRSW 924 Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 112/305 (36%), Positives = 161/305 (52%), Gaps = 20/305 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG+S YRAFYA P + K GL NA+ GF ML LL++ + SH A F Sbjct: 34 LMLLDGNSLAYRAFYALPAENFKTQGGLTTNAVYGFTAMLINLLRDEQP----SHVAAAF 89 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR + YP+YKA R P+ Q+ + + A GI + GFEADDIIAT Sbjct: 90 DVSRQTFRVDKYPEYKAGRSSTPDEFRGQIDIAKEVLVALGIAVLAEPGFEADDIIATLA 149 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 AE EG+ V +++ D+D +QLVS T LY + + V +K+G+ P++ Sbjct: 150 TQAEGEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSDLTRFTPDAVQEKYGLTPQQYPD 209 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238 AL GD DN+PGIPG+G KTA + EYG+L+ ++ N ++K K R N+ Sbjct: 210 FAALRGDPSDNLPGIPGVGEKTATKWIAEYGSLQALVDNVDQVKGKVGDALRANLSHVV- 268 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 L+R+L L DVP+ + L ++ + ++ LEF L +R+ T A Sbjct: 269 ---LNRELTDLVKDVPLPHTPDTLRVQPWDRDQIHRLFDDLEFRVLRDRLFETL----AA 321 Query: 299 IEPVV 303 +EP V Sbjct: 322 VEPEV 326 >gi|306835977|ref|ZP_07468969.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726] gi|304568143|gb|EFM43716.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726] Length = 882 Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 178/510 (34%), Positives = 297/510 (58%), Gaps = 23/510 (4%) Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 H K +L GI + G D L +Y+L G+ +++++ + Q+ L +K + + + Sbjct: 387 HAAKAAFHMLAGRGIELNGLAHDTALAAYILRPGQRTYELSDVYQRHL---QKSLGAASE 443 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 +D S ++ + I++L L +L +Y L+ P++ ++++ME Sbjct: 444 QMSLLDNSS-------LVDQAAAIMELAEKLTTELQDIDSFELYTDLELPLVTILARMEA 496 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAK 644 TGI +D D+L+ + + E + +L+G+ K NL+SPKQL +LF P K Sbjct: 497 TGIAVDVDILETQKDAFVEQVAEQERSARELAGDDKLNLNSPKQLQKVLFETFDMPKTKK 556 Query: 645 TKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 TKTG + T A+++EQ+ +P + ++L R+ K+K+T + L + R+HT + Sbjct: 557 TKTG-YSTAAKEIEQLAIKHPHPFLDHLLAHREYQKMKTTL-EGLIKTVQP-DGRIHTTF 613 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762 + T TGRL+S EPNLQNIP++T+ G++IR AFI ++L++ADYSQIE+R++AH++ Sbjct: 614 NQTVTSTGRLSSTEPNLQNIPVRTEAGRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLS 673 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 L + ++ D+H V + +F V +++V+P++RR K +++ ++YG+S F L+ QL Sbjct: 674 ADPGLIEAYKAGEDLHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLG 733 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IP EA ++ YF RF G+ +Y++ R++GY T+FGRR + E+NS R Sbjct: 734 IPAGEAKSIMESYFERFGGVKKYLDDVVEQARKDGYTATLFGRRRYLPELNSDNRLAREN 793 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ERAA+NAPIQG+AADI + AMI V ++L D K +++LLQ+HDELV EV E + Sbjct: 794 AERAALNAPIQGTAADIIKVAMIRVDRALRDMK--SRVLLQVHDELVVEVAPGEADQVRE 851 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 I+ M+ A I L VPL+V+ +W Sbjct: 852 ILEREMDSA----IELNVPLEVSAGAGTDW 877 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/297 (32%), Positives = 154/297 (51%), Gaps = 13/297 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P+ + G NA+ GF +ML ++ R ++IA V F Sbjct: 11 LLLIDGHSMAFRAFYALPVENFSTSGGQHTNAVYGFLSMLSNIVSEERPDAIA----VAF 66 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E++PDYKA R +PE Q+ ++R + GI + + +EADDI+AT Sbjct: 67 DVGRKTFRTEMFPDYKAQREAVPEEFKGQVDIIRDTLETLGITTLSRENYEADDILATLA 126 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 A+ + I++ D+D +QLV+ +T + +K + E V K+G+ P + Sbjct: 127 TQAQD--YETLIVTGDRDYLQLVTDSTTVLYPMKGVSTLHRFTPEAVEDKYGLTPVQYPD 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIP +G KTA + +YG+L ++ +A I N E E + Sbjct: 185 FAALRGDPSDNLPGIPKVGEKTATKWIVKYGDLATLVDHAEEINGVVGN-NFRERIEQVQ 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297 ++RKL + TD+ + + + L + + + LEF T L +RV + D A Sbjct: 244 MNRKLTQMITDMDLDVGPDDLAFREAKVADVAAKFDELEFGTNLRDRVLSAIPNDGA 300 >gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae] Length = 907 Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 183/514 (35%), Positives = 297/514 (57%), Gaps = 24/514 (4%) Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRK 525 KL +H ++ RG+ D L +Y++ G+ S + ++ ++L R E + + Sbjct: 399 KLAMHD--LAGRGWTLGGITSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQEQ 456 Query: 526 SSI--PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 S+ +D++ D Q + I + ++ L L +L + + ++ P+ V++ M Sbjct: 457 FSLLDNVDEV-DKQAIQTLILRARAVVDLAAALDAELDLIDSTSLLGEMELPVQQVLADM 515 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E GI D LL ++ ++ + E Y + G++ NLSSPKQL +LF +L P Sbjct: 516 EKAGIAADLRLLTELQSQFGDQIRDAAEAAYAVIGKQINLSSPKQLQVVLFEELGMPKTK 575 Query: 644 KTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 +TKTG + T A L+ + C ++P ++++L R ++++K T D L N + R+HT Sbjct: 576 RTKTG-YTTDADALQSLFCKTEHPFLQHLLTHRDVTRLKVT-VDGLLNAVAA-DGRIHTT 632 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK----KLISADYSQIELRIL 758 ++ TGRL+S EPNLQNIPI+T+ G++IR AF+ +L++ADYSQIE+RI+ Sbjct: 633 FNQTIATTGRLSSTEPNLQNIPIRTNAGRQIRDAFVVGSENNGYTELMTADYSQIEMRIM 692 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH+++ L + F D+H VA+ FG+ IE ++P++RR K +++ + YG+S + LA Sbjct: 693 AHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAYGLSAYGLA 752 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 TQL+I EA +++YF RF G+ +Y+ R++GY T+ GRR + E++S Sbjct: 753 TQLKISTEEAKLQMEQYFARFGGVRDYLMDVVEQARKDGYTSTVLGRRRYLPELDSSNRQ 812 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 IR ERAA+NAPIQGSAADI + AMI+V KSL+ KLA++MLLQ+HDEL+FEV E Sbjct: 813 IREAAERAALNAPIQGSAADIIKVAMIAVDKSLKQAKLASRMLLQVHDELLFEVAIGERE 872 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ M A L VPL+V++ +W Sbjct: 873 QIEAMVREQMGSA----YPLDVPLEVSVGFGRSW 902 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 114/294 (38%), Positives = 157/294 (53%), Gaps = 14/294 (4%) Query: 4 ENH----LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 E+H L L+DG+S +RAFYA P + K GL NA+ GF ML LL +E Sbjct: 7 EDHTKPMLMLLDGNSLAFRAFYALPTENFKTRGGLTTNAVYGFTAMLINLL----REEAP 62 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H A FD TFR+E Y YKANR IP Q+ + + A GI GFEAD Sbjct: 63 THIAAAFDVSRKTFRSECYAGYKANRSSIPAEFHGQIDITKEVLGALGITVFAEAGFEAD 122 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGI 174 D+IAT AE EG+ V +++ D+D +QLVS T LY V E + E VI+K+G+ Sbjct: 123 DLIATLATQAENEGYRVLVVTGDRDALQLVSNDVTVLYPRKGVSELTRFTPEAVIEKYGV 182 Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 P + L AL GD DN+PGIPG+G KTAA + +YG+L+ ++ N ++ K Sbjct: 183 TPAQYPDLAALRGDPSDNLPGIPGVGEKTAAKWIVDYGSLQGLVDNVESVRGKVGEALRT 242 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 A R +R+L L DVP+ + L L+ + R+ LEF L +R+ Sbjct: 243 HLASVVR-NRELTELVKDVPLVQTSDTLRLQPWDRDRIHRLFDNLEFRVLRDRL 295 >gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2] gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2] Length = 942 Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 180/490 (36%), Positives = 270/490 (55%), Gaps = 17/490 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D L +Y+LDS RS D IA +LS + ++ P D S + Sbjct: 465 DTTLAAYLLDSARSHFDDGYIADTYLSVSLPP--ARGEAGAPTDAPVASARAAAVARAAR 522 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 L L LR +V+ ++ P++ V+ ME TG+ +D LK +S + + Sbjct: 523 EPLARALELR------GAKNVFWDIETPLVPVLVAMERTGMLVDPGCLKDLSEGLESQID 576 Query: 608 SLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGD 664 L I L+G+ FN+SSP QL ILF + P+ KT G + T A+ L+++ D Sbjct: 577 ELAVRIRALAGDSDFNISSPMQLSHILFDVMGLPTKGLKKTHRGYYSTNARVLDEL-AQD 635 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 N +++ ILE+R+ +KIKSTY D+L + ++ RVHT Y+ T TGRL+S PNLQNIP Sbjct: 636 NELVRLILEYREKTKIKSTYLDTL-GPLRRQDGRVHTTYNQTITATGRLSSSNPNLQNIP 694 Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 +++LG ++ AF + ++ DYSQIELR+LAH++ L + F D H AA Sbjct: 695 TRSELGHTVKTAFSAGEGALFLAVDYSQIELRLLAHLSGDEHLIRAFREGEDFHAETAAR 754 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +FGV +++V+P++R AK +NF I+YG F L+ L IP SEA + I RYF +PG+ Sbjct: 755 VFGVPVDEVTPRLRSRAKAVNFGIVYGQQAFGLSQTLDIPVSEAQEMIDRYFEAYPGVRA 814 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 ++++T + GY ET+FGRR E+ ++ R+ ER A+N P+QGSAADI + AM Sbjct: 815 FLDRTVAEAAERGYAETMFGRRRPIPELRMKNATQRSFGERTAMNHPMQGSAADIIKIAM 874 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 V + L L KM+LQ+HDEL FE P E+ S ++ ME + L+VPL Sbjct: 875 RRVAERLHGGDLHAKMILQVHDELDFECPIAEVADVSAMVREEMEGV----VKLKVPLIA 930 Query: 965 NIKVSNNWQE 974 ++ W + Sbjct: 931 DVSTGVTWAD 940 Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/284 (32%), Positives = 149/284 (52%), Gaps = 10/284 (3%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 +VDG+S ++RAF+A P DG P NA+ GF NM K++ + IA V FD Sbjct: 32 VVDGNSLMHRAFHAIPPSMNAPDGRPTNAVFGFLNMFLKMVDAFHPDGIA----VAFDKG 87 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 R E+ P YKA RP + E L Q P+++ + IP +E G+E DDI+ T + Sbjct: 88 KPLVRMEMLPSYKAQRPPMDEDLHVQFPMIKQLLEHLSIPILEAAGWEGDDILGTLARLG 147 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDT---VKEEKIDIEHVIKKW--GIPPEKMVCLQ 183 E+EG + +I+ D+D+ QL + + T + + ++ V++ GI P + Sbjct: 148 EQEGLDMLLITGDRDMYQLTTEHVKIVGTKRGLSDVQLMTPQVVEDLYHGITPALVPDFY 207 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 L GDS DNIPG+PGIG K A+ L+ YG+L+ ++ +A + K EN+ + + A LS Sbjct: 208 GLKGDSSDNIPGVPGIGPKKASALIMRYGSLDEVIAHAEEVP-GKMGENLRAHIDDALLS 266 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 R++ ++TD P+ + + L + + L L + NR Sbjct: 267 RRVATIQTDAPVELDMRELSFPAFDAHAVHDALGELGIMAMQNR 310 >gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS] gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS] Length = 920 Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 182/513 (35%), Positives = 300/513 (58%), Gaps = 25/513 (4%) Query: 473 KLVLHRYGISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-----L 521 KL +H ++ RG++ D L +Y++ G+ S + ++ L Y R+E+ Sbjct: 415 KLAMH--DLAGRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLS---LRYLRRELRADNPA 469 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + S + D Q + I + +L L L +L + R++ P+ V++ Sbjct: 470 QQQLSLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSLLGRMELPVQRVLA 529 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +ME TGI +D D L+Q+ +E + + E Y + G++ NL SPKQL +LF +L+ P Sbjct: 530 EMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELEMPK 589 Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 +TKTG + T A L+ + + +P ++++L R +++K T D L N + R+H Sbjct: 590 TKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAS-DGRIH 646 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759 T ++ TGRL+S EPNLQNIPI+T+ G++IR AF+ ++++ADYSQIE+RI+A Sbjct: 647 TTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYTEVMTADYSQIEMRIMA 706 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+++ L + F D+H VA+ F V I++V+P +RR K +++ + YG+S + LA Sbjct: 707 HLSQDAGLIEAFNTGEDLHSFVASRAFDVPIDEVTPDLRRRVKAMSYGLAYGLSAYGLAA 766 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL+I EA + +YF RF GI +Y+ + R++GY T+FGRR + E++S ++ Sbjct: 767 QLKISTEEAKVQMDQYFARFGGIRDYLRDVVDQARKDGYTSTVFGRRRYLPELDSSNRNV 826 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ERAA+NAPIQGSAADI + AMI V ++++D L+++MLLQ+HDEL+FEV + E T Sbjct: 827 REAAERAALNAPIQGSAADIIKVAMIDVDQAIKDAGLSSRMLLQVHDELLFEVADGERDT 886 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ M A L VPL+V++ +W Sbjct: 887 LEKLVRDKMGSAY----ALDVPLEVSVGYGRSW 915 Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 113/305 (37%), Positives = 161/305 (52%), Gaps = 20/305 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG+S YRAFYA P + K GL NA+ GF ML LL++ + SH A F Sbjct: 34 LMLLDGNSLAYRAFYALPAENFKTQGGLTTNAVYGFTAMLINLLRDEQP----SHVAAAF 89 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR + YP+YKA R P+ Q+ + + A GI + GFEADDIIAT Sbjct: 90 DVSRQTFRVDKYPEYKAGRSSTPDEFRGQIDIAKEVLVALGIAVLAEPGFEADDIIATLA 149 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 AE EG+ V +++ D+D +QLVS T LY + + V +K+G+ P++ Sbjct: 150 TQAEGEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSDLTRFTPDAVQEKYGLTPQQYPD 209 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238 AL GD DN+PGIPG+G KTA + EYG+L+ ++ N ++K K R N+ Sbjct: 210 FAALRGDPSDNLPGIPGVGEKTATKWIAEYGSLQALVDNVDQVKGKVGDALRANLSHVV- 268 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 L+R+L L DVP+ + L ++ + +L LEF L +R+ T A Sbjct: 269 ---LNRELTDLVKDVPLPHTPDTLRVQPWDRDQLHRLFDDLEFRVLRDRLFETL----AA 321 Query: 299 IEPVV 303 +EP V Sbjct: 322 VEPEV 326 >gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702] gi|167655810|gb|EDR99939.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702] Length = 829 Score = 309 bits (792), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 154/398 (38%), Positives = 244/398 (61%), Gaps = 7/398 (1%) Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P+ V+ ME G+ ID D +K E+ + + IY+ +G +FN+ SPKQLG +LF Sbjct: 435 PLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGYEFNIGSPKQLGSVLF 494 Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 KL PS KTKTG + T A LE + +PI+ I E+R L+K+++TY L + + Sbjct: 495 EKLALPSAKKTKTG-YSTNADVLESL-MDKHPIVPLITEYRALTKLQNTYVTGLLKVVGE 552 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754 R+H+ + T TGR++S EPN+QNIP++T LG+++RR F + L+ ADYSQIE Sbjct: 553 -DGRIHSTFKQTETRTGRISSAEPNIQNIPVRTPLGREMRRFFTAKDGCLLVDADYSQIE 611 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LR+LAHI+ + + F + +DIH + A+++F IE V+P +R AK +NF I+YGI Sbjct: 612 LRVLAHISGDEIMKKAFLDGVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGA 671 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 F L+ + + +A++YI+ Y ++ GI Y+E+T +++GYVET+FGRR + E+ + Sbjct: 672 FSLSKDIGVSVPKASEYIRSYLSKYSGIAHYMEQTVAKAKRDGYVETMFGRRRYIKELAA 731 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 +++ ER A N PIQG+AADI + AMI V+ L++ L +++LQ+HDEL+ E E Sbjct: 732 KNKNLQAFGERVAKNTPIQGTAADIIKIAMIKVYNRLKESGLDARLILQVHDELIVEAKE 791 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + + ++ ME A + L VP+ V++ + W Sbjct: 792 DCAEKVALLLKEEMENA----VKLTVPMTVDVNIGKTW 825 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 102/289 (35%), Positives = 163/289 (56%), Gaps = 16/289 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DG+S + RAFY +L+ G+ NA+ GF N L L ++ + IA V FD Sbjct: 3 FLIIDGNSILNRAFYGIRVLTNSR-GVATNAVTGFMNTLLMLEKDVNPDMIA----VAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A+TFR+++Y YKANR +PE L QLP ++ A GI IE +GFEADDII T + Sbjct: 58 LKALTFRHKMYDGYKANRKGMPEDLAQQLPYMKKIITAMGITIIEKEGFEADDIIGTVSA 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK--EEKIDIEH----VIKKWGIPPEKMV 180 + T+ + D+D QLV+ Y TV+ + K DI + +++++G+ P++M+ Sbjct: 118 ACADKKIPCTVSTGDRDSFQLVND----YVTVRLAKTKGDIYYTPDVIMEEYGVTPKQMI 173 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN-ASRIKQKKRRENILEYAET 239 ++AL GDS DNIPG+PGIG KTA L++E+ +++ + N S + K R + E+ Sbjct: 174 EVKALMGDSSDNIPGVPGIGEKTALSLIKEFASVDGVYENIGSTLITKGVRTKLENGKES 233 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +SR+L + PI L H + ++ + L L LE K++ ++ Sbjct: 234 CYMSRQLAEICLTAPIDTELSHYVPKERDDAELARLLSELEMYKMLQKL 282 >gi|313115485|ref|ZP_07800950.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622195|gb|EFQ05685.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii KLE1255] Length = 864 Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 161/408 (39%), Positives = 245/408 (60%), Gaps = 9/408 (2%) Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSP 626 +Y ++ P+ V++ M TG+ +D+D ++Q ++ L + I+ +G FN +SP Sbjct: 463 LYNEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLRTELEQVLTRIHMETGSASFNPNSP 522 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG++LF + P G KT+ G W T A+ LE + D P++++IL++R K+ STY + Sbjct: 523 KQLGEMLFDTMGLPHGKKTQRG-WSTDAETLESLR--DYPLVEDILQYRAYQKLNSTYVE 579 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 L I + R+H+ ++ TGRL+S PNLQNIPI+T+LG ++R FI+ P L+ Sbjct: 580 GLLKVIGE-DGRIHSTFNQTEARTGRLSSDNPNLQNIPIRTELGSQLRAYFIAKPGCVLV 638 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 ADYSQIELRILAHI + Q F N DIHR AA+I+G+ E+V+ ++R AK INF Sbjct: 639 DADYSQIELRILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQEEVTSRLRSSAKAINF 698 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YG + LA + + EA ++K Y FP + Y++KT + GYV T+FGRR Sbjct: 699 GIMYGKGAYSLAKDIGVSVKEADAFLKNYLAAFPKVSGYMDKTIADAKACGYVSTLFGRR 758 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 E+ S ++R+ ER A N PIQG+AAD+ + AM+ V K L + K+ ++++L +HD Sbjct: 759 RALPELASSNFNVRSSGERMARNTPIQGTAADVIKLAMVRVWKRLRNEKMESRLILTVHD 818 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EL+ E P+ E A+QI+ ME C + VPL ++ NW E Sbjct: 819 ELIVEAPQAEAEKAAQILREEME-GC---VQYAVPLSTDVHAGKNWLE 862 Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 113/300 (37%), Positives = 162/300 (54%), Gaps = 17/300 (5%) Query: 1 MQKEN---HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 MQ N L ++DG+S RAF+ LL+ K DG NAI GF N+L LL KE Sbjct: 1 MQWRNTTMRLLVIDGNSIANRAFFGIKLLTTK-DGRYTNAIYGFLNILLSLL----KECE 55 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 AV FD A TFR+++Y YKA R +PE L Q+P+++ G + +G+EA Sbjct: 56 PDEVAVAFDLKAPTFRHKMYDGYKATRHGMPEELAQQMPVLKELLADLGYRTVTAEGWEA 115 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTC--LYDTV----KEEKIDIEHVIKK 171 DDI+ T + + D+D +QLVS TT L TV K +D++ + +K Sbjct: 116 DDILGTLAAACAARKDDCFLATGDRDSLQLVSDTTTVLLAATVMGRSKTVTMDVDAIQEK 175 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKR 229 +GI P +++ +++L GD+ DNIPG+ GIG KTA L+Q +G LE + I+ IK K+ Sbjct: 176 YGIQPRQLIEVKSLMGDASDNIPGVKGIGEKTALTLVQNFGTLEGVYEHIDDKLIK-PKQ 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 RE++LE E A+LS L +RTD PI + + N + L+ LE LI R Sbjct: 235 REHLLECREMAQLSHTLGTIRTDAPIDTAEGTYTVGEGNKAEAVRLLQELEIHSLIPRFG 294 >gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c] gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c] Length = 971 Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 175/521 (33%), Positives = 285/521 (54%), Gaps = 20/521 (3%) Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K H++K L L G ++ G D L +Y+ G+ S D+ + L Y +E+ Sbjct: 458 KAAHDVKGPMLALAELGFTLAGVTSDTALAAYLALPGQRSFDLGDLV---LRYLHRELKA 514 Query: 523 SRKSS-------IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 S + ++ + +S E + + + +L L L + ++ P Sbjct: 515 DEAPSDGQLTLDVEVEGVEESAEAEVDVVRARAVGELADALDGDLERRSAARLLRDIELP 574 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 ++ V++ ME GI D + L + ++ + + E +++ G FNL SPKQL ILF Sbjct: 575 LLTVLAGMERAGIAADAEYLADLQSQYGTEVTKVVEAAHEIVGRPFNLGSPKQLQQILFE 634 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 +L P K KTG + T A L + ++P+I +L R ++++K+ LP + Sbjct: 635 ELGLPKTKKIKTG-YTTDADALAWLATNSEHPLIPTLLRHRDVARLKTVVESLLP--MID 691 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753 R+HT ++ TGRL+S +PNLQNIPI+T G++IRRAF+ P + L++ADYSQI Sbjct: 692 DAGRIHTTFNQMIAATGRLSSTDPNLQNIPIRTAEGRQIRRAFVVGPGYETLLTADYSQI 751 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 E+RI+AH++ L + F + D+H VAA+ F + + +V P++RR K +++ + YG+S Sbjct: 752 EMRIMAHLSGDAGLIEAFASGEDLHTFVAAQAFNLPVAEVDPELRRRIKAMSYGLAYGLS 811 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + LATQL I EA D ++ YF RF G+ +++ + R++GY ETI GRR + ++ Sbjct: 812 AYGLATQLGIHPDEARDQMEAYFARFGGVRDFLRGVVDQARKDGYTETILGRRRYLPDLT 871 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S S R + ER A+NAPIQGSAADI + AM+ V + L D L +++LLQ+HDELV E+ Sbjct: 872 SDNSQRRQMAERMALNAPIQGSAADIIKIAMLGVDRGLRDAGLRSRLLLQVHDELVLEIA 931 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E A ++ M A + VPL+V++ + W + Sbjct: 932 PGERERAEALVRAEMANAY----TMSVPLEVSVGSGHTWDD 968 Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 134/254 (52%), Gaps = 10/254 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG+S YRAF+A P+ + G P NA+ GF +ML L++ + +H AV + Sbjct: 81 LLLLDGNSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINALRDEQP----THVAVAW 136 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D PA TFR+ Y +YKA R + P + Q+ L+ A +P++ +EADDIIAT Sbjct: 137 DLPAPTFRHAQYAEYKAGRAETPSDFVGQISLIHQVCDALAVPSLSAASYEADDIIATLA 196 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 E G V I++ D+D +QLV+ + T K + + V K+G+ P + Sbjct: 197 TQGEAAGMDVLIVTGDRDALQLVTGQVTVLMTRKGISDMVRYTPDEVEAKYGLTPAQYPD 256 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+P +PG+G KTA +Q++G+L ++ A + K + + R Sbjct: 257 FAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAAMVDRADEVSGKAGQSLRDHLGDVIR 316 Query: 242 LSRKLVMLRTDVPI 255 +R L L DVP+ Sbjct: 317 -NRSLTELARDVPL 329 >gi|269120628|ref|YP_003308805.1| DNA polymerase I [Sebaldella termitidis ATCC 33386] gi|268614506|gb|ACZ08874.1| DNA polymerase I [Sebaldella termitidis ATCC 33386] Length = 885 Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 185/501 (36%), Positives = 288/501 (57%), Gaps = 11/501 (2%) Query: 476 LHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA-QKWLSYTRKEILKSRKSSIPIDKIS 534 L + G+ + + DIML+ YVL + ++ D+ SI ++ K ++ +K ++ D++S Sbjct: 392 LFKSGLEYKDYFDIMLVWYVLGT-EAAQDLESIIFSEFQVLLEKYEVEFKKQNM--DEVS 448 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 + E + S + +L +L +L E L +VYE ++K ++ V++ ME GI ID D Sbjct: 449 PERKAEFLTKRSYYMTRLKEILGHRLEAEGLNNVYENIEKKLVPVLADMEKKGILIDPDY 508 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 + E+ NL +E+NIY L+GE+FN++SPKQL +ILF K+ KTKTG + T Sbjct: 509 FGKYGNELKNNLAEIEKNIYGLAGEEFNINSPKQLSEILFEKMMLDPVKKTKTG-YSTDV 567 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 + LE + + + ILE+R +K+ +TY + LP + R+HT + T TGRL+ Sbjct: 568 EVLEVLAAQGVEVAEKILEYRGYTKLLTTYVEPLP-KLADSENRIHTTFHQNGTATGRLS 626 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S PN+QNIP+KTD G KIRR F+S IS DYSQIELR+LA +++ L ++ Sbjct: 627 SSNPNIQNIPVKTDEGIKIRRGFVSEEGWSFISFDYSQIELRVLAELSEDETLILAYQKD 686 Query: 775 LDIHRMVAAEIF-GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 D+H + A ++F + E VS + R AK INFSI+YG +PF L+ +L+IP +A YI Sbjct: 687 KDLHDLTARKLFFKTDEEPVSREERSIAKVINFSILYGKTPFGLSKELKIPMGDAKLYIN 746 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 +YF +P + ++ + NG+VET++G R + INS +I +R A+N +Q Sbjct: 747 KYFEEYPRVRTFLNSVLQEAKLNGFVETLYGTRRYITGINSSNKNIEAQADRMAVNTVVQ 806 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 G+AA+I + M+ +++ +D K MLLQ+HDEL+FEV E + + I + ME Sbjct: 807 GTAANIIKIVMVKLYEEFKD-KEDINMLLQVHDELIFEVKNESVDKYLKEIDNIMENTIK 865 Query: 954 PKINLRVPLKVNIKVSNNWQE 974 K V L N V NW E Sbjct: 866 LK---NVRLAANGNVGKNWGE 883 Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/285 (32%), Positives = 140/285 (49%), Gaps = 14/285 (4%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D S+ +YR +A + R G A GF N L ++ KE + D Sbjct: 6 ILDTSAIMYRTHFAL-MGMRNSKGKATGATYGFINTLNLII----KEFSPDYLVACLDVK 60 Query: 69 AVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 R +YKA+R +PE L+ Q+P + A+ IP ++ G+EADD+IAT Sbjct: 61 RSELKRTSELTEYKAHREDMPEELVYQIPKIMEVLDAYNIPKYKVDGYEADDVIATLAKK 120 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK------IDIEH-VIKKWGIPPEKMV 180 + V I++ DKDLMQL+ + K + I E V++ G+ P++++ Sbjct: 121 FSDDNNEVFIVTGDKDLMQLIKDNINIALLGKGDGKSQFKYIQTEQDVVEYLGVRPDQVI 180 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L L GD D IPGI GIG KT L+ +YGNLE + N IK KR+E + E A Sbjct: 181 DLFGLMGDKSDGIPGIQGIGPKTGVELISKYGNLETLYENIEEIKG-KRKEKLENEKENA 239 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 LSR+L + D+ + E L E+ N +LI K +EF + + Sbjct: 240 FLSRELATVHMDLDVEYNKEKLKYEEKNMDKLIPLYKEMEFKRFL 284 >gi|291542252|emb|CBL15362.1| DNA polymerase I [Ruminococcus bromii L2-63] Length = 854 Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 170/485 (35%), Positives = 280/485 (57%), Gaps = 23/485 (4%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 DI L +Y+++ SS D Y+ K + S + ++P+ +D Q +++ E Sbjct: 388 DIELAAYLIEP--SSKD----------YSDKNLCASYEIALPV--CTDEQNEKY--EAFA 431 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 +L L K+ + ++ P+ V+++ME G+ +D+ ++ +S + Sbjct: 432 CYAELCEKLGDKIKAHGQEKLLSEIEIPLAKVLARMENIGVCVDRQGIESYGEMLSAQIK 491 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 LE IY+ +G +FN++SPKQLG +LF L P KTK+G + T A+ LE + ++P+ Sbjct: 492 ELETAIYESAGCEFNINSPKQLGVVLFENLGLPCKKKTKSG-YSTNAEVLESLRY-EHPV 549 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 ++ +L +R LSK+ STY + L I R+H+ ++ T TGR++S EPNLQNIP++T Sbjct: 550 VEMVLRYRTLSKLNSTYCEGLLKVI-ADDGRIHSNFNQTETRTGRISSTEPNLQNIPVRT 608 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 +LG+++R+ F + L+ ADYSQIELR+LAHI+ + + F+++ DIH + A+++F Sbjct: 609 ELGREMRKFFCARDGWALVDADYSQIELRVLAHISGDKNMIKAFKDNEDIHAITASQVFN 668 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 + ++ V+P MR AK +NF I+YGI F LA + + EA YI+ Y + G+ Y++ Sbjct: 669 MPLDMVTPIMRSRAKAVNFGIVYGIGAFSLAKDIGVSNKEAKHYIESYLAHYSGVDSYMK 728 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 +GYVET+FGRR + E+ S K IR ER A N PIQG+AADI + AMI V Sbjct: 729 NVVEKANADGYVETMFGRRRNLPELTSSKHMIRAFGERVARNMPIQGTAADIIKIAMIKV 788 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 + ++ L +++LQ+HDEL+ E P++E + I+ ME A + + VPL + Sbjct: 789 DERMKAENLRARLVLQVHDELIVEAPQDESMRVALIVQEEMENA----VKMSVPLTADAA 844 Query: 968 VSNNW 972 + W Sbjct: 845 IGRTW 849 Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 103/311 (33%), Positives = 163/311 (52%), Gaps = 17/311 (5%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L VDG+S + RAFY L+ K DG NAI GF ML+K+ +++A + F Sbjct: 2 RLLAVDGNSIVNRAFYGIRPLTTK-DGQFTNAIYGFLTMLYKIKNEENPDAVA----IAF 56 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATY 124 D TFR++ Y YKA R +PE L Q+ PL +L T G + +GFEADDI+ T Sbjct: 57 DLKTPTFRHKAYAGYKATRKGMPEELASQMEPLKKLLT-LLGYRLVTCEGFEADDILGTL 115 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI----EHVIKKWGIPPEKMV 180 E+ G I + D+D +QLVS T ++ + K DI E +++ +G+ P++++ Sbjct: 116 AKACEENGNECVIATGDRDSLQLVSDKTSVH--LCSNKQDILYTPEKILETYGVTPKELI 173 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR-RENILEYAET 239 ++A+ GD+ DNIPG+ GIG K A L+Q Y +E I + ++ K R+ + E Sbjct: 174 EIKAIQGDTSDNIPGVAGIGPKGAGDLIQRYHTVEYIYDHLDELEIKDGVRKKLTASKEN 233 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A LSR L + + P+ +E+ +++ + F+ LE LI + D N Sbjct: 234 AILSRMLGEINCNAPVDTNVENYVVDMKDADECAGFMAKLELFSLIEKYGIKVD---KNA 290 Query: 300 EPVVLDINTTE 310 +P ++ N+ E Sbjct: 291 KPEKVEKNSLE 301 >gi|310778664|ref|YP_003966997.1| DNA polymerase I [Ilyobacter polytropus DSM 2926] gi|309747987|gb|ADO82649.1| DNA polymerase I [Ilyobacter polytropus DSM 2926] Length = 903 Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 176/453 (38%), Positives = 277/453 (61%), Gaps = 12/453 (2%) Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K S +P++ + E ++ S + ++ L+ ++ +E + ++ ++ +I ++S Sbjct: 461 KEDPSKLPVE-----EYGEFMMKRSESLYDIYKDLKNRIELEDMHDLFYNVEMKLILILS 515 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +ME GI ID + ++ S E+S L L++NI+ +S E+FNL+SPKQL +ILF KL Sbjct: 516 KMEQEGIAIDPEYFREFSLELSDKLQELKKNIFKISEEEFNLNSPKQLAEILFMKLNIEP 575 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +KTKTG + T LE + I + IL++R+L+K++STY D+LP ++R R+HT Sbjct: 576 VSKTKTG-FSTNVDVLETLRDRGEKIAEYILDYRKLTKLQSTYVDALPKLADERN-RLHT 633 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 ++ TGRL+S PNLQNIP+K+D G KIRR FIS L++ DYSQIELR+LA + Sbjct: 634 TFNQTGAATGRLSSSNPNLQNIPVKSDEGIKIRRGFISDKGNTLLAIDYSQIELRVLAEL 693 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 +K L + + + LD+H + A +IF ++ + V+ R AK +NFSIIYG +PF L+ +L Sbjct: 694 SKDETLIKAYSDGLDLHDLTAKKIFDIDTD-VTRSQRTMAKIVNFSIIYGKTPFGLSKEL 752 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I + +A +YIKRYF ++P + E EK + GYV+T FGR+ D I+S +I+ Sbjct: 753 GISQKDAKEYIKRYFEQYPRVKELEEKIIKNAEETGYVKTYFGRKRSVDGISSKNGNIKK 812 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 +R A+N IQG+AADI ++ MI + K ++ K KM LQ+HDEL+FEV +E + + Sbjct: 813 QADRMAVNTVIQGTAADILKKVMIEIDKKIK-DKNDIKMNLQVHDELIFEVKDESVEKYA 871 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +I + ME + K V L+ N+ NW E Sbjct: 872 DLIKNIMENSIKFK---NVKLEANVAQGKNWAE 901 Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 141/292 (48%), Gaps = 18/292 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 L+D S+ +YRAF+A K++ P A+ GF N L ++ + I + F V Sbjct: 6 LLDVSAIMYRAFFAHMNFKTKNE--PTGAVFGFTNTLLSIIDEFSPDYIGAAFDV---KR 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 + R+E Y DYK+ R IPE L+ Q+P + FGI +I G EADD+I Sbjct: 61 STLKRSEKYKDYKSARKPIPEDLVTQIPRIEDLLDCFGIEKFKIDGHEADDVIGALAKKL 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPT---TCLYDTVKEEKIDI----EHVIKKWGIPPEKMVC 181 + V II+ DKDL QLV L +E+ I E V+++ G+ P + Sbjct: 121 SADNIEVYIITGDKDLSQLVDDNINIALLGKGEGKERFKILRTEEDVVEQLGVKPNDIPD 180 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-----KKRRENILEY 236 L L GD+ D IPG+ IG K A ++LQ+Y NLE + + + K +NI E Sbjct: 181 LFGLIGDASDGIPGVRKIGSKKALVMLQKYKNLEGVYNHIDELSDLPGIGKGLVKNIEED 240 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + A LSR L + ++P+ H + RL + K LEF LI ++ Sbjct: 241 KDLAFLSRDLATIDLEIPVDYD-PHKLQHGIEKNRLYNLFKNLEFKALIKKL 291 >gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1] gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1] Length = 898 Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 181/516 (35%), Positives = 296/516 (57%), Gaps = 17/516 (3%) Query: 465 IGHNIKYD-KLVLHRYGIS-MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 +G N+K+D L+ ++YG+ + F D M+M+++ D G S + S+AQK+ Y K + Sbjct: 392 VGQNLKFDLSLLYNQYGMEEVLPFADTMIMAWLTDPG-SRVGLDSLAQKFFKYDMKPFKE 450 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER---LDKPMIDV 579 K ++ + +A E++ + L+ ++ K+ + L H+ + ++ P I+V Sbjct: 451 MVKKGENFSHVNIADATFYAAEDAWMTFLLYGAIKKKMELSSLTHLLKEAKDVEYPFINV 510 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 + +ME GI++DQ L+ + +S++L L I++LSG +FN+ S +QLG +LF L Sbjct: 511 LIRMERLGIKVDQVKLETLKKTLSEDLHRLTSEIHELSGSEFNIRSTQQLGVVLFQHLGL 570 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK-RTQR 698 G KTKTG + T L+ + ++P+I ILE+R+ K+ STY + L K R Sbjct: 571 KGGKKTKTG-YSTNEAVLQSLKH-EHPVIGKILEYREYHKMLSTYVEPLLKLAKKDEKSR 628 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 ++T + T TGRL+S +PNLQNIP+++ LG+ +R AF++ KL+S DYSQIELR+L Sbjct: 629 IYTSFIQTGTATGRLSSKDPNLQNIPVRSTLGRSVREAFVAKEGYKLVSIDYSQIELRLL 688 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH +K L + F DIH A ++FG E+ + R AK++NF ++YG+ P +L+ Sbjct: 689 AHFSKDAALMEAFNKGTDIHMATAVKLFG---EEEAKAKRNFAKSVNFGLLYGMGPKKLS 745 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 +L I +EA + I YF FP + ++E + V+ +GYVET+ RR +D N+ Sbjct: 746 DELGITSAEAKEIIANYFASFPTVKNFLEGIQERVKIDGYVETLLKRRRIFDYENA-NGM 804 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 + R ++N QGSAAD+ + +M + + D L MLLQIHDEL+FE+ E+++ Sbjct: 805 QKAAYMRESVNTVFQGSAADLIKLSMNDIDSMIIDEALEAHMLLQIHDELIFEIREDQVE 864 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 S+ VH ME L VPL ++ V ++W E Sbjct: 865 KISKRFVHVMEHIW----ELEVPLVCSVSVGDSWGE 896 Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 101/261 (38%), Positives = 149/261 (57%), Gaps = 6/261 (2%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D F +R++YA P L R +G P + GF N L+ + ++ + D Sbjct: 6 IIDTFGFFFRSYYALPPL-RNSEGFPTGLLTGFIN----LVDSLHRDHGTDYLVFALDSK 60 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFRNEIYP+YKANR PE L QLP+ + G + +GFEADDII T T A Sbjct: 61 GPTFRNEIYPEYKANREAPPEDLTKQLPVAIRWVEKMGFANLAKEGFEADDIITTVTKFA 120 Query: 129 EKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 ++ V ++S DKDL QL+ +YD++K ++ID I+K+G+ P+ V QA+ G Sbjct: 121 REQDMKVKVVSHDKDLYQLIDDGLVVMYDSIKRKEIDEAACIEKFGVNPKDFVDFQAIVG 180 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247 D+ DN+PG+ GIG K AA L+ E+ LENI N + + ++ +LEY E+A LSR+LV Sbjct: 181 DASDNVPGVKGIGVKGAAKLINEFHTLENIYANIEKCGTPRIQKLLLEYKESAFLSRELV 240 Query: 248 MLRTDVPITIPLEHLILEDCN 268 +R DV + L + E+ N Sbjct: 241 KMRDDVYDDLDLSKFVFEERN 261 >gi|187250908|ref|YP_001875390.1| DNA polymerase I [Elusimicrobium minutum Pei191] gi|186971068|gb|ACC98053.1| DNA polymerase [Elusimicrobium minutum Pei191] Length = 862 Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 190/532 (35%), Positives = 292/532 (54%), Gaps = 26/532 (4%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502 + LT+E L +++ N+ LKI +++K+ L + D+ L +Y L+ G Sbjct: 351 DNLTQEELLKIEELANNKQILKISYDVKFTLRALDVTPKEIINCFDVRLAAYSLNPG--- 407 Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 A I K L+ +++ I +E + I L +L L Sbjct: 408 ---ADIGFKALAAQYLDVI-----------IEPKDEKEFLTLQNQYIWSLKEVLERDLKE 453 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 + ++ L+ P+I V+ ME G+ +D+ L+ S + + +++ +I + + N Sbjct: 454 KDQFKIFNELELPLITVLLAMEEIGVLVDKAWLENFSKTLEGEIAAIQNDINKDAQREIN 513 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 ++SPKQLG +LF +LK PS KTKTG + T + L+Q+ +PI+K ILE+R +K+KS Sbjct: 514 VNSPKQLGALLFDQLKLPSVKKTKTG-YSTDEEVLQQL-VNLHPIVKKILEYRSNAKLKS 571 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D+L + RVHT+ T+TGRL+S PNLQNIPI+T G+ +RRAF++ Sbjct: 572 TYVDNLI-MLADGNSRVHTYLDQTGTVTGRLSSSSPNLQNIPIRTPKGRMLRRAFVAEGG 630 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 K L+S DYSQI+LR+LAH ++ + L F+ DIH AAE+FGV E VS +MR AK Sbjct: 631 KTLLSVDYSQIDLRLLAHESQDSVLVNAFKEGGDIHTKTAAEVFGVMREMVSDEMRSSAK 690 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 INF IIYG P L+ L I EA +YI YF + G+ E+I+K R+ GYV+T+ Sbjct: 691 AINFGIIYGQGPMGLSQNLNISVREAKEYIDNYFAVYKGVREWIDKNIALARERGYVKTL 750 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 G + E + + +RAAIN +QG +AD+ ++AM + + ++ KMLL Sbjct: 751 LGHIRYLPEFKMGSGHMASFAQRAAINTIVQGGSADVIKKAMADIFNHYKGTEV--KMLL 808 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q+HDEL+FE+PE+ + + +I + ME I L+VPL K NW E Sbjct: 809 QVHDELIFELPEKNLLKEAAVIKNKMEHT----IELKVPLLAEAKTGVNWYE 856 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/290 (33%), Positives = 152/290 (52%), Gaps = 19/290 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 +++ D +F++R ++A P LS GL V A+ GF L KL++ + + AV FD Sbjct: 8 IYIADAHNFLHRNYHALPKLSTSQ-GLEVGALYGFVRWLVKLVEEKKPH----YVAVCFD 62 Query: 67 -YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 T R +++ DYKA+R + E LL QL L R G+ +QG EADDII Sbjct: 63 SRGGSTKRKKMFSDYKAHRKPVDEALLTQLQLAREVVSGMGLKVFAVQGIEADDIIG--- 119 Query: 126 YIAEK---EGFAVTIISTDKDLMQLVSPTTCLY--DTVKEEKIDIEHVIKKWGIPPEKMV 180 +IA+K EG + ++DKD +QL++ L+ KE ++V +K+ I + + Sbjct: 120 FIAKKSVAEGADAVLATSDKDALQLLNEHIKLWPAGAAKESLKGPDYVKEKFNIAQKYLT 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINAS----RIKQKKRRENILEY 236 A+ GDS DN+PG+ G+G KTAA L+ +G LE+I+ A +IK K + I++ Sbjct: 180 DYLAIVGDSSDNVPGVAGLGPKTAAELINNFGYLEDIIKEAKAGNPKIK-KGAAQKIIDN 238 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 A LS++LV L ++P+ LE + +L EF L++ Sbjct: 239 EAVAILSKQLVTLDENIPMDFTLEDAVFSPPAPAKLSELFAKYEFKNLLS 288 >gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] Length = 901 Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 178/541 (32%), Positives = 300/541 (55%), Gaps = 21/541 (3%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE------DIMLMSYVL 496 TLT++ L ++ +E+ K+GH++K LH G+ RG+ D L +Y++ Sbjct: 370 TTLTEDDERALGEWLADENIHKVGHSLKK---ALH--GLRSRGWRLAGLVMDTELAAYLV 424 Query: 497 DSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL 555 G+ S + + ++L R E ++ +D SD+++ + + +L+L Sbjct: 425 RPGQRSFKLDDLVLRYLGKELRSEGVEGDGQLSLLDTDSDNEIVRRELVRARAVLELSSA 484 Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615 L +L + ++ P++ +++ +E GI +D D+L ++ A + + E Y Sbjct: 485 LSAELAAIGATTLLADIELPLLSMITDLEAAGIAVDIDVLTELEAHYANRVKQATEQAYS 544 Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEW 674 + G++ NL SPKQL +LF +L P +TKTG + T A L+ + ++P ++ +LE Sbjct: 545 VIGKQINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADALQTLYEKTEHPFLQYLLEH 603 Query: 675 RQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734 R +K++ST + L + R+HT T TGRL+S++PNLQNIP++TD G++IR Sbjct: 604 RDATKLRST-VEGLIKAVAD-DGRIHTTLHQTITATGRLSSVDPNLQNIPVRTDEGRRIR 661 Query: 735 RAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 AF+ +L++ADYSQIE+RI+AH++ L + F + D H AA +F V+ +V Sbjct: 662 EAFVVGEGYAELMTADYSQIEMRIMAHLSNDEALIEAFHSGFDFHAATAARVFDVDPTEV 721 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 + + R K +N+ + YG+S + L+ QLRI EA + YF RF G+ +Y+ Sbjct: 722 TGEQRAKIKAMNYGLAYGLSAYGLSQQLRISTEEARALMDEYFLRFGGVRDYLHSVVERA 781 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 + GY ETIFGRR + ++ S R + ER A+NAPIQGSAADI + AM+ VH++L + Sbjct: 782 AKEGYTETIFGRRRYLPDLTSTNRQRREMAERMALNAPIQGSAADIIKVAMLGVHRALAE 841 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 L +++LLQ+HDEL+ EV + E +++ M A L VPL+V++ +W Sbjct: 842 AGLRSRVLLQVHDELMLEVADGEHAQVEELVRREMGSAY----ELSVPLEVSVGYGRSWN 897 Query: 974 E 974 + Sbjct: 898 D 898 Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 105/290 (36%), Positives = 159/290 (54%), Gaps = 17/290 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P R G NA+ GF +ML LL ++ +H AV F Sbjct: 16 LLLIDGHSMAYRAFFAVPADRFRTSTGQVTNAVFGFTSMLINLL----RDEAPTHVAVAF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+E + DYKANR P+ Q+ L++ A IP + ++G+EADD+IAT T Sbjct: 72 DVSRKTFRSETFADYKANRLATPDDFKGQVELIKDVLGALSIPVLAVEGYEADDVIATLT 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY------DTVKEEKIDIEHVIKKWGIPPEK 178 A + + V I + D+D +QLV+ + T LY D V + D E V +K+G+ P + Sbjct: 132 AKAGDD-YEVLICTGDRDALQLVTDSVTVLYPRKGVSDLV---RFDPEGVQEKYGLSPAQ 187 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 AL GD DN+PGIPG+G KTAA ++++G+L ++ +K K E + + + Sbjct: 188 YPDFAALRGDPSDNLPGIPGVGEKTAAKWIRQFGSLGELIDRVDEVKGKV-GEALRSHLD 246 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + L+R+L L DVP+ + + L L+ + + LEF L +R+ Sbjct: 247 SVMLNRQLTELVRDVPLEVTPDDLALKPWDRDAVHRLFDELEFRVLRDRL 296 >gi|218671595|ref|ZP_03521265.1| DNA polymerase I [Rhizobium etli GR56] Length = 452 Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 169/457 (36%), Positives = 266/457 (58%), Gaps = 26/457 (5%) Query: 141 DKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIG 200 DKDLMQLV+ +YD++K+++I I V++KWG+PPEKM+ LQA+TGDS+DN+PGIPGIG Sbjct: 1 DKDLMQLVTANVHMYDSMKDKQIGIPDVVEKWGVPPEKMIDLQAMTGDSVDNVPGIPGIG 60 Query: 201 YKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLE 260 KTAA LL+EYG+L+ +L A+ IKQ KRRE IL E A+LSR+LV LRTDVP+ + L+ Sbjct: 61 PKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANIEMAKLSRELVRLRTDVPLDLDLD 120 Query: 261 HLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVL-----------DINTT 309 L+LE NGP+LI FLK +EFT L RVA DCDA+ IEP V+ D++ Sbjct: 121 ALVLEPQNGPKLIGFLKTMEFTTLTRRVAEVCDCDASAIEPAVVRIEWGDAAHGPDLDAA 180 Query: 310 ENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYT 369 E +A + + + +P L R + + P ++ +Y Sbjct: 181 EPAPVAGGV-----PDVSGPSVPVPPRAKAGVEGAFSPADLAKARAEAFATLPFDHSTYV 235 Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQ-KDDTSFKVETIF 428 I + + +W+ G +F T ++DA ++ + +++ D D T K+ + Sbjct: 236 TIRDLATLDRWIADARDTGLVAFDTETTSLDAMQAELVGFSMAIADNVADPTGTKIRAAY 295 Query: 429 IDLS-----VHTSQDSTGKNTL-TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 + L+ +N + ++ L LK E+ LK+ N+KYD L++ RYGI Sbjct: 296 VPLAHKNGVGDLLGGGLAENQVPMRDALPRLKALLEDAAVLKVAQNLKYDYLLMKRYGIE 355 Query: 483 MRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQ 539 + F+D ML+SYVLD+G +H + +++K+L +T K++ S ++++ D + + Sbjct: 356 TKSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKDVAGSGRANVTFDLVDIDRAT 415 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 +A E+++V L+LWL+L+P+L L VYERL++P+ Sbjct: 416 HYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPL 452 >gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603] gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603] Length = 893 Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 174/528 (32%), Positives = 288/528 (54%), Gaps = 12/528 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQK 511 L+++ + H+ KI H+ K LH + ++G D L +Y+ + S+ + ++ + Sbjct: 373 LRQWLMDPHYPKIVHSAKEAWHALHSFSGGVKGVIADTELAAYLAFPDQRSYGLEDLSIR 432 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 ++S + + S+ + + V+ QL L +L L +Y+ Sbjct: 433 YVSRDITPVAHQAQGSLDLGLDDTDDALRALANRAAVLPQLAQALDAELSDRSLTALYQE 492 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ V++QME G+ +D + L+ + A + ++ ++ G + NL SPKQL + Sbjct: 493 MELPLTVVLAQMEHVGVAVDLEQLRSLDAFFAHQGSEAQKAAFEAIGRQVNLGSPKQLQE 552 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQ--INCGDNPIIKNILEWRQLSKIKSTYADSLP 689 +LF +L P K KTG + T A L + G +P ++++LE+R +K++ T L Sbjct: 553 VLFDQLDMPKTKKIKTG-YTTDAASLADLFVKTG-HPFLQHLLEYRDSTKLRQTVEGLLK 610 Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISA 748 + + RVHT + TGRL+S +PNLQNIPI+T+ G++IR+ F+ L++A Sbjct: 611 SVADD--GRVHTTFQQTVAATGRLSSTDPNLQNIPIRTETGRRIRQGFVVGEGLDTLLTA 668 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIE+RI+AH+++ L F+ D+H V A +FGV+I++V+PQMR K +++ + Sbjct: 669 DYSQIEMRIMAHLSQDDGLISAFQAGEDLHNFVGARVFGVSIDEVTPQMRSKVKAMSYGL 728 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 YG+S F L+ QL I EA+ + YF RF G+ +Y+ R GY ETI GRR + Sbjct: 729 AYGLSAFGLSKQLNISVGEASTLMDDYFTRFGGVRDYLTSVVARARTTGYTETIMGRRRY 788 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 ++ S R ER A+NAPIQGSAAD+ ++AM+ V + L++++LLQIHDEL Sbjct: 789 LPDLTSDNRQRRENAERVALNAPIQGSAADVIKQAMLGVDAAFRSEGLSSRLLLQIHDEL 848 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 + EV E A +I+ M A + L VPL V++ NW + Sbjct: 849 IVEVAPGEQEIAERIVREEMAGA----MQLSVPLAVSVGTGQNWHDAG 892 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/287 (35%), Positives = 157/287 (54%), Gaps = 10/287 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAF+A P G NA+ GF +ML L++N + +H V F Sbjct: 5 LLIIDGHSMAFRAFFALPADKFMTSGGAYTNAVHGFISMLATLIKNEQP----THVGVAF 60 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D A TFR E++P YK R PE Q+ L++ A I +E FEADDI+AT++ Sbjct: 61 DAGAHTFRTEVFPQYKGTRDATPEPFKGQVALIKEVLDAMNIRYLEKDRFEADDILATWS 120 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 A + G V + S D+D +QLV+ T LY V E ++ E V +K+G+ PE+ Sbjct: 121 TCAAEAGMEVLLCSGDRDTLQLVNDHVTVLYPVKGVSELKRYTPEAVEEKYGVRPEQYPD 180 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G++ DNIPG+PG+G KTAA + ++G+L +L +A IK K E + ++ + R Sbjct: 181 LAALVGETSDNIPGVPGVGPKTAAKWVNQFGSLTEVLNSAETIK-GKVGEKLRDHLDQVR 239 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +R++ L TDV + + L ++ + +L LEF L R+ Sbjct: 240 QNREINRLLTDVDLDVMPNDLTVQQWDRNKLHEIFDMLEFRTLRERL 286 >gi|158313878|ref|YP_001506386.1| DNA polymerase I [Frankia sp. EAN1pec] gi|158109283|gb|ABW11480.1| DNA polymerase I [Frankia sp. EAN1pec] Length = 911 Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 176/527 (33%), Positives = 285/527 (54%), Gaps = 11/527 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 L + + K GH++K L L G ++ G D L +Y+ G+ S D+A +A + Sbjct: 392 LGDWLADPDRAKAGHDLKGPMLALAEAGFTLAGVTSDTALAAYLALPGQRSFDLADLALR 451 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 +L K S + +D ++ E + L+L L L + Sbjct: 452 YLHRELKSDAPS-NGQLTLDGSGEADEAEADAIRARAALELADALDGDLERRSAARLLRE 510 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P++ +++ ME GI D+D L ++ + + + + G FNL SPKQL Sbjct: 511 MELPLVTILATMERAGIAADEDHLLELQKHYGGEVSDVAAQAHGIVGRTFNLGSPKQLQQ 570 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF +L P + KTG + T A L + D+P+I +L R ++++K T DSL Sbjct: 571 ILFDELALPKTKRIKTG-YTTDADALAWLATQSDHPLIPVLLHHRDVARLK-TVVDSLIP 628 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISAD 749 I+ R+HT ++ TGRL+S +PNLQNIPI+T G++IR+AF+ + L++AD Sbjct: 629 MIDD-AGRIHTTFNQMIAATGRLSSTDPNLQNIPIRTPQGRQIRQAFVVGQGYETLLTAD 687 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIE+R++AH++ L + F + D+H VAA+ FG+ + +V P++RR K +++ + Sbjct: 688 YSQIEMRLMAHLSGDAGLIEAFASGEDLHSFVAAQAFGLPVSEVDPELRRRIKAMSYGLA 747 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YG+S F LA QL I EA + + YF RF G+ +++ + R++GY ETI GRR + Sbjct: 748 YGLSAFGLAGQLGIAPDEAREQMDAYFARFGGVRDFLRGVVDQARRDGYTETIMGRRRYL 807 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 ++ S + R + ER A+NAPIQGSAADI + AM+ V ++L L++++LLQ+HDELV Sbjct: 808 PDLTSDNTQRRQMAERMALNAPIQGSAADIIKIAMLGVGRALRSRDLSSRLLLQVHDELV 867 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 E+ E ++ M A + VPL+V++ W E Sbjct: 868 LEIAPGERAEVEALVRAEMGSAY----EMSVPLEVSVGAGRTWDEAG 910 Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/287 (32%), Positives = 146/287 (50%), Gaps = 10/287 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P+ + G P NA+ GF +ML +L++ + +H AV + Sbjct: 27 LLLLDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEKP----THVAVAW 82 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D P TFR+ Y +YKA R + P + Q+ L+ A +P + G+EADD+IAT Sbjct: 83 DLPTPTFRHTQYAEYKAGRSETPADFVGQVALIHQVCDALAVPGVSAAGYEADDVIATLA 142 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 A EG V +++ D+D +QLV+ + T K + + V K+G+ P + Sbjct: 143 TQASAEGMDVLVVTGDRDALQLVNERVTVLMTRKGISDMTRFTPDEVQAKYGLSPAQYPD 202 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+P +PG+G KTA +Q++G+L ++ A I K ++ E+ Sbjct: 203 FAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAELVDRADEIGGKT-GASLREHLSNVI 261 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +R L L +VP+ + L L + + L+F L R+ Sbjct: 262 RNRSLTELAREVPLELTPADLRLHPWDREAVHQLFDTLQFRVLRERL 308 >gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces griseus] Length = 889 Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 177/510 (34%), Positives = 297/510 (58%), Gaps = 23/510 (4%) Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 H K +L GI + G D L +Y+L G+ ++ +A + Q+ L T L + Sbjct: 394 HEAKAAFHMLAGRGIELAGIAHDTALAAYLLRPGQRTYALADVYQRHLQKT----LSAAT 449 Query: 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEI 585 + + + +S + ++ + I++L L +L +Y L+ P++ ++++ME Sbjct: 450 EQLSL--LDNSSL----VDQAAAIMELAERLTAELQEIDSFELYTDLELPLVTILARMEA 503 Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLGDILFTKLKFPSGAK 644 TGI +D D+L+ + + E +L+G+ K NL+SPKQL +LF + P K Sbjct: 504 TGIAVDVDILETQKDAFVEQVAEQERAARELAGDDKLNLNSPKQLQTVLFETFELPKTKK 563 Query: 645 TKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 TKTG + T A+++EQ+ + +P + ++L R+ K+K+T + L + R+HT + Sbjct: 564 TKTG-YSTAAKEIEQLAAKNPHPFLDHLLAHRKYQKMKTTL-EGLIKTVQP-DGRIHTTF 620 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762 + TGRL+S EPNLQNIP++T+ G++IR AFI +L++ADYSQIE+R++AH++ Sbjct: 621 NQTVASTGRLSSTEPNLQNIPVRTEAGRQIRSAFIVGDGFDELMTADYSQIEMRVMAHLS 680 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 L + ++ D+H V + +F V +++V+P++RR K +++ ++YG+S F L+ QL Sbjct: 681 ADPGLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLG 740 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 IP EA ++ YF RF G+ +Y+++ R++GY T+FGRR + E+NS R Sbjct: 741 IPAGEAKSIMESYFERFGGVKKYLDEVVAQARKDGYTATLFGRRRYLPELNSDNRLAREN 800 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ERAA+NAPIQG+AADI + AMI V ++L+ K +++LLQ+HDELV EV E + Sbjct: 801 AERAALNAPIQGTAADIIKVAMIRVDRALQGMK--SRVLLQVHDELVVEVAPGEADEVRE 858 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 I+ M+ A I L VPL+V+ +W Sbjct: 859 ILEREMDSA----IELNVPLEVSAGAGKDW 884 Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 151/288 (52%), Gaps = 13/288 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P+ + G NA+ GF +ML ++ ++IA V F Sbjct: 18 LLLIDGHSMAFRAFYALPVDNLSTSGGQHTNAVYGFLSMLSNIVAEEAPDAIA----VAF 73 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E++PDYKA R PE Q+ L+R + GI + + FEADDI+AT Sbjct: 74 DVGRKTFRTEMFPDYKAQREAAPEEFKGQVDLIREVLEVLGITTLSRENFEADDILATLA 133 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 E + + I++ D+D +QLV+ +T + +K + V +K+G+ P + Sbjct: 134 --TEAQDYETLIVTGDRDYLQLVNESTTVLYPMKGVSTLHRFTPSAVEEKYGLTPAQYPD 191 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIP +G KTA + +YG+L +++ +A IK N E E + Sbjct: 192 FAALRGDPSDNLPGIPKVGEKTATKWIVKYGDLASLVEHAEEIKGVVGN-NFRERIEQVQ 250 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRV 288 ++RKL + TD+ + + L ++ + + LEF T L +RV Sbjct: 251 MNRKLTQMITDMDLEVGPNDLAFKEAKVADVAAKFDDLEFGTSLRDRV 298 >gi|121730764|ref|ZP_01682858.1| DNA polymerase I [Vibrio cholerae V52] gi|121627663|gb|EAX60328.1| DNA polymerase I [Vibrio cholerae V52] Length = 317 Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 152/311 (48%), Positives = 208/311 (66%), Gaps = 5/311 (1%) Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 D P+ K ++E+R L+K+KSTY D LP IN T RVHT Y A T TGRL+S +PNLQNI Sbjct: 8 DYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNI 67 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 P++ + G++IR+AF++P K+++ DYSQIELRI+AH++ L F + DIH AA Sbjct: 68 PVRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAA 127 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 EI GV I++VS + RR AK +NF +IYG+S F LA QL IPR EA +Y+ +YF R+PG+ Sbjct: 128 EIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVM 187 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 +Y+E T++ Q GYVETIFGRR+H EI S + R ERAAINAP+QG+AADI ++A Sbjct: 188 QYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKA 247 Query: 904 MISVHKSLE-DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 M+ V + +E + K+L+Q+HDELVFEV E ++ + ME A L VPL Sbjct: 248 MLLVDEWIEREGDGRVKLLMQVHDELVFEVKESSLSEIESKVQQLMESAA----ELAVPL 303 Query: 963 KVNIKVSNNWQ 973 +NW+ Sbjct: 304 VAEAGHGDNWE 314 >gi|313673235|ref|YP_004051346.1| DNA polymerase i [Calditerrivibrio nitroreducens DSM 19672] gi|312939991|gb|ADR19183.1| DNA polymerase I [Calditerrivibrio nitroreducens DSM 19672] Length = 791 Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 172/410 (41%), Positives = 256/410 (62%), Gaps = 8/410 (1%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L +Y +++ +I ++S+ME TGI ++ LK+ +I + L + ++ I ++ GE+ NL+ Sbjct: 382 LWELYNKVEHKIIHILSEMEQTGILLNSKQLKETDEKIKELLNNEKKAIDEMLGEEINLN 441 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ---INCGDNPIIKNILEWRQLSKIK 681 SPKQL +LF KLK K KTG + T L +N ++K+IL++R+ SK+ Sbjct: 442 SPKQLSFVLFEKLKMVPFKKNKTG-YSTDEDSLRNMIFLNPSYENLLKSILKYREFSKLI 500 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 STY L ++I++ T R+HT + T TGRL+S+ PNLQNIP K +LG +IR AF+S Sbjct: 501 STYTSKLSDYIDRSTGRIHTQFKQTGTATGRLSSVNPNLQNIPQKGELGSEIRSAFVSKE 560 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 +S DYSQIELRILAHI+ L FE DIH M A ++FG+ +++ +RR A Sbjct: 561 GYSFLSIDYSQIELRILAHISDDENLKIAFEQDFDIHTMTAMKVFGLLESEITRDIRRIA 620 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +NF IIYG+SP+ L+ + IP+SEA +IK+YF +P + +Y+++ +GYV T Sbjct: 621 KAVNFGIIYGLSPYGLSRDVGIPQSEAKIFIKKYFETYPNVKKYMKEIVKKAENDGYVTT 680 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 I R +I S ++I+ ER AIN+PIQGSAADI + AMI K L+ ++ K++ Sbjct: 681 ILNRPRFIPDIKSANNTIKQRAERIAINSPIQGSAADIIKLAMIKSDKYLKRMQIDGKLI 740 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 LQ+HDELVFE+ ++ I S+ I ME P L+VPLKVN+ +S N Sbjct: 741 LQVHDELVFEINDKYIDKTSKDIKVIMEN-IYP---LKVPLKVNLGISKN 786 Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 97/244 (39%), Positives = 143/244 (58%), Gaps = 13/244 (5%) Query: 9 LVDGSSFIYRAFYATPLL--SRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DG S Y+ FY TP L S+K +P + I F N L + + + + V+FD Sbjct: 4 IIDGHSLAYKIFYKTPPLYNSKK---VPTSMIHSFLNTLLSI----KDKLNPNRMIVVFD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E++ +YKANR K PE L+ Q+ ++ I +GFEADD+I T + Sbjct: 57 SKGDTFRHELFIEYKANRLKAPEDLIVQVEYLKKIIPLLDIELYAKEGFEADDLIYTLSK 116 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 I + + V I++ DKDL Q+V ++D +E +D + + +K+GI PE++V ALT Sbjct: 117 ITDDQ---VMIVTKDKDLAQIVDERVKIFDYQTDETVDRKKIHEKFGIYPEQIVDFLALT 173 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DN+PG+ GIG KTA LLL E+G L+NI N +IK RE + + E A LS+KL Sbjct: 174 GDSSDNVPGVKGIGEKTAVLLLNEFGTLDNIYSNLDKIKP-SYREKLEKGREIAYLSKKL 232 Query: 247 VMLR 250 V L+ Sbjct: 233 VTLK 236 >gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614] gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614] Length = 889 Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 173/514 (33%), Positives = 287/514 (55%), Gaps = 11/514 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K L L +G+ + G + D L +Y+ + S+D+A + ++L K+ Sbjct: 381 KVLHDAKGPMLALAAWGLPLAGLDRDTALSAYLARPDQRSYDLADLTVRYLKRELKQG-G 439 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + + +D + D E + ++ +L L L +L + ++ P++D++++ Sbjct: 440 ADDGQLSLDGLDDRNAGEIEMLHARAVLDLAAALDDELEERGGTRLLNDIELPLVDLLAK 499 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME TGI +D D L+ + + + + E + + G++ NL SPKQL +LF +L P Sbjct: 500 MEQTGIAVDTDHLEALESHFAAEVRDAAEQAFGVIGKEINLGSPKQLQAVLFDELGMPKT 559 Query: 643 AKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TKTG + T A L+ + ++P + ++L R +S+++ T L R+HT Sbjct: 560 KRTKTG-YTTDADALQALYVKTEHPFLLHLLRHRDVSRLRQTIEGLLKTVAGD--GRIHT 616 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 ++ TGRL+S EPNLQNIPI+T+ G++IR F+ P + L++ADYSQIE+RI+AH Sbjct: 617 TFNQTIAATGRLSSTEPNLQNIPIRTEEGRRIREGFVVGPGYESLMTADYSQIEMRIMAH 676 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ L + F++ D H + AA +F V + V+ +MR K +N+ + YG+S F L Q Sbjct: 677 LSEDDLLIEAFKSGRDFHSITAARVFDVPADDVTVEMRAKIKAMNYGLAYGLSAFGLGQQ 736 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I SEA + YF F GI +Y+ R+ G+ ETI+GRR + ++ S R Sbjct: 737 LGIEPSEARGLMDEYFQTFGGIRDYLGGVVEEARKAGFTETIWGRRRYLPDLTSDNRQRR 796 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 + ER A+NAPIQGSAAD+ + AM++V +++ LA++MLLQ+HDELVFEV E Sbjct: 797 EMAERMALNAPIQGSAADLIKIAMLNVDRAIAAAGLASRMLLQVHDELVFEVAPGEQEPL 856 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ M A +L VPL V++ +W E Sbjct: 857 EVLVREQMGAAA----DLAVPLDVSVGFGRSWHE 886 Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 149/294 (50%), Gaps = 17/294 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P+ + G NA+ GF +ML +L++ + +H V F Sbjct: 4 LLLLDGHSLAYRAFFALPVENFSTTTGQHTNAVYGFTSMLINVLRDEQP----THVGVAF 59 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY- 124 D TFR E Y DYKA R K P QLPL+ A IP ++ G+EADDIIAT Sbjct: 60 DVSRQTFRLEEYADYKAKRNKTPTEFSSQLPLIEEVLNALRIPFLKKDGYEADDIIATLV 119 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY------DTVKEEKIDIEHVIKKWGIPPE 177 T E V I++ D+D +QLV+ +T LY D + +E K+G+PP Sbjct: 120 TRALEDPEMEVLILTGDRDSLQLVTDRSTVLYPMRGVSDLARMTPAAVE---AKYGVPPA 176 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 + L A+ G++ DN+PG+PG+G AA + ++ L+N++ A I KK Sbjct: 177 RYPELAAIVGETSDNLPGVPGVGQGYAAKWINQFDGLDNVIARADEITGKKGEALRAHLG 236 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 + R +R L L D+ + E L ++ + + + LEF L +R+ T Sbjct: 237 DVIR-NRHLNALVCDLELDRTPEQLAVQPWDRHEVHTLFDGLEFRVLRDRLFET 289 >gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833] gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833] Length = 893 Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 189/534 (35%), Positives = 294/534 (55%), Gaps = 15/534 (2%) Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH 503 LT+E + L + +E K H++K L L +G+ +RG D + +Y+ G+ S Sbjct: 368 LTQEDEAALAAWLADETKPKAAHDVKGPLLALWEHGLDLRGLTCDTAIAAYLAMPGQRSF 427 Query: 504 DIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 I + ++L+ R E ++S+ D + ++ A++ + + +L L L Sbjct: 428 PIEELVLRYLNRELRYETPADGQASL-FDDVEAGMARDLALK-AQAVRELADALERHLAA 485 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 + ++ P+ V+++ME TGI D+ + AE S E + L GE+FN Sbjct: 486 RGGTRLMTEVELPLTRVLAEMEHTGIAADRQYFATLEAEFSAAAKQAVEAAHALVGEQFN 545 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIK 681 L SPKQL +ILF KL P K KTG + T A L + DN + +L R +K++ Sbjct: 546 LGSPKQLQEILFVKLGLPKTKKIKTG-YTTDADALAWLATQTDNELPAILLRHRDQTKLR 604 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SP 740 +T + L I R+HT ++ TGRL+S +PNLQNIPI+T G++IR+ FI Sbjct: 605 AT-VEGLIKEIAD-DGRIHTTFNQIVAATGRLSSEKPNLQNIPIRTAEGRRIRKGFIVGK 662 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 + L++ADYSQIELRI+AH++ + F + D H+ AA +FG+ ++V+P++R Sbjct: 663 GYETLLTADYSQIELRIMAHLSGDEAMIAAFGSGHDFHQATAARVFGLPPDQVTPELRAR 722 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 K +N+ + YG+S F LA QL IP +EA + YF F G+ EY+ + + R++GY E Sbjct: 723 IKAMNYGLAYGLSDFGLAGQLNIPVAEARALKEEYFEEFAGVREYLNRVVDQARKDGYTE 782 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 TI GRR + ++ S R + ER A+NAPIQGSAADI + AM+ V K++E + ++M Sbjct: 783 TILGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLKVRKAMEGMR--SRM 840 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LLQ+HDELVFEV E+ ++ M A LRVPL V+I W++ Sbjct: 841 LLQVHDELVFEVAPGELDDLIALVREHMGGA----YPLRVPLDVSIGTGPTWED 890 Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/263 (37%), Positives = 140/263 (53%), Gaps = 14/263 (5%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG S YRAFYA L++ DG A+ GF +ML +L++ R SH AV Sbjct: 13 LLLLDGHSLAYRAFYALRDANLMT--SDGQHTEAVYGFTSMLTNVLRDERP----SHIAV 66 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E Y YKANR + PE Q+ L+ IP + G+EADD+IAT Sbjct: 67 CFDRGGPTFRHEAYDAYKANRVEAPEDFHGQMELIYELLDVLRIPRLSAPGYEADDVIAT 126 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 A G V I++ D+D +QLV + T + + E V +K+G+ P + Sbjct: 127 LATRAAASGLDVLIVTGDRDALQLVDDKITVLMTRRGISDMTRFTPEAVEEKYGLRPAQY 186 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 AL GD DN+PGIPG+G KTAA ++E+G+L+ ++ +K K E + E+ Sbjct: 187 PDFAALRGDPSDNLPGIPGVGEKTAARWIKEFGSLDELVRRVDEVKGKT-GERLREHLAQ 245 Query: 240 ARLSRKLVMLRTDVPITIPLEHL 262 +R L LR DVPI + ++ L Sbjct: 246 VIHNRMLTELRRDVPIDVAVDDL 268 >gi|306818684|ref|ZP_07452406.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239] gi|307701025|ref|ZP_07638050.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16] gi|304648370|gb|EFM45673.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239] gi|307614020|gb|EFN93264.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16] Length = 1040 Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 188/568 (33%), Positives = 306/568 (53%), Gaps = 47/568 (8%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS 501 +TL E + L+ FF E+ + +N K + L YG + G +D+ L+ Y+ D S Sbjct: 479 STLRPESENVLRDFFAAENRTVVVYNAKALRHALRAYGWELSGTVQDVNLLDYLADPDAS 538 Query: 502 SHDIASIAQKWLSYTRKE----------------------------------ILKSRKSS 527 A++ ++ L ++ E K Sbjct: 539 RLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAVTASTGSKDISGG 598 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 IP+ + ++ V + S +L + +L ++ ++ + + ++ P+ ++ +ME TG Sbjct: 599 IPLPSLPETLVNQAKYALS--LLDMLPILTEQVKYRRVGSLLD-MELPLSRLLERMEDTG 655 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I +D+ LL++ E+S + E ++ G + NLSSPKQL D+LF +L P KTKT Sbjct: 656 IAVDEGLLQRFDQELSSEVKRTEAAAFEAIGREVNLSSPKQLQDVLFNQLGLPPTRKTKT 715 Query: 648 GQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 G + T A+ LE++ + +P ++ +L +R SK+ + L + I R+HT + Sbjct: 716 G-YTTDAKALEELALYNPHPFLQALLYFRDRSKLLQVVRN-LGDRIAS-DGRIHTTFGQT 772 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765 TGRL+SL+PNLQNIP +TD G +IR FI+ P L++ADYSQIE+RI+AH++ Sbjct: 773 VAATGRLSSLDPNLQNIPARTDDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDE 832 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F++ D+HR VAA +FGV E V+ R H K ++ + YG+S F LA QLRI + Sbjct: 833 GLIAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAFGLAGQLRISQ 892 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA ++ YF RF + +Y+E + R+ GY ET++GRR + + + + R Sbjct: 893 GEAKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMWGRRRYLPGLRATNRVVAENARR 952 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AA+NAPIQGSAAD+ ++AM+ V ++ L +++LLQIHDELVFEV E+ +++ Sbjct: 953 AALNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVVT 1012 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +M + LRVPL+V++ V NW+ Sbjct: 1013 EAMTSV----VELRVPLEVSVGVGANWR 1036 Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 151/283 (53%), Gaps = 10/283 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFY+ P + R G+ NA+ GF +ML +L+ + +H F Sbjct: 6 LLVLDGHSLAFRAFYSRPPENFRTTTGVYTNAVHGFMSMLLAMLRREKP----THIGAAF 61 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR +IYPDYK R + P L Q+ ++ A GI + ++ EADDI+AT Sbjct: 62 DLSRHSFRTDIYPDYKGGRAETPPEFLGQIENIQRLLDALGIKWLTMENVEADDILATLA 121 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 + +G V + S D+D QL+ TT LY + + ++ + V K+G+ P + Sbjct: 122 TQGKAQGMQVLVSSGDRDTFQLIDESTTVLYPGHNAAQTTRMTPQAVKDKYGVWPAQYPE 181 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 + AL G+ DN+PG+P +G K+AA + +YG LE IL + +K KR EN+ + + Sbjct: 182 VAALVGEKADNLPGVPLVGEKSAAAWINQYGGLEGILAHRGELK-GKRGENLRAHVDDVL 240 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 +R+L LRTD+ + + L+ L + + + LEF ++ Sbjct: 241 RNRELNRLRTDLHLPLQLDDLRWRGMDVSAVDAVCAELEFKEM 283 >gi|269977373|ref|ZP_06184346.1| DNA polymerase I [Mobiluncus mulieris 28-1] gi|269934676|gb|EEZ91237.1| DNA polymerase I [Mobiluncus mulieris 28-1] Length = 1040 Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 188/568 (33%), Positives = 305/568 (53%), Gaps = 47/568 (8%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS 501 +TL E + L+ FF E+ + +N K + L YG + G D+ L+ Y+ D S Sbjct: 479 STLRPESENVLRDFFAAENRTVVVYNAKALRHALRAYGWELSGTVRDVNLLDYLADPDAS 538 Query: 502 SHDIASIAQKWLSYTRKE----------------------------------ILKSRKSS 527 A++ ++ L ++ E K Sbjct: 539 RLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAVAASTGSKDISGG 598 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 IP+ + ++ V + S +L + +L ++ ++ + + ++ P+ ++ +ME TG Sbjct: 599 IPLPSLPETLVNQAKYALS--LLDMLPILTEQVEYRRVGSLLD-MELPLSRLLERMEDTG 655 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I +D+ LL++ E+S + E ++ G + NLSSPKQL D+LF +L P KTKT Sbjct: 656 IAVDEGLLQRFDQELSSEVKRTEAAAFEAIGREVNLSSPKQLQDVLFNQLGLPPTRKTKT 715 Query: 648 GQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 G + T A+ LE++ + +P ++ +L +R SK+ + L + I R+HT + Sbjct: 716 G-YTTDAKALEELALYNPHPFLQALLYFRDRSKLLQVVRN-LGDRIAS-DGRIHTTFGQT 772 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765 TGRL+SL+PNLQNIP +TD G +IR FI+ P L++ADYSQIE+RI+AH++ Sbjct: 773 VAATGRLSSLDPNLQNIPARTDDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDE 832 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F++ D+HR VAA +FGV E V+ R H K ++ + YG+S F LA QLRI + Sbjct: 833 GLIAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAFGLAGQLRISQ 892 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA ++ YF RF + +Y+E + R+ GY ET++GRR + + + + R Sbjct: 893 GEAKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMWGRRRYLPGLRATNRVVAENARR 952 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AA+NAPIQGSAAD+ ++AM+ V ++ L +++LLQIHDELVFEV E+ +++ Sbjct: 953 AALNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVVT 1012 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +M + LRVPL+V++ V NW+ Sbjct: 1013 EAMTSV----VELRVPLEVSVGVGANWR 1036 Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 151/283 (53%), Gaps = 10/283 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFY+ P + R G+ NA+ GF +ML +L+ + +H F Sbjct: 6 LLVLDGHSLAFRAFYSRPPENFRTTTGVYTNAVHGFMSMLLAMLRREKP----THIGAAF 61 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR +IYPDYK R + P L Q+ ++ A GI + ++ EADDI+AT Sbjct: 62 DLSRHSFRTDIYPDYKGGRAETPPEFLGQIENIQRLLDALGIKWLTMENVEADDILATLA 121 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 + +G V + S D+D QL+ TT LY + + ++ + V K+G+ P + Sbjct: 122 TQGKAQGMQVLVSSGDRDTFQLIDESTTVLYPGHNAAQTTRMTPQAVKDKYGVWPAQYPE 181 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 + AL G+ DN+PG+P +G K+AA + +YG LE IL + +K KR EN+ + + Sbjct: 182 VAALVGEKADNLPGVPLVGEKSAAAWINQYGGLEGILAHRGELK-GKRGENLRAHVDDVL 240 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 +R+L LRTD+ + + L+ L + + + LEF ++ Sbjct: 241 RNRELNRLRTDLHLPLQLDDLRWRGMDVSAVDAVCAELEFKEM 283 >gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4] gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4] Length = 1015 Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 164/486 (33%), Positives = 268/486 (55%), Gaps = 26/486 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L +Y+LD + +A +W + + + +N Sbjct: 551 DLGLAAYLLDPEERDYGWPRLAARW-----------------------GDMLDRSTDNPG 587 Query: 548 VI-LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 ++ L++ + +L L + L+ P++ V++ ME GI +D+ E+ L Sbjct: 588 LLALEMAQGMAGRLAGASLDTLMRTLELPLVPVLADMEEAGIAVDRTAFAAFLDEVQHEL 647 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666 + + +Y +G +FN+ S +QLG++LF L P+ KT+ GQ T+ LE+++ G +P Sbjct: 648 DRITQEVYKAAGGQFNIRSAQQLGELLFGTLGLPTVGKTRGGQATTSQDALEKLS-GRHP 706 Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 ++ IL++R+L K++STY + LP ++ R+H+ ++ +T TGRL+S PNLQNIP + Sbjct: 707 VVDLILDFRKLEKLRSTYLEPLPKLVDD-AGRIHSTFNQLATATGRLSSSNPNLQNIPAR 765 Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 DLG+++R F + L+SADYSQIELR+LAH+++ L F DIHR A ++ Sbjct: 766 GDLGRRMRSCFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLY 825 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 E V+P RR+AKTINF +IYG+ P +L +LRI +EA +I+RYF R + + Sbjct: 826 DTAPEDVTPDQRRNAKTINFGLIYGMGPQKLGQELRITVNEAKQFIERYFSRLQHLRNFY 885 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 + + R+ G+V T+ GRR E++S + +R+ R AIN IQGSAADI + AM++ Sbjct: 886 DNVEAAAREQGHVTTLAGRRRLLPEMHSENTQLRSQARRQAINTLIQGSAADIIKLAMLA 945 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 H H L +++LQ+HDEL+ EVPE A + + M + + L VPL V+ Sbjct: 946 AHDDPVLHGLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVRPGGVTLDVPLLVDW 1005 Query: 967 KVSNNW 972 +W Sbjct: 1006 GAGKDW 1011 Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 151/290 (52%), Gaps = 19/290 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+DGS+FI+R FYA + R DG P NA+ +L +LL +E HFA + D Sbjct: 14 LWLMDGSAFIFRGFYAFQNMQRS-DGFPTNALFIVTRILLRLL----REEKPRHFAFVLD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT- 125 TFR++++P YKA R PE L+ QL +R A G+P G EADD IA+ Sbjct: 69 GKGPTFRHDLFPLYKAQRAATPEPLVQQLEPIRRMVTALGLPLEVSDGCEADDCIASLAA 128 Query: 126 -YIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKI-DIEHVIKKWGIPPEKMVCL 182 Y E+ V II DKDL Q + P L+D KEEK+ + + G+ P + + Sbjct: 129 RYRDERP---VVIIGADKDLKQCLHPNVVLWDPGAKEEKLTTLASFTAETGLTPAQWPDV 185 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYAET 239 QA+ GD+ DNIPGIPG+G KTA+ + ++ LE+I R+ QKK +++ + Sbjct: 186 QAVIGDTSDNIPGIPGVGPKTASKIFADFPTLEDIRDGFDRLPPNLQKKFEQHL----DA 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 L R+L L D + E L ++ + +FL+ E L +A Sbjct: 242 MFLYRQLTTLAIDRCADLTPERLSVQPLDARTASTFLQEFELRALSRELA 291 >gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1] gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1] Length = 908 Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 179/536 (33%), Positives = 300/536 (55%), Gaps = 34/536 (6%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 L + + H K H K L G ++ G D L +Y++ G+ S + ++ Sbjct: 386 LASWLADPHVPKALHEAKLAIHDLQGRGWTLAGVTSDTALAAYLVRPGQRSFALDDLS-- 443 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQ-VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570 L Y ++E+ + + DS V + A++ LLLR +V+ + E Sbjct: 444 -LRYLKRELRADNPEQQQLSLLDDSDGVDDQAVQT--------LLLRASAVVDLADALDE 494 Query: 571 RLDK------------PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 L + P+ V++++E GI +D ++L + +E + + E Y + G Sbjct: 495 ELSRIDSSALLGNMELPVQRVLAELETAGIAVDLEMLSGLQSEFADQIRDAAEAAYAVIG 554 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQL 677 ++ NL SPKQL +LF +L+ P +TKTG + T A L+ + + +P ++++L R Sbjct: 555 KQINLGSPKQLQVVLFDELEMPKTKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDA 613 Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 +++K T D L N + R+HT ++ TGRL+S EPNLQNIPI+T+ G++IR AF Sbjct: 614 TRLKVT-VDGLLNAVAS-DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAF 671 Query: 738 I-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 + +L++ADYSQIE+RI+AH+++ L + F D+H VA+ F V I++V+ + Sbjct: 672 VVGDGYGELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAE 731 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 +RR K +++ + YG+S + L+ QL+I EA + +++YF RF G+ +Y+ + R++ Sbjct: 732 LRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMEQYFARFGGVRDYLRDVVDQARKD 791 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GY T+FGRR + E++S +R ERAA+NAPIQGSAADI + AMI+V ++++D L Sbjct: 792 GYTSTVFGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQAIKDAGL 851 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ LLQ+HDEL+FEV + E T ++ M A L VPL+V++ +W Sbjct: 852 KSRTLLQVHDELLFEVADGERDTLDALVREHMGSAY----ALDVPLEVSVGFGRSW 903 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 107/290 (36%), Positives = 155/290 (53%), Gaps = 10/290 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG+S +RAFYA P + K GL NA+ GF ML L+++ + SH A F Sbjct: 22 LMLLDGNSLAFRAFYALPAENFKTQGGLTTNAVYGFTAMLINLIRDEQP----SHIAAAF 77 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E YP+YK R P+ Q+ + + A GI + GFEADDIIAT Sbjct: 78 DVSRQTFRKEKYPEYKEGRSATPDEFRGQIDITKEVLGALGITVLAEAGFEADDIIATLA 137 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EG V +++ D+D +QLVS T LY V E + E V +K+G+ P + Sbjct: 138 TQAEGEGHRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVQEKYGLTPAQYPD 197 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTA + EYG+L+ ++ N ++K K + + + + Sbjct: 198 FAALRGDPSDNLPGIPGVGEKTATKWIAEYGSLQGLVDNVDKVKGKV-GDALRAHLSSVV 256 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 L+R+L L DVP+ + L ++ + + LEF L +R+ T Sbjct: 257 LNRELTELVKDVPLAQTPDTLRMQPWDRDHIHRLFDDLEFRVLRDRLFDT 306 >gi|227875370|ref|ZP_03993512.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|227844275|gb|EEJ54442.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] Length = 1040 Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 188/568 (33%), Positives = 306/568 (53%), Gaps = 47/568 (8%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS 501 +TL E + L+ FF E+ + +N K + L YG + G +D+ L+ Y+ D S Sbjct: 479 STLRPESENVLRDFFAAENRTVVVYNAKALRHALRAYGWELSGTVQDVNLLDYLADPDAS 538 Query: 502 SHDIASIAQKWLSYTRKE----------------------------------ILKSRKSS 527 A++ ++ L ++ E K Sbjct: 539 RLKFAAVTERLLGWSIDEKPSDIGKISEQMAFDLGWGNVTDAAGAAAVTASTGSKDISGG 598 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 IP+ + ++ V + S +L + +L ++ ++ + + ++ P+ ++ +ME TG Sbjct: 599 IPLPSLPETLVNQAKYALS--LLDMLPILTEQVKYRRVGSLLD-MELPLSRLLERMEDTG 655 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I +D+ LL++ E+S + E ++ G + NLSSPKQL D+LF +L P KTKT Sbjct: 656 IAVDEGLLQRFDQELSSEVKRTETAAFEAIGREVNLSSPKQLQDVLFNQLGLPPTRKTKT 715 Query: 648 GQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 G + T A+ LE++ + +P ++ +L +R SK+ + L + I R+HT + Sbjct: 716 G-YTTDAKALEELALYNPHPFLQALLYFRDRSKLLQIVRN-LGDRIAP-DGRIHTTFGQT 772 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKIT 765 TGRL+SL+PNLQNIP +TD G +IR FI+ P L++ADYSQIE+RI+AH++ Sbjct: 773 VAATGRLSSLDPNLQNIPARTDDGARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDE 832 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L F++ D+HR VAA +FGV E V+ R H K ++ + YG+S F LA QLRI + Sbjct: 833 GLIAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAFGLAGQLRISQ 892 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EA ++ YF RF + +Y+E + R+ GY ET++GRR + + + + R Sbjct: 893 GEAKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMWGRRRYLPGLRATNRVVAENARR 952 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AA+NAPIQGSAAD+ ++AM+ V ++ L +++LLQIHDELVFEV E+ +++ Sbjct: 953 AALNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVVT 1012 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +M + LRVPL+V++ V NW+ Sbjct: 1013 EAMTSV----VELRVPLEVSVGVGANWR 1036 Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 92/283 (32%), Positives = 151/283 (53%), Gaps = 10/283 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFY+ P + R G+ NA+ GF +ML +L+ + +H F Sbjct: 6 LLVLDGHSLAFRAFYSRPPENFRTTTGVYTNAVHGFMSMLLAMLRREKP----THIGAAF 61 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR +IYPDYK R + P L Q+ ++ A GI + ++ EADDI+AT Sbjct: 62 DLSRHSFRTDIYPDYKGGRAETPPEFLGQIENIQRLLDALGIKWLTMENVEADDILATLA 121 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 + +G V + S D+D QL+ TT LY + + ++ + V K+G+ P + Sbjct: 122 TQGKAQGMQVLVSSGDRDTFQLIDESTTVLYPGHNAAQTTRMTPQAVKDKYGVWPAQYPE 181 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 + AL G+ DN+PG+P +G K+AA + +YG LE IL + +K KR EN+ + + Sbjct: 182 VAALVGEKADNLPGVPLVGEKSAAAWINQYGGLEGILAHRGELK-GKRGENLRAHVDDVL 240 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 +R+L LRTD+ + + L+ L + + + LEF ++ Sbjct: 241 RNRELNRLRTDLHLPLQLDDLRWRGMDVSAVDAVCAELEFKEM 283 >gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] Length = 909 Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 176/519 (33%), Positives = 296/519 (57%), Gaps = 37/519 (7%) Query: 473 KLVLHRY---GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSI 528 KL +H G ++ G D L +Y++ G+ S + ++ L Y ++E+ Sbjct: 404 KLAMHDLQGRGWTLAGVTSDTALAAYLVRPGQRSFALDDLS---LRYLKRELRADNPEQQ 460 Query: 529 PIDKISDSQ-VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK------------P 575 + + DS V + A++ LLLR +V+ + E L + P Sbjct: 461 QLSLLDDSDAVDDQAVQT--------LLLRAGAVVDLADALDEELARIDSSALLGSMELP 512 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + V++Q+E GI +D +L ++ +E + + E Y + G++ NL SPKQL +LF Sbjct: 513 VQRVLAQLETVGIAVDLAMLSELQSEFAGQIRDAAEAAYAVIGKQINLGSPKQLQVVLFD 572 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 +L+ P +TKTG + T A L+ + + +P ++++L R +++K T D L N + Sbjct: 573 ELEMPKTKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAA 630 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753 R+HT ++ TGRL+S EPNLQNIPI+T+ G++IR F+ L++ADYSQI Sbjct: 631 -DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDGFVVGEGYADLMTADYSQI 689 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 E+RI+AH++K L + F D+H VA+ F V +++V+P++RR K +++ + YG+S Sbjct: 690 EMRIMAHLSKDAGLIEAFNTGEDLHSFVASRAFSVPLDEVTPELRRRVKAMSYGLAYGLS 749 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 + L+ QL+I EA + +++YF RF G+ +Y+ + R++GY T+FGRR + E++ Sbjct: 750 AYGLSQQLKISTEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVFGRRRYLPELD 809 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S +R ERAA+NAPIQGSAADI + AMI+V +++++ L+++MLLQ+HDEL+FEV Sbjct: 810 SSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQAIKEAGLSSRMLLQVHDELLFEVA 869 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + E ++ M A L VPL+V++ +W Sbjct: 870 DGERDALDALVREHMGSAY----RLDVPLEVSVGYGRSW 904 Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/290 (36%), Positives = 157/290 (54%), Gaps = 10/290 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG+S +RAFYA P + K GL NA+ GF ML LL++ + +H A F Sbjct: 23 LMLLDGNSLAFRAFYALPAENFKTKSGLTTNAVYGFTAMLINLLRDEQP----THIAAAF 78 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR + YP+YK R P+ Q+ + + A GI + GFEADDIIAT Sbjct: 79 DVSRQTFRKDKYPEYKEGRSATPDEFRGQIDITKEVLGALGITVLAEPGFEADDIIATLA 138 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EG V +++ D+D +QLVS T LY V E + E V +K+G+ P + Sbjct: 139 TQAENEGHRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVQEKYGLTPAQYPD 198 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTA + EYG+L++++ N ++K K + + + + Sbjct: 199 FAALRGDPSDNLPGIPGVGEKTATKWIAEYGSLQSLVDNVDKVKGKV-GDALRAHLSSVV 257 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 L+R+L L DVP+ + L ++ + ++ LEF L +R+ T Sbjct: 258 LNRELTDLVKDVPLAHTPDTLRMQPWDRDQIHRLFDDLEFRVLRDRLFDT 307 >gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough] gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough] gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1] Length = 1015 Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 164/486 (33%), Positives = 268/486 (55%), Gaps = 26/486 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L +Y+LD + +A +W + + + +N Sbjct: 551 DLGLAAYLLDPEERDYGWPRLAARW-----------------------GDMLDRSTDNPG 587 Query: 548 VI-LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 ++ L++ + +L L + L+ P++ V++ ME GI +D+ E+ L Sbjct: 588 LLALEMAQGMAGRLAGASLDTLMRTLELPLVPVLADMEEAGIAVDRTAFAAFLDEVQHEL 647 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666 + + +Y +G +FN+ S +QLG++LF L P+ KT+ GQ T+ LE+++ G +P Sbjct: 648 DRITQEVYKAAGGQFNIRSAQQLGELLFGTLGLPTVGKTRGGQATTSQDALEKLS-GRHP 706 Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 ++ IL++R+L K++STY + LP ++ R+H+ ++ +T TGRL+S PNLQNIP + Sbjct: 707 VVDLILDFRKLEKLRSTYLEPLPKLVDA-AGRIHSTFNQLATATGRLSSSNPNLQNIPAR 765 Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 DLG+++R F + L+SADYSQIELR+LAH+++ L F DIHR A ++ Sbjct: 766 GDLGRRMRSCFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLY 825 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 E V+P RR+AKTINF +IYG+ P +L +LRI +EA +I+RYF R + + Sbjct: 826 DTAPEDVTPDQRRNAKTINFGLIYGMGPQKLGQELRITVNEAKQFIERYFSRLQHLRNFY 885 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 + + R+ G+V T+ GRR E++S + +R+ R AIN IQGSAADI + AM++ Sbjct: 886 DNVEAAAREQGHVTTLAGRRRLLPEMHSENTQLRSQARRQAINTLIQGSAADIIKLAMLA 945 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 H H L +++LQ+HDEL+ EVPE A + + M + + L VPL V+ Sbjct: 946 AHDDPVLHGLKARLILQVHDELMLEVPEANAQAAGERLALLMSEVRPGGVTLDVPLLVDW 1005 Query: 967 KVSNNW 972 +W Sbjct: 1006 GAGKDW 1011 Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 103/290 (35%), Positives = 151/290 (52%), Gaps = 19/290 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+DGS+FI+R FYA + R DG P NA+ +L +LL +E HFA + D Sbjct: 14 LWLMDGSAFIFRGFYAFQNMQRS-DGFPTNALFIVTRILLRLL----REEKPRHFAFVLD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT- 125 TFR++++P YKA R PE L+ QL +R A G+P G EADD IA+ Sbjct: 69 GKGPTFRHDLFPLYKAQRAATPEPLVQQLEPIRRMVTALGLPLEVSDGCEADDCIASLAA 128 Query: 126 -YIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKI-DIEHVIKKWGIPPEKMVCL 182 Y E+ V II DKDL Q + P L+D KEEK+ + + G+ P + + Sbjct: 129 RYRDERP---VVIIGADKDLKQCLHPNVVLWDPGAKEEKLTTLASFTAETGLTPAQWPDV 185 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRRENILEYAET 239 QA+ GD+ DNIPGIPG+G KTA+ + ++ LE+I R+ QKK +++ + Sbjct: 186 QAVIGDTSDNIPGIPGVGPKTASKIFADFPTLEDIRDGFDRLPPNLQKKFEQHL----DA 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 L R+L L D + E L ++ + +FL+ E L +A Sbjct: 242 MFLYRQLTTLAIDRCADLTPERLSVQPLDARTASTFLQEFELRALSRELA 291 >gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii DSM 11347] Length = 838 Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 186/513 (36%), Positives = 304/513 (59%), Gaps = 36/513 (7%) Query: 463 LKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521 LKI +N K L G+ + + D+M+++Y+++ R ++I + L YT K Sbjct: 355 LKIIYNAKEALKKLKNSGLKLSPPYFDLMIVAYLINPNRGKYNIDELI---LEYTGK--- 408 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNV-ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 E+A EN N + +L+ L +L ++L ++Y ++ P+I+V+ Sbjct: 409 ----------------FYENA-ENINFYMFELYEKLNKELKEKELENLYFDIEMPLIEVL 451 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ME TGI+++ + L+ ++ IS L ++E IY ++G +FN++SPKQL ++L+ +L Sbjct: 452 FDMEETGIKVNIEKLETLTKHISMELDKIKEKIYTIAGTEFNINSPKQLAEVLYDRL--- 508 Query: 641 SGAKTKTGQWKTTAQDLEQIN--CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 G KT+ K + ++E + + + ++ +R L+K+ + Y L ++IN T+R Sbjct: 509 -GLKTRKRGKKARSTEMEVLEELAIQHELPHEVINYRTLNKLLTGYLIPLRDYINPETKR 567 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRIL 758 +HT +S TGR+ S EPNLQNIP+K + + +R FI +SADYSQIELR+L Sbjct: 568 IHTKWSQTVAGTGRIVSSEPNLQNIPVKGEWAEFLREVFIPENGYMFLSADYSQIELRLL 627 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH+++ L + F + DIH A+EIF + V+ + RR AKT+NF I YGISPF L+ Sbjct: 628 AHMSEDPALIKAFLDGKDIHTATASEIFSIPENAVTDEHRRIAKTVNFGISYGISPFGLS 687 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 ++IP +A + I+ YF R+P + ++IE+T +F ++NGYV T+FGR EINSP Sbjct: 688 ESIKIPYEKAEELIELYFLRYPMVRKFIEETISFAQKNGYVRTLFGRIRPLPEINSPNQF 747 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 +R +ER A+NA +QG+AADI + AMI ++ L+ KL K++LQIHDE+V EV ++ I Sbjct: 748 LRMQSERMAVNARVQGTAADIIKIAMIRIYNRLKKEKLNAKIILQIHDEIVLEVEQKVIE 807 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 S+I+ + M+ +L VPL+VN+ N+ Sbjct: 808 KVSEIVQNEMK-----DFSLSVPLEVNVFSGNS 835 Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 127/291 (43%), Positives = 180/291 (61%), Gaps = 10/291 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + ++LVDGS FIYRA++A LS G+P NAI GF ML KLL +E + Sbjct: 2 HEIYLVDGSCFIYRAYHAIKGLSTSR-GIPTNAIYGFTRMLLKLL----REKNVKYILCA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD P T R++IY +YK RP+ P+ L Q+ ++ A GI IE+ G+EADDIIAT Sbjct: 57 FDSPHPTKRHKIYEEYKITRPETPKDLPVQIDYIKQIIDALGITRIEVPGYEADDIIATA 116 Query: 125 TYIAEKEGFA---VTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 + + FA IIS DKD++QLVS +YD + E ID E+VIKK+G+PPEK+ Sbjct: 117 VGVINQ--FAPLNFIIISIDKDMLQLVSDNVKIYDPINELIIDREYVIKKYGVPPEKLND 174 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD+IDNIPG+ GIG KTAA L++ YG++ENIL N IK K + I + ++ + Sbjct: 175 FMALVGDAIDNIPGVKGIGEKTAANLIKRYGSIENILKNLDIIKPLKVSDIIKKNIKSLQ 234 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 LS++LV+LR D PI I L+ L ++ + +L+ + LEF L+ ++ + Sbjct: 235 LSKELVILRKDTPIEIKLDDLKIKQQDREKLVQIFRELEFNTLLKQIIKDF 285 >gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] Length = 908 Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 179/536 (33%), Positives = 300/536 (55%), Gaps = 34/536 (6%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 L + + H K H K L G ++ G D L +Y++ G+ S + ++ Sbjct: 386 LASWLADPHVPKALHEAKLAIHDLQGRGWTLAGVTSDTALAAYLVRPGQRSFALDDLS-- 443 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQ-VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570 L Y ++E+ + + DS V + A++ LLLR +V+ + E Sbjct: 444 -LRYLKRELRADNPEQQQLSLLDDSDGVDDQAVQT--------LLLRASAVVDLADALDE 494 Query: 571 RLDK------------PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 L + P+ V++++E GI +D ++L + +E + + E Y + G Sbjct: 495 ELARIDSSALLGNMELPVQRVLAELETAGIAVDLEMLSGLQSEFADQIRDAAEAAYAVIG 554 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQL 677 ++ NL SPKQL +LF +L+ P +TKTG + T A L+ + + +P ++++L R Sbjct: 555 KQINLGSPKQLQVVLFDELEMPKTKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDA 613 Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 +++K T D L N + R+HT ++ TGRL+S EPNLQNIPI+T+ G++IR AF Sbjct: 614 TRLKVT-VDGLLNAVAS-DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAF 671 Query: 738 I-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 + +L++ADYSQIE+RI+AH+++ L + F D+H VA+ F V I++V+ + Sbjct: 672 VVGDGYGELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAE 731 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 +RR K +++ + YG+S + L+ QL+I EA + +++YF RF G+ +Y+ + R++ Sbjct: 732 LRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMEQYFARFGGVRDYLRDVVDQARKD 791 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GY T+FGRR + E++S +R ERAA+NAPIQGSAADI + AMI+V ++++D L Sbjct: 792 GYTSTVFGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQAIKDAGL 851 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ LLQ+HDEL+FEV + E T ++ M A L VPL+V++ +W Sbjct: 852 KSRTLLQVHDELLFEVADGERDTLDALVREHMGSAY----ALDVPLEVSVGFGRSW 903 Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 107/290 (36%), Positives = 155/290 (53%), Gaps = 10/290 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG+S +RAFYA P + K GL NA+ GF ML L+++ + SH A F Sbjct: 22 LMLLDGNSLAFRAFYALPAENFKTQGGLTTNAVYGFTAMLINLIRDEQP----SHIAAAF 77 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E YP+YK R P+ Q+ + + A GI + GFEADDIIAT Sbjct: 78 DVSRQTFRKEKYPEYKEGRSATPDEFRGQIDITKEVLGALGITVLAEAGFEADDIIATLA 137 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EG V +++ D+D +QLVS T LY V E + E V +K+G+ P + Sbjct: 138 TQAEGEGHRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVQEKYGLTPAQYPD 197 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTA + EYG+L+ ++ N ++K K + + + + Sbjct: 198 FAALRGDPSDNLPGIPGVGEKTATKWIAEYGSLQGLVDNVDKVKGKV-GDALRAHLSSVV 256 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 L+R+L L DVP+ + L ++ + + LEF L +R+ T Sbjct: 257 LNRELTELVKDVPLAQTPDTLRMQPWDRDHIHRLFDDLEFRVLRDRLFDT 306 >gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 856 Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 173/418 (41%), Positives = 256/418 (61%), Gaps = 13/418 (3%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 E L + R+D P+ V+S+ME GI++D D L +V E+ + L ++ +I +G K N Sbjct: 445 EALHGLMYRIDIPLSVVLSRMERKGIRLDLDHLWKVKQELERTLDDVKASIDMAAGYKVN 504 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQLSK 679 L+SPKQ+G +LF L P KTKTG + T LE+++ D P + K +L+ R+L+K Sbjct: 505 LNSPKQVGWLLFDHLGLPVIKKTKTG-YSTDVTVLEELSRLDRPEALVAKLLLDHRELTK 563 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 + + + L + I+ +T +VHT + ST TGRL+S +PNLQN+P D K++ AF+ Sbjct: 564 MLTGFVQPLIDAIDPKTGKVHTTFEHTSTGTGRLSSRDPNLQNLPAYGDWAMKLKEAFV- 622 Query: 740 PPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 P ++ I+ADYSQIELR+LAHI+ L + FE DIH AA IFGV+ EKVSP+ Sbjct: 623 -PDRRDGIFIAADYSQIELRVLAHISGDKKLCEAFERGRDIHAETAAWIFGVDTEKVSPE 681 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 +RR AK INF ++YG++P+ LA++L I R EA I RYF FP + +YIEK+ R+ Sbjct: 682 LRRMAKMINFGLLYGMTPYGLASRLNIGREEAKTIIDRYFSAFPKVGDYIEKSYEEARKR 741 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKL 916 GY ++FGRR +E+ + + +R AIN PIQ +AADIT+ AMI + ++L+ + Sbjct: 742 GYTLSLFGRRRPLNEVTTVVGNSTAALKRVAINTPIQSTAADITKIAMIRLDEALQRENI 801 Query: 917 ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++LQIHD L+ E ++ S I+ SME A + L VPL+VN+K E Sbjct: 802 DAALILQIHDSLICECSAKDEEVVSGILKESMESA----VELSVPLEVNLKSGRTLAE 855 Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 111/327 (33%), Positives = 172/327 (52%), Gaps = 35/327 (10%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 KE + LVDG + +RAFYA P L+ DG+P NAI GF NML K++ + + + Sbjct: 2 KEERILLVDGHALAFRAFYALPELN-APDGMPTNAILGFLNMLLKIINDENPDQVI---- 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR+E Y +YK RP PE QL L++ + G P IEI+G EADD IA Sbjct: 57 VFFDAKGETFRHEAYKEYKEGRPPTPEEFKSQLLLIKEIMKYLGYPVIEIEGVEADDAIA 116 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178 + I E +G A+ +++ DKD++QL+ + +K + D + +++G PP Sbjct: 117 SVVRILEGKGSAL-VLTADKDMLQLIRADVKVMRPIKGVSTFKVYDEKTFEEEFGFPPSS 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRREN 232 +L GD +DNIPGIPGIG K A+ L+Q+YG+LEN+ + + + Q K +++ Sbjct: 176 FPDYLSLIGDKVDNIPGIPGIGSKRASALIQQYGSLENLYEHINELPQKIASSLKDKKDE 235 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 + ++ R+L+ LR + I+ P E + N LI + L F ++ R+ Sbjct: 236 LFQW-------RELIRLRDTLCIS-PDEFKGGGERNNEALIGIFQRLGFKQIPERLGLR- 286 Query: 293 DCDAANIEPVVLDINTTENKGIAIETE 319 V D+++ E + A E E Sbjct: 287 ----------VKDVDSRETRSKAGEGE 303 >gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58] gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58] Length = 937 Score = 303 bits (777), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 156/427 (36%), Positives = 255/427 (59%), Gaps = 17/427 (3%) Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY--- 614 P+++ + + L+ P+ ++++ME+TGI +D D L + + + + +E+ + Sbjct: 515 PQVLDRGAQRLLQELEIPLSRLLARMELTGIAVDVDALTGLREDFTAAADAAKESAWASV 574 Query: 615 --DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNI 671 + G + NL SPKQL ++LF +L P KTKTG + T L+ + +P ++N+ Sbjct: 575 AEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTG-YSTDVDSLQDLLEQTQHPFLENL 633 Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731 + R +K++ T L R+HT YS + TGRL+SL PNLQNIP++T+ G+ Sbjct: 634 MAHRDATKLRQTVEGLL--ETVAPDGRIHTTYSQTAAATGRLSSLHPNLQNIPVRTEAGR 691 Query: 732 KIRRAFISPPTKK----LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 +IR F++ L+SADYSQIE+RI+AH+++ L Q F D+H V +++FG Sbjct: 692 RIRGVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFG 751 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 V+ ++V+ + R K +++ + YG+S F L+ QL+I EA +K YF RF G+ +Y+ Sbjct: 752 VDPDEVTAEQRAKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYFDRFGGVRDYLR 811 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 RQ+GY TI GRR + +++S +R++ ERAA+NAPIQGSAADI +RAM+ V Sbjct: 812 DVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERAALNAPIQGSAADIIKRAMLDV 871 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 LE+H LA+++LLQ+HDEL+ EVP E+ ++ ++ M +A L VPL V++ Sbjct: 872 QAGLEEHGLASRLLLQVHDELILEVPAAELEQSTALLKERMGRAA----ELSVPLDVHVG 927 Query: 968 VSNNWQE 974 +W + Sbjct: 928 QGRSWHD 934 Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 107/287 (37%), Positives = 159/287 (55%), Gaps = 10/287 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P + D G NA+ GF ML +++ R +H AV F Sbjct: 13 LLVLDGHSMAFRAFYALPAENFATDTGQHTNAVYGFTAMLLTMIRQQRP----THVAVAF 68 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+E Y +YKA R + P Q+ L +A GIP + +G+EADDI+AT + Sbjct: 69 DLSGPTFRSEEYGEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTFEGYEADDIVATLS 128 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKI---DIEHVIKKWGIPPEKMVC 181 AE+ G+ ++S D+D QL+S TT LY I D + V+ K+G+ P + Sbjct: 129 ARAEEAGWEAVVVSGDRDAFQLISERTTVLYPKKGVSDIPPMDADAVLAKYGVAPAQYPE 188 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G++ DN+PG+PG+G AA L++YG+L+ +L +A I KK E + E+ E R Sbjct: 189 LAALVGEAADNLPGVPGVGPGFAAKWLKQYGDLDGVLAHAHEITGKK-GEALREHLEDVR 247 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +R+L L D+ + I LE + LE + AL+F ++ RV Sbjct: 248 RNRRLNALVRDLDLPIGLEAMRLEMPEREPVEELFDALQFNRIRERV 294 >gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46] gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46] Length = 881 Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 189/575 (32%), Positives = 317/575 (55%), Gaps = 48/575 (8%) Query: 409 IAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN 468 + I + D+K TS + + +DL +++D+ L+++ +H K+ H+ Sbjct: 339 LMIGSADEKGKTSG--QAVSLDLGELSAEDADA-----------LREWLAGDH-PKLVHD 384 Query: 469 IKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527 K VL Y + G D L +Y+L + S+ + ++ Q+ L T + Sbjct: 385 SKSAMHVLWNYDFELVGVIHDTFLAAYLLRPSQRSYSLDNVVQRHLGQTLSQ-------- 436 Query: 528 IPIDKISDSQVQ--EHAIENSN---VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 +D Q+ + E+++ ++ L L +L L VY L+ P+ V+ + Sbjct: 437 ------ADGQMTLLDGPAEDASHVAAVIDLAERLAVELDEAGLYSVYADLEVPLAPVLGR 490 Query: 583 MEITGIQIDQDLLKQVSAEI---SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 ME GI +D D L+++ + + + S N+ D + NL SPKQL ++LF +L Sbjct: 491 MERAGIAVDVDALEELRKQAQAATDDAESAARNLVDKP--ELNLGSPKQLQEVLFDQLGM 548 Query: 640 PSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P KTKTG + T A+++E + +P + +L++R+ K+KST + L + R Sbjct: 549 PKTKKTKTG-YSTAAKEIEGLAKVNPHPFLDYLLKFRESQKMKST-VEGLIKAVAD-DGR 605 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRI 757 +HT ++ TGRL+S EPNLQNIP++T+ G++IR AF+ +LI+ADYSQIE+R+ Sbjct: 606 IHTTFNQTVAATGRLSSTEPNLQNIPVRTEFGRRIREAFVVGEGYAQLITADYSQIEMRV 665 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 +AH+++ L + + D+H V +++FGV I++V+P++RR K +++ + YG+S F L Sbjct: 666 MAHLSQDPGLIEAYRQGEDLHNYVGSKVFGVGIDEVTPELRRRVKAMSYGLAYGLSAFGL 725 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 A QL IP+ EA ++ YF RF G+ +Y+ K R++G+ T+F RR + E+N+ Sbjct: 726 AQQLDIPQREAKKLMEDYFERFGGVRDYLHKVVEQARKDGFTATMFDRRRYLPELNADNR 785 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 R+ ERAA+N+PIQGSAADI + AM+ V +L L +++LLQ+HDELV EV + E Sbjct: 786 IARDNAERAALNSPIQGSAADIIKIAMLRVDDALRRGGLRSRVLLQVHDELVVEVADGEE 845 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +++ M+ A L VPL V+I NW Sbjct: 846 AAIKELLHREMDSAA----ELLVPLDVSIGAGVNW 876 Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 107/299 (35%), Positives = 156/299 (52%), Gaps = 11/299 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAF+A P+ + G NA+ GF +ML +L E +H AV F Sbjct: 5 LMLIDGHSMAFRAFFALPVDNFSTTGGQTTNAVYGFLSMLSNIL----SEEKPTHVAVAF 60 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNEI+P+YKA R K PE Q+PL++ + GI +E +EADDIIAT Sbjct: 61 DVARETFRNEIFPEYKAQREKTPEEFRGQVPLIQQVLKEMGIVTLEKDNYEADDIIATLA 120 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 A+ EGF I++ D+D QLV+ TT + ++ + + KK+G+ P + Sbjct: 121 TQAKPEGFETLIVTGDRDSFQLVNDTTTVLYPMRGVTTLHRFTPAAIEKKYGLTPTQYPD 180 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTA + +YG L N++ +A I+ K +N E + Sbjct: 181 FAALRGDPSDNLPGIPGVGEKTATKWIVQYGTLANLIDHADEIR-GKVGDNFRERVANVQ 239 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDAANI 299 L+R + + D+P+ L L + +I F LEF L RV + A + Sbjct: 240 LNRDITEMVKDLPLPYGPNELELRPADAQGIIDFFDRLEFGDNLRERVFRILSIEGAGV 298 >gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665] gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665] Length = 937 Score = 303 bits (777), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 156/427 (36%), Positives = 254/427 (59%), Gaps = 17/427 (3%) Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY--- 614 P+++ + + L+ P+ ++++ME+ GI +D D L + + + + +E+ + Sbjct: 515 PQVLDRGAQRLLQELEIPLSRLLARMELAGIAVDVDALTDLREDFTAAADAAKESAWASV 574 Query: 615 --DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNI 671 + G + NL SPKQL ++LF +L P KTKTG + T L+ + +P ++N+ Sbjct: 575 AEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTG-YSTDVDSLQDLLEQTRHPFLENL 633 Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731 + R +K++ T L R+HT YS + TGRL+SL PNLQNIP++T+ G+ Sbjct: 634 MAHRDATKLRQTVEGLL--ETVAPDDRIHTTYSQTAAATGRLSSLHPNLQNIPVRTEAGR 691 Query: 732 KIRRAFISPPTKK----LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 +IR F++ L+SADYSQIE+RI+AH+++ L Q F D+H V +++FG Sbjct: 692 RIREVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFG 751 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 V+ ++V+ + R K +++ + YG+S F L+ QL+I EA +K YF RF G+ +Y+ Sbjct: 752 VDPDEVTAEQRAKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYFDRFGGVRDYLR 811 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 RQ+GY TI GRR + +++S +R++ ERAA+NAPIQGSAADI +RAM+ V Sbjct: 812 DVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERAALNAPIQGSAADIIKRAMLDV 871 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 LE+H LA+++LLQ+HDEL+ EVP E+ A+ ++ M +A L VPL V++ Sbjct: 872 QAGLEEHGLASRLLLQVHDELILEVPAAELEQATALLEERMGRAA----ELSVPLDVHVG 927 Query: 968 VSNNWQE 974 +W + Sbjct: 928 RGRSWHD 934 Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 107/289 (37%), Positives = 160/289 (55%), Gaps = 10/289 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L ++DG S +RAFYA P + D G NA+ GF ML +++ R +H AV Sbjct: 11 QRLLVLDGHSMAFRAFYALPAENFATDTGQHTNAVYGFTAMLLTMIRQQRP----THVAV 66 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E Y +YKA R + P Q+ L +A GIP + ++G+EADDI+AT Sbjct: 67 AFDLSGPTFRSEEYAEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTLEGYEADDIVAT 126 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKI---DIEHVIKKWGIPPEKM 179 + AE+ G+ ++S D+D QL+S TT LY I D + V+ K+G+ P + Sbjct: 127 LSARAEEAGWEAVVVSGDRDAFQLISERTTVLYPKKGVSDIPPMDADAVLAKYGVAPAQY 186 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DN+PG+PG+G AA L++YG+L+ +L +A I KK E + E+ E Sbjct: 187 PELAALVGEAADNLPGVPGVGPGFAAKWLKQYGDLDGVLAHAHEITGKK-GEALREHLED 245 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 R +R+L L D+ + I LE + LE + AL+F ++ RV Sbjct: 246 VRRNRRLNALVRDLDLPIGLEAMRLEMPEREPVEELFDALQFNRIRERV 294 >gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702] Length = 901 Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 193/614 (31%), Positives = 322/614 (52%), Gaps = 54/614 (8%) Query: 374 TKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLD-----QKDDTSFKVETIF 428 T + W+ K A +K+ DA +P+A+ ++ + + D + + Sbjct: 322 TGKLATWLTK-----HAGWKVNRPAGDAAVHRPLAVTVTGVGTPAGGRADRIALLDPVVG 376 Query: 429 IDLSVH------TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS 482 D ++H T QD + TL + + + K H+ K + L+ G+ Sbjct: 377 EDGALHAVDIDLTDQDPADEATL--------RAWLADRGAPKWVHDAKAEWHKLNGSGLV 428 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH 541 + G E D L +Y+L + D+A + Q+ + + EI ++ Sbjct: 429 LAGVEQDTALAAYLLRPDLRTGDLADVVQRHVGH---EITADAPGAV------------- 472 Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 + +L L P+L + +Y L+ P+ V+++ME TGI +D L+ +S E Sbjct: 473 ---CAQATAELVAALTPELAEIGAMELYLDLEVPLATVLAKMEATGISVDAASLRDLSDE 529 Query: 602 ISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 + + ++G+ NLSSPKQL +LF L+ P KTKTG + T A +LE++ Sbjct: 530 YGVQIEAEIAEARTIAGDDTLNLSSPKQLQKVLFETLELPKTKKTKTG-YSTAAGELEKL 588 Query: 661 NCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 +P + +++ R+ K+KST D L + R+HT ++ TGRL+S +PN Sbjct: 589 AASHPHPFLGHLMAHREYQKMKSTI-DGLIEAVAD-DGRIHTTFNQRGAATGRLSSSDPN 646 Query: 720 LQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 LQNIP++T+ G++IR AF + LI+ADYSQIE+R++AH+++ L + + D+H Sbjct: 647 LQNIPVRTEAGRRIRGAFRVGTGYATLITADYSQIEMRVMAHLSQDPGLIEAYRAGEDLH 706 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 V +++F V +E V+P++RR K +++ ++YG+S F L+ QLRI EA + YF R Sbjct: 707 NYVGSKVFDVPVEHVTPELRRRVKAMSYGLVYGLSAFGLSQQLRISAGEAKQIMDNYFER 766 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 F G+ Y+++ ++ GY ET++GRR + E+NS RAA+NAPIQG+AAD Sbjct: 767 FGGVKRYLDEVVAHAKETGYTETLYGRRRYLPELNSSNRVAAEAAGRAALNAPIQGTAAD 826 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I +RAM+ V LA+++LLQ+HDELV EV + E ++I+ M+ A +L Sbjct: 827 IIKRAMLRVDAEFTRRDLASRVLLQVHDELVVEVVDGEQDVVTEILREQMDGAA----DL 882 Query: 959 RVPLKVNIKVSNNW 972 RVPL V+ V ++W Sbjct: 883 RVPLDVSTGVGSDW 896 Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 102/309 (33%), Positives = 156/309 (50%), Gaps = 13/309 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P + G NA+ GF ML L++N +H A F Sbjct: 15 LLLLDGHSLAFRAFYALPAQNFSTTGGQHTNAVYGFLGMLLGLVENEHP----THIATAF 70 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+E +P+YKA RP P Q+ L++ QA G+ + + +EADDIIAT Sbjct: 71 DLSGPTFRSETFPEYKAQRPSTPPEFHGQVELIQETLQALGVTTLTKEAYEADDIIATLA 130 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 G V I + D+D QLV+ + T+K ++ V +K+G+ P + Sbjct: 131 TRGAAAGMRVLICTGDRDSFQLVTEDVTVLYTLKGVSELDRFTPARVEEKYGVTPTQYPD 190 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL GD+ DN+PG+PG+G KTA + YG+LE ++ + I K +N+ ++ Sbjct: 191 LAALRGDTSDNMPGVPGVGPKTAQKWITGYGSLEGVVEHKDEIGGKV-GQNLRDHLADVL 249 Query: 242 LSRKLV-MLRT-DVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAAN 298 L+R + M+R D+ LE L + + +AL+F T L NR T+ + + Sbjct: 250 LARNITEMVRDLDLGEAGQLEALTPGTPDPTASLDMFEALQFGTTLRNRAFRTFGVEFED 309 Query: 299 IEPVVLDIN 307 E L ++ Sbjct: 310 GEAAALTMD 318 >gi|227548116|ref|ZP_03978165.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] gi|227079778|gb|EEI17741.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] Length = 874 Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 183/531 (34%), Positives = 303/531 (57%), Gaps = 30/531 (5%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509 S LK + E+E K H+ K +L I++RG D + +Y+L G+ ++++ + Sbjct: 364 SALKVWVESED-PKYLHDAKTVFHMLKGRDITLRGIAHDTAIAAYLLRPGQRTYELHDVY 422 Query: 510 QKWLSYTRKEILKSRKSSIPIDKIS---DSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 Q+ L R+ ++ D++S D+ + ++++ +L+L L +L Sbjct: 423 QRHLQ---------RQLNLGGDQLSLLGDTSL----VDSAAAVLELAEELSAQLRGIDSY 469 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSS 625 +Y L+ P++ ++++ME GI +D D+L+ + + + +EE L E NLSS Sbjct: 470 DLYADLELPLVSILAEMENAGIAVDVDVLEAQLKDFTAKVAQVEEEARQLVDEPSLNLSS 529 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTY 684 PKQL +LF KL+ P KTKTG + T A ++E + +P + +L R+ K+KST Sbjct: 530 PKQLSVVLFDKLELPKTKKTKTG-YSTAAGEIEALAETNPHPFLDKLLAHREYQKMKSTI 588 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTK 743 + L + R+HT + TGRL+S +PNLQNIP++T+ G+KIR AF + + Sbjct: 589 -EGLIKAVAD-NGRIHTTFKQTVASTGRLSSTDPNLQNIPVRTEAGRKIRSAFTVGAGYE 646 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 L++ADYSQIE+R++AH+++ + L + + D+H V + +F V I++V+P++RR K Sbjct: 647 CLLTADYSQIEMRVMAHLSQDSGLIEAYREGEDLHNFVGSRVFDVPIDQVTPELRRRVKA 706 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +++ ++YG+S + L+ QL I EA ++ YF RF G+ Y++ R++GY T+F Sbjct: 707 MSYGLVYGLSAYGLSNQLSISAGEAKSIMESYFERFGGVKSYLDNVVEQARRDGYTSTVF 766 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 GRR + E+ S R ERAA+NAPIQGSAADI + AMI V ++LE +++LLQ Sbjct: 767 GRRRYLPELTSDNRVARENAERAALNAPIQGSAADIIKVAMIRVDRALE--SFNSRVLLQ 824 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDELV E+ E+ +I+ M+ A I L VPL+V+ NW E Sbjct: 825 VHDELVVEIAPGELAEVREIVEREMDSA----ITLLVPLEVSAGTGVNWDE 871 Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 104/325 (32%), Positives = 161/325 (49%), Gaps = 24/325 (7%) Query: 8 FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+DG S +RAF+A P + G NA+ GF +M ++ E +H AV FD Sbjct: 1 MLIDGHSMAFRAFFALPAENFSTSGGQHTNAVYGFLSMFANII----AEEKPTHAAVAFD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR + +PDYKA R P Q+P++ GI + + FEADDI+AT Sbjct: 57 VGRTTFRTQRFPDYKAQREASPPEFKGQVPIIEDVLGELGIVTLSKENFEADDIVATLVT 116 Query: 127 IAEKEG-FAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 A G F + ++S D+D +QLV +T L ++ + E V +K+G+ P + Sbjct: 117 EARAAGDFEIVLVSGDRDYIQLVDASTTLLYPMRGVSNMTRFTPESVEEKYGLTPAQYPD 176 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+P +P +G KTA + +YG+L++++ +A IK +N E + R Sbjct: 177 FAALRGDPSDNLPSVPKVGEKTATKWIAQYGDLDSLIEHADEIKGVA-GDNFRERIDQVR 235 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-----KLINRVATTYDCDA 296 L+R+L + TDV + + E L ++ + + S LEF +++ V TT + A Sbjct: 236 LNRELTQMVTDVELPVGPEDLEVKPADVNAVASSFDNLEFGVNLRERVLAAVPTTGEAPA 295 Query: 297 A--------NIEPVVLDINTTENKG 313 +IE LD TE KG Sbjct: 296 PEVEELQEIDIEDTPLDQWLTERKG 320 >gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] Length = 891 Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 170/539 (31%), Positives = 292/539 (54%), Gaps = 13/539 (2%) Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSG 499 G +TL + + + + + + H+ K L G ++RG D + +Y++ Sbjct: 362 GVDTLDADDEAAIAGWLADAERPVVLHDAKGQLHALAAQGWTVRGLVADTAIATYLVRPD 421 Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559 + ++D+A ++ ++L +E++ + + + + A++ + L LW ++ + Sbjct: 422 QRAYDLADLSVRYL---HRELVTTGADTGQLAFEEVDTGADVAVQRARAALDLWAVIGAE 478 Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 L + + L+ P++DV+ ME TGI +D D L + AE ++ +L + Y + G Sbjct: 479 LEASDSMSLLADLELPLVDVLMTMESTGIAVDTDHLDTLHAEFTERMLGAAQEAYAVIGR 538 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLS 678 + NL SPKQL +LF +L P +TKTG + T A L+ + +P ++++L R ++ Sbjct: 539 EVNLGSPKQLQVVLFDELGMPRTKRTKTG-YTTDADALQGLFAKTQHPFLEHLLAHRDVT 597 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF- 737 +++ T + L + R+HT Y+ TGRL+S +PNLQNIPI+T+ G++IR AF Sbjct: 598 RLRQTV-EGLQKTVAP-DGRIHTTYAQTIAATGRLSSADPNLQNIPIRTESGRRIREAFC 655 Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797 + P + L++ADYSQIE+RI+AH+++ L + F D H ++AA++F + + + Sbjct: 656 VGPGFETLLTADYSQIEMRIMAHLSEDAGLIEAFRTGEDFHTVMAAKVFDRDPGDIDGGL 715 Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857 R K +N+ + YG+S + L QL I +A + YF F G+ +Y+ + RQ G Sbjct: 716 RARIKAMNYGLAYGLSSYGLGQQLGISPGDAQVLMDDYFQTFGGVRDYLHGVVDEARQTG 775 Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917 + TI GRR + ++ S R + ER A+NAPIQGSAAD+ + AM+ V ++L D L Sbjct: 776 FTATILGRRRYLPDLQSDNRQRREMAERMALNAPIQGSAADLIKVAMLGVDRALADAGLG 835 Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 ++MLLQ+HDELV EV E ++ M A +L VPL V++ V W E Sbjct: 836 SRMLLQVHDELVLEVAPGERDALEALVREQMAAAA----DLSVPLDVSVGVGRTWHEAG 890 Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 112/355 (31%), Positives = 181/355 (50%), Gaps = 25/355 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + L L+DG S YRAF+A P+ + G NA+ GF +ML +L ++ +H AV Sbjct: 5 DRLLLIDGHSVAYRAFFALPVENFATTTGQHTNAVFGFTSMLINVL----RDETPTHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E Y +YK NR K P+ Q+PL++ A GI E GFEADDII T Sbjct: 61 AFDVSRRTFRTEEYAEYKGNRSKSPDEFKSQIPLIKEVLDALGIRTFEKDGFEADDIIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 T A++ G V I + D+D +QLV+ TT + K ++ E V +K+G+ P + Sbjct: 121 LTREAQEAGMEVLICTGDRDALQLVTDTTTVLYPRKGVSDLARMTPEVVREKYGVDPAQY 180 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DN+PG+PG+G KTAA + YG+LE+++ ++ K ++ E+ ++ Sbjct: 181 PELAALVGETSDNLPGVPGVGPKTAAKWIATYGSLESLVAEVDQVPGKA-GASLREHLDS 239 Query: 240 ARLSRKLVMLRTDVPI-TIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT---TYDCD 295 +R++ L D+ + +P + N + + +LEF L R+ + D Sbjct: 240 VLRNRRINALVRDLSLDAVPADLAFSTKWNREAIHTVFDSLEFAALRERLFSYLGGGDES 299 Query: 296 AANIEPVVLDINTTENKGIA-----------IETEIDRDTTIKTSQFSSLSDQTS 339 A V +++ G+A + E+D DTT ++ +L+ T+ Sbjct: 300 VAADAAVDVELTVVPAGGVAAWLSEHVGADPVGLEVDGDTTPTDARARALAIATA 354 >gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963] Length = 915 Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 178/535 (33%), Positives = 297/535 (55%), Gaps = 12/535 (2%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRS 501 +T T E + L + + K H K+ L G ++ G D L +Y++ G+ Sbjct: 383 STATPEDEAALGDWLADASQPKALHEAKWAIHALRGRGWTLGGLTSDTALAAYLVRPGQR 442 Query: 502 SHDIASIAQKWLSYT-RKEILKSRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPK 559 S ++ ++ ++L R E + S+ D D++ E A+ ++ +L L L + Sbjct: 443 SFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAEAAETAMLSAQAVLDLAAALGTE 502 Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 L + + ++ P+ ++Q+E TGI +D L + + + + + Y++ + Sbjct: 503 LESIESKSLLSDMELPLTIELAQIEATGIVVDSAHLHDLQSRFASQVADAANSAYEVIDK 562 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLS 678 + NL SPKQL +LF +L P KTKTG + T A+ L+ + + +P ++++L R + Sbjct: 563 QINLGSPKQLQVVLFEELDMPKTKKTKTG-YSTDAEALQGLFDKTGHPFLEHLLAHRDAT 621 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 ++K T D L + + R+HT ++ TGRL+S +PNLQNIP++ D G++IR F+ Sbjct: 622 RMKVT-VDGLLKAVAE-DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRNDAGREIRDGFV 679 Query: 739 -SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797 L++ADYSQIE+RI+AH++ L + F D+H V + FGV IE+V+P++ Sbjct: 680 VGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPEL 739 Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857 RR K +++ + YG+S + LA+QL+I EA + YF RF G+ +Y+ R++G Sbjct: 740 RRRVKAMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDG 799 Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917 Y T++GRR + ++NS R + ERAA+NAPIQG+AADI + AMI+V K+L D L Sbjct: 800 YTSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQKALADAGLK 859 Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++MLLQ+HDELV EV E+ + ++ M A I L VPL V++ +W Sbjct: 860 SRMLLQVHDELVLEVVASELEEVTALVKDKMATA----IELSVPLDVSVGTGRSW 910 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 161/293 (54%), Gaps = 16/293 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P + K H G NA+ GF +ML LL++ + +H A F Sbjct: 28 LMLLDGHSLAFRAFYALPAENFKTHSGQATNAVYGFTSMLINLLRDEQP----THLAAAF 83 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR +++P+YKA R K P+ Q+ + + A GIP + +GFEADD+IAT T Sbjct: 84 DVSRQTFRADLFPEYKAQRAKAPDEFKGQIDITKDVLGALGIPVMAEEGFEADDVIATLT 143 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 AE G+ V +++ D+D +QLV+ T LY + + V +K+ + P + Sbjct: 144 TQAEALGYRVLVVTGDRDSLQLVTDNVTVLYPKKGASELTRFTPTAVEEKYSLSPAQYPD 203 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238 AL GD DN+PGIPG+G KTA ++EYG+L+ ++ N +++ K REN+ Sbjct: 204 FAALRGDPSDNLPGIPGVGEKTATKWIREYGDLQGLVDNVDKVRGKVGDSLRENL----A 259 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 L+R+L + DVP+ E L+L + ++ + LEF L +R+ T Sbjct: 260 NVLLNRQLTEMVRDVPLPYTPEQLVLAPWDREKIHALFDDLEFKVLRDRLFAT 312 >gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium] Length = 803 Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 166/414 (40%), Positives = 248/414 (59%), Gaps = 8/414 (1%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L VY ++++P+++V+ + TGI +D L +S + L +LE IY +G +FN++ Sbjct: 386 LASVYVKIEQPLMEVLQHINATGITLDTAYLAGLSVTMHTELTALEGKIYTHAGREFNIN 445 Query: 625 SPKQLGDILFTK--LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 SPKQ+G++LF + LK + KT GQ T +LE++ D+PII IL +R+L K+ S Sbjct: 446 SPKQMGEVLFDEMGLKPKNQKKTAGGQRSTKESELEKMRE-DHPIITEILRYRELQKLVS 504 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D+LP ++ R+ T + TGR+AS PNLQNIPI+T+ + IR+AF++ P Sbjct: 505 TYIDNLPPLVSA-DGRLRTTFVQTGAATGRMASQNPNLQNIPIRTEESKAIRQAFVASPG 563 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 ++S DYSQIELRI A +++ + ++F D+H VA +FGV E+V+ +MRR AK Sbjct: 564 YSIVSIDYSQIELRIAAILSRDEKMVEIFARGEDVHTGVAVRVFGVTPEEVTREMRRKAK 623 Query: 803 TINFSIIYGISPFRLATQL--RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 INF I+YG+ L L R EA ++ YF+ F + EY+E+TK F R+NGY E Sbjct: 624 VINFGILYGMGVNALRGNLGEGTSREEAQEFFNAYFNTFTRLAEYLEETKAFARKNGYTE 683 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--T 918 T+FGRR H+ + S IR ER AINAP+QG+AAD R AM V++ ++ K Sbjct: 684 TLFGRRRHFPGMQSTAPFIRAQAERMAINAPVQGTAADAMRVAMNLVYQYIQTEKKTDDV 743 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +LLQ+HDEL+FE+ + T +V M+ VP+K ++ V NW Sbjct: 744 HILLQVHDELLFEIKNNVLETEIPKLVELMQGVLEGYDTSGVPIKADVAVGPNW 797 Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 152/305 (49%), Gaps = 20/305 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+D + ++RA++A P + G P A+ G ML K++++ + + IA+ FD Sbjct: 19 LVLLDSHAILHRAYHALPDFASP-SGEPTGALYGVVAMLLKIIEDFKPDYIAA----CFD 73 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P T+R+E + YK R K + L+ Q+ R AFGIP E GFEADD++ T Y Sbjct: 74 LPEPTYRHEAFAAYKGTRSKTDDALVQQIIRSRDIFAAFGIPIYEHPGFEADDMLGTIAY 133 Query: 127 -IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPPEKMV 180 + + V I S D D MQ V T+K+ D E V +++G P+ + Sbjct: 134 QTRDDKDLTVIIASGDMDTMQCVEKKRVQVYTLKKGIKDTILYDEEAVKERFGFGPKLVP 193 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ-------KKRRENI 233 + L GD+ DNIPGI GIG KTA L+ ++G++++I + + K R + Sbjct: 194 DYKGLRGDTSDNIPGIVGIGEKTATDLITQFGSIDDIYKKLKKDEAPFLAAGIKPRIIGL 253 Query: 234 LEYA-ETARLSRKLVMLRTDVPIT-IPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 L+ E A+ S+ L +RTD PIT +P E + +++ L F L ++ T Sbjct: 254 LKAGEEEAQFSKMLATIRTDAPITFVPHATHWQERADTDVILNLFSELGFRTLGAKIKTL 313 Query: 292 YDCDA 296 + A Sbjct: 314 FALAA 318 >gi|300933405|ref|ZP_07148661.1| DNA polymerase I [Corynebacterium resistens DSM 45100] Length = 864 Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 156/435 (35%), Positives = 264/435 (60%), Gaps = 9/435 (2%) Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 + + + L +L KL K +Y L+ P+ ++++ME GI +D + L+++S + Sbjct: 434 GFDRAQAVRDLVKVLTEKLAAAKQEELYYDLEVPLCLILARMEHEGIAVDGEHLQELSND 493 Query: 602 ISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 + + +L+G+ NLSSPKQL +LF P +TKTG + T A +LE++ Sbjct: 494 YAAKIDEEIAAARELAGDSTLNLSSPKQLQKVLFDDFDLPKTKRTKTG-YSTAAAELEKL 552 Query: 661 NCGDN-PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 N P + +++ R+ K+K+T D L I R+HT ++ TGRL+S +PN Sbjct: 553 TAQTNHPFLAHLMAHREYQKMKTTI-DGLIEAIGD-DGRIHTTFNQKGAATGRLSSSDPN 610 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIP++TD G++IR AF + + L++ADYSQIE+R++AH+++ L + +++ D+H Sbjct: 611 LQNIPVRTDAGRRIRAAFHAGWGETLLTADYSQIEMRVMAHLSQDEGLIEAYKSGEDLHN 670 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 V + +F V +++V+P++RR K +++ ++YG+S F L+ QL I EA ++ YF RF Sbjct: 671 YVGSRVFDVPVDQVTPELRRRVKALSYGLVYGLSAFGLSQQLGISAGEAKVIMENYFTRF 730 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 G+ Y+++ + ++ GY ET++GRR + E+NS R ERAA+NAPIQG+AADI Sbjct: 731 GGVKRYLDEVVHQAKETGYTETLYGRRRYLPELNSSNRVARENAERAALNAPIQGTAADI 790 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + AM+ V +++ + L +++LLQ+HDELV EV + E+ S+++ M+ A LR Sbjct: 791 IKLAMLRVDRAIREQNLKSRVLLQVHDELVVEVAKGELDKVSELVQREMDAAA----RLR 846 Query: 960 VPLKVNIKVSNNWQE 974 VPL+++ NW E Sbjct: 847 VPLEISAGHGKNWDE 861 Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 92/250 (36%), Positives = 141/250 (56%), Gaps = 11/250 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P + G NA+ GF M L++ + +H A F Sbjct: 6 LLLLDGHSLAFRAFYALPAANFSTTGGQHTNAVYGFLGMFLGLMEKEQP----THVAAAF 61 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E +P+YKA RP P Q+ L+R A +A GI ++ + +EADDIIAT Sbjct: 62 DLSGPTFREEHFPEYKAQRPSTPPEFKGQITLIRKALEALGITTLDKEAYEADDIIATLA 121 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 A+K G I + D+D +QLV+ + T+K + E V KK+G+ P++ Sbjct: 122 TEADKAGMETLICTGDRDSLQLVNDDITVLYTLKGVSDLHRFTPEAVEKKYGVTPQQYPD 181 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL GD+ DN+PG+PG+G KTA + +YG+L+ ++ IK K E++ E+ ++ + Sbjct: 182 LAALRGDTSDNMPGVPGVGPKTAQKWISQYGSLQGVIDVMDSIKGKV-GESLREHIDSVK 240 Query: 242 LSRKLV-MLR 250 L+R++ M+R Sbjct: 241 LAREITEMVR 250 >gi|288919856|ref|ZP_06414180.1| DNA polymerase I [Frankia sp. EUN1f] gi|288348771|gb|EFC83024.1| DNA polymerase I [Frankia sp. EUN1f] Length = 891 Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 179/537 (33%), Positives = 290/537 (54%), Gaps = 11/537 (2%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRS 501 LT + L + + K GH++K L L G ++ G D L +Y+ G+ Sbjct: 362 TALTAADSAALGAWLADPDRAKAGHDLKGPMLALAEAGFTLAGVTSDTALAAYLALPGQR 421 Query: 502 SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561 S D+A + ++L K ++ + +D ++ E + L+L L L Sbjct: 422 SFDLADLTLRYLHRELKSDTET-NGQLTLDGSGEADEAEADAIRARAALELAAALDGDLE 480 Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 + ++ P++ V+++ME GI D++ L ++ S + + + L G F Sbjct: 481 RRSAARLLREMELPLVHVLARMERAGIAADEEHLTELQKHYSAEVADVAAQAHGLVGRSF 540 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKI 680 NL SPKQL ILF +L P K KTG + T A L + D+P+I +L R ++++ Sbjct: 541 NLGSPKQLQQILFDELALPKTKKIKTG-YTTDADALAWLATQSDHPLIPVLLHHRDVARL 599 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739 K T DSL I+ R+HT ++ TGRL+S +PNLQNIPI+T G++IRRAF+ Sbjct: 600 K-TVVDSLIPMIDD-AGRIHTTFNQMIAATGRLSSTDPNLQNIPIRTPQGRQIRRAFVVG 657 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 P + L++ADYSQIE+R++AH++ L + F + D+H VAA+ F + + +V P++RR Sbjct: 658 PGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHTFVAAQAFDLPVSEVDPELRR 717 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 K +++ + YG+S F LA QL I EA +++ YF RF G+ +++ + R++GY Sbjct: 718 RIKAMSYGLAYGLSAFGLAGQLGIAPDEAREHMDAYFARFGGVRDFLRGVVDQARRDGYT 777 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 ETI GRR + ++ S + R + ER A+NAPIQGSAADI + AM+ V ++L L ++ Sbjct: 778 ETIMGRRRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIKIAMLGVDRALRSRDLRSR 837 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 +LLQ+HDELV E+ E ++ M A + VPL+V++ W + Sbjct: 838 LLLQVHDELVLEIAPGERVEVEALVRAEMGAAY----EMSVPLEVSVGSGLTWDDAG 890 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 95/293 (32%), Positives = 146/293 (49%), Gaps = 10/293 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M L L+DG S YRAF+A P+ + G P NA+ GF +ML L++ + + Sbjct: 1 MADRPRLLLLDGHSLAYRAFFALPVENFSTSTGQPTNAVYGFTSMLINALRDEKP----T 56 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV +D P TFR+ Y +YKA R + P + Q+ L+ +A +P + G+EADD Sbjct: 57 HVAVAWDLPTPTFRHTQYAEYKAGRSETPADFVGQVALIHQVCEALAVPGVSAPGYEADD 116 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175 +IAT A EG V I++ D+D +QLV+ + T K + + V K+G+ Sbjct: 117 VIATLATQAAGEGMDVLIVTGDRDALQLVNEHVTVLMTRKGISDMTRFTPDEVQTKYGLS 176 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P + AL GD DN+P +PG+G KTA +Q++G+L +++ A I K Sbjct: 177 PTQYPDFAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLADLVDRADEIGGKTGASLRAN 236 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 A R +R L L +VP+ + L L + + L+F L R+ Sbjct: 237 LANVIR-NRSLTELAREVPLELGPGDLRLHPWDREAVHQLFDTLQFRVLRERL 288 >gi|326333433|ref|ZP_08199676.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1] gi|325948738|gb|EGD40835.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1] Length = 895 Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 176/539 (32%), Positives = 293/539 (54%), Gaps = 11/539 (2%) Query: 440 TGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDS 498 G T E + L + + KI H+ K +L + +G S+RG D L +Y++ Sbjct: 361 AGVEGFTPEDEAALAGWLADATKPKIMHDAKGPELAIDAHGWSLRGLVTDTALSAYIVAP 420 Query: 499 GRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 + S+D+A + ++L ++E ++S D++ V ++ + +L L L Sbjct: 421 DQRSYDLADLTLRYLKRELKQEDDGGQESLFGDDEVGGDGVATTSMLYARAVLDLAAELD 480 Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617 + + ++ P++ ++++ME TGI +D + L + + + + Y + Sbjct: 481 SAVEAAGGDRLLSEVELPLLHLLARMEKTGIAVDTEHLDALERHFAGQMKQAADEAYGVI 540 Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQ 676 G++ NL SPKQL +LF +L P +TKTG W T A L+Q+ ++P + +L R Sbjct: 541 GKEINLGSPKQLQVVLFDELDMPKTKRTKTG-WTTDADALQQLYVKTEHPFLLALLRHRD 599 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 +++++ T L + R+HT ++ TGRL+S EPNLQNIP++T+ G+ IR+ Sbjct: 600 VTRLRVTIEGLLKT--VQDDGRIHTTFNQTIAATGRLSSTEPNLQNIPVRTEEGRGIRKG 657 Query: 737 FI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F+ + L++ADYSQIE+RI+AH+++ L + F + D H + AA +FGV+ + VS Sbjct: 658 FVVGGGFESLMTADYSQIEMRIMAHLSEDELLIEAFRSGRDFHSITAARVFGVDPDAVSV 717 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 + R K +N+ + YG+S F L+ QL I SEA ++ YF F GI +Y+ R+ Sbjct: 718 EQRAKIKAMNYGLAYGLSAFGLSQQLGIEPSEARGLMEEYFETFGGIRDYLRSLVEEARR 777 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GY ETI GRR + ++ S R ER A+NAPIQGSAAD+ + AM+ V ++++ Sbjct: 778 TGYTETIMGRRRYLPDLLSDNRQRRETAERMALNAPIQGSAADLIKVAMLRVQAAIDEAD 837 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+++MLLQ+HDELVFEV E ++ M A +L VPL V++ +W E Sbjct: 838 LSSRMLLQVHDELVFEVAPGEREALESLVRAQMGSAA----DLNVPLDVSVGTGLSWHE 892 Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 100/282 (35%), Positives = 150/282 (53%), Gaps = 10/282 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + L L+DG S YRAF+A P+ + G NA+ GF +ML +L ++ +H AV Sbjct: 7 DRLLLLDGHSLAYRAFFALPVENFSTVTGQNTNAVYGFTSMLVNVL----RDETPTHVAV 62 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E Y +YKA R K P+ QLPL++ I + + G+EADDIIAT Sbjct: 63 AFDLSRQTFRLEEYSEYKAKRNKTPDEFKSQLPLIQRLLDVLHIRHLSVAGYEADDIIAT 122 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLY---DTVKEEKIDIEHVIKKWGIPPEKM 179 + G V I++ D+D +QLV+ +T LY ++ E V K+G+PP + Sbjct: 123 LVTQGLEAGMEVLILTGDRDSLQLVTESSTVLYPMRGVSDLARMTPEAVETKYGVPPHRY 182 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G+ DN+PGIPG+G KTAA + Y L+N++ +A +IK K +N+ + Sbjct: 183 PELAALVGEDSDNLPGIPGVGPKTAAKWINTYDGLDNVITHADQIKGKA-GDNLRAHLGD 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 +R+L L D+P+ + L + + + L LEF Sbjct: 242 VMRNRRLNALVRDLPLEVGPTDLGRVEWDRAAALELLDELEF 283 >gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233] gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233] Length = 902 Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 179/533 (33%), Positives = 295/533 (55%), Gaps = 21/533 (3%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA 509 + L +F + K+GH++K L G + G D L +Y+ G+ + D+ + Sbjct: 375 AALAAWFADPTPTKVGHDLKTAVNALTARGWPVGGVACDTALAAYLALPGQQTFDLGDLV 434 Query: 510 QKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIE--NSNVILQLWLLLRPKLIVEK 564 Q++L T ++ S+ ++ +Q ++ + + + I+ L L L Sbjct: 435 QRYLHRTLDPEHSTNAGQQLSLIPEENEGAQTEQDSRDMVRARAIIDLAEALEQHLDSLG 494 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 + ++ P++ V+ +ME GI +D D L + + + + S + Y G + NL Sbjct: 495 QKSLLADIELPVMTVLGEMERDGIAVDVDYLDDLQSTFAAEVTSAAKACYAEIGREVNLG 554 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL----EQINCGDNPIIKNILEWRQLSKI 680 SPKQL +LF +L P +TKTG + T A L EQ +P + ++L R ++++ Sbjct: 555 SPKQLQVVLFDELGMPKTKRTKTG-YTTDADALVSLHEQTG---HPFLTHLLRHRDVTRL 610 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739 K T + L + R+HT + TGRL+S EPNLQNIPI+TD G+ IRRAF+ Sbjct: 611 KVT-VEGLRKSVGD-DGRIHTTFQQTVAATGRLSSTEPNLQNIPIRTDEGRLIRRAFVPG 668 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 P L++ADYSQIE+RI+A +++ L + F + D+H VA + FG+ E+V+P++RR Sbjct: 669 PQADLLLTADYSQIEMRIMATLSEDEGLIEAFRSGEDLHTFVAMKAFGLPAEQVTPELRR 728 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 K +++ + YG+S + L+ QL+I EA + ++ YF RF G+ +Y+ T R++GY Sbjct: 729 RIKAMSYGLAYGLSAYGLSGQLKISVDEAKEQMEAYFSRFGGVRDYLRDTVARARKDGYT 788 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 ETIFGRR + ++NS R + ER A+NAPIQGSAAD+ + AM++V + + L ++ Sbjct: 789 ETIFGRRRYVPDLNSDNRQKRAMAERIALNAPIQGSAADVIKVAMVNVQRRIRAEGLRSR 848 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 MLLQ+HDELV EV +E+ ++++ M A L VPL+V++ NW Sbjct: 849 MLLQVHDELVCEVVADELAVMTELLKQEMGGA----YPLAVPLEVSVGSGANW 897 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 93/257 (36%), Positives = 133/257 (51%), Gaps = 10/257 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 E L L+DG S YRAFYA P + G NA+ GF +ML LL++ + +H A Sbjct: 10 ERVLLLMDGHSLAYRAFYALPPENFSTTTGQTTNAVYGFTSMLINLLRDEQP----THVA 65 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD T+R E + DYKANR P Q+ L++ A IP + + +EADDIIA Sbjct: 66 VAFDLSRQTWRREEFVDYKANRSASPSEFAGQIDLIKEVLTAMRIPYLTAENYEADDIIA 125 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEK 178 T A EG V I + D+D +QLVS T LY + + V K+G+ P + Sbjct: 126 TLATRAVAEGLNVRICTGDRDALQLVSDQVTLLYLQRGVSEMARYTPAAVEAKYGLTPLQ 185 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 AL GD DN+PGIPG+G KTA ++E+G+L ++ ++ K + + E Sbjct: 186 YPDFAALRGDPSDNLPGIPGVGEKTATKWIREFGSLTALVDRVDEVRGKA-GDALREALP 244 Query: 239 TARLSRKLVMLRTDVPI 255 +R+L L +VP+ Sbjct: 245 HVLTNRRLTELVREVPV 261 >gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152] gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152] Length = 910 Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 188/570 (32%), Positives = 309/570 (54%), Gaps = 31/570 (5%) Query: 408 AIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGH 467 A+AI+ D E+ +ID++V T +D + L + + K H Sbjct: 362 ALAIAAADG--------ESGYIDVTVLTPEDE-----------AALAAWLADPAVPKALH 402 Query: 468 NIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRK 525 K L G ++ G D L +Y++ G+ S ++ ++ ++L R E + + Sbjct: 403 EAKSAMHALRGRGWTLGGLTSDTALAAYLVRPGQRSFNLDDLSLRYLHRELRAETDDNAQ 462 Query: 526 SSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 S+ D+ + D++ + + +L L L +L + + ++ P++ V++ +E Sbjct: 463 LSLLDDEDAVDAETARAEMLRARAVLDLAAALDAELEQIESTALLTDMELPLLGVLATLE 522 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 GI +D + L+ + + + + E Y + G++ NL SPKQL +LF +L P + Sbjct: 523 EAGIAVDCEQLEALQRQFADKVAQAAEAAYGVIGKQINLGSPKQLQVVLFDELDMPKTKR 582 Query: 645 TKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 TKTG + T A LE + +P ++++L R +++K T D L + R+HT + Sbjct: 583 TKTG-YTTDADALESLFEKTQHPFLEHLLAHRDATRLKVT-VDGLLKSVAD-DGRIHTTF 639 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762 + TGRL+S EPNLQNIPI+TD G+ IR F+ P +L++ADYSQIE+RI+AH++ Sbjct: 640 NQTIAATGRLSSTEPNLQNIPIRTDTGRMIRDTFVVGPGYAELMTADYSQIEMRIMAHLS 699 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 L + F + D+H VA++ F + I +VSP++RR K +++ + YG+S + L+ QL+ Sbjct: 700 GDEGLIEAFNSGEDLHSFVASKAFDIPIAEVSPELRRRIKAMSYGLAYGLSSYGLSAQLK 759 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 I +EA + + YF RF I +Y+ + R+ GY ET+FGRR + +++S R Sbjct: 760 ISTAEAKEQMDIYFSRFGRIRDYLYEVVEQARKVGYTETLFGRRRYLPDLDSSNRQRREA 819 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ER A+NAPIQG+AADI + AMI VH+ + + L ++MLLQIHDELVFEV E E Q Sbjct: 820 AERMALNAPIQGTAADIIKVAMIDVHRGIREAGLRSRMLLQIHDELVFEVAEGERDALEQ 879 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + M A I L VPL V++ +W Sbjct: 880 LAREKMSAA----IALSVPLDVSVGTGRSW 905 Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 107/290 (36%), Positives = 155/290 (53%), Gaps = 10/290 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKH-DGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + K G NA+ GF ML LL++ + +H A F Sbjct: 23 LLLLDGHSLAYRAFFALPAENFKTVTGQTTNAVYGFTAMLINLLRDEKP----THIAAAF 78 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E YP+YKANR + P+ Q+ L + A GIP + I GFEADD+IAT T Sbjct: 79 DVSRKTFRTEAYPEYKANRSQTPDEFRGQVELTKDVLGALGIPVMAIDGFEADDVIATLT 138 Query: 126 YIAEKEGFAVTIISTDKDLMQLV-SPTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A+ EGF + I++ D+D +QLV T LY + E V+ K+G+ P + Sbjct: 139 TQAKAEGFRILIVTGDRDSIQLVDDDVTVLYPRKGVSDLTRFTPEEVMTKYGLTPNQYPD 198 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA ++EYG+L ++ +K K + + + + Sbjct: 199 YAALRGDPSDNLPGIPGVGEKTAAKWIREYGDLATLVDKVDTVKGKV-GDALRAHLSSVV 257 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 L+R+L + DVP+ + L + ++ LEF L +R+ T Sbjct: 258 LNRQLTEMVKDVPLPYTPDQLAQGPWDREKIHRLFDDLEFRVLRDRLFET 307 >gi|240168007|ref|ZP_04746666.1| DNA polymerase I [Mycobacterium kansasii ATCC 12478] Length = 900 Score = 300 bits (767), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 178/510 (34%), Positives = 289/510 (56%), Gaps = 19/510 (3%) Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRK 525 KL +H G RG+ D L +Y++ G+ S + ++ ++L R E + ++ Sbjct: 395 KLAIHDLG--GRGWTLDGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPEQQQ 452 Query: 526 SSIPID-KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 S+ D + D Q + AI + + L L +L + ++ P+ V++ ME Sbjct: 453 LSLLDDMEGVDDQAVQTAILRARAVADLAEALDAELARIDSTALLADMELPVQRVLADME 512 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 GI +D LL ++ ++ + + E Y + G++ NL SPKQL +LF +L P + Sbjct: 513 RAGIAVDLRLLAELQSQFADQIRDAAEAAYAVIGKQINLGSPKQLQVVLFDELGMPKTKR 572 Query: 645 TKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 TKTG + T A ++ + +P ++++L R ++++K T D L N + R+HT + Sbjct: 573 TKTG-YTTDADAVQGLFEKTGHPFLQHLLAHRDVTRLKVT-VDGLLNSVAA-DGRIHTTF 629 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762 + TGRL+S EPNLQNIPI+TD G++IR AF+ +L++ADYSQIE+RI+AH++ Sbjct: 630 NQTIAATGRLSSTEPNLQNIPIRTDAGRQIRDAFVVGAGYSELMTADYSQIEMRIMAHLS 689 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 L + F D+H VA+ FGV I++V+ ++RR K +++ + YG+S + L+TQL+ Sbjct: 690 GDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSTQLK 749 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 I EA + +YF RF G+ +Y+ R++GY T+ GRR + E++S +R Sbjct: 750 ISTEEAKVQMDQYFARFGGVRDYLMAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREA 809 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ERAA+NAPIQGSAADI + AMI V K+L + LA++MLLQ+HDEL+FE+ E Sbjct: 810 AERAALNAPIQGSAADIIKVAMIEVDKALTEAGLASRMLLQVHDELLFEIAPGERERVEA 869 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ M A L VPL+V++ +W Sbjct: 870 LVREKMGGAY----PLDVPLEVSVGFGRSW 895 Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 115/302 (38%), Positives = 163/302 (53%), Gaps = 14/302 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG+S +RAFYA P + K GL NA+ GF ML LL ++ +H A F Sbjct: 13 LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 68 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+E YP+YKANR P+ Q+ + + A GI + GFEADDIIAT Sbjct: 69 DVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLGALGITVLAEPGFEADDIIATLA 128 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 AEKEG+ V +++ D+D +QLVS T LY V E + E V++K+G+ P + Sbjct: 129 TQAEKEGYRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPAQYPD 188 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTA + EYG+L+ ++ + ++ K A R Sbjct: 189 FAALRGDPSDNLPGIPGVGEKTATKWIAEYGSLQELVDHVDSVRGKVGDALRAHVANVVR 248 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 +R+L L DVP+ + L L+ + + LEF L +R+ +D AA +EP Sbjct: 249 -NRELTELVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRL---FDTLAA-VEP 303 Query: 302 VV 303 V Sbjct: 304 EV 305 >gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411] gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411] Length = 859 Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 172/523 (32%), Positives = 286/523 (54%), Gaps = 28/523 (5%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L ++ N K H+ K L G+++ G E D L +Y+L + +A + Q+ Sbjct: 357 LAEWLANPQATKWLHDSKKAYHTLQNQGLTLDGVEHDTSLAAYLLRPDVRTLSLADVVQR 416 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 + + E ++ P E + + +L L P++ +Y Sbjct: 417 HVGHELSE-----GATGP--------------ERAQAVAELVKALTPEIEAAGQAELYFD 457 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLG 630 L+ P+ +++ ME GI +D L+++S + L +L+GE + NLSSPKQL Sbjct: 458 LEVPLALILAAMEHAGIAVDDAALQELSDDYGARLNEEIAAARELAGEPELNLSSPKQLQ 517 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 +LF P KTKTG A+ + ++P + +++ R+ K+KST D L Sbjct: 518 KVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNHPFLGHLMAHREYQKMKSTI-DGLIE 576 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISAD 749 + R+HT ++ TGRL+S +PNLQNIP++TD G+KIR AF + + L++AD Sbjct: 577 AVGD-DGRIHTTFNQKGAATGRLSSSDPNLQNIPVRTDAGRKIRAAFTVGEGYETLLTAD 635 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIE+R++AH+++ L + + + D+H V + +F V +++V+P++RR K +++ ++ Sbjct: 636 YSQIEMRVMAHLSEDAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLV 695 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YG+S F L+ QL+I EA + YF RF G+ Y++ ++ GY ET++GRR + Sbjct: 696 YGLSAFGLSQQLKISAWEAKRIMDNYFERFGGVKRYLDHVVEVAKETGYTETLYGRRRYL 755 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 E+NS R ERAA+NAPIQG+AADI + AM+ V + + +LA+++LLQ+HDELV Sbjct: 756 PELNSSNRVARENAERAALNAPIQGTAADIIKLAMLRVDREITRQQLASRVLLQVHDELV 815 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EV E+ ++++ M+ A LRVPL V+ +NW Sbjct: 816 VEVAPGELEQITELVEREMDAAA----QLRVPLDVSAGTGDNW 854 Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 99/291 (34%), Positives = 150/291 (51%), Gaps = 17/291 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P + G NA+ GF M L+ + +H A F Sbjct: 4 LLLLDGHSLAFRAFYALPAANFSTVGGQHTNAVYGFLGMFLTLMDKEQP----THVAAAF 59 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E +P+YKA RP PE Q+ L+R +A G+ ++ + +EADDIIAT Sbjct: 60 DLSGPTFREESFPEYKAQRPSTPEEFKGQIELIRRTLEALGVTTLDKESYEADDIIATLA 119 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 K+G V I + D+D +QLV+ + T+K + + V +K+G+ P + Sbjct: 120 TEGAKDGMDVLICTGDRDSLQLVTEDVTVLYTLKGVSELHRFTPQAVEEKYGVTPTQYPD 179 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238 L AL GD+ DN+PG+PG+G KTA + +YG+L+ ++ N I K RENI + Sbjct: 180 LAALRGDTSDNMPGVPGVGPKTAQKWIAKYGSLQGVIDNMDDIGGKVGANLRENI----D 235 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRV 288 L+R + + D+ + L+ L D + + + L+F T L NR Sbjct: 236 NVVLARDITEMVRDLKLVDDLDALSPHDIDPNEALGMFEELQFGTGLRNRA 286 >gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3] gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3] Length = 945 Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 178/534 (33%), Positives = 288/534 (53%), Gaps = 12/534 (2%) Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSH 503 LT ++ L + + + K H++K L L + + G D L +Y+ G+ S Sbjct: 417 LTPADVAALGAWLADPNQPKAAHDVKGPMLALTELDLPLAGVTSDTALAAYLALPGQRSF 476 Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA-IENSNVILQLWLLLRPKLIV 562 D+A + ++L + +D ++ Q HA + L+L L L Sbjct: 477 DLADLVARYLHRDLSADPVPGGQQLTLDGSGEAD-QAHADAVRARACLELADALDADLER 535 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 + ++ P++ V++ ME GI +D + L ++ + ++ +++ G FN Sbjct: 536 RSAATLLRDIELPLVTVLAGMERAGIAVDSEHLTELQKHYGGEVSAVAAQAHEIVGRPFN 595 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIK 681 L SPKQL ILF +L P K KTG + T A L + D+P++ +L R ++++K Sbjct: 596 LGSPKQLQQILFDELGLPKTKKIKTG-YTTDADALAWLAVQSDHPLLPVLLRHRDVARLK 654 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SP 740 T DSL I+ R+HT ++ TGRL+S +PNLQNIPI+T G++IRRAF+ Sbjct: 655 -TVVDSLIPMIDD-IGRIHTTFNQTIAATGRLSSADPNLQNIPIRTAEGRQIRRAFVVGA 712 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 + L++ADYSQIE+RI+AH++ L + F + D+H VAAE FG+ + +V P++RR Sbjct: 713 GYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLHTFVAAEAFGLPVSEVDPELRRR 772 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 K +++ + YG+S F LA QL I EA +++ YF RF G+ +++ R++GY E Sbjct: 773 IKAMSYGLAYGLSAFGLAGQLGIAPDEAREHMDAYFARFGGVRDFLRGVVERARKDGYTE 832 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 TI GRR + ++ S S R + ER A+NAPIQGSAADI + AM+ V ++L A+++ Sbjct: 833 TILGRRRYLPDLTSDNSQRRQMAERMALNAPIQGSAADIIKIAMLGVDRALCAGGYASRL 892 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LLQ+HDELV E+ E +++ M A + VPL V++ W + Sbjct: 893 LLQVHDELVLEIAPGEHDAVERLVRAEMTSA----YTMSVPLDVSVGAGCTWDD 942 Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 94/287 (32%), Positives = 145/287 (50%), Gaps = 10/287 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAFYA P+ + G P NA+ GF +ML +L++ R +H AV + Sbjct: 60 LLLLDGHSLAYRAFYALPVENFSTTTGQPTNAVYGFTSMLINVLRDERP----THVAVAW 115 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D P TFR+ Y +YKA R + P + Q+ L+ A +P + G+EADD+IAT Sbjct: 116 DLPTPTFRHTQYAEYKAGRGETPADFVGQVSLIHQVCDALAVPGVSAPGYEADDVIATLA 175 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 + EG V +++ D+D +QLV + T K + + V K+G+ P + Sbjct: 176 TLGAAEGMDVLVVTGDRDALQLVDERVTVLMTRKGISDMVRFTPDEVQAKYGLSPVQYPD 235 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+P +PG+G KTA +Q++G+L ++ +A I K +E R Sbjct: 236 FAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAELVDHADEIGGKTGASLRAHLSEVIR 295 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +R L L DVP+ + L + + + L+F L R+ Sbjct: 296 -NRSLTELSRDVPLDVVPAGLRMRPWDREAVHQLFDTLQFRVLRERL 341 >gi|160944566|ref|ZP_02091794.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii M21/2] gi|158444348|gb|EDP21352.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii M21/2] Length = 857 Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 160/408 (39%), Positives = 247/408 (60%), Gaps = 9/408 (2%) Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK-FNLSSP 626 +Y ++ P+ V++ M TG+ +D+D ++Q ++ + L + I+ +G FN +SP Sbjct: 456 LYNEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLREELEQVLTRIHMETGSATFNPNSP 515 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG++LF + P G KT+ G W T A+ LE + + P+++++L++R K+ STY + Sbjct: 516 KQLGEMLFDTMGLPHGKKTQRG-WSTDAETLESLR--EYPLVEDVLQYRAYQKLNSTYVE 572 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 L I + R+H+ ++ TGRL+S PNLQNIPI+T+LG ++R F++ P L+ Sbjct: 573 GLLKVIGE-DGRIHSTFNQTEARTGRLSSDNPNLQNIPIRTELGSQLRAYFVAKPGCVLV 631 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 ADYSQIELRILAHI + Q F N DIHR AA+I+G+ +V+P++R AK INF Sbjct: 632 DADYSQIELRILAHITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINF 691 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YG + L+ + + EA ++K Y FP + Y++KT + NGYV T+FGRR Sbjct: 692 GIMYGKGAYSLSKDIGVTVKEADAFLKNYLAAFPSVSGYMDKTIADAKANGYVSTLFGRR 751 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 E+ S ++R ER A N PIQG+AAD+ + AM+ V K L D K+A++++L +HD Sbjct: 752 RTLPELASTNFNVRASGERMARNTPIQGTAADVIKLAMVRVWKRLRDEKMASRLILTVHD 811 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EL+ E PE E A++I+ ME C + VPL ++ NW E Sbjct: 812 ELIVEAPEAEAEQAARILREEME-GC---VQYAVPLSTDVHAGKNWLE 855 Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 108/291 (37%), Positives = 162/291 (55%), Gaps = 14/291 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DG+S RAFY LL+ K DG NAI GF N+L LL+ + + +A V FD Sbjct: 3 LLVIDGNSIANRAFYGIKLLTTK-DGRYTNAIYGFLNILLSLLKECQPDEVA----VAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+++Y YKA R +PE L Q+P+++ G + +G+EADDI+ T Sbjct: 58 LKAPTFRHKMYDGYKATRHAMPEELAQQMPVLKQLLADLGYRTVTAEGWEADDILGTLAA 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTC--LYDTV----KEEKIDIEHVIKKWGIPPEKMV 180 + + D+D +QLVS +T L TV K +D + + +K+G+ P++++ Sbjct: 118 ACAARKDDCFLATGDRDSLQLVSESTTVLLAATVMGRSKTVVMDEDAIQEKYGLAPKQLI 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAE 238 +++L GD+ DNIPG+ GIG KTA L+Q +G+LE + I+ RIK K+RE++LE Sbjct: 178 EVKSLMGDTSDNIPGVKGIGEKTALSLVQAFGSLEGVYQNIDDKRIK-PKQREHLLEDKP 236 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A LS L +RTD PI + + N P + L+ LE LI R Sbjct: 237 MAELSHTLGTIRTDAPIDTAEGSYTVGEGNKPAAVRLLQELEIHSLIPRFG 287 >gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] Length = 859 Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 171/523 (32%), Positives = 285/523 (54%), Gaps = 28/523 (5%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L ++ N K H+ K L G+ + G E D L +Y+L + +A + Q+ Sbjct: 357 LAEWLANPQATKWLHDSKQTYHTLQDQGLKLDGVEHDTSLAAYLLRPDVRTLGLADVVQR 416 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 + + E ++ P E + + +L L P++ +Y Sbjct: 417 HVGHELSE-----NATGP--------------ERAQAVAELVRALTPEIEAAGQAELYFD 457 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSPKQLG 630 L+ P+ +++ ME GI +D L+++S + L +L+GE + NLSSPKQL Sbjct: 458 LEVPLALILAAMEHAGIAVDDAALQELSDDYGARLNEEIAAARELAGEPELNLSSPKQLQ 517 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 +LF P KTKTG A+ + ++P + +++ R+ K+KST D L Sbjct: 518 KVLFETFDLPKTKKTKTGYSTAAAELEKLAAQSNHPFLGHLMAHREYQKMKSTI-DGLIE 576 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISAD 749 + R+HT ++ TGRL+S +PNLQNIP++TD G+KIR AF + + L++AD Sbjct: 577 AVGD-DGRIHTTFNQKGAATGRLSSSDPNLQNIPVRTDAGRKIRAAFTVGEGYETLLTAD 635 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIE+R++AH+++ L + + + D+H V + +F V +++V+P++RR K +++ ++ Sbjct: 636 YSQIEMRVMAHLSEDAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLV 695 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YG+S F L+ QL+I EA + YF RF G+ Y++ ++ GY ET++GRR + Sbjct: 696 YGLSAFGLSQQLKISAGEAKRIMDNYFERFGGVKRYLDHVVEVAKETGYTETLYGRRRYL 755 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 E+NS R ERAA+NAPIQG+AADI + AM+ V + + +LA+++LLQ+HDELV Sbjct: 756 PELNSSNRVARENAERAALNAPIQGTAADIIKLAMLRVDREITRQQLASRVLLQVHDELV 815 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EV E+ ++++ M+ A LRVPL V+ ++W Sbjct: 816 VEVAPGELEQITELVEREMDAAA----QLRVPLDVSAGTGDSW 854 Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 99/291 (34%), Positives = 150/291 (51%), Gaps = 17/291 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P + G NA+ GF M L+ + +H A F Sbjct: 4 LLLLDGHSLAFRAFYALPAANFSTVGGQHTNAVYGFLGMFLTLMDKEQP----THVAAAF 59 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E +P+YKA RP PE Q+ L+R +A G+ ++ + +EADDIIAT Sbjct: 60 DLSGPTFREESFPEYKAQRPSTPEEFKGQIELIRRTLEALGVTTLDKESYEADDIIATLA 119 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 K+G V I + D+D +QLV+ + T+K + + V +K+G+ P + Sbjct: 120 TAGAKDGMDVLICTGDRDSLQLVTEDVTVLYTLKGVSELHRFTPQAVEEKYGVTPTQYPD 179 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238 L AL GD+ DN+PG+PG+G KTA + +YG+L+ ++ N I K RENI + Sbjct: 180 LAALRGDTSDNMPGVPGVGPKTAQKWIAKYGSLQGVIDNMDDIGGKVGANLRENI----D 235 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRV 288 L+R + + D+ + L+ L D + + + L+F T L NR Sbjct: 236 NVVLARDITEMVRDLKLVDDLDALSPRDIDPNEALGMFEELQFGTGLRNRA 286 >gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2] gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2] Length = 873 Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 197/515 (38%), Positives = 305/515 (59%), Gaps = 31/515 (6%) Query: 465 IGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEI 520 IGHN+K+D +L Y I F D M++ +++D S + S+A+++L++ KEI Sbjct: 383 IGHNLKFDFKMLKDYKIKTPTPFADTMILGWIIDPD-SPVGLDSLAKRYLNHQNIKYKEI 441 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + ++ ID + ++ +A E++ + L+L+ +L+ K E + E ++ P+I+++ Sbjct: 442 VGKNQNFSEIDIKTAAK---YASEDAIITLKLYEVLKEKTWEEVKWDI-ENIEMPLINIL 497 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ME GI++D + L+++ E+++ L +L + IY+L+G +FN+ SPKQL ILF LK P Sbjct: 498 IDMEKEGIKVDIEYLEKLQKELTQKLENLTKEIYNLAGSEFNIKSPKQLSHILFKVLKLP 557 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK-RTQRV 699 KTKTG + T + L + +PII+ +LE+R+ K+ +TY L + K + Q+V Sbjct: 558 VKKKTKTG-YSTDEKVLNSLK-NTHPIIEKLLEYRKFDKLLTTYIIPLKEYAKKDKNQKV 615 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 +T + T TGRL+S PNLQNIP T++ IR AFI+ K IS DYSQIELR+LA Sbjct: 616 YTNFLQTGTATGRLSSKNPNLQNIPTSTEIN--IRNAFIT--DKLFISLDYSQIELRLLA 671 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H +K L + F N DIH AA+IFG E + + R AK+INF +IYG+ P +L+ Sbjct: 672 HFSKDPHLIEAFLNDKDIHLETAAKIFG---EDKAKEYRSIAKSINFGLIYGMGPKKLSE 728 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 + + EA ++I++YF F + ++IEKTK ++ GYVET+F RR +D NS + Sbjct: 729 TINVSTKEAKEFIEKYFENFSTVKDFIEKTKVETKEKGYVETLFKRRRFFD-FNSANART 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 ER A+N QGSAADI ++AMI + ++KM+LQIHDEL+FE+ ++ Sbjct: 788 LAAYEREAVNTIFQGSAADIIKKAMIDIKNKFP----SSKMILQIHDELIFEIDNKDEAY 843 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + I ME A I L VPLKV I + W E Sbjct: 844 EYKEI---MENA----IKLEVPLKVGISFAKRWGE 871 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 117/290 (40%), Positives = 163/290 (56%), Gaps = 19/290 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F++R FYA P L K G+P I GF N + L KE + D Sbjct: 4 LTIIDTFGFLFRNFYALPPLKSKK-GIPTGMITGFMNFIASL----GKEFPTDYVVFTLD 58 Query: 67 YPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 TFR EI+ DYKANRP+ PE L QLP+ + G IE+ GFE+DDIIA+ Sbjct: 59 SKEKDTFRKEIFKDYKANRPEAPEDLKVQLPIAIGLIKEMGFKMIEMPGFESDDIIASLA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A +G V I+S DKD+ QL+ ++D +K+ +I+ E +K+G+ P+ QA Sbjct: 119 KKAANDGIKVKIVSHDKDMYQLIDDDKIVIFDPIKKIEINEEKCKEKFGVHPKYFKDFQA 178 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS DNIPG+ GIG KTAA L+ EY NLENI N +IK +++ ++E E A LSR Sbjct: 179 LVGDSSDNIPGVKGIGVKTAAKLINEYKNLENIYENIDKIKGALQKK-LIEGKENAFLSR 237 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA------LEFTKLINRV 288 +LV L+TD+ E++ LE+ P + LK L+ T +I+RV Sbjct: 238 ELVTLKTDL-----FENINLEEFKYPEINPILKVADKLIDLDITSVIDRV 282 >gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] Length = 933 Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 177/538 (32%), Positives = 284/538 (52%), Gaps = 36/538 (6%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H++K L G ++ G D L +Y+ + S+D+A +A + L K L+ Sbjct: 406 KVAHDVKGPSHALLARGWTLAGVVLDTALAAYLCRPDQRSYDLADLAVRHL----KRELR 461 Query: 523 SRKSSIPIDKISDSQV----------------QEHAIENSNVILQLWLLLRPKLIVEKLL 566 + S+ D D Q+ E + + I +L +L +L Sbjct: 462 AEGSTGGADADVDEQLTLDGSDGPVGGDQQARAEEGMVRALAISELAGVLAAELEERGGT 521 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 + ++ P++ V++ E GI +D +LL + A ++ + + Y++ G + NL SP Sbjct: 522 RLLHEVELPLVAVLAAQERVGIAVDDELLADLEARFAERVAQAQAQAYEVIGTEINLGSP 581 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYA 685 KQL +LF +L P +TKTG + T A L + ++P + ++LE R S+++ T Sbjct: 582 KQLQTVLFEQLDMPKTKRTKTG-YTTDADALAALFVKTEHPFLAHLLEHRDASRLRQTV- 639 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK- 744 + L + R+HT Y TGRL+S +PNLQNIPI+T+ G++IR AF+ P Sbjct: 640 EGLRKSVAD-DGRIHTTYQQMIAATGRLSSTDPNLQNIPIRTEEGRRIREAFVVGPDAGA 698 Query: 745 ------LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 L++ADYSQIE+RI+AH++ L F + D+HR V + +FGV V+P+MR Sbjct: 699 GDGYECLLTADYSQIEMRIMAHLSGDEGLISAFTSGEDLHRFVGSRVFGVAPVDVTPEMR 758 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 K +++ + YG+S F L+ QL+I EA D + YF RF G+ +Y+ R+ G+ Sbjct: 759 AKIKAMSYGLAYGLSAFGLSNQLKISTEEAKDLMDEYFQRFGGVRDYLHGVVEEARRTGW 818 Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 ETI GRR + ++ S R + ER A+NAPIQGSAADI + AM+ + L + L + Sbjct: 819 TETIMGRRRYLPDLASDNRQRREMAERMALNAPIQGSAADIIKVAMLDLDAGLREAGLRS 878 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 ++LLQ+HDELV EV E +++ +M A +L VPL V++ V +W E Sbjct: 879 RLLLQVHDELVLEVARGEREPLEELVRATMAGAA----DLAVPLDVSVGVGRSWHEAG 932 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 113/293 (38%), Positives = 165/293 (56%), Gaps = 10/293 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAFYA P+ + G P NA+ GF +ML LL++ +HFAV F Sbjct: 32 LLLIDGHSMAYRAFYALPVQNFATTTGQPTNAVYGFTSMLINLLRDEDP----THFAVTF 87 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR E+Y DYK R K P+ Q+ LV+ A +P +EI+G+EADD+IAT T Sbjct: 88 DVSRASFRTEVYADYKGTRTKSPDEFRGQVDLVKEVLAALRVPVVEIEGYEADDVIATLT 147 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 A +GF V I S D+D QLV P T LY V E ++ E V K+G+PPE+ Sbjct: 148 EQAVAQGFDVLISSGDRDAFQLVRPEVTVLYPVKGVSELTRMTPEAVEAKYGVPPERYPD 207 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S DN+PG+PG+G KTAA + Y L+ ++ NA IK K E++ + ++ Sbjct: 208 LAALVGESSDNLPGVPGVGAKTAAKWINLYDGLDGVIANADLIKGKA-GESLRAHLDSVI 266 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 +R+L L D+ ++ + L+ + ++ + LEF L +R+ T + Sbjct: 267 RNRRLNALVHDLTLSATIPELVRRAWDREQVHTVFDGLEFRVLRDRLFATLES 319 >gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 901 Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 185/536 (34%), Positives = 291/536 (54%), Gaps = 15/536 (2%) Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS 502 TLT+ + L+ + +E K H+ K L L G+ +RG D L +Y+ G+ + Sbjct: 373 TLTEADETALRAWLGDESRPKAVHDAKGPMLALWAQGMELRGLTCDTALAAYLAMPGQRT 432 Query: 503 HDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDS--QVQEHAIENSNVILQLWLLLRPK 559 + + + +L R E ++S+ D+ D+ ++ A+ + L L P+ Sbjct: 433 FLLEDLVRAYLQRELRGEAETGGQASLFDDEDDDTARELGLRALAVRELADALEAFLEPR 492 Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 H+ ++ P++ V++++E GI D D + AE + E + GE Sbjct: 493 ----GGTHLMREVELPLVTVLAELERAGIAADGDYFSGLEAEFGAAVKQAVEAAHAAVGE 548 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 +FNL SPKQL +ILF +L P KTKTG ++ + +L R +K Sbjct: 549 QFNLGSPKQLQEILFVRLNLPKTKKTKTGYTTDADALAWLAAQTEHELPTIMLRHRDQAK 608 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI- 738 +K T + L I R+HT ++ TGRL+S +PNLQNIPI+T G++IR+ F+ Sbjct: 609 LKVT-VEGLVKEIAD-DGRIHTTFNQIVAATGRLSSEKPNLQNIPIRTVEGRRIRQGFVV 666 Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 P + L++ADYSQIELRI+AH++ L FE+ D H+ AA +F + E+V+ +MR Sbjct: 667 GPGYETLLTADYSQIELRIMAHLSGDESLIAAFESGHDFHKTTAARVFDIEPEQVTGEMR 726 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 K +N+ + YG+S F LA QL IP EA + YF F G+ +++ RQ+GY Sbjct: 727 AKIKAMNYGLAYGLSDFGLAGQLNIPVQEAKALKEEYFEEFGGVRDFLNAIVAQARQDGY 786 Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 ETI GRR + ++NS R + ER A+NAPIQGSAADI + AM++V ++++ L + Sbjct: 787 TETIMGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVQSAVKEAALGS 846 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +MLLQ+HDELVFEV E+ T +++ M A +LRVPL+V++ V W++ Sbjct: 847 RMLLQVHDELVFEVAPGELETLRELVTDRMNAA----YSLRVPLEVSVGVGRTWED 898 Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 101/303 (33%), Positives = 158/303 (52%), Gaps = 15/303 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAFYA P + G NA+ GF +ML +L++ + +H AV F Sbjct: 13 LLLLDGHSLAYRAFYALPEENFSTTTGQTTNAVFGFTSMLVNVLRDEQP----THVAVCF 68 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+E Y DYKANR P+ Q+ L+ A +P + + G+EADD+IAT Sbjct: 69 DRSEPTFRHEEYADYKANRSASPDSFRSQMSLIYEMLDALRVPHLSLAGYEADDLIATLA 128 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTV---KEEKIDIEHVIKKWGIPPEKMVC 181 A + V +++ D+D +QLV T L V + E V++K+ + P + Sbjct: 129 TQAAGQDMNVLVVTGDRDALQLVDDRVTVLMTRVGISNMTRFTPEAVLEKYELTPAQYPD 188 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 A+ GDS DN+ IPG+G KTAA ++E+G+LE ++ +K K + + ++ + Sbjct: 189 FAAIRGDSSDNLKNIPGVGEKTAAKWIREFGSLEELVNRIDEVKGKV-GDKLRDHLDQVL 247 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAANIE 300 ++R+L L DVP+ + L + + + L LEF +L +R+ T A+ E Sbjct: 248 MNRRLTQLMRDVPLEREVSALTIGQGDREEINKILDTLEFRGELRDRLFKTL----ASAE 303 Query: 301 PVV 303 P V Sbjct: 304 PEV 306 >gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] Length = 939 Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 178/537 (33%), Positives = 293/537 (54%), Gaps = 19/537 (3%) Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSH 503 LT + + L ++ + K H++K L G ++ G D L +Y+ G+ S Sbjct: 408 LTPDDEAALGEWLADPAVPKASHDVKAVLHALRGRGWTLAGLTSDTALAAYLAKPGQRSF 467 Query: 504 DIASIAQKWLSYTRKEIL------KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 D+A +A L Y R+E+ + S + ++ +D + + ++ + +L L Sbjct: 468 DLADLA---LRYLRRELAMEGAPADGQLSLLGGEEEADRAHADAEMVAASAVAELADALG 524 Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617 +L ++ + L++P+ V++ +E GI +D+ L+ + AE + + ++ Y + Sbjct: 525 AELAEKEQNGLLLELEQPLAFVLADLEAAGIAVDRANLESLEAEFAGQVAQAAQDAYAVI 584 Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQ 676 G++ NL SPKQL +LF +L P +TKTG + T A L + + ++++L R Sbjct: 585 GKEINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADALAGLFEQTGHEFLQHLLLHRD 643 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 +++K T D L I R+HT YS TGRL+S EPNLQN+PI+T G++IR A Sbjct: 644 ATRLKVTV-DGLLKSIAA-DGRIHTTYSQTIAATGRLSSTEPNLQNVPIRTAAGRRIRTA 701 Query: 737 FI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F+ +L++ADYSQIE+RI+AH+++ L + F + D H A+++FGV+ VSP Sbjct: 702 FVVGDGFSQLMTADYSQIEMRIMAHLSEDAALIEAFRSQRDFHSETASKVFGVDAADVSP 761 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 + R K +N+ + YG+S F L+ QLRI EA + YF F G+ +Y+ + R+ Sbjct: 762 EQRAKIKAMNYGLAYGLSAFGLSGQLRISTEEARGLMDDYFETFGGVRDYLRSIVDVARK 821 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 +GY T+ GRR + ++ S R + ER A+NAPIQGSAADI + AM+ VH +L+ Sbjct: 822 DGYTATMLGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLRVHAALQAEG 881 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 L ++MLLQ+HDELV EV + E ++ M A L VPL+V++ +W Sbjct: 882 LRSRMLLQVHDELVLEVADGERDAVDALVRREMAAAH----ELSVPLEVSVGYGASW 934 Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 108/294 (36%), Positives = 151/294 (51%), Gaps = 16/294 (5%) Query: 6 HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L L+DG S YRAF+A P + R G NA+ GF +ML LL++ + +H AV Sbjct: 35 RLLLLDGHSLAYRAFFALPAENFRTGTGQTTNAVYGFTSMLINLLRDEQP----THLAVA 90 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y DYKANR P+ Q+ L++ A IP ++G+EADDIIAT Sbjct: 91 FDVSRRTFRSERYADYKANRTTTPDDFRGQVDLIKEVLGALNIPVFAVEGYEADDIIATL 150 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMV 180 T AE +GF V I + D+D QLV+ T LY +ID V ++G+ PE+ Sbjct: 151 TTQAEADGFQVLITTGDRDAFQLVTENVTVLYPKRGVSDLGRIDPAEVDNRYGLTPEQYP 210 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYA 237 AL GD DN+P IPG+G KTAA ++E+G+L + +K K R N+ Sbjct: 211 DFAALRGDPSDNLPSIPGVGEKTAAKWVREFGSLAELTDRVDEVKGKAGDALRANL---- 266 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 L+R+L L DV + L + + + LEF L R+ +T Sbjct: 267 ANVLLNRQLTELVRDVTLDASPADLEVRPWDRDAVHRLFDELEFRVLRERLFST 320 >gi|224372423|ref|YP_002606795.1| DNA polymerase I [Nautilia profundicola AmH] gi|223590027|gb|ACM93763.1| DNA polymerase I [Nautilia profundicola AmH] Length = 872 Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 189/515 (36%), Positives = 297/515 (57%), Gaps = 31/515 (6%) Query: 465 IGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEI 520 IGHN+K+D +L +YG+ + D M+++++LD S + S+A+++L + KE+ Sbjct: 382 IGHNLKFDFKMLKKYGLEIPTPHADTMILAWILDPD-SPVGLDSVAKRYLDHQNIKFKEV 440 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 + RK+ +D + ++A E++ + L+L+ +L+ KL E + E ++ P I+++ Sbjct: 441 IGKRKNFSEVDI---QEAAKYAAEDALISLKLYEILKEKLWEEVKWDI-ENIEMPFINLL 496 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 +E GI++D + ++++ E ++ L +L + IY +G +FN+ S KQL ILF LK P Sbjct: 497 IDIESQGIKLDIEYMQKLQTETTEKLENLTQEIYRYAGSEFNIKSTKQLAHILFEVLKLP 556 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR-TQRV 699 KTKTG + T + L + G +PII+ +LE+R+L K+ STY L + K ++ Sbjct: 557 VKRKTKTG-YSTDEKVLTSLK-GTHPIIEKLLEYRKLDKLLSTYIIPLQEYAKKDPNHKI 614 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 +T + T TGRL+S PNLQNIP TD+ IR AF++ K+ +S DYSQIELR+LA Sbjct: 615 YTNFLQTGTATGRLSSKNPNLQNIPTSTDIN--IRDAFVA--EKEFVSLDYSQIELRLLA 670 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H +K L F DIH A +IFG N K + R AK+INF +IYG+ P +L+ Sbjct: 671 HFSKDEHLINAFLEDKDIHLETAVKIFGENRAK---EYRPVAKSINFGLIYGMGPKKLSE 727 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 + + EA ++I++YF FP + ++E TK R+ GYVET+ RR +D + ++ Sbjct: 728 TINVSTKEAKEFIEKYFASFPTVKTFLENTKIEAREKGYVETLLKRRRFFDFAAANARTL 787 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 N ER A+N QGSAADI ++AMI + + KMLLQIHDEL+FE+ + Sbjct: 788 ANF-EREAVNTIFQGSAADIIKKAMIEIKQRFP----KAKMLLQIHDELIFEIDSRDEAY 842 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + I+ ++ K L VPLKV I W E Sbjct: 843 EYKKIMQNVFK-------LEVPLKVGISFGKRWGE 870 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 126/384 (32%), Positives = 196/384 (51%), Gaps = 42/384 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F++R FYA P L K G P I GF N + L ++ + I + Sbjct: 3 LTIIDTFGFLFRNFYALPPLKSKK-GFPTGMITGFLNFVASLGRDFETDYIV---FTLDS 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR EI+ DYKANRP+ PE L QLP+ G +EI G+E+DDIIA+ Sbjct: 59 KEKDTFRKEIFKDYKANRPEAPEDLKTQLPVAIELINEMGFKMLEIPGYESDDIIASLAK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 +A +G V I+S DKD+ QL+ ++D +K+ +I+ I+K+G+ P+ + QAL Sbjct: 119 LAASQGIKVKIVSHDKDMYQLIDDDKIVIFDPIKKVEINEAKCIEKFGVHPKDFINFQAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ G+G KTAA L+ +Y LEN+ + IK +++ +L E A LSR+ Sbjct: 179 VGDSSDNIPGVKGVGVKTAAKLINQYKTLENLYDHIDEIKGALQKK-LLADKENAFLSRE 237 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKA------LEFTKLINR-------VATTY 292 LV L+TD+ +++ LE+ P + LK L+ T ++ R V T Sbjct: 238 LVTLKTDL-----FDNINLEEFKYPEINPILKVADKLIDLDITSILERVKKDGLYVKTKM 292 Query: 293 DCDAANIEPVVLD--------INTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSK---- 340 + + V+++ I+ E+K +A +TE D FS ++ Sbjct: 293 PDNQVKFDAVLIENEKELFEIIDKIEDKIVAFDTETDSLENPNIVGFSFAYEKNKAYYVP 352 Query: 341 IN------SEQTPQKLFLERLQKL 358 IN ++Q P+K L+ +QK+ Sbjct: 353 INHFYLGVTDQIPEKTALKAIQKI 376 >gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950] Length = 908 Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 177/513 (34%), Positives = 293/513 (57%), Gaps = 25/513 (4%) Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----- 521 KL +H ++ RG+ D L +Y++ G+ S + ++ L Y R+E+ Sbjct: 403 KLAMHD--LAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLS---LRYLRRELRAENPE 457 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + S + +D Q + + + +L L L +L + ++ P+ V++ Sbjct: 458 QQQLSLLDDTDGTDDQAVQTLLLRAVAVLDLADALDEELARINSTSLLSGMELPVQRVLA 517 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME GI +D +LL ++ ++ + + E Y + G++ NL SPKQL +LF +L+ P Sbjct: 518 GMENAGIAVDLELLTELQSDFAHLIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELEMPK 577 Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 +TKTG + T A L+ + + +P ++++L R +++K T D L N + R+H Sbjct: 578 TKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAS-DGRIH 634 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759 T ++ TGRL+S EPNLQNIPI+T+ G++IR AF+ +L++ADYSQIE+RI+A Sbjct: 635 TTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYSELMTADYSQIEMRIMA 694 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H++K L + F D+H VA+ FGV IE+V+ ++RR K +++ + YG+S + L+ Sbjct: 695 HLSKDEGLIEAFNTGEDLHSFVASRAFGVPIEEVTAELRRRVKAMSYGLAYGLSAYGLSA 754 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL+I EA D +++YF RF G+ +Y+ R++GY T+FGRR + E++S + Sbjct: 755 QLKISTEEAKDQMEQYFARFGGVRDYLMAVVEQARKDGYTSTVFGRRRYLPELDSSNRQV 814 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ERAA+NAPIQGSAADI + AMI K+++D L++++LLQ+HDEL+FEV E Sbjct: 815 REAAERAALNAPIQGSAADIIKVAMIETDKAIKDAGLSSRILLQVHDELLFEVAAGEREQ 874 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + M A L VPL+V++ +W Sbjct: 875 LEALARDKMGGAY----PLDVPLEVSVGYGRSW 903 Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 166/307 (54%), Gaps = 14/307 (4%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 Q L L+DG+S +RAFYA P + K GL NA+ GF ML LL ++ +H Sbjct: 17 QTRPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTH 72 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A FD TFR+E YP+YKANR P+ Q+ + + A GI + GFEADD+ Sbjct: 73 IAAAFDVSRQTFRSERYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDL 132 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPP 176 IAT AE EG+ V +++ D+D +QLVS T LY V E + + V++K+G+ P Sbjct: 133 IATLATQAENEGYRVLVVTGDRDSLQLVSENVTVLYPRKGVSELTRFTPDAVVEKYGLTP 192 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + AL GD DN+PGIPG+G KTA+ + EYG+L+ ++ N ++ K + + E+ Sbjct: 193 TQYPDFAALRGDPSDNLPGIPGVGEKTASKWIGEYGSLQALVDNVDSVRGKV-GDALREH 251 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + +R+L L DVP+ + L L+ + ++ LEF L +R+ T Sbjct: 252 LASVIRNRELTDLVKDVPLAQTPDTLRLQPWDRDQIHRLFDDLEFRVLRDRLFETL---- 307 Query: 297 ANIEPVV 303 A +EP V Sbjct: 308 AAVEPEV 314 >gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22] gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22] Length = 908 Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 173/514 (33%), Positives = 283/514 (55%), Gaps = 14/514 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K V +G ++ G D L +Y++ GR S D+ ++ L Y +E+ Sbjct: 401 KVFHNAKSAMRVFAEHGWTVEGVGMDTALAAYLVKPGRRSFDLDALT---LEYLGRELAP 457 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + + +D + A+ + IL L +L + ++ P +++ Sbjct: 458 AATADGQLAFGADEGAEADALMVQARAILDLGAAFGERLEEVGAAGLLRDVELPTSALLA 517 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +ME GI D+ L+ + + + + + +G +FNL SPKQL ++LF +L P Sbjct: 518 RMERHGIAADRPHLEAMEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELGLPK 577 Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 +TKTG + T A L + DN + +L R+ +K++ T + L I R+H Sbjct: 578 TKRTKTG-YTTDADALAWLAGQTDNELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIH 634 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759 T +S TGRL+S +PNLQN+P++TD G+ IRR F+ + L++ADYSQIELR++A Sbjct: 635 TSFSQTVAATGRLSSTDPNLQNVPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMA 694 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+++ L + F + D+H AA++FGV V +MRR K +++ + YG+S F L+ Sbjct: 695 HLSEDEGLIEAFTSGEDLHTTAAAQVFGVEQSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ 754 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL I EA I YF RF G+ +Y+ + + R+ GY T+FGRR + ++NS Sbjct: 755 QLNIEAGEARALIDAYFERFGGVRDYLRRVVDEARETGYTATLFGRRRYLPDLNSDNRQR 814 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER A+NAPIQG+AADI + AM++V ++L++ LA++MLLQ+HDE+V E+ E Sbjct: 815 REAAERMALNAPIQGTAADIVKIAMLNVGRALDEAGLASRMLLQVHDEIVLEIAPGERDR 874 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 Q++ H M A ++LR PL V++ +W+ Sbjct: 875 TEQLLRHEMADA----VHLRAPLDVSVGHGPDWE 904 Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 104/255 (40%), Positives = 147/255 (57%), Gaps = 12/255 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NAI GF +ML N+ ++ +HFAV F Sbjct: 20 LMLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDEAPTHFAVAF 75 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R+E + +YKANR K P+ Q+ L+ A + GFEADDIIAT Sbjct: 76 DVSRKTWRSEEFTEYKANRSKTPDEFKGQVELLGELLDAMHAVRFAVDGFEADDIIATLA 135 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EGF V I++ D+D QLVS TT LY T V E + E V +K+G+ P + Sbjct: 136 TQAEAEGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPD 195 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ +++ +K K +N+ ++ E + Sbjct: 196 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFADLVERVEEVKGKA-GQNLRDHLEAVK 254 Query: 242 LSRKLV-MLRT-DVP 254 L+R+L M+RT D+P Sbjct: 255 LNRRLTEMVRTVDLP 269 >gi|88856208|ref|ZP_01130868.1| DNA polymerase I [marine actinobacterium PHSC20C1] gi|88814527|gb|EAR24389.1| DNA polymerase I [marine actinobacterium PHSC20C1] Length = 879 Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 192/583 (32%), Positives = 299/583 (51%), Gaps = 37/583 (6%) Query: 397 DTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKF 456 DT A S P+ + ++ +D T + T V + D LT+ + S KF Sbjct: 322 DTNSAHGSAPLGLTVAIVDGTV-TGLGLATATETAFVPWAADRLDYVALTEWLASDAPKF 380 Query: 457 FENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515 H+ K + G+ + G D ML +VL G ++ + +L Sbjct: 381 M---------HSSKAQLKIASANGLDIAGIAFDTMLAGWVLKPGGKPEELEAQVYNYLGE 431 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL----LHVYER 571 T ID+ +Q+ S L +++ + + +L L V Sbjct: 432 T-------------IDQGDPNQLVPETEALSPATLSWYVVRVAEYLAGRLDEGSLGVLTD 478 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P++ V ++ME TGI ++Q LL +SA +++ + N +++ G + NL SPKQL + Sbjct: 479 IEMPLVPVFARMERTGIAVNQQLLLDLSASLTETAQEVARNAFEVIGREINLGSPKQLQE 538 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIKSTYADSLPN 690 +LFT+L+ P KTG + T A L + +P + +L+ R +K+ + Sbjct: 539 VLFTQLEMPKTRANKTG-YSTDAASLADLQEQAPHPFLNLLLQHRDATKLVQIIT-GIEK 596 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISAD 749 I+ + RVHT Y A + TGR+AS +PNLQN+PIKT G++IR AF L++AD Sbjct: 597 AIDD-SGRVHTTYEQAGSSTGRIASNDPNLQNVPIKTATGRQIRSAFEAGAGFDTLLTAD 655 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIE+RI+AH++ L Q F D+HR V + IFGV +V+ +MR K +++ + Sbjct: 656 YSQIEMRIMAHLSGDEGLIQAFNEGEDLHRFVGSRIFGVEPAEVTAEMRTKVKAMSYGLA 715 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YG+S F L+ QLRI SEA + YF RF + +Y+ R +GY TIFGRR + Sbjct: 716 YGLSAFGLSKQLRIETSEAKALMTDYFARFGAVRDYLRNVVEQARTDGYTTTIFGRRRPF 775 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 ++NS +R+ ER A+N+PIQGSAADI + AM+ + + L ++MLLQ+HDELV Sbjct: 776 GDLNSKNRVLRDNAERQALNSPIQGSAADILKLAMLRIDSDMRVEGLKSRMLLQVHDELV 835 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 FE+ E+ + I+ M A +L VPL V I +NW Sbjct: 836 FEIAGGELERMTTIVHERMSGAA----SLSVPLDVQIGTGHNW 874 Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 155/287 (54%), Gaps = 11/287 (3%) Query: 8 FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DG S +RAFYA P+ S + DG NAI GF +ML LLQN + +H AV FD Sbjct: 1 MIIDGHSLAFRAFYALPVDSFQNRDGQHTNAIHGFLSMLISLLQNEKP----THLAVAFD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +FR YP+YK R + P + Q+PL+ A +A G+ + + +EADDI+AT + Sbjct: 57 ISRYSFRTREYPEYKGTRGETPPEFVGQIPLLEEALKAMGVQTLSKEDYEADDILATLAH 116 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 GF V ++S D+D +Q+V+ T LY + ++ D + V +K+G+ P + Sbjct: 117 EGSHNGFRVLVVSGDRDAIQMVNDDVTLLYPNARGVSELKRYDRDAVFEKYGVEPHQYPD 176 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 + AL G++ DN+ G+ +G KTA + YG+L+ IL +A IK +N+ + + A Sbjct: 177 VAALVGETSDNLIGVDKVGEKTAVKWINLYGSLDEILAHADEIK-GVVGQNLRDQMDRAV 235 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +RKL L TDV + + + L + + L+F L+ RV Sbjct: 236 RNRKLNHLLTDVELPVTVTALDRRPIDEAAVREVFDRLQFKTLLQRV 282 >gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1] gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1] Length = 905 Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 200/611 (32%), Positives = 323/611 (52%), Gaps = 32/611 (5%) Query: 369 TKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIF 428 T I + +++Q+ +Q L+ +F T +D K + + S DD +F V Sbjct: 316 TLITDNEELQKVLQALKPETIVAFDTETTGLDYEKDKLVGFSFSF---NDDEAFYVPFAH 372 Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY--GISMRGF 486 L V Q S L +KK F ++ +GHNIK+D + R+ + + Sbjct: 373 FYLGV-PDQISEKDAALA------MKKIFNSK---VVGHNIKFDLHFVSRFLNDDMLNIY 422 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 D M+++++++ S+ + ++ K L +T + K + ++A E++ Sbjct: 423 SDSMILAWLINP-ESALGLDKLSDKLLDHTMLGFKDTVKKGETFASVELEDASKYAAEDA 481 Query: 547 NVILQLWLLLRPKLIVEKLLHVYER---LDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 + L+L+ L KL ++ H+ + ++ P I + ME GI++D + L+ E+ Sbjct: 482 YITLKLFNLFNEKLKLQDATHLIDESQNVEVPFITTLLGMEKDGIRVDAEFLEVFLVEVK 541 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 + LL+L + IY+ +G +FN++S KQLG ILF L P G KTKTG + T L + Sbjct: 542 ETLLNLTKTIYEQAGTEFNINSTKQLGVILFEHLGLPVGKKTKTG-YSTDENVLSSLK-D 599 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 + II ++LE+R++ K+ STY + L + + R+HT + T TGRL+S PNLQN Sbjct: 600 KHEIISSLLEYREIYKLYSTYIEPLLKLSLEDKEGRIHTSFVQTGTATGRLSSKNPNLQN 659 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP +T G KIR AF++P KKLI DYSQIELR+LAH ++ L F + DIH A Sbjct: 660 IPARTSQGLKIREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAVLVDAFRANKDIHLQTA 719 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +FG E+ +P R AKT+NF ++YG+ +L+ L I EA + I++YF FP + Sbjct: 720 IALFG---EEEAPSKRAVAKTVNFGLLYGMGQKKLSETLGITTKEAKEIIEKYFESFPTV 776 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYD-EINSPKSSIRNINERAAINAPIQGSAADITR 901 Y + ++ GYVET+ RR ++D E SP R +R ++N+ QGSA+D+ + Sbjct: 777 KTYFRSIVDNSKEMGYVETLLKRRRYFDYETASP--MFRAAYDRESVNSVFQGSASDLIK 834 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 +M + +++ KL KMLLQIHDEL+FEV +E ME L +P Sbjct: 835 LSMNKIATVIKEEKLNAKMLLQIHDELIFEVDADEAEMLGNRFKEIMENIY----ELNIP 890 Query: 962 LKVNIKVSNNW 972 L+ ++ + +NW Sbjct: 891 LEASMNIGDNW 901 Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 5/246 (2%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D F +R+FYA P + DG P + GF N + L +K+ + + D Sbjct: 7 VIDTFGFFFRSFYALPQHLKNKDGFPTGLLTGFTNFISTL----QKQHDSDYLIFAIDTK 62 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFRNE+ P+YKANR PE L QLP+ G + GFEADD+IAT A Sbjct: 63 GNTFRNEVDPNYKANRTAPPEELTMQLPIAIEWIDKMGYKTLGQVGFEADDLIATVVKHA 122 Query: 129 EKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 +++G+ V ++S DKDL QL+ + D +K + +D + K+G+ P++ + Q++ G Sbjct: 123 KEKGYNVRVVSHDKDLYQLIDDGRVVVVDAIKRKSMDEDACFLKYGVTPKQFIDYQSILG 182 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247 DS DN+PG+ GIG A LL +YG+L+NI N IK ++ + + + A +S+ LV Sbjct: 183 DSADNVPGVKGIGKVGAEKLLVQYGDLDNIYANIDEIKPPGIQKKLRDSQDEAYMSKVLV 242 Query: 248 MLRTDV 253 LR D+ Sbjct: 243 TLRDDI 248 >gi|163841042|ref|YP_001625447.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] gi|162954518|gb|ABY24033.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] Length = 912 Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 191/608 (31%), Positives = 313/608 (51%), Gaps = 36/608 (5%) Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432 + +I W LE G+A+ + ++P+ + + + + S FI L Sbjct: 328 SAAEISAW---LEAAGTATIGLALSGQTLPLAEPVGMDVHGIGLSSEES----AAFIPL- 379 Query: 433 VHTSQDSTGKNTLTKEIL-SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIM 490 TG + +++L S+LK K H++K L G+ + G +D Sbjct: 380 -------TGLDEAAEQVLASWLKGSAP-----KAVHDLKSALKALSGRGLDLDGVVDDTS 427 Query: 491 LMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVIL 550 + +Y++ R ++D+A ++ L + + D QE A+ + Sbjct: 428 ISAYLIQPERRNYDLADLSLYHLETPMTVSASKDAGQLDLGLEGDDGAQE-AVLRAFATQ 486 Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610 +L P L+ + L+ P+ V+S ME+ G+ + ++ L + A+ K + + + Sbjct: 487 KLSSFFAPILLERNAEQLLTGLELPLARVLSGMELAGVAVSKETLDTLMADFGKTIETAQ 546 Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD-NPIIK 669 Y + G + NL SPKQL +LF +L P K KTG + T A+ L + +P + Sbjct: 547 TEAYAIIGHEVNLGSPKQLQTVLFDELGMPKTKKIKTG-FSTDAEALADLTTKHPHPFLL 605 Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729 + +R +K++ T + L I T RVHT Y+ TGRL+S PNLQNIPI+++ Sbjct: 606 QLQAYRDATKLRQT-VEGLIKSIGSDT-RVHTTYAQNVAATGRLSSNNPNLQNIPIRSEE 663 Query: 730 GQKIRRAFI-----SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 G++IR AF+ + + L++ADYSQIE+RI+AH++ L Q F++ D+HR V + Sbjct: 664 GRRIRGAFVVGQKSTKSYETLLTADYSQIEMRIMAHLSGDEALIQAFKDGEDLHRFVGSH 723 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 IF V ++V+ MR K +++ ++YG+S F L+ QL I EA +K YF RF + + Sbjct: 724 IFNVEPQEVTSAMRSKVKAMSYGLVYGLSSFGLSKQLNISVDEARTLMKDYFDRFGAVRD 783 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 Y+ R +G+ ETI RR + E+ S +R ++ERAA+NAPIQGSAADI +RAM Sbjct: 784 YLRGVVEQARLDGFTETIESRRRYLPELTSDNRQLREMSERAALNAPIQGSAADIIKRAM 843 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 + V + + L ++MLLQ+HDELVFEV E E+ +++ M A NL VPL V Sbjct: 844 LGVDAGIAEAGLESRMLLQVHDELVFEVAEGELDQVQALVIAQMAVAA----NLTVPLDV 899 Query: 965 NIKVSNNW 972 + + +W Sbjct: 900 QVGIGKSW 907 Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 101/296 (34%), Positives = 156/296 (52%), Gaps = 10/296 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P + D G NA+ GF +ML +++ + SH AV F Sbjct: 21 LLVLDGHSMAFRAFYALPPETFVTDTGQHTNAVHGFTSMLLTMIRQQKP----SHVAVAF 76 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+ Y +YKA R K PE Q+ L+ +A +P I I GFEADDIIAT Sbjct: 77 DLDTPTFRSVEYTEYKAGRSKTPEEFYGQIDLIIKVMEAMNVPTISIDGFEADDIIATVA 136 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTT-CLYDTVKEEKI---DIEHVIKKWGIPPEKMVC 181 +E G+ ++S D+D QL++ T LY I D + K+ + P++ Sbjct: 137 SQSEAAGWQTLVVSGDRDAFQLITDNTFVLYPKKGISDIPPMDAAAIEAKYFVRPDQYSD 196 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G++ DN+PG+PG+G KTAA + +Y L IL N I K +++ E+ ++ + Sbjct: 197 LAALVGETADNLPGVPGVGPKTAAKWINQYDGLAGILENIYAIG-GKVGDSLREHVDSVK 255 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 +R+L L D+ + + LE + L+ + ++ L+F L R+ + D A Sbjct: 256 RNRRLNHLLRDLDLPVTLEQMELQHPDREKIEELFDELQFNTLRKRLFDLFGEDEA 311 >gi|320531283|ref|ZP_08032259.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str. F0337] gi|320136486|gb|EFW28458.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str. F0337] Length = 912 Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 183/540 (33%), Positives = 289/540 (53%), Gaps = 23/540 (4%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIA 509 + L +F + K+ + K L G+++ G D L Y+ + S+D+ ++ Sbjct: 377 AVLARFLSDTDRPKLVADAKGSWHALSARGLTLDGVIADPSLAGYLCRPEQRSYDVETLT 436 Query: 510 QKWLSYTRKEILKS----------RKSSIPIDKI-SDSQVQEH--AIENSNVILQLWLLL 556 Q+WL + +S +S+ ++ + SD+ H + + V+L L ++L Sbjct: 437 QRWLGIDLAAVDESGAQANDGPGESQSAFDLEALTSDAVPATHMASARRAAVLLPLQVVL 496 Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 ++ + ++ L+ P+ ++ ME GI +D +L E+ + E Y Sbjct: 497 DEQMAARDAVGLFTDLEMPVAATLTVMEDAGIAVDDAVLAARETELDARVTHAAEGAYAA 556 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWR 675 +G + NLSSPKQL +LF +LK P KTKTG + T A L + +P ++++LE R Sbjct: 557 AGRELNLSSPKQLQAVLFDELKMPKTRKTKTG-YTTDADALAGLYAKTSHPFLEHLLEHR 615 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 K++ T + L I R+HT + TGRL+S +PNLQNIP + + G +IR Sbjct: 616 DAIKLRQTV-EGLRKAIQA-DGRIHTTFQQTIAATGRLSSTDPNLQNIPARHEEGMRIRE 673 Query: 736 AF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794 AF + L++ADYSQIE+RI+AH++ L + F + D+HR VAA + G+ + V+ Sbjct: 674 AFTVGEGYDCLMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYVAALVHGIEVGDVT 733 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 Q R H K +++ + YG+S F LA QL I +EAAD YF RF +H+Y+E R Sbjct: 734 AQQRSHVKAMSYGLAYGLSTFGLARQLGIDNAEAADLRNAYFARFGKVHDYLESVVEQAR 793 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 ++GY ET+FGRR + ++ S R + ERAA+NAPIQGSAADI ++AMI V +L + Sbjct: 794 RDGYTETMFGRRRYLPDLTSDNRQRREMAERAALNAPIQGSAADIVKKAMIDVDGALTEQ 853 Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L++++LLQIHDEL+ EV E ++ M A L VPL V + W+E Sbjct: 854 GLSSRILLQIHDELLIEVAPGEAAAVESLLKEQMGGAA----ELSVPLDVAVGRGQTWRE 909 Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 95/278 (34%), Positives = 147/278 (52%), Gaps = 11/278 (3%) Query: 17 YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75 +RAFYA P+ + G NA+ GF +M LL N + +H AV FD P TFR E Sbjct: 3 FRAFYALPVDNFTTSTGQSTNAVHGFVSMFLSLLDNEQP----THMAVAFDLPGGTFRTE 58 Query: 76 IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135 Y +YK R + P+ L Q+ L++ +A G+ + G+EADDI+AT A+ EG V Sbjct: 59 EYAEYKGTRDETPQPFLGQVELIQEVLEAMGVKTLTAPGYEADDILATLAVSAQAEGMEV 118 Query: 136 TIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191 I S D+D Q V+ + VK ++ V +++G+ PE+ L AL G++ D Sbjct: 119 LICSGDRDSFQTVTEQCTVLYPVKGVSTLRRMTPHEVEERYGVTPERYPHLAALVGETSD 178 Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251 N+PG+PG+G KTAA L Y L+ ++ +A +IK K +++ ++ + +R+L L T Sbjct: 179 NLPGVPGVGPKTAAKWLNLYDGLDGVIAHADQIKGKA-GQSLRDHLDDVVRNRRLNRLLT 237 Query: 252 DVPI-TIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 D+ + +P L L + L + LEF L R Sbjct: 238 DLDLGVVPRTDLRLPGADRAGLARVFETLEFRTLHQRA 275 >gi|327399380|ref|YP_004340249.1| DNA polymerase I [Hippea maritima DSM 10411] gi|327182009|gb|AEA34190.1| DNA polymerase I [Hippea maritima DSM 10411] Length = 801 Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 168/428 (39%), Positives = 259/428 (60%), Gaps = 10/428 (2%) Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 IL+ + LR + L + +++ P+ +V+ ME GI+ID + L E++ L Sbjct: 381 AILESYPFLREYIEGNNLNFLLSQVETPLSEVLVSMEKRGIKIDSEYLTSFENELANKLY 440 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 + E+ I+ L+GE+FN++S K+L ILF KL KTKTG + T ++ L Q+ I Sbjct: 441 ATEKQIHALAGEEFNINSTKELQRILFEKLGIKPIKKTKTG-YSTDSESL-QMLAQKYEI 498 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 + I+ +R +SK+ STY + ++K + R+HT ++ T TGRL+S PNLQN+P Sbjct: 499 AQLIITYRAISKVISTYIRPFLDKMDK-SNRLHTTFNQTLTSTGRLSSSNPNLQNLPAGD 557 Query: 728 D-LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 D L IR++ ++P KLI +DYSQIELR+LA ++K L ++F+N+ DIH A +IF Sbjct: 558 DELHSGIRKSVVAPKGYKLICSDYSQIELRVLAQMSKDKTLIEIFKNNEDIHTQTAVKIF 617 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 GV+ V +RR AKTINF IIYG+ L+ L I + +A +I++YF RF G+ YI Sbjct: 618 GVHPSMVDHHLRRMAKTINFGIIYGMGYVSLSKTLNISKDKARQFIEKYFERFAGVKSYI 677 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 E T +NG+VET FGRR ++ INS + +RAA+NA IQG+AADI + AM+ Sbjct: 678 ENTTEKATKNGFVETYFGRRRYFFNINSNNKRLAQFEKRAAVNATIQGTAADIIKIAMVK 737 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 +++ L++ L ++LQ+HDEL+ E E+ + I+ +ME A + +P+K N Sbjct: 738 LYEKLKN--LDAHIVLQVHDELLVEAKEDIAENVAGIVKDTMENA----VKFDIPIKTNT 791 Query: 967 KVSNNWQE 974 K++NNW E Sbjct: 792 KIANNWYE 799 Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 117/258 (45%), Positives = 154/258 (59%), Gaps = 13/258 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++L+DGSSF+YR F+A LS K G+P I GF +L +L + ++ A+ FD Sbjct: 5 VYLIDGSSFLYRFFFAIRGLSYK--GMPTGTIFGFAKLLLEL-----DAANPTYIAIFFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR +I YK NRPK+P+ L Q+ + +AFGIP IE+ GFEADD+IATY Sbjct: 58 TKAKTFREDILESYKKNRPKMPDELSIQIEPTKQLIKAFGIPIIELDGFEADDLIATY-- 115 Query: 127 IAEK--EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 AEK F V II++DKDL QLV+ +YD K+ D E V KK G+ PE++ A Sbjct: 116 -AEKLKNDFEVIIIASDKDLFQLVNSNVKIYDPTKKVFYDREGVFKKLGVYPEQVADFLA 174 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDSIDNIPG+ IG KTAA LL +Y N+E IL N +K K +E I + + L R Sbjct: 175 LVGDSIDNIPGVKSIGPKTAASLLAQYKNIEGILQNLDNLKP-KIKEAIEKEKDNLELYR 233 Query: 245 KLVMLRTDVPITIPLEHL 262 KL + PI I LE + Sbjct: 234 KLTITDKKAPIKIELEAM 251 >gi|261878884|ref|ZP_06005311.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] gi|270334524|gb|EFA45310.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] Length = 661 Score = 297 bits (761), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 221/728 (30%), Positives = 368/728 (50%), Gaps = 91/728 (12%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + I+R++YA P ++ K GL +AI GFCN L ++++ +H V Sbjct: 4 LFLLDAYAIIFRSYYAFIKRPTINSK--GLNTSAILGFCNTLNEIIEKEN----PTHIGV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FDY TFR+E +P YKA R PE + +P ++ +A IP +++ GFEADD+I T Sbjct: 58 AFDY-GKTFRHEAFPPYKAQREATPEDIKLSVPHIQDILKAMHIPILQVNGFEADDVIGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL--------YDTVKEEKIDIEHVIKKWGIP 175 A ++G +++ DKD QL+ + YD + E++I K+GI Sbjct: 117 LATQAAEKGIETYMLTPDKDYGQLIRQHVYMFRPRHGGGYDKIGEKEIQ-----AKYGIA 171 Query: 176 PEKMVC-LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 V L AL GDS DN PG PG+G KTA L+ E+G EN++ N+ ++K K RE + Sbjct: 172 SAAQVIDLLALMGDSSDNYPGCPGVGEKTAVKLIHEFGTCENLIENSDQLK-GKMREKVE 230 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 + ++S+ L +RTDVPI + L+ L + + L LEF +L + Sbjct: 231 NAVDDIKMSKFLATIRTDVPIELNLDELKMTSPDEAELHKIFTELEFRRLAKKFL----- 285 Query: 295 DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLER 354 NKG E +I D Q + + +K SE P+ E Sbjct: 286 ----------------NKG---EEKITSDNL----QLNLFEENPTKTTSE--PKFSTFES 320 Query: 355 LQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTL 414 L+ S + Y I N ++ ++ L T S T + ++ + ++ S Sbjct: 321 LKTTSHH------YKLIDNQEEARKLCDFLRTNKILSLDTETTSTSPMEAELVGLSFSV- 373 Query: 415 DQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYL---KKFFENEHFLKIGHNIKY 471 K+ +F V +D +E L Y+ K +E+ LK+G NIKY Sbjct: 374 --KEKEAF---------YVAIPKDR-------EEALQYVNIFKPLYEDPEILKVGQNIKY 415 Query: 472 DKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KS 526 D +VL YG+ ++G D ML Y++ H++ +A+ L Y +E++ + K Sbjct: 416 DYVVLRNYGVDIQGKMFDTMLAHYLIQP-ELRHNMDYMAETLLHYQTMHIEELIGPKGKG 474 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 + +S ++ E+A E++++ L+L +L P+L ++ ++ P++ V++ ME+ Sbjct: 475 QKNMRDLSPEEIYEYAAEDADITLRLKNVLEPQLKEVGAKSLFWDIEMPLVKVLADMELN 534 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-PSGAKT 645 G+ +D + L ++ ++ + E + ++L+GE+FN+SSPKQ+G+ILF K+K KT Sbjct: 535 GVLLDTESLNEIERTFTERMQQYERHAFELAGEEFNISSPKQVGEILFGKMKIVDKPKKT 594 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 KTGQ+ T+ + L Q+ PI+++IL +R + K+ TY ++LP IN RT +HT ++ Sbjct: 595 KTGQFVTSEEVLLQLK-DKAPIVEDILNYRGMKKLLGTYVEALPKLINPRTGHIHTSFNQ 653 Query: 706 ASTMTGRL 713 A T TGRL Sbjct: 654 AVTATGRL 661 >gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99] gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99] Length = 899 Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 180/533 (33%), Positives = 300/533 (56%), Gaps = 11/533 (2%) Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSS 502 TLT + + L ++ + K H K L G ++ G D L +Y++ G+ S Sbjct: 369 TLTPDDDAALGEWLADPAKPKALHEAKLAIHDLRGRGWTLNGVTSDTALAAYLVRPGQRS 428 Query: 503 HDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561 + ++ ++L R E + ++ S+ D +D + AI + ++ L L +L Sbjct: 429 FTLDDLSLRYLRRELRAETPEQQQLSLLDDDDTDVAAAQTAILRARAVIDLADALDAELD 488 Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 + ++ P+ ++++ME GI +D +L + + + E Y + G++ Sbjct: 489 RIDSTGLLTDMELPVQHLLAEMETAGIAVDLTMLGGLQRHFADQIRDAAEAAYAVIGKQI 548 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKI 680 NL SPKQL +LF +L+ P +TKTG + T A L+ + + +P ++++L R ++++ Sbjct: 549 NLGSPKQLQVVLFDELRMPKTKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDVTRL 607 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739 K T D L N + R+HT ++ TGRL+S EPNLQNIPI+TD G++IR AF+ Sbjct: 608 KVT-VDGLLNSVAD-DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRQIRDAFVVG 665 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 +L++ADYSQIE+RI+AH+++ L + F D+H VA+ FGV I++V+ ++RR Sbjct: 666 DGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRR 725 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 K +++ + YG+S + L++QL+I +A + +YF RF G+ +Y+ R++GY Sbjct: 726 RVKAMSYGLAYGLSAYGLSSQLKISTEDAKVQMDQYFSRFGGVRDYLMAVVEQARKDGYT 785 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 T+ GRR H E++S +R ERAA+NAPIQGSAADI + AMI V K+L++H L ++ Sbjct: 786 STVLGRRRHLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIEVDKALKEHALKSR 845 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 MLLQ+HDEL+FEV E ++ M A L VPL+V++ +W Sbjct: 846 MLLQVHDELLFEVAAGEREQIEALVRDKMGSAY----PLDVPLEVSVGFGRSW 894 Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 114/302 (37%), Positives = 162/302 (53%), Gaps = 14/302 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG+S +RAFYA P + K GL NA+ GF ML LL ++ +H A F Sbjct: 13 LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 68 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+E YP+YKANR P+ Q+ + + A GI + GFEADDIIAT Sbjct: 69 DVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAAPGFEADDIIATLA 128 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EG+ V +++ D+D +QLVS T LY V E + E V++K+G+ P + Sbjct: 129 TQAEGEGYRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPVQYPD 188 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTA+ + EYG+L+ ++ ++ K A R Sbjct: 189 FAALRGDPSDNLPGIPGVGEKTASKWIVEYGSLQGLVDQVDSVRGKVGDSLRANLASVVR 248 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 +R+L L DVP+ E L+L+ + ++ LEF L +R+ T A +EP Sbjct: 249 -NRELTDLVRDVPLAQTPEVLLLQPWDRDQIHRLFDDLEFRVLRDRLFDTL----AAVEP 303 Query: 302 VV 303 V Sbjct: 304 EV 305 >gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449] gi|32262868|gb|AAP77914.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449] Length = 912 Score = 297 bits (760), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 190/525 (36%), Positives = 287/525 (54%), Gaps = 37/525 (7%) Query: 465 IGHNIKYD-KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ-----KWLSYTR 517 IGHN+K+D L+ H + G D M++ ++ DS IA I KW ++T Sbjct: 408 IGHNLKFDLSLIFHTLELEHTGEIYDSMILGWLYDS------IAPIGLDKQMLKWFNHTM 461 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP---KLIVEKLLHVYERLDK 574 +++ + ++A E++ +L+ L K +L + +L+ Sbjct: 462 ISFDSVVAKDENFSQVNIAAATQYAAEDAIATFRLYHRLEEVFYKREWSSILELANKLEY 521 Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P I V+ ME GI++D LL+ + + S+++ L I++L GE FNL+SP+QL ILF Sbjct: 522 PFIKVLLAMECEGIKVDIPLLESLKEKASEHISQLSAQIFELCGETFNLNSPQQLAHILF 581 Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 +L +G K G L I+ +P+I IL++R+++K+KSTY + L + Sbjct: 582 NRLGLKAGRSVKGGLSTDERTLLAIIDA--HPVIALILDYREVNKLKSTYIEPLLRFGSA 639 Query: 695 RTQ-RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQI 753 + R++T + + T TGRL+S PNLQNIP++ + G+KIR+AFIS LIS DYSQI Sbjct: 640 NDKHRIYTSFLQSGTATGRLSSKSPNLQNIPVRREEGRKIRQAFISKEGHSLISIDYSQI 699 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELR+LAH K + L + F+ DIH AA +FGV +++ Q R AK+INF +IYG+ Sbjct: 700 ELRLLAHFCKDSSLIESFKQDKDIHFETAARLFGV---ELAAQKRAIAKSINFGLIYGMG 756 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 +LA L+I EA +YI+ YF FP I ++ K F+ +NGY +T+ G R ++D N Sbjct: 757 SKKLAQTLQISLKEAKNYIESYFALFPTIKNFLNAQKEFLLENGYSQTLLGHRRYFDFKN 816 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 + N R IN+ QGSAAD+ + +M +HK KMLLQ+HDEL+FE P Sbjct: 817 ATDFMKANF-LREGINSIFQGSAADLIKLSMCEIHKRYGHSDF--KMLLQVHDELIFEAP 873 Query: 934 EEE----ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +E+ A+QI+ H E L VPLK I + NW E Sbjct: 874 QEKAHIYAQEAAQIMNHIYE--------LEVPLKCGISIGKNWAE 910 Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 159/294 (54%), Gaps = 11/294 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L ++D F +R+FYA P L K +G P + GFCN LLQ+ K+ ++ A Sbjct: 2 NTLSVIDTFGFFFRSFYALPPLKNK-EGFPTGLLVGFCN----LLQSLYKDPSCTYLAFA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 + R +IY YK NR P+ LL QLP+ + G I I+G+EADD+IA+ Sbjct: 57 LEGGGENKRRQIYDAYKRNRQPPPQELLMQLPIAIEWIEKMGFLNISIEGYEADDVIASI 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 +A + V IIS DKDL QL+ T +YD + + I + K+G+ P+ + Q+ Sbjct: 117 NKVANAQNIVVRIISHDKDLYQLIDENTYIYDPIGKRDIREAECLYKYGVNPKNFIDYQS 176 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ--KKRRENIL-EYAETAR 241 L GD+ DNI GI GIG K+A L+ +G++E++ S +++ R ++L E A Sbjct: 177 LVGDTSDNIVGIKGIGAKSAQKLITHFGSIESLYERESELEEVVTPRIAHLLREGKNNAF 236 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGP--RLISFLKALEFTKLINRVATTYD 293 LS+KLV L D+ I L ++ + N P +++ LK + +I++V + ++ Sbjct: 237 LSKKLVTLYDDLLENIDLSKCLMPESN-PMLKILDELKKYDLKNIISKVQSPHE 289 >gi|15608767|ref|NP_216145.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv] gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551] gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97] gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11] gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|218753335|ref|ZP_03532131.1| DNA polymerase I [Mycobacterium tuberculosis GM 1503] gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172] gi|253799333|ref|YP_003032334.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435] gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C] gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem] gi|260186577|ref|ZP_05764051.1| DNA polymerase I [Mycobacterium tuberculosis CPHL_A] gi|260204898|ref|ZP_05772389.1| DNA polymerase I [Mycobacterium tuberculosis K85] gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A] gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85] gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503] gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207] gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506] gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001] gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002] gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003] gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004] gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005] gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006] gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008] gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007] gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009] gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010] gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012] gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475] gi|61223052|sp|P0A550|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I gi|61223053|sp|P0A551|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv] gi|2113913|emb|CAB08882.1| PROBABLE DNA POLYMERASE I POLA [Mycobacterium tuberculosis H37Rv] gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551] gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97] gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C] gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem] gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11] gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172] gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435] gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A] gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85] gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503] gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001] gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002] gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003] gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004] gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005] gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006] gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007] gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008] gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009] gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010] gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012] gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A] gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207] gi|740010|prf||2004291B DNA polymerase I Length = 904 Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 170/497 (34%), Positives = 286/497 (57%), Gaps = 11/497 (2%) Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQ 537 G ++ G D L +Y++ G+ S + ++ ++L R E + ++ S+ D +D++ Sbjct: 410 GWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAE 469 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 + I + ++ L L +L + ++ P+ V+++ME GI +D +L + Sbjct: 470 TIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTE 529 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 + ++ + E Y + G++ NL SPKQL +LF +L P +TKTG + T A L Sbjct: 530 LQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADAL 588 Query: 658 EQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + + + +P ++++L R ++++K T D L + R+HT ++ TGRL+S Sbjct: 589 QSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAA-DGRIHTTFNQTIAATGRLSST 646 Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 EPNLQNIPI+TD G++IR AF+ +L++ADYSQIE+RI+AH++ L + F Sbjct: 647 EPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGE 706 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+H VA+ FGV I++V+ ++RR K +++ + YG+S + L+ QL+I EA + + Y Sbjct: 707 DLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAY 766 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F RF G+ +Y+ R++GY T+ GRR + E++S +R ERAA+NAPIQGS Sbjct: 767 FARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGS 826 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AMI V K+L + +LA++MLLQ+HDEL+FE+ E ++ M A Sbjct: 827 AADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAY--- 883 Query: 956 INLRVPLKVNIKVSNNW 972 L VPL+V++ +W Sbjct: 884 -PLDVPLEVSVGYGRSW 899 Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 160/302 (52%), Gaps = 13/302 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG+S +RAFYA P + K GL NA+ GF ML LL ++ +H A F Sbjct: 17 LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 72 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR + YP+YKANR P+ Q+ + + A GI + GFEADD+IAT Sbjct: 73 DVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLA 132 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EG+ V +++ D+D +QLVS T LY V E + E V++K+G+ P + Sbjct: 133 TQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPD 192 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + EYG+L +++ N ++ K A R Sbjct: 193 FAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVR 252 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 +R+L L DVP+ + L L+ + + LEF L +R+ +D AA P Sbjct: 253 -NRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRL---FDTLAAAGGP 308 Query: 302 VV 303 V Sbjct: 309 EV 310 >gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08] Length = 920 Score = 296 bits (759), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 174/502 (34%), Positives = 283/502 (56%), Gaps = 18/502 (3%) Query: 481 ISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534 ++ RG+E D L SY+L R SH + L+ T E ++ ++ +D + Sbjct: 426 LAGRGWEVAGLTCDTELASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSDQAM-LDFGN 484 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 DS + ++E + + +L ++ ++ + ++ + + ME GI +D D+ Sbjct: 485 DSSAE--SMERAVAVTKLADVMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDI 542 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + +E + + + ++ +GEK NLSSPKQL +LF KL P +TK+G + T A Sbjct: 543 LEGLRSEFDERVTRAQGAAWEAAGEKINLSSPKQLQGVLFEKLDMPKTRRTKSG-YTTDA 601 Query: 655 QDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 L + ++P + ++LE R K++ T D L I + RVHT Y TGRL Sbjct: 602 DALAGLYEKTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHTTYMQTIAATGRL 659 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 +S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH++ L F Sbjct: 660 SSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFR 719 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + D H + A+ +FGV E VS R K +N+ + YG+S + L+ QL++ EA + + Sbjct: 720 SGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELM 779 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R++ ERAA+NAPI Sbjct: 780 AGYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPI 839 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV ++E QI+ +M A Sbjct: 840 QGSAADLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHA- 898 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + L VPL V+I V +W E Sbjct: 899 ---MELSVPLTVSIGVGRSWFE 917 Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 162/317 (51%), Gaps = 14/317 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ S G NA+ GF ML LL+N + +H AV + Sbjct: 37 LMVLDGHSMAFRAFYALPVESFTTSTGQHTNAVHGFIAMLINLLRNEKP----THVAVAW 92 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D FR Y +YKA R P Q+ L++ A I + + +EADDI+AT + Sbjct: 93 DLAGGIFRTTEYSEYKAGRAATPPEFPGQIDLIKEVLDALHIAHLSKENYEADDILATLS 152 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ + V +K+ +PP + Sbjct: 153 TRATAEGFKSLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPKTVEEKYLVPPARYPE 212 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S DN+PG+PG+G KTA L Y LEN++ A +K K +++ ++ + Sbjct: 213 LAALVGESADNLPGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSLRDHLDDVV 271 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAANIE 300 +RKL L D+ + + L L + + + LEF L +RV A + DA + Sbjct: 272 RNRKLNALVRDLDLDVTLAELARQPWDPKATRAVFDTLEFRTLWDRVRALASESDA---D 328 Query: 301 PVVLDINTTENKGIAIE 317 VV +T E G A++ Sbjct: 329 EVVEADDTLEVSGTALK 345 >gi|289554597|ref|ZP_06443807.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605] gi|289439229|gb|EFD21722.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605] Length = 903 Score = 296 bits (759), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 170/497 (34%), Positives = 286/497 (57%), Gaps = 11/497 (2%) Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQ 537 G ++ G D L +Y++ G+ S + ++ ++L R E + ++ S+ D +D++ Sbjct: 409 GWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAE 468 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 + I + ++ L L +L + ++ P+ V+++ME GI +D +L + Sbjct: 469 TIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTE 528 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 + ++ + E Y + G++ NL SPKQL +LF +L P +TKTG + T A L Sbjct: 529 LQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADAL 587 Query: 658 EQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + + + +P ++++L R ++++K T D L + R+HT ++ TGRL+S Sbjct: 588 QSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAA-DGRIHTTFNQTIAATGRLSST 645 Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 EPNLQNIPI+TD G++IR AF+ +L++ADYSQIE+RI+AH++ L + F Sbjct: 646 EPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGE 705 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+H VA+ FGV I++V+ ++RR K +++ + YG+S + L+ QL+I EA + + Y Sbjct: 706 DLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAY 765 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F RF G+ +Y+ R++GY T+ GRR + E++S +R ERAA+NAPIQGS Sbjct: 766 FARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGS 825 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AMI V K+L + +LA++MLLQ+HDEL+FE+ E ++ M A Sbjct: 826 AADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAY--- 882 Query: 956 INLRVPLKVNIKVSNNW 972 L VPL+V++ +W Sbjct: 883 -PLDVPLEVSVGYGRSW 898 Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 160/302 (52%), Gaps = 13/302 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG+S +RAFYA P + K GL NA+ GF ML LL ++ +H A F Sbjct: 16 LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR + YP+YKANR P+ Q+ + + A GI + GFEADD+IAT Sbjct: 72 DVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLA 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EG+ V +++ D+D +QLVS T LY V E + E V++K+G+ P + Sbjct: 132 TQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPD 191 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + EYG+L +++ N ++ K A R Sbjct: 192 FAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVR 251 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 +R+L L DVP+ + L L+ + + LEF L +R+ +D AA P Sbjct: 252 -NRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRL---FDTLAAAGGP 307 Query: 302 VV 303 V Sbjct: 308 EV 309 >gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] Length = 867 Score = 296 bits (759), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 163/443 (36%), Positives = 254/443 (57%), Gaps = 11/443 (2%) Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + V E + V + L+ LR L L V + ++ P +++++MEI GI IDQ +L Sbjct: 429 TDVGEQLGHRAWVTVALYPRLRQDLERNHLQDVLDGIEIPTQEILARMEIAGIAIDQSVL 488 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 ++ E Y G + NL+SPKQL +LF +L P +TKTG + T A Sbjct: 489 NELITEFEAAAQQSASEAYASIGHEVNLNSPKQLQTVLFDELNMPKTKRTKTG-YTTDAD 547 Query: 656 DLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 L + +P ++++L R +K+K T + R+HT Y TGRL+ Sbjct: 548 SLADLLVKTQHPFLEHLLAHRDRTKLKQTVVGL--QKVVADDGRIHTTYLQTVAATGRLS 605 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPT---KKLISADYSQIELRILAHIAKITPLYQVF 771 S +PNLQNIP++TD G++IR F + + L+S DYSQIE+RI+AH++ L Q F Sbjct: 606 SKDPNLQNIPVRTDAGRRIRSVFQAAQDDGYESLMSVDYSQIEMRIMAHLSGDEALIQAF 665 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 ++ D+HR VA ++F V IE V+ Q R K +++ ++YG+S + L+ QL IP EA+ Sbjct: 666 KDGEDLHRYVAGQVFEVPIEDVTDQQRSKVKAMSYGLVYGLSAYGLSRQLGIPTGEASAL 725 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF RF + EY+++ R GY ET++GRR + ++ S + +R + ERAA+NAP Sbjct: 726 MDDYFARFGAVKEYLDQVVEEARGRGYTETMYGRRRYLPQLRSDRRQLREMAERAALNAP 785 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGSAADI + AM V +L + +L ++MLLQ+HDE++ E+ E +++ +M +A Sbjct: 786 IQGSAADIMKIAMKRVDDALREAELKSRMLLQVHDEIILEIWAGEAIQVEKLVRENMSQA 845 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 +L VPL VN+ V NWQ+ Sbjct: 846 A----DLSVPLDVNVGVGPNWQD 864 Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 133/426 (31%), Positives = 203/426 (47%), Gaps = 16/426 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG SF YRA++A P + G NA+ GF +ML +L+N + + H AV F Sbjct: 6 LLLIDGHSFAYRAYFALPAENFSTSTGQTTNAVYGFLSMLLTVLENEKPD----HVAVAF 61 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR + YP+YKA R + PE Q+ L++ +A IP + ++G+EADDI+AT Sbjct: 62 DLGRQTFRLDEYPEYKAGRARTPEDFPGQVDLIQDMLRALNIPVLTLEGYEADDILATLA 121 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A G I S DKD QL S T T LY + + + V +K+G+ P Sbjct: 122 LQATDRGVTTKIASGDKDSFQLASDTVTILYPKRGVTELNRFTPQAVEEKYGVTPANYRG 181 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+ DN+PG+PG+G KTAA L +YG+L+ I+ NA I K E + ++ + + Sbjct: 182 LAALVGEKADNLPGVPGVGEKTAAKWLAKYGDLDAIIDNAEDIG-GKVGEKLRDHLDDVK 240 Query: 242 LSRKLVMLRTDVPI-TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 + +L L D+ + T PL+ + E + + + LEF +L RV + D + Sbjct: 241 RNYRLNKLVDDLELSTNPLDTQVGEGAHLDEVTALFDQLEFRQLAERVNALFFGDVEQVP 300 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 V L G + +D ++ +L D T + S + + L L + S Sbjct: 301 QVELP-EVVATSGADLRAWLD---AVEEPVGFALEDDTLGLASNDSAIWVDLTDLDENSF 356 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDT-MDAFHSKPIAIAISTLDQKDD 419 ++ TK V D++ V G + I DT + A+ P A S D D Sbjct: 357 NALDTFISTKKVVAHDVKPQVHAWVERGFTQPRPIMDTELAAYLLAPDARGYSLADMASD 416 Query: 420 TSFKVE 425 +E Sbjct: 417 LGVVLE 422 >gi|257438461|ref|ZP_05614216.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165] gi|257199040|gb|EEU97324.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165] Length = 859 Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 162/408 (39%), Positives = 245/408 (60%), Gaps = 9/408 (2%) Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG-EKFNLSSP 626 +Y ++ P+ V++ M TGI +D++ ++ ++ + L + I +G FN +SP Sbjct: 458 LYNNIEFPLAQVLADMTRTGILVDREGIEAFGVQLRQELDQVLTRIEMEAGTSDFNPNSP 517 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG +LF + P G KTK G W T A+ LE++ D P++++IL++R K+ STY + Sbjct: 518 KQLGTLLFDTMGLPHGKKTKNG-WSTDAETLEKLR--DIPLVEDILQYRACQKLNSTYVE 574 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 L I + R+HT ++ TGRL+S PNLQNIPI+T++G K+R F++ P L+ Sbjct: 575 GLLKVIGE-DGRIHTRFNQTEARTGRLSSDNPNLQNIPIRTEMGSKLRAYFVAKPGCVLV 633 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 ADYSQIELRILAH+ + + F + DIHR AA+I+ + E V+P++R AK INF Sbjct: 634 DADYSQIELRILAHVTGDAHMQEAFLSGADIHRSTAAKIYNIRPEDVTPRLRSSAKAINF 693 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YG + L+ + + EA +++ Y FP I Y+EKT RQ GYV T+FGRR Sbjct: 694 GIMYGKGAYSLSKDIGVSVKEAEAFLQTYLATFPNIDGYMEKTIADARQCGYVSTLFGRR 753 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 E+NS +IR ER A N PIQG+AAD+ + AM+ V + L + K+ ++++L +HD Sbjct: 754 RALPELNSNNHNIRASGERMARNTPIQGTAADVIKLAMVRVWRRLRNEKMESRLILTVHD 813 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EL+ E PE E A+QI+ ME C ++ VPL ++ NW E Sbjct: 814 ELIVEAPEAEAEKAAQILREEME-GC---VHYAVPLSTDVHTGKNWLE 857 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 159/290 (54%), Gaps = 12/290 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DG+S RAFY LL+ K DG NAI GF N++ LL+ + +A V FD Sbjct: 10 LLVIDGNSIANRAFYGIKLLTTK-DGRYTNAIFGFLNIMNSLLRECEPDEVA----VAFD 64 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E+Y YK R +P+ L Q+P+++ G + +G+EADDI+ T Sbjct: 65 LKHPTFRHEMYDGYKGTRHAMPDELAQQMPILKELLTDLGYRQVSAKGWEADDILGTLAA 124 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCL------YDTVKEEKIDIEHVIKKWGIPPEKMV 180 E + + D+D +QLVS TT + K E +D++ + +K+GI P++++ Sbjct: 125 ACEARRDDCFLATGDRDSLQLVSETTTVLLATSAMGRSKTETMDLDAIHEKYGIEPKQLI 184 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINA-SRIKQKKRRENILEYAET 239 +++L GD+ DNIPG+ GIG KTA L++ +G L+++ + S I + ++REN+L E Sbjct: 185 EVKSLMGDTSDNIPGVKGIGEKTAMTLVKNFGTLDSVYDHLDSPIIKPRQRENLLACRED 244 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A LS L +RTD PI + + N P + ++ LE LI R Sbjct: 245 AYLSHTLGTIRTDAPIDTAEGAYKVTEGNKPAAVRLMQELEIQTLITRFG 294 >gi|215404071|ref|ZP_03416252.1| DNA polymerase I [Mycobacterium tuberculosis 02_1987] gi|215411274|ref|ZP_03420082.1| DNA polymerase I [Mycobacterium tuberculosis 94_M4241A] gi|215445811|ref|ZP_03432563.1| DNA polymerase I [Mycobacterium tuberculosis T85] gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987] gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85] gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210] gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A] gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987] gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85] gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A] gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148] Length = 904 Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 170/497 (34%), Positives = 286/497 (57%), Gaps = 11/497 (2%) Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQ 537 G ++ G D L +Y++ G+ S + ++ ++L R E + ++ S+ D +D++ Sbjct: 410 GWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAE 469 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 + I + ++ L L +L + ++ P+ V+++ME GI +D +L + Sbjct: 470 TIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTE 529 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 + ++ + E Y + G++ NL SPKQL +LF +L P +TKTG + T A L Sbjct: 530 LQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADAL 588 Query: 658 EQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + + + +P ++++L R ++++K T D L + R+HT ++ TGRL+S Sbjct: 589 QSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAA-DGRIHTTFNQTIAATGRLSST 646 Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 EPNLQNIPI+TD G++IR AF+ +L++ADYSQIE+RI+AH++ L + F Sbjct: 647 EPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGE 706 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+H VA+ FGV I++V+ ++RR K +++ + YG+S + L+ QL+I EA + + Y Sbjct: 707 DLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAY 766 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F RF G+ +Y+ R++GY T+ GRR + E++S +R ERAA+NAPIQGS Sbjct: 767 FARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGS 826 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AMI V K+L + +LA++MLLQ+HDEL+FE+ E ++ M A Sbjct: 827 AADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAY--- 883 Query: 956 INLRVPLKVNIKVSNNW 972 L VPL+V++ +W Sbjct: 884 -PLDVPLEVSVGYGRSW 899 Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 114/302 (37%), Positives = 161/302 (53%), Gaps = 13/302 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG+S +RAFYA P + K GL NA+ GF ML LL ++ +H A F Sbjct: 17 LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 72 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR + YP+YKANR P+ Q+ + + A GI + GFEADD+IAT Sbjct: 73 DVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLA 132 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EG+ V +++ D+D +QLVS T LY V E + E V++K+G+PP + Sbjct: 133 TQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLPPGQYPD 192 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + EYG+L +++ N ++ K A R Sbjct: 193 FAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVR 252 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 +R+L L DVP+ + L L+ + + LEF L +R+ +D AA P Sbjct: 253 -NRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRL---FDTLAAAGGP 308 Query: 302 VV 303 V Sbjct: 309 EV 310 >gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2] gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3] Length = 883 Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 174/502 (34%), Positives = 283/502 (56%), Gaps = 18/502 (3%) Query: 481 ISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534 ++ RG+E D L SY+L R SH + L+ T E ++ ++ +D + Sbjct: 389 LAGRGWEVAGLTCDTELASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSDQAM-LDFGN 447 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 DS + ++E + + +L ++ ++ + ++ + + ME GI +D D+ Sbjct: 448 DSSAE--SMERAVAVTKLADVMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDI 505 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + +E + + + ++ +GEK NLSSPKQL +LF KL P +TK+G + T A Sbjct: 506 LEGLRSEFDERVTRAQGAAWEAAGEKINLSSPKQLQGVLFEKLDMPKTRRTKSG-YTTDA 564 Query: 655 QDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 L + ++P + ++LE R K++ T D L I + RVHT Y TGRL Sbjct: 565 DALAGLYEKTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHTTYMQTIAATGRL 622 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 +S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH++ L F Sbjct: 623 SSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFR 682 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + D H + A+ +FGV E VS R K +N+ + YG+S + L+ QL++ EA + + Sbjct: 683 SGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELM 742 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R++ ERAA+NAPI Sbjct: 743 AGYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPI 802 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV ++E QI+ +M A Sbjct: 803 QGSAADLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHA- 861 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + L VPL V+I V +W E Sbjct: 862 ---MELSVPLTVSIGVGRSWFE 880 Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 106/316 (33%), Positives = 161/316 (50%), Gaps = 14/316 (4%) Query: 8 FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++DG S +RAFYA P+ S G NA+ GF ML LL+N + +H AV +D Sbjct: 1 MVLDGHSMAFRAFYALPVESFTTSTGQHTNAVHGFIAMLINLLRNEKP----THVAVAWD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR Y +YKA R P Q+ L++ A I + + +EADDI+AT + Sbjct: 57 LAGGIFRTTEYSEYKAGRAATPPEFPGQIDLIKEVLDALHIAHLSKENYEADDILATLST 116 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVCL 182 A EGF ++S D+D MQLV+ T LY ++ + V +K+ +PP + L Sbjct: 117 RATAEGFKSLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPKTVEEKYLVPPARYPEL 176 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL G+S DN+PG+PG+G KTA L Y LEN++ A +K K +++ ++ + Sbjct: 177 AALVGESADNLPGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSLRDHLDDVVR 235 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAANIEP 301 +RKL L D+ + + L L + + + LEF L +RV A + DA + Sbjct: 236 NRKLNALVRDLDLDVTLAELARQPWDPKATRAVFDTLEFRTLWDRVRALASESDA---DE 292 Query: 302 VVLDINTTENKGIAIE 317 VV +T E G A++ Sbjct: 293 VVEADDTLEVSGTALK 308 >gi|325068714|ref|ZP_08127387.1| DNA polymerase I [Actinomyces oris K20] Length = 945 Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 177/516 (34%), Positives = 280/516 (54%), Gaps = 23/516 (4%) Query: 475 VLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI----------LKS 523 L G+++ G D L Y+ + S+D+ ++ Q+WL + Sbjct: 434 ALSARGLTLDGVVADPSLAGYLCRPEQRSYDVDTLTQRWLGIDLAAVNEGGAGGDGGSGE 493 Query: 524 RKSSIPIDKISDSQVQEHAIENSN---VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 +S+ ++ ++ V + ++ +L L ++L +++ L ++ L+ P+ + Sbjct: 494 SQSAFDLEALTSEAVPASHLASAGRAAALLPLQVVLDEQMVARDALGLFTDLEMPVAATL 553 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 + ME GI +D +L+ E+ + E Y +G + NLSSPKQL +LF +LK P Sbjct: 554 TVMEDAGIAVDDAVLQIRQTELDARVTHAAEGAYAAAGRELNLSSPKQLQAVLFDELKMP 613 Query: 641 SGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 KTKTG + T A L + +P ++++LE R K++ T + L I R+ Sbjct: 614 KTRKTKTG-YTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQTV-EGLRKAIQP-DGRI 670 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRIL 758 HT + TGRL+S +PNLQNIP + + G +IR AF + + L++ADYSQIE+RI+ Sbjct: 671 HTTFQQTIAATGRLSSTDPNLQNIPARHEEGMRIREAFTVGEGYECLMTADYSQIEMRIM 730 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH++ L F + D+HR VAA + G+++E V+ Q R H K +++ + YG+S F LA Sbjct: 731 AHLSADQALIDAFRSGEDLHRYVAALVHGIDVEDVTAQQRSHVKAMSYGLAYGLSTFGLA 790 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL I ++AAD YF RF +H+Y+E R++GY ET+FGRR + ++ S Sbjct: 791 RQLGIDNADAADLRNAYFARFGKVHDYLESVVEQARRDGYTETMFGRRRYLPDLTSDNRQ 850 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 R + ERAA+NAPIQGSAADI ++AMI V +L + LA+++LLQIHDEL+ EV E Sbjct: 851 RREMAERAALNAPIQGSAADIVKKAMIDVDSALTERALASRILLQIHDELLIEVAPGEAE 910 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ M A L VPL V + W+E Sbjct: 911 AVENLLKEQMGGAA----ELSVPLDVAVGRGRTWRE 942 Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 103/288 (35%), Positives = 156/288 (54%), Gaps = 11/288 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P+ + G NA+ GF +M LL N R +H AV F Sbjct: 25 LLLIDGHSMAFRAFYALPVDNFTTSTGQSTNAVHGFVSMFLSLLDNERP----THVAVAF 80 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D P TFR E Y +YK R + P+ L Q+ L++ +A G+ A+ G+EADDI+AT Sbjct: 81 DLPGGTFRTEEYAEYKGTRDETPQPFLGQVELIQQVLEAMGVTALTAPGYEADDILATLA 140 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 A+ EG V I S D+D Q V+ + VK ++ + V +++G+ PE+ Sbjct: 141 TSAQAEGMEVLICSGDRDSFQTVTERCTVLYPVKGVSTLRRMTPQEVEERYGVTPERYPH 200 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G++ DN+PG+PG+G KTAA L Y L+ ++ +A +IK K +++ ++ + Sbjct: 201 LAALVGETSDNLPGVPGVGPKTAAKWLNLYDGLDGVIAHADQIKGKA-GQSLRDHLDDVV 259 Query: 242 LSRKLVMLRTDVPITI-PLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +R+L L TD+ + + P L L + L +ALEF L R Sbjct: 260 RNRRLNHLLTDLDLGVLPRTDLRLVGADRSALARVFEALEFRTLHQRA 307 >gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1] Length = 892 Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 174/502 (34%), Positives = 283/502 (56%), Gaps = 18/502 (3%) Query: 481 ISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534 ++ RG+E D L SY+L R SH + L+ T E ++ ++ +D + Sbjct: 398 LAGRGWEVAGLTCDTELASYLLHPDRRSHKFDDAVRTHLNLTLGEGEENSDQAM-LDFGN 456 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 DS + ++E + + +L ++ ++ + ++ + + ME GI +D D+ Sbjct: 457 DSSAE--SMERAVAVTKLADVMEKEVEARGGSELLHDVEMGVQRCLISMERVGIAVDTDI 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 L+ + +E + + + ++ +GEK NLSSPKQL +LF KL P +TK+G + T A Sbjct: 515 LEGLRSEFDERVTRAQGAAWEAAGEKINLSSPKQLQGVLFEKLDMPKTRRTKSG-YTTDA 573 Query: 655 QDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 L + ++P + ++LE R K++ T D L I + RVHT Y TGRL Sbjct: 574 DALAGLYEKTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHTTYMQTIAATGRL 631 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 +S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH++ L F Sbjct: 632 SSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFR 691 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + D H + A+ +FGV E VS R K +N+ + YG+S + L+ QL++ EA + + Sbjct: 692 SGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELM 751 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R++ ERAA+NAPI Sbjct: 752 AGYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPI 811 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV ++E QI+ +M A Sbjct: 812 QGSAADLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIVTDAMGHA- 870 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 + L VPL V+I V +W E Sbjct: 871 ---MELSVPLTVSIGVGRSWFE 889 Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 162/317 (51%), Gaps = 14/317 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ S G NA+ GF ML LL+N + +H AV + Sbjct: 9 LMVLDGHSMAFRAFYALPVESFTTSTGQHTNAVHGFIAMLINLLRNEKP----THVAVAW 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D FR Y +YKA R P Q+ L++ A I + + +EADDI+AT + Sbjct: 65 DLAGGIFRTTEYSEYKAGRAATPPEFPGQIDLIKEVLDALHIAHLSKENYEADDILATLS 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ + V +K+ +PP + Sbjct: 125 TRATAEGFKSLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPKTVEEKYLVPPARYPE 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S DN+PG+PG+G KTA L Y LEN++ A +K K +++ ++ + Sbjct: 185 LAALVGESADNLPGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSLRDHLDDVV 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAANIE 300 +RKL L D+ + + L L + + + LEF L +RV A + DA + Sbjct: 244 RNRKLNALVRDLDLDVTLAELARQPWDPKATRAVFDTLEFRTLWDRVRALASESDA---D 300 Query: 301 PVVLDINTTENKGIAIE 317 VV +T E G A++ Sbjct: 301 EVVEADDTLEVSGTALK 317 >gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104] gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104] Length = 913 Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 177/513 (34%), Positives = 290/513 (56%), Gaps = 25/513 (4%) Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----- 521 KL +H ++ RG+ D L +Y++ G+ S + +A L Y R+E+ Sbjct: 408 KLAMHD--LAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLA---LRYLRRELRAENPQ 462 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + S + +D Q + I + +L L L +L + ++ P+ V++ Sbjct: 463 QQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRVLA 522 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME GI +D DLL ++ ++ + + E Y + G++ NL SPKQL +LF +L+ P Sbjct: 523 GMEKAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQMPK 582 Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 +TKTG + T A L+ + + +P ++++L R +++K T D L N + R+H Sbjct: 583 TKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAS-DGRIH 639 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759 T ++ TGRL+S EPNLQNIPI+T+ G++IR AF+ +L++ADYSQIE+RI+A Sbjct: 640 TTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYAELMTADYSQIEMRIMA 699 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+++ L + F D+H VA+ FGV IE+V+ ++RR K +++ + YG+S + L+ Sbjct: 700 HLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQ 759 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL+I EA + + YF RF G+ +Y+ R++GY T+ GRR + E++S + Sbjct: 760 QLKISTEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQV 819 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ERAA+NAPIQGSAADI + AMI V K++++ L +++LLQ+HDEL+FEV E Sbjct: 820 REAAERAALNAPIQGSAADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQ 879 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + M A L VPL+V++ +W Sbjct: 880 LEALARDKMGGAY----PLDVPLEVSVGYGRSW 908 Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 167/307 (54%), Gaps = 14/307 (4%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 Q L L+DG+S +RAFYA P + K GL NA+ GF ML LL ++ +H Sbjct: 22 QNRPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTH 77 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A FD TFR++ YP+YKANR P+ Q+ + + A GI + GFEADD+ Sbjct: 78 IAAAFDVSRQTFRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDL 137 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPP 176 IAT AE EG+ V +++ D+D +QLVS T LY V E + E V++K+G+ P Sbjct: 138 IATLATQAENEGYRVLVVTGDRDSLQLVSDNVTVLYPRKGVSELTRFTPEAVVEKYGLTP 197 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 ++ AL GD DN+PGIPG+G KTA+ + EYG+L+ ++ N ++ K + + E+ Sbjct: 198 QQYPDFAALRGDPSDNLPGIPGVGEKTASKWIAEYGSLQALVDNVDSVRGKV-GDALREH 256 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + +R+L L DVP+ + L L+ + ++ LEF L +R+ T Sbjct: 257 LASVIRNRELTDLIKDVPLAQTPDTLRLQPWDRDQIHRLFDDLEFRVLRDRLFETL---- 312 Query: 297 ANIEPVV 303 A +EP V Sbjct: 313 AAVEPEV 319 >gi|183982446|ref|YP_001850737.1| DNA polymerase I PolA [Mycobacterium marinum M] gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M] Length = 899 Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 180/533 (33%), Positives = 300/533 (56%), Gaps = 11/533 (2%) Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSS 502 TLT + + L ++ + K H K L G ++ G D L +Y++ G+ S Sbjct: 369 TLTPDDDAALGEWLADPAKPKALHEAKLAIHDLRGRGWTLNGVTSDTALAAYLVRPGQRS 428 Query: 503 HDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI 561 + ++ ++L R E + ++ S+ D +D + AI + ++ L L +L Sbjct: 429 FTLDDLSLRYLRRELRAETPEQQQLSLLDDDDTDVAAAQTAILRARAVIDLADALDAELD 488 Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF 621 + ++ P+ V+++ME GI +D +L + + + + E Y + G++ Sbjct: 489 RIDSTGLLADMELPVQHVLAEMETAGIAVDLTMLGGLQSHFADQIRDAAEAAYAVIGKQI 548 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKI 680 NL SPKQL +LF +L P +TKTG + T A L+ + + +P ++++L R ++++ Sbjct: 549 NLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDVTRL 607 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739 K T D L N + R+HT ++ TGRL+S EPNLQNIPI+TD G++IR AF+ Sbjct: 608 KVT-VDGLLNSVAD-DGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRQIRDAFVVG 665 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 +L++ADYSQIE+RI+AH+++ L + F D+H VA+ FGV I++V+ ++RR Sbjct: 666 DGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRR 725 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 K +++ + YG+S + L++QL+I +A + +YF RF G+ +Y+ R++GY Sbjct: 726 RVKAMSYGLAYGLSAYGLSSQLKISTEDAKVQMDQYFSRFGGVRDYLMAVVEQARKDGYT 785 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 T+ GRR + E++S +R ERAA+NAPIQGSAADI + AMI V K+L++H L ++ Sbjct: 786 STVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIEVDKALKEHALKSR 845 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 MLLQ+HDEL+FEV E ++ M A L VPL+V++ +W Sbjct: 846 MLLQVHDELLFEVAAGEREQIEALVRDKMGSAY----PLDVPLEVSVGFGRSW 894 Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 114/302 (37%), Positives = 161/302 (53%), Gaps = 14/302 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG+S +RAFYA P + K GL NA+ GF ML LL ++ +H A F Sbjct: 13 LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 68 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+E YP+YKANR P+ Q+ + + A GI + GFEADDIIAT Sbjct: 69 DVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAAPGFEADDIIATLA 128 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EG+ V +++ D+D +QLVS T LY V E + E V++K+G+ P + Sbjct: 129 TQAEGEGYRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPVQYPD 188 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTA+ + EYG+L+ ++ ++ K A R Sbjct: 189 FAALRGDPSDNLPGIPGVGEKTASKWIVEYGSLQGLVDQVDSVRGKVGDSLRANLASVVR 248 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 +R+L L DVP+ E L L+ + ++ LEF L +R+ T A +EP Sbjct: 249 -NRELTDLVRDVPLAQTPEALRLQPWDRDQIHRLFDDLEFRVLRDRLFDTL----AAVEP 303 Query: 302 VV 303 V Sbjct: 304 EV 305 >gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] Length = 896 Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 188/520 (36%), Positives = 308/520 (59%), Gaps = 31/520 (5%) Query: 467 HNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDS----GRSSHDIASIAQKWLSYTRKEIL 521 N KYD +++ + + I +R + D M++S++L++ G K +S+T +++ Sbjct: 394 QNFKYDYEIIKNNFDIELRLYADTMILSWLLNTNEKVGLDYQIDKYFDHKMISFT--DVV 451 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLW---LLLRPKLIVEKLLHVYERLDKPMID 578 K ++ +D + E+A E++ + L+L+ L + + E++L++ ++ I Sbjct: 452 KKGENFSNVDI---ERACEYAAEDALMTLRLFKKQLEIFKEKEEEEILNLAFEVEFDFIY 508 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V++ ME+ GI++D +LLK+ +KN+ L IY SG +FN++SPKQLG +LF L Sbjct: 509 VLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIYQTSGAEFNINSPKQLGALLFETLG 568 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT-Q 697 P+ KTKTG + T L + ++ +I +L++R+ K++STY + L +K Sbjct: 569 LPTAKKTKTG-YSTDEAVLNGL-INEHEVIPLLLQYREAYKLQSTYIEPLLELGSKSDDN 626 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 R+HT + T TGRL+S PNLQNIP K+D +IR+AFI KL++ DYSQIELR+ Sbjct: 627 RIHTSFLHTGTATGRLSSKNPNLQNIPTKSDSNIQIRKAFIPKDGYKLVAVDYSQIELRL 686 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 LAH ++ L + FEN LDIH A +IFG E+ + + R AK+INF ++YG+ +L Sbjct: 687 LAHFSQDKALVEAFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGSKKL 743 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 L IP EA YI YF F + +Y++ ++F NGYV+T+ R+ +D NS + Sbjct: 744 GETLGIPSKEAKQYIDSYFEAFKSVKDYLKSIEDFANINGYVKTLLNRKRLFD-FNSANA 802 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--- 934 ++ R A+N QGSAAD+ + AMI++++ +D++ K+LLQIHDELVFEV + Sbjct: 803 MMKAAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNE-NIKLLLQIHDELVFEVKDEFV 861 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EEIT + + I+ ++ K L VPLKV++ V ++W++ Sbjct: 862 EEITFSIKNIMENIYK-------LNVPLKVSLSVGSSWKD 894 Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 97/258 (37%), Positives = 147/258 (56%), Gaps = 7/258 (2%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D F++R+++A P L + DG P + GF N + N K+ + D Sbjct: 7 IIDTFGFLFRSYFALPPL-KSRDGFPTGLLTGFIN----FISNIGKDFETDYIVFALDAK 61 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFRN++Y YKA RP+ PE LL QLP+ + G G+EADD++A+ A Sbjct: 62 GETFRNKLYSQYKAQRPEAPEDLLTQLPIAISWIEKMGFKTAIRTGYEADDMVASIANDA 121 Query: 129 EKEGFAVTIISTDKDLMQLV--SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +++G V I+S DKDL QL+ + + L+D K+ I+ E I+K+G+ P + Q+L Sbjct: 122 KQKGLEVRIVSHDKDLYQLIDDANSVYLFDPTKKVIINEEKCIEKYGVKPSQFTDYQSLL 181 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPG+ G+G KTA L++E+G LENI N I++K+ +E ++E E A LS+KL Sbjct: 182 GDTADNIPGVKGVGAKTAESLIKEFGTLENIYANIDNIEKKRTKELLIEGKENAILSKKL 241 Query: 247 VMLRTDVPITIPLEHLIL 264 V L D LE +L Sbjct: 242 VTLMNDCHYIDNLEEFVL 259 >gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 919 Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 177/513 (34%), Positives = 290/513 (56%), Gaps = 25/513 (4%) Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----- 521 KL +H ++ RG+ D L +Y++ G+ S + +A L Y R+E+ Sbjct: 414 KLAMH--DLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLA---LRYLRRELRAENPQ 468 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + S + +D Q + I + +L L L +L + ++ P+ V++ Sbjct: 469 QQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRVLA 528 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME GI +D DLL ++ ++ + + E Y + G++ NL SPKQL +LF +L+ P Sbjct: 529 GMENAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQMPK 588 Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 +TKTG + T A L+ + + +P ++++L R +++K T D L N + R+H Sbjct: 589 TKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAS-DGRIH 645 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759 T ++ TGRL+S EPNLQNIPI+T+ G++IR AF+ +L++ADYSQIE+RI+A Sbjct: 646 TTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYAELMTADYSQIEMRIMA 705 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+++ L + F D+H VA+ FGV IE+V+ ++RR K +++ + YG+S + L+ Sbjct: 706 HLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQ 765 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL+I EA + + YF RF G+ +Y+ R++GY T+ GRR + E++S + Sbjct: 766 QLKISTEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQV 825 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ERAA+NAPIQGSAADI + AMI V K++++ L +++LLQ+HDEL+FEV E Sbjct: 826 REAAERAALNAPIQGSAADIIKVAMIEVDKAIKEAGLRSRILLQVHDELLFEVAAGEREQ 885 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + M A L VPL+V++ +W Sbjct: 886 LEALARDKMGGAY----PLDVPLEVSVGYGRSW 914 Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 167/307 (54%), Gaps = 14/307 (4%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 Q L L+DG+S +RAFYA P + K GL NA+ GF ML LL ++ +H Sbjct: 28 QNRPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTH 83 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A FD TFR++ YP+YKANR P+ Q+ + + A GI + GFEADD+ Sbjct: 84 IAAAFDVSRQTFRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDL 143 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPP 176 IAT AE EG+ V +++ D+D +QLVS T LY V E + E V++K+G+ P Sbjct: 144 IATLATQAENEGYRVLVVTGDRDSLQLVSDNVTVLYPRKGVSELTRFTPEAVVEKYGLTP 203 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 ++ AL GD DN+PGIPG+G KTA+ + EYG+L+ ++ N ++ K + + E+ Sbjct: 204 QQYPDFAALRGDPSDNLPGIPGVGEKTASKWIAEYGSLQALVDNVDSVRGKV-GDALREH 262 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + +R+L L DVP+ + L L+ + ++ LEF L +R+ T Sbjct: 263 LASVIRNRELTDLIKDVPLAQTPDTLRLQPWDRDQIHRLFDDLEFRMLRDRLFETL---- 318 Query: 297 ANIEPVV 303 A +EP V Sbjct: 319 AAVEPEV 325 >gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 906 Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 175/510 (34%), Positives = 292/510 (57%), Gaps = 19/510 (3%) Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRK 525 KL +H ++ RG+ D L +Y++ G+ S + ++ ++L R E + ++ Sbjct: 401 KLAMHD--LAGRGWTLAGVTSDTALAAYLVRPGQRSFSLEDLSLRYLRRELRAETAEQQQ 458 Query: 526 SSIPIDK-ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 S+ D +D Q + I + +L L L +L + ++ P+ V++ ME Sbjct: 459 LSLLDDNDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLGGMELPVQRVLAGME 518 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 TGI +D +LL ++ ++ + + E Y + G++ NL SPKQL +LF +L+ P + Sbjct: 519 HTGIAVDLELLGELQSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQTVLFDELEMPKTKR 578 Query: 645 TKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFY 703 TKTG + T A L+ + + +P ++++L R ++++K T D L + R+HT + Sbjct: 579 TKTG-YTTDADALQSLFDKTGHPFLQHLLTHRDVTRLKVT-VDGLLASVAS-DGRIHTTF 635 Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIA 762 + TGRL+S EPNLQNIPI+T+ G++IR AF+ +L++ADYSQIE+RI+AH++ Sbjct: 636 NQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGDGYSELMTADYSQIEMRIMAHLS 695 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 + L + F D+H VA+ FGV I +V+ ++RR K +++ + YG+S + L+ QL+ Sbjct: 696 RDEGLIEAFNTGEDLHSFVASRAFGVPIGEVTAELRRRVKAMSYGLAYGLSAYGLSQQLK 755 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 I EA + + YF RF G+ +Y+ + R++GY T+ GRR + E++S +R Sbjct: 756 ISTEEAKEQMDAYFARFGGVRDYLMNIVDQARKDGYTSTVLGRRRYLPELDSSNRQVREA 815 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 ERAA+NAPIQGSAADI + AMI V K++++ L ++MLLQ+HDEL+FEV E Sbjct: 816 AERAALNAPIQGSAADIIKVAMIEVDKAIKEAGLKSRMLLQVHDELLFEVAPGERERLEA 875 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + M A L VPL+V++ +W Sbjct: 876 LAREKMGGAY----PLDVPLEVSVGYGRSW 901 Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 164/307 (53%), Gaps = 14/307 (4%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 Q + L L+DG+S +RAFYA P + K GL NA+ GF ML LL ++ +H Sbjct: 15 QTKPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDETPTH 70 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A FD TFR+E YP+YKANR P+ Q+ + + A GI + GFEADD+ Sbjct: 71 VAAAFDVSRQTFRSERYPEYKANRSSTPDEFHGQIDITKEVLNALGITVLAEPGFEADDL 130 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPP 176 IAT AE EGF V +++ D+D +QLVS T LY V E + E V++K+G+ P Sbjct: 131 IATLATQAEHEGFRVLVVTGDRDSLQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTP 190 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + AL GD DN+PGIPG+G KTA+ + EYG+L+ ++ N ++ K Sbjct: 191 TQYPDFAALRGDPSDNLPGIPGVGEKTASKWIAEYGSLQGLVDNVDSVRGKVGDALRANL 250 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A R +R+L L DVP+ + L ++ + ++ LEF L +R+ T Sbjct: 251 AGVIR-NRELTDLVKDVPLAQTPDTLRMQPWDRDQIHRLFDDLEFRVLRDRLFETL---- 305 Query: 297 ANIEPVV 303 A +EP V Sbjct: 306 AAVEPEV 312 >gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149] gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149] Length = 902 Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 173/515 (33%), Positives = 288/515 (55%), Gaps = 14/515 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K+ +L G S+ G D L +Y+ + S+D+ +A ++L + + Sbjct: 391 KVLHDSKHARLAFAARGWSLAGVARDTELAAYLARPDQRSYDLTDLALRYL-HRELRVDA 449 Query: 523 SRKSSIPIDKISD-SQVQEHAIENSNVILQLWLLLRPKLI--VEKLLHVYERLDKPMIDV 579 + D + D + +++ + + L L + +L E+ + +++ P+ +V Sbjct: 450 PETGQLTFDGLGDDGEAEQNLMLQARATLDLADAIDAELSRDGEQSARLMAQVELPLSEV 509 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 ++ M+ GI D D L+++ A + + S + Y G +FNL SPKQL ++LF +L Sbjct: 510 LAAMQRVGIAADLDYLQELEAHFAGEVKSAAQGAYAAVGREFNLGSPKQLQELLFGELGL 569 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDN-PIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P K KTG + T A L+ + + P+++++L R ++K+K+T D L +++ R Sbjct: 570 PKTKKIKTG-YTTDADALQWLYAQNPLPVLEHLLRHRDVAKLKTT-VDGLLKSVSE-DGR 626 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRI 757 +HT + TGRL+S +PNLQNIPI+T+ G++IRRAF+ + L++ADYSQIE+RI Sbjct: 627 IHTTFKQTVAATGRLSSTDPNLQNIPIRTEEGRRIRRAFVVGKGFECLLTADYSQIEMRI 686 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 +AH++ L + F + D H A+ +FGV + +V+ RR K +N+ + YG+S F L Sbjct: 687 MAHLSSDDKLIEAFNSGHDFHAATASSVFGVPVAEVTADQRRKIKAMNYGLAYGLSAFGL 746 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 + QL I EA + YF F G+ +Y+++ R +GY TI GRR + ++ S Sbjct: 747 SQQLGITAEEARGLMDNYFAGFGGVRDYLQEVVARARHDGYTSTILGRRRYLPDLVSDNR 806 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 R++ ER A+NAPIQGSAADI + AM+ V L + L ++MLLQ+HDELVFEV E Sbjct: 807 QRRDMAERMALNAPIQGSAADIIKVAMLRVDAGLREAGLRSRMLLQVHDELVFEVAPGER 866 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 T ++ M +A L VPL+V++ +W Sbjct: 867 DTLEALVRSQMGEA----YPLSVPLEVSVGQGRDW 897 Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 127/226 (56%), Gaps = 9/226 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L LVDG S YRAF+A P+ + G P NA+ GF +ML +L++ + +H V F Sbjct: 8 LLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQP----THIVVAF 63 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR E Y +YKA R + P Q+ LV+ A IP +E +G+EADD+IAT Sbjct: 64 DVSRHSFRTEKYAEYKAGRSETPTDFKGQVSLVKEVLAALRIPVVEKEGYEADDVIATLA 123 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A +G +V I + D+D QLV + T LY ++D V K+G+ P++ Sbjct: 124 CQARDQGMSVLITTGDRDAFQLVGDSVTVLYPRKGVSDLARMDPAAVETKYGVSPQRYRD 183 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 L AL G++ DN+PG+PG+G KTAA + YG +E ++ A IK K Sbjct: 184 LAALVGETSDNLPGVPGVGPKTAAKWINLYGGVEGVVARADEIKGK 229 >gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ] gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ] Length = 874 Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 160/418 (38%), Positives = 236/418 (56%), Gaps = 6/418 (1%) Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 +L L + ERL+ P+I V+ ME GI +D L AE++ +L LE+ ++ L+G Sbjct: 463 RLDTAGLTDLVERLELPLIPVLLDMERAGIGVDLRSLAAFGAEVATDLTRLEKELHTLAG 522 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 FN S +QLG+ILFT++ KT G T+ LE++ G NP++ ILE+R+L Sbjct: 523 HPFNPRSSQQLGEILFTEMGLTPKGKTPGGAASTSQDALERL-AGSNPLVDRILEFRKLE 581 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 K++STY D LP + R+HT + +T TGRL+S PNLQNIPI+ LG+++R F+ Sbjct: 582 KLRSTYLDPLPK-LADADGRIHTTLNNMATATGRLSSSNPNLQNIPIRGPLGRRMRECFV 640 Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 + P K L++ADYSQIELR+LAH++ L F DIH A+ +F ++ P R Sbjct: 641 AGPGKTLVAADYSQIELRVLAHLSGEPALLSAFAAGADIHARTASLLFDKPEAEIGPDER 700 Query: 799 RHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY 858 R AKTINF ++YG+ P +L+ L I A +I +YF R G+ + + + GY Sbjct: 701 RQAKTINFGLLYGMGPQKLSRDLGIKLDAAKAFIAKYFERLSGLSAFYDNIVESAKTQGY 760 Query: 859 VETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 V T+ GRR +I S S + + R AIN +QG AADI + AM++ HK + + Sbjct: 761 VTTLAGRRRLLPDIESKNSQLASQARRQAINTVVQGGAADIIKMAMLAAHKDADLKRAGA 820 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 M+LQIHDEL+ E P + A + + M C I L VPL V+ + W + + Sbjct: 821 VMVLQIHDELLLETPMDTADAAGKRLSDLM---C-GVIKLAVPLVVDWGTGHTWGQAH 874 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 149/288 (51%), Gaps = 21/288 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + +FL+DGS+F YR ++A ++R DG P +A+ +L+KL+ KE H Sbjct: 12 DPVFLIDGSAFFYRGYHAFRDIARS-DGFPTSALFMIFRLLFKLV----KEQHPRHLVFF 66 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D +FR++IY DYKANR +PE L Q+ + + FG I + EADD IA+ Sbjct: 67 LDGRGPSFRSKIYTDYKANREAMPEPLARQVEPLLDGLRLFGARVIVPEDAEADDGIASL 126 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKIDIE-HVIKKWGIPPEKMVCL 182 ++ V I+ DKDL Q + LYD + K EK+ + + GI P L Sbjct: 127 A-ARFRDRLPVVIVGADKDLKQCLDERVVLYDPSGKAEKLTTKAEFTAESGIEPASWPDL 185 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR------ENILEY 236 QAL GD+ DNIPG+PGIG KTA +L+++ LE++ N +K R+ E++ Y Sbjct: 186 QALVGDTSDNIPGVPGIGIKTALGILRDHPTLEDVRDNLPDLKATVRKKIEPAIEDVFTY 245 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 R+L LRTD+ + L L + L +FL++ EF L Sbjct: 246 -------RELTRLRTDLLPEVSLADTALTPPDAEGLRAFLESYEFRTL 286 >gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] Length = 888 Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 173/514 (33%), Positives = 282/514 (54%), Gaps = 14/514 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 KI HN K V +G S+ G D L +Y++ GR S D+ +++ L Y +E+ Sbjct: 381 KILHNAKGAMRVFAEHGWSVEGVTMDTALAAYLVKPGRRSFDLDALS---LEYLHRELAP 437 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + ++ + D + A+ + +L L +L + ++ P +++ Sbjct: 438 AAEADGQLAFGEDEGAEAEALMIQARAVLDLGEAFESRLEEVGAADLLRDMELPTSALLA 497 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +ME GI D+ L+ + + + + + +G +FNL SPKQL ++LF +L P Sbjct: 498 RMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELALPK 557 Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 +TKTG + T A L + DN + +L R+ +K++ T + L I R+H Sbjct: 558 TKRTKTG-YTTDADALAWLAGQTDNELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIH 614 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759 T ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQIELR++A Sbjct: 615 TTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMA 674 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+++ L + F + D+H A+++F V V +MRR K +++ + YG+S F L+ Sbjct: 675 HLSEDEGLIEAFTSGEDLHTTAASQVFAVEPTAVDAEMRRKIKAMSYGLAYGLSAFGLSQ 734 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL I +EA + YF RF G+ +Y+ + + R GY T+FGRR + ++NS Sbjct: 735 QLNIEAAEARALMDAYFERFGGVRDYLRRAVDEARATGYTATLFGRRRYLPDLNSDNRQR 794 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER A+NAPIQG+AADI + AM++V +L+D L ++MLLQ+HDE+V EV E T Sbjct: 795 REAAERMALNAPIQGTAADIVKIAMLNVDSALKDAGLTSRMLLQVHDEIVLEVAPGERAT 854 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 A +++ M A + LRVPL V++ +W+ Sbjct: 855 AEELVRREMANA----VQLRVPLGVSVGSGPDWE 884 Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 100/254 (39%), Positives = 144/254 (56%), Gaps = 12/254 (4%) Query: 8 FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+DG S YRAF+A P + G P NAI GF +ML N+ ++ +HFAV FD Sbjct: 1 MLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDEAPTHFAVAFD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 T+R++ + +YKANR K P+ Q+ L+ A G + GFEADD+IAT Sbjct: 57 VSRKTWRSQEFTEYKANRSKTPDEFKGQVDLICELLDAMGAARFAVDGFEADDVIATLAT 116 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVCL 182 AE EGF V I++ D+D QLVS TT LY T V E + E V +K+G+ P + Sbjct: 117 QAEAEGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPDF 176 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD DN+PGIPG+G KTAA + ++G+ ++ +K K +N+ ++ E +L Sbjct: 177 AALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVEEVKGKA-GQNLRDHLEAVKL 235 Query: 243 SRKLVML--RTDVP 254 +R+L L R ++P Sbjct: 236 NRRLTELERRVELP 249 >gi|84496608|ref|ZP_00995462.1| putative DNA polymerase I [Janibacter sp. HTCC2649] gi|84383376|gb|EAP99257.1| putative DNA polymerase I [Janibacter sp. HTCC2649] Length = 889 Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 173/516 (33%), Positives = 278/516 (53%), Gaps = 13/516 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 KI H+ K L G+ +RG D L +Y++ + S D+A + + L K Sbjct: 379 KILHDAKGPMHALEARGMPLRGVTMDTALAAYLVKPDQRSFDLADLVVRHLGRELKAEEH 438 Query: 523 SRKSSIPIDKISDSQV-QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + +D +D +V + A+ + +L L + L +L + ++ P++D++ Sbjct: 439 AGGQGL-LDFDTDEEVVGQDAMVRARAVLDLSVPLSEQLEATGGTELLRDIELPLVDILG 497 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LSGEKFNLSSPKQLGDILFTKLKFP 640 ME TGI +D D L + A+ + + + Y+ + G++ NL SPKQL +LF L P Sbjct: 498 AMERTGIAVDTDALSALEADFDAKVREAQLDAYEAIGGDEINLGSPKQLQTVLFETLGLP 557 Query: 641 SGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 +TKTG + T A L + +P ++ +L R +++ T + L + + QR+ Sbjct: 558 KTRRTKTG-YTTDADALTDLYAKTQHPFLEAMLRHRDAMRLRVT-VEGLIKSVAE-DQRI 614 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRIL 758 HT Y TGRL+S +PNLQN+PI+T+ G++IR F+ + L+SADYSQIE+RI+ Sbjct: 615 HTTYIQTIAATGRLSSTDPNLQNVPIRTEAGRRIREVFVVGKGYESLMSADYSQIEMRIM 674 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH++ L + F D+HR V A +FGV E V+ +MR K +++ + YG+S F L+ Sbjct: 675 AHLSGDEGLIEAFRTGEDLHRFVGARVFGVEPEDVTAEMRSKVKAMSYGLAYGLSAFGLS 734 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL I EA + YF RF G+ +Y+ + R GY T+ GRR + ++ S Sbjct: 735 KQLTISTGEAQGLMDEYFARFGGVRDYLREVVGEARATGYTATMLGRRRYLPDLTSDNRQ 794 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 R ER A+NAPIQGSAADI + AM V +L + ++MLLQ+HDELV EV E E Sbjct: 795 RREGAERMALNAPIQGSAADIIKLAMKGVDSALRESGAKSRMLLQVHDELVLEVAEGERD 854 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ M +A + + VPL V++ + ++W + Sbjct: 855 DVEALVRAEMGRA----VEMDVPLDVSVGLGHSWHD 886 Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 115/360 (31%), Positives = 181/360 (50%), Gaps = 27/360 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + L ++DG S YRAF+A P+ + G N + GF +ML +L++ +H AV Sbjct: 2 SRLLVLDGHSLAYRAFFALPVENFSTSTGQHTNGVYGFTSMLINVLRDENP----THVAV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E Y DYKA R P Q+ LVR A I +++ GFEADD+IAT Sbjct: 58 AFDVSRKTFRSEEYADYKATRSATPSEFQGQVALVREVLDALRIKHVQVDGFEADDVIAT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE----KIDIEHVIKKWGIPPEKM 179 T +AE EG V I++ D+D QLV+ L V+ ++D + V K+ + PE+ Sbjct: 118 LTTMAEAEGMEVVIVTGDRDAFQLVTDNVSLIYPVRGVSDVWRMDPKAVEDKYLVAPERY 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DN+PG+PG+G KTAA L YG+L+ ++ +A IK K E++ E+ Sbjct: 178 SDLAALVGETSDNLPGVPGVGPKTAAKWLGLYGDLQGVVAHADEIKGKA-GESLREHLNG 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC----- 294 +R+L L D+ + + + L + + LEF L +R+ T+D Sbjct: 237 VLRNRRLNQLVRDLSLPVTIAELERATWDREEVHKVFDGLEFRVLRDRLFETFDAAPDEA 296 Query: 295 -----------DAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS-QFSSLSDQTSKIN 342 +A ++P + + TTE G+ + R T T+ ++ D + I+ Sbjct: 297 EGGFDLDASVLSSAEVKPWLDEHATTEPTGVHVVGAWGRGTGDVTAVGLATAGDAAAYID 356 >gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1] gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1] Length = 914 Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 191/604 (31%), Positives = 315/604 (52%), Gaps = 37/604 (6%) Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436 + W+ + G S + T + AIA++ D E +I + T Sbjct: 335 VADWLSAHASTGERSGVSVVGTRTPYGGDVTAIAVAAADG--------EGAYIATASATP 386 Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYV 495 +D L + + K H K+ L G + G D L +Y+ Sbjct: 387 EDEKA-----------LGDWLADADQPKALHEAKWAMHALRGRGWVLGGLTSDTALAAYL 435 Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS-QVQEHAIE----NSNVIL 550 + G+ + ++ ++ L Y R+E+ + + D+ QV A E ++ +L Sbjct: 436 VRPGQRTFNLDDLS---LRYLRRELRVEETGEEQLSLLDDADQVDAEAAETEILSARAVL 492 Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610 L L +L + + ++ P+++V++ +E +GI +D L + + + + + Sbjct: 493 DLAAALDTELDNIESTALLSEMELPLLEVLADIEASGIAVDGTHLHDLQSRFAAEVSAAA 552 Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIK 669 E Y + G++ NL SPKQL +LF +L+ P KTKT + T A+ L+ + +P ++ Sbjct: 553 EAAYGVIGKQINLGSPKQLQVVLFDELEMPKTKKTKT-GYTTDAEALQNLFEKTSHPFLE 611 Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729 ++L R +++K T D L + + R+HT ++ TGRL+S EPNLQNIP++TD Sbjct: 612 HLLAHRDATRLKVT-VDGLLKTVAE-DGRIHTTFNQTVAATGRLSSTEPNLQNIPVRTDA 669 Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 G++IR F+ L++ADYSQIE+RI+AH++ L + F D+H V A FGV Sbjct: 670 GRQIRDGFVVGEGYDSLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGARAFGV 729 Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848 IE+V+P++RR K +++ + YG+S F LA QL+I EA ++ YF RF G+ +Y+ + Sbjct: 730 PIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKISTEEAKSQMEAYFARFGGVRDYLHE 789 Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908 R++GY T++GRR + ++ S R + ERAA+NAPIQG+AADI + AMI+V Sbjct: 790 VVEQARKDGYTSTLYGRRRYLPDLTSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQ 849 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 +SL D L ++MLLQ+HDELV EV + E Q++ M A I L VPL V++ Sbjct: 850 RSLRDAGLKSRMLLQVHDELVLEVVDSEREQVEQLVRDKMSSA----IELSVPLDVSVGT 905 Query: 969 SNNW 972 +W Sbjct: 906 GRSW 909 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 111/295 (37%), Positives = 163/295 (55%), Gaps = 20/295 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P + K H G NA+ GF +ML LL++ + SH A F Sbjct: 27 LMLLDGHSLAFRAFYALPAENFKTHSGQVTNAVYGFTSMLINLLRDEQP----SHVAAAF 82 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E +P+YKANR K P+ Q+ + + A GIP + +GFEADDIIAT T Sbjct: 83 DVSRQTFRAEKFPEYKANRSKAPDEFKGQVEITKDVLGALGIPVMAEEGFEADDIIATLT 142 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 AE G+ V +++ D+D +QLV+ T LY K+ D+ V +K+G+ P + Sbjct: 143 TQAEALGYRVLVVTGDRDSLQLVTDGVTVLYP--KKGVSDLTRFTPAAVEEKYGLTPAQY 200 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEY 236 AL GD DN+PGIPG+G KTA ++EYG+L ++ N +++ K REN+ Sbjct: 201 PDFAALRGDPSDNLPGIPGVGEKTATKWIKEYGDLVGLVDNVDKVRGKVGDALRENL--- 257 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 L+R+L + DVP+ + L+L + ++ + LEF L +R+ T Sbjct: 258 -PNVLLNRELTEMVRDVPLPYTPDQLMLAQWDREKIHALFDDLEFKVLRDRLFAT 311 >gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836] gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836] Length = 901 Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 169/513 (32%), Positives = 281/513 (54%), Gaps = 14/513 (2%) Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL--KS 523 H+ K L G ++ G D L +Y+ + S+D+A + ++L R+E+ ++ Sbjct: 395 HDAKGPLLGFLELGWTLAGLTSDTQLSAYLARPDQRSYDLADLTVRYL---RRELRNEEA 451 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 + D + + + + I L L +L + + ++ P+IDV++ M Sbjct: 452 DNGQLSFDDVEGGPAADATMLRARAIADLADTLDAELAKQAGTALLADVELPLIDVIAAM 511 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E GI +D+ L+++ + + + Y++ G++ NL SPKQL +LF +L+ P Sbjct: 512 ERDGIAVDRPYLEKLEERFATGVRDAATSAYEVIGKEINLGSPKQLQVVLFDELQMPKTK 571 Query: 644 KTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 +TKTG + T A L+ + ++P + +L R ++++ T + L I+ R R+HT Sbjct: 572 RTKTG-YTTDADSLQALFEKTEHPFLAYLLAHRDATRLRQT-VEGLLKTISPRDARIHTT 629 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761 ++ TGRL+S +PNLQNIPI+T+ G++IR AF+ + L+SADYSQIE+RI+AH+ Sbjct: 630 FNQTIAATGRLSSTDPNLQNIPIRTEEGRRIREAFVVGEGYESLMSADYSQIEMRIMAHV 689 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 ++ L F + D H + AA +F V +V+ +MR K +N+ + YG+S + L+ QL Sbjct: 690 SEDEGLIDAFNSGEDFHSVTAARVFSVQPGEVTQEMRAKIKAMNYGLAYGLSAYGLSQQL 749 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 +I EA + YF RF G+ +Y+ ++GY ETI GRR + ++ S R Sbjct: 750 KIGVDEAKGLMDEYFERFGGVRDYLRSIVIEAGKSGYTETILGRRRYLPDLTSDNRQRRE 809 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 + ER A+NAPIQGSAAD+ + AM+ V SL L ++MLLQ+HDELVFE+ E Sbjct: 810 MAERMALNAPIQGSAADVIKLAMLKVDASLRSSGLKSRMLLQVHDELVFEIAPGEREALE 869 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++ M A + + VPL V++ V W E Sbjct: 870 ELVRRDMGSA----VEMAVPLDVSVGVGRTWHE 898 Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 163/293 (55%), Gaps = 10/293 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L+DG S YRAFYA P+ + G NA+ GF +ML +L++ + +H V Sbjct: 15 RILLLDGHSLAYRAFYALPVENFSTSTGQHTNAVYGFTSMLINMLRDEQP----THVCVA 70 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E Y +YKA R K P+ Q+ LV+ +A IP EI G+EADDIIAT Sbjct: 71 FDVSRKTFRSEQYTEYKAGRSKSPDEFKGQVSLVKEVLEALRIPTTEIDGWEADDIIATL 130 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMV 180 A +GF V I S D+D QLVS T LY V E ++D V +K+G+ P Sbjct: 131 ATQASDQGFEVLISSGDRDAFQLVSDNVTVLYPKRGVSEIARMDPAAVEEKYGVTPRLYP 190 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L AL G+ DN+PG+PG+G KTAA L ++G+L++++ + IK K E++ E+ Sbjct: 191 DLAALVGEQSDNLPGVPGVGPKTAAKWLNQFGSLDDVVDRVNEIKGKA-GESLREHLADV 249 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 +R++ L D+ + + ++ L+ + + ++ + +LEF L R+ ++ Sbjct: 250 IRNRQINELVRDLTLDVSVDDLVRQPWDRDKVHTLFDSLEFRVLRERLVAEHE 302 >gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 928 Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 174/527 (33%), Positives = 281/527 (53%), Gaps = 12/527 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 L F + K H K L L +G + G D L +Y++ G+ D+A + +K Sbjct: 406 LADFLADPRRPKAVHEYKGALLALGAHGWELGGVVSDTALAAYLVQPGQRRFDLADLCRK 465 Query: 512 WLSYTRKEILKSRKSSIPI--DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569 +L +E + ++ + + + S Q ++ L +L +L H+ Sbjct: 466 YLGRELEEDSSGDQLTLDLGGEDGAGSGRQHLLAVRASATRDLAGVLSAELDKRGGTHLL 525 Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629 ++ P++DV++++E GI D+ L+++ E + E +++ G +FNL SPKQL Sbjct: 526 HEVELPLVDVLARLERAGIAADRPYLEELQGEFAAAGRVAVERAHEIVGREFNLGSPKQL 585 Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSL 688 +LF L P K KTG + T A L + DN + +L R +K+++T + Sbjct: 586 QQVLFEDLGLPRTKKIKTG-YTTDADALAWLASQTDNELPAVLLHHRDQTKLRTTVEGLI 644 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747 + R+HT ++ TGRL+S +PNLQNIP++TD+G++IRRAF+ ++L++ Sbjct: 645 KTVADD--GRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDVGRRIRRAFVVGEGYEELLT 702 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIELRI+AH++ L F + D H +AA+IF V +E+V + R K +++ Sbjct: 703 ADYSQIELRIMAHLSGEQALIDAFNSGYDFHAQMAAQIFDVEVEQVDGEARSRIKAMSYG 762 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 + YG+S + L+ QL I E+ ++ YF F G+ +Y+ R+ GY ETI GRR Sbjct: 763 LAYGLSAYGLSQQLGITPEESKRLMEDYFAEFGGVRDYLNAMVEEARRVGYTETILGRRR 822 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + ++ S R + ER A+NAPIQGSAADI + AM+ V +L + L +++LLQ+HDE Sbjct: 823 YLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLRVDAALTEGGLTSRVLLQVHDE 882 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LV EV E I+ M A +LRVPL V++ NW + Sbjct: 883 LVVEVAPGERAEVENIVAREMSSA----YDLRVPLAVSVGSGQNWHD 925 Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 148/284 (52%), Gaps = 16/284 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAF+A P+ G NA+ GF +ML KLL++ +H AV + Sbjct: 23 LLLLDGHSMAFRAFFALPVDKFGTSTGQSTNAVYGFASMLVKLLRDEEP----THVAVAW 78 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+E Y +YK R P Q+PL + + G+ + GFEADD+IAT Sbjct: 79 DLSGPTFRHEEYAEYKDGRSDTPPEFPSQVPLTQDLMRLIGVANLSAPGFEADDVIATLA 138 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 + + G V I S D+D QLV+ + T LY ++D V K+G+ PE+ Sbjct: 139 HQGGEAGMEVLIASGDRDAFQLVTDSCTVLYPGKSLSDLRRMDPAAVEDKYGVTPERYRD 198 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYAE 238 L AL G+ DN+PG+PG+G KTAA + +YG+L+ ++ +A + K R+++ + Sbjct: 199 LAALVGEKADNLPGVPGVGPKTAAKWITKYGSLDELVAHADELTGKAGQSFRDHLDDVLR 258 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282 RL+R L TDV + + L L + + + + LEF Sbjct: 259 NQRLNR----LATDVELDAEVTALALGEADRTGIDALFDNLEFA 298 >gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018] gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018] Length = 896 Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 188/520 (36%), Positives = 308/520 (59%), Gaps = 31/520 (5%) Query: 467 HNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDS----GRSSHDIASIAQKWLSYTRKEIL 521 N KYD +++ + + I +R + D M++S++L++ G K +S+T +++ Sbjct: 394 QNFKYDYEIIKNNFDIELRLYADTMILSWLLNTNEKVGLDYQIDKYFDHKMISFT--DVV 451 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLW---LLLRPKLIVEKLLHVYERLDKPMID 578 K ++ +D + E+A E++ + L+L+ L + + E++L++ ++ I Sbjct: 452 KKGENFSNVDI---ERACEYAAEDALMTLRLFKKQLEIFKEKEEEEILNLAFEVEFDFIY 508 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V++ ME+ GI++D +LLK+ +KN+ L IY SG +FN++SPKQLG +LF L Sbjct: 509 VLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIYQTSGVEFNINSPKQLGALLFETLG 568 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT-Q 697 P+ KTKTG + T L + ++ +I +L++R+ K++STY + L +K Sbjct: 569 LPTAKKTKTG-YSTDEAVLNGL-INEHEVIPLLLQYREAYKLQSTYIEPLLELGSKSDDN 626 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 R+HT + T TGRL+S PNLQNIP K+D +IR+AFI KL++ DYSQIELR+ Sbjct: 627 RIHTSFLHTGTATGRLSSKNPNLQNIPTKSDSTIQIRKAFIPKDGYKLVAVDYSQIELRL 686 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 LAH ++ L + FEN LDIH A +IFG E+ + + R AK+INF ++YG+ +L Sbjct: 687 LAHFSQDKALVEAFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGSKKL 743 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 L IP EA YI YF F + +Y++ ++F NGYV+T+ R+ +D NS + Sbjct: 744 GETLGIPSKEAKQYIDSYFEAFKSVKDYLKSIEDFAHINGYVKTLLNRKRLFD-FNSANA 802 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE--- 934 ++ R A+N QGSAAD+ + AMI++++ +D++ K+LLQIHDELVFEV + Sbjct: 803 MMKAAYLREAVNTLFQGSAADLIKLAMINIYQKYKDNE-NIKLLLQIHDELVFEVKDEFV 861 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EEIT + + I+ ++ K L VPLKV++ V ++W++ Sbjct: 862 EEITFSIKNIMENIYK-------LNVPLKVSLSVGSSWKD 894 Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 98/258 (37%), Positives = 147/258 (56%), Gaps = 7/258 (2%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D F++R+++A P L + DG P + GF N + N K+ + D Sbjct: 7 IIDTFGFLFRSYFALPPL-KSRDGFPTGLLTGFIN----FISNIGKDFETDYIVFALDAK 61 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFRN++Y YKA RP+ PE LL QLP+ + G G+EADD++A+ A Sbjct: 62 GETFRNKLYSQYKAQRPEAPEDLLTQLPIAISWIEKMGFKTAIRTGYEADDMVASIANDA 121 Query: 129 EKEGFAVTIISTDKDLMQLV--SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +++G V I+S DKDL QL+ + + L+D K+ I+ E I+K+G+ P + Q+L Sbjct: 122 KQKGLEVRIVSHDKDLYQLIDDANSVYLFDPTKKVIINEEKCIEKYGVKPSQFTDYQSLL 181 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPG+ G+G KTA L++E+G LENI N I++K+ +E ++E E A LS+KL Sbjct: 182 GDTADNIPGVKGVGAKTAESLIKEFGTLENIYANIDNIEKKRTKELLIEGKENAILSKKL 241 Query: 247 VMLRTDVPITIPLEHLIL 264 V L D LE IL Sbjct: 242 VTLMNDCHYIDNLEEFIL 259 >gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291] Length = 913 Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 176/513 (34%), Positives = 289/513 (56%), Gaps = 25/513 (4%) Query: 473 KLVLHRYGISMRGF------EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL----- 521 KL +H ++ RG+ D L +Y++ G+ S + +A L Y R+E+ Sbjct: 408 KLAMHD--LAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLA---LRYLRRELRAENPQ 462 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + S + +D Q + I + +L L L +L + ++ P+ V++ Sbjct: 463 QQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLSGMELPVQRVLA 522 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME GI +D DLL ++ ++ + + E Y + G++ NL SPKQL +LF +L+ P Sbjct: 523 GMENAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQINLGSPKQLQAVLFDELQMPK 582 Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 +TKTG + T A L+ + + +P ++++L R +++K T D L N + R+H Sbjct: 583 TKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT-VDGLLNSVAS-DGRIH 639 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759 T ++ TGRL+S EPNLQNIPI+T+ G++ R AF+ +L++ADYSQIE+RI+A Sbjct: 640 TTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRTRDAFVVGDGYAELMTADYSQIEMRIMA 699 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+++ L + F D+H VA+ FGV IE+V+ ++RR K +++ + YG+S + L+ Sbjct: 700 HLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQ 759 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL+I EA + + YF RF G+ +Y+ R++GY T+ GRR + E++S + Sbjct: 760 QLKISTEEAKEQMDAYFARFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQV 819 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ERAA+NAPIQGSAADI + AMI V K++++ L +++LLQ+HDEL+FEV E Sbjct: 820 REAAERAALNAPIQGSAADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQ 879 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + M A L VPL+V++ +W Sbjct: 880 LEALARDKMGGAY----PLDVPLEVSVGYGRSW 908 Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 167/307 (54%), Gaps = 14/307 (4%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 Q L L+DG+S +RAFYA P + K GL NA+ GF ML LL ++ +H Sbjct: 22 QNRPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTH 77 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A FD TFR++ YP+YKANR P+ Q+ + + A GI + GFEADD+ Sbjct: 78 IAAAFDVSRQTFRSDRYPEYKANRSATPDEFHGQIDITKEVLAALGITVLAEPGFEADDL 137 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPP 176 IAT AE EG+ V +++ D+D +QLVS T LY V E + E V++K+G+ P Sbjct: 138 IATLATQAENEGYRVLVVTGDRDSLQLVSDNVTVLYPRKGVSELTRFTPEAVVEKYGLTP 197 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 ++ AL GD DN+PGIPG+G KTA+ + EYG+L+ ++ N ++ K + + E+ Sbjct: 198 QQYPDFAALRGDPSDNLPGIPGVGEKTASKWIAEYGSLQALVDNVDSVRGKV-GDALREH 256 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + +R+L L DVP+ + L L+ + ++ LEF L +R+ T Sbjct: 257 LASVIRNRELTDLIKDVPLAQTPDTLRLQPWDRDQIHRLFDDLEFRVLRDRLFETL---- 312 Query: 297 ANIEPVV 303 A +EP V Sbjct: 313 AAVEPEV 319 >gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2] gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2] Length = 892 Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K L G + G D L SY+L R +H + L+ E + Sbjct: 386 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 445 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + ++ +D D + ++E + + +L ++ ++ + ++ + + Sbjct: 446 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 502 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D D+ + + +E + + +E ++ +GEK NLSSPKQL +LF KL P Sbjct: 503 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562 Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TK+G + T A L + ++P + ++LE R K++ T D L I + RVHT Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y +TGRL+S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ D H + A+ +FGV E VS R K +N+ + YG+S + L+ Q Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ EA + + YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ++ ERAA+NAPIQGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ ++M A ++L VPL V+I V +W Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887 Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 9 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 65 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ +PP + Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A +K K ++ ++ + Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298 +RKL L D+ + + L L + + LEF L +RV AT D D + Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303 Query: 299 IEPVVLDINTT 309 L+I+ T Sbjct: 304 EVDDTLEISGT 314 >gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] Length = 889 Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 185/527 (35%), Positives = 295/527 (55%), Gaps = 45/527 (8%) Query: 465 IGHNIKYDKLVLH-RYGISMRGFEDI---MLMSYVLDSGRSSHDIASIAQKWLSYTR--- 517 IGHN+KYD +LH + + + + +I ML++++ S ++ + ++ +T Sbjct: 388 IGHNLKYDLEILHTNFNFTPKSYHNIKDSMLLAWLYQSDMPC-NLDDLMARYFKHTMIAF 446 Query: 518 KEILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K+I+K + S +PI+ +A E++ QL+ + L+ + L V ++ P Sbjct: 447 KDIIKKGENFSQLPIE-----NAFTYACEDAAACYQLFFKIN-SLLPKSLQEVANNVEFP 500 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 I + ME++G +I+ K + +E+++ L +L + IY L+ ++FNL+SP+QL +LF Sbjct: 501 FIQCLVNMELSGTKINIKYFKNLKSEMTEKLQALSQEIYTLANKRFNLNSPQQLSIVLFE 560 Query: 636 KLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 +L SG KTK+G T + L + +PII +LE+R+L K+ STY + L ++ Sbjct: 561 ELNLQSGKKTKSG-LSTNSSVLNSLR-DSHPIIPKVLEYRELFKLYSTYIEPLIELASQD 618 Query: 696 -TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754 +V+T + T TGRL+S PNLQNIP+KT G++IR FI+ L+S DYSQIE Sbjct: 619 PAHKVYTSFMQTGTSTGRLSSKNPNLQNIPVKTQQGRRIREGFIAQEGHLLLSLDYSQIE 678 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 LR+LAH ++ + + + F DIH A +IFG E+++ + R AK+INF +IYG+ Sbjct: 679 LRLLAHFSQDSAMIEAFHKEADIHLETAKKIFG---EELAQEKRSVAKSINFGLIYGMGA 735 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 +L+ L+I EA YI+ YF FP + ++++ + F+ +NGY T+ GR Sbjct: 736 RKLSETLQINHQEAKSYIQNYFQSFPTVKNFLKEQEEFILKNGYSLTLLGRM-------- 787 Query: 875 PKSSIRNINE-------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 K S NI E R INA QGSAADI + AMI + + KL +K+LLQ+HDE Sbjct: 788 RKFSFENIQEFQKVAFLREGINAIFQGSAADIIKLAMIQITQ----EKLESKLLLQMHDE 843 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+FE P+ T ++ I ME LRVPL+ + + NW E Sbjct: 844 LIFEAPKNIAETEAKKIAQIMESIT----TLRVPLRCGVSLGANWGE 886 Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 98/266 (36%), Positives = 150/266 (56%), Gaps = 10/266 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F++R+++A P L + +G P + GF ++ ++ ++ + + FA+ D Sbjct: 4 LTIIDTFGFLFRSYFALPPL-KNREGFPTGLLTGFAKLILQIYKDYPNDYLV--FAL--D 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 FR I P YKANRP++PE L QL + + G I I G+EADD+IA+ Sbjct: 59 SKEENFRKNIDPLYKANRPEVPEDLKLQLEVAIAWVEKMGFKNISIAGYEADDVIASINK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A +V IIS DKDL QL+ T L+D K+++I E ++K+G+ P + V Q++ Sbjct: 119 CANALEVSVRIISHDKDLYQLIDGDTFLFDPKKKQEIREEQCMEKYGVTPAQFVDYQSIV 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DN+PGI GIG K A+ LL+ YG L+NI N I ++ + + E E A S++L Sbjct: 179 GDSADNVPGIKGIGAKGASNLLKTYGCLDNIYQNLDSIAPERTQTLLKEAKEDAYRSQQL 238 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRL 272 V LR D+ L L+DC PR+ Sbjct: 239 VRLRDDL-----LSDFNLQDCQMPRV 259 >gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu] gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1] gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu] gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 866 Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 183/534 (34%), Positives = 294/534 (55%), Gaps = 27/534 (5%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509 ++ LK FF ++ G+ K D L GI + D++L +++ G A I+ Sbjct: 350 IALLKDFFADKATQFFGYRSKRDNHALRNSGIDVHVTADLVLAEHLVSGG------AKIS 403 Query: 510 QKWL----SYTRKEILKSRK---SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 + L + ++ + S++ S+P+ + Q + S +L + L KL Sbjct: 404 FQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPAQYFGMFASK-LLAIKNYLFVKLEE 462 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 + L ++E +++P+ V+ ME G+ +D L + +++K L + IYDL+G +FN Sbjct: 463 KGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLTGCEFN 522 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 + SPKQL DIL+ +L K K+ T A+ LE + + II IL +R K+ S Sbjct: 523 IKSPKQLSDILYQRLGIEPVDKAKS----TKAEVLEALE-DRHEIIPKILMFRATEKMLS 577 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPP 741 TY +LP IN TQR+H ++ T+TGRL+ +PNLQNIP++++ G+ +R AF + Sbjct: 578 TYVRALPKQINAGTQRIHPTFNQVGTVTGRLSCQDPNLQNIPVRSERGRSLREAFRVKKD 637 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 ++ADYSQIELR LAH+++ L + F + DIH A+++F V +E+V+ Q R A Sbjct: 638 NDYFLAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQERYQA 697 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +NF ++YG + L+ L+I SEA + YF R+P E+I +T +N V T Sbjct: 698 KAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTT 757 Query: 862 IFGR-RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 + GR RI D +SP + R + R A+N IQGSAA++ + AM+++ + L +++ Sbjct: 758 MLGRERILSDWESSPGA--RAASGRLAVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRL 815 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LLQIHDEL+FEVP EE+ ++ ME A + L VPL VN+ + NW E Sbjct: 816 LLQIHDELLFEVPAEELEEMRSLVQEKMESA----MELSVPLVVNVLIGKNWAE 865 Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/312 (34%), Positives = 168/312 (53%), Gaps = 11/312 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LF++D S F++RA++A P + R +G A+ GF L KL+++ E + + +FD Sbjct: 4 LFVLDVSGFVFRAYFALPEM-RGPNGESTQAVFGFIRSLDKLIKDLSPEYVVA----VFD 58 Query: 67 YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P R E+Y DYK+NR + E L Q+ LV+ + GI +E +G EADD+IA+ T Sbjct: 59 GPNNKQSRQELYADYKSNRDRQLEDLPEQIRLVKQYCELLGISCLEEKGVEADDVIASIT 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A +GF V I + DKDL+QLVS +++ KE++I V+ ++G+PPE++ AL Sbjct: 119 KKAVADGFEVCICTADKDLLQLVSSRVSVFNPWKEQEIQYNEVLLQFGVPPEQIADYLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ G G K A LL+E+ ++E ++ N R+ K ++ I + ET LS++ Sbjct: 179 VGDSSDNIPGVSGCGPKKAQALLKEFQSVEELVANTERLS-GKTKQMIEDQKETLLLSKR 237 Query: 246 LVMLRTDVPITIPLEHLIL--EDCNGPRLISFLKALEFTKLINRVATTYDCDAAN--IEP 301 L L D+ + E + + +L +F F L+ T A +P Sbjct: 238 LATLHMDLAFPLTTEEFAFSPQAIDSAQLNTFYLQHGFKALVKHSETATSSIAVQTVTDP 297 Query: 302 VVLDINTTENKG 313 V L + KG Sbjct: 298 VTLKTVLEQLKG 309 >gi|332675191|gb|AEE72007.1| DNA polymerase I [Propionibacterium acnes 266] Length = 931 Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K L G + G D L SY+L R +H + L+ E + Sbjct: 425 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 484 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + ++ +D D + ++E + + +L ++ ++ + ++ + + Sbjct: 485 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 541 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D D+ + + +E + + +E ++ +GEK NLSSPKQL +LF KL P Sbjct: 542 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 601 Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TK+G + T A L + ++P + ++LE R K++ T D L I + RVHT Sbjct: 602 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 658 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y +TGRL+S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH Sbjct: 659 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 718 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ D H + A+ +FGV E VS R K +N+ + YG+S + L+ Q Sbjct: 719 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 778 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ EA + + YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R Sbjct: 779 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 838 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ++ ERAA+NAPIQGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E Sbjct: 839 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 898 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ ++M A ++L VPL V+I V +W Sbjct: 899 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 926 Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 48 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 103 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 104 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 163 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ +PP + Sbjct: 164 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 223 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A +K K ++ ++ + Sbjct: 224 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 282 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298 +RKL L D+ + + L L + + LEF L +RV AT D D + Sbjct: 283 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 342 Query: 299 IEPVVLDINTT 309 L+I+ T Sbjct: 343 EVDDTLEISGT 353 >gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] Length = 897 Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 183/555 (32%), Positives = 292/555 (52%), Gaps = 39/555 (7%) Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSS 502 L+ E + L + +E K H +K+ L G ++ G D L +Y++ G+ + Sbjct: 355 ALSVEDDAALADWLADESRPKAVHEVKWALHALRGRGWTLTGVTSDTALAAYLVRPGQRT 414 Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 ++ +A L Y R+E+ + D Q+ + L+L + + Sbjct: 415 FNLDDLA---LRYLRRELKAEDGAG------DDGQLSLLDDDADAQRAADQLMLSAQAVA 465 Query: 563 E---KLLHVYERLDK---------PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610 E L ER+D P+ V++ +E GI +D D L + + ++ + Sbjct: 466 ELADTLDTELERIDSSALLQEMELPLSFVLADLEAAGIAVDVDHLDSLEGQFAQRVRDAA 525 Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670 E+ Y++ GE+ NL SPKQL ILF KL P KTKTG ++P +K+ Sbjct: 526 ESAYEVIGEQVNLGSPKQLQAILFDKLDMPKTKKTKTGYTTDADALTSLYEKTEHPFLKH 585 Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730 +LE R ++++ T + L + QR+HT ++ TGRL+S +PNLQNIP++T+ G Sbjct: 586 LLEHRDATRLRVT-VEGLQKTVAD-DQRIHTTFNQTVAATGRLSSTDPNLQNIPVRTEAG 643 Query: 731 QKIRRAFISPPT-----------KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 ++IR AF+ P + L++ADYSQIE+RI+AH+++ L + F D+H Sbjct: 644 RQIRHAFVVAPGPVAVGSGNIEFESLMTADYSQIEMRIMAHLSEDEGLIEAFNTGEDLHN 703 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 V + FGV +++V PQMR K +++ + YG+S + LA QL I R EA ++ YF RF Sbjct: 704 FVGSRAFGVPVDQVDPQMRSRVKAMSYGLAYGLSAYGLAAQLGISREEAKQQMEAYFDRF 763 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 G+ +Y+ + R+N Y T+FGRR + ++NS R ER A+NAPIQG+AADI Sbjct: 764 GGVRDYLHRVVEEARRNEYTATLFGRRRYLPDLNSDNFQRRQSAERMALNAPIQGTAADI 823 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + AMI+V K L +L+++MLLQ+HDELV EV E ++ M A I+L Sbjct: 824 IKVAMINVQKRLRTEQLSSRMLLQVHDELVIEVATGEQAAVEALVREEMGGA----IDLS 879 Query: 960 VPLKVNIKVSNNWQE 974 VPL+V++ +W + Sbjct: 880 VPLEVSVGYGRSWDD 894 Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/302 (34%), Positives = 163/302 (53%), Gaps = 20/302 (6%) Query: 8 FLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+DG S YRAF+A P + K + G NA+ GF +ML LL++ +H A FD Sbjct: 1 MLLDGHSLAYRAFFALPAENFKTNTGQSTNAVYGFTSMLINLLRDEEP----THIAAAFD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++++P+YKA R K P+ Q+ L + A GIP + I G+EADDIIAT Sbjct: 57 VSRQTFRSDMFPEYKAQRSKSPDEFRGQVDLTKEVLDAMGIPVMAIDGYEADDIIATLAT 116 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPT-TCLY---DTVKEEKIDIEHVIKKWGIPPEKMVCL 182 A+++G+ V +++ D+D +QLV+ T LY + + + V KK+G+ P + Sbjct: 117 AADQQGYRVFVVTGDRDSLQLVNENITVLYPKRGVSEMTRFTPDEVEKKYGLTPAQYPDF 176 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAET 239 AL GD DN+PGIPG+G KTAA ++EYG+ E ++ A ++ K R N+ Sbjct: 177 AALRGDPSDNLPGIPGVGEKTAAKWIREYGSFEELVNRADEVRGKVGDSLRANLAGVI-- 234 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 ++R+L L D+ + + L L + R+ LEF L +R+ +T ++ Sbjct: 235 --MNRRLTELVRDMQLPAGPDELELHGWDRDRIHQLFDDLEFKVLRDRLFSTL----TSV 288 Query: 300 EP 301 EP Sbjct: 289 EP 290 >gi|215426947|ref|ZP_03424866.1| DNA polymerase I [Mycobacterium tuberculosis T92] gi|215430521|ref|ZP_03428440.1| DNA polymerase I [Mycobacterium tuberculosis EAS054] gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92] gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054] gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92] gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054] Length = 904 Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 169/497 (34%), Positives = 285/497 (57%), Gaps = 11/497 (2%) Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQ 537 G ++ G D L +Y++ G+ S + ++ ++L R E + ++ S+ D +D++ Sbjct: 410 GWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAE 469 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 + I + ++ L L +L + ++ P+ V+++ME GI +D +L + Sbjct: 470 TIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTE 529 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 + ++ + E Y + G++ NL SPKQL +LF +L P +TKTG + T A L Sbjct: 530 LQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADAL 588 Query: 658 EQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + + + +P ++++L R ++++K T D L + R+HT ++ TGRL+S Sbjct: 589 QSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAA-DGRIHTTFNQTIAATGRLSST 646 Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 EPNLQNIPI+TD ++IR AF+ +L++ADYSQIE+RI+AH++ L + F Sbjct: 647 EPNLQNIPIRTDASRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGE 706 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+H VA+ FGV I++V+ ++RR K +++ + YG+S + L+ QL+I EA + + Y Sbjct: 707 DLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAY 766 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F RF G+ +Y+ R++GY T+ GRR + E++S +R ERAA+NAPIQGS Sbjct: 767 FARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGS 826 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AMI V K+L + +LA++MLLQ+HDEL+FE+ E ++ M A Sbjct: 827 AADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAY--- 883 Query: 956 INLRVPLKVNIKVSNNW 972 L VPL+V++ +W Sbjct: 884 -PLDVPLEVSVGYGRSW 899 Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 160/302 (52%), Gaps = 13/302 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG+S +RAFYA P + K GL NA+ GF ML LL ++ +H A F Sbjct: 17 LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 72 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR + YP+YKANR P+ Q+ + + A GI + GFEADD+IAT Sbjct: 73 DVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLA 132 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EG+ V +++ D+D +QLVS T LY V E + E V++K+G+ P + Sbjct: 133 TQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPD 192 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + EYG+L +++ N ++ K A R Sbjct: 193 FAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVR 252 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 +R+L L DVP+ + L L+ + + LEF L +R+ +D AA P Sbjct: 253 -NRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRL---FDTLAAAGGP 308 Query: 302 VV 303 V Sbjct: 309 EV 310 >gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440] gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440] Length = 899 Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 173/520 (33%), Positives = 287/520 (55%), Gaps = 16/520 (3%) Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K L G +++G D + +Y+ + S+D+ +A ++L + L Sbjct: 388 KVLHDSKPAVLAFAARGCAIQGIARDTQIAAYLARPDQRSYDLTDLALRYLHRELRVDLP 447 Query: 523 SRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLI--VEKLLHVYERLDKPMIDV 579 + +D + D + +++ + + L L + +L E+ + ++ P++ V Sbjct: 448 E-TGQLTLDGLGNDGEAEQNLMLRARATLDLADAIDAELSRDGEQSARLMAEVELPLMRV 506 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 ++ ME TGI D L ++ A + + + + Y+ G +FNL SPKQL +ILF +L Sbjct: 507 LAGMERTGIAADTQYLSELEAHFAAEVKAAAQGAYEAVGREFNLGSPKQLQEILFGELGL 566 Query: 640 PSGAKTKTGQWKTTAQDLEQINCGDNP--IIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 P + KTG TT D Q G NP ++ ++L R ++K+K+T D L ++ Sbjct: 567 PKTKRIKTGY--TTDADALQWLYGQNPHPVLGHLLRHRDVAKLKTT-VDGLLKSVSD-DG 622 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELR 756 R+HT ++ TGRL+S EPNLQNIPI+T+ G++IRRAF+ + L++ADYSQIE+R Sbjct: 623 RIHTTFNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGTGYECLLTADYSQIEMR 682 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 I+AH++ L F + LD H A+ +F V +E V+ RR K +N+ + YG+S F Sbjct: 683 IMAHLSADEALIDAFNSGLDFHAATASSVFQVPVEAVTADQRRKIKAMNYGLAYGLSAFG 742 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ QL + EA ++ YF F G+ +Y+++ R++GY E++ GRR + ++ S Sbjct: 743 LSQQLGVTAEEARGLMETYFAGFGGVRDYLQEVVARARRDGYTESVLGRRRYLPDLVSDN 802 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 R + ER A+NAPIQGSAADI + AM++V ++ + L ++MLLQ+HDELVFEV E Sbjct: 803 RQRREMAERMALNAPIQGSAADIIKVAMMNVDAAVREAGLRSRMLLQVHDELVFEVAPGE 862 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 ++ M A L VPL+V++ +W + Sbjct: 863 REALEALVRREMGGA----FPLSVPLEVSVGDGRDWNSAD 898 Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 93/226 (41%), Positives = 128/226 (56%), Gaps = 9/226 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L LVDG S YRAF+A P+ + G P NA+ GF +ML +L++ + +H AV F Sbjct: 8 LLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQP----THIAVAF 63 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D V+FR E Y YKA R + P Q+ LV+ A IPA+E+ G+EADD+IAT T Sbjct: 64 DVSRVSFRTEKYAAYKAGRSETPTDFKGQVSLVKEILAALRIPAVEMAGYEADDVIATLT 123 Query: 126 YIAEKEGFAVTIISTDKDLMQLV-SPTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A + AV I + D+D QLV T LY ++D V K+G+PP+ Sbjct: 124 RQARDQDMAVLITTGDRDAFQLVDDDVTVLYPRKGVSDLARMDPAAVTAKYGVPPQHYRD 183 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 L AL G++ DN+PG+PG+G KTAA + YG +E ++ A IK K Sbjct: 184 LAALVGETSDNLPGVPGVGPKTAAKWITAYGGVEGVVARADEIKGK 229 >gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1] Length = 892 Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K L G + G D L SY+L R +H + L+ E + Sbjct: 386 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 445 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + ++ +D D + ++E + + +L ++ ++ + ++ + + Sbjct: 446 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 502 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D D+ + + +E + + +E ++ +GEK NLSSPKQL +LF KL P Sbjct: 503 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562 Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TK+G + T A L + ++P + ++LE R K++ T D L I + RVHT Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y +TGRL+S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ D H + A+ +FGV E VS R K +N+ + YG+S + L+ Q Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ EA + + YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ++ ERAA+NAPIQGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ ++M A ++L VPL V+I V +W Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887 Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 9 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 65 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ +PP + Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A +K K ++ ++ + Sbjct: 185 LAALMGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298 +RKL L D+ + + L L + + LEF L +RV AT D D + Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303 Query: 299 IEPVVLDINTT 309 L+I+ T Sbjct: 304 EVDDTLEISGT 314 >gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1] Length = 892 Score = 294 bits (752), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K L G + G D L SY+L R +H + L+ E + Sbjct: 386 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 445 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + ++ +D D + ++E + + +L ++ ++ + ++ + + Sbjct: 446 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 502 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D D+ + + +E + + +E ++ +GEK NLSSPKQL +LF KL P Sbjct: 503 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562 Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TK+G + T A L + ++P + ++LE R K++ T D L I + RVHT Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y +TGRL+S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ D H + A+ +FGV E VS R K +N+ + YG+S + L+ Q Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ EA + + YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ++ ERAA+NAPIQGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ ++M A ++L VPL V+I V +W Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887 Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 9 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 65 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ +PP + Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A +K K ++ ++ + Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298 +RKL L D+ + + L L + + LEF L +RV AT D D + Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRVLATESDADGVD 303 Query: 299 IEPVVLDINTT 309 L+I+ T Sbjct: 304 EVDDTLEISGT 314 >gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74] gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74] Length = 918 Score = 293 bits (751), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 178/520 (34%), Positives = 287/520 (55%), Gaps = 26/520 (5%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 KI H+ K V +G+S+ G D L +Y++ GR + + +++ L Y +E++ Sbjct: 411 KIMHDAKGLMRVFGEHGMSVAGVSMDTALGAYLVKPGRRTFALGALS---LEYLGRELVP 467 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLR---PKLIVEKLLHVYERLDKPMID 578 +++S + +D + Q + + IL L L P++ E LL ++ P Sbjct: 468 AQESDGQLAFGADDESQARTLMVEARTILDLGTALTARLPEVGAEGLL---TDIELPTSA 524 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 ++++ME GI+ D+ L+++ + + + + G +FNL SPKQL ++LF +L Sbjct: 525 LLARMERAGIKADRAHLEEMERQFAGAVEQAVREAHAAVGHEFNLGSPKQLQEVLFGELN 584 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDN----PIIKNILEWRQLSKIKSTYADSLPNHINK 694 P KTKTG + T A L + G P+I +L R+ +K++ST + L I Sbjct: 585 LPKTRKTKTG-YTTDADSLAWL-AGQTEHELPVI--MLRHREQAKLRSTV-EGLIKSIAP 639 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753 R+HT ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQI Sbjct: 640 -DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFEALMTADYSQI 698 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELR++AH+++ L F + D+HR VA +FGV V +MRR K +++ + YG+S Sbjct: 699 ELRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFGVEPAAVDAEMRRKIKAMSYGLAYGLS 758 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 F L+ QL I EA + YF RF G+ +Y+ + R GY T+ GRR + ++N Sbjct: 759 AFGLSQQLGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLPDLN 818 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S R ER A+NAPIQG+AADI + AM++V ++L + +L ++MLLQ+HDE+V E+ Sbjct: 819 SDNRQRREAAERMALNAPIQGTAADIVKIAMLNVDRALREAELTSRMLLQVHDEIVLELA 878 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E +I+ M A LR PL V++ V +W+ Sbjct: 879 PGERAPVEEILRREMAAAA----ELRAPLTVSVGVGRDWE 914 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 99/254 (38%), Positives = 142/254 (55%), Gaps = 10/254 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NAI GF +ML N+ ++ +HFAV F Sbjct: 27 LMLMDGHSLAYRAFFALPAENFTTSTGQPTNAIYGFASML----ANTLRDEQPTHFAVAF 82 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R E + +YKANR K P+ Q+ L+ ++GFEADDIIAT Sbjct: 83 DVSRKTWRAEEFTEYKANRAKTPDEFRGQVELIGELLDTMHADRFAVEGFEADDIIATLA 142 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE GF V I++ D+D QLVS TT LY T V E + E V +++G+ P + Sbjct: 143 TQAEAAGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRYTPEKVEERYGLTPAQYPD 202 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ A +K K +N ++ + + Sbjct: 203 FAALRGDPSDNLPGIPGVGEKTAAKWITQFGSFAELVERAEEVKGKA-GQNFRDHLDAVK 261 Query: 242 LSRKLVMLRTDVPI 255 L+R+L + DVP+ Sbjct: 262 LNRRLTEMVRDVPL 275 >gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] Length = 915 Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K L G + G D L SY+L R +H + L+ E + Sbjct: 409 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 468 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + ++ +D D + ++E + + +L ++ ++ + ++ + + Sbjct: 469 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 525 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D D+ + + +E + + +E ++ +GEK NLSSPKQL +LF KL P Sbjct: 526 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 585 Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TK+G + T A L + ++P + ++LE R K++ T D L I + RVHT Sbjct: 586 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 642 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y +TGRL+S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH Sbjct: 643 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 702 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ D H + A+ +FGV E VS R K +N+ + YG+S + L+ Q Sbjct: 703 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 762 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ EA + + YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R Sbjct: 763 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 822 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ++ ERAA+NAPIQGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E Sbjct: 823 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 882 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ ++M A ++L VPL V+I V +W Sbjct: 883 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 910 Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 32 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 87 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 88 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 147 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ +PP + Sbjct: 148 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 207 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A +K K ++ ++ + Sbjct: 208 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 266 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298 +RKL L D+ + + L L + + LEF L +RV AT D D + Sbjct: 267 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 326 Query: 299 IEPVVLDINTT 309 L+I+ T Sbjct: 327 EVDDTLEISGT 337 >gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] Length = 910 Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K L G + G D L SY+L R +H + L+ E + Sbjct: 404 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 463 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + ++ +D D + ++E + + +L ++ ++ + ++ + + Sbjct: 464 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 520 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D D+ + + +E + + +E ++ +GEK NLSSPKQL +LF KL P Sbjct: 521 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 580 Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TK+G + T A L + ++P + ++LE R K++ T D L I + RVHT Sbjct: 581 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 637 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y +TGRL+S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH Sbjct: 638 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 697 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ D H + A+ +FGV E VS R K +N+ + YG+S + L+ Q Sbjct: 698 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 757 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ EA + + YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R Sbjct: 758 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 817 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ++ ERAA+NAPIQGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E Sbjct: 818 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 877 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ ++M A ++L VPL V+I V +W Sbjct: 878 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 905 Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 27 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 82 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 83 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 142 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ +PP + Sbjct: 143 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 202 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A +K K ++ ++ + Sbjct: 203 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 261 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298 +RKL L D+ + + L L + + LEF L +RV AT D D + Sbjct: 262 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 321 Query: 299 IEPVVLDINTT 309 L+I+ T Sbjct: 322 EVDDTLEISGT 332 >gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1] gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2] gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1] gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1] gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2] gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1] gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1] Length = 892 Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K L G + G D L SY+L R +H + L+ E + Sbjct: 386 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 445 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + ++ +D D + ++E + + +L ++ ++ + ++ + + Sbjct: 446 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 502 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D D+ + + +E + + +E ++ +GEK NLSSPKQL +LF KL P Sbjct: 503 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562 Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TK+G + T A L + ++P + ++LE R K++ T D L I + RVHT Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y +TGRL+S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ D H + A+ +FGV E VS R K +N+ + YG+S + L+ Q Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ EA + + YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ++ ERAA+NAPIQGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ ++M A ++L VPL V+I V +W Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887 Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 104/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 9 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 65 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ +PP + Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A ++ K ++ ++ + Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVRGKA-GQSFRDHLDDVI 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298 +RKL L D+ + + L L + + LEF L +RV AT D D + Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303 Query: 299 IEPVVLDINTT 309 L+I+ T Sbjct: 304 EVDDTLEISGT 314 >gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638] gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638] Length = 904 Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 165/444 (37%), Positives = 253/444 (56%), Gaps = 6/444 (1%) Query: 531 DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQI 590 +++ D+ + H L L +L P++ L + L+ P+I V++ ME GI I Sbjct: 465 EELPDAVDEVHPDAQGMAALALMHVLGPRIKSAGLDELTANLEIPLIPVLADMEKAGITI 524 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW 650 D D E+++ + L I++ +GE FN+ S +Q+ +LF L G KT G Sbjct: 525 DLDAFADFLTEVNERINELTRVIHERAGEPFNIRSSQQMATVLFDSLGLKPGGKTPKGAL 584 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMT 710 T LE+++ G + II +ILE+R++ K++STY + LP +N R+HT ++ +T T Sbjct: 585 STANSVLEKLS-GQHEIITDILEYRKMEKLRSTYLEPLPKLVNA-NGRIHTNFNQLATAT 642 Query: 711 GRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 GRL+S PNLQNIPI+ D G+++R F + +L +ADYSQ+ELR+LAH + L Sbjct: 643 GRLSSSGPNLQNIPIRGDQGKRMRACFTAGEGLRLAAADYSQVELRVLAHFSGDPALVSA 702 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 FE+ DIH AA +F + V+ RR+AKTINF +IYG+ P +L+ +L I +EA + Sbjct: 703 FEHDEDIHSRTAALLFDRDPADVTSDERRNAKTINFGLIYGMGPQKLSRELGIKINEAKE 762 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I +YF + + E+ + R+ GYV T+ GRR E++S I + R AIN Sbjct: 763 FIAKYFEKLDVLKEFYDSVVEQGREKGYVTTLSGRRRLLPELHSTSPQILSQARRQAINT 822 Query: 891 PIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEK 950 IQGSAADI + AMI V + E L +++LQIHDEL+ E PEE I +++ M+ Sbjct: 823 VIQGSAADIIKMAMIKVADNAEIKHLGGRLILQIHDELLVEGPEENIEEIGKLLQKDMQT 882 Query: 951 ACLPKINLRVPLKVNIKVSNNWQE 974 L VPLKV++ + NW + Sbjct: 883 VA----TLAVPLKVDLGLGRNWAQ 902 Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 122/387 (31%), Positives = 185/387 (47%), Gaps = 33/387 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+DGS+F YR F+A P L R DG+P NA+ L K++ KE + I D Sbjct: 14 LYLIDGSAFFYRGFHAYPDLKRS-DGVPTNAMFFVLRTLLKVI----KEEKPKYLVFILD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT- 125 FR+E+Y YKA RP +P+ L Q+ ++ A G+P I +G EADD IA+ Sbjct: 69 GKGKNFRHELYDQYKAQRPPMPDDLRSQIEPLKEALNVIGVPLIVSEGEEADDCIASLAA 128 Query: 126 -YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEKI-DIEHVIKKWGIPPEKMVCL 182 Y +E+ V I+ DKDL Q + ++D K+EKI + + + PE+ Sbjct: 129 RYKSER---PVVILGADKDLKQCLDENVFMWDPAGKKEKITSLADFREDTKLEPEQWADF 185 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK---QKKRR---ENILEY 236 QAL GDS DNIPG+PG+G TA ++ EY LE+I N ++K QKK + ENI Y Sbjct: 186 QALVGDSADNIPGVPGVGKVTATKIMAEYPTLEDIRDNYDKLKPAIQKKMKDELENIFVY 245 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 R+L +R L+ L +G R F+ EF L+ V + + + Sbjct: 246 -------RELTRMRLGSCSDCDLKQCELRSVDGDRAAEFMTTYEFRSLVRDVKSLFSATS 298 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTP------QKL 350 + P + + ++ E D + K + +S Q S + E TP +L Sbjct: 299 GSGVPAGNSKKSASGQA-SLFGEEDTTSAAKPKKSASGGGQFS-LFGEATPAPAAPENRL 356 Query: 351 FLERLQKLSQYPINNDSYTKIVNTKDI 377 L+++ S+ P D +V +I Sbjct: 357 ELKKISSASELPDFTDKEVGLVREGNI 383 >gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1] gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1] gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2] gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1] gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2] gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1] gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2] gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1] gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1] gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1] gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4] gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1] gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3] gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3] gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1] gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1] gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1] gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2] gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1] gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1] gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2] gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1] gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2] gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3] gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2] gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3] gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1] gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1] gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1] gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2] gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3] gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2] gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2] gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1] gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3] gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2] gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1] gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1] gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2] gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1] Length = 892 Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 172/512 (33%), Positives = 285/512 (55%), Gaps = 13/512 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K L G + G D L SY+L R +H + L+ E + Sbjct: 386 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 445 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + ++ +D D + ++E + + +L ++ ++ + ++ + + Sbjct: 446 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 502 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D D+ + + +E + + +E ++ +GEK NLSSPKQL +LF KL P Sbjct: 503 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562 Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TK+G + T A L + ++P + ++LE R K++ T D L I + RVHT Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y +TGRL+S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ D H + A+ +FGV E VS R K +N+ + YG+S + L+ Q Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ EA + + YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ++ ERAA+NAPIQGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ ++M A ++L VPL V+I V +W Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887 Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 9 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 65 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ +PP + Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A +K K ++ ++ + Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298 +RKL L D+ + + L L + + LEF L +RV AT D D + Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303 Query: 299 IEPVVLDINTT 309 L+I+ T Sbjct: 304 EVDDTLEISGT 314 >gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202] gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202] Length = 931 Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 153/392 (39%), Positives = 239/392 (60%), Gaps = 9/392 (2%) Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D D+ + + +E + + +E ++ +GEK NLSSPKQL +LF KL P Sbjct: 542 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 601 Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TK+G + T A L + ++P + ++LE R K++ T D L I + RVHT Sbjct: 602 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 658 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y +TGRL+S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH Sbjct: 659 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 718 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ D H + A+ +FGV E VS R K +N+ + YG+S + L+ Q Sbjct: 719 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 778 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ EA + + YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R Sbjct: 779 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 838 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ++ ERAA+NAPIQGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E Sbjct: 839 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 898 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ ++M A ++L VPL V+I V +W Sbjct: 899 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 926 Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 48 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 103 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 104 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 163 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ +PP + Sbjct: 164 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 223 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A +K K ++ ++ + Sbjct: 224 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 282 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298 +RKL L D+ + + L L + + LEF L +RV AT D D + Sbjct: 283 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 342 Query: 299 IEPVVLDINTT 309 L+I+ T Sbjct: 343 EVDDTLEISGT 353 >gi|283853836|ref|ZP_06371055.1| DNA polymerase I [Desulfovibrio sp. FW1012B] gi|283570771|gb|EFC18812.1| DNA polymerase I [Desulfovibrio sp. FW1012B] Length = 878 Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 153/392 (39%), Positives = 223/392 (56%), Gaps = 6/392 (1%) Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI ID L AE++ L LE I +L+GE FN S +QLG++L+ ++ Sbjct: 491 MERIGIGIDTAALAAFGAEVATELARLEGAIRELAGEGFNPRSSRQLGEVLYGRMGLKPR 550 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KT G T+ + LE++ G+NP++ ILE+R+L K++STY D LP + R+HT Sbjct: 551 GKTPGGAASTSQEALERL-AGENPLVDRILEFRKLEKLRSTYLDPLP-RLADAAGRIHTT 608 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 ++ +T TGRL+S PNLQNIPI+ LG+++R F++ KKL++ADYSQIELR+LAH++ Sbjct: 609 FNNLATATGRLSSSNPNLQNIPIRGTLGRRMRECFVAAAGKKLVAADYSQIELRVLAHLS 668 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 L FE DIH AA +F + P RR AKTINF ++YG+ P +L+ L Sbjct: 669 GEPALLAAFEQGADIHARTAAILFDKAEADIRPDERRQAKTINFGLLYGMGPQKLSRDLG 728 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 I A +I++YF R G+ + + + + G+V T+ GRR EI+S S + + Sbjct: 729 IKLDAAKAFIEKYFERLSGLSTFYQGIVDTAKAQGFVTTLAGRRRLLPEIHSANSQLASQ 788 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 R AIN +QG AADI + AM++ H E L M+LQ+HDEL+ E PE A+Q Sbjct: 789 ARRQAINTVVQGGAADIIKMAMLAAHNDPELAGLGAAMVLQVHDELLLETPE----AAAQ 844 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + L VPL V+ W + Sbjct: 845 AAGERLSALMCGVVALAVPLAVDWGAGQTWGQ 876 Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 105/291 (36%), Positives = 151/291 (51%), Gaps = 13/291 (4%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 +++ +FLVDG++F YR ++A LSR DG P +A+ +L+KLL KE SH Sbjct: 10 EQSPVFLVDGTAFFYRGYHAFGDLSRS-DGFPTSALFMIFRLLFKLL----KEQEPSHLV 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 D FR++IY +YKANR +PE L Q+ +R + G+P I + EADD IA Sbjct: 65 FFLDGRGPNFRSKIYSNYKANRDAMPEPLARQVEPLRQGLRLLGVPVIVPEDAEADDGIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKIDIEHVI-KKWGIPPEKMV 180 T ++ V I+ DKDL Q + LYD + K EK+ + + GI P Sbjct: 125 TLA-ARFRDIRPVVIVGADKDLKQCLDDRVVLYDPSGKAEKLTTKAAFTAECGIEPASWP 183 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAE 238 LQAL GD+ DNIPG+PG+G KTA +L+ LE + ++A + +K+ E LE Sbjct: 184 DLQALVGDTSDNIPGVPGVGPKTALAILRTLPTLEAVRDNLDAVPVSARKKIEPFLEAVF 243 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 T R L LRTD+ L +L + L +FL++ E L A Sbjct: 244 T---YRALTRLRTDILPDTALADALLAKPDTAGLRAFLESYELRTLAREAA 291 >gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1] Length = 890 Score = 293 bits (750), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 153/392 (39%), Positives = 239/392 (60%), Gaps = 9/392 (2%) Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D D+ + + +E + + +E ++ +GEK NLSSPKQL +LF KL P Sbjct: 501 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 560 Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TK+G + T A L + ++P + ++LE R K++ T D L I + RVHT Sbjct: 561 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 617 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y +TGRL+S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH Sbjct: 618 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 677 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ D H + A+ +FGV E VS R K +N+ + YG+S + L+ Q Sbjct: 678 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 737 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ EA + + YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R Sbjct: 738 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 797 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ++ ERAA+NAPIQGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E Sbjct: 798 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 857 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ ++M A ++L VPL V+I V +W Sbjct: 858 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 885 Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 104/309 (33%), Positives = 158/309 (51%), Gaps = 11/309 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 9 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 65 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ +PP + Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A +K K ++ ++ + Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV-ATTYDCDAANIE 300 +RKL L D+ + + L L + + LEF L +RV A + DA ++ Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303 Query: 301 PVVLDINTT 309 L+I+ T Sbjct: 304 DDTLEISGT 312 >gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX] gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13] gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT] gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT] gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276] gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s] gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX] gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13] gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT] gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT] gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768] gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222] gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074] gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301] Length = 866 Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 183/534 (34%), Positives = 294/534 (55%), Gaps = 27/534 (5%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509 ++ LK FF ++ G+ K D L GI + D++L +++ G A I+ Sbjct: 350 IALLKDFFADKATQFFGYRSKRDNHALRNSGIDVHVTADLVLAEHLVSGG------AKIS 403 Query: 510 QKWL----SYTRKEILKSRK---SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 + L + ++ + S++ S+P+ + +Q + S +L + L KL Sbjct: 404 FQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPLQYFGMLASK-LLAIKNYLFVKLEE 462 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 + L ++E +++P+ V+ ME G+ +D L + +++K L + IYDL G +FN Sbjct: 463 KGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLVGCEFN 522 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 + SPKQL DIL+ +L K K+ T A+ LE + + II IL +R K+ S Sbjct: 523 IKSPKQLSDILYQRLGIEPVDKAKS----TKAEVLEALE-DRHEIIPKILMFRATEKMLS 577 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPP 741 TY +LP IN TQR+H ++ T+TGRL+ +PNLQNIP++++ G+ +R AF + Sbjct: 578 TYVRALPKQINAGTQRIHPTFNQVGTVTGRLSCQDPNLQNIPVRSERGRSLREAFRVKKD 637 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 ++ADYSQIELR LAH+++ L + F + DIH A+++F V +E+V+ Q R A Sbjct: 638 NDYFLAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQA 697 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +NF ++YG + L+ L+I SEA + YF R+P E+I +T +N V T Sbjct: 698 KAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTT 757 Query: 862 IFGR-RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 + GR RI D +SP + R + R A+N IQGSAA++ + AM+++ + L +++ Sbjct: 758 MLGRERILSDWESSPGA--RAASGRLAVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRL 815 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LLQIHDEL+FEVP EE+ ++ ME A + L VPL VN+ + NW E Sbjct: 816 LLQIHDELLFEVPAEELEEMRSLVQEKMESA----MELSVPLVVNVLIGKNWAE 865 Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/312 (33%), Positives = 167/312 (53%), Gaps = 11/312 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LF++D S F++RA++A P + R +G A+ GF L KL+++ E + + +FD Sbjct: 4 LFVLDVSGFVFRAYFALPEM-RGPNGESTQAVFGFIRSLDKLIKDLSPEYVVA----VFD 58 Query: 67 YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P R E+Y DYK+NR + L Q+ LV+ + GI +E +G EADD+IA+ T Sbjct: 59 GPNNKQSRQELYADYKSNRDRQLGDLPEQIRLVKQYCELLGISCLEEKGVEADDVIASIT 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A +GF V I + DKDL+QLVS +++ KE++I V+ ++G+PPE++ AL Sbjct: 119 KKAVADGFEVCICTADKDLLQLVSSRVSVFNPWKEQEIQYNEVLSQFGVPPEQIADYLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ G G K A LL+E+ ++E ++ N R+ K ++ I + ET LS++ Sbjct: 179 VGDSSDNIPGVSGCGPKKAQALLKEFQSVEELVANTERLS-GKTKQMIEDQKETLLLSKR 237 Query: 246 LVMLRTDVPITIPLEHLIL--EDCNGPRLISFLKALEFTKLINRVATTYDCDAAN--IEP 301 L L D+ + E + + +L +F F L+ T A +P Sbjct: 238 LATLHMDLAFPLTTEEFAFSPQAIDSAQLNTFYLQHGFKALVKHAETATSSIAVQTVTDP 297 Query: 302 VVLDINTTENKG 313 V L + KG Sbjct: 298 VTLKTVLEQLKG 309 >gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1] gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1] Length = 892 Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 153/392 (39%), Positives = 239/392 (60%), Gaps = 9/392 (2%) Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D D+ + + +E + + +E ++ +GEK NLSSPKQL +LF KL P Sbjct: 503 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562 Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TK+G + T A L + ++P + ++LE R K++ T D L I + RVHT Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y +TGRL+S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ D H + A+ +FGV E VS R K +N+ + YG+S + L+ Q Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ EA + + YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ++ ERAA+NAPIQGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ ++M A ++L VPL V+I V +W Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887 Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 9 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 65 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ +PP + Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A +K K ++ ++ + Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298 +RKL L D+ + + L L + + LEF L +RV AT D D + Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303 Query: 299 IEPVVLDINTT 309 L+I+ T Sbjct: 304 EVDDTLEISGT 314 >gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC] gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC] Length = 868 Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 183/534 (34%), Positives = 294/534 (55%), Gaps = 27/534 (5%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509 ++ LK FF ++ G+ K D L GI + D++L +++ G A I+ Sbjct: 352 IALLKDFFADKATQFFGYRSKRDNHALRNSGIDVHVTADLVLAEHLVSGG------AKIS 405 Query: 510 QKWL----SYTRKEILKSRK---SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 + L + ++ + S++ S+P+ + +Q + S +L + L KL Sbjct: 406 FQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPLQYFGMLASK-LLAIKNYLFVKLEE 464 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 + L ++E +++P+ V+ ME G+ +D L + +++K L + IYDL G +FN Sbjct: 465 KGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLVGCEFN 524 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 + SPKQL DIL+ +L K K+ T A+ LE + + II IL +R K+ S Sbjct: 525 IKSPKQLSDILYQRLGIEPVDKAKS----TKAEVLEALE-DRHEIIPKILMFRATEKMLS 579 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPP 741 TY +LP IN TQR+H ++ T+TGRL+ +PNLQNIP++++ G+ +R AF + Sbjct: 580 TYVRALPKQINAGTQRIHPTFNQVGTVTGRLSCQDPNLQNIPVRSERGRSLREAFRVKKD 639 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 ++ADYSQIELR LAH+++ L + F + DIH A+++F V +E+V+ Q R A Sbjct: 640 NDYFLAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQA 699 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +NF ++YG + L+ L+I SEA + YF R+P E+I +T +N V T Sbjct: 700 KAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTT 759 Query: 862 IFGR-RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 + GR RI D +SP + R + R A+N IQGSAA++ + AM+++ + L +++ Sbjct: 760 MLGRERILSDWESSPGA--RAASGRLAVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRL 817 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LLQIHDEL+FEVP EE+ ++ ME A + L VPL VN+ + NW E Sbjct: 818 LLQIHDELLFEVPAEELEEMRSLVQEKMESA----MELSVPLVVNVLIGKNWAE 867 Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/312 (33%), Positives = 167/312 (53%), Gaps = 11/312 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LF++D S F++RA++A P + R +G A+ GF L KL+++ E + + +FD Sbjct: 6 LFVLDVSGFVFRAYFALPEM-RGPNGESTQAVFGFIRSLDKLIKDLSPEYVVA----VFD 60 Query: 67 YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P R E+Y DYK+NR + L Q+ LV+ + GI +E +G EADD+IA+ T Sbjct: 61 GPNNKQSRQELYADYKSNRDRQLGDLPEQIRLVKQYCELLGISCLEEKGVEADDVIASIT 120 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A +GF V I + DKDL+QLVS +++ KE++I V+ ++G+PPE++ AL Sbjct: 121 KKAVADGFEVCICTADKDLLQLVSSRVSVFNPWKEQEIQYNEVLSQFGVPPEQIADYLAL 180 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ G G K A LL+E+ ++E ++ N R+ K ++ I + ET LS++ Sbjct: 181 VGDSSDNIPGVSGCGPKKAQALLKEFQSVEELVANTERLS-GKTKQMIEDQKETLLLSKR 239 Query: 246 LVMLRTDVPITIPLEHLIL--EDCNGPRLISFLKALEFTKLINRVATTYDCDAAN--IEP 301 L L D+ + E + + +L +F F L+ T A +P Sbjct: 240 LATLHMDLAFPLTTEEFAFSPQAIDSAQLNTFYLQHGFKALVKHAETATSSIAVQTVTDP 299 Query: 302 VVLDINTTENKG 313 V L + KG Sbjct: 300 VTLKTVLEQLKG 311 >gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205] gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205] Length = 899 Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 173/528 (32%), Positives = 294/528 (55%), Gaps = 14/528 (2%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509 S L + +E K+ H+ K L +G S+ G D + +Y+ + S+D+ +A Sbjct: 375 SALAGWLADETRPKVLHDSKPAVLAFAAHGWSIEGITRDTQIAAYLARPDQRSYDLVDLA 434 Query: 510 QKWLSYTRKEILKSRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLI--VEKLL 566 ++L + + + + + D + +++ + + L L + +L E+ Sbjct: 435 LRYL-HRELRVDTPDTGQLTFEGLGNDGEAEQNLMLRARATLDLADAIDAELSRDGEQSS 493 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 + ++ P++ V++ ME TGI D L ++ A+ + + + + Y+ G +FNL SP Sbjct: 494 RLMAGVELPLMRVLASMERTGIAADTQYLSELEAQFAAEVKAAAQGAYEAVGREFNLGSP 553 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYA 685 KQL +ILF +L P + KTG + T A L+ ++ + +P++ ++L R ++K+K+T Sbjct: 554 KQLQEILFVELGLPKTKRIKTG-YTTDADALQWLHAQNPHPVLGHLLRHRDVAKLKTT-V 611 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 D L ++ R+HT ++ TGRL+S EPNLQNIPI+T+ G++IRRAF+ + Sbjct: 612 DGLLKSVSD-DGRIHTTFNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGEGYEC 670 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L++ADYSQIE+RI+AH++ L F + D H A+ +F V +E+V+ RR K + Sbjct: 671 LLTADYSQIEMRIMAHLSADDVLIDAFNSGRDFHAATASSVFQVPVEEVTTDQRRKIKAM 730 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 N+ + YG+S F L+ QL + EA ++ YF F G+ +Y+++ R +GY ET+ G Sbjct: 731 NYGLAYGLSAFGLSQQLGVTAEEARGLMEIYFAGFGGVRDYLQEVVARARHDGYTETVLG 790 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR + ++ S R + ER A+NAPIQGSAADI + AM+ V ++ D L ++MLLQ+ Sbjct: 791 RRRYLPDLVSDNRQRREMAERMALNAPIQGSAADIIKVAMMRVDSAVHDAGLRSRMLLQV 850 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDELVFEV E +++ M +A L VPL+V++ +W Sbjct: 851 HDELVFEVAPGERERLEELVRREMGEAY----PLSVPLEVSVGDGRDW 894 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 130/226 (57%), Gaps = 9/226 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L LVDG S YRAF+A P+ + G P NA+ GF +ML +L++ R +H AV F Sbjct: 8 LLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDERP----THIAVAF 63 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR E Y YKA R + P Q+ LV+ A +PA+E++G+EADD+IAT T Sbjct: 64 DVSRRSFRTEKYAAYKAGRSETPADFKGQVSLVKEILAALRVPAVELEGYEADDVIATLT 123 Query: 126 YIAEKEGFAVTIISTDKDLMQLV-SPTTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A ++G +V I + D+D QLV T LY ++D V K+G+PPE Sbjct: 124 RQAREQGMSVLITTGDRDAFQLVDDDVTVLYPRKGVSDLARMDPAAVTAKYGVPPELYRD 183 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 L AL G++ DN+PGIPG+G KTAA + YG +E I+ A IK K Sbjct: 184 LAALVGETSDNLPGIPGVGPKTAAKWITTYGGVEGIVARADEIKGK 229 >gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70] gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s] gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923] gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2] gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150] gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023] Length = 866 Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 183/534 (34%), Positives = 293/534 (54%), Gaps = 27/534 (5%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIA 509 ++ LK FF ++ G+ K D L GI + D++L +++ G A I+ Sbjct: 350 IALLKDFFADKATQFFGYRSKRDNHALRNSGIDVHVTADLVLAEHLVSGG------AKIS 403 Query: 510 QKWL----SYTRKEILKSRK---SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 + L + ++ + S++ S+P+ + Q + S +L + L KL Sbjct: 404 FQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPSQYFGMFASK-LLAIKNYLFVKLEE 462 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 + L ++E +++P+ V+ ME G+ +D L + +++K L + IYDL G +FN Sbjct: 463 KGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLVGCEFN 522 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 + SPKQL DIL+ +L K K+ T A+ LE + + II IL +R K+ S Sbjct: 523 IKSPKQLSDILYQRLGIEPVDKAKS----TKAEVLEALE-DRHEIIPKILMFRATEKMLS 577 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPP 741 TY +LP IN TQR+H ++ T+TGRL+ +PNLQNIP++++ G+ +R AF + Sbjct: 578 TYVRALPKQINAGTQRIHPTFNQVGTVTGRLSCQDPNLQNIPVRSERGRSLREAFRVKKD 637 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 ++ADYSQIELR LAH+++ L + F + DIH A+++F V +E+V+ Q R A Sbjct: 638 NDYFLAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQA 697 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +NF ++YG + L+ L+I SEA + YF R+P E+I +T +N V T Sbjct: 698 KAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTT 757 Query: 862 IFGR-RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 + GR RI D +SP + R + R A+N IQGSAA++ + AM+++ + L +++ Sbjct: 758 MLGRERILSDWESSPGA--RAASGRLAVNTRIQGSAAELIKLAMLNISDEMRSRGLKSRL 815 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LLQIHDEL+FEVP EE+ ++ ME A + L VPL VN+ + NW E Sbjct: 816 LLQIHDELLFEVPAEELEEMRSLVQEKMESA----MELSVPLVVNVLIGKNWAE 865 Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 109/312 (34%), Positives = 170/312 (54%), Gaps = 11/312 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LF++D S F++RA++A P + R +G A+ GF L KL+++ E + + +FD Sbjct: 4 LFVLDVSGFVFRAYFALPEM-RGPNGESTQAVFGFIRSLDKLIKDLSPEYVVA----VFD 58 Query: 67 YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P R E+Y DYK+NR + E L Q+ LV+ + GI +E +G EADD+IA+ T Sbjct: 59 GPNNKQSRQELYADYKSNRDRQLEDLPEQIRLVKQYCELLGISCLEEKGVEADDVIASIT 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A +GF V I + DKDL+QLVS +++ KE++I V+ ++G+PPE++ AL Sbjct: 119 KKAVADGFEVCICTADKDLLQLVSSRVSVFNPWKEQEIQYNEVLSQFGVPPEQIADYLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ G G K A LL+E+ ++E ++ N R+ K ++ I + ET LS++ Sbjct: 179 VGDSSDNIPGVSGCGPKKAQALLKEFQSVEELVANTERLS-GKTKQMIEDQKETLLLSKR 237 Query: 246 LVMLRTDV--PITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN--IEP 301 L L D+ P+T L+ + +L +F F L+ T A +P Sbjct: 238 LATLHMDLAFPLTTEEFAFSLQAIDSAQLNTFYLQHGFKALVKHAETATSSIAVQTVTDP 297 Query: 302 VVLDINTTENKG 313 V L + KG Sbjct: 298 VTLKTVLEQLKG 309 >gi|289644114|ref|ZP_06476209.1| DNA polymerase I [Frankia symbiont of Datisca glomerata] gi|289506083|gb|EFD27087.1| DNA polymerase I [Frankia symbiont of Datisca glomerata] Length = 932 Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 175/513 (34%), Positives = 279/513 (54%), Gaps = 15/513 (2%) Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL--KS 523 H++K L L G S+ G D L +Y+ G+ + D+A + L Y R+++ S Sbjct: 427 HDVKGPILALAARGFSLAGVTSDTALAAYLALPGQRTFDLADLV---LRYLRRDLRPETS 483 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 + ID ++ + + L+L L L + ++ P++ V++ M Sbjct: 484 ETGQLTIDGSDEAAAAAADVVRARATLELADALDADLARRGATALLRDVELPLVTVLAGM 543 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E GI D D L + + + ++ G FNLSSPKQL ILF +L P Sbjct: 544 ERAGIAADTDHLLDLQKHYGAQVTEVAAQAQEIVGRPFNLSSPKQLQVILFDELGLPKTK 603 Query: 644 KTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 K KTG + T A L ++ D+P++ +L R +++++ T DSL I+ RVHT Sbjct: 604 KIKTG-YTTDADALAWLSTQADHPLLAVLLRHRDVARLR-TVVDSLIPMIDD-AGRVHTT 660 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761 ++ TGRL+S +PNLQNIP++T G++IRRAF+ + L++ADYSQIE+RI+AH+ Sbjct: 661 FNQMIAATGRLSSADPNLQNIPVRTAEGRQIRRAFVVGAGYESLLTADYSQIEMRIMAHL 720 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 + L F + D+H VAA+ FG+ +++V P++RR K +++ + YG+S F LA QL Sbjct: 721 SGDKGLIGAFASGEDLHTFVAAQAFGIPVDEVDPELRRRIKAMSYGLAYGLSAFGLAGQL 780 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I EA + ++ YF RF G+ +++ R +GY ETI GRR + ++ S + R Sbjct: 781 GIHPEEAREQMEAYFARFGGVRDFLRGVVERARADGYTETILGRRRYLPDLTSDNTQRRQ 840 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 + ER A+NAPIQGSAADI + AM+ V + L +H +++LLQ+HDELV E+ E Sbjct: 841 MAERMALNAPIQGSAADIIKIAMLGVDRKLREHGARSRLLLQVHDELVLEIAPGERADVE 900 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ M A + VPL+V++ W + Sbjct: 901 ALVRTEMGGAY----QMSVPLEVSVGSGRTWDD 929 Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/287 (31%), Positives = 140/287 (48%), Gaps = 10/287 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P+ + G P NA+ GF +ML +L++ R +H AV + Sbjct: 46 LLLLDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDERP----THVAVAW 101 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D P TFR+ Y +YKA R + P + Q+ L+ + +P + G+EADD+IAT Sbjct: 102 DLPTPTFRHTQYAEYKAGRAETPADFVGQVSLIHQVCDSLAVPGVTAAGYEADDVIATLA 161 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 G V +++ D+D +QLV + T + + V K+G+ P + Sbjct: 162 TQGAALGMQVLVVTGDRDALQLVDERVTVLMTRRGISDMTRFTPAEVEAKYGLTPTQYPD 221 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+P +PG+G KTA +Q++G+L ++ A + K A R Sbjct: 222 FAALRGDPSDNLPSVPGVGEKTATKWIQQFGSLAALVDRADEVGGKAGASLRAHLANVIR 281 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +R L L DVP+ + L L + + L+F L R+ Sbjct: 282 -NRSLTELARDVPLAVTPTDLQLRPWDREAVHQLFDTLQFRVLRERL 327 >gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4] gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4] Length = 914 Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 190/604 (31%), Positives = 314/604 (51%), Gaps = 37/604 (6%) Query: 377 IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTS 436 + W+ + G S + T + AIA++ D E +I + T Sbjct: 335 VADWLSLHASTGERSGVSVVGTRTPYGGDVTAIAVAAADG--------EGAYIATASATP 386 Query: 437 QDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYV 495 +D L + + K H K+ L G + G D L +Y+ Sbjct: 387 EDEKA-----------LGDWLADAEQPKALHEAKWAMHALRGRGWVLGGLTSDTALAAYL 435 Query: 496 LDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS-QVQEHAIE----NSNVIL 550 + G+ + ++ ++ L Y R+E+ + + D+ QV A E ++ +L Sbjct: 436 VRPGQRTFNLDDLS---LRYLRRELRVEETGQEQLSLLDDADQVDAEAAETEILSARAVL 492 Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610 L L +L + + ++ P+++V++ +E +GI +D L + + + + Sbjct: 493 DLAAALDTELDNIESTALLSEMELPLLEVLAVIEASGIAVDGTHLHDLQSRFAAEVSEAA 552 Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIK 669 E Y + G++ NL SPKQL +LF +L+ P KTKT + T A+ L+ + +P ++ Sbjct: 553 EAAYGVIGKQINLGSPKQLQVVLFDELEMPKTKKTKT-GYTTDAEALQNLFEKTSHPFLE 611 Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729 ++L R +++K T D L + + R+HT ++ TGRL+S EPNLQNIP++TD Sbjct: 612 HLLAHRDATRLKVT-VDGLLKTVAE-DGRIHTTFNQTVAATGRLSSTEPNLQNIPVRTDA 669 Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 G++IR F+ L++ADYSQIE+RI+AH++ L + F D+H V A FGV Sbjct: 670 GRQIRDGFVVGEGYDSLLTADYSQIEMRIMAHVSGDAGLIEAFNTGEDLHSFVGARAFGV 729 Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848 IE+V+P++RR K +++ + YG+S F LA QL+I EA ++ YF RF G+ +Y+ + Sbjct: 730 PIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKISTEEAKSQMEAYFARFGGVRDYLHE 789 Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908 R++GY T++GRR + ++ S R + ERAA+NAPIQG+AADI + AMI+V Sbjct: 790 VVEQARKDGYTSTLYGRRRYLPDLTSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQ 849 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 +SL + L ++MLLQ+HDELV EV + E Q++ M A I L VPL V++ Sbjct: 850 RSLREAGLKSRMLLQVHDELVLEVVDSEREQVEQLVRDKMSSA----IELSVPLDVSVGT 905 Query: 969 SNNW 972 +W Sbjct: 906 GRSW 909 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 116/337 (34%), Positives = 178/337 (52%), Gaps = 37/337 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P + K H G NA+ GF +ML LL++ + +H A F Sbjct: 27 LMLLDGHSLAFRAFYALPAENFKTHSGQVTNAVYGFTSMLINLLRDEQP----THVAAAF 82 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E +P+YKANR K P+ Q+ + + A GIP + +GFEADDIIAT T Sbjct: 83 DVSRQTFRAEKFPEYKANRSKAPDEFKGQVEITKDVLGALGIPVMAEEGFEADDIIATLT 142 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 AE G+ V +++ D+D +QLV+ T LY K+ D+ V +K+G+ P + Sbjct: 143 TQAEALGYRVLVVTGDRDSLQLVTDGVTVLYP--KKGVSDLTRFTPAAVEEKYGLTPAQY 200 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEY 236 AL GD DN+PGIPG+G KTA ++EYG+L ++ N +++ K REN+ Sbjct: 201 PDFAALRGDPSDNLPGIPGVGEKTATKWIKEYGDLVGLVDNVDKVRGKVGDALRENL--- 257 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT----- 291 L+R+L + DVP+ + L+L + ++ + LEF L +R+ T Sbjct: 258 -PNVLLNRELTEMVRDVPLPYTPDQLMLAQWDREKIHALFDDLEFKVLRDRLFATLAPVE 316 Query: 292 ------YDCDAANIEP------VVLDINTTENKGIAI 316 ++ + +EP + L +T E G+++ Sbjct: 317 AEAEEGFEVRGSALEPGAVADWLSLHASTGERSGVSV 353 >gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN] Length = 870 Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 195/535 (36%), Positives = 298/535 (55%), Gaps = 24/535 (4%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 +IL LK FF E G+N+K D L GI +R D+ L ++ + G + Sbjct: 351 KILPILKDFFLREDLTFYGYNLKRDCHALLNAGIVIREISYDLALAEHLTNGGGKISFQS 410 Query: 507 SIAQKWLSYTRKEILKSRKS-SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK- 564 + + T K + +PI ++ + Q +++ E L +L + I+E+ Sbjct: 411 LLVNHGFTETAHRFAKEWGNLGLPIGRLPE-QPEQYFGE-----LVAYLPIIKDAILEEI 464 Query: 565 ----LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 L H+ ++ P+ V+ ME G+ +D + L + A L L E IYDLSG Sbjct: 465 NRKNLNHILSDIEMPLEKVLVSMERAGVPLDVEELAILEALFETELAVLTEEIYDLSGRP 524 Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 FN+ SPKQL DIL+ +L K K+ T A+ LE + ++PII+ +L +R + K+ Sbjct: 525 FNIKSPKQLSDILYNELGLRPIDKAKS----TRAEVLEALRS-EHPIIEKLLAFRTIEKL 579 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-IS 739 STY +LP ++ TQR+H + T+TGRLA +PNLQNIPI+++ G +R+AF +S Sbjct: 580 LSTYVKALPKQVDSHTQRIHPSFDQTGTVTGRLACRDPNLQNIPIRSERGILLRKAFRLS 639 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 +SADYSQIELR LAH+++ L FE+ DIH A+++F V +E+VS + R Sbjct: 640 EKNSYFLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRM 699 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AKT+NF I+YG F LA L+I EA + I+ YF R+P I ++E+T ++ V Sbjct: 700 QAKTVNFGIVYGQQAFGLAKVLKISVGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRV 759 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 T+ GR D N S R + R A+N IQGSAA++ + AM+ + ++++ ++ ++ Sbjct: 760 TTMLGRERIIDSWNEFPGS-RAASGRFAVNTRIQGSAAELIKLAMLDISQAIKQQQMKSR 818 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 MLLQIHDEL+FEVPEEEI +++ ME A + L VP+ VNI + NW E Sbjct: 819 MLLQIHDELLFEVPEEEIEEMQRLVREKMESA----MTLSVPIAVNILIGKNWAE 869 Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 97/258 (37%), Positives = 152/258 (58%), Gaps = 8/258 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LF++D S FI+RA++A P + + H G A+ GF L KL++ E + S +FD Sbjct: 4 LFVLDASGFIFRAYFALPEM-KNHQGQATQAVFGFIRSLNKLIKEFSPEYMIS----VFD 58 Query: 67 YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P R IY DYK+NR K E + PQ+ LV+ G+ +E + EADD+IA+ Sbjct: 59 GPNNKQSRQAIYADYKSNRQKKFEDIPPQIALVKEYCSLIGLAYLEKESVEADDVIASIA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184 A +E + V + + DKDL+QLV+ ++ ++ + I VI+++GIPP + A Sbjct: 119 KKAREENYKVYVCTADKDLLQLVNDHVVAWNPWADQGVVGISEVIERYGIPPGNIPDYLA 178 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS DNIPG+PG G K AA LL+++G++E +L N +K + + E ET +LS+ Sbjct: 179 LVGDSSDNIPGVPGCGPKKAAALLKQFGSVEGLLENLDAVKGLSQT-MLSERQETLKLSK 237 Query: 245 KLVMLRTDVPITIPLEHL 262 +L +L +++PI +P+E L Sbjct: 238 RLALLDSNIPIPVPIESL 255 >gi|219557549|ref|ZP_03536625.1| DNA polymerase I [Mycobacterium tuberculosis T17] gi|260200690|ref|ZP_05768181.1| DNA polymerase I [Mycobacterium tuberculosis T46] gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46] gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17] gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46] gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17] Length = 904 Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 168/497 (33%), Positives = 285/497 (57%), Gaps = 11/497 (2%) Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQ 537 G ++ G D L +Y++ G+ S + ++ ++L R E + ++ S+ D +D++ Sbjct: 410 GWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAE 469 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 + I + ++ L L +L + ++ P+ V+++ME GI +D +L + Sbjct: 470 TIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTE 529 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 + ++ + + Y + G++ NL SPKQL +LF +L P +TKTG + T A L Sbjct: 530 LQSQFGDQIRDAADAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADAL 588 Query: 658 EQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + + + +P ++++L R ++++K T D L + R+HT ++ TGRL+S Sbjct: 589 QSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAA-DGRIHTTFNQTIAATGRLSST 646 Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 EPNLQNIPI+TD ++IR AF+ +L++ADYSQIE+RI+AH++ L + F Sbjct: 647 EPNLQNIPIRTDASRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGE 706 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+H VA+ FGV I++V+ ++RR K +++ + YG+S + L+ QL+I EA + + Y Sbjct: 707 DLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAY 766 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F RF G+ +Y+ R++GY T+ GRR + E++S +R ERAA+NAPIQGS Sbjct: 767 FARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGS 826 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AMI V K+L + +LA++MLLQ+HDEL+FE+ E ++ M A Sbjct: 827 AADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAY--- 883 Query: 956 INLRVPLKVNIKVSNNW 972 L VPL+V++ +W Sbjct: 884 -PLDVPLEVSVGYGRSW 899 Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 113/302 (37%), Positives = 160/302 (52%), Gaps = 13/302 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG+S +RAFYA P + K GL NA+ GF ML LL ++ +H A F Sbjct: 17 LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAF 72 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR + YP+YKANR P+ Q+ + + A GI + GFEADD+IAT Sbjct: 73 DVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLA 132 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EG+ V +++ D+D +QLVS T LY V E + E V++K+G+ P + Sbjct: 133 TQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPD 192 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + EYG+L +++ N ++ K A R Sbjct: 193 FAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVR 252 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 +R+L L DVP+ + L L+ + + LEF L +R+ +D AA P Sbjct: 253 -NRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRL---FDTLAAAGGP 308 Query: 302 VV 303 V Sbjct: 309 EV 310 >gi|124516396|gb|EAY57904.1| DNA polymerase I [Leptospirillum rubarum] Length = 872 Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 165/426 (38%), Positives = 252/426 (59%), Gaps = 14/426 (3%) Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 NV+ +LW + E LL + + ++ P+ ++ QME+ GI+ID+ L+ I Sbjct: 455 NVLSKLW----EDAVKEGLLELVQSIEIPLGRILYQMEVLGIRIDRQALESARESIEALA 510 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666 LEE IY L+G +F + SPKQ+G+IL+ KL P+ K KTG + T + L ++ G +P Sbjct: 511 RELEEEIYRLAGSRFTILSPKQVGEILYGKLGLPTARKGKTG-YSTDEETLTGLS-GLHP 568 Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 + + IL +RQ+ K+ STY D + ++ + R+H ++ T TGRL+S PNLQNIP++ Sbjct: 569 LPEKILAYRQMKKLLSTYVDPISRGVDAQG-RLHGQFNQTVTATGRLSSSNPNLQNIPMR 627 Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 + G++IR+ FI+ + L+SADYSQIELR+LAH ++ L VFE + DIH A +F Sbjct: 628 SPAGREIRKCFIAGENRVLLSADYSQIELRLLAHFSEDPELMAVFERNEDIHARTARLLF 687 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 G + V+P+ RR AKTINF I+YG+S F L+ L + EA +I RYF FP + Sbjct: 688 G---DPVTPETRRKAKTINFGILYGMSAFSLSLDLGVEPPEAQAFIDRYFGAFPKVGPLF 744 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 + ++ G V TI GR+ E+++P R ER A+N +QGSAAD+ +++M+ Sbjct: 745 DSILEEAKKTGEVRTILGRKRRIPELSAPDRRSREYGERMAVNTVLQGSAADLIKKSMVD 804 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 + +D +L+Q+HDEL+FEV E+ + AS I ME A + L+VPL V + Sbjct: 805 FGQVRKDRPEVGDLLVQVHDELLFEVREDNLEDASGTIRSLMEGA----LRLKVPLIVQV 860 Query: 967 KVSNNW 972 NW Sbjct: 861 GHGKNW 866 Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 162/294 (55%), Gaps = 13/294 (4%) Query: 7 LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG +I+RA+++ ++R GLP +AI F NML +L KE S AV+F Sbjct: 26 LVLMDGFGYIFRAYHSRVTFVTRA--GLPTDAITVFGNMLLSVL----KELSPSAMAVVF 79 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 + R+EI P+ KANRP+ P L Q+P + + G+P + G+EADD IA Sbjct: 80 ESRTGNVRSEILPEIKANRPEPPSDFLQQIPYIERLIRGIGVPLLSTDGYEADDTIAALA 139 Query: 126 ------YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 + V ++S+DKDL+ LVS +YD + ++ + V +KWG+ P ++ Sbjct: 140 LKWLNHHDRTNVPCHVVVLSSDKDLLTLVSERVWVYDPMTKKVLGPSDVREKWGVEPWQI 199 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L ALTGD+ DNIPG+PGIG KTAA LL G ++ + + + ++ R + E+ E Sbjct: 200 PDLLALTGDTADNIPGVPGIGQKTAAKLLGNQGTIDTLYEDLDNVVPERIRALLREHRER 259 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 ++K+ +L +D+ +++ E L L + L S L+ LE L++RV T + Sbjct: 260 VFRNKKVTVLHSDLALSLEPESLSLSPPDMDSLKSLLQELEAPGLLSRVHRTLE 313 >gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805] gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805] Length = 988 Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 185/519 (35%), Positives = 288/519 (55%), Gaps = 46/519 (8%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTR----------KEILKSRKSSIPIDKISDSQ 537 D +L Y+ D+ + H + +A++ T K+ S + +PID Q Sbjct: 482 DTLLADYLRDAA-AKHSLDVMAERDYGITPTVFSDLVGKPKDGKASCFAEVPID-----Q 535 Query: 538 VQEHAIENSNVILQLWLLLRPKLIV--EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + + ++ +L L LR +L ++L ++ +R++ P+ V++ ME TGI+ID L Sbjct: 536 AALYCAMDVHLTRKLALDLREQLQTSGQQLTNLLDRVELPLEPVLALMEATGIRIDLTYL 595 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTT 653 +S E+ + L LE N +G FNL+SPKQLG++LF L +TKTG + T Sbjct: 596 DTLSKEMGETLTRLEANAKQAAGVDFNLASPKQLGELLFETLGLDRKKSRRTKTG-YSTD 654 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 A L+++ D+P++ +LE R LSK+KSTY D+LP + T RVHT ++ A T TGRL Sbjct: 655 ATVLDKL-ADDHPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFNQAVTATGRL 713 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S PNLQNIPI+T+ ++IR+AF+ L+SADYSQIELRIL H++ L Q + + Sbjct: 714 SSSNPNLQNIPIRTEYSRRIRKAFLPQEHWTLLSADYSQIELRILTHLSGEEVLQQAYRD 773 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 D+H + A + + ++++ RR KTINF +IYG+ R A + + ++EA +++ Sbjct: 774 GDDVHALTARLLL--DKDEITADERRLGKTINFGVIYGMGAQRFARETGVSQAEAKEFLS 831 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR--IHYD-------------EIN---SP 875 +Y R+P + ++E + GYVETI GRR H+D EI+ + Sbjct: 832 KYRERYPKVFAFLELQERLALSRGYVETILGRRRPFHFDRNGLGRLLGKDPFEIDLDVAR 891 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + + RAA NAPIQGS+ADI + AMI + +L+ L ++LLQ+HDELV EV Sbjct: 892 RGGMEAQQLRAAANAPIQGSSADIIKLAMIQLQAALQQQSLPARLLLQVHDELVLEVEPS 951 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++V +ME A + L VPL +NW E Sbjct: 952 ALEDVKALVVSTMETA----VELSVPLVAETGSGSNWME 986 Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 94/276 (34%), Positives = 133/276 (48%), Gaps = 32/276 (11%) Query: 7 LFLVDGSSFIYRAFYA-----TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 L LVDG S +R+FYA L+ K DG P + GF L + + E +A Sbjct: 10 LLLVDGHSLAFRSFYAFSKGGEGGLATK-DGRPTSVTYGFLKALLDNSKGLKPEGVA--- 65 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLP-LVRLATQAFGIPAIEIQGFEADDI 120 + FD TFR++ +YKA+R PE+ L L + + +P G+EADD+ Sbjct: 66 -IAFDTAEPTFRHQADANYKAHRDVAPEVFFQDLDQLQTILRERLKLPLCLAPGYEADDV 124 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPT---TCLY-------DTVKEEKIDIEHVIK 170 + T A G+ V I+S D+DL QLV LY + ID V+ Sbjct: 125 LGTLANRAATSGWRVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKSSGPTLIDEAGVVA 184 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL----------IN 220 K G+ P+K+V L+ALTGDS DNIPG+ G+G KTA LL+E +L+ + Sbjct: 185 KLGVMPDKVVDLKALTGDSSDNIPGVKGVGPKTAINLLKENNDLDGVYRVLEEVEAEGPK 244 Query: 221 ASRIKQKKRRENILEY-AETARLSRKLVMLRTDVPI 255 ASR K + L + A LSR L + D+P+ Sbjct: 245 ASRGAVKGALKGKLGADRDKAYLSRHLAEILVDIPL 280 >gi|255994188|ref|ZP_05427323.1| DNA polymerase I [Eubacterium saphenum ATCC 49989] gi|255993856|gb|EEU03945.1| DNA polymerase I [Eubacterium saphenum ATCC 49989] Length = 918 Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/423 (37%), Positives = 249/423 (58%), Gaps = 7/423 (1%) Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608 I +++ L+ ++ + L V+ ++ P+++V++ ME TG+ +D + LK AE+S Sbjct: 499 IFKVYDKLKSQIEEDDLQKVFYEIEMPLVEVIASMENTGVWLDTEFLKTYEAELSNIEAE 558 Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668 L + IY+L+G +FN++SPKQLG++LF KL KTK G + T A+ L+++ +PII Sbjct: 559 LLDKIYELAGFEFNVNSPKQLGEVLFEKLNLEPKVKTKRG-YSTNAEVLQKLR-KTHPII 616 Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728 ILE+R++SK+ STY + F + ++ TGR+A + P LQ IP+KTD Sbjct: 617 DLILEFRKVSKLNSTYVRGFMGFKGTDGKVRPEFLQIGAS-TGRMACINPALQTIPVKTD 675 Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 +G++IR+AF + + +SADYSQIELRIL H++ L F++ DIH VA + G Sbjct: 676 MGKRIRKAFKAGKDRVFVSADYSQIELRILGHVSCDEGLINAFKSGEDIHEAVAVNVLGA 735 Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848 VS +R AK INF +IYG+S F L+ +L I R +A YI YF + ++EY+E Sbjct: 736 QKGAVSKAVRSKAKAINFGVIYGMSDFGLSNELEISRKDAKKYIDEYFAKHRAVYEYMEA 795 Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908 K+ +Q G V T GR EIN+ +RN+ ER A+N+PIQG ADI + AM +V+ Sbjct: 796 QKSIAKQTGAVRTETGRIRKIPEINAQNIMVRNLGERLAMNSPIQGMGADIMKLAMNNVY 855 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 ++++ L K++LQIHDELV + + +++ ME A NL+ L N + Sbjct: 856 RAIQKQGLDAKIVLQIHDELVIDASVSDGEKVKKLLKDEMEAAY----NLKTGLIANPQS 911 Query: 969 SNN 971 N Sbjct: 912 GEN 914 Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 105/336 (31%), Positives = 171/336 (50%), Gaps = 24/336 (7%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++DG+S +RA+YA + DG+ NAI GF +ML+K + + + IA V FD Sbjct: 8 IIDGNSLFFRAYYAIKA-NMSADGMATNAIYGFLSMLYKSINDFSPDYIA----VAFDLG 62 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFR+E + DYKANR K + LL Q+P+++ A I ++ + FE DDII ++ Sbjct: 63 GKTFRHEKFDDYKANRRKTDDELLMQIPVIKEILAAMNIKILQKKAFEGDDIIGSFARFV 122 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-EKIDIEHVIK---KWGIPPEKMVCLQA 184 E + V IIS DKD+ QL+S T + T + IDI + K ++ P+ + +A Sbjct: 123 ESDDVEVIIISGDKDMFQLISDNTKIAYTKRGISNIDIYDIQKFEDEYNFAPKHFIDYKA 182 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET-ARLS 243 + GDS DN G+ GIG K A L+ +Y +ENI N I K + LE ++ A + Sbjct: 183 IMGDSSDNYKGVKGIGDKGARNLVTKYQTIENIYQNIDEISGKTKLA--LENSKMQAFMG 240 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 ++L + ++ + + L+ + L D + L S K + + ++ T + N Sbjct: 241 KELATIIVNLDLGLTLDDVKLVDPDFDTLASIYKNYKLNTFLKKLETNGCVNGTN----- 295 Query: 304 LDINTTENKGIAIETEIDRD-----TTIKTSQFSSL 334 D T E KG+ + ++ RD T+K + + L Sbjct: 296 -DDETDELKGM-LSIDVSRDVGSLEATLKKADVADL 329 >gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100] gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100] Length = 879 Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 183/515 (35%), Positives = 300/515 (58%), Gaps = 27/515 (5%) Query: 465 IGHNIKYD-KLVLHRYGI-SMRGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR---K 518 IGHN+KYD +++ + + + + + D M+++++ + S R + D+ +A++ Y + Sbjct: 381 IGHNLKYDFEIIKNNFNLLPPKNYADTMILAWLKEPSLRVNMDV--LAKRIFDYETLHFE 438 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 +++K +S +D + ++A E++ + L+ +L L + LL + ++ + I Sbjct: 439 DLVKKGESFAGVDV---EKACKYAAEDAYITLRFYLYFLKNL-EKSLLELAQKSEFEFIK 494 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 V+ ME GI++D L+ + ++++ L E IYDL+GEKFN++SPKQ+GDILF KLK Sbjct: 495 VLIMMENNGIKLDIQKLESLMQNFNQDIKILSEKIYDLAGEKFNINSPKQVGDILFEKLK 554 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK-RTQ 697 PSG K+KTG + T + L + ++ IIK IL +R+L+K+ TY + L K Sbjct: 555 LPSGKKSKTG-YSTDEKVLNNL-IDEHLIIKEILAYRELAKLVGTYCEPLLKLAKKDENS 612 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 R+++ + T TGRL+S +PNLQNIP + + F++ IS DYSQIELR+ Sbjct: 613 RIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKTCFVAKEGFSFISLDYSQIELRM 672 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 LAH ++ L + F N DIH A IFG + + R AK+INF +IYG+ L Sbjct: 673 LAHFSEDEKLLEAFSNDEDIHAKTAIMIFG----ESNYHTRSIAKSINFGLIYGMGYKTL 728 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 + L+I A +YI++YF F I Y EK KN +QNG+++T+ GR+ ++D N+ Sbjct: 729 SQNLKIEAKLAKEYIEKYFKNFTSIKTYFEKVKNEAKQNGFIKTLLGRKRYFDFENAKPM 788 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 I + ER +IN+ +QGSAADI + AMI + K L+++K +++LQIHDEL+FEV +E Sbjct: 789 QIA-MYERESINSTLQGSAADIIKLAMIKIAKDLDENK---RLILQIHDELIFEVKDEFC 844 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ ME + L+V LK + ++ NW Sbjct: 845 DEFAKNASDIMENI----VKLKVKLKTSSSIAKNW 875 Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 93/292 (31%), Positives = 151/292 (51%), Gaps = 17/292 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R FYA L + G P N I+GF N ++ L + E + D Sbjct: 4 LTIIDTFGFFFRLFYALKGL-KNSKGEPSNMISGFANFIYSL----KNEHPSDMIIFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EI P+YK NR P LL Q+P+ + G + +G+EADDIIA+ Sbjct: 59 SKGKTFRSEIDPNYKINRTPPPPDLLAQIPICIQMIEKMGFSSFSCEGYEADDIIASLVK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 E + + II+ DKDL QL+ +Y + + + ++K+G+ P ++ AL Sbjct: 119 ECENKDIFIRIITQDKDLYQLIKDDKVSIYSPISKNDYNEAGCLEKYGVKPSQIRDFLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ GIG K A LL E+ ++E I N + ++ ++ R +LE E A LS+K Sbjct: 179 CGDSSDNIPGVKGIGAKGAKNLLDEFESIEGIYENLTLVRNERSRNLLLEGKENAFLSKK 238 Query: 246 LVMLRTDVPITIPLEHLILEDCNGP------RLISFLKALEFTKLINRVATT 291 L L ++ + ++++L +C P +++ L+ E L+ ++ T Sbjct: 239 LASLYENLDV----KNMLL-NCEYPKDEPLLKIMDVLEHYELNALLKKLRTN 285 >gi|291007053|ref|ZP_06565026.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] Length = 894 Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 179/544 (32%), Positives = 295/544 (54%), Gaps = 33/544 (6%) Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS 502 TLT + L + + F K H++K + G + G D L +Y++ G+ S Sbjct: 364 TLTDDDERALSAWLADPAFPKAAHDVKGPLHAVRDRGWKLAGLSSDTALAAYLVRPGQRS 423 Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 D+ + ++L R+ + + + + D + + S L+R + + Sbjct: 424 FDLPDLVVRYLQ--RELRAEQGEDDGQLSLLEDEEQTKAGAAASE-------LVRARAVA 474 Query: 563 E---KLLHVYERLDKP---------MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610 E L R+D ++ V+S++E GI +D D L + A + + Sbjct: 475 ELADTLDDELARIDSTRLLTELELPLLQVLSELEAAGIAVDADQLAGLGAHFAARVKQAA 534 Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIK 669 ++ Y + G++ NL SPKQL +LF +L P +TKTG + T A+ L+ + ++P ++ Sbjct: 535 QDAYGVIGKEINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDAEALQSLYEKTEHPFLQ 593 Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729 ++LE R +++K+T D L I R+HT + TGRL+S EPNLQNIPI+T+ Sbjct: 594 HMLEHRDATRLKTT-VDGLVKSIAD-DGRIHTTLNQTIAATGRLSSTEPNLQNIPIRTEE 651 Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 G++IR F+ +L++ADYSQIE+RI+AH++ L + F D+H VA+ FGV Sbjct: 652 GRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAFGV 711 Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848 I++V ++RR K +++ + YG+S F LA QLRI +A + ++ YF RF + +Y+ Sbjct: 712 PIDEVDHELRRRVKAMSYGLAYGLSAFGLAQQLRISTEDAREQMEAYFARFGSVRDYLRD 771 Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908 + R++GY TI GRR + ++NS R++ ER A+NAPIQGSAADI + AM+ VH Sbjct: 772 VVDQARKDGYTSTILGRRRYLPDLNSDNRQRRDMAERMALNAPIQGSAADIIKVAMLDVH 831 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 ++L L ++MLLQ+HDEL+ EV + E +++ M A L VPL+V++ V Sbjct: 832 EAL--RPLRSRMLLQVHDELIIEVADGEREEVERLVRERMGAA----YALDVPLEVSVGV 885 Query: 969 SNNW 972 +W Sbjct: 886 GGSW 889 Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 105/306 (34%), Positives = 157/306 (51%), Gaps = 16/306 (5%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 ++ L L+DG S YRAFYA P + + G NA+ GF +ML LL++ + +H Sbjct: 4 EDRRLLLIDGHSMAYRAFYALPKENFQTGTGQHTNAVYGFTSMLINLLRDEQP----THL 59 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 AV FD TFR+E + DYKA R P+ Q+ L++ A +P + + +EADD+I Sbjct: 60 AVAFDVSRKTFRSETFADYKATRGTTPDEFKGQVSLIQDVLAALCVPTLSKEHYEADDVI 119 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDT--VKE-EKIDIEHVIKKWGIPPE 177 AT T A EGF V+I + D+D +QLV+ T LY T V E + + V K+G+ PE Sbjct: 120 ATLTTQATGEGFKVSICTGDRDALQLVTDAVTVLYPTKGVSELTRFTPQAVSDKYGLSPE 179 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENIL 234 + AL GD DN+P IPG+G KT +Q++G+L ++ +K K R N+ Sbjct: 180 QYPDFAALRGDPSDNLPKIPGVGEKTVTKWIQQFGSLAGLVDRVDEVKGKAGDALRANL- 238 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 L+R+L L DVP+ + L + + + LEF L R+ +T Sbjct: 239 ---SAVLLNRQLTELVKDVPLELAPADLAVRQWDRDAVHRLFDDLEFRVLRERLFSTLSA 295 Query: 295 DAANIE 300 +E Sbjct: 296 AEPEVE 301 >gi|134101936|ref|YP_001107597.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] gi|133914559|emb|CAM04672.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] Length = 895 Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 179/544 (32%), Positives = 295/544 (54%), Gaps = 33/544 (6%) Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSS 502 TLT + L + + F K H++K + G + G D L +Y++ G+ S Sbjct: 365 TLTDDDERALSAWLADPAFPKAAHDVKGPLHAVRDRGWKLAGLSSDTALAAYLVRPGQRS 424 Query: 503 HDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 D+ + ++L R+ + + + + D + + S L+R + + Sbjct: 425 FDLPDLVVRYLQ--RELRAEQGEDDGQLSLLEDEEQTKAGAAASE-------LVRARAVA 475 Query: 563 E---KLLHVYERLDKP---------MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610 E L R+D ++ V+S++E GI +D D L + A + + Sbjct: 476 ELADTLDDELARIDSTRLLTELELPLLQVLSELEAAGIAVDADQLAGLGAHFAARVKQAA 535 Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIK 669 ++ Y + G++ NL SPKQL +LF +L P +TKTG + T A+ L+ + ++P ++ Sbjct: 536 QDAYGVIGKEINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDAEALQSLYEKTEHPFLQ 594 Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729 ++LE R +++K+T D L I R+HT + TGRL+S EPNLQNIPI+T+ Sbjct: 595 HMLEHRDATRLKTT-VDGLVKSIAD-DGRIHTTLNQTIAATGRLSSTEPNLQNIPIRTEE 652 Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 G++IR F+ +L++ADYSQIE+RI+AH++ L + F D+H VA+ FGV Sbjct: 653 GRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAFGV 712 Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848 I++V ++RR K +++ + YG+S F LA QLRI +A + ++ YF RF + +Y+ Sbjct: 713 PIDEVDHELRRRVKAMSYGLAYGLSAFGLAQQLRISTEDAREQMEAYFARFGSVRDYLRD 772 Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908 + R++GY TI GRR + ++NS R++ ER A+NAPIQGSAADI + AM+ VH Sbjct: 773 VVDQARKDGYTSTILGRRRYLPDLNSDNRQRRDMAERMALNAPIQGSAADIIKVAMLDVH 832 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 ++L L ++MLLQ+HDEL+ EV + E +++ M A L VPL+V++ V Sbjct: 833 EAL--RPLRSRMLLQVHDELIIEVADGEREEVERLVRERMGAA----YALDVPLEVSVGV 886 Query: 969 SNNW 972 +W Sbjct: 887 GGSW 890 Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 105/306 (34%), Positives = 157/306 (51%), Gaps = 16/306 (5%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 ++ L L+DG S YRAFYA P + + G NA+ GF +ML LL++ + +H Sbjct: 5 EDRRLLLIDGHSMAYRAFYALPKENFQTGTGQHTNAVYGFTSMLINLLRDEQP----THL 60 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 AV FD TFR+E + DYKA R P+ Q+ L++ A +P + + +EADD+I Sbjct: 61 AVAFDVSRKTFRSETFADYKATRGTTPDEFKGQVSLIQDVLAALCVPTLSKEHYEADDVI 120 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDT--VKE-EKIDIEHVIKKWGIPPE 177 AT T A EGF V+I + D+D +QLV+ T LY T V E + + V K+G+ PE Sbjct: 121 ATLTTQATGEGFKVSICTGDRDALQLVTDAVTVLYPTKGVSELTRFTPQAVSDKYGLSPE 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENIL 234 + AL GD DN+P IPG+G KT +Q++G+L ++ +K K R N+ Sbjct: 181 QYPDFAALRGDPSDNLPKIPGVGEKTVTKWIQQFGSLAGLVDRVDEVKGKAGDALRANL- 239 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 L+R+L L DVP+ + L + + + LEF L R+ +T Sbjct: 240 ---SAVLLNRQLTELVKDVPLELAPADLAVRQWDRDAVHRLFDDLEFRVLRERLFSTLSA 296 Query: 295 DAANIE 300 +E Sbjct: 297 AEPEVE 302 >gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum Nigg] gi|270285571|ref|ZP_06194965.1| DNA polymerase I [Chlamydia muridarum Nigg] gi|270289582|ref|ZP_06195884.1| DNA polymerase I [Chlamydia muridarum Weiss] gi|301336968|ref|ZP_07225170.1| DNA polymerase I [Chlamydia muridarum MopnTet14] gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum Nigg] Length = 866 Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 186/563 (33%), Positives = 303/563 (53%), Gaps = 42/563 (7%) Query: 431 LSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 L +H S G EI ++ LK FF + G+ K D L +GI + Sbjct: 326 LRLHGVALSGGDEVFYIEISGDQEIALLKAFFADATTKFFGYRTKRDNHALKNHGIDVHV 385 Query: 486 FEDIMLMSYVLDSG----------RSSH--DIASIAQKWLSYTRKEILKSRKSSIPIDKI 533 D++L ++++ G S H + A A++W + SS+P+ + Sbjct: 386 TADLVLAQHLVNGGAKISFQTLLVESGHIQEAAFFAKEWGA-----------SSLPVQNL 434 Query: 534 SDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD 593 + Q I S + + L KL + L +++ +++P+ +++ ME G+ +D + Sbjct: 435 PQNPAQYFGIFVSR-LPSIKNYLFEKLEEKGLKSIFKNVEQPLEEILFAMECAGMPLDSE 493 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L + ++SK L + + IYDL+G +FN+ SPKQL D+L+ +L K K+ T Sbjct: 494 GLLVLDRDLSKELETYTQEIYDLAGCEFNIKSPKQLSDVLYHRLGIKPVDKAKS----TK 549 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 A+ LE + G + II IL +R K+ STY +LP I+ T RVH ++ T+TGRL Sbjct: 550 AEVLEALE-GSHEIISKILAFRATEKMLSTYVRALPRQIDLGTHRVHPTFNQVGTVTGRL 608 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 + +PNLQNIP++ + G+ +R AF + ++ADYSQ+ELR LAH+++ L + F+ Sbjct: 609 SCQDPNLQNIPVRYERGKSLREAFRFTKENDYFLAADYSQVELRFLAHLSQDETLKRAFD 668 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH A+++F V +++V+ + R AK +NF + YG + L+ L+I +EA I Sbjct: 669 SGEDIHTFTASQVFNVPLDQVTERQRYQAKAVNFGLAYGQQAYGLSKNLKISVNEAQGLI 728 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR-RIHYDEINSPKSSIRNINERAAINAP 891 YF R+P E+I T + V T+ GR RI D +SP + R + R A+N Sbjct: 729 DAYFARYPQASEFITHTIEQASKEQKVTTMLGRERILSDWESSPGA--RAASGRLAVNTR 786 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGSAA++ + AM+++ + L L +++LLQIHDEL+FEVP+EE+ ++ ME A Sbjct: 787 IQGSAAELIKLAMLNISRELVSRGLKSRLLLQIHDELLFEVPKEELEEMKVLVQEKMESA 846 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 ++L VPL VN+ + NW E Sbjct: 847 ----MSLSVPLVVNVLIGKNWAE 865 Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/257 (37%), Positives = 150/257 (58%), Gaps = 7/257 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LF++D S FI+RA++A P + R +G A+ GF L KL+ + E + +FD Sbjct: 4 LFILDASGFIFRAYFALPEM-RGPNGGSTQAVFGFIRSLDKLVNDLSPE----YMVAVFD 58 Query: 67 YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P R E+Y DYK+NR + E L Q+ LV+ + GIP +E +G EADD+IA+ Sbjct: 59 GPNNKQSRQELYADYKSNRDRKFEDLPEQIALVKQYCELIGIPCLEKEGVEADDVIASVA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A EGF V I + DKDL+QLV+ +++ KE++I V+ ++G+ P+++ AL Sbjct: 119 KKAVAEGFEVCICTADKDLLQLVNSQVSVFNPWKEQEIKYNEVLLQFGVAPDQIADYLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ G G K A L+E+ ++E+++ N R+ K ++ I E ET LS++ Sbjct: 179 VGDSSDNIPGVVGCGPKKAQAFLKEFQSVEDLVANTQRLS-SKNKQMIEEQIETLLLSKR 237 Query: 246 LVMLRTDVPITIPLEHL 262 L L TD+ I + E + Sbjct: 238 LATLHTDLMIPLKTEEM 254 >gi|295102397|emb|CBK99942.1| DNA polymerase I [Faecalibacterium prausnitzii L2-6] Length = 861 Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 160/408 (39%), Positives = 244/408 (59%), Gaps = 9/408 (2%) Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLSSP 626 +Y ++ P+ V++ M GI +D++ +++ ++ L + I+ +G FN +SP Sbjct: 460 LYNDIEFPLAQVLADMTRIGILVDKEGIEKFGVKMRSELEDVLTRIHMETGSASFNPNSP 519 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG++LF + P G KT+ G W T A+ LE + D P++++IL++R K+ STY + Sbjct: 520 KQLGEMLFDTMGLPHGKKTQRG-WSTDAETLEALR--DYPLVEDILQYRAYQKLNSTYVE 576 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 L I + R+HT ++ TGRL+S PNLQNIPI+T+LG ++R F++ P L+ Sbjct: 577 GLLKVIAE-DGRIHTRFNQTEARTGRLSSDNPNLQNIPIRTELGSQLRAYFVARPGCVLV 635 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 ADYSQIELRILAH+ + Q F DIHR AA+I+G+ +E+V+P++R AK INF Sbjct: 636 DADYSQIELRILAHVTGDEHMQQAFLTGEDIHRSTAAKIYGLPLEQVTPRLRSSAKAINF 695 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YG + L+ + + EA ++K Y FP + Y++KT + R GYV T+FGRR Sbjct: 696 GIMYGKGAYSLSKDIGVSVKEADAFLKNYLATFPKVSGYMDKTISDARSCGYVSTLFGRR 755 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 E+ S +IR ER A N PIQG+AAD+ + AM+ V + L D K+ ++++L +HD Sbjct: 756 RSLPELASNNHNIRASGERMARNTPIQGTAADVIKLAMVRVWRRLRDEKMESRLILTVHD 815 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EL+ E PE E A+ I+ ME C +N VPL + NW E Sbjct: 816 ELIVEAPEAEAAKAAAILQEEME-GC---VNYAVPLSTEVHQGKNWLE 859 Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 161/304 (52%), Gaps = 15/304 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DG+S RAFY LL+ K DG NAI GF N+L LL KES AV FD Sbjct: 3 LLVIDGNSIANRAFYGIKLLTTK-DGRYTNAIFGFLNILLSLL----KESEPDEVAVAFD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR+++Y YKA R K+P+ L QLP++R G + +G+EADDI+ T Sbjct: 58 LKAPTFRHKMYDGYKATRHKMPDELAAQLPVIRQLLALLGYREVTAEGWEADDILGTLAA 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV------KEEKIDIEHVIKKWGIPPEKMV 180 + + D+D +QLVS TT + K +D++ V +K+G+ P +++ Sbjct: 118 ACAARSDDCFLATGDRDSLQLVSDTTTVLLATTALGRSKTVTMDVDAVKEKYGVTPRQLI 177 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK----KRRENILEY 236 +++L GD+ DNIPG+ GIG K+A L+Q+YG+LE + + K K+RE++ E Sbjct: 178 DVKSLMGDTSDNIPGVKGIGEKSAFALIQKYGSLEGVYAHLDDTTDKTIKPKQREHLAED 237 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 A LS L +RTD PI + + N + ++ LE LI R + A Sbjct: 238 RAMAELSYTLGTIRTDAPIDTAEGAYAVGEGNKAEAVRLMQELELHSLIARFGLSDITPA 297 Query: 297 ANIE 300 A+ E Sbjct: 298 ADPE 301 >gi|323342141|ref|ZP_08082374.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464566|gb|EFY09759.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC 19414] Length = 833 Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 153/409 (37%), Positives = 253/409 (61%), Gaps = 13/409 (3%) Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 ++L VYE ++KP++ ++S+ E GI +D+ +L +++ + + +L +Y+L+G +FNL Sbjct: 437 EVLSVYEEIEKPLVPILSKCEFRGINVDRSVLDEIALVTHQKIETLSNQVYELAGMEFNL 496 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 +SPKQL ++LF LK P+ K ++TA D+ + ++ II ILE+R+ K+ ST Sbjct: 497 NSPKQLAEVLFDHLKLPTKKK------RSTAVDVLEGLIEEHAIIAPILEYRKYQKLYST 550 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 YA L HI+ ++HT ++ +T TGRL+S +PNLQNI ++ + + IR+AF++ Sbjct: 551 YAVGLTKHIHA-DGKIHTSFNQHATQTGRLSSSDPNLQNISVRDEETRMIRKAFVASEGC 609 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 L+S DYSQIELR+L+++A + + F DIH A IFGV+ V+ MRR AK+ Sbjct: 610 TLMSIDYSQIELRVLSYLADEKRMMEAFNGGHDIHSETAKAIFGVD--DVTSTMRRQAKS 667 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 +NF I+YG+S + L+ QL I EA +I RY +P I +Y++ ++GYV+T+F Sbjct: 668 VNFGIVYGMSEYGLSKQLDITIPEARHFITRYNEIYPNITKYMDSVVEDCLRDGYVKTLF 727 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + EI ++++ +RAA+NAPIQG+AADI + AMI + L + + M+LQ Sbjct: 728 NRRRYIPEIYDANRAVKDFGKRAAMNAPIQGTAADIIKIAMIKADELLTSNNYKSSMILQ 787 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +HDELVF+V ++E+ ++V ME ++ + L V++ +W Sbjct: 788 VHDELVFDVYDDELEQIQDLMVSVMEHI----VSWPIDLNVSVDTGKDW 832 Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 115/341 (33%), Positives = 182/341 (53%), Gaps = 29/341 (8%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 N L L+DG+S ++RA+Y T LSR + G+ NA+ GF ML K ++ +H Sbjct: 2 NKLLLIDGNSMLFRAYYGT--LSRGYMKSSSGVVTNAVYGFSTMLAKAIEIIN----PTH 55 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD TFR++++ +YK R ++ E L+ Q LVR A+ I E+ G+EADDI Sbjct: 56 VLVAFDTKDKTFRHDMFDEYKGTRKEVDEELVSQFALVREFLDAYPIKRFELSGYEADDI 115 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEK-------IDIEHVIKKWG 173 I T + + F V I+++D+D++QL+ D + +K +D ++ + G Sbjct: 116 IGTMSRMYPD--FKVEILTSDRDMLQLIDDNV---DVLLMKKGLTDLRLMDKTSLMDEMG 170 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P+++V ++AL GD+ DNIPG+P IG KTA LL +Y EN+ ++ IK K E I Sbjct: 171 IEPKQIVDMKALMGDTSDNIPGVPSIGEKTALKLLGQYTTFENLYVHKEEIK-GKMGEKI 229 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E+ E AR+S KL + T VP+ I L + E N L +F + + LI YD Sbjct: 230 REFEEQARMSYKLAEIHTSVPLDIDLSSIKYEIPN-ESLNAFYRKYDMNSLI---TDNYD 285 Query: 294 CDAANIEPVVL-DINTTENKG-IAIETEIDRDTTIKTSQFS 332 + E + +++++ K IAI E+D+ ++ S Sbjct: 286 VEVVEKETIEFTNLDSSWKKSMIAISMELDKKGNLEGCYLS 326 >gi|88608724|ref|YP_506553.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama] gi|88600893|gb|ABD46361.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama] Length = 829 Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 173/491 (35%), Positives = 274/491 (55%), Gaps = 43/491 (8%) Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545 FED+ +++Y L++ + D+ + +L T +E R + Sbjct: 361 FEDLKVIAYPLNTLNT--DLEYLFSHYLGETSREAFHKRLN------------------- 399 Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 +L+ L + EK+L +Y ++DKP+I+ + ME GI +D + L +S +IS Sbjct: 400 -----ELYEKLCNAMFTEKVLTLYYKVDKPLINAIKHMEKNGISLDVEQLLSLSTQISGK 454 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 L +E I+D++G+ F+L SPKQLG +LF +++ P K K+G T + L ++ Sbjct: 455 LEEIESKIFDIAGKTFSLQSPKQLGKVLFEEMQIPVQKKLKSGLSSTDNEVLTSLSIQGY 514 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHIN--KRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 I +L WR K+K+ Y D L +N + R+ T YS T+TGRL+S PNLQNI Sbjct: 515 EIADYLLSWRHYIKLKTAYIDPLLLKVNPNEEKHRISTTYSATLTLTGRLSSSNPNLQNI 574 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 P + ++IR+ F + + ADYSQIELRILA+IA + L + D+H + A+ Sbjct: 575 PRE----KEIRKIFTAKEGHHFLCADYSQIELRILAYIANVERLKCALASGTDLHTLTAS 630 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 +IF +K++P +R AK +NF I+YGI+ F L+ QL I + EAA YI++YF +P I Sbjct: 631 QIFKT--DKITPDLRNKAKAVNFGIVYGITNFGLSKQLAISKEEAASYIQKYFDEYPEIK 688 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 Y+ +N R++ YV+T+ R+ INS +I + ER+AINAPIQG+AADI R A Sbjct: 689 IYMNHIRNQARKDTYVKTMMNRKCPIQNINSNNRTISLVAERSAINAPIQGTAADIIRTA 748 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + ++ +L + M++Q+HDELVFE+ + I ++ I ME++ +PL Sbjct: 749 MV---RMAQEKELLSHMVMQVHDELVFELETDVIQQLAKKIKRIMEESH------GIPLL 799 Query: 964 VNIKVSNNWQE 974 V +K N E Sbjct: 800 VELKHGPNLGE 810 Score = 198 bits (504), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 107/285 (37%), Positives = 165/285 (57%), Gaps = 9/285 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D +F++ A++A P L+ H+ LPV A+ GF N+L K L+ + V D Sbjct: 5 LMIIDAYNFLFSAYFALPNLT--HNELPVGAVYGFLNILLKHLRTK-----PEYLVVALD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + TFR IY +YKANRP +P L PQ L+R + +EI+GFEADD+IAT Sbjct: 58 HGKSTFRETIYNNYKANRPPVPGNLTPQFALLRECVDVLNLNPLEIEGFEADDVIATLVR 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 K + I+STDKDLMQLV+ + + +K I + V +K+G+ P +M +L Sbjct: 118 KFSKSDLKIKILSTDKDLMQLVNENVHVINPIKNRIIGVNEVKEKFGVFPTQMTDFLSLV 177 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPG+PGIG KTAA LL +G +EN +N I + +E++L + + LS++L Sbjct: 178 GDTSDNIPGVPGIGVKTAAKLLNTFGAIENFRLN--EISPARIKESLLRHHDQLTLSKRL 235 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 V L D+ I L+ + + +G +L++FL+ F LI ++ + Sbjct: 236 VSLVDDINIQCSLDCIRYQQQDGTKLLAFLEKYGFKNLIPKLVKS 280 >gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] Length = 886 Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 162/496 (32%), Positives = 272/496 (54%), Gaps = 19/496 (3%) Query: 477 HRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS 536 H + R D+ ++ +++DS +H + +A++WL + + P+ Sbjct: 403 HAVPLEPRALVDLEVLGWLVDSADVAHGLDQLARRWLGRHLDDRGPLEAEAAPLGARQWV 462 Query: 537 QVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 +V H I + L +L + L + ++ P+ V++ MEI G+ ID+D+L Sbjct: 463 EVV-HPIREA---------LERRLTEDDLWRLATDVEIPLTRVLTDMEIHGVAIDRDVLA 512 Query: 597 QVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD 656 + E++ + +G + N +SP+QL +LF +L P+G KTKTG + T A+ Sbjct: 513 AIGTELATERDRALAEVRHYAGGELNPNSPRQLAVVLFERLGLPAGRKTKTG-YSTDARV 571 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 LE + +PI+ IL +R+L K+ ST+ + L + I R+H ++ A TGR++S Sbjct: 572 LESLRDA-HPIVAAILRFRELDKLLSTFYEGLRSEIGA-DGRIHATFNQAVARTGRISSE 629 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQNIP++TD G++ R AF++ L++ADYSQIELR+LAH++ L ++ D Sbjct: 630 RPNLQNIPVRTDEGKRFRDAFVATEGHVLVAADYSQIELRVLAHLSGDEELVRILSGDGD 689 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 +H +VAA +FGV E+V+PQ R AK + + + YG+ + LA +L +P +EA + +F Sbjct: 690 VHTLVAARVFGVPAERVTPQQRSVAKMVTYGLSYGMEAYGLAQRLGVPPAEAEGILADFF 749 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FPG+ Y + + + R G+ T+ GRR + +++SP ++R ER A+NA QG A Sbjct: 750 AAFPGLRHYRDASVDAARAQGFTTTLLGRRRYLPDLDSPNRTVRQGAERQAMNAGTQGLA 809 Query: 897 ADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 ADI + A++ +H +L A ++LQ+HDE+V E E ++ +E A Sbjct: 810 ADIFKIALVRLHAALSPTDGA--LVLQVHDEVVVEAVAERAHDVRALVEDVLEHA----F 863 Query: 957 NLRVPLKVNIKVSNNW 972 LRVPL+V V +W Sbjct: 864 ALRVPLRVQSGVGRSW 879 Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 97/245 (39%), Positives = 135/245 (55%), Gaps = 15/245 (6%) Query: 17 YRAFYA--TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRN 74 +RAFYA P++ R G+ NA+ GF +ML ++ +R +H AV D TFR+ Sbjct: 25 FRAFYALREPMM-RTESGVATNALFGFASMLANVVAQTRP----THLAVALDAEGPTFRD 79 Query: 75 EIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFA 134 I YK R P+ L QL R +A G+PA+E GFEADD+IAT A G A Sbjct: 80 AILESYKGTRAPTPDDLRQQLDAARGLLEAIGVPAVEASGFEADDVIATLATRARDAGIA 139 Query: 135 VTIISTDKDLMQLV-SPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCLQALTGDS 189 I++ D+DL+QLV P + T K E D V++ +G+PP + L +L GDS Sbjct: 140 TRIVTGDRDLLQLVEDPLIVVLLTRKGVSNLEAFDEAKVLETYGVPPARYGDLASLRGDS 199 Query: 190 IDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL-SRKLVM 248 DN+PG+PGIG KTAA LL + ++E IL + + ++R LE A + L +R L Sbjct: 200 SDNLPGVPGIGPKTAAALLDRFESIEGILAHLDALSARQR--EALEQARSQLLEARLLTQ 257 Query: 249 LRTDV 253 LR DV Sbjct: 258 LRRDV 262 >gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5] gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5] Length = 909 Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 180/531 (33%), Positives = 292/531 (54%), Gaps = 24/531 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 L + + K+ H+ K L +G ++G D + +Y+ + S+D+ +A + Sbjct: 387 LAGWLADAERPKVLHDSKPAVLAFAAHGWELQGIARDTQIAAYLARPDQRSYDLTDLALR 446 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--------E 563 +L + + + +D + D V E N++LQ L + E Sbjct: 447 YL-HRELRVDAPETGQLTLDGLGDEGVAEQ-----NLMLQARATLDLADAIDAELSRDGE 500 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 + + ++ P++ V++ ME TGI D D L ++ A + + + + Y++ G +FNL Sbjct: 501 QSARLMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEVVGREFNL 560 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKS 682 SPKQL +ILFT+L P + KTG + T A L+ + ++P++ ++L R ++K+KS Sbjct: 561 GSPKQLQEILFTELGLPKTKRIKTG-YTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKS 619 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPP 741 T D L ++ R+HT ++ TGRL+S EPNLQNIPI+T+ G++IRRAF+ Sbjct: 620 T-VDGLLKSVSD-DGRIHTTFNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGEG 677 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 + L++ADYSQIE+RI+AH++ L + F + D H A+ +F V + V+ RR Sbjct: 678 YECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFHAATASSVFTVEVGDVTADQRRKI 737 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +N+ + YG+S F L+ QL I EA ++ YF F G+ +Y+++ RQ+GY T Sbjct: 738 KAMNYGLAYGLSAFGLSQQLGISAEEARGLMENYFAGFGGVRDYLQEVVARARQDGYTST 797 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 I GRR + ++ S R + ER A+NAPIQGSAADI + AM+ V +L D L ++ML Sbjct: 798 ILGRRRYLPDLVSDNRQRREMAERMALNAPIQGSAADIIKVAMLHVDSALRDAGLRSRML 857 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LQ+HDELVFEV E T ++ M +A L VPL+V++ ++W Sbjct: 858 LQVHDELVFEVAPGERETLEALVRKQMGEA----YPLSVPLEVSVGEGHDW 904 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L LVDG S YRAF+A P+ + G P NA+ GF +ML +L++ + +H V F Sbjct: 18 LLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQP----THIVVAF 73 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR + Y +YKA R + P Q+ LV+ A +P +E +G+EADD+IAT Sbjct: 74 DVSRRSFRTDRYAEYKAGRSETPTDFKGQVSLVKEVLAALRVPVVEKEGYEADDVIATLA 133 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A +G V I + D+D QLV T LY ++D V K+G+ P++ Sbjct: 134 CQARDQGMDVLITTGDRDAFQLVGERVTVLYPRKGVSDLARMDPAAVEAKYGVTPDRYRD 193 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 L AL G++ DN+PG+PG+G KTAA + YG +E ++ A IK K Sbjct: 194 LAALVGETSDNLPGVPGVGPKTAAKWINLYGGVEGVVARADEIKGK 239 >gi|206603236|gb|EDZ39716.1| DNA polymerase I [Leptospirillum sp. Group II '5-way CG'] Length = 872 Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 162/426 (38%), Positives = 250/426 (58%), Gaps = 14/426 (3%) Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 N++ +LW + E LL + + ++ P+ ++ QME+ G++ID+ L+ I Sbjct: 455 NILSRLW----DDAVKEGLLELVQSIEIPLGRILYQMEVLGVRIDRQALESARESIEALS 510 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666 LEE IY L+G +F + SPKQ+G+IL+ KL P+ K KTG + T + L +++ +P Sbjct: 511 RELEEEIYRLAGSRFTILSPKQVGEILYGKLGLPTARKGKTG-YSTDEETLTRLSA-LHP 568 Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 + + IL +RQ+ K+ STY D + I+ + R+H ++ T TGRL+S PNLQNIP++ Sbjct: 569 LPEKILAYRQMKKLLSTYVDPIARGIDAQG-RLHGQFNQTVTATGRLSSSNPNLQNIPMR 627 Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 + G++IR+ FI+ + L+SADYSQIELR+LAH ++ L VFE + DIH A +F Sbjct: 628 SPAGREIRKCFIAGENRVLLSADYSQIELRLLAHFSEDPELMAVFERNEDIHARTARLLF 687 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 G + V+P+ RR AKTINF I+YG+S F L+ L + EA +I RYF FP + Sbjct: 688 G---DPVTPETRRKAKTINFGILYGMSAFSLSQDLGVESQEAQAFIDRYFGAFPKVGPLF 744 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 + ++ G V TI GR+ E+ + R ER A+N +QGSAAD+ +++M+ Sbjct: 745 DSILEEAKKTGEVRTILGRKRRIPELFASDRRSREYGERMAVNTVLQGSAADLIKKSMVD 804 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 + +D +L+Q+HDEL+FEV E+ + AS I ME A + L+VPL V + Sbjct: 805 FGQVRKDRPEIGDLLVQVHDELLFEVREDNLDEASGTIRSLMEGA----LRLKVPLVVQV 860 Query: 967 KVSNNW 972 NW Sbjct: 861 GQGKNW 866 Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 107/321 (33%), Positives = 171/321 (53%), Gaps = 13/321 (4%) Query: 7 LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG +I+RA+++ ++R GLP AI F NML +L KE S AV+F Sbjct: 26 LVLMDGFGYIFRAYHSRVTFVTRA--GLPTGAITVFGNMLLSVL----KELSPSAMAVVF 79 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 + R EI P+ KANRP+ P L Q+P + + G+P + G+EADD IA Sbjct: 80 ESRTGNVRTEILPEIKANRPEPPSDFLQQIPYIERLIRGIGVPLLSTDGYEADDTIAALA 139 Query: 126 ------YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 + K V I+S+DKDL+ LVS +YD + ++ + V +KWG+ P ++ Sbjct: 140 AKWLKQHDRTKVPCHVVILSSDKDLLTLVSERVWVYDPMTKKVLGPSDVREKWGVEPWQI 199 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L ALTGD+ DNIPG+PGIG KTAA LL G ++ + + + ++ R + E+ E Sbjct: 200 PDLLALTGDTADNIPGVPGIGQKTAAKLLGNQGTIDTLYEDLDNVVPERIRALLREHRER 259 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 ++K+ +L D+ +++ E L L + L S L+ LE L++RV T + ++ Sbjct: 260 VFRNKKVTVLHADLTLSLEPESLSLSPPDMDSLKSLLQELEAPGLLSRVQRTLELRKPSL 319 Query: 300 EPVVLDINTTENKGIAIETEI 320 P TT + + ++++ Sbjct: 320 APEEKKRRTTSERRLPFQSDL 340 >gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381] gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381] Length = 875 Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 197/607 (32%), Positives = 325/607 (53%), Gaps = 33/607 (5%) Query: 372 VNTKD-IQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFID 430 V+TK+ + + LE + +F T ++D+ ++K + + D+K +SF V + Sbjct: 296 VSTKEQADKILNDLENVKEIAFDTETTSVDSHNAKIVGFSF-CWDEK--SSFYVP---LA 349 Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRG-FED 488 S + D KN + I + KF IG N+KYD ++V + +G++ + D Sbjct: 350 HSYLGAPDMLDKNIAKRLIEAIYTKFI-------IGQNLKYDFRIVRNNFGLNPPAKYAD 402 Query: 489 IMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNV 548 M++++++D S + ++A+++ Y + K + +A E++ + Sbjct: 403 TMILAWLMDPDNSVG-MDNLAKRYFDYDTIKFENVVKKGENFSSVDVKNAANYASEDAWI 461 Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608 L+ + L E LL + + L+ P I V+ ME GI++D LK++ EI++ L Sbjct: 462 TLKFYKKFCGILSTE-LLDLAKNLEFPFIKVLLNMEENGIKMDISSLKEMINEIAEQLKI 520 Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668 L IYDLSGE FN++S KQLG++LF L P+ KTKTG + T L I+ + ++ Sbjct: 521 LTNEIYDLSGENFNINSTKQLGEVLFEHLGLPAKKKTKTG-YSTNESALSAIS-ELHAVV 578 Query: 669 KNILEWRQLSKIKSTYADS-LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 IL +R+L K++STY + L + R+ + + T TGRL+S PNLQNIP Sbjct: 579 PKILAYRELYKLQSTYTEPLLALALKNDENRIFSNFLQTGTSTGRLSSKNPNLQNIPAHG 638 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 + ++R F+S + DYSQIELR+LAH + L + F DIH A IFG Sbjct: 639 SMAVQMRNCFVSKDGFSFVGLDYSQIELRLLAHFSLDKELLRAFREDEDIHSRTAISIFG 698 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 + + R AKTINF +IYG+ +L+ +L I RS+A DYI++YF F I ++E Sbjct: 699 TS----DKEKRAVAKTINFGLIYGMGASKLSNELGISRSDAKDYIEKYFKAFASIKNFME 754 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 K+ ++NGY T+FGR+ ++D N+ + ER ++N QGSAADI ++AM+ + Sbjct: 755 NLKSEAKKNGYTTTLFGRKRYFDFANATPMQFA-MYERESVNTKFQGSAADIIKKAMVEI 813 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 L ++ T++LLQIHDEL+FEV ++ S+ M++ + L VPLK ++ Sbjct: 814 SPFLNEN---TRLLLQIHDELIFEVRDD----MSESFGKKMQEIMQNVVKLNVPLKTSLS 866 Query: 968 VSNNWQE 974 ++ W + Sbjct: 867 INKRWGD 873 Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 108/325 (33%), Positives = 167/325 (51%), Gaps = 28/325 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R FYA L K DG P I+GF N + N + E + + D Sbjct: 4 LTIIDTFGFFFRLFYALSSLKNK-DGKPSGMISGFAN----FIANLKNEFNSDYIVFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++I P+YKANRP+ P+ LL QLP+ + G+ + +G+EADDIIA++ Sbjct: 59 SKGKTFRSDIDPNYKANRPEPPKALLDQLPVCIEMIEKMGLCSFCQEGYEADDIIASFVK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 K + I++ DKDL QL+ +Y K+ D + +K+G+ PE++ + Sbjct: 119 KYSK-NMQINIVTHDKDLYQLIGENVRVYSPAKKMLYDRDGCFEKYGVWPEQVRDFLGIC 177 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPGI GIG K A LL+ +G+LE I N + Q ++++ ++E E A +S+KL Sbjct: 178 GDSADNIPGIKGIGEKGAKKLLENFGSLEKIYENIDNLPQNRQKDLLIEGKENAFMSKKL 237 Query: 247 V----------MLRTDVPITIPLEHL--ILEDCNGPRLISFLKALEFT-KLINRVATTYD 293 +L + P PL + IL++ N R++S L+ + T K +N A T Sbjct: 238 ASLYDGLEVPDLLGAEFPTENPLLKITEILKEYNLNRILSALENSKDTDKTLNFKAITVS 297 Query: 294 C---------DAANIEPVVLDINTT 309 D N++ + D TT Sbjct: 298 TKEQADKILNDLENVKEIAFDTETT 322 >gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2] Length = 892 Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 171/512 (33%), Positives = 284/512 (55%), Gaps = 13/512 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K L G + G D L SY+L R +H + L+ E + Sbjct: 386 KVMHSAKGPVEALAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEE 445 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + ++ +D D + ++E + + +L ++ ++ + ++ + + Sbjct: 446 NSDQAM-LDFGEDHFAE--SMERAVAVTRLADVMEKEVEARGGAELLHDVEMGVQRCLIS 502 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D D+ + + +E + + +E ++ +GEK NLSSPKQL +LF KL P Sbjct: 503 MERAGIAVDTDIFEGLRSEFDERVTRAQEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562 Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TK+G + T A L + ++P + ++LE R K++ T D L I + RVHT Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y +TGRL+S +PNLQNIP++T+ G++IR + + L+SADYSQIE+RI+AH Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGVVVGEGYESLLSADYSQIEMRIMAH 679 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ D H + A+ +FGV E VS R K +N+ + YG+S + L+ Q Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ EA + + YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ++ ERAA+NAPIQGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ ++M A ++L VPL V+I V +W Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887 Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 13/311 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 9 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 65 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALRIVHLSKENYEADDILATLS 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ +PP + Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVPPARYPE 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A +K K ++ ++ + Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298 +RKL L D+ + + L L + + LEF L +RV AT D D + Sbjct: 244 RNRKLNALVRDLDLDLTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303 Query: 299 IEPVVLDINTT 309 L+I+ T Sbjct: 304 EVDDTLEISGT 314 >gi|300787986|ref|YP_003768277.1| DNA polymerase I [Amycolatopsis mediterranei U32] gi|299797500|gb|ADJ47875.1| DNA polymerase I [Amycolatopsis mediterranei U32] Length = 882 Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 168/519 (32%), Positives = 294/519 (56%), Gaps = 16/519 (3%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K GH++K + G + G D L +Y++ G+ + ++ +A ++L + Sbjct: 369 KTGHDLKTPLHAIRARGWVLSGLAMDTALAAYLVRPGQRTFELDDLALRYLHRELRSETD 428 Query: 523 SRKSSIPI-----DKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 + + + + ++Q+ ++ + I +L L +L + L+ P++ Sbjct: 429 GGDGQLSLLDGGAEGLEQKEIQDELVK-ARAIFELAGALEKELEQIGGAKLLAELELPLL 487 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 +V++++EI G+ +D + L + A + E Y + G++ NL SPKQL +LF +L Sbjct: 488 EVITELEIAGVAVDLEQLTTLEAHYLSRVTQAAEEAYAVIGKQINLGSPKQLQVVLFDEL 547 Query: 638 KFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 P +TKTG + T A+ L+ + ++P ++++LE R +K+++T + + + Sbjct: 548 GMPKTKRTKTG-YTTDAEALQGLFEKTEHPFLQHMLEHRDATKLRTTVEGLIKSVADD-- 604 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIEL 755 R+HT TGRL+S EPNLQNIP++T+ G++IR AF+ +L++ADYSQIE+ Sbjct: 605 GRIHTTLLQTIAATGRLSSTEPNLQNIPVRTEEGRRIRDAFVVGEGFTELMTADYSQIEM 664 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 RI+AH+++ L + F + D+H VA+ F + E+++P++R K +++ + YG+S + Sbjct: 665 RIMAHLSQDEGLIEAFNSGEDLHTFVASRAFSMPPEEITPELRYRVKAMSYGLAYGLSAY 724 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 L+ QLRI +A ++ YF RF G+ +Y+ +NGY ET+FGRR + ++NS Sbjct: 725 GLSQQLRISTEDAKSQMEAYFDRFGGVRDYLHSVVGVAAKNGYTETVFGRRRYLPDLNSD 784 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 R + ER A+NAPIQGSAADI + AM++VH++L + KL +++LLQ+HDELV EV E Sbjct: 785 NRQRREMAERMALNAPIQGSAADIIKVAMLNVHRALVEAKLKSRILLQVHDELVLEVAEG 844 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E Q++ M A L VPL+V++ +W E Sbjct: 845 EKEQLEQLVREGMGSAY----ALAVPLEVSVGYGRSWNE 879 Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 99/280 (35%), Positives = 151/280 (53%), Gaps = 10/280 (3%) Query: 17 YRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75 YRAF+A P + K G NA+ GF +ML LL ++ +H AV FD TFR+E Sbjct: 3 YRAFFALPAENFKTKTGQVTNAVFGFTSMLINLL----RDEAPTHLAVAFDLSRKTFRSE 58 Query: 76 IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135 + DYKANR P+ Q+ LV+ GIP++ + FEADDIIAT T A +GF V Sbjct: 59 TFADYKANRSTTPDEFRGQVDLVKEVLDVLGIPSLVKENFEADDIIATLTTQATADGFDV 118 Query: 136 TIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191 I + D+D +QLV+ T LY + + + V +K+G+ P + AL GD D Sbjct: 119 LICTGDRDALQLVTEHVTVLYPKRGVSEMTRFTPDAVEEKYGLTPRQYPDFAALRGDPSD 178 Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251 N+P IPG+G KTAA ++++G+L++++ +K K + + + + +L+R+L L Sbjct: 179 NLPSIPGVGEKTAAKWIKQFGSLDDLIDRVDEVKGKV-GDALRAHLSSVQLNRQLTELIR 237 Query: 252 DVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 DV + I L L + + + LEF L +R+ T Sbjct: 238 DVELEIAPSGLELRPWDREAVHALFDELEFRVLRDRLFAT 277 >gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] Length = 899 Score = 290 bits (742), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 180/531 (33%), Positives = 291/531 (54%), Gaps = 24/531 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 L + + K+ H+ K L +G + G D + +Y+ + S+D+ +A + Sbjct: 377 LAGWLADAERPKVLHDSKPAVLAFAAHGWELHGIARDTQIAAYLARPDQRSYDLTDLALR 436 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV--------E 563 +L + + + +D + D V E N++LQ L + E Sbjct: 437 YL-HRELRVDAPETGQLTLDGLGDEGVAEQ-----NLMLQARATLDLADAIDAELSRDGE 490 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 + + ++ P++ V++ ME TGI D D L ++ A + + + + Y++ G +FNL Sbjct: 491 QSARLMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAYEVVGREFNL 550 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKS 682 SPKQL +ILFT+L P + KTG + T A L+ + ++P++ ++L R ++K+KS Sbjct: 551 GSPKQLQEILFTELGLPKTKRIKTG-YTTDADALQWLFAQTEHPLLHHLLRHRDVAKLKS 609 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPP 741 T D L ++ R+HT ++ TGRL+S EPNLQNIPI+T+ G++IRRAF+ Sbjct: 610 T-VDGLLKSVSD-DGRIHTTFNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGEG 667 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 + L++ADYSQIE+RI+AH++ L + F + D H A+ +F V + V+ RR Sbjct: 668 YECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFHAATASSVFTVEVGDVTADQRRKI 727 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +N+ + YG+S F L+ QL I EA ++ YF F G+ +Y+++ RQ+GY T Sbjct: 728 KAMNYGLAYGLSAFGLSQQLGISAEEARGLMENYFAGFGGVRDYLQEVVARARQDGYTST 787 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 I GRR + ++ S R + ER A+NAPIQGSAADI + AM+ V +L D L ++ML Sbjct: 788 ILGRRRYLPDLVSDNRQRREMAERMALNAPIQGSAADIIKVAMLHVDSALRDAGLRSRML 847 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LQ+HDELVFEV E T ++ M +A L VPL+V++ ++W Sbjct: 848 LQVHDELVFEVAPGERETLEALVRKQMGEA----YPLSVPLEVSVGEGHDW 894 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L LVDG S YRAF+A P+ + G P NA+ GF +ML +L++ + +H V F Sbjct: 8 LLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQP----THIVVAF 63 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR + Y +YKA R + P Q+ LV+ A +P +E +G+EADD+IAT Sbjct: 64 DVSRRSFRTDRYAEYKAGRSETPTDFKGQVSLVKEVLAALRVPVVEKEGYEADDVIATLA 123 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A +G V I + D+D QLV T LY ++D V K+G+ P++ Sbjct: 124 CQARDQGMDVLITTGDRDAFQLVGERVTVLYPRKGVSDLARMDPAAVEAKYGVTPDRYRD 183 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 L AL G++ DN+PG+PG+G KTAA + YG +E ++ A IK K Sbjct: 184 LAALVGETSDNLPGVPGVGPKTAAKWINLYGGVEGVVARADEIKGK 229 >gi|145295490|ref|YP_001138311.1| DNA polymerase I [Corynebacterium glutamicum R] gi|140845410|dbj|BAF54409.1| hypothetical protein [Corynebacterium glutamicum R] Length = 880 Score = 290 bits (742), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 192/603 (31%), Positives = 313/603 (51%), Gaps = 36/603 (5%) Query: 373 NTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLS 432 +T+ + QW+ G A +T A+AI+ DT K + +DL+ Sbjct: 306 DTQSLAQWLPA--RAGQALALALTGVAKPAGGDAYALAIA------DT--KHHAVLVDLA 355 Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIML 491 +++D K + ++L EN L H K +L G + G D + Sbjct: 356 DISAEDE-------KALATWLAS--ENPKML---HGAKAAYHMLAGRGFELHGVVHDTAI 403 Query: 492 MSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQ 551 +Y+L G+ ++++A + Q+ L R+ + + +D Q +++ IL+ Sbjct: 404 AAYLLRPGQRTYELADVYQRHLQ--RQLSTNDNGGQLALLDAADDQ---SLVDDVIAILE 458 Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID-QDLLKQVSAEISKNLLSLE 610 L L +L + +Y L+ P+ ++++ME GI +D L +Q+ I + E Sbjct: 459 LSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLKTFIGQVAQEEE 518 Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670 NLSSPKQL +LF P KTKTG A+ +P + + Sbjct: 519 AARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEALAIKNPHPFLDH 578 Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730 +L RQ K+K+T + L + R+HT ++ TGRL+S +PNLQNIP++T+ G Sbjct: 579 LLAHRQYQKMKTTL-EGLIREVAP-DGRIHTTFNQTVASTGRLSSTDPNLQNIPVRTEAG 636 Query: 731 QKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789 +KIR F+ + L++ADYSQIE+R++AH+++ L + + D+H V +++F V Sbjct: 637 RKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKVFNVP 696 Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849 I+ V+P++RR K +++ ++YG+S F L+ QL IP EA ++ YF RF G+ Y+ + Sbjct: 697 IDGVTPELRRQVKAMSYGLVYGLSAFGLSQQLSIPAGEAKQIMESYFERFGGVQRYLREI 756 Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 R+ GY ET+FGRR + E+ S R ERAA+NAPIQG+AADI + AMI V + Sbjct: 757 VEEARKAGYTETLFGRRRYLPELTSDNRVARENAERAALNAPIQGTAADIIKVAMIRVDR 816 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 SL++ + +++LLQ+HDELV EV E+ +I+ M+ A I L VPL+V+ Sbjct: 817 SLKEAAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNA----IKLSVPLEVSAGDG 872 Query: 970 NNW 972 NW Sbjct: 873 VNW 875 Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 149/287 (51%), Gaps = 11/287 (3%) Query: 8 FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+DG S +RAF+A P + G NA+ GF +ML LL++ + +H AV FD Sbjct: 1 MLIDGHSMAFRAFFALPAENFSTSGGQATNAVYGFLSMLSTLLKDEQP----THVAVAFD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR +++P YKA R P Q+ +++ GI IE FEADD+IAT + Sbjct: 57 VGRKTFRTDMFPAYKAQRDATPPEFKGQVEILKEVLSTLGITTIEKIDFEADDVIATLSV 116 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 A+ GF I++ D+D QLV+ TT + +K + E V +K+G+ P + Sbjct: 117 AAKPLGFKTLIVTGDRDSFQLVNDTTTVLYPMKGVSVLHRFTPEAVEEKYGLTPRQYPEF 176 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD DN+P IPG+G KTA + +Y L+N+L +A IK K ++ E E R+ Sbjct: 177 AALRGDPSDNLPNIPGVGEKTATKWIAQYETLDNLLDHADEIK-GKVGASLRERIEQVRM 235 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRV 288 +RKL + D+ + + + ++ + + LEF T L RV Sbjct: 236 NRKLTEMVKDLELPLGPDDFDMKPVQVAEVAAKFDDLEFGTNLRERV 282 >gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] Length = 908 Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 171/514 (33%), Positives = 280/514 (54%), Gaps = 14/514 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K V +G S+ G D L +Y++ GR S D+ +++ L Y +E+ Sbjct: 401 KVFHDAKSAMRVFAEHGWSIEGVTMDTALAAYLVKPGRRSFDLDALS---LEYLHRELAP 457 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + + +D + A+ + IL L +L + ++ P +++ Sbjct: 458 AAVADGQLAFGADEGAEAEALMVQARAILDLGEAFGSRLEEVGAADLLRDMELPTSALLA 517 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +ME GI D+ L+ + + + + + +G +FNL SPKQL ++LF +L P Sbjct: 518 RMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELALPK 577 Query: 642 GAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 +TKTG + T A L + DN + +L R+ +K++ T + L I R+H Sbjct: 578 TKRTKTG-YTTDADALAWLATQTDNELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIH 634 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759 T ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQIELR++A Sbjct: 635 TTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLLTADYSQIELRVMA 694 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H+++ L + F + D+H AA++F V V +MRR K +++ + YG+S F L+ Sbjct: 695 HLSEDEGLIEAFTSGEDLHTTAAAQVFAVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQ 754 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL I +EA + YF R+ G+ +Y+ + + R GY T+FGRR + +++S Sbjct: 755 QLNIEAAEARALMDAYFERYGGVRDYLRRVVDEARATGYTATLFGRRRYLPDLSSDNRQR 814 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER A+NAPIQG+AADI + AM+ V +L + LA++MLLQ+HDE+V EV E Sbjct: 815 REAAERMALNAPIQGTAADIVKIAMLKVDGALRETDLASRMLLQVHDEIVLEVAPGERPA 874 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +++ M A + LRVPL V++ V NW+ Sbjct: 875 VEELVRREMADA----VRLRVPLGVSVGVGPNWE 904 Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 100/255 (39%), Positives = 147/255 (57%), Gaps = 10/255 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P+ + G P NAI GF +ML N+ ++ +HFAV F Sbjct: 20 LMLMDGHSLAYRAFFALPVENFTTATGQPTNAIYGFASML----ANTLRDEAPTHFAVAF 75 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R+E + +YKANR K P+ Q+ L+ A P ++G+EADD+IAT Sbjct: 76 DVSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAPRFAVEGYEADDVIATLA 135 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EGF V I++ D+D QLVS TT LY T V E + E V++K+G+ P + Sbjct: 136 TQAEAEGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVVEKYGLTPAQYPD 195 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ +K K +N+ ++ E + Sbjct: 196 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVDEVKGKA-GQNLRDHLEAVK 254 Query: 242 LSRKLVMLRTDVPIT 256 L+R+L L V ++ Sbjct: 255 LNRRLTELERRVELS 269 >gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029] gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138] gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029] gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138] Length = 870 Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 191/530 (36%), Positives = 295/530 (55%), Gaps = 14/530 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 +IL LK FF E G+N+K D L GI +R D+ L ++ + G + Sbjct: 351 KILPILKDFFLREDLTFYGYNLKRDCHALLNAGIVIREISYDLALAEHLTNGGGKISFQS 410 Query: 507 SIAQKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 + + T K S +PI ++ + Q +++ E + + + ++ + L Sbjct: 411 LLVNHGFTETAHRFAKEWGNSGLPIGRLPE-QPEQYFGEFVAYLPIIKDAILEEINRKNL 469 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 H+ ++ P+ V+ ME G+ +D + L + A L L E IYDLSG FN+ S Sbjct: 470 NHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLTEEIYDLSGRPFNIKS 529 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQL DIL+ +L K K+ T A+ LE + ++PII+ +L +R + K+ STY Sbjct: 530 PKQLSDILYNELGLRPIDKAKS----TRAEVLEALRS-EHPIIEKLLAFRTIEKLLSTYV 584 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKK 744 +LP ++ TQR+H + +TGRLA +PNLQNIPI+++ G +R+AF +S Sbjct: 585 KALPKQVDSHTQRIHPSFDQTGAVTGRLACRDPNLQNIPIRSERGILLRKAFRLSEKNSY 644 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 +SADYSQIELR LAH+++ L FE+ DIH A+++F V +E+VS + R AKT+ Sbjct: 645 FLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTV 704 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YG F LA L+I EA + I+ YF R+P I ++E+T ++ V T+ G Sbjct: 705 NFGIVYGQQAFGLAKVLKISIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLG 764 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 R D N S R + R A+N IQGSAA++ + AM+ + ++++ ++ ++MLLQI Sbjct: 765 RERIIDSWNEFPGS-RAASGRFAVNTRIQGSAAELIKLAMLDISQAIKQQQMKSRMLLQI 823 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL+FEVPEEEI +++ ME A + L VP+ VNI + NW E Sbjct: 824 HDELLFEVPEEEIEEMQRLVREKMESA----MTLSVPIVVNILIGKNWAE 869 Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 97/258 (37%), Positives = 152/258 (58%), Gaps = 8/258 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LF++D S FI+RA++A P + + H G A+ GF L KL++ E + S +FD Sbjct: 4 LFVLDASGFIFRAYFALPEM-KNHQGQATQAVFGFIRSLNKLIKEFSPEYMIS----VFD 58 Query: 67 YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P R IY DYK+NR K E + PQ+ LV+ G+ +E + EADD+IA+ Sbjct: 59 GPNNKQSRQAIYADYKSNRQKKFEDIPPQIALVKEYCSLIGLAYLEKESVEADDVIASIA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184 A +E + V + + DKDL+QLV+ ++ ++ + I VI+++GIPP + A Sbjct: 119 KKAREENYKVYVCTADKDLLQLVNDHVVAWNPWADQGVVGISEVIERYGIPPGNIPDYLA 178 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS DNIPG+PG G K AA LL+++G++E +L N +K + + E ET +LS+ Sbjct: 179 LVGDSSDNIPGLPGCGPKKAAALLKQFGSVEGLLENLDAVKGLSQT-MLSERQETLKLSK 237 Query: 245 KLVMLRTDVPITIPLEHL 262 +L +L +++PI +P+E L Sbjct: 238 RLALLDSNIPIPVPIESL 255 >gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1] gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1] Length = 829 Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 164/408 (40%), Positives = 243/408 (59%), Gaps = 10/408 (2%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L +Y ++ P+ V+ +ME G+ + L ++ E+ + + +E I++L+GEKFNL+ Sbjct: 431 LYRLYAEVEHPLSYVLYKMEKRGVPFSEKALMELERELEEKISEVETKIFELAGEKFNLN 490 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 SPKQL +LF KL KT++G + T + L + + I +IL++R+LSK+ S++ Sbjct: 491 SPKQLSKVLFEKLGLKPVKKTRSG-YSTDVETLTTLALEGHEIAVHILDYRKLSKLLSSF 549 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 +L I++ T RVH + T TGRL+S EPNLQN+P+ L ++RRA +P Sbjct: 550 VKALLKRIDE-TGRVHGNFIQTGTATGRLSSAEPNLQNLPVSDPLSLRVRRAVRAPEGYT 608 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L+ ADYSQ+ELRILAH+++ L + F DIH A +F + +++ + RR AKT+ Sbjct: 609 LVWADYSQVELRILAHLSQDRNLIEAFLKGEDIHTETAKHLF--HTRQITDRERRVAKTV 666 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF IIYG+SP LA +L IP EA DYI+RYF +FP + E+IE+T + G+VET FG Sbjct: 667 NFGIIYGMSPHGLAERLSIPLQEAKDYIERYFQKFPKVREFIEETVREAYKKGFVETAFG 726 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR E+ R+ ERAA+N IQG+AADI + AM+++ E KL + ++LQ+ Sbjct: 727 RRRPLPELKEKSFHKRSFGERAAVNTVIQGTAADIMKMAMVNLQP--EAEKLNSYIILQV 784 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 HDELV E PE + + ME A NL VPL V +K W Sbjct: 785 HDELVLEAPEGAEEEVAAKVKQVMEGAA----NLSVPLTVEVKSGKEW 828 Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 168/292 (57%), Gaps = 10/292 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + +FL DG+ Y+A++A LS DG P NA+ GF + K+L +E + AV Sbjct: 2 DRVFLFDGTGLAYKAYHAIKGLSTT-DGFPTNAVYGFARLFLKML----RELKPRYCAVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+EI DYKANR P+ QLP ++ + G+ +E+ G+EADDII T Sbjct: 57 FDAGRKTFRSEISKDYKANRKPTPDDFKVQLPYIKEFLKCLGVKVLELPGYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEK---IDIEHVIKKWGIPPEKMV 180 +++GF V I+++DKD+ QL+SP + L +EK ID ++ GI PE + Sbjct: 117 VKRLQEKGFEVVIVTSDKDMKQLLSPRVSILVPPKGKEKAKWIDYSSFKEETGIEPETVP 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L L+GD DNIPG+PGIG KTA LL+E+ NLE I N R+ K +RE + ++ E+A Sbjct: 177 DLFGLSGDRTDNIPGVPGIGEKTALKLLREFKNLEGIYENLDRL-PKGQREKLEKHRESA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 SR+L + T+ P+ + LE L+L++ NG L ++ L+ L + + Sbjct: 236 FKSRELARIETNAPVDVALEELLLKEPNGECLGKLIEKLQMRSLYGEIEKLF 287 >gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183] gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183] Length = 870 Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 191/530 (36%), Positives = 295/530 (55%), Gaps = 14/530 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 +IL LK FF E G+N+K D L GI +R D+ L ++ + G + Sbjct: 351 KILPILKDFFLREDLTFYGYNLKRDCHALLNAGIVIREISYDLALAEHLTNGGGKISFQS 410 Query: 507 SIAQKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 + + T K S +PI ++ + Q +++ E + + + ++ + L Sbjct: 411 LLVNHGFTETAHRFAKEWGNSGLPIGRLPE-QPEQYFGEFVAYLPIIKDAILEEINRKNL 469 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 H+ ++ P+ V+ ME G+ +D + L + A L L E IYDLSG FN+ S Sbjct: 470 NHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLTEEIYDLSGGPFNIKS 529 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQL DIL+ +L K K+ T A+ LE + ++PII+ +L +R + K+ STY Sbjct: 530 PKQLSDILYNELGLRPIDKAKS----TRAEVLEALRS-EHPIIEKLLAFRTIEKLLSTYV 584 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKK 744 +LP ++ TQR+H + +TGRLA +PNLQNIPI+++ G +R+AF +S Sbjct: 585 KALPKQVDSHTQRIHPSFDQTGAVTGRLACRDPNLQNIPIRSERGILLRKAFRLSEKNSY 644 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 +SADYSQIELR LAH+++ L FE+ DIH A+++F V +E+VS + R AKT+ Sbjct: 645 FLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTV 704 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF I+YG F LA L+I EA + I+ YF R+P I ++E+T ++ V T+ G Sbjct: 705 NFGIVYGQQAFGLAKVLKISIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLG 764 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 R D N S R + R A+N IQGSAA++ + AM+ + ++++ ++ ++MLLQI Sbjct: 765 RERIIDSWNEFPGS-RAASGRFAVNTRIQGSAAELIKLAMLDISQAIKQQQMKSRMLLQI 823 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL+FEVPEEEI +++ ME A + L VP+ VNI + NW E Sbjct: 824 HDELLFEVPEEEIEEMQRLVREKMESA----MTLSVPIVVNILIGKNWAE 869 Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 97/258 (37%), Positives = 152/258 (58%), Gaps = 8/258 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 LF++D S FI+RA++A P + + H G A+ GF L KL++ E + S +FD Sbjct: 4 LFVLDASGFIFRAYFALPEM-KNHQGQATQAVFGFIRSLNKLIKEFSPEYMIS----VFD 58 Query: 67 YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P R IY DYK+NR K E + PQ+ LV+ G+ +E + EADD+IA+ Sbjct: 59 GPNNKQSRQAIYADYKSNRQKKFEDIPPQIALVKEYCSLIGLAYLEKESVEADDVIASIA 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184 A +E + V + + DKDL+QLV+ ++ ++ + I VI+++GIPP + A Sbjct: 119 KKAREENYKVYVCTADKDLLQLVNDHVVAWNPWADQGVVGISEVIERYGIPPGNIPDYLA 178 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GDS DNIPG+PG G K AA LL+++G++E +L N +K + + E ET +LS+ Sbjct: 179 LVGDSSDNIPGLPGCGPKKAAALLKQFGSVEGLLENLDAVKGLSQT-MLSERQETLKLSK 237 Query: 245 KLVMLRTDVPITIPLEHL 262 +L +L +++PI +P+E L Sbjct: 238 RLALLDSNIPIPVPIESL 255 >gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985] gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985] Length = 903 Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 183/546 (33%), Positives = 286/546 (52%), Gaps = 15/546 (2%) Query: 435 TSQDSTGK----NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DI 489 S D +G LT + L + + K H K+ L G S+ G DI Sbjct: 360 ASPDGSGAAIKTEALTAHDTAALGAWLADPAAPKAFHEAKWAAHALRGQGFSIAGVTTDI 419 Query: 490 MLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-AIENSNV 548 L +Y+ G+ S + +A ++L +K +D D + + A+ + Sbjct: 420 GLAAYIARPGQRSFQLPDLAVRYLRRQLGPDDSGQKQLSLLDAEQDDNAEANGAVSEAAA 479 Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608 I +L L L + ++ P+ V+ ME GI +DQD L + A+ S + Sbjct: 480 IRELGEALDDVLAKAGSADLLHTMELPLTFVLGAMEEAGIAVDQDALAGLHADFSARVQQ 539 Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPI 667 E+ Y + G++ NL SPKQL +LF +L P KTKT T A L+ + ++P Sbjct: 540 AAESAYAVIGKEINLGSPKQLQVVLFDELGMPKTKKTKT-GHTTDADALQWLFERTEHPF 598 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 + ++LE R +++ +T A L + R+HT + TGRL+S +PNLQNIP++T Sbjct: 599 LSHLLEHRDATRLMTT-AQGLIKAVGP-DGRIHTTFRQDVAATGRLSSTDPNLQNIPVRT 656 Query: 728 DLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 + ++IR F+ + L++ADYSQIE+RI+AH++ L + F D+H VA+ F Sbjct: 657 EEARRIRGVFVVGEGHEALMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNFVASRAF 716 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 GV I++V ++RR K +++ + YG+S F LA QL + EA ++ YF RF G+ +Y+ Sbjct: 717 GVPIDQVGAELRRRVKAMSYGLAYGLSAFGLAQQLGVSGEEAKAQMEAYFARFGGVRDYL 776 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 + R+ GY ET+FGRR + ++ S R + ERAA+NAPIQGSAADI + AMI Sbjct: 777 REVVEEARRKGYTETLFGRRRYLPDLTSDNQQQRAVAERAALNAPIQGSAADIIKVAMIH 836 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 V ++L + ++MLLQ+HDELV EV E E + ++ M A I L VP+ V++ Sbjct: 837 VAEALAARNMRSRMLLQVHDELVLEVAEGEQDELAALVAEQMGSA----IELSVPMDVSV 892 Query: 967 KVSNNW 972 NW Sbjct: 893 GFGPNW 898 Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 164/303 (54%), Gaps = 20/303 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P + + G NA+ GF +ML LL++ +H AV F Sbjct: 8 LLLLDGHSLAFRAFYALPEENFQTAAGQTTNAVYGFVSMLINLLRDEDP----THLAVAF 63 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR ++YP+YKANR K PE Q+ L++ A GI +G+EADD+IATY Sbjct: 64 DVSRKTFRAKMYPEYKANRSKSPESFPAQVELIKEVLGALGIVVEAHEGYEADDVIATYA 123 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY------DTVKEEKIDIEHVIKKWGIPPEK 178 A+++G+ V I++ D+D +QLV+P T LY D V+ E V +K+G+ P + Sbjct: 124 TKAQEQGYQVLIMTGDRDALQLVTPDVTVLYPNRGVSDLVRYTP---EQVQEKYGLTPAQ 180 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 AL GD DN+P IPG+G KTAA ++ Y +L+ +L A + K + + E+ + Sbjct: 181 YPDFAALRGDPSDNLPKIPGVGEKTAASWVRAYNSLDELLERADEVPGKT-GQALREHLD 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 R +R+L L D+P+ L L + ++ + LEF L +R+ T Sbjct: 240 QVRQNRQLTELVRDMPLGHSLAELERRQWDRDQVHALFDQLEFRVLRDRLFATLSA---- 295 Query: 299 IEP 301 +EP Sbjct: 296 VEP 298 >gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121] gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121] Length = 887 Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 177/535 (33%), Positives = 296/535 (55%), Gaps = 12/535 (2%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRS 501 +T T E + L + + K H K+ L G ++ G D L +Y++ G+ Sbjct: 355 STATPEDEAALGDWLADASQPKALHEAKWAIHALRGRGWTLGGLTSDTALAAYLVRPGQR 414 Query: 502 SHDIASIAQKWLSYT-RKEILKSRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPK 559 S ++ ++ ++L R E + S+ D D++ E A+ ++ +L L L + Sbjct: 415 SFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAEAAETAMLSAQAVLDLAAALDTE 474 Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 L + + ++ P+ ++Q+E TGI +D L + + + + + Y++ + Sbjct: 475 LESIESKSLLSDMELPLTIELAQIEATGIAVDSAHLHDLQSRFASQVADAANSAYEVIDK 534 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLS 678 + NL SPKQL +LF +L P KTKT + T A+ L+ + + +P ++++L R + Sbjct: 535 QINLGSPKQLQVVLFEELDMPKTKKTKT-GYTTDAEALQGLFDKTGHPFLEHLLAHRDAT 593 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 ++K T D L + + R+HT ++ TGRL+S +PNLQNIP++ D G++IR F+ Sbjct: 594 RMKVT-VDGLLKAVAE-DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRNDAGREIRDGFV 651 Query: 739 -SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797 L++ADYSQIE+RI+AH++ L + F D+H V + FGV IE+V+P++ Sbjct: 652 VGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPEL 711 Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857 RR K +++ + YG+S + LA+QL+I EA + YF RF G+ +Y+ R++G Sbjct: 712 RRRVKAMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDG 771 Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917 Y T++GRR + ++NS R + ERAA+NAPIQG+AADI + AMI+V K+L D L Sbjct: 772 YTSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQKALADAGLK 831 Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++MLLQ+HDELV EV E+ + ++ M A I L VPL V++ +W Sbjct: 832 SRMLLQVHDELVLEVVASELEEVTALVKDKMATA----IELSVPLDVSVGTGRSW 882 Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 106/292 (36%), Positives = 161/292 (55%), Gaps = 16/292 (5%) Query: 8 FLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+DG S +RAFYA P + K H G NA+ GF +ML LL++ + +H A FD Sbjct: 1 MLLDGHSLAFRAFYALPAENFKTHSGQATNAVYGFTSMLINLLRDEQP----THLAAAFD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR +++P+YKA R K P+ Q+ + + A GIP + +GFEADD+IAT T Sbjct: 57 VSRQTFRADLFPEYKAQRAKAPDEFKGQIDITKDVLGALGIPVMAEEGFEADDVIATLTT 116 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVCL 182 AE G+ V +++ D+D +QLV+ T LY V E + V +K+ + P + Sbjct: 117 QAEALGYRVLVVTGDRDSLQLVTDNVTVLYPKKGVSELTRFTPTAVEEKYSLSPSQYPDF 176 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAET 239 AL GD DN+PGIPG+G KTA ++EYG+L+ ++ N +++ K REN+ Sbjct: 177 AALRGDPSDNLPGIPGVGEKTATKWIREYGDLQGLVDNVDKVRGKVGDSLRENL----AN 232 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 L+R+L + DVP+ E L+L + ++ + LEF L +R+ T Sbjct: 233 VLLNRQLTEMVRDVPLPYTPEQLVLAPWDREKIHALFDDLEFKVLRDRLFAT 284 >gi|325001391|ref|ZP_08122503.1| DNA polymerase I [Pseudonocardia sp. P1] Length = 537 Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 175/542 (32%), Positives = 283/542 (52%), Gaps = 25/542 (4%) Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSH 503 LT + + L + + K H++K L G S+ G D L +Y+ G+ + Sbjct: 2 LTPDDEAALGDWLADADVPKAAHDVKAVLHALRSRGWSLAGLTSDTALAAYLARPGQRTF 61 Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN-----SNVILQLWLLLRP 558 D+A +A L Y R+E+ + + + + + ++ I +L L Sbjct: 62 DLADLA---LRYLRRELRTEEPADGQLSLLGGADEADAQAAQQEMLAASAIAELADALDT 118 Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 +L + L+ P+ V++ E GI +D + L + ++ + +N Y + G Sbjct: 119 ELAERGGTELLADLELPLAFVLADCEAAGIAVDSETLSDLESDFGGQVREAAQNAYRVIG 178 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI--NCGDNPIIKNILEWRQ 676 ++ NL SPKQL +LF +L+ P +TKTG + T A L+ + G + ++ +L+ R Sbjct: 179 KEINLGSPKQLQVVLFDELEMPKTKRTKTG-YTTDADALQSLYEQTG-HEFLQFLLQHRD 236 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 +++K T D L + R+HT YS TGRL+S +PNLQN+PI+T G++IR A Sbjct: 237 ATRLKVTV-DGLIKSVAD-DGRIHTTYSQTIAATGRLSSTDPNLQNVPIRTAAGRRIRDA 294 Query: 737 FI------SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790 F+ +L++ADYSQIE+RI+AH+++ L + F + D H AA +FGV Sbjct: 295 FVVGTGPEGGAYAELMTADYSQIEMRIMAHLSEDEALIEAFRSQHDFHAETAARVFGVEA 354 Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850 VS + R K +N+ + YG+S + L+ QLRI EA + YF F G+ +Y+ Sbjct: 355 AGVSVEQRAKIKAMNYGLAYGLSAYGLSGQLRISTDEAKGLMDDYFAGFGGVRDYLAGVV 414 Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910 + R++GY TI GRR + ++ S R + ER A+NAPIQGSAADI + AM+ V ++ Sbjct: 415 DQARKDGYTATILGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLGVRRA 474 Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970 L L ++MLLQ+HDELV EV + E T ++ M A +L VPL+V++ Sbjct: 475 LSAEGLRSRMLLQVHDELVLEVADGERETCEALVRREMAAAA----DLSVPLEVSVGYGR 530 Query: 971 NW 972 +W Sbjct: 531 SW 532 >gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299] gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299] Length = 900 Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 182/519 (35%), Positives = 289/519 (55%), Gaps = 17/519 (3%) Query: 461 HFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519 +F I N KYD ++ + I + F D ++++++LDS S + ++A+ + +T Sbjct: 392 NFKLIVQNFKYDFDIIKFNFDIELNLFADTIILAWLLDSS-SKVGLDALAKNYFDHTMIA 450 Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR---PKLIVEKLLHVYERLDKPM 576 K + S +A E++ + +++ L K E LL + + Sbjct: 451 FKDVVKKGDDFSTVDISNACNYAAEDALMTYKIYFKLLEEFKKQNCEHLLKIANDYEFKF 510 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 IDV+ M+ G++ID +LK + + + + L + I++L+G KFN++SPKQLG ILF Sbjct: 511 IDVLINMQNNGVKIDTQILKNLKIQNQEYIQELTKKIHELAGTKFNINSPKQLGVILFEN 570 Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI-NKR 695 L + K KTG + T L ++ + II IL++R+ K++STY + L N Sbjct: 571 LGLTASKKGKTG-YSTNEVVLNKL-VDSHEIIPVILDYREAYKLQSTYIEPLLELASNDS 628 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 +++T + T TGRL+S PNLQNIP+K+ G++IR+AFI+ KL+ DYSQIEL Sbjct: 629 ENKIYTSFLQTGTATGRLSSKNPNLQNIPVKSSAGREIRKAFIARDGYKLVGIDYSQIEL 688 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 R+LAH +K L F + LDIH A +IFG E+ + Q R AKTINF ++YG+ Sbjct: 689 RLLAHFSKDKALVDAFNSDLDIHSQTAVKIFG---EEKASQKRNIAKTINFGLLYGMGSK 745 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 +LA L+I EA YI YF F + EY++ ++F +NGYVET+ RR +D N+ Sbjct: 746 KLADTLKITPKEAKVYIDSYFEAFTNVKEYMKSIEDFALENGYVETLIKRRRIFD-FNAA 804 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + R R A+N QGSAAD+ + +MI + + ++++ KM+LQIHDEL+FEV E Sbjct: 805 NTMQRIGYLREAVNTKFQGSAADLIKLSMIKIFEKYKNNE-DLKMILQIHDELIFEVKNE 863 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + I + ++K L +PLKV++ V N+W + Sbjct: 864 K----QDEITNDLKKIMENIFTLEIPLKVSVAVGNSWGD 898 Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 103/288 (35%), Positives = 155/288 (53%), Gaps = 19/288 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D F++R+FYA P L K DG P + GF N + N K+ + D Sbjct: 14 VIDTFGFLFRSFYALPPLKSK-DGFPTGLLTGFMN----FISNIGKDFQTDYIVFALDSK 68 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 TFRN IY YK++RP +PE LL QLP+ + G GFEADD+IA+ + A Sbjct: 69 GDTFRNAIYDQYKSHRPDVPEDLLKQLPVAISWIEEMGFKTAIKSGFEADDLIASIAHDA 128 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTC-LYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 ++ V I+S DKDL QL+ T L+D +K+ I+ E +K+G+ P + Q+L G Sbjct: 129 RQKDLEVRIVSHDKDLYQLIDDDTVYLFDPIKKIIINEEKCYEKYGVHPNQFTDYQSLLG 188 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLV 247 DS DN+PG+ G+G KTA L++E+G LENI N + + + + +LE E A +S++LV Sbjct: 189 DSADNVPGVKGVGAKTAEALIKEFGTLENIYENIESVSKPRWKTLLLENKEMAFISKELV 248 Query: 248 MLRTDV-------PITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 L+ D +P E+ IL ++ L + TK++ RV Sbjct: 249 TLKKDCHCIDFLDQFELPKENPIL------KIQDTLAKYDLTKIVERV 290 >gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4] gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4] Length = 912 Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 169/529 (31%), Positives = 294/529 (55%), Gaps = 14/529 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK 511 L + + KIGH++K + G + G D L +Y+ G+ + + +A + Sbjct: 388 LSAWLADPEIRKIGHDLKVPLHAVRARGWTFGGLNMDTALAAYLARPGQRTFGLDDLALR 447 Query: 512 WLSYT-RKEILKSRKSSIPIDKISDSQVQEH---AIENSNVILQLWLLLRPKLIVEKLLH 567 +L R E +D +D Q+ + + I +L L +L Sbjct: 448 YLHRELRSEAGDGDGQLSLLDGGADELEQKEISAELVKARAIFELAGALAAELEELGGAK 507 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + L+ P+++V++++E GI +D D L ++ A + E+ Y++ G++ NL SPK Sbjct: 508 LLAELELPLLEVITELEAAGIAVDTDQLTELEAHYLSRVTQAAESAYEVIGKQINLGSPK 567 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYAD 686 QL +LF +L P +TKTG + T A L+ + ++P ++++LE R +++++T Sbjct: 568 QLQVVLFDELGMPKTKRTKTG-YTTDADALQSLFEKTEHPFLQHLLEHRDATRLRTTVEG 626 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKL 745 + + + R+HT TGRL+S+EPNLQNIP++T+ G++IR AF+ +L Sbjct: 627 LIKSVADD--GRIHTTLQQTIAATGRLSSIEPNLQNIPVRTEEGRRIRDAFVVGDGYAEL 684 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 ++ADYSQIE+RI+AH++K L + F + D+H VA+ F V +++P+ R K ++ Sbjct: 685 MTADYSQIEMRIMAHLSKDEGLIEAFNSGEDLHTFVASRAFSVPAAEITPEQRYRVKAMS 744 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 + + YG+S + L+ QL+I +A + ++ YF RF G+ +Y++ + GY ETIFGR Sbjct: 745 YGLAYGLSAYGLSQQLKISTEDAKEQMEAYFSRFGGVRDYLQSVVGEAAKCGYTETIFGR 804 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + ++NS R + ER A+NAPIQGSAADI + AM++VH++L + +++LLQ+H Sbjct: 805 RRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVHRALAEAGARSRVLLQVH 864 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DELV E+ + E + +++ M A L VPL+V++ +W E Sbjct: 865 DELVLEIADGERSDVEKLVREGMGSAA----ELAVPLEVSVGYGRSWNE 909 Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 106/293 (36%), Positives = 158/293 (53%), Gaps = 17/293 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + R G NA+ GF +ML LL++ + +H AV F Sbjct: 24 LLLIDGHSMAYRAFFALPAENFRTKTGQVTNAVFGFTSMLINLLRDEKP----THLAVAF 79 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+E Y DYKANR P+ Q+ LV+ GIP++ + +EADD+IAT T Sbjct: 80 DLSRKTFRSETYADYKANRSTTPDEFRGQVDLVKEVLDVLGIPSLTKENYEADDVIATLT 139 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 A E + V I + D+D +QLV+ P + D V + E V +K+G+ P + Sbjct: 140 TQA-GEDYDVLICTGDRDALQLVTDRVTVLYPKRGVSDLV---RFTPEAVEEKYGLTPTQ 195 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 AL GD DN+PGIPG+G KTAA ++++G+L +++ +K K + + E+ Sbjct: 196 YPDFAALRGDPSDNLPGIPGVGEKTAAKWIRQFGSLADLIDRVDEVKGKV-GDALREHLS 254 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 + +L+R+L L DVP+ + L L N + LEF L +R+ T Sbjct: 255 SVQLNRQLTELVRDVPLESVPDQLELRPWNREAVHRLFDELEFRVLRDRLFET 307 >gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021] gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21] Length = 314 Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 145/306 (47%), Positives = 202/306 (66%), Gaps = 5/306 (1%) Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728 K ++E R LSK+KSTY D LP +N +T RVHT Y A T TGRL+S +PNLQNIPI+ + Sbjct: 12 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNE 71 Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 G++IR+AFI+ +++ADYSQIELRI+AH++ L F DIHR AAEIFGV Sbjct: 72 EGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGV 131 Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848 ++++V+ + RR+AK INF +IYG+S F L+ QL I R +A Y+ YF R+P + +++ Sbjct: 132 SLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTD 191 Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908 + + GYVET+FGRR++ +INS + R ER AINAP+QG+AADI +RAMI + Sbjct: 192 IRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKID 251 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 + + H +M++Q+HDELVFEV E++ + I ME A L VPL V + V Sbjct: 252 EVIR-HDPDIEMIMQVHDELVFEVRSEKVAFFREQIKQHMEAAA----ELVVPLIVEVGV 306 Query: 969 SNNWQE 974 NW E Sbjct: 307 GKNWDE 312 >gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Corynebacterium glutamicum ATCC 13032] Length = 905 Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 171/500 (34%), Positives = 276/500 (55%), Gaps = 19/500 (3%) Query: 481 ISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534 ++ RGFE D + +Y+L G+ ++++A + Q+ L R+ + + + Sbjct: 412 LAGRGFELHGVVHDTAIAAYLLRPGQRTYELADVYQRHLQ--RQLSTNDNGGQLTLLDAA 469 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID-QD 593 D Q +++ IL+L L +L + +Y L+ P+ ++++ME GI +D Sbjct: 470 DDQ---SLVDDVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVAT 526 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L +Q+ I + E NLSSPKQL +LF P KTKTG Sbjct: 527 LEEQLKTFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAA 586 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 A+ +P + ++L RQ K+K+T + L + R+HT ++ TGRL Sbjct: 587 AEIEALAIKNPHPFLDHLLAHRQYQKMKTTL-EGLIREVAP-DGRIHTTFNQTVASTGRL 644 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 +S +PNLQNIP++T+ G+KIR F+ + L++ADYSQIE+R++AH+++ L + + Sbjct: 645 SSTDPNLQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYR 704 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 D+H V +++F V I+ V+P++RR K +++ ++YG+S F L+ QL IP EA + Sbjct: 705 EGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLSAFGLSQQLSIPAGEAKQIM 764 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 + YF RF G+ Y+ + R+ GY ET+FGRR + E+ S R ERAA+NAPI Sbjct: 765 ESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRYLPELTSDNRVARENAERAALNAPI 824 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI + AMI V +SL++ + +++LLQ+HDELV EV E+ +I+ M+ A Sbjct: 825 QGTAADIIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNA- 883 Query: 953 LPKINLRVPLKVNIKVSNNW 972 I L VPL+V+ NW Sbjct: 884 ---IKLSVPLEVSAGDGVNW 900 Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 150/288 (52%), Gaps = 11/288 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAF+A P + G NA+ GF +ML LL++ + +H AV F Sbjct: 25 LMLIDGHSMAFRAFFALPAENFSTSGGQATNAVYGFLSMLSTLLKDEQP----THVAVAF 80 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR +++P YKA R P Q+ +++ GI IE FEADD+IAT + Sbjct: 81 DVGRKTFRTDMFPAYKAQREATPPEFKGQVEILKEVLSTLGITTIEKIDFEADDVIATLS 140 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 A+ GF I++ D+D QLV+ TT + +K + E V +K+G+ P + Sbjct: 141 VAAKPLGFKTLIVTGDRDSFQLVNDTTTVLYPMKGVSVLHRFTPEAVEEKYGLTPRQYPE 200 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+P IPG+G KTA + +Y L+N+L +A IK K ++ E E R Sbjct: 201 FAALRGDPSDNLPNIPGVGEKTATKWIAQYETLDNLLDHADEIK-GKVGASLRERIEQVR 259 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRV 288 ++RKL + D+ + + + ++ + + LEF T L RV Sbjct: 260 MNRKLTEMVKDLELPLGPDDFEMKPVQVAEVAAKFDDLEFGTNLRERV 307 >gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92] gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92] Length = 879 Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 189/526 (35%), Positives = 293/526 (55%), Gaps = 45/526 (8%) Query: 465 IGHNIKYD-KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KE 519 +G N+KYD K+V G+ F+D M+++++ D ++ + ++A++ +Y ++ Sbjct: 381 VGQNLKYDFKVVKRNLGLEPPVKFKDTMVLAWLADPSQAV-GMDALAKRLYNYDTIKFED 439 Query: 520 ILKSRK--SSIPIDKISDSQVQEHAIENSNVILQLWL----LLRPKLIVEKLLHVYERLD 573 +++ + +S+P++ + ++A E++ + L+ + LL P LI +L + +E Sbjct: 440 VVRRGETFASVPLENAA-----KYAAEDAWITLKFYKSFLNLLDPALI--ELANAHEF-- 490 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 P I + ME GI I++ ++ + + + L IY+L+GE FN++S KQLG +L Sbjct: 491 -PFILTLFDMESVGIAINKKKMQNLILQNDAKIKILTSEIYELTGENFNINSVKQLGAVL 549 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 F LK P KTKTG A E I+ + +I +LE+R+L K++STY + L N N Sbjct: 550 FEHLKLPVKKKTKTGYSTDEAVLAELIDA--HLVIAKLLEYRELYKLQSTYCEPLLNLAN 607 Query: 694 K-RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQ 752 K R++T + T TGRLAS PNLQNIP + L + +R F + + DYSQ Sbjct: 608 KDENSRIYTNFVQTGTSTGRLASKNPNLQNIPARGSLAKDVRETFEAKEGYSFVGLDYSQ 667 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELR+LAH ++ L + FEN DIH A IFG Q R AK+INF +IYG+ Sbjct: 668 IELRLLAHFSRDEALLKAFENDEDIHARTAISIFG----SADGQNRAVAKSINFGLIYGM 723 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 +LA Q+ I R+EA +YI+RYF FP I ++E K + G+V T+ GR+ +D Sbjct: 724 GSSKLAGQVNISRAEAKEYIERYFKAFPTIKGFLEGIKTAAKNEGFVRTLLGRKRFFDFT 783 Query: 873 NS-PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 N+ P + + ER A+N QGSAADI + AM+ + + KMLLQIHDEL+FE Sbjct: 784 NATPMQTA--MYEREAVNTIFQGSAADIIKLAMVKIRPLC---SVRAKMLLQIHDELIFE 838 Query: 932 VPEE---EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 V +E E A+Q I+ + K L VPLK ++ V+ NW E Sbjct: 839 VADEHAAEFGEAAQKIMQEIYK-------LNVPLKTSLNVAKNWGE 877 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/249 (35%), Positives = 137/249 (55%), Gaps = 6/249 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R +YA P L + DG P I+GF N + L + E + + + Sbjct: 4 LTIIDTFGFFFRLYYAMPNL-KNRDGKPSGMISGFANFILNL----KNEFPSDYIIFALE 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 T R++I DYKANR + P L QLP+ + G+ AI +G+EADDIIAT Sbjct: 59 GKGETLRHKIAGDYKANRSEAPAALKEQLPVCIEMIEKMGLCAISREGYEADDIIATAVR 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 +A+ + V +++ DKDL QL+ +Y + + + D ++K+G+ PE++ A+ Sbjct: 119 LAKSQDVFVRVVTHDKDLYQLIEDGKVSIYSPLSKIEHDTASCVEKYGVRPEQIRDFLAI 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ GIG A LL E+G+LE I N + ++ ++ RE + E+A LS++ Sbjct: 179 AGDSSDNIPGVKGIGAVGAKKLLAEFGSLEAIYENLALVRNERTREMLAAGRESAFLSKR 238 Query: 246 LVMLRTDVP 254 L L D P Sbjct: 239 LTTLFDDAP 247 >gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] Length = 895 Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 156/412 (37%), Positives = 238/412 (57%), Gaps = 9/412 (2%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 E+ V + ++ P++ V+++ME+ G+ ID L ++ ++ L Y G + N Sbjct: 486 ERTRAVLDEIELPLVAVLAEMELNGVAIDAVALTRLRDRLTGKASDLAARAYAEIGHEIN 545 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIK 681 L SPKQL +LF +L P TKTG + T A L + +P + +L+ R +K+K Sbjct: 546 LGSPKQLQQVLFEELGMPKTRSTKTG-YSTDAASLADLQEKSPHPFLGLLLQHRDATKLK 604 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 ++L + R+HT Y T TGR++S +PNLQNIPI+T+ G++IR +F+S Sbjct: 605 QI-VETLERSVTG-DGRIHTTYDQTGTSTGRISSNDPNLQNIPIRTEEGREIRSSFVSGG 662 Query: 742 TKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 + L++ADYSQIE+RI+AH++ L + F D+HR V + +FGV E+V+P MR Sbjct: 663 EDETLLTADYSQIEMRIMAHLSDDPGLIEAFNAGEDLHRFVGSRVFGVPPEEVTPLMRTK 722 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 K +++ + YG+S F L+ QLRI SEA + + YF RF + +Y+ R +G+ E Sbjct: 723 VKAMSYGLAYGLSAFGLSKQLRIETSEARELMNGYFERFGAVRDYLRNVVEQARLDGFTE 782 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 TIFGRR + ++ S +R ER A+NAPIQGSAADI + AM+ + + D +L ++M Sbjct: 783 TIFGRRRPFADLTSTNRVLRENAERQALNAPIQGSAADIMKIAMLGIAGDMSDQRLGSRM 842 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LLQ+HDEL+FEV E I+ M A +LRVPL V I + W Sbjct: 843 LLQVHDELIFEVAPGEGDALETIVRARMVGAA----DLRVPLDVQIGRGSTW 890 Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/296 (34%), Positives = 152/296 (51%), Gaps = 11/296 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ S +G NAI GF ML LLQ + +H AV F Sbjct: 9 LLVIDGHSLAFRAFYALPVDSFVNREGQHTNAIHGFIAMLINLLQQQKP----THLAVAF 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR YP+YK R + P Q+PL+ A A I I + +EADDI+AT Sbjct: 65 DVSRASFRTREYPEYKGTRGETPPEFAGQVPLLEEALHAMNIQTIAKEDYEADDILATLA 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVK---EEKI-DIEHVIKKWGIPPEKMV 180 +EG+ V ++S D+D +QLV+ T LY V+ E K+ D V +++GI P + Sbjct: 125 RRGVEEGYRVLLVSGDRDTIQLVTDEVTLLYPNVRGVSELKVYDPAAVRERYGIEPHQYP 184 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 + AL G++ DN+ GI +G KTA +Q YG + NI+ +A I +N+ + E A Sbjct: 185 EIAALVGETSDNLIGIDKVGEKTAVKWVQRYGTVANIVAHAGEITGVV-GQNLRDQQENA 243 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 +R+L L DV + + L + + L+F L++R+ T D Sbjct: 244 LRNRRLNKLLDDVELPVGPSDLARRPLDENAVRDIFARLQFKTLLDRLLKTAAEDG 299 >gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032] gi|62390237|ref|YP_225639.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032] gi|41325574|emb|CAF21363.1| DNA POLYMERASE I [Corynebacterium glutamicum ATCC 13032] Length = 880 Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 171/500 (34%), Positives = 276/500 (55%), Gaps = 19/500 (3%) Query: 481 ISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534 ++ RGFE D + +Y+L G+ ++++A + Q+ L R+ + + + Sbjct: 387 LAGRGFELHGVVHDTAIAAYLLRPGQRTYELADVYQRHLQ--RQLSTNDNGGQLTLLDAA 444 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID-QD 593 D Q +++ IL+L L +L + +Y L+ P+ ++++ME GI +D Sbjct: 445 DDQ---SLVDDVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVAT 501 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTT 653 L +Q+ I + E NLSSPKQL +LF P KTKTG Sbjct: 502 LEEQLKTFIGQVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAA 561 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 A+ +P + ++L RQ K+K+T + L + R+HT ++ TGRL Sbjct: 562 AEIEALAIKNPHPFLDHLLAHRQYQKMKTTL-EGLIREVAP-DGRIHTTFNQTVASTGRL 619 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 +S +PNLQNIP++T+ G+KIR F+ + L++ADYSQIE+R++AH+++ L + + Sbjct: 620 SSTDPNLQNIPVRTEAGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYR 679 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 D+H V +++F V I+ V+P++RR K +++ ++YG+S F L+ QL IP EA + Sbjct: 680 EGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLSAFGLSQQLSIPAGEAKQIM 739 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 + YF RF G+ Y+ + R+ GY ET+FGRR + E+ S R ERAA+NAPI Sbjct: 740 ESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRYLPELTSDNRVARENAERAALNAPI 799 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QG+AADI + AMI V +SL++ + +++LLQ+HDELV EV E+ +I+ M+ A Sbjct: 800 QGTAADIIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELEQVREILEREMDNA- 858 Query: 953 LPKINLRVPLKVNIKVSNNW 972 I L VPL+V+ NW Sbjct: 859 ---IKLSVPLEVSAGDGVNW 875 Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 98/287 (34%), Positives = 149/287 (51%), Gaps = 11/287 (3%) Query: 8 FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+DG S +RAF+A P + G NA+ GF +ML LL++ + +H AV FD Sbjct: 1 MLIDGHSMAFRAFFALPAENFSTSGGQATNAVYGFLSMLSTLLKDEQP----THVAVAFD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR +++P YKA R P Q+ +++ GI IE FEADD+IAT + Sbjct: 57 VGRKTFRTDMFPAYKAQREATPPEFKGQVEILKEVLSTLGITTIEKIDFEADDVIATLSV 116 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 A+ GF I++ D+D QLV+ TT + +K + E V +K+G+ P + Sbjct: 117 AAKPLGFKTLIVTGDRDSFQLVNDTTTVLYPMKGVSVLHRFTPEAVEEKYGLTPRQYPEF 176 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD DN+P IPG+G KTA + +Y L+N+L +A IK K ++ E E R+ Sbjct: 177 AALRGDPSDNLPNIPGVGEKTATKWIAQYETLDNLLDHADEIK-GKVGASLRERIEQVRM 235 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRV 288 +RKL + D+ + + + ++ + + LEF T L RV Sbjct: 236 NRKLTEMVKDLELPLGPDDFEMKPVQVAEVAAKFDDLEFGTNLRERV 282 >gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] Length = 912 Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 176/534 (32%), Positives = 293/534 (54%), Gaps = 23/534 (4%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 L + + K+ H +K L + G + G D L +Y+ G+ S D+A +A + Sbjct: 387 LADWLADPDAQKVVHEVKGPLLAVWARGWDLAGVVSDTALAAYLALPGQRSFDLADLAVR 446 Query: 512 WLSYTRKEILKS--RKSSIPIDKISDSQVQEHAIENSNV-ILQLWLLLRPKLIVEKLLH- 567 +L R+E+ S ++ + +D + S+ ++ A E ++ +L+ + ++ LL Sbjct: 447 YL---RRELKDSAAEETQLTLDGMGPSE-EDLAREAAHADVLKAVAVNDLSDALDSLLGQ 502 Query: 568 -----VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 + ++ P+ V+++ME GI D D L ++ E + + + Y + G + N Sbjct: 503 RGGDALLGGIELPLTFVLARMEQRGIAADLDFLHELQREFADGVAAAAAEAYAVIGREVN 562 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIK 681 L SPKQL +LF +L P K K+G + T A+ L + +P ++++L R +++++ Sbjct: 563 LGSPKQLQAVLFDELGLPKTKKIKSG-YTTDAEALTNLLAQTGHPFLEHLLRHRDVTRLR 621 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SP 740 + +P + R+HT + TGRL+S++PNLQNIPI+T G++IR+AF+ Sbjct: 622 TVIDGLIP--MVDDGGRIHTTFQQTIAATGRLSSIDPNLQNIPIRTAEGRRIRQAFVVGS 679 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 + L++ADYSQIE+RI+AH++ L + F + D+H VA+ + + IE V P+MRR Sbjct: 680 GHESLMTADYSQIEMRIMAHLSGDAGLIEAFTSGEDLHSFVASRAYDIPIEDVDPEMRRR 739 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 K +++ + YG+S + LA QLRI EA + + YF RF GI EY++ + RQ GY E Sbjct: 740 IKAMSYGLAYGLSAYGLAGQLRISVEEAREQMHAYFERFGGIREYLDGVVDDARQTGYTE 799 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 T GRR + ++ S R + ER A+NAPIQGSAAD+ + AM+ V +++ D L ++M Sbjct: 800 TTLGRRRYLPDLTSDNGQRRQMAERMALNAPIQGSAADVIKVAMLRVEQAIADEGLRSRM 859 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LLQ+HDELV EV E ++ M A L VPL+V++ W E Sbjct: 860 LLQVHDELVLEVAPGEREALETLVRREMAGAA----QLSVPLEVSVGFGRTWDE 909 Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 155/290 (53%), Gaps = 10/290 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P+ + G P NA+ GF +ML +L++ + +H AV F Sbjct: 22 LLLLDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQP----THVAVAF 77 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNEIY +YKANR + P Q+ L++ A +P I +G+EADD+IAT T Sbjct: 78 DVGRKTFRNEIYAEYKANRSESPTDFRGQVSLIQEVLAALHVPVITAEGYEADDVIATLT 137 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A ++G V I + D+D +QLV+ T LY + E V K+G+ P + Sbjct: 138 VAAVEQGMDVLICTGDRDALQLVNEHVTVLYPRKGVSDLTRFTPEEVEAKYGLSPAQYPD 197 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+P IP +G KTAA ++EYG+L+ ++ +K K E + E+ + Sbjct: 198 FAALRGDPSDNLPSIPSVGEKTAAKWVREYGSLDALVDQVDTVKGKV-GEKLREHLSSVL 256 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 +R+L L VP+ + L + + + + L+F L +R+ T Sbjct: 257 QNRRLTELDRAVPLELGPADLAVRAWDRNEVHTLFDNLQFRVLRDRLFAT 306 >gi|261366357|ref|ZP_05979240.1| DNA polymerase I [Subdoligranulum variabile DSM 15176] gi|282571960|gb|EFB77495.1| DNA polymerase I [Subdoligranulum variabile DSM 15176] Length = 837 Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 157/407 (38%), Positives = 237/407 (58%), Gaps = 7/407 (1%) Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ ++ P+ V++ ME G +D D ++ + L + ++IY+ G +FN++SPK Sbjct: 436 LHDEMELPLARVLADMERIGFAVDADGIRAFGDSLRGELDGILQSIYEEVGYEFNVNSPK 495 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG+ LF KL P KT G + T A LE + +P+I IL++R +K+ STY + Sbjct: 496 QLGEALFDKLGLPPRKKTSRG-YSTDAATLESLRP-YSPVIDQILKYRTYAKLLSTYVEG 553 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLIS 747 L + RVH+ + TGR++S EPNLQNIPI+T+LG ++R F++ K+L+ Sbjct: 554 LLS-AQAADGRVHSTFIQTEARTGRISSTEPNLQNIPIRTELGSRLRGFFVAGAGKELVD 612 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIELRILAHI + Q F + DIHR AA+I+ + +V+PQ+R +K INF Sbjct: 613 ADYSQIELRILAHITGDEAMQQAFLHGADIHRSTAAKIYHIPESEVTPQLRSASKAINFG 672 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 I+YG F L+ L + EA ++K Y FP + Y++ ++ GYVET+FGRR Sbjct: 673 IMYGKGAFSLSKDLDVSVKEADAFLKTYLATFPKVDGYMQDCIAHAKEKGYVETLFGRRR 732 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 E+ S +R ER A N PIQG+AADI + AM+ V + L D KL ++LLQ+HDE Sbjct: 733 ALPELASSNFQVRASGERMARNTPIQGTAADIIKLAMVHVWQRLRDEKLEARLLLQVHDE 792 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+ E PE E+ +++ ME+ + VPL ++ W E Sbjct: 793 LIVEAPEAEVEEVKRVLREEMEQV----VQYSVPLTTDVGTGKTWLE 835 Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 157/285 (55%), Gaps = 10/285 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++DG+S + RAF+ LL+ K DG NAI GF N+L LL + +++A + +D Sbjct: 3 LMVLDGNSLVNRAFFGIKLLTTK-DGRYTNAIFGFQNILLNLLSAHQPDAVA----IAWD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A TFR++ Y YKA R +PE L Q+P+++ + G + +G+EADDI+ T Sbjct: 58 ERAPTFRHKAYDGYKATRHGMPEELAQQMPVLKELLKDLGFVQVSKEGWEADDILGTLAA 117 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCLQA 184 E +G + + D+D +QLV TT L T KE +D + +K+G+ P +++ +++ Sbjct: 118 ACEAQGGTTLLATGDRDSLQLVDDATTVLLATNKETIPMDPAAIQEKYGVTPAQLIDVKS 177 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKRRENILEYAETARL 242 L GDS DNIPG+PGIG KTA L+Q++G+L++I + IK +R + + + A L Sbjct: 178 LMGDSSDNIPGVPGIGEKTALALVQKFGSLQSIYDHLEDPAIKPGQRTK-LGANRDKAEL 236 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 S L +R D PI + L LE KLI+R Sbjct: 237 SYMLGTIRKDAPIDTDPAAYTRRPGDPTAAAHLLAGLEMHKLIDR 281 >gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] Length = 879 Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 157/414 (37%), Positives = 240/414 (57%), Gaps = 9/414 (2%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 E++ V + ++ P + ++ ME+ G+ + L SAE+ +L + Y G + N Sbjct: 470 ERVAEVLDDIEMPTLTALADMELAGVAVSHAKLSGFSAELGARADALARDAYAAIGHEVN 529 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN-CGDNPIIKNILEWRQLSKIK 681 L SPKQL ++LF +L+ P KTK+G + T A L + +P + +L+ R+ +K+K Sbjct: 530 LGSPKQLQEVLFDELQLPKTRKTKSG-YTTDAAALADLQESAPHPFLDLLLKHREATKLK 588 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISP 740 D+L + R+HT Y + TGRL+S +PNLQNIPI+T+ ++IR AF + Sbjct: 589 QII-DAL-DTATGPDGRIHTTYVQTGSQTGRLSSTDPNLQNIPIRTEESRRIRAAFEVGE 646 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 + L++ADYSQIE+RI+AH++ L + F + D+HR V A +FGV +V+P MR Sbjct: 647 GYETLLTADYSQIEMRIMAHLSGDPGLIEAFNSGEDLHRFVGARVFGVEPAEVTPAMRTK 706 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 K +++ ++YG+S F L+ QLRI +SEA + YF RF + +Y+ + RQ+GY E Sbjct: 707 VKAMSYGLVYGLSAFGLSKQLRIEQSEAKKLMLEYFARFGAVRDYLRGSVEQARQDGYTE 766 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 TIFGRR + ++ S +R ERAA+NAPIQGSAADI + A+ + + L L +++ Sbjct: 767 TIFGRRRPFPDLTSMNRVLRENAERAALNAPIQGSAADIMKVALFRIREELASAGLRSRV 826 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LLQIHDELV E+ E +I+ M A L VPL V I +W E Sbjct: 827 LLQIHDELVVEIAPGEWDAVERIVRARMADAA----ELSVPLDVQIGRGGDWDE 876 Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 164/299 (54%), Gaps = 13/299 (4%) Query: 7 LFLVDGSSFIYRAFYATPL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L +VDG S YRAFYA P+ S K DG N I GF +M L++ + +H AV Sbjct: 9 LLVVDGHSLAYRAFYALPVDNFSTK-DGQHTNGIYGFLSMFVNLVKAEKP----THLAVA 63 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD +FR Y +YKANR + P Q+PL++ +A G+P ++ + FEADDI+AT Sbjct: 64 FDTSRQSFRTREYAEYKANRSESPAEFKGQIPLLQECLEAMGVPVLKKEDFEADDILATL 123 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 E +GF V + S D+D +QLV+ T LY V+ ++ D VI+K+G+PPE+ Sbjct: 124 ATQGEAQGFQVLVCSGDRDTIQLVTDDITLLYPNVQGVSQLKRYDTAAVIEKYGLPPEQY 183 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL G++ DN+PG+P +G KTA L ++G+L+ +L NA ++ N+ E+ + Sbjct: 184 PDIAALVGETSDNLPGVPKVGEKTAVKWLTQWGSLDALLENADKVTGVV-GNNLREHLDG 242 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 R +R L L DV + + L ++ +G + LEF L+ RV DA + Sbjct: 243 VRRNRALNRLLRDVELPVGPSDLQMKPLDGQAVRDIFARLEFRTLLPRVFDALGGDAGD 301 >gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074] Length = 897 Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 172/513 (33%), Positives = 278/513 (54%), Gaps = 13/513 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 KI HN K V +G + G D L +Y++ GR S + +++ L Y +E+ Sbjct: 391 KILHNAKGVMRVFAEHGWRVEGVTMDTALAAYLVKPGRRSFALDALS---LEYLGRELAP 447 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + +D + + HA+ + +L L +L + ++ P +++ Sbjct: 448 ATADG-QLTLGADDEAEAHALMVQARTVLDLGAAFGERLEQVGATGLLADVELPTSILLA 506 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +E GI D+D L+ + + + + + +D G +FNL SPKQL ++LF +L P Sbjct: 507 SLERAGIAADRDHLEAMERQFAAAVQQAVKEAHDAVGREFNLGSPKQLQEVLFGELNLPK 566 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG D+ + +L R+ +K++ T + L I R+HT Sbjct: 567 TKKTKTGYTTDADALAWLAAQTDHELPVIMLRHREQAKLRVTV-EGLIKSIAT-DGRIHT 624 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 ++ TGRL+S EPNLQNIP++TD G+ IRR F+ + L++ADYSQIELR++AH Sbjct: 625 TFNQTVAATGRLSSTEPNLQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAH 684 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ L + F + D+H VA+++FGV + V +MRR K +++ + YG+S F L+ Q Sbjct: 685 LSQDEGLIEAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 744 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I EA + YF RF G+ +Y+ + R GY ET+ GRR + ++NS R Sbjct: 745 LNIDAGEARALMDTYFERFGGVRDYLRHAVDEARATGYTETMLGRRRYLPDLNSDNRQRR 804 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQG+AADI + AM+ VH++L + +L+++MLLQ+HDE+V E+ E Sbjct: 805 ETAERMALNAPIQGTAADIVKIAMLRVHRALTEARLSSRMLLQVHDEIVLEIAPGERERV 864 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +I+ M A + LR PL V++ V NW+ Sbjct: 865 EEIVRREMADA----VQLRAPLDVSVGVGQNWE 893 Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 100/254 (39%), Positives = 143/254 (56%), Gaps = 10/254 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NAI GF +ML N+ ++ +HFAV F Sbjct: 12 LMLMDGHSLAYRAFFALPAENFTTVTGQPTNAIYGFASML----ANTLRDEQPTHFAVAF 67 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R+E + +YKANR K P+ Q+ L+ A P + GFEADD+IAT Sbjct: 68 DVSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAPRFAVDGFEADDVIATLA 127 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE GF V I++ D+D QL+S TT LY T V E + E V +K+G+ P + Sbjct: 128 TQAEAAGFEVLIVTGDRDSFQLISDHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPD 187 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ A +K K +N ++ E + Sbjct: 188 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERAEEVKGKA-GQNFRDHLEAVK 246 Query: 242 LSRKLVMLRTDVPI 255 L+R+L + DV + Sbjct: 247 LNRRLTEMIRDVEL 260 >gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str. F0310] gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str. F0310] Length = 896 Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 178/527 (33%), Positives = 274/527 (51%), Gaps = 39/527 (7%) Query: 473 KLVLH-----RYGISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEIL 521 +LV+H R+ ++ RG+ D ML +Y+ + SH + + + L E+ Sbjct: 379 RLVVHDAKGVRHALASRGWTLGEVAFDTMLAAYLAHPDQRSHKLTDVVARILGI---EVS 435 Query: 522 KSRKSSIPIDKISDSQVQEHA-IENSNVILQLWLL---LRPKLIVEKLLHVYERLDKPMI 577 ++ D + A + + QL L LR L K L + ++ P+ Sbjct: 436 EAADEGALFDMDESEEGPTGAEMRAGRIAAQLIPLAERLRRTLEESKELGLLSDMEMPLA 495 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 ++ ME TGI +D +L +SAE+ ++ ++ +G + NLSSPKQL ++LF Sbjct: 496 RLLGDMEATGIGVDTGVLSDLSAELGADVEKARRGAWEAAGREVNLSSPKQLQELLFDHF 555 Query: 638 KFPS----------GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 P A+ W T E + + +L R K+K DS Sbjct: 556 ALPKTKKTKTGYTTNAEALADLWAKT----EASGGAGHRFLGYLLAHRDRIKLKQMV-DS 610 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + +R+HT +S + TGRLAS +PNLQNIP ++ G +IR AF P L+ Sbjct: 611 LIATVGA-DERIHTTFSQVAAATGRLASSDPNLQNIPARSPDGMRIRGAFTPGPGYASLM 669 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 SADYSQIE+R++AH++ L + F + D+HR +A+ +FG +E+VS + R K ++ Sbjct: 670 SADYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVEQVSGEERSRIKATSY 729 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 + YG+S + LA QL I EAA RYF RF + +Y+E R +GY ET+FGRR Sbjct: 730 GLAYGLSSYGLAAQLGIAVPEAAALRDRYFERFGKVRDYLEGLVAQARADGYTETMFGRR 789 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + ++ S R + ERAA+NAPIQGSAADI + AM++V +L + LAT++L+QIHD Sbjct: 790 RYLPDLRSSNRQRREMAERAALNAPIQGSAADIVKIAMMNVASALANEGLATRLLVQIHD 849 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 EL+ E+ E A +++ ME A + L VPL V + V +WQ Sbjct: 850 ELLLEIAPGEADVAEKLVRERMEGA----VALSVPLDVAVGVGASWQ 892 Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 156/304 (51%), Gaps = 18/304 (5%) Query: 7 LFLVDGSSFIYRAFYATP-----LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + ++DG S +RAFYA P + +H NA+ GF +ML +LL+ + +H Sbjct: 1 MLIIDGHSMAFRAFYALPPENFVTATGQH----TNAVYGFVSMLARLLETEKP----THV 52 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 AV FD +FR E YP+YK R PE Q+ L+R A GI A+ +GFEADDI+ Sbjct: 53 AVAFDVSRHSFRTEEYPEYKGTRDATPEEFKGQVELIREVLDAMGIVALSREGFEADDIL 112 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE---EKIDIEHVIKKWGIPPE 177 AT Y A EG +V ++S D+D Q V+ T LY ++ E + K+G+PP Sbjct: 113 ATLAYQAGHEGASVLVVSGDRDTFQTVTQNVTVLYPGTGPGDLRRMTPEAIEAKYGVPPH 172 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 + + A+ G++ DN+PG+PG+G KTAA + + L+N+L A I KR + E+ Sbjct: 173 RYPEIAAIVGETSDNLPGVPGVGPKTAAQWINRFDGLDNLLERAHEIG-GKRGAALREHT 231 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + +R+L L TD+ + + L+ + + ALEF +L +V Sbjct: 232 DDVVRNRRLNRLVTDMDLGLTRADLVRRATDVAAVDRLFDALEFGRLRAKVREVSGVGMG 291 Query: 298 NIEP 301 EP Sbjct: 292 QGEP 295 >gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074] gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074] Length = 908 Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 172/513 (33%), Positives = 278/513 (54%), Gaps = 13/513 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 KI HN K V +G + G D L +Y++ GR S + +++ L Y +E+ Sbjct: 402 KILHNAKGVMRVFAEHGWRVEGVTMDTALAAYLVKPGRRSFALDALS---LEYLGRELAP 458 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + +D + + HA+ + +L L +L + ++ P +++ Sbjct: 459 ATADG-QLTLGADDEAEAHALMVQARTVLDLGAAFGERLEQVGATGLLADVELPTSILLA 517 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +E GI D+D L+ + + + + + +D G +FNL SPKQL ++LF +L P Sbjct: 518 SLERAGIAADRDHLEAMERQFAAAVQQAVKEAHDAVGREFNLGSPKQLQEVLFGELNLPK 577 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG D+ + +L R+ +K++ T + L I R+HT Sbjct: 578 TKKTKTGYTTDADALAWLAAQTDHELPVIMLRHREQAKLRVTV-EGLIKSIAT-DGRIHT 635 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 ++ TGRL+S EPNLQNIP++TD G+ IRR F+ + L++ADYSQIELR++AH Sbjct: 636 TFNQTVAATGRLSSTEPNLQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAH 695 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ L + F + D+H VA+++FGV + V +MRR K +++ + YG+S F L+ Q Sbjct: 696 LSQDEGLIEAFTSGEDLHTTVASQVFGVERDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 755 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I EA + YF RF G+ +Y+ + R GY ET+ GRR + ++NS R Sbjct: 756 LNIDAGEARALMDTYFERFGGVRDYLRHAVDEARATGYTETMLGRRRYLPDLNSDNRQRR 815 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQG+AADI + AM+ VH++L + +L+++MLLQ+HDE+V E+ E Sbjct: 816 ETAERMALNAPIQGTAADIVKIAMLRVHRALTEARLSSRMLLQVHDEIVLEIAPGERERV 875 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +I+ M A + LR PL V++ V NW+ Sbjct: 876 EEIVRREMADA----VQLRAPLDVSVGVGQNWE 904 Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 100/254 (39%), Positives = 143/254 (56%), Gaps = 10/254 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NAI GF +ML N+ ++ +HFAV F Sbjct: 23 LMLMDGHSLAYRAFFALPAENFTTVTGQPTNAIYGFASML----ANTLRDEQPTHFAVAF 78 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R+E + +YKANR K P+ Q+ L+ A P + GFEADD+IAT Sbjct: 79 DVSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAPRFAVDGFEADDVIATLA 138 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE GF V I++ D+D QL+S TT LY T V E + E V +K+G+ P + Sbjct: 139 TQAEAAGFEVLIVTGDRDSFQLISDHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPD 198 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ A +K K +N ++ E + Sbjct: 199 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERAEEVKGKA-GQNFRDHLEAVK 257 Query: 242 LSRKLVMLRTDVPI 255 L+R+L + DV + Sbjct: 258 LNRRLTEMIRDVEL 271 >gi|115252786|emb|CAK98222.1| probable dna polymeraseIprotein [Spiroplasma citri] Length = 869 Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 188/533 (35%), Positives = 294/533 (55%), Gaps = 35/533 (6%) Query: 455 KFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL 513 +F + + K+ ++ K + L R I ++ E D+ML YV +S + S+ Sbjct: 357 QFLNDNKYQKLTYHAKSLIVALARDNIFVQNIEYDMMLAGYVYNSNAKN----SLDTYIN 412 Query: 514 SYTRKEIL-------KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLI----V 562 + +K+IL K K IP D I ++ E ++ I +L RPK+I Sbjct: 413 LFEKKQILTDEFFYGKGVKKQIPADVI---KLGHFIGEKASYIHKL----RPKIIELLKT 465 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 + +Y ++ P+ +++MEI G+++DQ L + I K + L I D++ ++ N Sbjct: 466 NQQYDLYHNIELPIAFALARMEINGVKVDQYELTTQTLRIEKIVQELNNEINDIAQKEIN 525 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 +SPKQ+ ++LF P K T Q + LE+I ++ II IL++R+ K+ S Sbjct: 526 PNSPKQISELLFQNFSLPDRKKGSTAQ-----ETLEEIK-NNHVIIPKILDYRKYQKLYS 579 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPP 741 TY + +I +VHT Y T TGRL+S+EPN+QNI I+ + +++R+ F+ S P Sbjct: 580 TYLKGMEKYIFADG-KVHTIYKQTLTNTGRLSSVEPNMQNISIRDHIQKEVRKIFVVSSP 638 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 L+S DYSQIELRILAH++K L F N+ DIH A +IF ++ ++++P +RR A Sbjct: 639 DNILLSCDYSQIELRILAHMSKDQDLIAAFNNNEDIHTNTAMKIFNLSKDEITPNIRRSA 698 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +NF IIYGIS F LAT L I ++A I Y+ +FP I +I+K F +QNGYV T Sbjct: 699 KAVNFGIIYGISDFGLATDLNISVAKAKAIINNYYQQFPTIKAFIDKQVEFCKQNGYVTT 758 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 IF R+ + EIN R +R A+N PIQGSAADI + A+ ++ + L K++ Sbjct: 759 IFNRKRYVSEINDRNYMQREFGKRIAMNMPIQGSAADIIKIALKNIDQEFLKLNLKAKII 818 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+FE+P+ E+ +I+ ME + L V L V++K +W + Sbjct: 819 AQIHDELIFEIPQVELIQVQKIVKILMEDST----KLDVKLIVDMKTGLSWYD 867 Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 104/300 (34%), Positives = 161/300 (53%), Gaps = 17/300 (5%) Query: 7 LFLVDGSSFIYRAFYATPL---LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + L+DG+S ++RAFYAT + + DG P NA+ F NML K+L+ + S+ V Sbjct: 4 VLLIDGNSLLFRAFYATAYNGEMLKSLDGTPTNAVYAFTNMLNKILKANNYYSVV----V 59 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD FR+++ DYK R K P L+ Q P+V+ ++ IP +E +G+EADD++ Sbjct: 60 AFDKGKKNFRHDLLVDYKDGRSKTPNELIVQFPIVKEFLDSYQIPYLEQEGYEADDLLGC 119 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPEKMV 180 +AEKE F V I S+DKDL QL++ T + + + D+ +I KWGI P ++ Sbjct: 120 LAMLAEKEDFYVDIFSSDKDLYQLITNKTNILVPRQGDSADVIDEAALIAKWGIKPLQVP 179 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+ L GD DN+ G+P +G KTA L++EY ++EN+ N IK ++N+L + E+A Sbjct: 180 DLKGLMGDPSDNLKGVPKVGEKTAIKLIKEYHSIENLYDNIEHIK-GALQQNLLNHKESA 238 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDC--NGPRLISFLKALEFTKLINRVATTYDCDAAN 298 L +K+ + D I LEH N L+ F + ++ D D N Sbjct: 239 LLCKKIATIFCD----INLEHFTFTSFSPNHETLMQFYLKYNMNSFVTKLFNNQDNDIQN 294 >gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40] gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40] Length = 875 Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 183/513 (35%), Positives = 287/513 (55%), Gaps = 19/513 (3%) Query: 465 IGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 IG N+KYD ++V + +GI + + D M++++ LD SS + ++A+K +Y + Sbjct: 377 IGQNLKYDFRIVANNFGIEPPKNYSDTMILAW-LDDPSSSVGMDNLAKKLYNYETIKFES 435 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 K + ++A E++ + L+ + KL E +L++ + ++ P I + Sbjct: 436 VVKKGEDFSSVDLQSASKYASEDAWITLKFYKTFTNKL-EESMLNIAKNVEFPFILTLFD 494 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI+++ + L+ + L +L IY+L ++FN++S KQLG +LF LK P+ Sbjct: 495 MESNGIRLNLEKLRALILRNDSALRALTTEIYELCEQRFNINSSKQLGSVLFDYLKLPAK 554 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHT 701 KTKTG + T L ++ +P I+ ILE+R+L K++STY + L N I RV+T Sbjct: 555 KKTKTG-YSTDESVLSEL-LDLHPSIEKILEYRELYKLQSTYCEPLLNLAIKDENHRVYT 612 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHI 761 + T TGRL+S PNLQNIP + +L + +R F LIS DYSQIELR+LAH Sbjct: 613 NFIQTGTATGRLSSKNPNLQNIPARGNLAKDMRAVFEPKDGYSLISLDYSQIELRLLAHF 672 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 + L + F+N DIH A IFG + + Q R AK+INF +IYG+ +L+ +L Sbjct: 673 SCDPALIEAFKNGDDIHARTAISIFG----ESNTQNRAIAKSINFGLIYGMGSNKLSNEL 728 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I + A +YI RYF F I ++++ KN + +G+VET+ GR+ ++D + + Sbjct: 729 SIDKKSAKEYIDRYFKAFSTIKDFLDSIKNRAKNDGFVETLIGRKRYFDFGGATPMQLA- 787 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 + ER A+N QGSAADI + AMI V L D KMLLQIHDEL+FEV +E + + Sbjct: 788 MFEREAVNTKFQGSAADIIKIAMIKVKDLLNDD---AKMLLQIHDELIFEVRDEIAPSFA 844 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + + M+ + L VPL N ++ NW + Sbjct: 845 KNVQELMQTV----VALNVPLVANWGMAKNWGD 873 Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 165/292 (56%), Gaps = 17/292 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R +YA L + G P + GF N ++ L Q+ + I FA+ D Sbjct: 4 LTIIDTFGFFFRLYYAMSGL-KSQSGKPSGMVHGFANFIYNLKQDFPSDYIV--FAL--D 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++I P+YKANR P+ L QLP+ + G+ ++ ++G+EADDIIA++ Sbjct: 59 SGGKTFRSQIDPNYKANRVSPPQELKDQLPVCIDMIEKMGLCSLRVEGYEADDIIASFIK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 ++ + + I++ DKDL QL+ ++ K+E + + +K+G+ PE++ AL Sbjct: 119 NSKDQDLEIRIVTHDKDLYQLIDDRVSIFSPAKKELYNRDGCYEKYGVYPEQIRDFLALC 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPG+ GIG K A LL E+G++EN+ N S+++ ++ + + E E A +S++L Sbjct: 179 GDSADNIPGVKGIGEKGAKKLLDEFGSIENLYENLSQVRNERTKNMLFESKENAFISKRL 238 Query: 247 VMLRTDV----------PITIPLEHLI--LEDCNGPRLISFLKALEFTKLIN 286 L ++ P + PL +I L+D + RL++ LK+ + K+++ Sbjct: 239 ATLYDELETPNLQNAIFPTSNPLLKVIDTLKDYSLSRLLATLKSSDEDKILS 290 >gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG] gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF] Length = 914 Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 174/520 (33%), Positives = 284/520 (54%), Gaps = 26/520 (5%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K V +G+++ G D L +Y++ GR + + +++ L Y +E++ Sbjct: 407 KVMHDAKGLMRVFGEHGMTVAGVAMDTALGAYLVKPGRRTFALDALS---LEYLGRELVP 463 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLR---PKLIVEKLLHVYERLDKPMID 578 +++S + +D + Q + + IL L L P++ E LL ++ P Sbjct: 464 AQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGAEGLL---TDIELPTSA 520 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 ++++ME GI D++ L+++ + + + + G +FNL SPKQL ++LF L Sbjct: 521 LLARMERAGIAADREHLEEMERQFAGAVEQAVREAHAAVGHEFNLGSPKQLQEVLFGGLN 580 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDN----PIIKNILEWRQLSKIKSTYADSLPNHINK 694 P KTKTG + T A L + G P++ +L R+ +K++ST + L I Sbjct: 581 LPKTRKTKTG-YTTDADSLAWL-AGQTEHELPVL--MLRHREQAKLRSTV-EGLIKSIAP 635 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753 R+HT ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQI Sbjct: 636 -DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQI 694 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELR++AH+++ L F + D+HR VA +F V V +MRR K +++ + YG+S Sbjct: 695 ELRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYGLS 754 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 F L+ QL I EA + YF RF G+ +Y+ + R GY T+ GRR + ++N Sbjct: 755 AFGLSQQLGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLPDLN 814 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S R ER A+NAPIQG+AADI + AM+ V ++L + +L ++MLLQ+HDE+V E+ Sbjct: 815 SDNRQRREAAERMALNAPIQGTAADIVKIAMLGVDRALREAELTSRMLLQVHDEIVLELA 874 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E +I+ M A LR PL V++ V +W+ Sbjct: 875 PGEREPVEEILRREMAAAA----QLRAPLTVSVGVGRDWE 910 Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 158/307 (51%), Gaps = 12/307 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NAI GF +ML N+ ++ +HFAV F Sbjct: 27 LMLMDGHSLAYRAFFALPAENFTTSTGQPTNAIYGFASML----ANTLRDEQPTHFAVAF 82 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R E + +YKANR K P+ Q+ L+ ++GFEADDIIAT Sbjct: 83 DVSRKTWRAEEFTEYKANRAKTPDEFRGQVELIGELLDTMHADRFAVEGFEADDIIATLA 142 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE GF V I++ D+D QLVS TT LY T V E + E V +++G+ P + Sbjct: 143 TQAEAAGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRYTPEKVEERYGLTPAQYPD 202 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ A +K K +N ++ E + Sbjct: 203 FAALRGDPSDNLPGIPGVGEKTAAKWITQFGSFAELVERAEEVKGKA-GQNFRDHLEAVK 261 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT--KLINRVATTYDCDAANI 299 L+R+L + DVP+ E L + +L L LE L R+ Sbjct: 262 LNRRLTEMVRDVPLDKAPEDLERAAYDRKQLAVLLDTLEIRNPSLRERLLAVDPGAEQEQ 321 Query: 300 EPVVLDI 306 EPV D+ Sbjct: 322 EPVTEDV 328 >gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] Length = 905 Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 155/405 (38%), Positives = 238/405 (58%), Gaps = 8/405 (1%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LSGEKFNLSSPKQLG 630 L+ P+++V++ ME GI +D D L ++ A+ +++ +++ +D + GE+ NL SPKQL Sbjct: 504 LELPIVEVLATMEQAGIAVDLDALHELEADYDAQVVAAQQDAWDAIGGEQVNLGSPKQLQ 563 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 +LF L P KTKTG + +P + +L R SK++ST L Sbjct: 564 VVLFETLGLPKTKKTKTGYTTDAEAIADLSEKAPHPFLDALLRHRDASKLRST-VQGLIK 622 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISAD 749 I R+HT Y TGRL+S +PNLQNIPI+T+ G++IRR F+ L+SAD Sbjct: 623 SIGD-DGRIHTTYQQTIAATGRLSSTDPNLQNIPIRTESGRRIRRVFVVGEGYDCLMSAD 681 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIE+R++AH++ L Q F + D+HR V + +FGV +V+ +MR K +++ + Sbjct: 682 YSQIEMRVMAHLSGDEGLIQAFNDGEDLHRFVGSRVFGVEPSEVTSEMRAKVKAMSYGLA 741 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YG+S F L+ QLRI +EA + YF RF G+ +Y+ + + R GY ET+ GRR + Sbjct: 742 YGLSAFGLSKQLRISTAEAQRLMDGYFERFGGVRDYLRQIVDDARATGYTETMMGRRRYL 801 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 ++ S R++ ER A+NAPIQGSAADI ++AM+ V ++L L +++LLQ+HDEL+ Sbjct: 802 PDLTSDNRQRRDMAERMALNAPIQGSAADIMKKAMLGVDEALRAANLRSRVLLQVHDELI 861 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EV E +I+ M A +L VPL VN+ +WQ+ Sbjct: 862 VEVGAGERDEVERIVREQMGAAA----DLAVPLDVNVGTGRSWQD 902 Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 110/291 (37%), Positives = 158/291 (54%), Gaps = 11/291 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G NA+ GF +ML LL++ +H AV F Sbjct: 20 LLLLDGHSLAYRAFFALPAENFSTSTGQHTNAVYGFTSMLINLLRDEEP----THLAVAF 75 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+E Y +YKA R P Q+ LV+ A G+ +E+ G+EADDI+AT T Sbjct: 76 DVSRQTFRSEEYAEYKAGRATTPSEFKGQVSLVKEVLDAMGVTHLEVDGYEADDILATLT 135 Query: 126 YIAEKEGF-AVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMV 180 A + GF V + S D+D +QLV T LY V E ++ V +K+ +PPE+ Sbjct: 136 TQATQAGFDEVLLCSGDRDALQLVRDNVTVLYPVKGVSELTRMTPAAVEEKYSVPPERYS 195 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L AL G+ DN+PG+PG+G KTAA + +YG+LE ++ N +IK K EN+ + + Sbjct: 196 DLAALVGEKSDNLPGVPGVGPKTAAKWIGQYGDLEGLVANVDQIKGKA-GENVRAHLDGV 254 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 +R+L L DVP+ + + L D N + LEF L +R+ T Sbjct: 255 LRNRRLNQLLVDVPLPVTPDDLARHDWNRDEVHRVFDGLEFKVLRDRLFAT 305 >gi|119963436|ref|YP_947809.1| DNA polymerase I [Arthrobacter aurescens TC1] gi|119950295|gb|ABM09206.1| DNA polymerase I [Arthrobacter aurescens TC1] Length = 880 Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 172/529 (32%), Positives = 287/529 (54%), Gaps = 13/529 (2%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIA 509 S L ++ ++ K+ H K LH G+ + G +D + Y++ R S+D+A +A Sbjct: 357 SVLARWLQDPEEAKVLHEFKSALKALHNRGLGLEGVVDDTSISGYLIQPDRRSYDLAELA 416 Query: 510 QKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV 568 Q L + +S + + + +D ++++ V+ L +L K + Sbjct: 417 QVHLKISLAAAAAQSGQLELDLSGDTDEVAATALVQHAAVVHALSKHFEKELAEIKADAL 476 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 L+ P+ V++QME+TGI + D + + A+++K + + +E + G + NL SPKQ Sbjct: 477 LTTLELPVARVLAQMELTGIFVSTDRMDEQLADLTKVIENAQEQAFAAIGHEVNLGSPKQ 536 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI--NCGDNPIIKNILEWRQLSKIKSTYAD 686 L +LF +L P K K+G + T A L+ + G +++ ++ R+ SK+ + + Sbjct: 537 LQTVLFDELGLPKTKKIKSG-YTTDAASLKGLLEKTGHEFLVQ-LMAHRESSKL-AQMVE 593 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKL 745 +L + R+HT Y+ TGR++S PNLQNIP++++ G+++R F +S + L Sbjct: 594 TLKKSVADDA-RIHTTYAQNIAATGRISSNNPNLQNIPVRSEEGRRVRSIFMVSEGYECL 652 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 +SADYSQIE+RI+AH++ L Q +++ D+HR V A IF V +V+ MR K ++ Sbjct: 653 LSADYSQIEMRIMAHLSGDQALIQAYKDGEDLHRFVGARIFNVEPAEVTSAMRSKVKAMS 712 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 + + YG++ F L+ QL I EA +K Y+ RF + Y++ ++ R +GY TI GR Sbjct: 713 YGLAYGLTSFGLSKQLEISVDEARTLMKDYYDRFGAVRAYLDGVRDQARVDGYTATIEGR 772 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIH 925 R + ++ S R ER A+N+PIQGSAADI +RAM+ V L L ++MLLQ+H Sbjct: 773 RRYLPDLTSTNRQAREAAERIALNSPIQGSAADIIKRAMLGVSAELASQGLKSRMLLQVH 832 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 DELV EV E ++++ M A L VPL V I V ++W E Sbjct: 833 DELVLEVAPGEREAVEKLVIEQMGSAA----ELSVPLDVQIGVGSSWYE 877 Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 89/255 (34%), Positives = 131/255 (51%), Gaps = 17/255 (6%) Query: 17 YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPA-VTFRN 74 +RAFYA P + G NA+ GF +ML L+++ + +H AV FD TFR Sbjct: 3 FRAFYALPAENFSTARGQYTNAVHGFTSMLINLIKDQKP----THVAVAFDVSDDTTFRK 58 Query: 75 EIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFA 134 Y +YK R P Q+ L+ +A+GI I + G+EADD++AT + GF Sbjct: 59 AEYSEYKGGRNATPAEFAGQIGLIAKVMEAWGIRTIAMPGYEADDVLATLAAQGDAAGFE 118 Query: 135 VTIISTDKDLMQLVSPTT-CLY---DTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSI 190 V ++S D+D QL++ LY K+D + +K+ + P L AL G++ Sbjct: 119 VLLVSGDRDAFQLINDNVFVLYPKQGVSNIPKMDAAAIEEKYFVKPGLYSDLAALVGETA 178 Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAETARLSRKLV 247 DN+PG+PG+G KTAA + YG LE IL N I K +EN+ E + +R+L Sbjct: 179 DNLPGVPGVGPKTAAKWINLYGGLEGILENLDSIGGKVGGALKENL----ENVKRNRRLN 234 Query: 248 MLRTDVPITIPLEHL 262 L TD+ + I L L Sbjct: 235 QLLTDLDLPITLADL 249 >gi|226306809|ref|YP_002766769.1| DNA polymerase I [Rhodococcus erythropolis PR4] gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4] Length = 915 Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 176/535 (32%), Positives = 296/535 (55%), Gaps = 12/535 (2%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRS 501 +T T E + L + + K H K+ L G ++ G D L +Y++ G+ Sbjct: 383 STATPEDEAALGDWLADASQPKALHEAKWAIHALRGRGWTLGGLTSDTALAAYLVRPGQR 442 Query: 502 SHDIASIAQKWLSYT-RKEILKSRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPK 559 S ++ ++ ++L R E + S+ D D++ E A+ ++ +L L L + Sbjct: 443 SFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAEAAETAMLSAQAVLDLAAALDTE 502 Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 L + + ++ P+ ++Q+E TGI +D L + + + + + Y++ + Sbjct: 503 LESIESKSLLSDMELPLTIELAQIEATGIAVDSAHLHDLQSRFASQVADAANSAYEVIDK 562 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLS 678 + NL SPKQL +LF +L P KTKT + T A+ L+ + + +P ++++L R + Sbjct: 563 QINLGSPKQLQVVLFEELDMPKTKKTKT-GYTTDAEALQGLFDKTGHPFLEHLLAHRDAT 621 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 ++K T D L + + R+HT ++ TGRL+S +PNLQNIP++ D G++IR F+ Sbjct: 622 RMKVT-VDGLLKAVAE-DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRNDAGREIRDGFV 679 Query: 739 -SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797 L++ADYSQIE+RI+AH++ L + F D+H V + FGV IE+V+P++ Sbjct: 680 VGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPEL 739 Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857 RR K +++ + YG+S + LA+QL+I EA + YF RF G+ +Y+ R++G Sbjct: 740 RRRVKAMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDG 799 Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917 Y T++GRR + ++NS R + ERAA+NAPIQG+AADI + AMI+V K+L + L Sbjct: 800 YTSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQKALAEAGLK 859 Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++MLLQ+HDELV EV E+ + ++ M A I L VPL V++ +W Sbjct: 860 SRMLLQVHDELVLEVVASELEEVTALVKDKMATA----IELSVPLDVSVGTGRSW 910 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 107/293 (36%), Positives = 162/293 (55%), Gaps = 16/293 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P + K H G NA+ GF +ML LL++ + +H A F Sbjct: 28 LMLLDGHSLAFRAFYALPAENFKTHSGQATNAVYGFTSMLINLLRDEQP----THLAAAF 83 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR +++P+YKA R K P+ Q+ + + A GIP + +GFEADD+IAT T Sbjct: 84 DVSRQTFRADLFPEYKAQRAKAPDEFKGQIDITKDVLGALGIPVMAEEGFEADDVIATLT 143 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 AE G+ V +++ D+D +QLV+ T LY V E + V +K+ + P + Sbjct: 144 TQAEALGYRVLVVTGDRDSLQLVTDNVTVLYPKKGVSELTRFTQTAVEEKYSLTPSQYPD 203 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEYAE 238 AL GD DN+PGIPG+G KTA ++EYG+L+ ++ N +++ K REN+ Sbjct: 204 FAALRGDPSDNLPGIPGVGEKTATKWIREYGDLQGLVDNVDKVRGKVGDSLRENL----A 259 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 L+R+L + DVP+ E L+L + ++ + LEF L +R+ T Sbjct: 260 NVLLNRQLTEMVRDVPLPYTPEQLVLAPWDREKIHALFDDLEFKVLRDRLFAT 312 >gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24] gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24] gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24] Length = 907 Score = 286 bits (733), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 171/513 (33%), Positives = 278/513 (54%), Gaps = 12/513 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K VL +G S+ G D L +Y++ GR S D+ +++ L Y +E+ Sbjct: 400 KVFHNAKGAMRVLAEHGWSVAGVGMDTALAAYLVKPGRRSFDLDALS---LEYLHRELAP 456 Query: 523 SRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + + +D + E + + IL L +L + ++ P +++ Sbjct: 457 AAAADGQLAFGADEGAEAEVLMVQARAILDLGETFESRLADVGAADLLRDMELPTSALLA 516 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +ME GI D++ L+ + + + + + +G +FNL SPKQL ++LF +L P Sbjct: 517 RMERHGIAADREHLQAMEQMFAGAVQQAVKEAHAAAGREFNLGSPKQLQEVLFGELNLPK 576 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG DN + +L R+ +K++ T + L I R+HT Sbjct: 577 TKKTKTGYTTDADALAWLAAQTDNELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIHT 634 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQIELR++AH Sbjct: 635 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAH 694 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ L + F + D+H AA++F V V +MRR K +++ + YG+S F L+ Q Sbjct: 695 LSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 754 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I +EA + YF RF G+ +Y+ + + R GY T+FGRR + ++NS R Sbjct: 755 LNIEAAEARGLMDAYFERFGGVRDYLRRVVDEARATGYTATLFGRRRYLPDLNSDNRQRR 814 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQG+AADI + AM++V K+L + L ++MLLQ+HDE+V E+ E A Sbjct: 815 EAAERMALNAPIQGTAADIVKIAMLNVDKALREADLKSRMLLQVHDEIVLEIAPGERAAA 874 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +++ M A + LRVPL V++ +W+ Sbjct: 875 EELVRREMANA----VQLRVPLGVSVGAGPDWE 903 Score = 174 bits (441), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 102/258 (39%), Positives = 150/258 (58%), Gaps = 12/258 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NAI GF +ML N+ ++ +HFAV F Sbjct: 19 LMLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDEAPTHFAVAF 74 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R+E + +YKANR K P+ Q+ L+ + +P ++GFEADD+IAT Sbjct: 75 DVSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDSMHVPRFAVEGFEADDVIATLA 134 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EGF V I++ D+D QLVS TT LY T V E + E V +K+G+ P + Sbjct: 135 TEAEAEGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPD 194 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ +K K +N+ ++ E+ + Sbjct: 195 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVDEVKGKA-GQNLRDHLESVK 253 Query: 242 LSRKLVML--RTDVPITI 257 L+R+L L R ++P T+ Sbjct: 254 LNRRLTELERRVELPRTV 271 >gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707] gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707] Length = 912 Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 179/511 (35%), Positives = 290/511 (56%), Gaps = 12/511 (2%) Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK--EILKS 523 H K L G ++ G D L +Y++ G+ S ++ ++ ++L + E + Sbjct: 404 HEAKRAMHALRGRGWTLAGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRVEESGQQ 463 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 + S + + +D++ E I S +L L L +L + + ++ P+++V++ + Sbjct: 464 QLSLLDDEDAADAEAAEGEILRSRAVLDLAAALDTELADIEATGLLADMELPLLEVLANL 523 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E TGI +D L + + + + E Y + G++ NL SPKQL +LF +L P Sbjct: 524 ESTGIAVDTTHLHDLQSAFAARVAEAAEAAYAVIGKQINLGSPKQLQVVLFDELDMPKTK 583 Query: 644 KTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKT + T A L+ + +P ++++LE R +++K T D L + + R+HT Sbjct: 584 KTKT-GYTTDADALQSLFEKTQHPFLEHLLEHRDATRLKVT-VDGLLKTVAE-DGRIHTT 640 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761 ++ TGRL+S EPNLQNIP++TD G++IR F+ + L++ADYSQIE+RI+AH+ Sbjct: 641 FNQTVAATGRLSSTEPNLQNIPVRTDAGRQIRDGFVVGEGYETLLTADYSQIEMRIMAHL 700 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 + L + F D+H V + FGV IE+V+P++RR K +++ + YG+S F LA QL Sbjct: 701 SGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQL 760 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 +I EA + YF RF G+ +Y+ + R+ GY ET+FGRR + ++NS R Sbjct: 761 KISTEEARQQMDAYFARFGGVRDYLHEVVEQARKVGYTETLFGRRRYLPDLNSDNRQRRE 820 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 + ERAA+NAPIQG+AADI + AMI V ++L + LA++MLLQ+HDELV EV E Sbjct: 821 VAERAALNAPIQGTAADIIKVAMIDVQRALREAGLASRMLLQVHDELVLEVAAGERERVE 880 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 Q++ M A I+L VPL+V++ +W Sbjct: 881 QLVREKMAAA----IDLSVPLEVSVGTGRSW 907 Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 106/296 (35%), Positives = 161/296 (54%), Gaps = 22/296 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + K G NA+ GF +ML LL++ + +H A F Sbjct: 25 LMLLDGHSLAYRAFFALPAENFKTQSGQATNAVYGFTSMLINLLRDEQP----THVAAAF 80 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E +P+YKANR K P+ Q+ + + A GIP + I+GFEADD+IAT T Sbjct: 81 DVSRQTFRAEAFPEYKANRSKTPDEFKGQVEITKDVLAAMGIPVMAIEGFEADDVIATLT 140 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 A G+ V +++ D+D +QLV+ P + D + +E +K+G+ P++ Sbjct: 141 TQATALGYRVLVVTGDRDSLQLVTEDVTVLYPRKGVSDLTRFTPAAVE---EKYGLTPQQ 197 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILE 235 AL GD DN+PGIPG+G KTAA ++EYG+LEN++ + +++ K R N+ Sbjct: 198 YPDYAALRGDPSDNLPGIPGVGEKTAAKWIREYGSLENLVNDVDKVRGKVGDALRANV-- 255 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 + L+R L + DV + + L L + R+ + LEF L +R+ T Sbjct: 256 --NSVLLNRHLTEMVRDVAVPYTPDQLALAPWDRERIHALFDDLEFKVLRDRLFAT 309 >gi|333027886|ref|ZP_08455950.1| putative DNA polymerase I [Streptomyces sp. Tu6071] gi|332747738|gb|EGJ78179.1| putative DNA polymerase I [Streptomyces sp. Tu6071] Length = 914 Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 174/520 (33%), Positives = 284/520 (54%), Gaps = 26/520 (5%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K V +G+++ G D L +Y++ GR + + +++ L Y +E++ Sbjct: 407 KVMHDAKGLMRVFGEHGMTVAGVAMDTALSAYLVKPGRRTFALDALS---LEYLGRELVP 463 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLR---PKLIVEKLLHVYERLDKPMID 578 +++S + +D + Q + + IL L L P++ E LL ++ P Sbjct: 464 AQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGAEGLL---TDIELPTSA 520 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 ++++ME GI D+ L+++ + + + + G +FNL SPKQL ++LF +L Sbjct: 521 LLARMERAGIAADRAHLEEMERQFAGAVEQAVREAHAAVGHEFNLGSPKQLQEVLFGELN 580 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDN----PIIKNILEWRQLSKIKSTYADSLPNHINK 694 P KTKTG + T A L + G P++ +L R+ +K++ST + L I Sbjct: 581 LPKTRKTKTG-YTTDADSLAWL-AGQTEHELPVL--MLRHREQAKLRSTV-EGLIKSIAP 635 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753 R+HT ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQI Sbjct: 636 -DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQI 694 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELR++AH+++ L F + D+HR VA +F V V +MRR K +++ + YG+S Sbjct: 695 ELRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFNVEPAAVDAEMRRKIKAMSYGLAYGLS 754 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 F L+ QL I EA + YF RF G+ +Y+ + R GY T+ GRR + ++N Sbjct: 755 AFGLSQQLGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLPDLN 814 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S R ER A+NAPIQG+AADI + AM+ V ++L + +L ++MLLQ+HDE+V E+ Sbjct: 815 SDNRQRREAAERMALNAPIQGTAADIVKIAMLGVDRALREAELTSRMLLQVHDEIVLELA 874 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E +I+ M A LR PL V++ V +W+ Sbjct: 875 PGEREPVEEILRREMAAAA----QLRAPLTVSVGVGRDWE 910 Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 158/307 (51%), Gaps = 12/307 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NAI GF +ML N+ ++ +HFAV F Sbjct: 27 LMLMDGHSLAYRAFFALPAENFTTSTGQPTNAIYGFASML----ANTLRDEQPTHFAVAF 82 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R E + +YKANR K P+ Q+ L+ ++GFEADDIIAT Sbjct: 83 DVSRKTWRAEEFTEYKANRAKTPDEFRGQVELIGELLDTMHADRFAVEGFEADDIIATLA 142 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE GF V I++ D+D QLVS TT LY T V E + E V +++G+ P + Sbjct: 143 TQAEAAGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRYTPEKVEERYGLTPAQYPD 202 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ A +K K +N ++ E + Sbjct: 203 FAALRGDPSDNLPGIPGVGEKTAAKWITQFGSFAELVERAEEVKGKA-GQNFRDHLEAVK 261 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT--KLINRVATTYDCDAANI 299 L+R+L + DVP+ E L + +L L LE L R+ Sbjct: 262 LNRRLTEMVRDVPLDKAPEDLERAAYDRKQLAVLLDTLEIRNPSLRERLLAVDPGAEQEQ 321 Query: 300 EPVVLDI 306 EPV D+ Sbjct: 322 EPVTEDV 328 >gi|291456503|ref|ZP_06595893.1| DNA polymerase I [Bifidobacterium breve DSM 20213] gi|291381780|gb|EFE89298.1| DNA polymerase I [Bifidobacterium breve DSM 20213] Length = 951 Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 167/538 (31%), Positives = 288/538 (53%), Gaps = 14/538 (2%) Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSH 503 + + + L +F + EHF I H K +L G+ M D L Y+ + Sbjct: 415 MASSVQTALDRFLKAEHFRTIVHGYKELLHLLSAAGLGMALPMFDTKLGGYLAQPDFHAD 474 Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPID-KISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 ++ A+ +L + + + + D + ++ + E + + VI +L + L P + Sbjct: 475 NLNQAAEHFLDIHVVDAEQPAQGVLDFDDEHTEEDLNERRVHDLAVIRELAVTLGPVIDE 534 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 + + ++ P+ V+ ME +G +ID+ L + + + +E + +G + N Sbjct: 535 RRQYWLMRAIELPVSRVLHGMEQSGAKIDRSRLTDMRDRFAADARQAQEMAWQYAGGEIN 594 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQ 676 L SPKQL +LF + +TK G + T A L+ + N N + +L R+ Sbjct: 595 LQSPKQLQKVLFVDMGLKPTKRTKNGSYTTNAAALQNLYIHSVDNEQANGFLGALLRHRE 654 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 +K+K +L + NK +R+HT + TGRL+S++PNLQNIP + +G++IR Sbjct: 655 TNKLKQI-VQTLIDATNKADERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAVGREIRSV 713 Query: 737 FI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F+ + L+S DYSQ+ELRI+A ++ L + F + D H+ VA+ ++GV +++++ Sbjct: 714 FVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYGVPVDQITG 773 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 R H K +++ + YG+S + LA QL I + EA RYF F +H+Y+E R+ Sbjct: 774 DQRSHVKAMSYGLAYGLSTYGLAQQLNIAQREAEALKNRYFDTFGKVHDYLESLVATARE 833 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GY ETIFGRR ++ + S R+ ERAA+NAPIQGSAADI + AMI ++L++ Sbjct: 834 KGYTETIFGRRRYFPALRSTNRMARDAAERAALNAPIQGSAADIMKIAMIRAGQALDEAG 893 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 + ++++LQIHDELV E+ E +++I ++ME A ++L VPL V+ + ++WQ Sbjct: 894 VKSRIILQIHDELVVEIAPGESEQVTELIRNAMEHA----VDLAVPLDVSCGIGSDWQ 947 Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 101/285 (35%), Positives = 153/285 (53%), Gaps = 20/285 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAFYA P+ + G NA+ GF ML ++++ + + H V F Sbjct: 9 LLVVDGHSLAFRAFYALPVENFSTAAGQATNAVWGFATMLSQVIEAEKPD----HLGVAF 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRN++ P YK R PE LL QLPL++ +A G+ IE QG+E DDIIAT Sbjct: 65 DMKGGTFRNDMLPQYKGTREAAPEELLTQLPLIQRMLKALGVTYIEKQGYEGDDIIATLA 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + + G+ ++S D+D QLV T LY D++H ++ K+ + P + Sbjct: 125 TMGDDAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIVDKYKVTPAQY 182 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236 L AL G++ DNIPG+PG+G AA + +YG+L+ I +A + KK R NI Sbjct: 183 PDLAALRGETADNIPGVPGVGDGYAAKWINQYGSLDAICEHADEVTGKKGEALRANI--- 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 + +L+RK+ L DV + + +E L + ++ + K LEF Sbjct: 240 -DQVKLNRKVNALVRDVDLGVDIEDLTFGSVDVAQIDALFKELEF 283 >gi|262037120|ref|ZP_06010613.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264] gi|261748851|gb|EEY36197.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264] Length = 842 Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 165/445 (37%), Positives = 267/445 (60%), Gaps = 9/445 (2%) Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524 IG+NIK + G+ R + DIML YVL + SS D+ +I L ++ + Sbjct: 402 IGYNIK----EYLKKGMGYRQYFDIMLAWYVLGT-ESSQDLENIIFSELGVNLEKFEEQF 456 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 K P ++IS+ + + E + + +L +L +L E L +V+E L+ ++ V++ ME Sbjct: 457 KKRKP-EEISEEEKTQFLWERAFYVKELKEILENRLKSEDLTNVFENLENKLVPVLASME 515 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 + GI+I+++ + E+ +N+ LE IY L GE FN+ SPKQL +ILF K+ K Sbjct: 516 MYGIKINKEYFENYKKELQENIEKLEGEIYSLLGEAFNIGSPKQLAEILFDKMGIEPVKK 575 Query: 645 TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYS 704 TKTG + T + LE++ I + +LE+R +K+ STY + LP +++ R+HT ++ Sbjct: 576 TKTG-YSTDVEVLEELALRGIEIAEKLLEYRGFTKLLSTYVEPLPKLADEK-DRIHTTFN 633 Query: 705 LASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKI 764 T TGRL+S PN+QNIP++TD G KIR+ FIS L+S DYSQIELR+LA ++K Sbjct: 634 QNGTSTGRLSSTNPNIQNIPVRTDEGIKIRKGFISEEGWSLVSFDYSQIELRVLAELSKD 693 Query: 765 TPLYQVFENSLDIHRMVAAEIF-GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 L ++ D+H + A +IF + E+V+ + R AK INFSI+YG +PF L+ +L+I Sbjct: 694 ENLVLAYKKDKDLHDLTARKIFFKADEEQVTREERSIAKVINFSILYGKTPFGLSKELKI 753 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 P ++A+ YIK YF ++P + ++E + NG+VET++G R + INS +++ Sbjct: 754 PVADASLYIKTYFEQYPKVKRFLENILENAKLNGFVETLYGTRRYIKGINSSNKNLQAQA 813 Query: 884 ERAAINAPIQGSAADITRRAMISVH 908 R A+N +QG+AA+I ++ MI ++ Sbjct: 814 NRMAVNTVVQGTAANIIKKVMIKLY 838 Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 147/287 (51%), Gaps = 17/287 (5%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++D S+ +YR +A + R G+ A GF N L ++ KE + D Sbjct: 6 ILDTSAVMYRTHFAL-MGMRNSKGMATGATYGFVNTLEGII----KEFNPDYLVACLDIK 60 Query: 69 AVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY-TY 126 R+E YKA+R +P+ L+ Q ++ + IP +I G+EADD+IAT T Sbjct: 61 RSELKRSEELETYKAHRESMPDDLVAQQDMIMSVLDGYKIPKYKINGYEADDVIATLATK 120 Query: 127 IAE--KEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-------EHVIKKWGIPPE 177 +E +E V I++ DKDL QLV+ + K +K + VI+ G+ P+ Sbjct: 121 FSEDKEEEIEVYIVTGDKDLAQLVNGKINIALLGKGDKKSLFRYIRNDNDVIEYLGVTPD 180 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 K+ L L GDS D IPG+ GIG KT L+ +YGNLE++ N IK KR+E ++E Sbjct: 181 KIPDLFGLMGDSSDGIPGVSGIGPKTGVELILKYGNLESLYENIDEIKG-KRKEKLIEDK 239 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 E A LSRKL + ++ + + L +E + +L+S + +EF K Sbjct: 240 EKAFLSRKLATVHRNIEMEYDKDKLKMESKDTEKLLSIYRTMEFKKF 286 >gi|254797027|ref|YP_003081864.1| DNA polymerase I [Neorickettsia risticii str. Illinois] gi|254590261|gb|ACT69623.1| DNA polymerase I [Neorickettsia risticii str. Illinois] Length = 816 Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 177/491 (36%), Positives = 273/491 (55%), Gaps = 43/491 (8%) Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545 FED+ +++Y L++ + D+ + +L T E R Sbjct: 361 FEDLKVIAYPLNTLNT--DLEYLFSHYLGETSPEAFHKR--------------------- 397 Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 + +L+ LR + EK+L +Y ++DKP+I+V+ ME GI +D + L +S +IS Sbjct: 398 ---LNELYDKLRNAMFTEKVLTLYYKVDKPLINVIKHMEKNGISLDVEQLLSLSTQISGK 454 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 L +E I+D +G+ F+L SPKQLG +LF +++ P K KTG T + L ++ Sbjct: 455 LEEIENKIFDTAGKTFSLQSPKQLGKVLFEEMQIPVQKKLKTGLSSTDNEVLTSLSSQGY 514 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHIN--KRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 I +L WR K+K+ Y D L +N ++ R+ T YS T+TGRL+S PNLQNI Sbjct: 515 EIADYLLSWRHYIKLKTAYIDPLLLKVNPSEKKHRISTTYSTTLTLTGRLSSSNPNLQNI 574 Query: 724 PIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 P + + IR+ F + + ADYSQIELRILA+IA + L + D+H + A+ Sbjct: 575 PRE----KNIRKIFTAKEGHYFLCADYSQIELRILAYIANVERLKCALASGTDLHTLTAS 630 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 +IF +K++P +R AK +NF I+YGI+ F L+ QL I + EAA YI++YF +P I Sbjct: 631 QIFKT--DKITPNLRNKAKAVNFGIVYGITNFGLSKQLAISKEEAASYIQKYFDEYPEIK 688 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 Y+ +N +++ YV+TI R+ INS +I I ER+AINAPIQG+AADI R A Sbjct: 689 SYMNHIRNQAKKDTYVKTIMNRKCPIQNINSDNRAISLIAERSAINAPIQGTAADIIRAA 748 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + ++ +L + M++Q+HDELVFE+ + I ++ I ME+ +PL Sbjct: 749 MV---RMAQEKELLSHMVMQVHDELVFELETDAIQQLAKKIKQIMEEPH------GIPLL 799 Query: 964 VNIKVSNNWQE 974 V +K N E Sbjct: 800 VELKHGPNLGE 810 Score = 197 bits (502), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 109/285 (38%), Positives = 163/285 (57%), Gaps = 9/285 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D +F++ A++A P L+ H+ LPV A+ GF N+L K L+ + V D Sbjct: 5 LMIIDAYNFLFSAYFALPNLT--HNELPVGAVYGFLNILLKHLRTK-----PEYLVVALD 57 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR IY +YKANRP +P L PQ L+R + +EI+GFEADDIIAT Sbjct: 58 NGKSTFRETIYNNYKANRPPVPGNLTPQFALLRECVDVLNLNPLEIEGFEADDIIATLVR 117 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 K + I+STDKDLMQLVS + + +K I + V +K+G+ P +M +L Sbjct: 118 KFSKSDLKIKILSTDKDLMQLVSENVHVINPIKNRIIGVNEVKEKFGVFPTQMTDFLSLV 177 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD+ DNIPG+PGIG KTAA LL +G ++N +N + + +E++L + LSRKL Sbjct: 178 GDTSDNIPGVPGIGVKTAAKLLNTFGAIDNFRLN--EVSPARIKESLLRHHGQLTLSRKL 235 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 V L D+ I L+ + + +G +L++FL+ F LI ++ + Sbjct: 236 VSLVDDINIQCSLDCIRYQQQDGTKLLAFLEKYGFKNLIPKLVKS 280 >gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902] gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 879 Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 178/518 (34%), Positives = 292/518 (56%), Gaps = 22/518 (4%) Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517 HF+ IGHN+KYD K++ + + +++ + + D M+++++ + S R + D +A + +Y Sbjct: 378 HFV-IGHNLKYDFKIIQNNFDLNLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 K + + ++A E++ + L+ +L L LL + + + I Sbjct: 435 LHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLET-PLLELAKNCEFDFI 493 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 ++ ME GI++D + L+ + + + +L E IY L ++FNL+SPKQ+GDILF KL Sbjct: 494 KIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKL 553 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696 K PSG K KTG +T + + I +P+I IL++R+L+K+ STY + L + + Sbjct: 554 KLPSGKKGKTGY--STDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKN 611 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 R+++ + T TGRL+S +PNLQNIP + + F++ IS DYSQIELR Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELR 671 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 ILAH ++ L F N DIH A IFG + + + R AK+INF +IYG+ Sbjct: 672 ILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ L+I + A YI++YF F I +Y EK KN +QNG++ T+ GR+ ++D N+ Sbjct: 728 LSQNLKIEANLAKSYIEKYFENFTSIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENAKP 787 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 I + ER +IN+ +QGSAAD+ + AM+ ++K L + K K++LQIHDEL+FEV ++ Sbjct: 788 MQIA-MYERESINSILQGSAADVIKLAMLEINKELNEDK---KLILQIHDELIFEVKDDL 843 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME + L+V LK + ++ NW + Sbjct: 844 CENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 104/331 (31%), Positives = 164/331 (49%), Gaps = 26/331 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L +VD F +R +YA + G I+GF N ++ L + E + + D Sbjct: 4 LTIVDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEYKSDYIVFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EI P+YK NR P LL Q+P+ + G ++ +G+EADDIIA++ Sbjct: 59 SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISVSQEGYEADDIIASFVK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 E V II+ DKDL QL+ T +Y + + D ++K+G+ P ++ AL Sbjct: 119 TCENRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPNQIRDFLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ GIG K A LL E+G++E I N + ++ ++ R +LE E A LS+K Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLSKK 238 Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 L L ++ + T P E +L +++ L+ E L+ ++ D N Sbjct: 239 LASLYDNLEVQNLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292 Query: 299 I---EPVVLDINTTENKGIAIETEIDRDTTI 326 + +V D ENK I +D+++ I Sbjct: 293 LGFKATLVQD----ENKLFEILNTLDKESII 319 >gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176] gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] Length = 879 Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 178/518 (34%), Positives = 292/518 (56%), Gaps = 22/518 (4%) Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517 HF+ IGHN+KYD K++ + + +++ + + D M+++++ + S R + D +A + +Y Sbjct: 378 HFV-IGHNLKYDFKIIQNNFDLNLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 K + + ++A E++ + L+ +L L LL + + + I Sbjct: 435 LHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLET-PLLELAKNCEFDFI 493 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 ++ ME GI++D + L+ + + + +L E IY L ++FNL+SPKQ+GDILF KL Sbjct: 494 KIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKL 553 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696 K PSG K KTG +T + + I +P+I IL++R+L+K+ STY + L + + Sbjct: 554 KLPSGKKGKTGY--STDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKN 611 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 R+++ + T TGRL+S +PNLQNIP + + F++ IS DYSQIELR Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELR 671 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 ILAH ++ L F N DIH A IFG + + + R AK+INF +IYG+ Sbjct: 672 ILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ L+I + A YI++YF F I +Y EK KN +QNG++ T+ GR+ ++D N+ Sbjct: 728 LSQNLKIEANLAKSYIEKYFENFTSIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENAKP 787 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 I + ER +IN+ +QGSAAD+ + AM+ ++K L + K K++LQIHDEL+FEV ++ Sbjct: 788 MQIA-MYERESINSILQGSAADVIKLAMLEINKELNEDK---KLILQIHDELIFEVKDDL 843 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME + L+V LK + ++ NW + Sbjct: 844 CENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 103/331 (31%), Positives = 164/331 (49%), Gaps = 26/331 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R +YA + G I+GF N ++ L + E + + D Sbjct: 4 LTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEYKSDYIVFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EI P+YK NR P LL Q+P+ + G ++ +G+EADDIIA++ Sbjct: 59 SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISVSQEGYEADDIIASFVK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 E V II+ DKDL QL+ T +Y + + D ++K+G+ P ++ AL Sbjct: 119 TCENRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPNQIRDFLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ GIG K A LL E+G++E I N + ++ ++ R +LE E A LS+K Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLSKK 238 Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 L L ++ + T P E +L +++ L+ E L+ ++ D N Sbjct: 239 LASLYDNLEVQNLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292 Query: 299 I---EPVVLDINTTENKGIAIETEIDRDTTI 326 + +V D ENK I +D+++ I Sbjct: 293 LGFKATLVQD----ENKLFEILNTLDKESII 319 >gi|171743097|ref|ZP_02918904.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC 27678] gi|283455894|ref|YP_003360458.1| DNA polymerase I [Bifidobacterium dentium Bd1] gi|171278711|gb|EDT46372.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC 27678] gi|283102528|gb|ADB09634.1| DNA polymerase I [Bifidobacterium dentium Bd1] Length = 949 Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 167/536 (31%), Positives = 291/536 (54%), Gaps = 16/536 (2%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIAS 507 I + L+ + H + H K + +L GI++ D L Y++ + + Sbjct: 415 IANELQHMLDGYHRSMVVHGYKEQQHLLESVGITLPTPLFDTKLAGYLVHPDFHAESLEQ 474 Query: 508 IAQKWLS-YTRKEILKSRKSSIPIDKI-SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 A +L + ++ ++ + ++ +D + S Q ++ I+ + + L+ ++ Sbjct: 475 AAGHFLDLHFEEQSSEATQGTLDLDDMDGSSNTQADELQRHAAIVDMLANVLADLLDQRA 534 Query: 566 -LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 + + ++ P+ V+ ME G Q+D L ++ + + + +E ++ +GE+ NL Sbjct: 535 QFGLLKSIELPVSKVLYGMEHAGAQVDMIRLTEMRDQFAADARQAQEIAWESAGERVNLQ 594 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NCGDNPIIKNILEWRQLS 678 SPKQL ILF + KTK+G + T A L+ + N N + +L R+ + Sbjct: 595 SPKQLQKILFEDMGLKPTKKTKSGSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETN 654 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 K+K +L + N R R+HT + TGRL+S++PNLQNIP + G++IR AF+ Sbjct: 655 KLKQI-VQTLIDATNPRDGRIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRSAFV 713 Query: 739 -SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797 + L+S+DYSQ+ELRI+A ++ L + F + D H+ VA+ ++G+ +E+++ Sbjct: 714 PGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQ 773 Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857 R H K +++ + YG+S + LA QL+I EA +YF F +HEY+E + R+ G Sbjct: 774 RSHVKAMSYGLAYGLSTYGLAQQLKISPKEAESLRNQYFATFGKVHEYLESLVSTAREKG 833 Query: 858 YVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA 917 Y ETI+GRR ++ + SP ++R+ ERAA+NAPIQGSAADI + AMI SL D L Sbjct: 834 YTETIYGRRRYFPGLKSPNRAVRDAAERAALNAPIQGSAADIMKIAMIRAADSLRDACLK 893 Query: 918 TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 ++++LQIHDELV E+ E A+ ++ ++ME A + + VPL + + ++WQ Sbjct: 894 SRIILQIHDELVVEIAPGEAEQATALVRNAMEHA----VTMAVPLDASTGIGSDWQ 945 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 107/297 (36%), Positives = 158/297 (53%), Gaps = 17/297 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P+ + G NA+ GF ML +++ + H AV F Sbjct: 16 LLVVDGHSLAFRAFFALPVENFSTSAGQATNAVWGFATMLSQVIDTEHPD----HLAVAF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRN + P YK R PE LL QLPL++ A G+ IE G+E DD+I T Sbjct: 72 DVKGGTFRNTMLPQYKGTRDAAPEDLLSQLPLIQRMLSALGVTYIEQPGYEGDDVIGTLA 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDT--VKEEK-IDIEHVIKKWGIPPEKMVC 181 + +K G+ ++S D+D QL++ T LY K+ K + E V++K+ + PE+ Sbjct: 132 TMGDKAGYRTLVLSGDRDAFQLINDNITVLYPGHHFKDLKHMTAEAVVEKYHVTPEQYPD 191 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYAE 238 L AL G++ DNIPG+PG+G AA + +YG L+ I+ +A I KK RENI E Sbjct: 192 LAALRGETADNIPGVPGVGDGFAAKWINQYGGLDQIIEHADEITGKKGEALRENI----E 247 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDC 294 +L+R + L D+ + + L+ L + RL LEF + NRV T++ Sbjct: 248 QVKLNRSVNALVRDLELDVTLDDLTFGTVDTARLNDLFSKLEFGIRTRNRVLKTFNA 304 >gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2] gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2] Length = 887 Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 160/403 (39%), Positives = 233/403 (57%), Gaps = 6/403 (1%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 L+ P+I V+ ME GI +D D ++S L L +I +GE FN+ S +QL Sbjct: 489 LEIPLIPVLVSMEQAGIGVDLDAFAGFLDDVSTQLDELTRSIIRHAGEPFNIRSSQQLAA 548 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 ILF KL G KT TGQ T Q LE I +PI+++ILE+R L K++STY + LP Sbjct: 549 ILFDKLDIKEGNKTATGQRSTANQVLEAIRS-RHPIVEDILEYRMLEKLRSTYLEPLPKL 607 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 + + + R+HT ++ +T TGRL+S +PNLQNIPI+ G ++R FI+ P L +ADYS Sbjct: 608 VGEDS-RLHTHFNQLATATGRLSSSQPNLQNIPIRGKHGPRMRACFIAGPGAMLAAADYS 666 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELR+LAH + L F N DIH AA + + V RR+AKTINF +IYG Sbjct: 667 QIELRVLAHFSGDPALIDAFRNDEDIHTRTAALLTDKQPQDVLADERRNAKTINFGLIYG 726 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 + P +LA +L I ++A ++I+RYF + + Y + +G+V T+ GRR E Sbjct: 727 MGPQKLARELDITVNQAKEFIERYFDKLATLKAYYDTIVKDAESHGFVTTLAGRRRLLPE 786 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 ++S + + + R A+N IQGSAADI + AM++ HK + L ++LQ+HDEL+ E Sbjct: 787 LHSRNTQLVSQARRQAVNTVIQGSAADIIKMAMVAAHKDKDLAALGAHVILQVHDELIIE 846 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 PE I A + + M+ +L VPLKV++ + W E Sbjct: 847 APEASIRPAGERLKTIMQSVA----DLAVPLKVDLGLGRTWAE 885 Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/280 (33%), Positives = 144/280 (51%), Gaps = 10/280 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++L+DG++ YRAFYA L+R DG P NAI N ++L N ++ + A + D Sbjct: 14 VYLIDGTALFYRAFYARTDLARA-DGFPTNAI----NTTLRVLLNMLRDENPRYVAFMMD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+++Y YKA RP +PE L Q+ VR + G+ + G EADD I Sbjct: 69 GKGPTFRHQLYDRYKAQRPAMPEPLAMQIEPVRRGVELLGVRLLVSDGVEADDCICALAK 128 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV-KEEK-IDIEHVIKKWGIPPEKMVCLQA 184 ++E V ++++DKDL Q + + + K EK I +E ++ G+ P + QA Sbjct: 129 RYKQE-RPVVVVASDKDLKQCLDHNVVILNQAGKTEKIITLESFREEEGMEPSQWPDFQA 187 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 + GDS DNIPGIP +G TA +++ LE + N + + K RE + E L R Sbjct: 188 IIGDSADNIPGIPKVGPVTARKIMETCPTLEALRDNCAALP-AKLREKVEPELENVFLYR 246 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 +L ++TD PL+H L+ + L +FL E L Sbjct: 247 ELTRMKTDC-CDQPLDHFALQPMDLDGLRAFLDEYELRGL 285 >gi|255017642|ref|ZP_05289768.1| DNA polymerase I [Listeria monocytogenes FSL F2-515] Length = 316 Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 147/312 (47%), Positives = 200/312 (64%), Gaps = 5/312 (1%) Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 G + II IL +RQL KI+STY + L +K T +VHT ++ T TGRL+S++PNLQ Sbjct: 5 SGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQ 64 Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 NIPI+ + G+KIR+ F+ S P K+ SADYSQ+ELR+LAHI++ L F++ DIH Sbjct: 65 NIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTK 124 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A ++F V E+V MRR AK +NF I+YGIS + L+ L I R EA D+I RYF +P Sbjct: 125 TAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYP 184 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 + EY++ F ++ GYVETI RR + EI S ++R ER A+N PIQGSAADI Sbjct: 185 AVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADII 244 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 ++AMI + + L KL K+LLQ+HDEL+FE PE EI +I+ ME A + L V Sbjct: 245 KKAMILMSERLVSEKLKAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSV 300 Query: 961 PLKVNIKVSNNW 972 PLKV+ + W Sbjct: 301 PLKVDSAFGDTW 312 >gi|326773414|ref|ZP_08232697.1| DNA polymerase I [Actinomyces viscosus C505] gi|326636644|gb|EGE37547.1| DNA polymerase I [Actinomyces viscosus C505] Length = 946 Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 177/517 (34%), Positives = 270/517 (52%), Gaps = 24/517 (4%) Query: 475 VLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533 L G+++ G D L Y+ + S+D+ ++ Q+WL + + Sbjct: 434 ALSARGLTLDGVIADPSLAGYLCRPEQRSYDVETLTQRWLGIDLAAVNEGSAGGDGGSGE 493 Query: 534 SDSQVQEHAIENSNVI--------------LQLWLLLRPKLIVEKLLHVYERLDKPMIDV 579 S S A+ + + L L +L ++ ++ L+ P+ Sbjct: 494 SQSAFDLEALTSQEAVPPSHLASARRAAALLPLQAVLDEQMAARDAAGLFTDLEMPVAAT 553 Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 ++ ME GI +D +L E+ + E Y +G + NLSSPKQL +LF +LK Sbjct: 554 LTVMEDAGIAVDDAVLHARQTELDARVTHAAEGAYAAAGRELNLSSPKQLQAVLFDELKM 613 Query: 640 PSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P KTKTG + T A L + +P ++++LE R K++ T + L I R Sbjct: 614 PKTRKTKTG-YTTDADALAGLYAKTSHPFLEHLLEHRDAIKLRQTV-EGLRKAIQA-DGR 670 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQIELRI 757 +HT + TGRL+S +PNLQNIP + + G +IR AF + + L++ADYSQIE+RI Sbjct: 671 IHTTFQQTIAATGRLSSTDPNLQNIPARHEEGMRIREAFTVGEGYECLMTADYSQIEMRI 730 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 +AH++ L + F + D+HR VAA + G+ +E V+ Q R H K +++ + YG+S F L Sbjct: 731 MAHLSADQALIEAFRSGEDLHRYVAALVHGIEVEDVTAQQRSHVKAMSYGLAYGLSTFGL 790 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 A QL I +EAAD YF RF +H+Y+E R++GY ET+FGRR + ++ S Sbjct: 791 ARQLGIDNAEAADLRNAYFARFGKVHDYLESVVEQARRDGYTETMFGRRRYLPDLTSDNR 850 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 R + ERAA+NAPIQGSAADI ++AMI V +L + L +++LLQIHDEL+ EV E Sbjct: 851 QRREMAERAALNAPIQGSAADIVKKAMIDVDSALREQALTSRILLQIHDELLIEVAPGEA 910 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ M A L VPL V + W+E Sbjct: 911 EAVENLLKEQMGGAA----ELSVPLDVAVGRGRTWRE 943 Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 102/288 (35%), Positives = 156/288 (54%), Gaps = 11/288 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P+ + G NA+ GF +M LL + R +H AV F Sbjct: 25 LLLIDGHSMAFRAFYALPVDNFTTSTGQSTNAVHGFVSMFLSLLDSERP----THVAVAF 80 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D P TFR E Y +YK R + P+ L Q+ L++ +A G+ A+ G+EADDI+AT Sbjct: 81 DLPGGTFRTEEYAEYKGTRDETPQPFLGQVELIQEVLEAMGVTALTAPGYEADDILATLA 140 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 A+ EG V I S D+D Q V+ + VK ++ + V +++G+ PE+ Sbjct: 141 ASAQAEGMEVLICSGDRDSFQTVTERCTVLYPVKGVSTLRRMTPQEVEERYGVTPERYPH 200 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G++ DN+PG+PG+G KTAA L Y L+ ++ +A +IK K +++ ++ + Sbjct: 201 LAALVGETSDNLPGVPGVGPKTAAKWLNLYDGLDGVIAHADQIKGKA-GQSLRDHLDDVV 259 Query: 242 LSRKLVMLRTDVPITI-PLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +R+L L TD+ + I P L L + L ++LEF L R Sbjct: 260 RNRRLNRLLTDLDLGIEPRTDLRLTGADRAGLARVFESLEFRTLHQRA 307 >gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1] Length = 912 Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 166/516 (32%), Positives = 282/516 (54%), Gaps = 17/516 (3%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K V G ++ G D L +Y++ GR S + +++ ++L Sbjct: 404 KVMHDAKRVMRVFDEQGWAVAGAAMDTALAAYLVKPGRRSFALDALSVEYLGRELSPAAA 463 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + +D Q ++ A+ + IL L +L + + ++ P+ +++ Sbjct: 464 AESGQLAFG--ADEQAEQDALMIQARTILDLGEAFGRRLAEVGAVELLRDVELPISALLA 521 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +ME GI D+D L ++ + + + +D G +FNL SPKQL ++ F +L P Sbjct: 522 RMEKAGIAADRDWLDRMDQRFAGAVQQAVKEAHDAVGHEFNLGSPKQLQEVFFGELGLPK 581 Query: 642 GAKTKTGQWKTTAQDLEQINCGDN---PIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 K KTG + T A L + + P+I +L R+ ++++ST + L I R Sbjct: 582 TKKIKTG-YTTDADALAWLATQTDHELPVI--MLRHREQARLRSTV-EGLIKAIAP-GGR 636 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRI 757 +HT ++ TGRL+S +PNLQN+ ++T+ G+ IRR F+ + L++ADYSQIELR+ Sbjct: 637 IHTTFNQTVAATGRLSSTDPNLQNVHVRTEEGRAIRRGFVVGEGFESLLTADYSQIELRV 696 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 +AH+++ L + F + D+H VA+++FGV +V P+MRR K +++ + YG+S F L Sbjct: 697 MAHLSEDEGLIEAFTSGEDLHTTVASQVFGVAKSEVDPEMRRKIKAMSYGLAYGLSAFGL 756 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 + QL I EA + +F RF G+ +Y+++ + R GY ET+ GRR + ++NS Sbjct: 757 SQQLGITPDEARKLMDTFFERFGGVRDYLQRVVDEARATGYTETMLGRRRYLPDLNSDNR 816 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 R + ER A+NAPIQG+AADI + AM+ V ++L KL+++MLLQ+HDE+V EV E Sbjct: 817 QRREMAERMALNAPIQGTAADIVKIAMLRVDEALTKEKLSSRMLLQVHDEIVVEVAPGER 876 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 ++ M A +LR PL V++ +W+ Sbjct: 877 EQVEALVRREMAGA----FHLRAPLDVSVGAGTDWE 908 Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 105/281 (37%), Positives = 150/281 (53%), Gaps = 10/281 (3%) Query: 6 HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L L+DG S YRAF+A P + G NAI GF +ML L++ + +H AV Sbjct: 23 RLLLLDGHSLAYRAFFALPAENFNTTTGQTTNAIYGFTSMLVNTLRDEQP----THLAVA 78 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD T+R+E + +YKANR K P+ Q+ L+ A I + GFEADDIIAT Sbjct: 79 FDVSRKTWRSEQFTEYKANRSKAPDEFKGQVELIGEMLDAMSITRFAVDGFEADDIIATL 138 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMV 180 AE EGF V I++ D+D QLVS T LY T V E + V +K+G+ P + Sbjct: 139 ATQAEAEGFEVLIVTGDRDSFQLVSDHVTVLYPTKGVSELTRFTPAKVEEKYGLTPRQYP 198 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 AL GD DN+PGIPG+G KTAA + ++G+ ++ + +K K + + E+ E+ Sbjct: 199 DFAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVAEVKGKV-GDKLREHLESV 257 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 +L+R+L L DV + + L + L + ALEF Sbjct: 258 KLNRRLTELVRDVELPAGPDGLKRIPYDRQALSVIMDALEF 298 >gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] Length = 879 Score = 285 bits (729), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 181/516 (35%), Positives = 287/516 (55%), Gaps = 22/516 (4%) Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517 HF+ IGHN+KYD ++ + + ++ + + D M+++++ + S R + D +A + Y Sbjct: 378 HFI-IGHNLKYDFAIIENNFKLTPPKKYADTMILAWLYNPSLRVNMD--DLALRLFDYKT 434 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 K + + +A E++ + L+ +L L LL + + I Sbjct: 435 LHFESVVKKGENFASVELEKACNYAAEDAYITLRFYLYFLKNL-EPNLLKLGFESEFNFI 493 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 +V+ +ME +GI+++ L+ + E K + L E IY L +KFNL+SPKQ+GD+LF KL Sbjct: 494 EVLRKMEQSGIKLETQKLQNLMQEFEKEIKFLSEEIYTLCDDKFNLNSPKQVGDVLFEKL 553 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696 PS KTKTG + T + LE + +P++ IL +R+L+K+ STY + L + Sbjct: 554 NLPSAKKTKTG-YSTDEKVLENL-VDKHPVVSKILAYRELAKLYSTYCEPLLKLALKDEN 611 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 R+++ + T TGRL+S EPNLQNIP + + FI+ IS DYSQIELR Sbjct: 612 SRIYSSFLQTGTATGRLSSKEPNLQNIPAHGQYAKDYKSCFIAEDGFSFISLDYSQIELR 671 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +LAH +K L + F+N DIH A IFG N + + R AK+INF +IYG+ Sbjct: 672 MLAHFSKDEKLLEAFKNDEDIHARTAIMIFGEN----NYETRSVAKSINFGLIYGMGYKT 727 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ L+I S A +YI++YF F I Y E+ KN + NGY+ T+ GR+ ++D N+ Sbjct: 728 LSQNLKIEASLAKEYIEKYFANFTSIKSYFERVKNEAKINGYISTLSGRKRYFDFANAKP 787 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 + + ER +IN+ +QGSAADI + AM+ ++K L+ K +++LQIHDEL+FEV +E Sbjct: 788 MQVA-MYERESINSILQGSAADIIKLAMLELYKELDADK---RLILQIHDELIFEVKDEL 843 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + ME + L+V LK + ++ NW Sbjct: 844 CEKFEKRARDIMENI----VKLKVNLKTSSSIAKNW 875 Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 104/329 (31%), Positives = 165/329 (50%), Gaps = 16/329 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R FYA + G P ++GF N ++ L + E + + D Sbjct: 4 LTIIDTFGFFFRLFYALKNF-KNSKGEPSGMVSGFANFIYSL----KNEYKSDYIIFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EI P+YK NR P LL Q+P+ + G +I + +EADDIIA+ Sbjct: 59 SKGKTFRSEIDPNYKTNRTPPPPELLAQIPICIEMIEKMGFVSISKEYYEADDIIASVVK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 + V II+ DKDL QL+ +Y + + D ++K+G+ P ++ AL Sbjct: 119 SCNDKDIFVRIITQDKDLYQLIKDGKVSIYSPISKNDYDEAACLEKYGVKPSQIKDFLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ GIG K A LL E+GN+E I N S ++ ++ + +LE E A LS+K Sbjct: 179 CGDSADNIPGVKGIGAKGAKNLLDEFGNIEEIYENLSFVRNERSKNLLLEGKENAFLSKK 238 Query: 246 LVMLRTDVPITIPLEHLILEDCNGP--RLISFLKALEFTKLINRVATTYDCDAANI---E 300 L L D+ + +E + P R++ +L+ E L+ ++ N+ Sbjct: 239 LASLYEDLDLEDLIEKSVYTQ-EEPLLRVLDYLERFELNSLLKKLKANPQNRNQNLGFKA 297 Query: 301 PVVLDINTTENKGIAIETE----IDRDTT 325 ++LD NT +K ++E+E D +TT Sbjct: 298 TLILDENTLFDKLESLESESIIAFDTETT 326 >gi|305681930|ref|ZP_07404734.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC 14266] gi|305658403|gb|EFM47906.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC 14266] Length = 885 Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 183/522 (35%), Positives = 296/522 (56%), Gaps = 35/522 (6%) Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K H+ K +L GI++ G D L +Y+L+ G+ ++D+ + Q+ L T EI + Sbjct: 381 KFLHDAKTTYHMLAGRGITLGGIAHDTALAAYLLNPGQRTYDLKTTYQRHLHRTL-EITE 439 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR-------PKLIVEKLLHVYERLDKP 575 + + S+ +D I N+N ++ + KL L +Y L+ P Sbjct: 440 TGQLSL-LD-----------ITNTNTLITAAAAILELAATLPTKLATINELELYLDLELP 487 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY-DLSGE-KFNLSSPKQLGDIL 633 + ++++ME TGI +D L++ + NL++ EE ++G+ L+SPKQL +L Sbjct: 488 LTTILAEMEATGIAVDIPTLEE-QLDTFTNLVTQEETAARTIAGDPNLLLTSPKQLQVVL 546 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP--IIKNILEWRQLSKIKSTYADSLPNH 691 F L P K KTG + T A+++E + ++P + ++L R+ K+K+T + L Sbjct: 547 FETLGLPKTKKIKTG-YSTAAKEIETL-AANHPHEFLNHLLAHREYQKMKTTL-EGLIKA 603 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADY 750 + R+HT + T TGRL+S +PNLQNIPI+T G+KIR AF + + L++ADY Sbjct: 604 VGDD-GRIHTTFQQTMTSTGRLSSTDPNLQNIPIRTPAGKKIRSAFTVGTNYETLLTADY 662 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 SQIE+R++AH++ L + N D+H V A++F V V+P++RR K +++ ++Y Sbjct: 663 SQIEMRVMAHLSNDPGLITAYNNGEDLHNYVGAKVFDVPPSGVTPELRRKVKALSYGLVY 722 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 G+S F L+ QL IP EA ++ YFHRF G+ Y++ R++GY T+F RR + Sbjct: 723 GLSAFGLSQQLNIPAGEAKQIMENYFHRFGGVKHYLDTVVTQARKDGYTATLFDRRRYLP 782 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 E+ S + R ERAA+NAPIQG+AADI + AM+ +H L+ +++LLQ+HDELV Sbjct: 783 ELTSTNRATRENAERAALNAPIQGTAADIIKIAMLRIHHELKKTNAKSRVLLQVHDELVV 842 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E+ E+TT ++I H M+ A I L+VPL+V+ NW Sbjct: 843 EIAPGELTTVKKLIEHEMDNA----ITLKVPLEVSTGHGPNW 880 Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 109/301 (36%), Positives = 157/301 (52%), Gaps = 15/301 (4%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 ++N L L+DG S +RAFYA P G NAI GF +ML LL + + +H Sbjct: 4 EKNRLMLIDGHSMAFRAFYALPTEKFTTSTGQATNAIYGFLSMLATLLHDEQP----THV 59 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 AV FD TFR E++PDYKA R + P + Q+P+++ A GI IE +EADDII Sbjct: 60 AVAFDVGRTTFRTEMFPDYKAQRDETPPEFISQIPILKNLLTALGITTIEKPNYEADDII 119 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPE 177 AT A+ GF I++ D+D +QLV+ TT + +K + + V K+G+ PE Sbjct: 120 ATLATTAQPLGFETLIVTGDRDSLQLVNNTTTVLYPMKGVSVIHRFTPQAVQDKYGLTPE 179 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 + AL GD DN+P IP +G KTA + ++GNL N+L NA IK N+ E Sbjct: 180 QYPDFAALRGDPSDNLPSIPKVGEKTATKWIVQHGNLTNLLNNADTIK-GVVGTNLRERI 238 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-----TKLINRVATTY 292 + +L+R+L + ++ +T L L+ N L LEF TK++ T Sbjct: 239 DQVKLNRQLTEMVKNLDLTHTPPELKLQPVNTKTLTEDFNNLEFGTTLRTKILKARGVTV 298 Query: 293 D 293 D Sbjct: 299 D 299 >gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24] gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24] Length = 955 Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 177/552 (32%), Positives = 293/552 (53%), Gaps = 25/552 (4%) Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG 485 ++IDLS QD+ +N L + + K+ H K L G+ + G Sbjct: 419 AVYIDLS---GQDAEAENVLAA--------WLRDPEAPKVMHGFKAALKALSARGLELEG 467 Query: 486 F-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAI 543 +D + Y++ R ++++A +AQ L+ + K+ + + D DS + Sbjct: 468 VVDDTSISGYLIQPDRRTYELAELAQHHLNIEISTAVAKAGQLELSFDG-DDSAAAGELV 526 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 + V+ L +L K + L+ P+ V++ ME+ GI ID + + A+++ Sbjct: 527 HAAAVVHALSRYFEAELKERKAEELLSTLELPVSQVLADMELAGIAIDMQRMDEQLADLA 586 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI--N 661 K + + +E + G + NL SPKQL +LF +L+ P K K+G + T A L+ + Sbjct: 587 KVIDNAQELAFAAIGHEVNLGSPKQLQTVLFDELQLPKTKKIKSG-YTTDAASLKNLLEK 645 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 G +++ ++ R+ SK++ +SL + + R+HT Y+ TGR++S PNLQ Sbjct: 646 TGHEFLVQ-LMAHRESSKLRQML-ESLKKSVAE-DGRIHTTYAQNVAATGRISSNNPNLQ 702 Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 NIPI+++ G+++R F+ S + L+SADYSQIE+RI+AH++ L Q + + D+HR Sbjct: 703 NIPIRSEEGRRVRGIFVVSEGYECLLSADYSQIEMRIMAHLSGDAGLIQAYRDGEDLHRF 762 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 V + IF V ++V+ MR K +++ + YG++ F L+ QL I EA +K YF RF Sbjct: 763 VGSNIFHVPTDQVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLMKEYFDRFG 822 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 + +Y+ + R +G+ TI GRR + ++ S +R ER A+N+PIQGSAADI Sbjct: 823 AVRDYLRGVVDQARIDGFTATIEGRRRYLPDLTSTDRQLRENAERIALNSPIQGSAADII 882 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 +RAM+ VH L+ L ++MLLQ+HDELV EV E +++ M A +L V Sbjct: 883 KRAMLGVHAELKAQGLKSRMLLQVHDELVLEVAAGEREAVEKLVTEQMGSAA----DLSV 938 Query: 961 PLKVNIKVSNNW 972 PL V I V +W Sbjct: 939 PLDVQIGVGPSW 950 Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 101/313 (32%), Positives = 158/313 (50%), Gaps = 24/313 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAF+A P G NAI GF +ML L+ KE +H AV F Sbjct: 68 LLVLDGHSMAFRAFFALPADKFSTAAGQHTNAIHGFTSMLINLI----KEQKPTHVAVAF 123 Query: 66 DYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D T R Y +YK R + P + Q+ L+ A+GI I++ G+EADD++AT Sbjct: 124 DVSDETTHRKAEYSEYKGGRNETPREMSGQIDLIDKVMGAWGIKTIKMPGYEADDVLATL 183 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 + EK G+ V +++ D+D QL++ P + D ++D + +K+ + P Sbjct: 184 AAMGEKAGYEVLLVTGDRDAFQLITDNVFVLYPRKGVSDI---PRLDAPAIQEKYFVSPA 240 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENIL 234 + L AL G+S DN+PG+PG+G KTAA + YG LE +L + +I K REN+ Sbjct: 241 QYSDLAALVGESADNLPGVPGVGPKTAAKWINLYGGLEGVLEHLDKIGGKVGDSLRENV- 299 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC 294 + + +R+L L TD+ + + L+ L + L LEF + R+ Y Sbjct: 300 ---DAVKRNRRLNRLHTDLELPVTLDDLADPRPDQAALEQLFDELEFKTIRTRLFALYGA 356 Query: 295 DAANI-EPVVLDI 306 + ++ E LDI Sbjct: 357 EEVDLAERESLDI 369 >gi|99035970|ref|ZP_01315014.1| hypothetical protein Wendoof_01000150 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 354 Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 149/306 (48%), Positives = 205/306 (66%), Gaps = 10/306 (3%) Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 I IL WR LSK+K TY D+L ++ R+HT +S +T TGRL+S PNLQNIPI+ Sbjct: 38 IASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLSSSNPNLQNIPIR 97 Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF 786 ++ G IR+AFI+P K+ISADYSQIELR+LAH+A + + F N DIH + A ++F Sbjct: 98 SEEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVF 157 Query: 787 GVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 GV +++ Q+RR AK+INF IIYGISPF LA +L I +EAA+YI YF +P I Y+ Sbjct: 158 GV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAEAAEYINYYFSCYPEIKAYM 215 Query: 847 EKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMIS 906 EK + R +GYVET+FGRR +IN+ IR ERAAINAP+QG+AADI +RA I Sbjct: 216 EKAVSIARLHGYVETLFGRRCFVRDINNTIPYIRQFAERAAINAPLQGTAADIIKRATIQ 275 Query: 907 VHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 + L+ K++LQ+HDEL+ EV +E++ +++I ME A I + +PL+V I Sbjct: 276 LFDQLK----VGKIILQVHDELLVEVEDEKVQETAKLIKDIMENA----IEISIPLEVEI 327 Query: 967 KVSNNW 972 K+ +NW Sbjct: 328 KIGDNW 333 >gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] Length = 904 Score = 284 bits (726), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 180/537 (33%), Positives = 290/537 (54%), Gaps = 18/537 (3%) Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGIS-MRGFE-DIMLMSYVLDSGRS 501 T+T E + L + + K H K+ L G + + G D L +Y+ G+ Sbjct: 373 TMTPEDVRALDGWLADPAVPKAFHEAKWATHALRGGGFAEIAGVTTDTGLAAYIARPGQR 432 Query: 502 SHDIASIAQKWLSYTRKEIL----KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 S ++ +A L Y R+++ ++ S+ D + + + +I + I +L L Sbjct: 433 SFNLPDLA---LRYLRRQLGPEDGGEKQLSLLDDSTGEDKEADDSITEAAAIRELGGALD 489 Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617 L + ++ P+ V+++ME GI +DQD L + A+ + + E+ Y + Sbjct: 490 DVLDKAGSADLLRTMELPLTFVLARMEEAGIAVDQDGLAGLHADFAARVKQAAESAYSVI 549 Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQ 676 G++ NL SPKQL +LF +L P KTKT T A L+ + ++P + +LE R Sbjct: 550 GKEINLGSPKQLQVVLFDELGMPKTKKTKT-GHTTDADALQWLFEKTEHPFLLYLLEHRD 608 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 +++ +T A L I R+HT + TGRL+S +PNLQNIP++TD ++IR Sbjct: 609 ATRLMTT-AQGLIKAIGP-DGRIHTTFRQDVAATGRLSSTDPNLQNIPVRTDEARRIRGV 666 Query: 737 FI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F+ + L++ADYSQIE+RI+AH++ L + F D+H VA+ FGV I++V Sbjct: 667 FVVGEGHEALMTADYSQIEMRIMAHLSGDDGLIEAFRTGEDLHNFVASRAFGVPIDEVGA 726 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 ++RR K +++ + YG+S F LA+QL + EA + YF RF G+ +Y+ R+ Sbjct: 727 ELRRRVKAMSYGLAYGLSAFGLASQLGVSGEEAKAQMDAYFARFGGVRDYLHAVVEEARR 786 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 GY ET+FGRR + ++ S R + ERAA+NAPIQGSAADI + AMI V ++L + + Sbjct: 787 KGYTETLFGRRRYLPDLTSDNQQQRAVAERAALNAPIQGSAADIIKVAMIHVAEALAERE 846 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + ++MLLQ+HDELV EV + E + ++ M A I L VP+ V++ NW Sbjct: 847 MRSRMLLQVHDELVLEVADGEREELAALVSEQMGSA----IELLVPMDVSVGFGANW 899 Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 104/300 (34%), Positives = 162/300 (54%), Gaps = 14/300 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P + R +GL NA+ GF +ML LL++ +H AV F Sbjct: 8 LLLLDGHSLAFRAFYALPEENFRTAEGLTTNAVYGFVSMLINLLRDEDP----THVAVAF 63 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+++YP+YKA R K PE Q+ L++ A GI +G+EADDIIATY Sbjct: 64 DISRKTFRSQMYPEYKATRSKSPESFPGQVDLIKEVLGALGIVWEAHEGYEADDIIATYA 123 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKI---DIEHVIKKWGIPPEKMVC 181 +++G+ V I++ D+D +QLV+P T LY + E V +K+G+ P + Sbjct: 124 TQGQQQGYQVLIMTGDRDALQLVTPDITVLYPNRGVSDLIRYTPEQVEEKYGLSPAQYPD 183 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+P IPG+G KTA+ ++ Y +L +L A + K + + ++ + R Sbjct: 184 FAALRGDPSDNLPKIPGVGEKTASSWVKSYHSLAELLERADEVTGKT-GQALRDHLDQVR 242 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEP 301 +R+L L D+ + + L + + ++ + LEF L +R+ T +EP Sbjct: 243 RNRQLTELVRDMEVDHAVADLTRQQWDRDQVHALFDRLEFRVLRDRLFATLGA----VEP 298 >gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] Length = 879 Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 175/517 (33%), Positives = 290/517 (56%), Gaps = 20/517 (3%) Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK 518 HF+ IGHN+KYD K++ + +G+++ + + D M++++ L + S ++ +A + +Y Sbjct: 378 HFV-IGHNLKYDFKIIQNNFGLNLPQKYADTMILAW-LKNPSSRVNMDDLALRLFNYETL 435 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 K + + ++A E++ + L+ +L L LL + + + I Sbjct: 436 HFESLVKKGENFASVELEKACKYAAEDAYITLRFYLDFLKNLET-PLLELAKNCEFDFIK 494 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 ++ ME GI+++ + L+ + + + +L E IY L ++FNL+SPKQ+GDILF KLK Sbjct: 495 IIMMMEENGIKLNTNALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKLK 554 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQ 697 PSG K KTG +T + + I +P+I IL++R+L+K+ STY + L + + Sbjct: 555 LPSGKKGKTGY--STDEKVLNILLDKHPVITKILDYRELAKLYSTYCEPLLKLALKDKNS 612 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 R+++ + T TGRL+S +PNLQNIP + + F++ IS DYSQIELR+ Sbjct: 613 RIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRM 672 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 LAH ++ L F N DIH A IFG + + + R AK+INF +IYG+ L Sbjct: 673 LAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTL 728 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 + L+I A YI++YF F I +Y E KN +QNG++ T+ GR+ ++D N+ Sbjct: 729 SQNLKIEAHLAKSYIEKYFENFTSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKPM 788 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 I + ER +IN+ +QGSAAD+ + AM+ ++K L + K K++LQIHDEL+FEV ++ Sbjct: 789 QIA-MYERESINSILQGSAADVIKLAMLEINKELNEDK---KLILQIHDELIFEVKDDLC 844 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME + L+V LK + ++ NW + Sbjct: 845 ENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877 Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 104/331 (31%), Positives = 164/331 (49%), Gaps = 26/331 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R +YA + G I+GF N ++ L + E + + D Sbjct: 4 LTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEYKSDYIVFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EI P+YK NR P LL Q+P+ + G ++ +G+EADDIIA++ Sbjct: 59 SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISVSQEGYEADDIIASFVK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 E V II+ DKDL QL+ T +Y + + D ++K+G+ P ++ AL Sbjct: 119 TCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPNQIRDFLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ GIG K A LL E+G++E I N + I+ ++ R +LE E A LS+K Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLIRNERSRNLLLEGKENAFLSKK 238 Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 L L ++ + T P E +L +++ L+ E L+ ++ D N Sbjct: 239 LASLYDNLEVQNLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292 Query: 299 I---EPVVLDINTTENKGIAIETEIDRDTTI 326 + +V D ENK I +D+++ I Sbjct: 293 LGFKATLVQD----ENKLFEILNTLDKESII 319 >gi|323698562|ref|ZP_08110474.1| DNA polymerase I [Desulfovibrio sp. ND132] gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132] Length = 888 Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 170/487 (34%), Positives = 259/487 (53%), Gaps = 19/487 (3%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L +Y+LD ++ A + Q R E ++ + H Sbjct: 419 DLSLAAYLLDPESRNYTWARLRQSMFQDGRPEFAEAARGL-------------HPHSQGL 465 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 L +R ++ L + L+ P+I V+ ME GI ID + +++ L Sbjct: 466 AALAYMTGIRGQVEGAHLNTLMRELEIPLIPVLVAMERAGISIDDAAFQAFLNDVNAQLD 525 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 L +I +GE+FN+ S +QL +LF +L +G+KT TG T Q LE+I +PI Sbjct: 526 ELTRSIIGYAGEEFNIRSSQQLAVVLFDQLGIKAGSKTSTGLRSTANQVLEKIR-DQHPI 584 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 + +LE+R L K++STY + LP + + R+HT ++ ST TGRL+S +PNLQNIPI+ Sbjct: 585 VDAVLEFRMLEKLRSTYLEPLPKMVGE-DGRLHTHFNQLSTATGRLSSSQPNLQNIPIRG 643 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 G ++R F + L +ADYSQIELR+LAH +K L F + DIH AA I Sbjct: 644 VHGPRMRACFNAAEGNMLAAADYSQIELRVLAHFSKDPELIDAFRHDEDIHARTAALIHD 703 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 +I V+P RR AKTINF +IYG+ +LA +L+I ++EA ++ ++YF + + Y + Sbjct: 704 KDISAVTPDERRGAKTINFGLIYGMGVQKLARELQIKQTEAQEFTEKYFAKMATLKAYYD 763 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 +G+V T+ GRR E++S + + R A+N IQGSAADI + AM+ Sbjct: 764 TVVKDAETHGFVTTLAGRRRLLPELHSRNNQLSAQARRQAVNTVIQGSAADIIKMAMVQA 823 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 HK +L +++LQ+HDEL+ E PE I A ++ M+ L VPLKV++ Sbjct: 824 HKDKRLRELGAQLILQVHDELIIEAPEANIKEAGGRLLEIMQTVA----KLDVPLKVDMG 879 Query: 968 VSNNWQE 974 V NW E Sbjct: 880 VGKNWAE 886 Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 91/234 (38%), Positives = 122/234 (52%), Gaps = 25/234 (10%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+DG++ +YRAFYA LSR DG P NAI N + ++L N K+ H + D Sbjct: 14 LYLIDGTALLYRAFYARADLSRS-DGFPTNAI----NTVMRVLMNLLKDEDPLHVGFVMD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT- 125 TFRN +Y YKANRP +PE L+ Q+ VR GIP + +G EADD I + Sbjct: 69 GKGPTFRNALYDGYKANRPAMPEPLVEQVEPVRRGVGLLGIPLLVSEGVEADDCICSLAD 128 Query: 126 -YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV--------KEEKIDIEHVIKKWGIPP 176 Y AE+ V I++TDKD+ Q CL D V KE ++ + G+ P Sbjct: 129 RYKAER---PVIILATDKDIKQ------CLDDQVVMVSQMGRKETIHTLDSFREAEGMEP 179 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYG-NLENILINASRIKQKKR 229 QA+ GDS DNIPGIPG+G TA + G LE + N + + K R Sbjct: 180 ATWPDFQAVIGDSADNIPGIPGVGPVTARKIFAATGPTLEELRDNLASLPDKLR 233 >gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10] gi|332287087|ref|YP_004421988.1| DNA polymerase I [Chlamydophila psittaci 6BC] gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1] gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC] gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10] gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC] Length = 869 Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 187/530 (35%), Positives = 306/530 (57%), Gaps = 14/530 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG-RSSHDI 505 ++++ LK FF+ + G+NIK D L GI + D+ L ++++ G + S+ Sbjct: 350 DVITPLKDFFKRKDTEFYGYNIKRDHHALKNAGIHIDNITLDLALAEHLINGGAKISYQT 409 Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 + + K + + S+PI K S ++ E+ E + + ++ L +L ++ + Sbjct: 410 LLVDHGLMESAGKYGKEWGQLSLPILK-SPAKPAEYFGEFVSHLPKIKKSLLEELKIKGV 468 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 ++ ++ P+ +V+ +E G+ +D + L+++ +S+ L L ++IY L+G FN+ S Sbjct: 469 EDLFFNMEMPLENVLFTIERNGMPLDVEDLQELERTLSEELAILTDDIYTLAGASFNIKS 528 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQL D+L+ KL K ++ T A+ LE + G++ I++ IL +R + K+ STY Sbjct: 529 PKQLSDVLYNKLGLTPIDKARS----TKAEVLEAL-LGEHEIVEKILAFRAIEKLLSTYV 583 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 +LP I+ T R+H ++ T+TGRLA +PNLQNIPI+++ G+ +R+AF + Sbjct: 584 KALPRQIDPHTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFRDTRQNNY 643 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 +SADYSQIELR LAH+++ L FE+ D+H A+++F V +E+V+ Q R AKT+ Sbjct: 644 FLSADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEEVTKQQRMQAKTV 703 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF IIYG + L+ L+I SEA I YF R+P + +I++T + +N V+T+ G Sbjct: 704 NFGIIYGQQAYGLSKILKISVSEAQKLIDAYFDRYPAVARFIDETISQACENLRVKTLLG 763 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 R D +S R + R A+N IQGSAA++ + AM+ + +LE KL ++MLLQI Sbjct: 764 RERIIDNWTEFSNS-RAASGRLAVNTRIQGSAAELIKLAMLQLADALEKRKLRSRMLLQI 822 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL+FEVPEEE ++ ME A + L VPL VNI + NW E Sbjct: 823 HDELIFEVPEEEKEEVQTLVRDIMESAMI----LSVPLVVNILIGKNWAE 868 Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 106/322 (32%), Positives = 167/322 (51%), Gaps = 23/322 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 +F++D S F++RA++A P + + G A+ GF + KL+ KE +H +FD Sbjct: 4 IFILDASGFVFRAYFALPDM-KNSSGEGTQAVFGFIRSINKLI----KEFSPNHMVAVFD 58 Query: 67 YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P R EIY DYK +R K E L Q+P+V+ G+ +EI+ EADD+IA+ T Sbjct: 59 GPNNKQSRREIYADYKIHREKKDENLYQQIPIVKEYCNLLGLRYLEIEDVEADDVIASIT 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCLQA 184 A EG+ V + + DKDL+QLV P + K++ ID V+ +G+PP ++ A Sbjct: 119 KRAVAEGYEVCLCTADKDLLQLVGPNVVALNPWKDKPPIDENGVVDIYGVPPSRIADYLA 178 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD+ DNIPG+ G G K A LLQ+Y ++E IL + + + I E + LS+ Sbjct: 179 LVGDTSDNIPGVSGCGPKKATALLQKYHSVEGILEHLDELTGSTHK-MISEQKDVLLLSK 237 Query: 245 KLVMLRTDVPITI-------PLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 L +L ++P+ + PL + E+ N +F F L+ V T + D Sbjct: 238 DLAVLNNNIPLPMSISGFEFPLHQVRQEEIN-----TFYMRHGFKTLVQPVEETSNIDVE 292 Query: 298 NI---EPVVLDINTTENKGIAI 316 I +P+V ++T + K +A Sbjct: 293 IINSSQPLVRVLSTLQGKSVAF 314 >gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116] gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116] gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1] gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni 327] Length = 879 Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 177/518 (34%), Positives = 291/518 (56%), Gaps = 22/518 (4%) Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517 HF+ IGHN+KYD K++ + +G+++ + + D M+++++ + S R + D +A + +Y Sbjct: 378 HFV-IGHNLKYDFKIIQNNFGLNLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 K + + ++A E++ + L+ +L L LL + + + I Sbjct: 435 LHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLET-PLLELAKNCEFDFI 493 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 ++ ME GI++D + L+ + + + +L E IY L ++FNL+SPKQ+GDILF KL Sbjct: 494 KIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKL 553 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696 K PSG K KTG + T + L + +P+I IL++R+L+K+ STY + L + + Sbjct: 554 KLPSGKKGKTG-YSTDEKVLNAL-LDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKN 611 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 R+++ + T TGRL+S +PNLQNIP + + F++ IS DYSQIELR Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELR 671 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +LAH ++ L F N DIH A IFG + + + R AK+INF +IYG+ Sbjct: 672 MLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ L+I A YI++YF F I +Y E KN +QNG++ T+ GR+ ++D N+ Sbjct: 728 LSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVKNKAKQNGFITTLSGRKRYFDFENAKP 787 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 I + ER +IN+ +QGSAAD+ + AM+ ++K L + K K++LQIHDEL+FEV ++ Sbjct: 788 MQIA-MYERESINSILQGSAADVIKLAMLEINKELNEDK---KLILQIHDELIFEVKDDL 843 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME + L+V LK + ++ NW + Sbjct: 844 CENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/328 (31%), Positives = 162/328 (49%), Gaps = 20/328 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R +YA + G I+GF N ++ L + E + + D Sbjct: 4 LTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEHKSDYIVFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EI P+YK NR P LL Q+P+ + G ++ +G+EADDIIA++ Sbjct: 59 SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSQEGYEADDIIASFVR 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 E V II+ DKDL QL+ T +Y + + D ++K+G+ P ++ AL Sbjct: 119 TCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPHQIRDFLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ GIG K A LL E+G++E I N + ++ ++ R +LE E A LS+K Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLSKK 238 Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 L L ++ + T P E +L +++ L+ E L+ ++ D N Sbjct: 239 LASLYENLEVQDLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTI 326 + I ENK I +D+++ I Sbjct: 293 LGFKATLIQ-DENKLFEILNTLDKESII 319 >gi|257068663|ref|YP_003154918.1| DNA polymerase I [Brachybacterium faecium DSM 4810] gi|256559481|gb|ACU85328.1| DNA polymerase I [Brachybacterium faecium DSM 4810] Length = 904 Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 155/414 (37%), Positives = 235/414 (56%), Gaps = 14/414 (3%) Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 + + L++P+ V+ M GI ID+ L + E + + + GE+ NL+SPK Sbjct: 495 ILDELEQPLQRVLETMHERGIAIDEQALAALREEFEGFVAQAKREAGAIVGEEVNLASPK 554 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP------IIKNILEWRQLSKIK 681 QL +LF L P+ K +G T A+ L + +P + +L +R++SK+ Sbjct: 555 QLQVVLFETLALPTTRKISSGH-STDAESLTDLQESLDPESSGHQFLSWLLRFREMSKL- 612 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 + Y L ++ + RVHT + + TGRLAS EPNLQNIP++T GQ+IR AF++ Sbjct: 613 TGYLVGLDKVVDAGS-RVHTTFQQTAAATGRLASTEPNLQNIPVRTAEGQRIRDAFVAGE 671 Query: 742 T-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 + L++ADYSQIE+RI+AH+++ L + F + D+H VA+ +FGV+ + V P MR Sbjct: 672 GFETLLTADYSQIEMRIMAHLSEDAGLIEAFNSGEDLHNFVASRVFGVSPDAVDPAMRSK 731 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 K +++ + YG+S F L+ QLRI R+EA YF RF G+ +Y+ T R GY E Sbjct: 732 TKAVSYGLAYGLSAFGLSRQLRISRAEATALRDGYFERFGGVRDYLHHTVETARTTGYTE 791 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 TI GRR + ++ S R ER A+N+PIQGSAADI + AM+ V + +L+++M Sbjct: 792 TILGRRRYLPDLTSDNRQRRENAERVALNSPIQGSAADIIKLAMLRVESRMRAAELSSRM 851 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LLQ+HDELV EV E+ +I+ M A L VPL V + + W+E Sbjct: 852 LLQVHDELVVEVAAGELDQVREIVEEGMGSAY----QLSVPLDVGVGIGRTWRE 901 Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/289 (32%), Positives = 146/289 (50%), Gaps = 10/289 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 + + L+DG + +RAF+A P G NA+ GF ML ++ + R +H A Sbjct: 8 DQRILLIDGHAMAFRAFFALPADGFSDGRGQATNAVYGFTRMLINVVASERP----THVA 63 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD P TFR+ IY YK R + P Q+ L+ A G+ + + +EADDIIA Sbjct: 64 VAFDLPGGTFRDRIYDQYKGGRDETPPAFHGQIDLIMQVLDALGVRWLTYEDYEADDIIA 123 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178 T AE G I+S+D+D +QLV L +K ++ V +K+GIPPE+ Sbjct: 124 TLATRAEAAGDEALIVSSDRDAIQLVGAKVTLLQPIKGVTEMRRMTPAAVEEKYGIPPER 183 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 L AL G++ DN+PG+PG+G KTAA L +YG+L ++ +A IK K +++ ++ E Sbjct: 184 YPDLAALVGEAADNLPGVPGVGPKTAAKWLTQYGDLPGLIAHAGEIKGKA-GQSLRDHLE 242 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 +R + T + + H L + R++ L F I R Sbjct: 243 DVERNRLMNAAYTTLDLPEDPAHYSLGGGDRARVLEVFDDLAFGDTIRR 291 >gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S] gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S] Length = 912 Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 178/511 (34%), Positives = 288/511 (56%), Gaps = 12/511 (2%) Query: 467 HNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRK--EILKS 523 H K L G + G D L +Y++ G+ S ++ ++ ++L + E + Sbjct: 404 HEAKRAMHALRGRGWMLAGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRVEESGQQ 463 Query: 524 RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 + S + + +D++ E I S + L L +L + + ++ P+++V++ + Sbjct: 464 QLSLLDDEDAADAEAAEGEILRSRAVRDLAAALDTELADIEATGLLADMELPLLEVLANL 523 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E TGI +D L + + + + E Y + G++ NL SPKQL +LF +L P Sbjct: 524 ESTGIAVDTTHLHDLQSAFAARVAEAAEAAYAVIGKQINLGSPKQLQVVLFDELDMPKTK 583 Query: 644 KTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 KTKT + T A L+ + +P ++++LE R +++K T D L + + R+HT Sbjct: 584 KTKT-GYTTDADALQSLFEKTQHPFLEHLLEHRDATRLKVT-VDGLLKTVAE-DGRIHTT 640 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHI 761 ++ TGRL+S EPNLQNIP++TD G++IR F+ + L++ADYSQIE+RI+AH+ Sbjct: 641 FNQTVAATGRLSSTEPNLQNIPVRTDAGRQIRDGFVVGEGYETLLTADYSQIEMRIMAHL 700 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 + L + F D+H V + FGV IE+V+P++RR K +++ + YG+S F LA QL Sbjct: 701 SGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQL 760 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 +I EA + YF RF G+ +Y+ + R+ GY ET+FGRR + ++NS R Sbjct: 761 KISTEEARQQMDAYFARFGGVRDYLHEVVEQARKVGYTETLFGRRRYLPDLNSDNRQRRE 820 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 + ERAA+NAPIQG+AADI + AMI V ++L + LA++MLLQ+HDELV EV E Sbjct: 821 VAERAALNAPIQGTAADIIKVAMIDVQRALREAGLASRMLLQVHDELVLEVAAGERERVE 880 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 Q++ M A I+L VPL+V++ +W Sbjct: 881 QLVREKMAAA----IDLSVPLEVSVGTGRSW 907 Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 106/296 (35%), Positives = 161/296 (54%), Gaps = 22/296 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + K G NA+ GF +ML LL++ + +H A F Sbjct: 25 LMLLDGHSLAYRAFFALPAENFKTQSGQATNAVYGFTSMLINLLRDEQP----THVAAAF 80 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E +P+YKANR K P+ Q+ + + A GIP + I+GFEADD+IAT T Sbjct: 81 DVSRQTFRAEAFPEYKANRSKTPDEFKGQVEITKDVLAAMGIPVMAIEGFEADDVIATLT 140 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 A G+ V +++ D+D +QLV+ P + D + +E +K+G+ P++ Sbjct: 141 TQATALGYRVLVVTGDRDSLQLVTDDVTVLYPRKGVSDLARFTPAAVE---EKYGLTPQQ 197 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILE 235 AL GD DN+PGIPG+G KTAA ++EYG+LEN++ + +++ K R N+ Sbjct: 198 YPDYAALRGDPSDNLPGIPGVGEKTAAKWIREYGSLENLVNDVDKVRGKVGDALRANV-- 255 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 + L+R L + DV + + L L + R+ + LEF L +R+ T Sbjct: 256 --NSVLLNRHLTEMVRDVAVPYTPDQLALAPWDRERIHALFDDLEFKVLRDRLFAT 309 >gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028] gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028] Length = 861 Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 170/493 (34%), Positives = 276/493 (55%), Gaps = 23/493 (4%) Query: 489 IMLMSY--VLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDS---QVQEHAI 543 + + SY VL+ GR D++ A+ + +L + + +++I D ++ H Sbjct: 378 VYVTSYKSVLEQGR--LDLSGCAEIFDIELAAYLLSPEERNYSLERIRDGLGDEIDVHRE 435 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID----QDLLKQVS 599 + +L + LL +L +LL + + L+ P+ +V+ +M+ GI+ID D L V Sbjct: 436 NHGQAVLAVGRLLHARLAGSELLGLLQDLELPLTEVLVRMQKRGIRIDAARFHDFLGMVQ 495 Query: 600 AEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQ 659 AE+ + L I++ +GE+FN+ S +QL ++LF++L KT G T++ LE Sbjct: 496 AELDR----LTRTIHEQAGEEFNIRSSQQLAEVLFSRLGLACKQKTPGGAQSTSSSVLEG 551 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + ++PI+ ++LE+R K++STY + +P +K R+HT ++ +T TGRL+S PN Sbjct: 552 L-AAEHPIVADVLEFRMYEKLRSTYLEPMPQLADK-NGRIHTTFNQLATATGRLSSSNPN 609 Query: 720 LQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHR 779 LQNIPI+ LG ++R F++ P +L++ADYSQIELR+LAH++ L + F DIH Sbjct: 610 LQNIPIRGALGPRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHA 669 Query: 780 MVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRF 839 A +F + +VS RR AKTINF ++YG+ P +L +L I EA ++I YF + Sbjct: 670 RTAGILF--DTTEVSADERRKAKTINFGLLYGMGPQKLGRELGISLKEAKEFIAVYFSKL 727 Query: 840 PGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 + E+ E+ + + GYV T+ GRR EINS +++ R AIN +QGSAADI Sbjct: 728 SRVREFYEEIEAGAKSLGYVTTLAGRRRMLPEINSRNTNMAQQARRMAINTVVQGSAADI 787 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 ++AM+ V KS +L ++LQIHDEL+ E P + + M +L Sbjct: 788 IKKAMLEVDKSPVIGELGASLILQIHDELLLEAPAARAREVGEAVAGIMASV----YSLS 843 Query: 960 VPLKVNIKVSNNW 972 VPL V+ V ++W Sbjct: 844 VPLVVDWGVGDDW 856 Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 106/287 (36%), Positives = 160/287 (55%), Gaps = 12/287 (4%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K LFL+DG +FIYR FYA P R DG P +A+ +++KL+ +E SH Sbjct: 10 KTEPLFLIDGHAFIYRGFYAYPDFKRS-DGFPTSAM----YIVFKLVLRLLREENPSHLV 64 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + D A TFR+E+ P YKANRP++PE L QL ++ + GI +E +G EADD IA Sbjct: 65 FVTDGRAPTFRHELLPTYKANRPRMPEGLAAQLEPLKAGLRLLGIRVLEAEGGEADDCIA 124 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV--KEEKIDIEHVIKKWGIPPEKMV 180 + KE +V I+ DKDL Q + ++D KE+ + E +++ G+ P++ Sbjct: 125 SLAGRF-KEERSVVIVGADKDLRQCLDENVVMWDPAQGKEKLVTREGFVEETGLQPDQWA 183 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE-YAET 239 QA+TGD+ DNIPGIP +G KTA L+ + +L+ + N R+ K+ + +L + E Sbjct: 184 DFQAMTGDAADNIPGIPKVGPKTAMGFLRRFPSLDLLKKNFDRLTAKE--QTLLSPHMEQ 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 + RKL LRTD+ L+ L + + +G L F K EF L++ Sbjct: 242 VFVYRKLTTLRTDMCTEFGLDDLAVGEVDGGAL-DFFKEYEFRSLLS 287 >gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277] gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277] Length = 863 Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 184/521 (35%), Positives = 282/521 (54%), Gaps = 35/521 (6%) Query: 465 IGHNIKYD-KLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 IG N+KYD K+V G+ F+D M++++++D G SS + ++A++ Y + Sbjct: 365 IGQNLKYDFKVVKRNLGLEPPVNFKDTMILAWLMDPG-SSVGMDALAKRLYDYDTIKFED 423 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWL----LLRPKLIVEKLLHVYERLDKPMID 578 K ++ ++A E++ + L+ + LL P+L+ H + I Sbjct: 424 VVKRGETFASVALENAAKYAAEDAWITLKFYKSFLNLLDPELLALADTHEF-----AFIL 478 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 + ME GI I+++ ++ + + +L IY+L+GE FN++S KQLG +LF LK Sbjct: 479 TLFDMEREGIAINREKMQNLILRNDAKIKALTSEIYELTGENFNINSVKQLGSVLFEHLK 538 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ- 697 P KTKTG A E I+ ++P+I+ +LE+R+L K++STY + L N K Sbjct: 539 LPVKKKTKTGYSTDEAVLAELID--EHPVIEKLLEYRELYKLQSTYCEPLLNLAKKDANS 596 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 R++T + T TGRL+S PNLQNIP + L + +R F + + DYSQIELR+ Sbjct: 597 RIYTNFIQTGTSTGRLSSKNPNLQNIPARGALAKDVRGCFEAKSDFSFVGLDYSQIELRL 656 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 LAH ++ L + F N DIH A IFG Q R AK+INF +IYG+ +L Sbjct: 657 LAHFSRDEALLRAFANDEDIHARTAISIFG----SAEGQNRAVAKSINFGLIYGMGSSKL 712 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD-EINSPK 876 A Q+ I R+EA +YI+RYF FP I ++E K + G+V T+ GR+ +D +P Sbjct: 713 ANQVSITRAEAKEYIERYFKAFPTIKGFLEGIKTAAKNEGFVRTLLGRKRLFDFTTATPM 772 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE-- 934 + + ER A+N QGSAADI + AM+ + L +MLLQIHDEL+FEV + Sbjct: 773 QTA--MYEREAVNTIFQGSAADIIKMAMVKIRPLLSPR---ARMLLQIHDELIFEVQDGY 827 Query: 935 -EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EE A+Q I+ + K L V LK ++ V+ +W E Sbjct: 828 AEEFGAAAQKIMQEIYK-------LNVLLKTSLNVAKDWGE 861 Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 124/235 (52%), Gaps = 5/235 (2%) Query: 28 RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI 87 + +G P ++GF + + L R+E + + D T R+EI +YKANR + Sbjct: 5 KNREGKPSGMVSGFASFIMNL----RQEFASDYIIFALDSKGKTLRHEILGEYKANRSEP 60 Query: 88 PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQL 147 P L QLP+ + G+ A+ +G+EADDIIA+ ++ V I++ DKDL QL Sbjct: 61 PAALKEQLPVCIEMIEKMGLAAVSREGYEADDIIASVVKECKQRDIFVRIVTHDKDLYQL 120 Query: 148 V-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAAL 206 + +Y + D I+K+G+PP + A+ GDS DNIPG+ GIG A Sbjct: 121 IEDGKVSIYSPQSKIDHDSASCIEKYGVPPSCIRDFLAIAGDSSDNIPGVKGIGAVGAKK 180 Query: 207 LLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEH 261 LL E+GNLE I N ++ ++ R + E E+A LS++L L DVP + L+ Sbjct: 181 LLNEFGNLEGIYENLPLVRNERIRGMLAEGRESAFLSKRLTSLFDDVPDVLDLKR 235 >gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97] gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97] Length = 879 Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 177/518 (34%), Positives = 290/518 (55%), Gaps = 22/518 (4%) Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517 HF+ IGHN+KYD K++ + +G+++ + + D M+++++ + S R + D +A + +Y Sbjct: 378 HFV-IGHNLKYDFKIIQNNFGLNLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 K + + ++A E++ + L+ +L L + LL + + + I Sbjct: 435 LHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLEI-PLLELAKNCEFDFI 493 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 ++ ME GI++D + L+ + + + L E IY L ++FNL+SPKQ+GDILF KL Sbjct: 494 KIIMMMEENGIKLDTNALEALMKKFENEIKILSEEIYTLCEDRFNLNSPKQVGDILFEKL 553 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696 K PSG K KTG + T + L + +P+I IL++R+L+K+ STY + L + + Sbjct: 554 KLPSGKKGKTG-YSTDEKVLHAL-LDKHPVITKILDYRELAKLYSTYCEPLLKLALKDKN 611 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 R+++ + T TGRL+S +PNLQNIP + + F++ S DYSQIELR Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFTSLDYSQIELR 671 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +LAH ++ L F N DIH A IFG + + + R AK+INF +IYG+ Sbjct: 672 MLAHFSEDEKLLNAFTNDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ L+I A YI++YF F I +Y E KN +QNG++ T+ GR+ ++D N+ Sbjct: 728 LSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKP 787 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 I + ER +IN+ +QGSAADI + AM+ ++K L + K K++LQIHDEL+FEV ++ Sbjct: 788 MQIA-MYERESINSILQGSAADIIKLAMLEINKELNEDK---KLILQIHDELIFEVKDDL 843 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME + L+V LK + ++ NW + Sbjct: 844 CENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877 Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 101/328 (30%), Positives = 162/328 (49%), Gaps = 20/328 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R +YA + G ++GF N ++ L + E + + D Sbjct: 4 LTIIDTFGFFFRLYYALKGF-KNSQGQASGMVSGFANFIYGL----KNEYKSDYIIFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EI P YK NR P LL Q+P+ + G ++ +G+EADDIIA++ Sbjct: 59 SKGKTFRSEIDPSYKQNRTPPPPELLEQIPICIEMIEKMGFISVSREGYEADDIIASFVK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 E + V II+ DKDL QL+ T +Y + + D ++K+G+ P ++ AL Sbjct: 119 TCENKDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEVACLEKYGVKPNQIRDFLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GD+ DNIPG+ GIG K A LL E+G++E I N + I+ ++ R +LE E A LS+K Sbjct: 179 CGDNSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLIRNERSRNLLLEGKENAFLSKK 238 Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 L L ++ + T P E +L +++ L+ E L+ ++ D N Sbjct: 239 LASLYENLEVQDLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTI 326 + I ENK I +D+++ I Sbjct: 293 LGFKATLIQ-DENKLFEILNTLDKESII 319 >gi|332670348|ref|YP_004453356.1| DNA polymerase I [Cellulomonas fimi ATCC 484] gi|332339386|gb|AEE45969.1| DNA polymerase I [Cellulomonas fimi ATCC 484] Length = 915 Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 169/522 (32%), Positives = 271/522 (51%), Gaps = 15/522 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H K L G+ + G D L +Y+ R ++D+ +A + Y R+E L Sbjct: 399 KVVHASKEAWHALAGRGMPLAGVTFDTELAAYLCQPDRRAYDLGDLA---IGYLRRE-LG 454 Query: 523 SRKSSIPIDKISDSQVQ-----EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 S + + D ++ A ++ + L +L +L + L+ P++ Sbjct: 455 SEDAQVGGQGALDLELDGTDEGRRAAVRASAVRDLADVLAGELGDRGADGLLRDLELPLV 514 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 DV+++ME TGI D L + + Y + G + NL SPKQL ++LF +L Sbjct: 515 DVLARMERTGIATDGAYLSSLEKSFDAQVQDAAAEAYAVIGREVNLGSPKQLQEVLFDQL 574 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 P K KTG A + +P ++++L R +++ T + L + Sbjct: 575 GMPKTKKIKTGYTTDAASLTDLFARTQHPFLEHLLAHRDAIRLRQTV-EGLLRSVAP-DG 632 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELR 756 R+HT + TGRL+S +PNLQNIPI+T+ G++IRRAF+ + L++ADYSQIE+R Sbjct: 633 RIHTTFQQTIAATGRLSSADPNLQNIPIRTEAGRQIRRAFVVGDGYETLLTADYSQIEMR 692 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 I+AH++ L F + D+H V + +FGV ++V+P MR K +++ + YG+S + Sbjct: 693 IMAHLSGDEGLIDAFRSGEDLHSYVGSRVFGVPTDEVTPAMRSKIKAMSYGLAYGLSSYG 752 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ QL I SEAA ++ YF RF G+ +Y+ + R GY +TI GRR + ++ S Sbjct: 753 LSQQLTIEVSEAAGLMQDYFARFGGVRDYLTGVVDVARTTGYTQTILGRRRYLPDLTSDN 812 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 R ER A+NAPIQGSAAD+ + +M+ V + L LA+++LLQ+HDELV EV E Sbjct: 813 RQRREAAERMALNAPIQGSAADLIKVSMLGVDRELTRRGLASRLLLQVHDELVLEVAAGE 872 Query: 937 ITTASQIIVHSMEKACLPKIN--LRVPLKVNIKVSNNWQEEN 976 ++ M A + L VPL V++ V +W + Sbjct: 873 REEVEALVREQMGAAGDAATDGPLDVPLDVSVGVGGSWHDAG 914 Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 109/287 (37%), Positives = 153/287 (53%), Gaps = 10/287 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P+ G P NA+ GF +ML LL++ +H AV F Sbjct: 23 LLLIDGHSMAYRAFFALPVDKFATSTGQPTNAVFGFTSMLANLLRDEEP----THVAVAF 78 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR E Y YK NR PE Q+ +++ +P +E FEADDI+AT + Sbjct: 79 DVGRTTFRTEQYEAYKGNRDATPEPFRGQVAVIQRVLATMHVPVLEKPHFEADDILATLS 138 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 A +G V + + D+D QLV+ T LY V E ++ V K+G+PPE+ Sbjct: 139 RQARAQGMQVLVCTGDRDAFQLVNDDVTVLYPVKGVSELARMTPAAVEAKYGVPPERYPD 198 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S DN+PG+PG+G KTAA + +Y LE IL +A + K E++ E E R Sbjct: 199 LAALVGESSDNLPGVPGVGPKTAAKWITQYDGLEGILAHADAVTGKA-GESLRENLEQVR 257 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 L+R+L L DV + + E L + L + L LEF L +R+ Sbjct: 258 LNRQLNRLVDDVELPLGPEDLAARPWDRHELHAILDELEFRTLRDRL 304 >gi|227495255|ref|ZP_03925571.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] gi|226831707|gb|EEH64090.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] Length = 893 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 167/494 (33%), Positives = 280/494 (56%), Gaps = 25/494 (5%) Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE-- 544 ED+ L +Y+L + + + ++++K+L + S+P+ + + + E Sbjct: 416 EDVELEAYLLGPDQREYSLPTLSEKYL-----------QRSLPVAESAQLSLLRDFSELA 464 Query: 545 -NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 + V+ L +L +L +L +Y L+ P+ + ++E G+ + D+L Q+ E++ Sbjct: 465 GQAQVVYDLHEVLFKQLETTQLAELYRGLELPVQADLYELEKHGVAMSMDVLNQLLEELT 524 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL-EQINC 662 + + EE Y+ G K NL+SP QL +LF +L+ P KTK G + T A+ L E Sbjct: 525 EQVEVAEEAAYNAIGHKVNLASPMQLQTVLFEELQMPKTKKTKRG-YTTNAEALVELYEK 583 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 +P ++++L R K++ + L + + R+HT + TGRL+S EPNLQN Sbjct: 584 TQHPFLQHLLAHRDKIKMRQI-VEGLISAVGA-DGRIHTTFQQTVAATGRLSSTEPNLQN 641 Query: 723 IPIKTDLGQKIRRAFISPPTK--KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 IP +T G +IR AF+ P T L++ADYSQIE+R++AH++K L + F++ D+HR Sbjct: 642 IPARTAEGMRIRGAFV-PGTGFDYLLTADYSQIEMRLMAHMSKDEALIEAFKSGEDLHRT 700 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 +AA +F V +E+V+P +R K ++ + YG+S + L+ QL I EA ++YF RF Sbjct: 701 MAAMVFAVPVEEVTPALRSQIKATSYGLAYGLSSYGLSQQLGISVPEARKLKEKYFERFG 760 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 G+ ++ + R+ G+ T+ GRR + ++NS +++R + ERAA+NAPIQG+AADI Sbjct: 761 GVGRFLGEVVEEARERGFTATMMGRRRYLPDLNSGNTNLRAMAERAALNAPIQGTAADII 820 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 + AM V + L + LA+++LLQ+HDELV EV E+ QI+ M A L + Sbjct: 821 KLAMHLVMRVLRERGLASRVLLQVHDELVLEVVASELNEVIQIVTDVMSGAA----ELSL 876 Query: 961 PLKVNIKVSNNWQE 974 PL V+ V +WQ+ Sbjct: 877 PLDVSFGVGASWQD 890 Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 112/338 (33%), Positives = 171/338 (50%), Gaps = 29/338 (8%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 + L ++DG S +RAF+A P + G NA+ GF M +L++ E +H A Sbjct: 13 QQKLLIIDGHSMAFRAFFALPPENFTTTTGQATNAVYGFTTMALRLIE----EHQPTHIA 68 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD +FR++ YP+YKA R + P+ Q+ L++ + GI I GFEADDI+A Sbjct: 69 VAFDTKVKSFRSDEYPEYKAGRAETPQEFKGQIGLIKQVLETVGITWITKDGFEADDILA 128 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKEEKI-DIEHVIKKWGIPPEK 178 T ++ G V + S D+D QL++ +Y T + KI D V +++G+PP+ Sbjct: 129 TLAKQGDEAGMKVLVASGDRDSFQLITDNVNVIYPGRTPADLKIMDAAAVEERYGVPPQW 188 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + ALTG+ DN+PG+PG+G KTAA + +Y L +L NA +I KR E + E+ Sbjct: 189 YPHIAALTGEKADNLPGVPGVGEKTAAQWVMKYAGLAGVLANADKIG-GKRGEALREHEA 247 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 +R+L L T++ + + L E N + LEF +L RV +D DA Sbjct: 248 DVLRNRRLNELLTNLELPYNVADLTREPVNRQAVNELFDVLEFNRLRKRV---FDLDA-- 302 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSD 336 N N+ EID TI+T + +SD Sbjct: 303 --------NADSNE------EIDDTRTIETLELKLVSD 326 >gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] Length = 879 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 177/518 (34%), Positives = 291/518 (56%), Gaps = 22/518 (4%) Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517 HF+ IGHN+KYD K++ + +G+++ + + D M+++++ + S R + D +A + +Y Sbjct: 378 HFV-IGHNLKYDFKIIQNNFGLNLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 K + + ++A E++ + L+ +L L LL + + + I Sbjct: 435 LHFESLVKKGENFASVELEKACKYAAEDAYISLRFYLYFLKNLET-PLLELAKNCEFDFI 493 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 ++ ME GI++D + L+ + + + +L E IY L ++FNL+SPKQ+GDILF KL Sbjct: 494 KIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKL 553 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696 K PSG K KTG + T + L + +P+I IL++R+L+K+ STY + L + + Sbjct: 554 KLPSGKKGKTG-YSTDEKVLNAL-LDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKN 611 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 R+++ + T TGRL+S +PNLQNIP + + F++ IS DYSQIELR Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELR 671 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +LAH ++ L F N DIH A IFG + + + R AK+INF +IYG+ Sbjct: 672 MLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ L+I A YI++YF F I +Y E KN +QNG++ T+ GR+ ++D N+ Sbjct: 728 LSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVKNKAKQNGFITTLSGRKRYFDFENAKP 787 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 I + ER +IN+ +QGSAAD+ + AM+ ++K L + K K++LQIHDEL+FEV ++ Sbjct: 788 MQIA-MYERESINSILQGSAADVIKLAMLEINKELNEDK---KLILQIHDELIFEVKDDL 843 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME + L+V LK + ++ NW + Sbjct: 844 CENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/328 (31%), Positives = 162/328 (49%), Gaps = 20/328 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R +YA + G I+GF N ++ L + E + + D Sbjct: 4 LTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEHKSDYIVFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EI P+YK NR P LL Q+P+ + G ++ +G+EADDIIA++ Sbjct: 59 SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSQEGYEADDIIASFVR 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 E V II+ DKDL QL+ T +Y + + D ++K+G+ P ++ AL Sbjct: 119 TCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPHQIRDFLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ GIG K A LL E+G++E I N + ++ ++ R +LE E A LS+K Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLSKK 238 Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 L L ++ + T P E +L +++ L+ E L+ ++ D N Sbjct: 239 LASLYENLEVQDLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTI 326 + I ENK I +D+++ I Sbjct: 293 LGFKATLIQ-DENKLFEILNTLDKESII 319 >gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1] gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1] Length = 888 Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 155/412 (37%), Positives = 232/412 (56%), Gaps = 6/412 (1%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L + L+ P++ V+ ME GI ID+ + E++ L LE +I L+G+ FN Sbjct: 483 LSRLVAELEMPLVPVLVAMERAGIGIDKTAFAAFADEVAGRLAILETDIVALAGKPFNPR 542 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 S +QLG+IL+T L + KT G T+ LE++ G +P++ ILE+R+L K++STY Sbjct: 543 SSQQLGEILYTDLGLKAHGKTPGGAASTSQDALERL-AGAHPLVDRILEFRKLEKLRSTY 601 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK 744 +P + R R+HT + +T TGRL+S PNLQNIPI+ + G+++R F + P + Sbjct: 602 LAPMP-ALADRDSRIHTTLNNMATATGRLSSSNPNLQNIPIRGEFGRRMRACFTAGPGNR 660 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L++ADYSQIELR+LAH++ + L F + DIH AA +F E ++P RR AKTI Sbjct: 661 LVAADYSQIELRVLAHLSGESALLDAFAHGADIHARTAAILFDKPEEAIAPDERRQAKTI 720 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF ++YG+ P +L+ L I A +I RYF R PG+ + E +++G+V T+ G Sbjct: 721 NFGLLYGMGPQKLSRDLGIKLDAAKAFIARYFERLPGLSAFYEGIVEAAKRDGFVTTLAG 780 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR +I S S + + R AIN +QG AADI + AM++ L ++LQI Sbjct: 781 RRRLLPDIGSANSQLSSQARRQAINTVVQGGAADIIKMAMLAAAGDAALAGLGAVLVLQI 840 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 HDEL+ E PE A + M I+L VPL+V+ W E + Sbjct: 841 HDELLLETPEAAAKEAGARLAGLMTGV----ISLAVPLEVDWGTGRTWGEAH 888 Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 109/283 (38%), Positives = 143/283 (50%), Gaps = 9/283 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + LFLVDGS++IYR ++A L+R DG P +A+ +L+K+L KE H Sbjct: 11 QTPLFLVDGSAYIYRGYHAFRDLARS-DGFPTSALFMIFRLLFKIL----KEQEPRHLVF 65 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 D TFR+ IY YKANR +PE L QL +R G+P I QG EADD IA+ Sbjct: 66 FLDGKGPTFRSNIYAAYKANREAMPEPLARQLEPLRQGLSLLGVPVIIPQGAEADDGIAS 125 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKI-DIEHVIKKWGIPPEKMVC 181 V I+ DKDL Q +S LYD + K EKI + GI P Sbjct: 126 LAARFSSN-LPVVIVGADKDLKQCLSDRVVLYDPSGKAEKITTLSDFTADCGIAPASWPD 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 LQAL GD+ DNIPGIPG+G KTA +L++ LE + IK K R+ I+ E Sbjct: 185 LQALVGDTSDNIPGIPGVGPKTALDILRQLPTLEAVRDGLDTIKPKV-RDKIVPLMEELF 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 + R+L L+TD+ L+ L + L FL A E L Sbjct: 244 IYRELTRLKTDILPETSLDDARLGAPDAKALREFLLAYELRNL 286 >gi|76798043|ref|ZP_00780300.1| DNA polymerase I [Streptococcus agalactiae 18RS21] gi|76586602|gb|EAO63103.1| DNA polymerase I [Streptococcus agalactiae 18RS21] Length = 811 Score = 281 bits (720), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 178/485 (36%), Positives = 276/485 (56%), Gaps = 30/485 (6%) Query: 425 ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR 484 +TI+ +V Q++ K L+K I +Y + K K++L+R+ I + Sbjct: 347 DTIYATSNVSLLQEALFKKALSKPIKTY---------------DFKRSKVLLNRFNIDLP 391 Query: 485 --GFEDIMLMSYVLDSGRSSHDIASIAQKW----LSYTRKEILKSRKSSIPIDKISDSQV 538 F D L Y+L S + +++IA+ + L K K +IP ++ Sbjct: 392 EPAF-DTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP----EKTRF 445 Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 EH + V++ + +L + + +++P+ +V+++MEI GI++ ++ L ++ Sbjct: 446 LEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEM 505 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLE 658 + E K + +L + IY+L+G++FN++SPKQLG +LF L P KT +TA D+ Sbjct: 506 AIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVL 565 Query: 659 QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEP 718 + +P++ ILE+RQ++K++STY L ++I ++HT Y T TGRL+S +P Sbjct: 566 ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDP 624 Query: 719 NLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 NLQNIP++ + G+ IR+AF+ S L+S+DYSQIELR+LAHI+K L F+ DI Sbjct: 625 NLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADI 684 Query: 778 HRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 H A +FG+ E V+P RR+AK +NF I+YGIS F L+ L IPR A YI YF Sbjct: 685 HTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYF 744 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+PGI Y+E + GYVET+F RR +INS +IR ER AIN+PIQGSA Sbjct: 745 ERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSA 804 Query: 897 ADITR 901 ADI + Sbjct: 805 ADILK 809 Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 114/287 (39%), Positives = 155/287 (54%), Gaps = 20/287 (6%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M +N L L+DGSS +RAF+A L + + + GL NAI GF ML +L + Sbjct: 1 MTNKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 SH V FD TFR E+Y DYK R K P+ Q P +R GI E++ + Sbjct: 57 --PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHY 114 Query: 116 EADDIIATYTYIAE--KEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVI 169 EADDII T AE E F +T++S DKDL+QL T + + K E+ +++ Sbjct: 115 EADDIIGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLM 174 Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229 +K GI P + + L+AL GD DNIPG+ IG KT LL EYG+LE I N +KQ K Sbjct: 175 EKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKM 234 Query: 230 RENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276 +EN++ E A LS+ L + PITI LE ++ +GP+ I L Sbjct: 235 KENLINDKEQAFLSKTLATINIASPITIGLEDIL---YSGPQDIKAL 278 >gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] Length = 879 Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 177/521 (33%), Positives = 295/521 (56%), Gaps = 28/521 (5%) Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517 HF+ IGHN+KYD K++ + + +++ + + D M+++++ + S R + D +A + +Y Sbjct: 378 HFV-IGHNLKYDFKIIQNNFNLTLPQEYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 K + + ++A E++ + L+ +L L LL + + + I Sbjct: 435 LHFESLVKKGENFTSVELEKACKYAAEDAYITLRFYLYFLKNLET-PLLELAKTCEFDFI 493 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 ++ +E GI++D + L+ + + + +L E IY L ++FNL+SPKQ+GDILF KL Sbjct: 494 KIIMMIEENGIKLDTNALEILMKKFENEIKNLSEEIYILCEDRFNLNSPKQVGDILFEKL 553 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696 K PSG K KTG + T + L + +P+I IL++R+L+K+ STY + L + + Sbjct: 554 KLPSGKKGKTG-YSTDEKVLNAL-LDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKN 611 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 R+++ + T TGRL+S +PNLQNIP + + F++ IS DYSQIELR Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKNYKSCFVAKEGFSFISLDYSQIELR 671 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +LAH ++ L F N DIH A IFG + + + R AK+INF +IYG+ Sbjct: 672 MLAHFSEDEKLLNAFANDEDIHVRTAMMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ L+I S A YI++YF F I +Y EK KN +QNG++ T+ GR+ ++D N+ Sbjct: 728 LSQNLKIEASLAKSYIEKYFENFTSIKKYFEKIKNEAKQNGFITTLSGRKRYFDFENAKP 787 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE-- 934 I + ER +IN+ +QGSAAD+ + AM+ ++K L + K K++LQIHDEL+FEV + Sbjct: 788 MQIA-MYERESINSILQGSAADVIKLAMLEINKELNEDK---KLILQIHDELIFEVKDKL 843 Query: 935 -EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E ++ I+ ++ + L+V LK + ++ NW + Sbjct: 844 CENFVKKTRDIMENI-------VKLKVKLKTSSSIAKNWGD 877 Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 140/261 (53%), Gaps = 6/261 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R +YA L + G I+GF N ++ L + E + + D Sbjct: 4 LTIIDTFGFFFRLYYALKGL-KNSQGQASGMISGFANFIYSL----KNEHKSDYIIFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EI P+YK NR P LL Q+P+ + G ++ +G+EADDIIA++ Sbjct: 59 SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSQEGYEADDIIASFVK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 I + + V II+ DKDL QL+ T +Y + + + ++K+G+ P ++ AL Sbjct: 119 ICKDKDIFVRIITQDKDLYQLIKDGKTDIYSPISKNNYNEAACLEKYGVKPCQIRDFLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ GIG K A LL E+G++E I N + ++ ++ R +LE E A LS+K Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERNRTLLLEGKENAFLSKK 238 Query: 246 LVMLRTDVPITIPLEHLILED 266 L L ++ + +E I D Sbjct: 239 LASLYENLEVQNLIEKAIYPD 259 >gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2] Length = 892 Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 154/392 (39%), Positives = 239/392 (60%), Gaps = 9/392 (2%) Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D D+ + + +E + + EE ++ +GEK NLSSPKQL +LF KL P Sbjct: 503 MERAGIAVDMDIFEGLRSEFDERVTRAEEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562 Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TK+G + T A L + ++P + ++LE R K++ T D L I + RVHT Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y +TGRL+S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ D H + A+ +FGV E VS R K +N+ + YG+S + L+ Q Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ EA + + YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ++ ERAA+NAPIQGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ ++M A ++L VPL V+I V +W Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887 Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 104/311 (33%), Positives = 156/311 (50%), Gaps = 13/311 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 9 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 65 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALHIVHLSKENYEADDILATLS 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ + P + Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVSPARYPE 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A +K K ++ ++ + Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTTYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298 +RKL L D+ + + L L + + LEF L +RV AT D D + Sbjct: 244 RNRKLNALVRDLDLDVTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303 Query: 299 IEPVVLDINTT 309 L+I+ T Sbjct: 304 EVDDTLEISGT 314 >gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1] gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2] gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1] gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1] Length = 892 Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 154/392 (39%), Positives = 239/392 (60%), Gaps = 9/392 (2%) Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI +D D+ + + +E + + EE ++ +GEK NLSSPKQL +LF KL P Sbjct: 503 MERAGIAVDMDIFEGLRSEFDERVTRAEEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 562 Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TK+G + T A L + ++P + ++LE R K++ T D L I + RVHT Sbjct: 563 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 619 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y +TGRL+S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH Sbjct: 620 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 679 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ D H + A+ +FGV E VS R K +N+ + YG+S + L+ Q Sbjct: 680 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 739 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ EA + + YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R Sbjct: 740 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 799 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ++ ERAA+NAPIQGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E Sbjct: 800 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 859 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ ++M A ++L VPL V+I V +W Sbjct: 860 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 887 Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 104/311 (33%), Positives = 156/311 (50%), Gaps = 13/311 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 9 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 65 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALHIVHLSKENYEADDILATLS 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ + P + Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVSPARYPE 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A +K K ++ ++ + Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298 +RKL L D+ + + L L + + LEF L +RV AT D D + Sbjct: 244 RNRKLNALVRDLDLDVTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303 Query: 299 IEPVVLDINTT 309 L+I+ T Sbjct: 304 EVDDTLEISGT 314 >gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] Length = 952 Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 174/550 (31%), Positives = 294/550 (53%), Gaps = 25/550 (4%) Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF- 486 +IDL+ QD+ +N L + + K+ H K L G+ + G Sbjct: 418 YIDLA---GQDAESENVLAG--------WLRDPESPKVLHGFKAALKALTSRGLELEGVV 466 Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIEN 545 +D + Y++ R ++++A +AQ L+ + K+ + + D D + +++ Sbjct: 467 DDTSISGYLIQPDRRTYELAELAQHHLNVGIPQATAKAGQLELSFDG-EDEAAADALVQS 525 Query: 546 SNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 + V+ L +L + + L+ P+ V++ ME+ GI ID + A++++ Sbjct: 526 AAVVQALSRYFEGELKERRAEELLSTLELPVSRVLADMELAGIGIDMARMDDQLADLARV 585 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI--NCG 663 + +E + G + NL SPKQL +LF +L+ P K K+G + T A L+ + G Sbjct: 586 IDQAQEQAFAAIGHEVNLGSPKQLQTVLFEELQLPKTKKIKSG-YTTDAASLKNLLEKTG 644 Query: 664 DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 +++ ++ R+ +K++ +SL + + R+HT Y+ TGR++S PNLQNI Sbjct: 645 HEFLVQ-LMAHREAAKLRQML-ESLKKSVAE-DGRIHTTYAQNVAATGRISSNNPNLQNI 701 Query: 724 PIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 PI+++ G+++R F+ + L+SADYSQIE+RI+AH++ L Q +++ D+HR V Sbjct: 702 PIRSEEGRRVRGIFVVGEGYECLLSADYSQIEMRIMAHLSGDQGLIQAYKDGEDLHRFVG 761 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 + IF V E+V+ MR K +++ + YG++ F L+ QL I EA +K YF RF + Sbjct: 762 SNIFHVPAEEVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLMKEYFDRFGAV 821 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y+ + R +GY TI GRR + ++ S +R ER A+N+PIQGSAADI +R Sbjct: 822 RDYLRGVVDQARVDGYTATIEGRRRYLPDLTSTDRQLRENAERIALNSPIQGSAADIIKR 881 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AM+ VH L+ LA++MLLQ+HDELV EV E +++ M A +L VPL Sbjct: 882 AMLGVHAELKAQGLASRMLLQVHDELVLEVAPGERGAVEKLVTDQMAAAA----DLSVPL 937 Query: 963 KVNIKVSNNW 972 +V I V +W Sbjct: 938 EVQIGVGPSW 947 Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 104/311 (33%), Positives = 157/311 (50%), Gaps = 26/311 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAF+A P +G NAI GF +ML L+ KE +H AV F Sbjct: 65 LLVLDGHSMAFRAFFALPADKFSTANGQHTNAIHGFTSMLINLI----KEQQPTHVAVAF 120 Query: 66 DYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 D T R Y +YK R + P + Q+ L+ +A+GI I + G+EADDI+AT Sbjct: 121 DVSDETTHRKTEYTEYKGGRNETPREMNNQIDLIAQVMEAWGIKTITMPGYEADDILATL 180 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 + EK GF V +++ D+D QL++ P + D ++D + K+ +PP Sbjct: 181 ATMGEKAGFEVLLVTGDRDAFQLINDNVFVLYPKKGVSDI---PRLDAAAIEAKYFVPPS 237 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENIL 234 + L AL G++ DN+PG+PG+G KTAA + YG L+ +L + I K REN+ Sbjct: 238 RYSDLAALVGETADNLPGVPGVGPKTAAKWINLYGGLDGVLEHLDSIGGKVGDALRENV- 296 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY-- 292 E + +R+L L TD+ + + L+ L N L LEF + +R+ Y Sbjct: 297 ---EAVKRNRRLNELHTDLALPVTLDDLYQPRPNQAALEDLFDKLEFKTIRSRLFALYGD 353 Query: 293 -DCDAANIEPV 302 D AA E + Sbjct: 354 EDSPAAERESI 364 >gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] Length = 879 Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 180/516 (34%), Positives = 286/516 (55%), Gaps = 22/516 (4%) Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517 HF+ IGHN+KYD ++ + + ++ + + D M+++++ + S R + D +A + Y Sbjct: 378 HFI-IGHNLKYDFAIIENNFKLTPPKKYADTMILAWLYNPSLRVNMD--DLALRLFDYKT 434 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 K + + +A E++ + L+ +L L LL + + I Sbjct: 435 LHFESVVKKGENFASVELEKACNYAAEDAYITLRFYLYFLKNL-EPNLLKLGFESEFNFI 493 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 +V+ +ME GI+++ L+ + E K + L E IY L +KFNL+SPKQ+GD+LF KL Sbjct: 494 EVLRKMEQNGIKLETQKLQNLMQEFEKEIKLLSEEIYTLCDDKFNLNSPKQVGDVLFEKL 553 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696 K PS KTKTG + T + LE + +P++ IL +R+L+K+ STY + L + Sbjct: 554 KLPSAKKTKTG-YSTDEKVLESL-IDKHPVVSKILAYRELAKLYSTYCEPLLKLALKDEN 611 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 R+++ + T TGRL+S EPNLQNIP + + FI+ IS DYSQIELR Sbjct: 612 SRIYSSFLQTGTATGRLSSKEPNLQNIPAHGQYAKDYKSCFIAEDGFSFISLDYSQIELR 671 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +LAH ++ L + F+N DIH A IFG N + + R AK+INF +IYG+ Sbjct: 672 MLAHFSEDEKLLEAFKNDEDIHARTAIMIFGEN----NYETRSVAKSINFGLIYGMGYKT 727 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ L+I S A YI++YF F I + EK KN + NG++ T+ GR+ ++D N+ Sbjct: 728 LSQNLKIEASLAKTYIEKYFANFTSIKSFFEKVKNDAKINGFISTLSGRKRYFDFANAKP 787 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 + + ER +IN+ +QGSAADI + AM+ ++K L+ K +++LQIHDEL+FEV +E Sbjct: 788 MQVA-MYERESINSILQGSAADIIKLAMLELYKELDADK---RLILQIHDELIFEVKDEL 843 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + ME + L+V LK + ++ NW Sbjct: 844 CEKFEKRARDIMENI----VKLKVNLKTSSSIAKNW 875 Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 104/329 (31%), Positives = 165/329 (50%), Gaps = 16/329 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R FYA + G P ++GF N ++ L + E + + D Sbjct: 4 LTIIDTFGFFFRLFYALKNF-KNSKGEPSGMVSGFANFIYSL----KNEYKSDYIIFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EI P+YK NR P LL Q+P+ + G +I + +EADDIIA+ Sbjct: 59 SKGKTFRSEIDPNYKTNRTPPPPELLAQIPICIKMIEKMGFVSISKEYYEADDIIASVVK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 + V II+ DKDL QL+ +Y + + D ++K+G+ P ++ AL Sbjct: 119 SCNDKDIFVRIITQDKDLYQLIKDGKVSIYSPISKNDYDEAACLEKYGVKPSQIKDFLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ GIG K A LL E+GN+E I N S ++ ++ + +LE E A LS+K Sbjct: 179 CGDSADNIPGVKGIGAKGAKNLLDEFGNIEEIYENLSFVRNERSKNLLLEGKENAFLSKK 238 Query: 246 LVMLRTDVPITIPLEHLILEDCNGP--RLISFLKALEFTKLINRVATTYDCDAANI---E 300 L L D+ + +E + P R++ +L+ E L+ ++ N+ Sbjct: 239 LASLYEDLDLEDLIEKSVYTQ-EEPLLRVLDYLERFELNSLLKKLKANPQNRNQNLGFKA 297 Query: 301 PVVLDINTTENKGIAIETE----IDRDTT 325 ++LD NT +K ++E+E D +TT Sbjct: 298 TLILDENTLFDKLESLESESIIAFDTETT 326 >gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083] gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083] Length = 694 Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 174/521 (33%), Positives = 278/521 (53%), Gaps = 28/521 (5%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K V + S+ G D L +Y++ GR S D+ +++ L Y +E+ Sbjct: 187 KVLHNAKGAMRVFAEHDWSVAGVSMDTALAAYLVKPGRRSFDLDALS---LEYLGRELAP 243 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + +D + A+ + +L L +L + ++ P +++ Sbjct: 244 PAAADGQLAFGADDGAEAEALMVQARAVLDLGSAFEGRLAEVGAADLLRDMELPTSALLA 303 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +ME GI D+ L+ + + + + + +G +FNL SPKQL ++LF +L P Sbjct: 304 RMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHGAAGHEFNLGSPKQLQEVLFGELGLPK 363 Query: 642 GAKTKTG--------QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 KTKTG W T D E P+I +L R+ +K++ T + L I Sbjct: 364 TKKTKTGYTTDADALAWLATQTDNEL------PVI--MLRHREQAKLRVTV-EGLIKTIA 414 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQ 752 R+HT ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQ Sbjct: 415 A-DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQ 473 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELR++AH+++ L + F + D+H A+++F V V +MRR K +++ + YG+ Sbjct: 474 IELRVMAHLSEDAGLIEAFTSGEDLHTTAASQVFAVEPGAVDAEMRRKIKAMSYGLAYGL 533 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S F L+ QL I EA + YF RF G+ +Y+ + + R GY T+FGRR + ++ Sbjct: 534 SAFGLSQQLNIEAGEARALMDAYFERFGGVRDYLRRAVDEARATGYTATLFGRRRYLPDL 593 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 NS R ER A+NAPIQG+AADI + AM+ V +L D LA++MLLQ+HDE+V EV Sbjct: 594 NSDNRQRREAAERMALNAPIQGTAADIVKIAMLKVDGALRDAGLASRMLLQVHDEIVLEV 653 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E A +I+ M A ++LRVPL V++ ++W+ Sbjct: 654 APGERGVAEEIVRREMSDA----VDLRVPLGVSVGDGSDWE 690 >gi|254384234|ref|ZP_04999578.1| DNA polymerase I [Streptomyces sp. Mg1] gi|194343123|gb|EDX24089.1| DNA polymerase I [Streptomyces sp. Mg1] Length = 906 Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 170/520 (32%), Positives = 279/520 (53%), Gaps = 27/520 (5%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K V +G S+ G D L +Y++ GR S + ++ + Y +E+ Sbjct: 400 KVVHNAKGLMRVFPEHGWSLAGVAMDTALAAYLVKPGRRSFALDVLS---MEYLHRELQP 456 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 + + D+ E + + +L L +L + ++ P +++++ Sbjct: 457 AAQDGQLAFGSDDTAEAEALMAQARAVLDLGDAFTGRLAEVGAAELLHEMELPTSELLAR 516 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI D+D L+ + + + + + + G +FNL SPKQL ++ F +L P Sbjct: 517 MERAGIAADRDHLEAMEQQFAGAVQQAVKEAHAAVGHEFNLGSPKQLQEVFFGELDLPKT 576 Query: 643 AKTKTGQ--------WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 KTKTG W T D E P+I +L R+ +K++ T + L I Sbjct: 577 KKTKTGYTTDADALAWLATQTDHEL------PVI--MLRHREQAKLRVTV-EGLVKTIGA 627 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753 RVHT +S TGRL+S +PNLQN+P++TD G+ IRR F+ + L++ADYSQI Sbjct: 628 -DGRVHTSFSQIVAATGRLSSTDPNLQNVPVRTDEGRAIRRGFVVGEGFESLMTADYSQI 686 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELR++AH+++ L + F + D+H VA+++FGV +V P+MRR K +++ + YG+S Sbjct: 687 ELRVMAHLSEDEGLIEAFLSGEDLHTTVASQVFGVERGEVDPEMRRKIKAMSYGLAYGLS 746 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 F L+ QL I EA ++ +F RF G+ +Y+++ R GY +T+ GRR + ++N Sbjct: 747 AFGLSQQLNIDPGEARGLMETFFERFGGVRDYLQRVVEEARATGYTQTVLGRRRYLPDLN 806 Query: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVP 933 S R ER A+NAPIQG+AADI + AM+ V K++ + L ++MLLQ+HDE+V E+ Sbjct: 807 SDNRMRREAAERMALNAPIQGTAADIVKVAMLRVDKAITEAGLKSRMLLQVHDEIVLEIA 866 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E +++ M A + LR PL V++ V +W+ Sbjct: 867 PGERKKVEELVRREMGAA----VELRAPLDVSVGVGPDWE 902 Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 101/254 (39%), Positives = 144/254 (56%), Gaps = 10/254 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NAI GF +ML N+ ++ +HFAV F Sbjct: 20 LMLMDGHSLAYRAFFALPAENFTTAGGQPTNAIYGFASML----ANTLRDEAPTHFAVAF 75 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R+ +P+YKANR K P+ Q+ L+ A +P + GFEADD+IAT Sbjct: 76 DVSRKTWRSTEFPEYKANRSKTPDEFKGQVELIGELLDAMSVPRFAVDGFEADDVIATLA 135 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE GF V I++ D+D QLVS TT LY T V E + E V +K+G+ P++ Sbjct: 136 TQAEALGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVEEKYGLTPQQYPD 195 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ A +K K +N ++ E + Sbjct: 196 FAALRGDPSDNLPGIPGVGEKTAAKWITQFGSFAELVERAEEVKGKA-GQNFRDHLEAVK 254 Query: 242 LSRKLVMLRTDVPI 255 L+R L + DV + Sbjct: 255 LNRVLTEMVKDVEL 268 >gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032] gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032] Length = 899 Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 177/526 (33%), Positives = 294/526 (55%), Gaps = 14/526 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 L + +E K+ H+ K L +G ++ G D + +Y+ + S+D+ +A + Sbjct: 377 LAGWLADETRPKVLHDSKPAVLAFAAHGWTLAGIARDTQIAAYLARPDQRSYDLTDLALR 436 Query: 512 WLSYTRKEILKSRKSSIPIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLI--VEKLLHV 568 +L + + + +D + D + +++ + ++ L L + +L E+ + Sbjct: 437 YL-HRELRVDVPDDGQLTLDGLGGDGEAEQNLMLHARATLDLADAIDAELSRDGEQSARL 495 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 ++ P++ V++ ME GI D D L ++ A + + + + Y + G +FNL SPKQ Sbjct: 496 MAGVELPLMRVLAGMERVGIAADTDYLSELEAHFAAEVKAAAQAAYAVIGREFNLGSPKQ 555 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADS 687 L +ILF +L P K KTG + T A L+ + ++P++ ++L R ++++KST D Sbjct: 556 LQEILFGELNLPKTKKIKTG-YTTDADALQWLYAQTEHPLLHHLLRHRDVARLKST-VDG 613 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L ++ R+HT ++ TGRL+S EPNLQNIPI+T+ G++IRRAF+ + L+ Sbjct: 614 LLKSVSD-DGRIHTTFNQTVAATGRLSSTEPNLQNIPIRTEEGRRIRRAFVVGEGYECLL 672 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 +ADYSQIE+RI+AH++ L + F + D H A+ +F V + +V+P RR K +N+ Sbjct: 673 TADYSQIEMRIMAHLSGDEALIEAFNSGHDFHAATASSVFEVAVAEVTPDQRRKIKAMNY 732 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 + YG+S F L+ QL I EA ++ YF F G+ +Y+++ RQ+GY TI GRR Sbjct: 733 GLAYGLSAFGLSQQLGITAEEARGLMEVYFAGFGGVRDYLQEVVARARQDGYTSTILGRR 792 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + ++ S R + ER A+NAPIQGSAADI + AM+ V +L D L ++MLLQ+HD Sbjct: 793 RYLPDLVSDNRQRREMAERMALNAPIQGSAADIIKVAMLHVDTALRDAGLRSRMLLQVHD 852 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ELVFEV E T +++ M A L VPL+V++ +W Sbjct: 853 ELVFEVAPGERATLEELVRREMGGA----YPLSVPLEVSVGEGRDW 894 Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 124/226 (54%), Gaps = 9/226 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L LVDG S YRAF+A P+ + G P NA+ GF +ML +L++ + +H V F Sbjct: 8 LLLVDGHSLAYRAFFALPVENFSTTTGQPTNAVYGFTSMLINVLRDEQP----THIVVAF 63 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR E Y +YKA R + P Q+ LV+ A IP +E +G+EADDIIAT Sbjct: 64 DVSRRSFRTEKYAEYKAGRSETPTDFKGQVSLVKEVLAALRIPVVEKEGYEADDIIATLA 123 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPT-TCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A +G V I + D+D QLV T LY ++D V K+G+ P + Sbjct: 124 CQARDQGMPVLISTGDRDAFQLVDEQITVLYPRKGVSDLARMDPAAVEAKYGVGPGRYRD 183 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 L AL G++ DN+PG+PG+G KTAA + YG +E I+ A IK K Sbjct: 184 LAALVGETSDNLPGVPGVGPKTAAKWINTYGGVEGIIARADEIKGK 229 >gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] Length = 903 Score = 281 bits (718), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 170/513 (33%), Positives = 280/513 (54%), Gaps = 12/513 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K V +G + G D L +Y++ GR S + ++A ++L +E+ Sbjct: 396 KVLHNAKNVMRVFPEHGWRLEGVTMDTALAAYLVKPGRRSFALDALAVEYLG---RELAP 452 Query: 523 SRKSSIPIDKISDSQVQEHAI-ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + S + +D + ++ A+ + +L L +L + ++ P +++ Sbjct: 453 AAASDGQLAFGADDRAEQDALMAQARAVLDLGDAFTTRLKEVGAAELLHDMELPTSILLA 512 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ++E GI D+ L+ + + + + + + G +FNL SPKQL +ILF +L P Sbjct: 513 RLERHGIAADRAHLEGMEQQFAGTVQQAVKEAHAAVGREFNLGSPKQLQEILFGELGLPK 572 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG ++ + +L R+ +K++ T + L I R+HT Sbjct: 573 TKKTKTGYTTDADALAWLAAQTEHELPVLMLRHREQAKLRVTV-EGLIKTIAA-DGRIHT 630 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQIELR++AH Sbjct: 631 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAH 690 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ L + F + D+H VA+++FGV + V +MRR K +++ + YG+S F L+ Q Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVGKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 750 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I +EA + YF RF G+ +Y+ + R GY ETI GRR + ++NS R Sbjct: 751 LNIDPAEARVLMDTYFERFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRR 810 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQG+AADI + AM+ V K+L + KL ++MLLQ+HDE+V E+ + E Sbjct: 811 EAAERMALNAPIQGTAADIVKVAMLRVDKALTEAKLTSRMLLQVHDEIVLEIAKGERKQV 870 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +I+ H M A + LR PL V++ V +W+ Sbjct: 871 EEILRHEMANA----VELRAPLDVSVGVGKDWE 899 Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 94/254 (37%), Positives = 142/254 (55%), Gaps = 10/254 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NA+ GF +ML N+ ++ +HFAV F Sbjct: 16 LLLMDGHSLAYRAFFALPAENFTTAVGQPTNAVYGFMSML----ANTLRDEAPTHFAVAF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R + +P+YKANR K P+ Q+ L+ A + GFEADD+IAT Sbjct: 72 DVSRKTWRAQEFPEYKANRSKTPDEFKGQVELIGELLDAMRADRFAVDGFEADDVIATLA 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE GF V I++ D+D QL++ T LY T V E + E V++K+G+ P++ Sbjct: 132 TQAEAAGFEVLIVTGDRDSFQLITENVTVLYPTKGVSELTRFTPEKVVEKYGLTPQQYPD 191 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ A +K K +N ++ + + Sbjct: 192 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERAEEVKGKA-GQNFRDHLDAVK 250 Query: 242 LSRKLVMLRTDVPI 255 ++R L + DV + Sbjct: 251 MNRVLTEMVRDVEL 264 >gi|291286346|ref|YP_003503162.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809] gi|290883506|gb|ADD67206.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809] Length = 798 Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 163/422 (38%), Positives = 238/422 (56%), Gaps = 11/422 (2%) Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 + KL LL VY ++ P+ + +ME GI D+D++ +V+ ++ + + E I Sbjct: 382 KDKLKANGLLEVYLGMELPVAYCLGKMENNGIGFDKDVMAKVADKLQDEVAEISEKIKTF 441 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILE--- 673 G NL+SPKQL LF +L KTKTG + T + L + NP+ ++LE Sbjct: 442 VGYDINLNSPKQLQVFLFEELGVEGLKKTKTG-FSTDEESLRAM-IPMNPLYAHVLEDIL 499 Query: 674 -WRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK 732 +R+L+K+ STYA L +++ R+H+ + T TGRL+S+ PN+QNIP+K G K Sbjct: 500 VYRELAKLLSTYALPLKDYV-LADGRIHSSFRQTGTATGRLSSVNPNMQNIPMKGKWGVK 558 Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792 +R AFI +S DYSQIELRILAH+ L + + N+ DIH A+ IFGV EK Sbjct: 559 LREAFIPREGYSFVSFDYSQIELRILAHLTGDEHLKEAYRNNEDIHTKTASGIFGVAPEK 618 Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852 V MRR AK +NF I+YG+SPF L+ + + EA +I++YF +P + +IEK Sbjct: 619 VDSGMRRLAKAVNFGILYGLSPFGLSRDTGVSQKEAKKFIEKYFATYPKVKGFIEKIAKE 678 Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912 ++ GY ET+ GR+ EI S ++ ER A N P+QGSAADI + AM+ L+ Sbjct: 679 TKEKGYAETLAGRKRFIREIRSKNRTVAMRGERIATNVPMQGSAADIIKLAMVECQAVLD 738 Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 D + ++LQ+HDELVFEV +++I S + ME + L VPL VN N Sbjct: 739 DKEYDALVVLQVHDELVFEVLDKDIDEFSDRVRSIMEGV----MELDVPLVVNGAAGKNL 794 Query: 973 QE 974 E Sbjct: 795 GE 796 Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 100/295 (33%), Positives = 164/295 (55%), Gaps = 16/295 (5%) Query: 9 LVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 ++DGS +R ++ +P L+ G+P + I G + L+ +E+IA V+FD Sbjct: 4 VIDGSYIAFRTYHKSPPLTNSA-GVPTSVIHGVMQSIITLINKYGRENIA----VVFDAK 58 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 R+EI+P+YKA R PE L Q ++ G+ ++ G+E DDI+AT IA Sbjct: 59 GKNRRHEIHPEYKATRDATPEDLGLQFGIMDELIPLLGVAYYKVDGYEGDDIMAT---IA 115 Query: 129 EKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGD 188 V +++ DKD+ Q+V +YD+ K E + VI+K+G+PPEK+ L AL GD Sbjct: 116 AHTKDDVGMLTKDKDIYQIVDDRVKIYDSQKGEFFGRDMVIEKFGVPPEKVRELLALAGD 175 Query: 189 SIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVM 248 + DNIPG+ G+G KTAA LL E+G+L+ I N +K K ++ +++ ++A LS LV Sbjct: 176 TADNIPGVAGVGVKTAAKLLNEHGSLDGIYENIESVKG-KLKDKLIDNKDSAYLSYDLVG 234 Query: 249 LRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVV 303 L D+ +IP ++ +D +L L LE + +++ D D+ +++P V Sbjct: 235 L--DILESIPDVEIVKDD---KKLSEKLTELELKTIQSKLFA--DSDSEDVQPDV 282 >gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC] gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC] Length = 869 Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 201/629 (31%), Positives = 333/629 (52%), Gaps = 27/629 (4%) Query: 357 KLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITD------TMDAFHSKPIAIA 410 K Y + + + + VQ++E S +II + + H K +A + Sbjct: 256 KFPLYEAHQEELNAFYMRQGFKTLVQQVEEASSVDVEIINNNKQLAHVLSTLHGKSVAFS 315 Query: 411 ISTLDQKDDTSFKVETIFIDLSVHTSQDS--TGKNTLTKEILSYLKKFFENEHFLKIGHN 468 + SF + +++ + D ++L+ L+ FF E G+N Sbjct: 316 VGY-----KGSFLPSLTLMGVALASDDDVYYVDIEHALDDVLTPLQYFFRREDTTFYGYN 370 Query: 469 IKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG-RSSHDIASIAQKWLSYTRKEILKSRKS 526 IK D L GI + D+ L ++++ G + S+ + +S + + + Sbjct: 371 IKRDNHALKNAGIHVHNIALDLALAEHLINGGAKISYQTLLMDHGLVSSAGRYGKEWGQL 430 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEIT 586 S+PI K + Q S+ + ++ L +L ++ + ++ ++ P+ V+ +E Sbjct: 431 SLPIAKSPANPAQYFGGFVSH-LPKIKKSLLEELKIKGVEDLFFNMEMPLEKVLFTIERN 489 Query: 587 GIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK 646 G+ +D + L+++ +S+ L L ++IY L+G FN+ SPKQL ++L+ KL K + Sbjct: 490 GMPLDVEDLQELERILSEELAMLTDDIYTLAGAPFNIKSPKQLSEVLYNKLGLKPIDKAR 549 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 + T A+ LE ++ G++ II+ IL +R + K+ STY +LP ++ T R+H ++ Sbjct: 550 S----TKAEVLEALS-GEHEIIEKILAFRAVEKLLSTYVKALPRQVDPSTSRIHPTFNQM 604 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHIAKIT 765 T+TGRLA +PNLQNIPI+++ G+ +R+AF + +SADYSQIELR LAH+++ Sbjct: 605 GTVTGRLACQDPNLQNIPIRSERGRLLRKAFCNTHQNNYFLSADYSQIELRFLAHLSQDE 664 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 L FE+ DIH A+++F V +E+V+ Q R AKT+NF IIYG + L+ L+I Sbjct: 665 SLKLAFESREDIHTFTASQVFHVPLEEVTKQQRMQAKTVNFGIIYGQQAYGLSKILKISV 724 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 SEA I YF R+P + +I +T + +N V+T+ GR D +S R + R Sbjct: 725 SEAQKLIDAYFDRYPEVARFINETVSQACENLRVKTLLGRERIIDNWTEFSNS-RAASGR 783 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 A+N IQGSAA++ + AM+ + +LE KL ++MLLQIHDEL+FEVPEEE ++ Sbjct: 784 LAVNTRIQGSAAELIKLAMLQLSDALEKRKLKSRMLLQIHDELIFEVPEEEKEEMQTLVR 843 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ME A + L VPL VNI + NW E Sbjct: 844 DIMESAMI----LSVPLVVNILIGKNWAE 868 Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 104/298 (34%), Positives = 160/298 (53%), Gaps = 12/298 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 +F++D S F++RA++A P + + G A+ GF + KL+ KE SH +FD Sbjct: 4 IFILDASGFVFRAYFALPDM-KNSSGEGTQAVFGFIRSINKLI----KEFSPSHMVAVFD 58 Query: 67 YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P R EIY DYK+NR + E L Q+P+V+ G+ +E++G EADD+IA+ T Sbjct: 59 GPNNKQSRREIYADYKSNREQKEENLYQQIPVVKEYCSLLGLSYLEVEGVEADDVIASAT 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCLQA 184 A EG+ V I + DKDL+QLV P + K++ +ID VI +GIPP + A Sbjct: 119 RQAVSEGYQVCICTADKDLLQLVGPNVVALNPWKDQPEIDENRVIDIYGIPPTGISDYLA 178 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD+ DNIPG+ G G K A LLQ+Y ++E IL N + + + E + LS+ Sbjct: 179 LVGDTSDNIPGVSGCGPKKATALLQKYHSVEGILENLDELTGSTHK-MLSEQKDVLLLSK 237 Query: 245 KLVMLRTDVPITIPLEHLI--LEDCNGPRLISFLKALEFTKLINRV--ATTYDCDAAN 298 L +L +P+ ++ L L + + L +F F L+ +V A++ D + N Sbjct: 238 SLAVLNDAIPLPKRIDELKFPLYEAHQEELNAFYMRQGFKTLVQQVEEASSVDVEIIN 295 >gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] Length = 879 Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 177/518 (34%), Positives = 289/518 (55%), Gaps = 22/518 (4%) Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517 HF+ IGHN+KYD K++ + +G+++ + + D M+++++ + S R + D +A + +Y Sbjct: 378 HFV-IGHNLKYDFKIIQNNFGLNLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 K + + ++A E++ + L+ +L L LL + + + I Sbjct: 435 LHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLEA-PLLELAKNCEFDFI 493 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 ++ ME GI++D + L+ + + + +L E IY L ++FNL+SPKQ+GDILF KL Sbjct: 494 RIIMMMEENGIKLDTNALEALMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKL 553 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696 K PSG K KTG + T + L + +PII IL++R+L+K+ STY + L + + Sbjct: 554 KLPSGKKGKTG-YSTDEKVLNAL-LDKHPIIPKILDYRELAKLYSTYCEPLLKLALKDKN 611 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 R+++ + T TGRL+S +PNLQNIP + + F++ IS DYSQIELR Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELR 671 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +LAH ++ L F N DIH A IFG + + + R AK+INF +IYG+ Sbjct: 672 MLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ L+I A YI++YF F I +Y E KN +QNG++ T+ R+ ++D N+ Sbjct: 728 LSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVKNEAKQNGFITTLNSRKRYFDFENAKP 787 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 I + ER +IN+ +QGSAAD+ + AM+ + K L + K K++LQIHDEL+FEV ++ Sbjct: 788 MQIA-MYERESINSILQGSAADVIKLAMLEIDKELNEDK---KLILQIHDELIFEVKDDL 843 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME + L+V LK + ++ NW + Sbjct: 844 CENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877 Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/328 (31%), Positives = 162/328 (49%), Gaps = 20/328 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R +YA + G I+GF N ++ L + E + + D Sbjct: 4 LTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEHKSDYIVFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EI P+YK NR P LL Q+P+ + G ++ +G+EADDIIA++ Sbjct: 59 SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSREGYEADDIIASFVR 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 E V II+ DKDL QL+ T +Y + + D ++K+G+ P ++ AL Sbjct: 119 TCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPHQIRDFLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ GIG K A LL E+G++E I N + ++ ++ R +LE E A LS+K Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLSKK 238 Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 L L ++ + T P E +L +++ L+ E L+ ++ D N Sbjct: 239 LASLYENLEVQDLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTI 326 + I ENK I +D+++ I Sbjct: 293 LGFKATLIQ-DENKLFEILNTLDKESII 319 >gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] Length = 903 Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 170/513 (33%), Positives = 280/513 (54%), Gaps = 12/513 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K V +G + G D L +Y++ GR S + ++A ++L +E+ Sbjct: 396 KVLHNAKNVMRVFPEHGWRLEGVTMDTALAAYLVKPGRRSFALDALAVEYLG---RELAP 452 Query: 523 SRKSSIPIDKISDSQVQEHAI-ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + S + +D + ++ A+ + +L L +L + ++ P +++ Sbjct: 453 AAASDGQLAFGADDRAEQDALMAQARAVLDLGDAFTTRLKEVGAAELLHDMELPTSILLA 512 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ++E GI D+ L+ + + + + + + G +FNL SPKQL +ILF +L P Sbjct: 513 RLERHGIAADRAHLEGMEQQFAGTVQQAVKEAHAAVGREFNLGSPKQLQEILFGELGLPK 572 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG ++ + +L R+ +K++ T + L I R+HT Sbjct: 573 TKKTKTGYTTDADALAWLAAQTEHELPVLMLRHREQAKLRVTV-EGLIKTIAA-DGRIHT 630 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQIELR++AH Sbjct: 631 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAH 690 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ L + F + D+H VA+++FGV + V +MRR K +++ + YG+S F L+ Q Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 750 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I +EA + YF RF G+ +Y+ + R GY ETI GRR + ++NS R Sbjct: 751 LNIDPAEARVLMDTYFERFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRR 810 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQG+AADI + AM+ V K+L + KL ++MLLQ+HDE+V E+ + E Sbjct: 811 EAAERMALNAPIQGTAADIVKVAMLRVDKALTEAKLTSRMLLQVHDEIVLEIAKGERQQV 870 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +I+ H M A + LR PL V++ V +W+ Sbjct: 871 EEILRHEMANA----VELRAPLDVSVGVGKDWE 899 Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 94/254 (37%), Positives = 142/254 (55%), Gaps = 10/254 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NA+ GF +ML N+ ++ +HFAV F Sbjct: 16 LLLMDGHSLAYRAFFALPAENFTTAVGQPTNAVYGFMSML----ANTLRDEAPTHFAVAF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R + +P+YKANR K P+ Q+ L+ A + GFEADD+IAT Sbjct: 72 DVSRKTWRAQEFPEYKANRSKTPDEFKGQVELIGELLDAMHADRFAVDGFEADDVIATLA 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE GF V I++ D+D QL++ T LY T V E + E V++K+G+ P++ Sbjct: 132 TQAEAAGFEVLIVTGDRDSFQLITENVTVLYPTKGVSELTRFTPEKVVEKYGLTPQQYPD 191 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ A +K K +N ++ + + Sbjct: 192 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERAEEVKGKA-GQNFRDHLDAVK 250 Query: 242 LSRKLVMLRTDVPI 255 ++R L + DV + Sbjct: 251 MNRVLTEMVRDVEL 264 >gi|269123864|ref|YP_003306441.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112] gi|268315190|gb|ACZ01564.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112] Length = 861 Score = 280 bits (716), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 189/506 (37%), Positives = 282/506 (55%), Gaps = 38/506 (7%) Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539 GI+ + + DI+L S+ L + +S + ++A L + +EI K ++K + Sbjct: 377 GINFKNYFDILLASFTLGTDKSQK-LETMAFDKLGLSIEEIDKK-----ILNKFDATSFI 430 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD-----KPMIDVVSQMEITGIQIDQDL 594 E+ + +I + + + K + LL +LD K DV+ ME GI I+Q+ Sbjct: 431 EY--RKNRLITMTYAIFKLKEVFMDLLEKENQLDIYLEEKEFTDVLIYMEKQGIAINQNY 488 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 ++ + E+ K + +E IY SGE FN+SSPKQLG++LF + K K G + T A Sbjct: 489 FEKYNLELEKKIKDIENKIYIESGESFNISSPKQLGEVLFETMGIEGVKKNKRG-YSTDA 547 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRTQRVHTFYSLASTMTGRL 713 + LE + I + +LE+R+L K+KSTY + L IN R+HT Y+ T TGRL Sbjct: 548 EVLELLRDRGIKIAELLLEYRELVKLKSTYVEPLLKLSIN---GRIHTTYNQTGTATGRL 604 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 +S PNLQNIP +T G KIR FI+ KL+S DYSQIELR+LA I+K L +++ Sbjct: 605 SSSNPNLQNIPTRTYEGTKIREGFIASKGMKLVSFDYSQIELRVLAEISKDENLINAYKH 664 Query: 774 SLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 +LD+H + A +IF + + EKVS R AK INFS++YG +PF L+ +L+I S+A YI Sbjct: 665 NLDLHELTARKIFMLKDDEKVSKTQRNIAKVINFSVLYGKTPFGLSKELKITVSDAKLYI 724 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF +P + ++ +++GYVET FG R + +INS +I+ +R A+N I Sbjct: 725 NTYFKEYPKVRILLDDIIEKAKKDGYVETKFGTRRYVYDINSSNINIKEQAKRMAVNTVI 784 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE-----EEITTASQ-IIVH 946 QG+AA+I ++ M ++ L + + KMLLQ+HDEL+FEV E EEI Q IV Sbjct: 785 QGTAANIIKKVMKEIYDKLCNDNV--KMLLQVHDELIFEVREDINIFEEIRDIMQNTIVF 842 Query: 947 SMEKACLPKINLRVPLKVNIKVSNNW 972 V LKVN +NW Sbjct: 843 D-----------DVVLKVNGSEGDNW 857 Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 107/353 (30%), Positives = 176/353 (49%), Gaps = 40/353 (11%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + ++D S+ +YRA++A + R +G PV A+ GF L L E + + V Sbjct: 4 ILILDTSAIMYRAYFAL-MNFRNSNGEPVGAMLGFIKQLELALSYFSPEYVIAAKDV--- 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 A R EIY +YK NR +P+ L+ QL + + +GIP I+I +EADD+IA+ + Sbjct: 60 KRAELKRREIYKEYKENRSGMPDELVMQLDAIDGILEGYGIPIIKIPSYEADDVIASISK 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-----KI--DIEHVIKKWGIPPEKM 179 K+ + + I++ DKDL QL++P T + K++ KI + E VI+ G+ ++ Sbjct: 120 KYSKD-YEIIILTGDKDLAQLINPNTSIALLGKKDENEPYKIIENDEDVIEYLGVKSYQI 178 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L L GDS D IPG+ GIG KT A L+ EY N++NI N IK +++ I+ + Sbjct: 179 KDLFGLIGDSSDGIPGVLGIGPKTGAKLIAEYDNIDNIYANIDNIKGALQKK-IIASKDL 237 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 A +SR+L + ++ I + +E + +K +F KL + + Y+ Sbjct: 238 AYISRELATVFDELDIDLNIED------------AKIKEKDFDKL-SEIYLKYEL-RKEY 283 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFL 352 E +V D + D I ++ SL+D +KINS ++L Sbjct: 284 EKLVKD-------------KPKMDLKINEIEYPSLNDFITKINSVNEEISIYL 323 >gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3] gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4] Length = 892 Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 170/500 (34%), Positives = 281/500 (56%), Gaps = 18/500 (3%) Query: 481 ISMRGFE------DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKIS 534 ++ RG+E D L SY+L R +H + L+ E+ + ++ +D Sbjct: 398 LAERGWEVAGLTCDTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAM-LDFGE 456 Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDL 594 D + ++E + + +L ++ ++ + ++ + + ME GI D D+ Sbjct: 457 DHFAE--SMERAVAVTRLADVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIAADMDI 514 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 + + +E + + EE ++ +GEK NLSSPKQL +LF KL P +TK+G + T A Sbjct: 515 FEGLRSEFDERVTRAEEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKTRRTKSG-YTTDA 573 Query: 655 QDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 L + ++P + ++LE R K++ T D L I + RVHT Y +TGRL Sbjct: 574 DALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHTTYMQTVAVTGRL 631 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 +S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH++ L F+ Sbjct: 632 SSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQ 691 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + D H + A+ +FGV E VS R K +N+ + YG+S + L+ QL++ EA + + Sbjct: 692 SGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELM 751 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R++ ERAA+NAPI Sbjct: 752 ADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPI 811 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 QGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E +I+ ++M A Sbjct: 812 QGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIVTNAMGHA- 870 Query: 953 LPKINLRVPLKVNIKVSNNW 972 ++L VPL V+I V +W Sbjct: 871 ---MDLSVPLTVSIGVGRSW 887 Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 104/311 (33%), Positives = 156/311 (50%), Gaps = 13/311 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 9 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 65 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALHIVHLSKENYEADDILATLS 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ + P + Sbjct: 125 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVSPARYPE 184 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A +K K ++ ++ + Sbjct: 185 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298 +RKL L D+ + + L L + + LEF L +RV AT D D + Sbjct: 244 RNRKLNALVRDLDLDVTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 303 Query: 299 IEPVVLDINTT 309 L+I+ T Sbjct: 304 EVDDTLEISGT 314 >gi|237751826|ref|ZP_04582306.1| DNA polymerase I [Helicobacter bilis ATCC 43879] gi|229373192|gb|EEO23583.1| DNA polymerase I [Helicobacter bilis ATCC 43879] Length = 1102 Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 173/512 (33%), Positives = 278/512 (54%), Gaps = 13/512 (2%) Query: 465 IGHNIKYD-KLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 IGHNIK+D + H +GI + +D ML+++ LD S + ++ +K ++ Sbjct: 600 IGHNIKFDLHIAWHNFGIKPKHTPQDSMLLAW-LDDPSQSVSLDNLMKKHFNHNMIAFSD 658 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 D I +A E++ QL+ + L L + + L+ P I + Sbjct: 659 IVPKKATFDSIDIKTASNYAAEDAAATFQLYFYFKNTL-YPHLFTLAKDLEFPFIRTLCA 717 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI I+ K + S L L++ IY+ +G FNL+SPKQ+ +ILF LK + Sbjct: 718 MEDCGIAINYSYFKNLKTTFSHTLQQLQQEIYEKAGVSFNLNSPKQVAEILFDTLKLDTK 777 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 K K+G + T L + +P++ +LE+R++ K+ STY + + + K R++T Sbjct: 778 RKGKSG-YSTDEATLLALK-DSHPVVPLLLEYREIFKLFSTYIEPILK-LGKNENRIYTT 834 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 + T TGRL+S PNLQNIP+++++G+ IR+ F+S KL+S DYSQIELR+LAH + Sbjct: 835 FLQTGTNTGRLSSKSPNLQNIPVRSEMGRSIRKGFVSRDGYKLLSLDYSQIELRLLAHFS 894 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 L + F N+ DIH A +F + + S +R AK+INF +IYG+ +L+ L Sbjct: 895 GDKVLLESFHNNADIHAETAKLLFKDSNKDFS-LLRSIAKSINFGLIYGMGARKLSQTLN 953 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 I ++EA YI+ YF FP + +++E K+ + +NGY T+ GR+ ++D S +R Sbjct: 954 ITQTEAKQYIEDYFATFPSVKQFLESQKDSILKNGYSSTLLGRKRYFD-FFSATEFMRAN 1012 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 R +N QGSAAD+ + +M ++K +E MLLQ+HDEL+FE+ + I + S+ Sbjct: 1013 FLREGVNTIFQGSAADLIKLSMNEIYKKIESLDNDCFMLLQVHDELIFEIKDSIIESLSK 1072 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME L+VPL N+ + N W E Sbjct: 1073 ELKEIMENI----YKLKVPLVCNLSIGNTWAE 1100 Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 94/253 (37%), Positives = 139/253 (54%), Gaps = 14/253 (5%) Query: 9 LVDGSSFIYRAFYATP-LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 LVD F +R++YA P L + KH P + + GF +++ L KE S + Sbjct: 10 LVDTFGFFFRSYYALPPLHNSKH--FPTSLLTGFATLIFNLY----KEHKDSCIIFTLEG 63 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 R E YP YKANR + P+ LL QLP+ + G+P + +QG+EADD IAT + Sbjct: 64 GGTNRRKEFYPQYKANRKESPQDLLAQLPVAIEWLEKMGLPTLSLQGYEADDCIATLATL 123 Query: 128 AEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTG 187 A+K+G+ IIS DKDL QL+S ++D K++ I + +K+G+ P + Q++ G Sbjct: 124 AKKDGYETQIISHDKDLYQLISEGIYIFDYAKKQAITQKECYEKFGVLPNDFIMYQSIVG 183 Query: 188 DSIDNIPGIPGIGYKTAALLLQEYGNLENI-------LINASRIKQKKRRENILEYAETA 240 DS DN+PGI GIG K A +L + +LE++ N + K+ I E+ E A Sbjct: 184 DSSDNVPGIKGIGPKGAQSILAHFKSLESLYESIEKDYENIVSLLGKRTAGLIKEHKEQA 243 Query: 241 RLSRKLVMLRTDV 253 +SR LV LRTD+ Sbjct: 244 FISRNLVTLRTDL 256 >gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14] gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14] Length = 889 Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 168/513 (32%), Positives = 278/513 (54%), Gaps = 12/513 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K VL +G S+ G D L +Y++ GR S + +++ L Y +E+ Sbjct: 382 KVFHDAKGAMRVLAEHGWSVDGVRMDTALAAYLVKPGRRSFALDALS---LEYLHRELAP 438 Query: 523 SRKSSIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + + +D + E + + IL L + +L + ++ P +++ Sbjct: 439 AAAADGQLAFGADEAAEAEMLMIQARSILDLGEVFEGRLEEVGAADLLRDMELPTSALLA 498 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +ME GI D+ L+ + + + + + +G +FNL SPKQL ++LF +L P Sbjct: 499 RMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELALPK 558 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG DN + +L R+ +K++ T + L I R+HT Sbjct: 559 TKKTKTGYTTDADALAWLAAQTDNELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIHT 616 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQIELR++AH Sbjct: 617 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAH 676 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ L + F + D+H A+++FGV+ V +MRR K +++ + YG+S F L+ Q Sbjct: 677 LSEDAGLIEAFTSGEDLHTTAASQVFGVDRSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 736 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I +EA + YF RF G+ +Y+ + + R GY T+FGRR + ++NS R Sbjct: 737 LNIEAAEARALMDAYFERFGGVRDYLRRAVDEARATGYTATLFGRRRYLPDLNSDNRQRR 796 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQG+AADI + AM++V ++L + L ++MLLQ+HDE+V E+ E Sbjct: 797 EAAERMALNAPIQGTAADIVKIAMLNVDRALREADLKSRMLLQVHDEIVLEIAPGERAAT 856 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +I+ M A + LR PL V++ V +W+ Sbjct: 857 EEIVRREMSGA----VQLRAPLDVSVGVGPDWE 885 Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 101/254 (39%), Positives = 147/254 (57%), Gaps = 10/254 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 + L+DG S YRAF+A P + G P NAI GF +ML N+ ++ +HFAV F Sbjct: 1 MMLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDEEPTHFAVAF 56 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R+E + +YKANR K P+ Q+ L+ A ++GFEADDIIAT Sbjct: 57 DVSRKTWRSEEFTEYKANRSKTPDEFKGQVQLIGELLDAMHAERFAVEGFEADDIIATLA 116 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EGF V I++ D+D QLVS TT LY T V E + E V++K+G+ P + Sbjct: 117 TRAEAEGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRYTPEKVVEKYGLTPAQYPD 176 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ A +K K +N+ ++ E+ + Sbjct: 177 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERADEVKGKA-GQNLRDHLESVK 235 Query: 242 LSRKLVMLRTDVPI 255 L+R+L L +V + Sbjct: 236 LNRRLTELERNVEL 249 >gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 537 Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 153/390 (39%), Positives = 238/390 (61%), Gaps = 7/390 (1%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLD-SGRSS-HD 504 +I + + + K+GH++K+ +++L R+ I + G D ML SY+LD G++ H+ Sbjct: 116 DIDAVMGPLLADPELPKVGHDVKFCEVILLRHRIGLVGVSFDTMLASYLLDPEGKNQLHE 175 Query: 505 IASIAQKWLSYTRKEILKSRKSSI--PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 +A T E+ R+ +D+I + + ++V L L LRP+L V Sbjct: 176 LAERELGAKMQTLDEVAPKRRGQAQRALDEIELGEASSYGAAFADVALSLTDRLRPRLRV 235 Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 EKL + +++ P+ V+++ME+TG+ +D L Q+ A+++ L +LE+ ++ G N Sbjct: 236 EKLEDLLVQIELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREIVGHDIN 295 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 L+SPKQL +LF +LK S KTKTG ++T D+ + ++P +LE R ++K+K Sbjct: 296 LASPKQLEAVLFDELKLRSQRKTKTG--RSTDADVLEALSEEHPFPGVVLEHRAIAKLKG 353 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D+LP +N T R+HT + A TGRL+S +PNLQNIPI+T+LG+ IRRAF++PP Sbjct: 354 TYVDALPRLVNPGTGRIHTRWGQAVAATGRLSSQDPNLQNIPIRTELGRMIRRAFVAPPG 413 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 ++SADYSQIELR+LAH++K L F D+H A EIFGV+ V+ +MRR +K Sbjct: 414 SVIVSADYSQIELRVLAHLSKDPVLVDAFRAGQDVHVRTAMEIFGVDQAGVTAEMRRRSK 473 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYI 832 TINF +IYG+ LA +L I R+EAA +I Sbjct: 474 TINFGVIYGMGESALAKRLDISRAEAARFI 503 >gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] Length = 888 Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 171/521 (32%), Positives = 279/521 (53%), Gaps = 28/521 (5%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K V +G ++ G D L +Y++ GR S D+ +++ L Y +E+ Sbjct: 381 KVFHNAKGAMRVFAEHGWTIEGVTMDTALAAYLVKPGRRSFDLDALS---LEYLHRELAP 437 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + +D + A+ + IL L +L + ++ P +++ Sbjct: 438 AAAPDGQLAFGADDGAEAEALMVQARAILDLGEAFEGRLAEVGAADLLRDMELPTSALLA 497 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +ME GI D++ L+ + + + + + +G +FNL SPKQL ++LF +L P Sbjct: 498 RMERHGIAADREHLQAMEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELALPK 557 Query: 642 GAKTKTG--------QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 KTKTG W T D E P+I +L R+ +K++ T + L I Sbjct: 558 TKKTKTGYTTDADALAWLATQTDNEL------PVI--MLRHREQAKLRVTV-EGLIKTIA 608 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQ 752 R+HT ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQ Sbjct: 609 A-DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLLTADYSQ 667 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELR++AH+++ L + F + D+H AA++F V V +MRR K +++ + YG+ Sbjct: 668 IELRVMAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAYGL 727 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S F L+ QL I +EA + YF RF G+ +Y+ + + R GY T+FGRR + ++ Sbjct: 728 SAFGLSQQLNIEAAEARALMDAYFERFGGVRDYLRRVVDEARATGYTATLFGRRRYLPDL 787 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 NS R ER A+NAPIQG+AADI + AM++V ++L + L ++MLLQ+HDE+V E+ Sbjct: 788 NSDNRQRREAAERMALNAPIQGTAADIVKIAMLNVDRALREADLRSRMLLQVHDEIVLEL 847 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E +++ M A + LRVPL V++ +W+ Sbjct: 848 APGERAAVEELVRREMSTA----VELRVPLGVSVGAGPDWE 884 Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/254 (38%), Positives = 144/254 (56%), Gaps = 10/254 (3%) Query: 8 FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+DG S YRAF+A P + G P NAI GF +ML N+ ++ +HFAV FD Sbjct: 1 MLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDESPTHFAVAFD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 T+R+E + +YKANR K P+ Q+ L+ A ++GFEADD+IAT Sbjct: 57 VSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAQRFAVEGFEADDVIATLAT 116 Query: 127 IAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVCL 182 AE EGF V I++ D+D QLVS TT LY T V E + E V +K+G+ P + Sbjct: 117 QAEAEGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPDF 176 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD DN+PGIPG+G KTAA + ++G+ ++ +K K +N+ ++ E+ +L Sbjct: 177 AALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVDEVKGKA-GQNLRDHLESVKL 235 Query: 243 SRKLVMLRTDVPIT 256 +R+L L V ++ Sbjct: 236 NRRLTELERRVELS 249 >gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] Length = 910 Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 154/392 (39%), Positives = 238/392 (60%), Gaps = 9/392 (2%) Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME GI D D+ + + +E + + EE ++ +GEK NLSSPKQL +LF KL P Sbjct: 521 MERAGIAADMDIFEGLRSEFDERVTRAEEAAWEAAGEKINLSSPKQLQGVLFDKLDMPKT 580 Query: 643 AKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 +TK+G + T A L + ++P + ++LE R K++ T D L I + RVHT Sbjct: 581 RRTKSG-YTTDADALAGLYETTEHPFLAHLLEHRDAIKLRQT-VDGLLKEI-RDDGRVHT 637 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 Y +TGRL+S +PNLQNIP++T+ G++IR F+ + L+SADYSQIE+RI+AH Sbjct: 638 TYMQTVAVTGRLSSKDPNLQNIPMRTEEGRRIREGFVVGEGYESLLSADYSQIEMRIMAH 697 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L F++ D H + A+ +FGV E VS R K +N+ + YG+S + L+ Q Sbjct: 698 VSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQ 757 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L++ EA + + YF RF +HEY+E+ + R+ GY ET+ GRR + ++ S R Sbjct: 758 LKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRR 817 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ++ ERAA+NAPIQGSAAD+ + AM++ + L + L +++LLQ+HDEL+ EV + E Sbjct: 818 DMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKV 877 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +I+ ++M A ++L VPL V+I V +W Sbjct: 878 REIVTNAMGHA----MDLSVPLTVSIGVGRSW 905 Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 104/311 (33%), Positives = 156/311 (50%), Gaps = 13/311 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFYA P+ + G NA+ GF ML LL+N + +H AV + Sbjct: 27 LMVLDGHSMAFRAFYALPVENFTTSTGQHTNAVHGFVAMLINLLRNEKP----THVAVAW 82 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR Y +YKA R IP Q+ L++ A I + + +EADDI+AT + Sbjct: 83 DLAGGTFRTTEYSEYKAGRAAIPPEFPGQIDLIKEVLDALHIVHLSKENYEADDILATLS 142 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKMVC 181 A EGF ++S D+D MQLV+ T LY ++ E V +K+ + P + Sbjct: 143 TRATTEGFKTLLVSGDRDAMQLVNDQVTVLYPRKGVSDLARMTPEAVEEKYLVSPARYPE 202 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G+S D++ G+PG+G KTA L Y LEN++ A +K K ++ ++ + Sbjct: 203 LAALVGESADHLLGVPGVGPKTAVKWLTAYDGLENLIRQADTVKGKA-GQSFRDHLDDVI 261 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV---ATTYDCDAAN 298 +RKL L D+ + + L L + + LEF L +RV AT D D + Sbjct: 262 RNRKLNALVRDLDLDVTLAELARHPWDPKATRAVFDTLEFRTLWDRVRALATESDADGVD 321 Query: 299 IEPVVLDINTT 309 L+I+ T Sbjct: 322 EVDDTLEISGT 332 >gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162] gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162] Length = 917 Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 187/552 (33%), Positives = 297/552 (53%), Gaps = 42/552 (7%) Query: 444 TLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE------DIMLMSYVLD 497 TLT + L + + K H K+ +H G+ RG+E D + +Y++ Sbjct: 384 TLTPHDEAALGAWLADATRPKAVHEAKW---AMH--GLESRGWELGGLTSDTAIAAYLVR 438 Query: 498 SGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLL 556 G+ S ++ ++ ++L R E + + + D E A + +L Sbjct: 439 PGQRSFNLDDLSVRYLHRELRVESAAGDDTQLSLLDDPDDSAAEKAQQQ---------IL 489 Query: 557 RPKLIVEKLLHVYERLDK------------PMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 R + +V+ + E L+K P++ V+ ME TGI +D D L+ + ++ S Sbjct: 490 RARAVVDLAAALDEELEKIESKPLLEEMELPLLRVLGVMEATGIAVDTDHLESLHSDFSD 549 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664 + + E ++ GE+ NL SPKQL ILF KL P KTKTG A LE + + Sbjct: 550 RIRAAEAAAFEEIGEQINLGSPKQLQVILFEKLGLPKTKKTKTGYTTDAAA-LEALYEKE 608 Query: 665 -NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 +P ++ +LE R +++K T L + R+H+ ++ TGRL+S +PNLQNI Sbjct: 609 PHPFLQYLLEHRDATRLKVTVEGLLKAVASD--GRIHSTFNQTVAATGRLSSTDPNLQNI 666 Query: 724 PIKTDLGQKIRRAFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 P++T+ G++IR AF++ + L++ADYSQIE+RI+AH++ L + F D+H V Sbjct: 667 PVRTEAGRQIRHAFVAGEGYETLMTADYSQIEMRIMAHLSSDEGLIEAFNTGEDLHNFVG 726 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 A+ FGV I++V+P MRR K +++ + YG+S F LA QL+I R EA D ++ YF RF G+ Sbjct: 727 AKAFGVPIDEVTPDMRRRVKAMSYGLAYGLSAFGLAAQLKISRDEAKDQMEAYFARFGGV 786 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 +Y++ +N Y ETIFGRR + ++ S R ER A+NAPIQGSAADI + Sbjct: 787 RDYLQDVVTEATRNEYTETIFGRRRYLPDLTSTNRMRRESAERMALNAPIQGSAADIIKV 846 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI++ K + L ++MLLQ+HDELV EV E +++ +M A L VPL Sbjct: 847 AMINLDKQIRAAGLTSRMLLQVHDELVLEVAAGERDELEKLVRDTMGTAA----ELSVPL 902 Query: 963 KVNIKVSNNWQE 974 +V++ +W + Sbjct: 903 EVSVGYGRSWDD 914 Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 112/294 (38%), Positives = 162/294 (55%), Gaps = 18/294 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + L+DG S +RAF+A PL R G P NA+ GF +ML KLL KE + A Sbjct: 26 MLLIDGHSMAFRAFFALPLDGGRFRTKSGQPTNAVYGFTSMLIKLL----KEEAPGYVAA 81 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E+YP+YKA R P+ Q+ +V+ A GIP + +G+EADDIIAT Sbjct: 82 AFDVSRQTFRAEMYPEYKAQRSSAPDDFRGQVDVVKDVLAAMGIPTMAQEGYEADDIIAT 141 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY---DTVKEEKIDIEHVIKKWGIPPEKM 179 T A+++GF V I++ D+D +QLV+ T LY + E V K+G+ P + Sbjct: 142 MTTRAQEQGFDVLIVTGDRDALQLVNEHVTVLYPRKGVSDLTRFTPEEVDAKYGLTPSQY 201 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---KRRENILEY 236 AL GD DN+PGIPG+G KTAA ++EYG+LE ++ N ++K K REN+ Sbjct: 202 PDYAALRGDPSDNLPGIPGVGEKTAAKWIREYGSLEGLVENVDKVKGKVGDSLRENLA-- 259 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 T +L+R++ + D+ + + L L+ N + LEF L +R+ T Sbjct: 260 --TVQLNRQITEMVKDMALPYEPQDLALQPWNREAIHQLFDDLEFRVLRDRIFT 311 >gi|311064149|ref|YP_003970874.1| DNA polymerase I [Bifidobacterium bifidum PRL2010] gi|310866468|gb|ADP35837.1| PolA DNA polymerase I [Bifidobacterium bifidum PRL2010] Length = 944 Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 163/529 (30%), Positives = 278/529 (52%), Gaps = 13/529 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQK 511 L++F + + H K +L G+ + + D L Y++ + + A Sbjct: 417 LQRFLDGHADRIVVHGYKEQSHILASLGLDLAEPWFDTKLAGYLVQPDYHADSLEQAASH 476 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 +L + + + D Q + + ++ L +L K+ + + + Sbjct: 477 FLQLQLDNADDVAQGQLDLSGDVDPADQRKDLLHMAMVRALADMLAAKIDEREQFRLLQS 536 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ V+ ME G +D L ++ + + +E + +G + NL SPKQL Sbjct: 537 IELPVSHVLFGMEQVGASVDFMRLTEMRDRFAVDARDAQETAWQFAGSRVNLQSPKQLQA 596 Query: 632 ILFTKLKFPSGAKTKTGQWKTTA---QDLEQINCGD---NPIIKNILEWRQLSKIKSTYA 685 +LF + KTK+G + T A QDL + G+ N + +L R+ +K+K Sbjct: 597 VLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLKQI-V 655 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 SL + +N R+HT + TGRL+S++PNLQNIP + G++IR AF+ + Sbjct: 656 QSLIDAVNPDDGRIHTTFEQTVAATGRLSSVDPNLQNIPNRNAEGREIRSAFVPGEGYES 715 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L+S+DYSQ+ELRI+A ++ L + F + D H+ VA+ ++G+ ++ ++P R H K + Sbjct: 716 LLSSDYSQVELRIMADLSGDDALIEAFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAM 775 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 ++ + YG+S + LA QL+I EA +YF F +HEY+E R+ GY ET+FG Sbjct: 776 SYGLAYGLSTYGLAQQLKISPGEADRLKSQYFATFGKVHEYLESLVAGAREKGYTETMFG 835 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR ++ + SP +IR+ ER A+NAPIQGSAADI + AMI +L K+ ++++LQI Sbjct: 836 RRRYFPGLQSPNRNIRDAAERGALNAPIQGSAADIMKIAMIHASDALAKAKVRSRIILQI 895 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 HDELV E+ E+ + ++ +ME A ++L VPL V+ + ++WQ Sbjct: 896 HDELVVEIAPGEVEQVTGLVRDAMEHA----VDLAVPLDVSTGIGSDWQ 940 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 107/282 (37%), Positives = 153/282 (54%), Gaps = 14/282 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P + G NA+ GF ML ++L + + + H AV F Sbjct: 16 LLVVDGHSLAFRAFFALPAENFSTQAGQATNAVWGFATMLSQVLDSEKPD----HLAVAF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNE+ P YK R PE LL QLPL++ A G+ +E QG+E DDIIAT Sbjct: 72 DMKGGTFRNEMLPQYKGTREAAPEDLLTQLPLIQKMLTALGVTYVEKQGYEGDDIIATLA 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + E+ G+ ++S D+D QL+ T LY D++H V K+ + P + Sbjct: 132 AMGERSGYDTLVLSGDRDAFQLIDERVTVLY--PGHHFKDLKHMTPQAVEDKYHVGPAQY 189 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DNIPG+PG+G AA + +YG LE I+ +A I KK E++ E E Sbjct: 190 PDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLEGIIEHADEIGGKK-GESLRENIEQ 248 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 +L+RK+ LR DV + I +E L + + L +LEF Sbjct: 249 VKLNRKVNALRRDVDLGIGIEDLTFGEVDADALSELFTSLEF 290 >gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] Length = 925 Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 158/434 (36%), Positives = 259/434 (59%), Gaps = 10/434 (2%) Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 +++ L+L L KL L +YE L+ P++ ++ ME GI+++++ + + + Sbjct: 496 DHAEAPLELAEELAKKLDKAGLYSIYENLEIPLVPILFGMERAGIKVNRERMTALRDSTA 555 Query: 604 KNLL-SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-N 661 + L +EE + K NL SPKQL ++LF KL+ KTKTG + T A+ +E++ Sbjct: 556 EKLAKEVEEARALVDMPKLNLGSPKQLQEVLFDKLELSKTKKTKTG-YSTAAKAIERLAE 614 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 +P + ++L R+ K ST D L I R+HT ++ +T TGRL+S +PNLQ Sbjct: 615 KHPHPFLDHLLAHREYQKRVSTL-DGLIKAIAS-DGRIHTTFNQTATATGRLSSTDPNLQ 672 Query: 722 NIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 NIP++T+ G++IR AF+ + L++ADYSQIE+R++AH ++ L + + + D+H Sbjct: 673 NIPVRTEEGRQIRAAFVPGEGYEALLTADYSQIEMRVMAHFSQDRGLIEAYRSGEDLHNF 732 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 V +++F V + +V+P++RR K +++ ++YG+S + L+ QL I EA + +YF RF Sbjct: 733 VGSQVFDVPVNEVTPELRRRVKALSYGLVYGLSEYGLSQQLDISVREAKKIMVKYFERFG 792 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 G+ Y+ + + R++ Y T+ GRR + ++ S R ERAA+NAPIQG+AADI Sbjct: 793 GVRRYLNEVVDRARKDEYTSTMLGRRRYLSDLASLNRQARENAERAALNAPIQGTAADII 852 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 + AMI V +L+ KLA+++LLQ+HDEL EV E+ II M++A I L V Sbjct: 853 KVAMIRVDAALKKEKLASRVLLQVHDELDVEVANGELEQVRGIIQREMDEA----IELAV 908 Query: 961 PLKVNIKVSNNWQE 974 PL+V + V +W E Sbjct: 909 PLEVGMAVGADWNE 922 Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 94/270 (34%), Positives = 143/270 (52%), Gaps = 23/270 (8%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAFYA P G NA+ GF +ML LL+ + +H A F Sbjct: 14 LLLLDGHSLAFRAFYALPADKFTDSSGQHTNAVYGFISMLVTLLEQEK----PTHSAAAF 69 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR+E + DYKA RP+ P Q+ L+R A + FGI ++ + +EADD+IAT Sbjct: 70 DLAGPTFRSEKFADYKAQRPETPPEFKGQIELIRQALETFGITTVDYKRYEADDVIATLA 129 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 ++GF I + D+D +QLV+ + T++ + E V +K+G+ P + Sbjct: 130 TQGHEQGFDTYICTGDRDSLQLVTDDVTVLYTLRGVSNLARFTPEAVEEKYGVTPTQYPD 189 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN----ASRIKQKKRRENILEYA 237 L AL GD+ DN+PG+PG+G KTA + +YG+L N++ N ++ RR+ Sbjct: 190 LAALRGDTSDNMPGVPGVGPKTAQKWINKYGSLSNLIDNIDDIGGKVGDALRRD-----I 244 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDC 267 +T +R+L + D+PI EDC Sbjct: 245 DTVIQARELTEMVRDLPIKCS-----PEDC 269 >gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379] gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] Length = 903 Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 169/513 (32%), Positives = 280/513 (54%), Gaps = 12/513 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K VL +G + G D L +Y++ GR S + ++A ++L +E+ Sbjct: 396 KVLHNAKNVMRVLPEHGWQLEGVTMDTALAAYLVKPGRRSFALDALAVEYLG---RELAP 452 Query: 523 SRKSSIPIDKISDSQVQEHAI-ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + + +D + ++ A+ + +L L +L + ++ P +++ Sbjct: 453 AAAADGQLAFGADDRAEQDALMAQARAVLDLGDAFTTRLKEVGAAELLHDMELPTSILLA 512 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ++E GI D+ L+ + + + + + + G +FNL SPKQL +ILF +L P Sbjct: 513 RLERHGIAADRAHLEGMEQQFAGTVQQAVKEAHAAVGREFNLGSPKQLQEILFNELGLPK 572 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG ++ + +L R+ +K++ T + L I R+HT Sbjct: 573 TKKTKTGYTTDADALAWLAAQTEHELPVLMLRHREQAKLRVTV-EGLIKTIAT-DGRIHT 630 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQIELR++AH Sbjct: 631 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAH 690 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ L + F + D+H VA+++FGV + V +MRR K +++ + YG+S F L+ Q Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 750 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I +EA + YF RF G+ +Y+ + R GY ETI GRR + ++NS R Sbjct: 751 LNIDPAEARVLMDTYFERFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRR 810 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQG+AADI + AM+ V K+L + L ++MLLQ+HDE+V E+ + E Sbjct: 811 EAAERMALNAPIQGTAADIVKVAMLRVDKALTEAGLTSRMLLQVHDEIVLEIAKGERKQV 870 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +I+ H M A + LR PL V++ V +W+ Sbjct: 871 EEILRHEMANA----VELRAPLDVSVGVGKDWE 899 Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 94/254 (37%), Positives = 142/254 (55%), Gaps = 10/254 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NA+ GF +ML N+ ++ +HFAV F Sbjct: 16 LLLMDGHSLAYRAFFALPAENFTTAVGQPTNAVYGFMSML----ANTLRDEAPTHFAVAF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R + +P+YKANR K P+ Q+ L+ A + GFEADD+IAT Sbjct: 72 DVSRKTWRAQEFPEYKANRSKTPDEFKGQVELIGELLDAMHADRFAVDGFEADDVIATLA 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE GF V I++ D+D QL++ T LY T V E + E V++K+G+ P++ Sbjct: 132 TQAEAAGFEVLIVTGDRDSFQLITDNVTVLYPTKGVSELTRFTPEKVVEKYGLTPQQYPD 191 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ A +K K +N ++ + + Sbjct: 192 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERADEVKGKA-GQNFRDHLDAVK 250 Query: 242 LSRKLVMLRTDVPI 255 ++R L + DV + Sbjct: 251 MNRVLTEMVRDVEL 264 >gi|94269757|ref|ZP_01291549.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] gi|93451091|gb|EAT02034.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] Length = 352 Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 152/348 (43%), Positives = 214/348 (61%), Gaps = 8/348 (2%) Query: 629 LGDILFTKLKFPSGAKTK--TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 +G++L+ +LK P KTK TG + T ++LE++ + + ++ R LSK+KSTY D Sbjct: 8 MGEVLYERLKLPHARKTKGKTG-YSTDYRELERL-AAYHDLPAAVISHRNLSKLKSTYVD 65 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 L I+ RVHT ++ T TGRL+S PNLQNIPI+T G+++R AF++ + Sbjct: 66 KLATLIDPADGRVHTTFNQTVTATGRLSSSNPNLQNIPIRTPEGRRLRAAFVAAAEHLFL 125 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 +ADYSQI+LR+LAH + L + F + DIH AAEIF VN VS MRR AKTINF Sbjct: 126 AADYSQIDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINF 185 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 I+YG+S F LA QLR R EA +I RYF + G+H ++++ R++G+V T+ RR Sbjct: 186 GIVYGMSAFGLAEQLRCSRKEAQTFIDRYFELYQGVHRFMQEIVEQARRDGWVGTLLQRR 245 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 EINS R ER AIN PIQG+AADI + A I+ ++L + ++ LLQIHD Sbjct: 246 RPLPEINSGNKMRREFAERTAINTPIQGTAADIIKLAAIACDRALREADCRSEALLQIHD 305 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 EL+FEVP++E+ +I +ME+ + L VPL VN+K N E Sbjct: 306 ELIFEVPQDELAQVGPLIRQAMEEV----MELAVPLTVNLKSGPNLSE 349 >gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4] gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4] Length = 899 Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 174/505 (34%), Positives = 287/505 (56%), Gaps = 23/505 (4%) Query: 480 GISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539 G++M D+ L +Y++ G+ S+ +A + Q+ L E + K +D++ D++ Sbjct: 401 GVTM----DVALAAYLVRPGQRSYGLAELFQRHLRRELPEAEAAEKQLSLLDEVDDAEAA 456 Query: 540 EHAIENSNVILQLWLLLRPKLIVE-KLLH---VYERLDKPMIDVVSQMEITGIQIDQDLL 595 + A + + + + L +L VE + +H + ++ P++ V+++ME GI +D L Sbjct: 457 QRAADAAATRARAVVDLAERLDVELEQVHGATLMAEMELPLVPVLARMESIGIAVDASAL 516 Query: 596 KQVSAEIS-KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 + + + + + E + GE+ NL SPKQL +LF L P KTKT + T A Sbjct: 517 NGLRDDFADRGRQAAEAAYAAIGGEQINLGSPKQLQVVLFETLGMPKTKKTKT-GYTTDA 575 Query: 655 QDLEQI---NCGDNP---IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAST 708 + LE++ GD P ++ +L R+ +K+++T + + R R+HT ++ Sbjct: 576 KALEELLAKETGDTPGRAFLEALLLHRETTKMRTTVEGLIKTIGDDR--RIHTTFNQTVA 633 Query: 709 MTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPL 767 TGRL+S +PNLQNIP++T+ G++IR +F+ L++ADYSQIE+R++AH++ L Sbjct: 634 ATGRLSSTDPNLQNIPVRTEDGRRIRGSFVVGEGYDCLLTADYSQIEMRVMAHLSGDAGL 693 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F D+H V + FGV I++V+P++RR K +++ + YG+S F LA QL I + E Sbjct: 694 IEAFRTGEDLHSFVGSRAFGVPIDQVTPELRRRVKAMSYGLAYGLSAFGLAAQLGISQGE 753 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A + ++ YF RF G+ +Y++ R++GY ET+FGRR + E+NS R ERAA Sbjct: 754 AREQMEAYFSRFGGVRDYLQAVVEQARKDGYTETLFGRRRYLPELNSDNRLKRENAERAA 813 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +NAPIQG+AADI + AM+ V L L +++LLQ+HDELV EV E+ ++V Sbjct: 814 LNAPIQGTAADIIKAAMLKVDADLTARGLKSRLLLQVHDELVLEVAPGELDEVRGLVVDR 873 Query: 948 MEKACLPKINLRVPLKVNIKVSNNW 972 M A I L VPL V+ NW Sbjct: 874 MYSA----IELDVPLDVSTGTGPNW 894 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/262 (36%), Positives = 140/262 (53%), Gaps = 12/262 (4%) Query: 9 LVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 ++DG S +RAFYA P + G NA+ GF +M+ L+ E +H AV FD Sbjct: 1 MLDGHSLAFRAFYALPAENFSTASGQHTNAVYGFLSMVANLV----TEEEPTHLAVAFDV 56 Query: 68 PAVTF-RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 T R YP+YK+ R PE Q+ L++ A A + + ++G EADDIIAT Sbjct: 57 SRATLHRTAEYPEYKSTRSAAPEEFKGQIELIQEALAALRVRTLSLEGHEADDIIATLAT 116 Query: 127 IAEKEGFAVTIIST-DKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 A G A +I T D+D +QLVS T LY V E + E V K+G+ P + Sbjct: 117 GAAHSGDARILICTGDRDALQLVSDAVTVLYPVKGVSELARFTPEAVEAKYGVTPAQYPD 176 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 + AL GDS DN+PG+P +G KTAA + +YG+L ++ +A IK K E+ E+ + Sbjct: 177 VAALRGDSSDNLPGVPKVGDKTAAKWITQYGSLSELIAHADEIKGKV-GESFREHLPQVQ 235 Query: 242 LSRKLVMLRTDVPITIPLEHLI 263 L+R++ L D+ + + L L+ Sbjct: 236 LNRRITELTRDLDLGVELTDLV 257 >gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1] gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1] Length = 845 Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 162/458 (35%), Positives = 255/458 (55%), Gaps = 9/458 (1%) Query: 520 ILKSRKSSIPIDKISDSQVQEHAIENSN---VILQLWLLLRPKLIVEKLLHVYERLDKPM 576 +L + D+I + E A+ N L++ ++ +L LL + + L+ P+ Sbjct: 391 LLNPEERDYSFDRIFRTYAPEIAVHRENRAVAALKIGQMVEKRLDAAGLLGLMQELEMPL 450 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 + V+ +ME GI ID ++ K+L L +IY L+G++FN+ S +Q +LF + Sbjct: 451 VPVLCRMESAGIGIDLAAFDNFLRQVKKSLDDLTASIYSLAGKEFNIRSTQQTAQVLFDE 510 Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 L + KT G + T+ LE + D+ I+ IL++R L K++STY + LP ++ Sbjct: 511 LGLKARRKTPKGAYSTSNVVLESMRR-DHDIVDLILQYRTLEKLRSTYLEPLPRKVDV-G 568 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 R+HT ++ +T TGRL+S PNLQNIPIK + G ++R F K L++ADYSQIELR Sbjct: 569 GRLHTTFNQLATATGRLSSSNPNLQNIPIKGEFGPRMRACFKPSKGKLLVAADYSQIELR 628 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 ILAH++ L Q F + DIHR A +F +I++VS RR AKTINF ++YG+ P + Sbjct: 629 ILAHMSMDPNLLQAFGGNEDIHRRTAGLLFDKDIQEVSQDERRKAKTINFGLLYGMGPQK 688 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ +L I EA ++I YF + + ++ ++ + ++ GYV T+ GRR +INS Sbjct: 689 LSRELSISMEEAKEFISVYFSKLDRVRDFYQQIEEKAQEQGYVTTMAGRRRLLPDINSRN 748 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 +++ R A+N IQGSAAD+ ++AM++V E L + M+LQ+HDEL+ EV Sbjct: 749 TNMAQQARRTAVNTVIQGSAADVIKKAMLAVDSDSELRSLGSVMVLQVHDELLLEVDAPV 808 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 A + + M +L VPL V NW E Sbjct: 809 AQKAGERLARVMAGVE----SLEVPLLVEWGTGENWAE 842 Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 116/291 (39%), Positives = 159/291 (54%), Gaps = 9/291 (3%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K +FL+DGSSF+YRAFYA P L R DGLP NAI ML K+++ + E + Sbjct: 9 KNEPVFLIDGSSFLYRAFYAYPDLKRS-DGLPTNAIYIVIRMLLKIVKEEKPE----YMG 63 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 D TFR+E+Y YKA RP +PE L Q+ +R A + GIP QG EADD+IA Sbjct: 64 FFLDGKGPTFRHELYIPYKAQRPGMPEGLSAQIEPLREAVRILGIPEYTAQGLEADDLIA 123 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE--EKIDIEHVIKKWGIPPEKMV 180 YT I K V I+++DKDL QL+ L+D + E +D + ++ GI PE+ Sbjct: 124 GYTEIF-KSKHPVIIVASDKDLKQLLDDHVYLWDPGAKNAEILDCDGFRRETGIGPEQWP 182 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 QAL GDS DNIPGIPG+G KTA L+++ +LE + +K K+ +E + E+ + Sbjct: 183 DYQALVGDSSDNIPGIPGVGPKTALNWLKKFPSLEELQAGLDELKPKE-QEKLREHMDDV 241 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 L R+L L+ D LE L + L FL EF L N + + Sbjct: 242 FLYRRLTKLKPDCLSGAGLETLKTRPADPVELQKFLDEYEFKSLKNEIPGS 292 >gi|320093718|ref|ZP_08025583.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str. F0338] gi|319979339|gb|EFW10829.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str. F0338] Length = 936 Score = 278 bits (712), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 156/411 (37%), Positives = 234/411 (56%), Gaps = 15/411 (3%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P V++ ME GI +D L +S E+ ++ E + G + NLSSPKQL + Sbjct: 530 VEMPTAAVLAGMERVGIGVDSARLGALSDELGGDVERAREGALAVLGREVNLSSPKQLQE 589 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NCGDN-PIIKNILEWRQLSKIKSTY 684 +LF P +TKTG + T A+ L+ + GD + ++L R K+K Sbjct: 590 VLFEHFGLPRTRRTKTG-YTTNAEALQDLYAKTAERGGDGHEFLGHLLAHRDRIKLKQMV 648 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-K 743 DSL + R+HT +S + TGRLAS +PNLQNIP ++ G +IR F++ P + Sbjct: 649 -DSLIASVAD-DGRIHTTFSQVAAATGRLASADPNLQNIPARSADGMRIRGGFVAGPGFE 706 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 L+SADYSQIE+RI+AH+++ L F + D+HR +A+ +FG + +V+ Q R K Sbjct: 707 ALMSADYSQIEMRIMAHLSQDEGLIGAFNSGEDLHRTMASMVFGTPVAEVTAQQRSRIKA 766 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 ++ + YG+S + L+ QL IP EAA +RYF RF G+ +Y+E + R GY ET++ Sbjct: 767 TSYGLAYGLSKYGLSKQLGIPVPEAAALRERYFERFGGVRDYLESLVDQARSRGYTETMY 826 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + ++ S R + ERAA+NAPIQGSAADI + AMI V +L L +++L+Q Sbjct: 827 HRRRYLPDLGSDNRQRREMAERAALNAPIQGSAADIMKLAMIGVVGALGRAGLRSRVLVQ 886 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 IHDEL+ EV E + + M +LRVPL V++ V +WQE Sbjct: 887 IHDELLVEVAPGERERVEEAVRQEMAGVA----SLRVPLDVSVGVGPSWQE 933 Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 97/287 (33%), Positives = 149/287 (51%), Gaps = 10/287 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 + ++DG S YRAFYA P G NA+ GF +ML +LL+ R +H AV F Sbjct: 38 VLIIDGHSMAYRAFYALPADKFVTTTGRCTNAVYGFVSMLTRLLEQERP----THVAVAF 93 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR + YP+YK R PE Q+ L+ A GI ++ + +EADDI+AT Sbjct: 94 DLSRHSFRTDEYPEYKGTRDATPEEFKGQVELIGQVLGAMGITSLTKERYEADDILATVA 153 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVC 181 + G V ++S D+D Q V T LY ++D V K+G+PP + Sbjct: 154 RRGAEAGMRVLVVSGDRDSFQTVGERVTVLYPGTGPGDLRRMDPAAVEAKYGVPPHRYPE 213 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 + AL G++ DN+PG+PG+G KTAA + + L+N+L A + KR + + ++A+ R Sbjct: 214 VAALVGEASDNLPGVPGVGPKTAAQWIARFDGLDNLLARADEVG-GKRGQALRDHADEVR 272 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +R+L L D+ + + ++ L + + S ALEF L RV Sbjct: 273 RNRRLNRLVDDLDLGVGIDDLRRGPTDFAEIQSLFDALEFGSLRRRV 319 >gi|256379536|ref|YP_003103196.1| DNA polymerase I [Actinosynnema mirum DSM 43827] gi|255923839|gb|ACU39350.1| DNA polymerase I [Actinosynnema mirum DSM 43827] Length = 888 Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 151/395 (38%), Positives = 238/395 (60%), Gaps = 9/395 (2%) Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ++E GI +D + L + A + + ++ Y + G++ NL SPKQL +LF +L P Sbjct: 498 EIEGIGIAVDDEHLTGLEAHFAAGVKQAAQDAYAVIGKEINLGSPKQLQVVLFDELGMPK 557 Query: 642 GAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 KTKT + T A L+ + +P ++++L R ++++K+T D L + R+H Sbjct: 558 TKKTKT-GYTTDADALQSLFESTQHPFLQHLLAHRDVTRLKTT-VDGLLKAVAD-DGRIH 614 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759 T + TGRL+S +PNLQNIPI+TD G++IR F+ P +L++ADYSQIE+RI+A Sbjct: 615 TTFHQTIAATGRLSSTDPNLQNIPIRTDEGRRIREGFVVGPGYAELMTADYSQIEMRIMA 674 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H++ L + F + D+H VA++ F V +V+ + RR K +++ + YG+S + LA Sbjct: 675 HLSGDEGLIEAFRSGEDLHTFVASKAFSVPTGEVTAEQRRRVKAMSYGLAYGLSEYGLAQ 734 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QLRIP +EA + ++ YF RF G+ +Y++ R+ GY ETI GRR + ++NS Sbjct: 735 QLRIPAAEAREQMEAYFSRFGGVRDYLQSIVEEARKKGYTETILGRRRYLPDLNSDNRQR 794 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R + ER A+NAPIQGSAADI + AM+ V ++LE +L ++MLLQ+HDELV E+ + E Sbjct: 795 REMAERMALNAPIQGSAADIIKVAMLGVFQALEASELTSRMLLQVHDELVLEIADGERAA 854 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ M A L VPL+V++ V +W E Sbjct: 855 VESLVREHMGNA----FQLSVPLEVSVGVGRSWDE 885 Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 151/292 (51%), Gaps = 10/292 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + L LVDG S YRAF+A P + + G NA+ GF +ML LL++ + +H AV Sbjct: 7 SRLLLVDGHSMAYRAFFALPAENFQTATGQTTNAVYGFTSMLINLLRDEKP----THIAV 62 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E YP+YKA R + P+ Q+ L++ A IP + + FEADD+IAT Sbjct: 63 AFDVSRRTFRTEAYPEYKAGRSETPDEFRSQVSLIQDVLTALAIPFLSKENFEADDLIAT 122 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLY--DTVKE-EKIDIEHVIKKWGIPPEKM 179 A G V I + D+D +QLV+ T LY V E + E V++K G+PP Sbjct: 123 LATQATALGQKVLICTGDRDALQLVNDDITVLYPVKGVSELARYTPELVLEKQGVPPSLY 182 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 A+ GDS DN+P PG+G KT LL ++G+L ++ ++K K E++ Sbjct: 183 ADYAAIRGDSSDNLPNTPGVGPKTIVKLLGQFGDLSGLVEGVDQVKGKV-GESLRANLAN 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 L+R+L L DV + + E L + + + LEF L +R+ T Sbjct: 242 ILLNRQLTELVRDVELPLGPEDLAAKAWDRDAVHRLFDQLEFRVLRDRLFAT 293 >gi|310287301|ref|YP_003938559.1| DNA polymerase I [Bifidobacterium bifidum S17] gi|309251237|gb|ADO52985.1| DNA polymerase I [Bifidobacterium bifidum S17] Length = 943 Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 163/529 (30%), Positives = 277/529 (52%), Gaps = 13/529 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQK 511 L++F + + H K +L G+ + + D L Y++ + + A Sbjct: 416 LQRFLDGHADRMVVHGYKEQSHILASLGLDLAEPWFDTKLAGYLVQPDYHADSLEQAASH 475 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 +L + + + D Q + + ++ L +L K+ + + + Sbjct: 476 FLQLQLDNADDVAQGQLDLSGDVDPADQRKDLLHMAMVRALADMLAAKIDEREQFRLLQS 535 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ V+ ME G +D L ++ + + +E + +G + NL SPKQL Sbjct: 536 IELPVSHVLFGMEQVGASVDFMRLTEMRDRFAVDARDAQETAWQFAGSRVNLQSPKQLQA 595 Query: 632 ILFTKLKFPSGAKTKTGQWKTTA---QDLEQINCGD---NPIIKNILEWRQLSKIKSTYA 685 +LF + KTK+G + T A QDL + G+ N + +L R+ +K+K Sbjct: 596 VLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLKQI-V 654 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 SL + +N R+HT + TGRL+S++PNLQNIP + G++IR AF+ + Sbjct: 655 QSLIDAVNPDDGRIHTTFEQTVAATGRLSSVDPNLQNIPNRNAEGREIRSAFVPGEGYES 714 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L+S+DYSQ+ELRI+A ++ L + F + D H+ VA+ ++G+ ++ ++P R H K + Sbjct: 715 LLSSDYSQVELRIMADLSGDDALIEAFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAM 774 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 ++ + YG+S + LA QL+I EA +YF F +HEY+E R+ GY ET+FG Sbjct: 775 SYGLAYGLSTYGLAQQLKISPGEADRLKSQYFATFGKVHEYLESLVADAREKGYTETMFG 834 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR ++ + SP +IR+ ER A+NAPIQGSAADI + AMI +L K+ ++++LQI Sbjct: 835 RRRYFPGLQSPNRNIRDAAERGALNAPIQGSAADIMKIAMIHASDALAKAKVRSRIILQI 894 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 HDELV E+ E + ++ +ME A ++L VPL V+ + ++WQ Sbjct: 895 HDELVVEIAPGEAEQVTGLVRDAMEHA----VDLAVPLDVSTGIGSDWQ 939 Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 107/282 (37%), Positives = 152/282 (53%), Gaps = 14/282 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P + G NA+ GF ML ++L + + + H AV F Sbjct: 16 LLVVDGHSLAFRAFFALPAENFSTQAGQATNAVWGFATMLSQVLDSEKPD----HLAVAF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNE+ P YK R PE LL QLPL++ A G+ +E QG+E DDIIAT Sbjct: 72 DMKGGTFRNEMLPQYKGTREAAPEDLLTQLPLIQKMLTALGVTYVEKQGYEGDDIIATLA 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + E+ G+ ++S D+D QL+ T LY D++H V K+ + P + Sbjct: 132 AMGERSGYDTLVLSGDRDAFQLIDERVTVLY--PGHHFKDLKHMTPQAVEDKYHVGPAQY 189 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DNIPG+PG+G AA + +YG LE I+ +A I KK E++ E E Sbjct: 190 PDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLEGIIEHADEIGGKK-GESLRENIEQ 248 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 +L+RK+ LR DV + I +E L + + L LEF Sbjct: 249 VKLNRKVNALRRDVDLGIGIEDLTFGEVDADALSELFTNLEF 290 >gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826] Length = 878 Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 181/517 (35%), Positives = 282/517 (54%), Gaps = 27/517 (5%) Query: 465 IGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 IG N+KYD ++V + G++ F+D M+++++ D SS + ++A++ Y + Sbjct: 380 IGQNLKYDFEIVKNNLGLNPPANFKDTMILAWLSDP-NSSVGMDALAKRLYDYDTIKFED 438 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLL----LRPKLIVEKLLHVYERLDKPMID 578 K + ++A E++ + L+ + L P L+ +H + P I Sbjct: 439 VVKKGQTFGDVPLENAAKYAAEDAWITLKFYKTFQNTLDPNLLALADMHEF-----PFIL 493 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 + ME GI+I++ ++++ E L +L IY+LSGE FN++S KQLG ILF LK Sbjct: 494 TLFDMEQNGIKINEAKMQKLILENDTKLKALTSEIYELSGENFNINSVKQLGVILFEHLK 553 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK-RTQ 697 P+ KTKTG + E I+ +P++ IL +R+L K++STY + L K Sbjct: 554 LPTKKKTKTGYSTDESVLAELIDA--HPVVGKILAYRELYKLQSTYCEPLLALAKKDEGS 611 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 R++T + T TGRL+S PNLQNIP + L + +R F + + DYSQIELR+ Sbjct: 612 RIYTSFLQTGTSTGRLSSKNPNLQNIPARGSLAKDVRECFEAREGYSFVGLDYSQIELRL 671 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 LAH ++ L + F+N DIH A IFG + Q R AK+INF +IYG+ +L Sbjct: 672 LAHFSRDPALLEAFKNDEDIHARTAISIFGSS----DGQNRAVAKSINFGLIYGMGSSKL 727 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 A Q+ I R+EA +YI+RYF F I E++E K + G+V+T+ GR+ ++D S Sbjct: 728 ANQVNITRAEAKEYIERYFKAFATIKEFLESIKISAKNEGFVQTLLGRKRYFD-FKSATP 786 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 + ER A+N QGSAAD+ + AM+ V +L+ + MLLQIHDEL+FEV +E Sbjct: 787 MQMAMFEREAVNTVFQGSAADLVKMAMVKVRANLDKN---ASMLLQIHDELIFEVKDEFA 843 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + +ME+ L VPLK ++ ++ NW E Sbjct: 844 QEFGRATQKTMEEI----YTLNVPLKTSLNIAKNWGE 876 Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 87/256 (33%), Positives = 133/256 (51%), Gaps = 6/256 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R +YA L + DG P I+GF N + L + E + + D Sbjct: 4 LTIIDTFGFFFRLYYAMSGL-KNRDGKPSGMISGFANFIASL----KDEYQSDYLIFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 T R+EI +YKANR + P L QLP+ + G+ ++ +G+EADDIIA+ Sbjct: 59 SKGKTLRHEILGEYKANRSEPPAQLKEQLPVCIDMIEKMGLYSLSREGYEADDIIASTVK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 I + + V I++ DKDL QL+ +Y + D +K+G+ P ++ A+ Sbjct: 119 ICKDKDIFVRIVTHDKDLYQLIEDGKVSIYSPQSKIDHDSASCFEKYGVYPAQVRDFLAI 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ GIG A LL EYG+LE I N + I+ ++ + + + A LS+K Sbjct: 179 AGDSSDNIPGVKGIGAVGAKKLLAEYGSLEGIYENLALIRNERTKNMLAAARDEAFLSKK 238 Query: 246 LVMLRTDVPITIPLEH 261 L L D ++ LEH Sbjct: 239 LATLFDDAITSLDLEH 254 >gi|224282847|ref|ZP_03646169.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] gi|313140006|ref|ZP_07802199.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] gi|313132516|gb|EFR50133.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] Length = 943 Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 163/529 (30%), Positives = 277/529 (52%), Gaps = 13/529 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQK 511 L++F + + H K +L G+ + + D L Y++ + + A Sbjct: 416 LQRFLDGHADRIVVHGYKEQSHILASLGLDLAEPWFDTKLAGYLVQPDYHADSLEQAASH 475 Query: 512 WLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYER 571 +L + + + D Q + + ++ L +L K+ + + + Sbjct: 476 FLQLQLDNADDVAQGQLDLSGDVDPADQRKDLLHMAMVRALADMLAAKIDEREQFRLLQS 535 Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P+ V+ ME G +D L ++ + + +E + +G + NL SPKQL Sbjct: 536 IELPVSHVLFGMEQVGASVDFMRLTEMRDRFAIDARDAQETAWQFAGSRVNLQSPKQLQA 595 Query: 632 ILFTKLKFPSGAKTKTGQWKTTA---QDLEQINCGD---NPIIKNILEWRQLSKIKSTYA 685 +LF + KTK+G + T A QDL + G+ N + +L R+ +K+K Sbjct: 596 VLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLKQI-V 654 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 SL + +N R+HT + TGRL+S++PNLQNIP + G++IR AF+ + Sbjct: 655 QSLIDAVNPDDGRIHTTFEQTVAATGRLSSVDPNLQNIPNRNAEGREIRSAFVPGEGYES 714 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 L+S+DYSQ+ELRI+A ++ L + F + D H+ VA+ ++G+ ++ ++P R H K + Sbjct: 715 LLSSDYSQVELRIMADLSGDDALIEAFRSGADFHKYVASLVYGIPVDDITPDQRTHVKAM 774 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 ++ + YG+S + LA QL+I EA +YF F +HEY+E R+ GY ET+FG Sbjct: 775 SYGLAYGLSTYGLAQQLKISPGEADRLKSQYFATFGKVHEYLESLVAGAREKGYTETMFG 834 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 RR ++ + SP +IR+ ER A+NAPIQGSAADI + AMI +L K+ ++++LQI Sbjct: 835 RRRYFPGLQSPNRNIRDAAERGALNAPIQGSAADIMKIAMIHASDALAKAKVRSRIILQI 894 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 HDELV E+ E + ++ +ME A ++L VPL V+ + ++WQ Sbjct: 895 HDELVVEIAPGEAEQVTGLVRDAMEHA----VDLAVPLDVSTGIGSDWQ 939 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 107/282 (37%), Positives = 153/282 (54%), Gaps = 14/282 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P + G NA+ GF ML ++L + + + H AV F Sbjct: 16 LLVVDGHSLAFRAFFALPAENFSTQAGQATNAVWGFATMLSQVLDSEKPD----HLAVAF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNE+ P YK R PE LL QLPL++ A G+ +E QG+E DDIIAT Sbjct: 72 DMKGGTFRNEMLPQYKGTREAAPEDLLTQLPLIQKMLTALGVTYVEKQGYEGDDIIATLA 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + E+ G+ ++S D+D QL+ T LY D++H V K+ + P + Sbjct: 132 AMGERSGYDTLVLSGDRDAFQLIDERVTVLY--PGHHFKDLKHMTPQAVEDKYHVGPAQY 189 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DNIPG+PG+G AA + +YG LE I+ +A I KK E++ E E Sbjct: 190 PDLAALRGETADNIPGVPGVGDGFAAKWINQYGGLEGIIEHADEIGGKK-GESLRENIEQ 248 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 +L+RK+ LR DV + I +E L + + L +LEF Sbjct: 249 VKLNRKVNALRRDVDLGIGIEDLTFGEVDADALSELFTSLEF 290 >gi|294810416|ref|ZP_06769073.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b] gi|294442381|gb|EFG11191.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b] Length = 340 Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 155/343 (45%), Positives = 215/343 (62%), Gaps = 6/343 (1%) Query: 633 LFTKLKFPSGAK-TKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNH 691 +F KLK AK TKTGQ+ T+ + LE + +P+++ ILE R L K+ TY D+LP Sbjct: 1 MFDKLKIVEKAKKTKTGQYVTSEEVLESLRH-KHPVVEKILEHRGLKKLLGTYIDALPLL 59 Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 IN RT RVHT ++ T TGRL+S PNLQNIPI+ + G++IR+AFI SADYS Sbjct: 60 INPRTGRVHTSFNQTVTATGRLSSSNPNLQNIPIRDENGKEIRKAFIPDEGCLFFSADYS 119 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELRI+AH+++ + F ++ DIH AA+I+ ++++ V MRR AKT NF IIYG Sbjct: 120 QIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYG 179 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 IS F LA ++ + R EA + I YF +PG+ Y++K+ ++ GYVETIF R+ + Sbjct: 180 ISVFGLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPD 239 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 INS + +R ER AINAPIQGSAADI + AM +++ + + KM+LQ+HDEL F Sbjct: 240 INSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELNFS 299 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 VP E +I++ MEKA + VPLK + NW E Sbjct: 300 VPVNEKERVEEIVIEEMEKA----YRMHVPLKADCGWGKNWLE 338 >gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] Length = 910 Score = 277 bits (709), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 164/529 (31%), Positives = 283/529 (53%), Gaps = 15/529 (2%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 L ++ + K H+ K L G+ +RG D L +Y+ + S+D+A + + Sbjct: 391 LAQWLADPEAPKAVHDAKPAWHALTGRGLEVRGVVMDTALAAYLCHPDQRSYDLADLVVR 450 Query: 512 WL--SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569 +L R ++ ++ + + +D S ++ A + +++L L ++ + Sbjct: 451 YLHRELPRTDLDETGQGMLDLDADSGAK---SAGARAVAVVELAGPLAEEVADRGAQALL 507 Query: 570 ERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQL 629 E ++ P++ +++ME GI D + L+ + E + Y+ G + NL SPKQL Sbjct: 508 EDVELPLLRTLAEMEHDGIGADVEYLRGIEREFDAVVERAALGAYEAIGRQVNLGSPKQL 567 Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSL 688 ++LF L P +TKTG + T A L + ++P ++++L R+ +++ T + L Sbjct: 568 QEVLFDDLGMPKTRRTKTG-YTTDADALADLYVKTEHPFLEHLLAHREAIRLRQTV-EGL 625 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747 + R+HT + TGRL+S +PNLQNIPI+T+ G +IR F+ + L++ Sbjct: 626 LRSVAP-DGRIHTTFQQTIAATGRLSSADPNLQNIPIRTEEGYRIREGFVVGEGYETLLT 684 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIE+RI+AH++ L + F + D+H V + +FGV ++V+ MR K +++ Sbjct: 685 ADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHSYVGSRVFGVPTDEVTSAMRSKIKAMSYG 744 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 + YG+S F L+ QL I +EA + YF RF G+ +Y+ RQ GY ET+ GRR Sbjct: 745 LAYGLSAFGLSKQLSIDVAEARTLMDDYFDRFGGVRDYLSGVVAQARQVGYTETLMGRRR 804 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + ++ S R + ER A+NAPIQGSAAD+ + AM+ VH+ + + +++++LLQ+HDE Sbjct: 805 YLPDLTSDNRQRREMAERMALNAPIQGSAADLIKVAMLGVHRQMGEAGMSSRLLLQVHDE 864 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 LV EV E +++ M A L VPL V++ +W+E Sbjct: 865 LVLEVAPGEREALEELVRAQMGAAA----ELSVPLDVSVGTGRSWREAG 909 Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 104/292 (35%), Positives = 154/292 (52%), Gaps = 16/292 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG S YRAF+A P+ + G P NA+ GF +ML LL++ +H AV Sbjct: 25 GRLLLIDGHSMAYRAFFALPVENFSTTSGQPTNAVYGFTSMLINLLRDEDP----THVAV 80 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +D TFR E+Y +YK R PE Q+PL++ A IP++ EADD+IAT Sbjct: 81 AWDVARTTFRTEVYAEYKGTRDATPEPFRGQVPLIQEVLTALRIPSMSKDDVEADDVIAT 140 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLY------DTVKEEKIDIEHVIKKWGIPP 176 AE+ G V + S D+D QLVS T LY D V+ +E +K+G+ P Sbjct: 141 LAGQAEQAGLDVLVCSGDRDTFQLVSDAVTVLYPRKGVSDLVRMSPAAVE---EKYGLAP 197 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 L AL G++ DN+PG+PG+G KTAA + +G L+ ++ A +I K EN+ + Sbjct: 198 ALYPDLAALVGETSDNLPGVPGVGPKTAAKWILAHGGLDGVIAAADQITGKA-GENLRAH 256 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + L+R+L L TDV + I ++ L + + AL+F L +R+ Sbjct: 257 LDQVILNRRLNRLLTDVELPIAVDDLARSEIDREATHEVFDALQFRVLRDRL 308 >gi|255588755|ref|XP_002534708.1| DNA polymerase I, putative [Ricinus communis] gi|223524716|gb|EEF27672.1| DNA polymerase I, putative [Ricinus communis] Length = 267 Score = 277 bits (709), Expect = 6e-72, Method: Composition-based stats. Identities = 136/268 (50%), Positives = 182/268 (67%), Gaps = 4/268 (1%) Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 A +TGRLAS +PNLQNIP++T G++IR AF++PP ++SADYSQIELRI+AH+++ Sbjct: 1 AVAITGRLASSDPNLQNIPVRTAEGRRIREAFVAPPGSHIVSADYSQIELRIMAHLSQDA 60 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 + F N+ DIHR AAEIFGV V + RR+AK INF +IYG+S F LA L I R Sbjct: 61 GMLSAFANNEDIHRATAAEIFGVERAAVDSEQRRYAKVINFGLIYGMSAFGLAQNLNIER 120 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 S AA+YI+RYF R+PG+ +Y+ T+ +Q GYVETIFGRR+ EINS RN ER Sbjct: 121 SAAANYIERYFARYPGVRQYMNDTRELAKQQGYVETIFGRRLWVPEINSANVQRRNGAER 180 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 AAINAP+QG+AAD+ + AMI+V + L KL TK+++Q+HDELV EVP+ E+ + + Sbjct: 181 AAINAPMQGTAADLIKLAMIAVDQWLTAEKLQTKLIMQVHDELVLEVPDAELALIQEHLP 240 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNWQ 973 M+ L VPL + NNW+ Sbjct: 241 RLMQSVA----TLDVPLLAEVGSGNNWE 264 >gi|297626697|ref|YP_003688460.1| DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 892 Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 178/539 (33%), Positives = 281/539 (52%), Gaps = 26/539 (4%) Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSH 503 LT + L + + K H K L L + + G + D L +Y+L + S+ Sbjct: 364 LTPDDEKALAAWLTDPQATKAMHGAKGPLLALWARQLDLAGLDSDTQLAAYLLRPDQRSY 423 Query: 504 DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 D+ +A + L + + + +D S+ Q E A+ + I +L +L +L Sbjct: 424 DLDDLALRHLGRELRVQDSEQVNQETLDFGSERQPAETAMLRARAIAELAGVLDGELDDT 483 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 + L+ P+ V+++ME G+ ID D+L Q+ +E + + E+ + G + NL Sbjct: 484 SQRGLLHSLEMPLERVLARMEQRGVAIDMDVLDQLRSEYDARVQAAEQAAFAAIGTQINL 543 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSK--- 679 SPKQL +LF +L P +TK+G + T A LE++ +P ++++L +R K Sbjct: 544 GSPKQLQAVLFDQLDMPKTKRTKSG-YTTDADALEKLYQKTRHPFLEHLLAYRDTIKLRQ 602 Query: 680 -----IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIR 734 IKST D R+HT Y TGRL+S +PNLQNIPI+T G++IR Sbjct: 603 IIDTLIKSTSDDG----------RIHTTYVQTVAGTGRLSSTDPNLQNIPIRTPEGRRIR 652 Query: 735 RAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKV 793 AF+ + L+SADYSQIE+R++A + L F + D H M A+ +F V +E+V Sbjct: 653 DAFVPGEGFEGLMSADYSQIEMRVMAAASGDKTLIHAFASGADFHSMTASHVFDVPVEQV 712 Query: 794 SPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 +P R K +N+ + YG+S + L+++L + EA + +YF F + +Y++ Sbjct: 713 TPAQRSSVKQMNYGLAYGLSAYGLSSRLNVSVPEARALMDQYFQTFGPVRDYLDSLVEKA 772 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 R+ GY ET+ GRR + ++NS R + ER A+NAP+QG+AADI + AM+ V + L Sbjct: 773 RKQGYTETMLGRRRYLPDLNSSNRQRRQMAERMALNAPMQGTAADIIKTAMLQVEQELSA 832 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 L ++MLLQIHDELV EV E QI+ M+ A I L VPL V+ +W Sbjct: 833 SGLRSRMLLQIHDELVLEVAAGERDRVQQIVGDKMKHA----IELTVPLDVSFGYGRSW 887 Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 107/297 (36%), Positives = 162/297 (54%), Gaps = 10/297 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M + L ++DG S +RAFYA P+ + G NA+ GF +ML LL+N + Sbjct: 1 MTETARLLVIDGHSMAFRAFYALPVENFSTSTGQYTNAVYGFTSMLINLLRNEEP----T 56 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H V FD TFR +IY DYK R K PE Q+ L++ A GI E++GFE DD Sbjct: 57 HLGVAFDVSRRTFRTDIYEDYKGTRAKTPEEFSGQIGLIKQVLDAMGIAHAELEGFEGDD 116 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIP 175 I+AT++ A+ +G+ I+S D+D QLV TT LY V E ++ E V K+G+ Sbjct: 117 IVATWSAQADAKGWENLIVSGDRDSFQLVDDNTTVLYPKKGVSELSRMTPEAVEAKYGVS 176 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P L AL GD+ DN+ G+PG+G KTAA L +YG+L N+L +A IK K +++ Sbjct: 177 PTHYPELAALVGDTSDNLTGVPGVGPKTAAKWLAKYGDLANLLDHADEIKGKV-GDSLRA 235 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 + + + +R+L TD+ + + +E L + N + L+F L +R+ + + Sbjct: 236 HLDDVKRNRELNRELTDLKLPVDVEGLARAEINREAVHEVFDVLQFRTLRDRLFSVF 292 >gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum] Length = 831 Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 169/490 (34%), Positives = 267/490 (54%), Gaps = 34/490 (6%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L +Y++D GR ++ ++ + +++ T + K S + + D +E+ Sbjct: 369 DLELAAYLVDPGRRNYSLSDLREQFFLTT--PLGKGESSLSAVGLLLDR------LESEI 420 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 L++ LLR ++ P+ ++ ME GI + + + I + + Sbjct: 421 GSLEMGDLLR-------------SVEIPVARIIVGMEKAGIPVSLTRILEAKKTIEEKIA 467 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW--KTTAQDLEQINCGDN 665 LE IY +G+ F++ SPKQ+G++L+ +L P +T G T + LE + + Sbjct: 468 GLEAEIYREAGQTFSILSPKQVGEVLYGRLGLPPPRRTGKGSGAPSTDEEALEGL-AALH 526 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQ-RVHTFYSLASTMTGRLASLEPNLQNIP 724 P+ K IL +RQL K STY LP + + R+H ++ TGRL+S PNLQNIP Sbjct: 527 PLPKLILSFRQLRKFLSTYL--LPMEEGRGSDGRLHGQFNQTVAATGRLSSSRPNLQNIP 584 Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 +T+LG +RR F++P L+SADYSQIELR+LAH + L + F DIH AA Sbjct: 585 ARTELGLLVRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREAFSRGEDIHARTAAL 644 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +FG E V+ + RR AKTINF I+YG+S + L+ L + +EA I RYF G+ Sbjct: 645 LFG---EPVTSESRRRAKTINFGILYGMSAYSLSQDLGVEPAEAQGIIDRYFSVVAGVGP 701 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 Y EK + R+ G + T+ GR EI S ++R ER A+N+ +QGSAAD+ ++AM Sbjct: 702 YFEKIREEARRTGRIRTLLGRIRPIPEIRSDNRNVREYGERMAVNSVLQGSAADLVKKAM 761 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 + + +++ L ++LLQ+HDEL+FEV E++ + S ++ +ME A I L VPL V Sbjct: 762 VDLSQAVASSGLKARLLLQVHDELLFEVSEDQAESLSAVVRKTMEGA----IPLSVPLPV 817 Query: 965 NIKVSNNWQE 974 +I +W E Sbjct: 818 SIGRGADWVE 827 Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 98/282 (34%), Positives = 149/282 (52%), Gaps = 9/282 (3%) Query: 10 VDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 +DG +I+RA+Y+ ++R DG+P A F NML LL + AVIF+ Sbjct: 1 MDGFGYIFRAYYSKVSFMTR--DGMPTGAFTVFGNMLLSLLGTFHPR----YLAVIFESR 54 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT--Y 126 R EI P+ KANR PE L Q+PL+ Q IP + G+EADD IA + + Sbjct: 55 TGNVREEILPEIKANRTPPPEELTLQIPLIESLIQGLAIPLLSTDGYEADDTIAALSRAW 114 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 +A+ V ++S DKDL+ LVS +YD + ++ V +KWG+ P ++ L ALT Sbjct: 115 LAQDPDARVLVMSADKDLLSLVSDRLGVYDPMTQKLFGPAEVREKWGVEPGQIPDLLALT 174 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD +DNI G+PG+G KTAA LL ++E+++ ++ +K R ILEY + ++ L Sbjct: 175 GDGVDNIGGVPGVGPKTAAALLAGGLHVEDLVTRIESVRPEKLRPKILEYRDLILRNKSL 234 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +L D+ + E L L + LE + L+ R+ Sbjct: 235 TILHEDIAVDARPEVLALGPPRMDEIRDLAARLESSTLLARI 276 >gi|302533846|ref|ZP_07286188.1| predicted protein [Streptomyces sp. C] gi|302442741|gb|EFL14557.1| predicted protein [Streptomyces sp. C] Length = 483 Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 160/495 (32%), Positives = 272/495 (54%), Gaps = 26/495 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D L +Y++ GR S + ++ ++L + + + D +++ + + + Sbjct: 2 DTALAAYLVKPGRRSFALDVLSVEYLGRELQPPAADGQLAFGADDTAEA---DALMAQAR 58 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 +L L KL + + ++ P ++++++E GI D+D ++ + + + + Sbjct: 59 AVLDLGDAFTAKLPEVGAVELLHEMELPTSELLARLERAGIAADRDHMEGMEQQFAGAVQ 118 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ--------WKTTAQDLEQ 659 + + G +FNL SPKQL ++ F +L P KTKTG W T D E Sbjct: 119 QAVKEAHAAVGHEFNLGSPKQLQEVFFGELDLPKTKKTKTGYTTDADALAWLATQTDHEL 178 Query: 660 INCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 P+I +L R+ +K++ T + L I RVHT +S + TGRL+S +PN Sbjct: 179 ------PVI--MLRHREQAKLRVTV-EGLVKSIAA-DGRVHTSFSQTTAATGRLSSTDPN 228 Query: 720 LQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 LQN+P++TD G+ IRR F+ + L++ADYSQIELR++AH+++ L + F + D+H Sbjct: 229 LQNVPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDLH 288 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 VA+++FGV +V +MRR K +++ + YG+S F LA QL I +EA ++ +F R Sbjct: 289 TTVASQVFGVERSQVDAEMRRKIKAMSYGLAYGLSAFGLAQQLNIEPAEARGLMETFFER 348 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 F G+ +Y+++ + R GY T+FGRR + ++NS R ER A+NAPIQG+AAD Sbjct: 349 FGGVRDYLQRVVDEARATGYTATVFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAAD 408 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL 958 I + AM+ V K++ + L ++MLLQ+HDE+V E+ E +++ M A + L Sbjct: 409 IVKVAMLRVDKAIAEAGLKSRMLLQVHDEIVLEIAPGEAERVEELVRREMGAA----VEL 464 Query: 959 RVPLKVNIKVSNNWQ 973 R PL V++ V +W+ Sbjct: 465 RAPLDVSVGVGGDWE 479 >gi|294786803|ref|ZP_06752057.1| DNA polymerase I [Parascardovia denticolens F0305] gi|315226433|ref|ZP_07868221.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105] gi|294485636|gb|EFG33270.1| DNA polymerase I [Parascardovia denticolens F0305] gi|315120565|gb|EFT83697.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105] Length = 1042 Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 151/426 (35%), Positives = 250/426 (58%), Gaps = 12/426 (2%) Query: 555 LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY 614 L P L +++ + ++ P+ V+S ME+TG +DQ L+Q+ S ++ + Sbjct: 618 LFHPVLASRGQINLLKTIELPVSRVLSAMEMTGAGVDQSRLEQMRESFSAQAEQAQQIAW 677 Query: 615 DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NCGDNPII 668 +G++ NL SPKQL +LF + KTK+G T A L+++ N N + Sbjct: 678 QEAGKEINLQSPKQLQAVLFDDMGLTPTKKTKSGGRTTNAAALQELYMRSIHNERANAFL 737 Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728 +L R+++K+K +L + I+ R R+HT + TGRL+S +PNLQNIP + Sbjct: 738 GALLRHREVNKLKQI-VQTLIDAIDVRDSRIHTTFEQTVAATGRLSSTDPNLQNIPNRNV 796 Query: 729 LGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 G++IR AF+ S + L+S+DYSQ+ELR++AH++ L + F + D H+ VA+ ++G Sbjct: 797 EGREIRGAFVASDGFESLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFHKYVASLVYG 856 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 + I+++S R H K +++ + YG+S + LA QL I +EA +YF F +H+Y+E Sbjct: 857 IPIDQISSDQRSHIKAMSYGLAYGLSTYGLAQQLGISPAEADILRAKYFSTFGKVHDYLE 916 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 ++ GY ET+FGRR ++ ++ S + +R+ ERAA+NAPIQGSAADI + AM Sbjct: 917 SLVAQAKKRGYTETMFGRRRYFPDLRSSRRQLRDAAERAALNAPIQGSAADIMKIAMKKA 976 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 ++ L+D + ++++LQIHDELV E+ E + ++ +ME A + L VPL V+ Sbjct: 977 YQDLKDAGVKSRIILQIHDELVVELAPGEQEQVTAMVKEAMEHA----VKLAVPLDVSTG 1032 Query: 968 VSNNWQ 973 V ++WQ Sbjct: 1033 VGSDWQ 1038 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 103/271 (38%), Positives = 147/271 (54%), Gaps = 20/271 (7%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 + L +VDG S +RA++A P S DG NAI GF ML ++L++ + SH A Sbjct: 16 DRRLLVVDGHSLAFRAYFALPADSFSTSDGQATNAIYGFTTMLAQVLRDEKP----SHVA 71 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 + FD TFRN++ P YK R PE LL QLPL++ +A I +E QGFE DDIIA Sbjct: 72 IAFDVKGGTFRNQMLPQYKGTRDAAPEDLLSQLPLIQEVLKALDISYVERQGFEGDDIIA 131 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWGIPP 176 T + E+ GF ++S D+D QLV + T LY D++H V K+ + P Sbjct: 132 TLATMGEEAGFETFVLSGDRDAFQLVDDSITVLY--PGHHFKDLQHMTPDAVFAKYKVTP 189 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENI 233 + L A+ G+ DNIPG+PG+G AA ++EYG L I+ +A I KK R+NI Sbjct: 190 GQYPDLAAMRGEQADNIPGVPGVGDGYAAKWIKEYGGLAGIVEHADEIGGKKGQALRDNI 249 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264 + L+RK+ L +V + + L+ L Sbjct: 250 ----DQVLLNRKVNALVRNVDLGVSLDEFKL 276 >gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680] gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680] Length = 907 Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 166/513 (32%), Positives = 276/513 (53%), Gaps = 12/513 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K V +G ++ G D L +Y++ GR S + +++ L Y +E+ Sbjct: 400 KVLHNAKGVMRVFAEHGWTVEGVSMDTALAAYLVKPGRRSFALDALS---LEYLGRELEP 456 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + + +D + A+ + IL L +L + ++ P +++ Sbjct: 457 AATADGQLAFGADEGAEADALMVQARAILDLGEAFGERLKEVGSADLLRDMELPTSALLA 516 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ++E GI D+ L+ + + + + + +G +FNL SPKQL ++LF +L P Sbjct: 517 RLERHGIAADKAHLEAMEQMFAGAVQQAVKEAHAAAGHEFNLGSPKQLQEVLFGELGLPK 576 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG DN + +L R+ +K++ T + L I R+HT Sbjct: 577 TKKTKTGYTTDADALAWLAAQTDNELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIHT 634 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQIELR++AH Sbjct: 635 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAH 694 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ L + F + D+H VA+++FGV V +MRR K +++ + YG+S F L+ Q Sbjct: 695 LSEDEGLIEAFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 754 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I EA + YF RF G+ +Y+ + + R GY ET+FGRR + ++NS R Sbjct: 755 LNIDAGEARALMDTYFERFGGVRDYLRRAVDEARATGYTETLFGRRRYLPDLNSDNRQRR 814 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQG+AADI + AM++V ++L++ L ++MLLQ+HDE+V E+ E Sbjct: 815 ETAERMALNAPIQGTAADIVKIAMLNVDRALQEANLKSRMLLQVHDEIVLEIAPGERAKT 874 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +++ M A + LR PL V++ +W+ Sbjct: 875 EELVRREMASA----VQLRAPLDVSVGDGGDWE 903 Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 101/254 (39%), Positives = 144/254 (56%), Gaps = 10/254 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NAI GF +ML N+ ++ +HFAV F Sbjct: 20 LMLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDEAPTHFAVAF 75 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R+E + +YKANR K P+ Q+ L+ A + GFEADDIIAT Sbjct: 76 DVSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAQRFAVDGFEADDIIATLA 135 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EGF V I++ D+D QLVS TT LY T V E + E V +K+G+ P + Sbjct: 136 TQAEAEGFEVLIVTGDRDSFQLVSDHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYPD 195 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ +K K +N+ ++ E+ + Sbjct: 196 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVDEVKGKV-GQNLRDHLESVK 254 Query: 242 LSRKLVMLRTDVPI 255 L+R+L + DV + Sbjct: 255 LNRRLTEMVRDVEL 268 >gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56] gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56] Length = 869 Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 188/532 (35%), Positives = 296/532 (55%), Gaps = 14/532 (2%) Query: 446 TKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHD 504 T +++ LK FF + G+NIK D L GI + D+ L ++++ G Sbjct: 348 TDDVIKPLKDFFGRKDTEFYGYNIKRDSHALKNAGIHVNNIALDLALAEHLINGGAKISY 407 Query: 505 IASIAQKWLSYTRKEILKS-RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 +A L + K + S+PI K + Q S++ LL+ +L + Sbjct: 408 QTLLADLGLVSSAGRYGKEWGQLSLPIQKSPPNPAQYFGEFVSHLPTIKETLLK-ELKSK 466 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 + ++ ++ P+ V+ +E G+ +D + L+ + +S+ L L ++IY L+G FN+ Sbjct: 467 NIEDIFFNMEMPLEKVLFTIERNGMPLDVEDLQNLEKILSEELAILADDIYALAGSPFNI 526 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 SPKQL ++L+ KL K ++ T A+ LE + G++ +I+ IL +R + K+ ST Sbjct: 527 KSPKQLAEVLYNKLGLTPVDKARS----TKAEVLEAMT-GEHDVIEKILAFRSVEKLLST 581 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPT 742 Y +LP ++ T R+H ++ T+TGRLA +PNLQNIPI+++ G+ +R+AF + Sbjct: 582 YVRALPKQVDPCTFRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCDTHQN 641 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 +SADYSQIELR LAH+++ L FE+ D+H A+++F V +EKV+ Q R AK Sbjct: 642 TYFLSADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEKVTKQQRMQAK 701 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 T+NF IIYG + L+ L+I SEA I YF R+P + +I +T + +N V+T+ Sbjct: 702 TVNFGIIYGQQAYGLSKILKISVSEAQKLIDAYFDRYPDVARFINETVSQACENLRVKTL 761 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 GR D +S R + R A+N IQGSAA++ + AM+ + +LE KL ++MLL Sbjct: 762 LGRERIIDNWTEFSNS-RAASGRLAVNTRIQGSAAELIKLAMLQLSDALEKRKLRSRMLL 820 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 QIHDEL+FEVPEEE ++ ME A + L VPL VNI + NW E Sbjct: 821 QIHDELIFEVPEEEKEEMQTLVRDIMESAMI----LSVPLVVNILIGKNWAE 868 Score = 161 bits (407), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 97/263 (36%), Positives = 150/263 (57%), Gaps = 18/263 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 +F++D S F++RA++A P + + G A+ GF + KL+ KE +H +FD Sbjct: 4 IFILDASGFVFRAYFALPDM-KNSSGKGTQAVFGFIRSINKLI----KEFSPNHMVAVFD 58 Query: 67 YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P R EIY DYK+NR K E L Q+P+V+ G+ +E++G EADD+IA+ + Sbjct: 59 GPNNKQSRREIYADYKSNREKKEEDLYQQIPVVKEYCNLLGLSHLEVEGVEADDVIASVS 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCLQA 184 +A EG+ V I + DKDL+QLVSP + + K++ ID V+ +G+PP ++ A Sbjct: 119 KLAIAEGYEVCICTADKDLLQLVSPNVVVINPWKDQPPIDENGVVNIYGVPPCRIPDYLA 178 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL-----INASRIKQKKRRENILEYAET 239 L GD+ DNIPG+ G G K AA LLQ+Y ++E IL + S K +++IL Sbjct: 179 LVGDTSDNIPGVSGCGPKKAAALLQKYHSVEGILEHLDELTGSTHKMFSEQKDIL----- 233 Query: 240 ARLSRKLVMLRTDVPITIPLEHL 262 LS+ L +L +VP+ ++ L Sbjct: 234 -LLSKDLAVLNNNVPLPTEIKDL 255 >gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] Length = 908 Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 150/403 (37%), Positives = 232/403 (57%), Gaps = 9/403 (2%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 ++ P++ V+++ME GI D L + + + + + FNL SPKQL + Sbjct: 508 MELPVMTVLTEMEAIGITADVAHLTGLESTFAAEAAEAVAAAHAAVDQTFNLRSPKQLQE 567 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ILF KL P +TKTG + T A L + +P+++ IL R K+K T + L Sbjct: 568 ILFDKLGMPKTKRTKTG-YTTDADSLAGLYATTQHPVLEAILRHRDREKLKQTVSGLLAE 626 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISAD 749 R+HT Y TGRL+S +PNLQNIP++TD G++IR+ FI + + L++ D Sbjct: 627 VAED--GRIHTTYQQNVAATGRLSSKDPNLQNIPVRTDAGRRIRQGFIVTEGFETLMTCD 684 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIE+RI+AH++ L + F++ D+H VAA +F V V + RR K +++ + Sbjct: 685 YSQIEMRIMAHLSGDEGLIEAFKSGEDLHTTVAARVFNVEPGSVDAEQRRRIKAMSYGLA 744 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YG+S + L+ QL I EA ++ YF RF G+ +Y+ R+ GY ET+FGRR + Sbjct: 745 YGLSAYGLSQQLGITPEEARGLMEEYFTRFGGVRDYLRTVVEEARKAGYTETMFGRRRYL 804 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 ++NS R++ ERAA+NAPIQGSAADI + AM++VH++L K+ +++LLQ+HDELV Sbjct: 805 PDLNSDNRQRRDMAERAALNAPIQGSAADIMKIAMLNVHRALVAAKVKSRVLLQVHDELV 864 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E+ E +++ M A L VPL+V++ +W Sbjct: 865 LEIAPGEAPEVEKLVRAEMASAA----ELMVPLEVSVGTGGDW 903 Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 104/292 (35%), Positives = 152/292 (52%), Gaps = 16/292 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S +RAF+A P + G NA GF +ML +L ++ +H AV F Sbjct: 17 LLLIDGHSMAFRAFFALPAENFSTSTGQHTNAAYGFTSMLINVL----RDEAPTHVAVAF 72 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR E YP+YK R PE Q+PL++ A GI I + +EADDI+AT + Sbjct: 73 DVSRKSFRTEEYPEYKDGRATTPEEFKGQVPLIQQILDALGIQWITLDNYEADDILATLS 132 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVC 181 + A EG+ I S D+D QLV+ TT LY V E ++ E V K+G+ P++ Sbjct: 133 HQAGAEGYETLICSGDRDSFQLVTGDTTVLYPVKGVSELARMTPEAVEAKYGVSPQRYRD 192 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYAE 238 L AL G+ DN+PG+PG+G KTAA + Y L+ ++ A IK K R+++ + Sbjct: 193 LAALVGEKSDNLPGVPGVGPKTAAKWITTYEGLDGVIAAADAIKGKAGQSLRDHLSDVMR 252 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 ARL++ L TD+ + E L + LEF L +R+A+ Sbjct: 253 NARLNK----LVTDLELASRPEGLAWSGWDAEATSEIFSVLEFASLRDRLAS 300 >gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221] gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221] gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3] Length = 879 Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 175/518 (33%), Positives = 288/518 (55%), Gaps = 22/518 (4%) Query: 461 HFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYTR 517 HF+ IGHN+KYD K++ + + +++ + + D M+++++ + S R + D +A + +Y Sbjct: 378 HFV-IGHNLKYDFKIIQNNFDLNLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYET 434 Query: 518 KEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 K + + ++A E++ + L+ +L L LL + + + I Sbjct: 435 LHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLET-PLLELAKNCEFDFI 493 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 ++ ME GI++D + L+ + + + +L E IY L ++FNL+SPKQ+GDILF KL Sbjct: 494 KIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKL 553 Query: 638 KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKRT 696 K PS K KTG + T + L + +P I IL++R+L+K+ STY + L + + Sbjct: 554 KLPSRKKGKTG-YSTDEKVLNAL-LDKHPAITKILDYRELAKLYSTYCEPLLKLALKDKN 611 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 R+++ + T TGRL+S +PNLQNIP + + F++ IS DYSQIELR Sbjct: 612 SRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELR 671 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +LAH ++ L F N DIH A IFG + + + R AK+INF +IYG+ Sbjct: 672 MLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKT 727 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ L+I A YI++YF F I +Y E KN +QNG++ T+ GR+ ++D N+ Sbjct: 728 LSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKP 787 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 I + ER +IN+ +QGSAAD+ + AM+ ++K L + K K++LQIHDEL+FEV ++ Sbjct: 788 MQIA-MYERESINSILQGSAADVIKLAMLEINKELNEDK---KLILQIHDELIFEVKDDL 843 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME + L+V LK + ++ NW + Sbjct: 844 CENFVKKTRDIMENI----VKLKVKLKTSSSIAKNWGD 877 Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 103/331 (31%), Positives = 164/331 (49%), Gaps = 26/331 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R +YA + G I+GF N ++ L + E + + D Sbjct: 4 LTIIDTFGFFFRLYYALKDF-KNSQGQASGMISGFANFIYSL----KNEHKSDYIVFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+EI P+YK NR P LL Q+P+ + G ++ +G+EADDIIA++ Sbjct: 59 SKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIEMIEKMGFISVSQEGYEADDIIASFVK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 E V II+ DKDL QL+ T +Y + + D ++K+G+ P ++ AL Sbjct: 119 TCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAACLEKYGVKPNQIRDFLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ GIG K A LL E+G++E I N + ++ ++ R +LE E A LS+K Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLESKENAFLSKK 238 Query: 246 LVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 L L ++ + T P E +L +++ L+ E L+ ++ D N Sbjct: 239 LASLYDNLEVQNLIEKATYPDEEPLL------KILEILEHYELNTLLKKLRQNPDNKDKN 292 Query: 299 I---EPVVLDINTTENKGIAIETEIDRDTTI 326 + +V D ENK I +D+++ I Sbjct: 293 LGFKATLVQD----ENKLFEILNTLDKESII 319 >gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712] Length = 916 Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 168/515 (32%), Positives = 278/515 (53%), Gaps = 18/515 (3%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K V +G S+ G D L +Y++ GR S + +++ + Y +E+ Sbjct: 409 KVLHNAKGAMRVFPEHGWSIAGVTMDTALAAYLVKPGRRSFALDALS---VEYLHRELAP 465 Query: 523 SRKSSIPIDKISDSQVQEHAI-ENSNVILQLWLLLRPKL---IVEKLLHVYERLDKPMID 578 + + + +D + A+ + +L L KL +LLH +++ P Sbjct: 466 AAAADGQLAFGADDTAEAEALMTQARAVLDLGDAFAEKLDEVGARELLH---QVELPTSA 522 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 +++++E GI D+D L+ + + + + + + G +FNL SPKQL ++ F +L Sbjct: 523 LLARLERHGIAADRDHLEAMEQQFAGAVQQAVKEAHASVGHEFNLGSPKQLQEVFFGELN 582 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 P KTKTG ++ + +L R+ ++++ST + L I R Sbjct: 583 LPKTKKTKTGYTTDADALAWLAAQTEHELPVIMLRHREQARLRSTV-EGLIKTIGA-DGR 640 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRI 757 +HT +S TGRL+S +PNLQN+P++TD G+ IR F+ + L++ADYSQIELR+ Sbjct: 641 IHTTFSQTVAATGRLSSTDPNLQNVPVRTDEGRAIRHGFVVGEGFEALMTADYSQIELRV 700 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 +AH+++ L + F + D+H VA+++FGV V +MRR K +++ + YG+S F L Sbjct: 701 MAHLSEDAGLIEAFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGL 760 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 + QL I EA + YF RF G+ +Y+ + + R GY ET+ GRR + ++NS Sbjct: 761 SQQLNIDPGEARGLMDTYFERFGGVRDYLRRVVDEARATGYTETMLGRRRYLPDLNSDNR 820 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 R ER A+NAPIQG+AADI + AM++V ++L + LA++MLLQ+HDE+V E+ E Sbjct: 821 QRREAAERMALNAPIQGTAADIVKVAMLNVDRALTEAGLASRMLLQVHDEIVLELAPGER 880 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ M A +LR PL V++ V NW Sbjct: 881 DRVETLVRAQMSAAA----DLRAPLDVSVGVGQNW 911 Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 102/254 (40%), Positives = 148/254 (58%), Gaps = 10/254 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NAI GF +ML N+ ++ +HFAV F Sbjct: 29 LLLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDEAPTHFAVAF 84 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R+E +P+YKANR K P+ Q+ L+ A +P + GFEADD+IAT T Sbjct: 85 DVSRKTWRSEEFPEYKANRSKTPDEFKGQVELIGELLDAMNVPRFAVDGFEADDVIATLT 144 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKI---DIEHVIKKWGIPPEKMVC 181 AE EGF V I + D+D QLVS TT +Y T ++ E V +K+G+ P + Sbjct: 145 VQAEAEGFDVRIFTGDRDSFQLVSDRTTVIYPTKGVSEVTHYTPEKVQEKYGLTPSQYPD 204 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ + ++ A +K K +N ++ E+ + Sbjct: 205 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFDELVARAEEVKGKA-GQNFRDHLESVK 263 Query: 242 LSRKLVMLRTDVPI 255 L+R+L + TDV + Sbjct: 264 LNRRLTAMVTDVEL 277 >gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] Length = 879 Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 177/519 (34%), Positives = 287/519 (55%), Gaps = 22/519 (4%) Query: 460 EHFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYT 516 +HF+ IGHN+KYD K++ + + +S+ + + D M+++++ + S R + D +A + +Y Sbjct: 377 KHFI-IGHNLKYDFKIIENNFKLSLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYE 433 Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 K + + ++A E++ + L+ +L L LL + + + Sbjct: 434 TLHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNL-EPHLLDLAKNYEFDF 492 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 I ++ ME GI++D L+ + + + L E IY L ++FNL+SPKQ+GDILF K Sbjct: 493 IKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALCEDRFNLNSPKQVGDILFEK 552 Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKR 695 LK PSG K KTG + T + L ++ +P+I IL++R+L+K+ STY + L + Sbjct: 553 LKLPSGKKGKTG-YSTDEKVLNEL-LDKHPVISKILDYRELAKLYSTYCEPLLKLALKDE 610 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 R+++ + T TGRL+S +PNLQNIP + + FI+ IS DYSQIEL Sbjct: 611 NSRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFIAKEGFSFISLDYSQIEL 670 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 R+LAH ++ L F+N DIH A IFG + + + R AK+INF +IYG+ Sbjct: 671 RMLAHFSEDEKLLNAFKNDEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMGYK 726 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 L+ L+I + A YI++YF F I Y EK KN + NG++ T+ GR+ ++D N+ Sbjct: 727 TLSKNLKIEANLAKTYIEKYFENFTSIKSYFEKVKNEAKANGFISTLSGRKRYFDFENAK 786 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + + ER +IN+ +QGSAADI + AM+ + K L K +++LQIHDEL+FEV +E Sbjct: 787 PMQVA-MYERESINSILQGSAADIIKFAMLEIAKILNQDK---RLILQIHDELIFEVKDE 842 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME + L+V LK + ++ W + Sbjct: 843 LCENFVKKTSDIMENI----VKLKVKLKTSSSIAKKWGD 877 Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 93/275 (33%), Positives = 144/275 (52%), Gaps = 11/275 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L ++D F +R +YA + G I+GF N ++ L + E + + D Sbjct: 4 LTIIDTFGFFFRLYYALKGF-KNSQGQASGMISGFANFIYSL----KNEYKSDYIIFALD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR++I P+YK NR P LL Q+P+ + G + +G+EADDIIA+ Sbjct: 59 SKGKTFRSDIDPNYKKNRTPPPPELLEQIPICIEMIEKMGFMSASYEGYEADDIIASVVK 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 + + V II+ DKDL QL+ T +Y + + D E +K+G+ P ++ AL Sbjct: 119 TCKDKDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEEACFEKYGVKPYQIKDFLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRK 245 GDS DNIPG+ GIG K A LL E+G++E I N + ++ ++ R+ +LE E A LS+K Sbjct: 179 CGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRKLLLEGKENAFLSKK 238 Query: 246 LVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280 L L D+ ++ +LE + P+ LK LE Sbjct: 239 LASLYEDLEVSN-----LLEKADFPQDEPLLKILE 268 >gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228] gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228] Length = 847 Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 177/519 (34%), Positives = 287/519 (55%), Gaps = 22/519 (4%) Query: 460 EHFLKIGHNIKYD-KLVLHRYGISM-RGFEDIMLMSYVLD-SGRSSHDIASIAQKWLSYT 516 +HF+ IGHN+KYD K++ + + +S+ + + D M+++++ + S R + D +A + +Y Sbjct: 345 KHFI-IGHNLKYDFKIIENNFKLSLPQKYADTMILAWLKNPSLRVNMD--DLALRLFNYE 401 Query: 517 RKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPM 576 K + + ++A E++ + L+ +L L LL + + + Sbjct: 402 TLHFESLVKKGENFASVELEKACKYAAEDAYITLRFYLYFLKNL-EPHLLDLAKNYEFDF 460 Query: 577 IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTK 636 I ++ ME GI++D L+ + + + L E IY L ++FNL+SPKQ+GDILF K Sbjct: 461 IKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALCEDRFNLNSPKQVGDILFEK 520 Query: 637 LKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HINKR 695 LK PSG K KTG + T + L ++ +P+I IL++R+L+K+ STY + L + Sbjct: 521 LKLPSGKKGKTG-YSTDEKVLNEL-LDKHPVISKILDYRELAKLYSTYCEPLLKLALKDE 578 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 R+++ + T TGRL+S +PNLQNIP + + FI+ IS DYSQIEL Sbjct: 579 NSRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFIAKEGFSFISLDYSQIEL 638 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 R+LAH ++ L F+N DIH A IFG + + + R AK+INF +IYG+ Sbjct: 639 RMLAHFSEDEKLLNAFKNDEDIHARTAIMIFG----ESNYETRSIAKSINFGLIYGMGYK 694 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 L+ L+I + A YI++YF F I Y EK KN + NG++ T+ GR+ ++D N+ Sbjct: 695 TLSKNLKIEANLAKTYIEKYFENFTSIKSYFEKVKNEAKANGFISTLSGRKRYFDFENAK 754 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 + + ER +IN+ +QGSAADI + AM+ + K L K +++LQIHDEL+FEV +E Sbjct: 755 PMQVA-MYERESINSILQGSAADIIKFAMLEIAKILNQDK---RLILQIHDELIFEVKDE 810 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ME + L+V LK + ++ W + Sbjct: 811 LCENFVKKTSDIMENI----VKLKVKLKTSSSIAKKWGD 845 Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 10/244 (4%) Query: 38 IAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPL 97 I+GF N ++ L + E + + D TFR++I P+YK NR P LL Q+P+ Sbjct: 2 ISGFANFIYSL----KNEYKSDYIIFALDSKGKTFRSDIDPNYKKNRTPPPPELLEQIPI 57 Query: 98 VRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLV-SPTTCLYD 156 + G + +G+EADDIIA+ + + V II+ DKDL QL+ T +Y Sbjct: 58 CIEMIEKMGFMSASYEGYEADDIIASVVKTCKDKDIFVRIITQDKDLYQLIKDGKTSIYS 117 Query: 157 TVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN 216 + + D E +K+G+ P ++ AL GDS DNIPG+ GIG K A LL E+G++E Sbjct: 118 PISKNDYDEEACFEKYGVKPYQIKDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEG 177 Query: 217 ILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFL 276 I N + ++ ++ R+ +LE E A LS+KL L D+ ++ +LE + P+ L Sbjct: 178 IYENLTLVRNERSRKLLLEGKENAFLSKKLASLYEDLEVSN-----LLEKADFPQDEPLL 232 Query: 277 KALE 280 K LE Sbjct: 233 KILE 236 >gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] Length = 901 Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 168/514 (32%), Positives = 273/514 (53%), Gaps = 10/514 (1%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-L 521 K+ H K L G S+ G D L +Y+ + S+D+ +A++ L + Sbjct: 392 KVVHGGKSVWHELASRGYSLEGVVFDTELAAYLCFPDQRSYDLGDLAERHLHRELTPVDT 451 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 S + ++ + DS+ A+ + + L +LR +L + L+ P+ V+ Sbjct: 452 SSDQGALDLSVGEDSEGGRLAV-RAAALTDLAEVLRGELGDRSAEPLLTELELPLSAVLV 510 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME GI +D D L+++ + + + Y++ G + NL SPKQL ++LF +L P Sbjct: 511 HMERHGIAMDVDYLRELEQHFGELVTGAAASAYEVIGREVNLGSPKQLQEVLFDQLDMPK 570 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 K KTG A + ++P +K +L+ R ++++ T L + + R+HT Sbjct: 571 TKKIKTGYTTDAAALADLFVKTEHPFLKFLLDHRDSTRLRQTVEGLLKSVADD--GRIHT 628 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 + TGRL+S EPNLQNIPI+T+ G++IRRAF+ + L++ADYSQIE+RI+AH Sbjct: 629 TFQQTIAATGRLSSTEPNLQNIPIRTEAGRRIRRAFVVGDGYETLLTADYSQIEMRIMAH 688 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ L + F D+H V + +F V V+P MR K +++ + YG+S F L+ Q Sbjct: 689 LSGDEGLIEAFRTGEDLHNYVGSRVFQVETSAVTPAMRSKIKAMSYGLAYGLSSFGLSNQ 748 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I EA+ ++ YF RF G+ Y+ + R NGY TI GRR + ++ S R Sbjct: 749 LNIDVKEASKLMEDYFTRFGGVRTYLAGVVDEARANGYTATIMGRRRYLPDLTSDNRQRR 808 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 + ER A+NAPIQGSAADI + AM+ V K + L +++LLQ+HDEL+ EV E+ Sbjct: 809 EMAERMALNAPIQGSAADIIKVAMLGVEKEIAVRGLRSRLLLQVHDELILEVGHGELEEL 868 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++ M A +L VPL V++ ++W + Sbjct: 869 TTLVREQMGSAA----DLLVPLDVSVGTGSSWHD 898 Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 104/304 (34%), Positives = 159/304 (52%), Gaps = 12/304 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P+ G NA+ GF +ML LL+ +H AV F Sbjct: 16 LLLIDGHSMAYRAFFALPVDKFSTTSGQHTNAVHGFISMLATLLRVEEP----THVAVAF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D + TFR E P YK R PE Q+PL++ +A + ++ FEADDI+AT + Sbjct: 72 DAGSTTFRTEALPSYKGTRDATPEPFKGQVPLIKEVLEAMHVRHLDKDNFEADDILATLS 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVC 181 A+ G V + S D+D +Q V+ + VK ++ + V K+G+ P + Sbjct: 132 SQADALGMEVLVCSGDRDSLQFVNENVTVLYPVKGVSELARMTPDAVRTKYGVEPHQYPE 191 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G++ DN+PG+PG+G KTAA + ++G+LE IL A IK K E++ ++ + R Sbjct: 192 LAALVGETSDNLPGVPGVGPKTAAKWINQFGSLEQILDRAGEIKGKA-GESLRDHLDVVR 250 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDC--DAANI 299 L+R+L L TDV + + L ++ + + + AL+F L R+ + D N Sbjct: 251 LNRQLNHLLTDVELPFGPDDLRVQPWDREAMSTVFDALQFRTLRERLFAMHPSADDDENA 310 Query: 300 EPVV 303 P V Sbjct: 311 APAV 314 >gi|332701547|ref|ZP_08421635.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay] gi|332551696|gb|EGJ48740.1| DNA polymerase I [Desulfovibrio africanus str. Walvis Bay] Length = 882 Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 165/487 (33%), Positives = 262/487 (53%), Gaps = 25/487 (5%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSN 547 D+ L +Y+L+ S+D W + + S+ +D +++ H N Sbjct: 419 DLGLAAYLLNPEERSYD-------W---------QRLRDSLALDPDAEAV---HPQANGL 459 Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 L +L +L L + L+ P++ V+ ME GI ID+ + +E++ + Sbjct: 460 AAKALHDVLAKRLAAANLTELLRDLEMPLVPVLVAMEQAGIAIDKAAFESFLSEVNAQIG 519 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPI 667 L I+ ++ FN+ S +QL +LF +L + KT G T LE++ ++P+ Sbjct: 520 ELTSRIHAVAEMPFNIRSNQQLAQLLFDRLGLKAKGKTPGGAQSTANPVLEKLR-NEHPV 578 Query: 668 IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 + +ILE+R L K++STY + LP +++ R+HT ++ +T TGRL+S PNLQNIPI+ Sbjct: 579 VADILEFRMLEKLRSTYLEPLPKLADEQG-RIHTTFNQLATATGRLSSSAPNLQNIPIRG 637 Query: 728 DLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 G ++R F + P L +ADYSQIELR+LAH+++ L + F + DIH A IF Sbjct: 638 PQGTRMRACFTAGPGCLLAAADYSQIELRVLAHMSQDPTLLEAFRHGQDIHARTAGLIFD 697 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 + +V+P RR AKTINF ++YG+ P +LA +L I ++A ++I+RYF + E+ + Sbjct: 698 KDAGQVAPDERRSAKTINFGLLYGMGPQKLAAELGIALAQAKEFIERYFVGLSKLKEFYD 757 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 QNG V T+ GRR +I+S +++ R AIN IQGSAADI + AMI Sbjct: 758 SIVKEAEQNGSVVTMLGRRRLLPDIHSRNDNLKAQAVRQAINTRIQGSAADIIKLAMIRA 817 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 H + L +++LQ+HDEL+ E PE A M++ + L VPL V++ Sbjct: 818 HADEKIRALGGRLILQVHDELLLETPEATAQEAGA----RMKEIMAGIVELSVPLVVDMG 873 Query: 968 VSNNWQE 974 V NW E Sbjct: 874 VGRNWAE 880 Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 107/283 (37%), Positives = 150/283 (53%), Gaps = 15/283 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++L+DGS+F YR FYA +SR DG P NA+ +L KLL+ R + H A + D Sbjct: 14 VYLIDGSAFFYRGFYAFRDMSRS-DGFPTNALFVVLRLLIKLLREERPK----HLAFVLD 68 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P FR++++ YKA R PE LL Q +R + GIP I +G EADD IA+ Sbjct: 69 GPGKNFRHDLFKPYKAQRSATPEDLLKQNAPLRRGVELLGIPLIVSEGGEADDCIASLVT 128 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYD-TVKEEKI-DIEHVIKKWGIPPEKMVCLQA 184 + E V I+ DKDL Q + ++D +K EK+ +E ++ G+ P QA Sbjct: 129 RLKAE-RPVVIMGADKDLNQCLDERVFIWDPALKSEKLATLESFRQEQGMEPGHWPDYQA 187 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI---LINASRIKQKKRRENILEYAETAR 241 L GDS DNIPG+PGIG KTA ++ E+ LE I L + Q K RE+I + A Sbjct: 188 LIGDSSDNIPGVPGIGPKTATKIMAEHRTLEEIEAHLDELPKTLQAKLREHI----QDAY 243 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 R+L LRTD T+ L+ L + + ++ FL EF L Sbjct: 244 TYRQLTRLRTDFCATLGLDSLAWREPDWKQVQDFLAEYEFRSL 286 >gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054] Length = 895 Score = 274 bits (701), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 163/502 (32%), Positives = 272/502 (54%), Gaps = 17/502 (3%) Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKS---SIPIDKISD 535 G S G D L +Y+ GR + + +A+++L + ++ S D+ Sbjct: 399 GWSFAGVTADTALAAYLEKPGRRAFTLDVLAEEYLGRSLAPATAQAETGQLSFDADEPDP 458 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + + + + + L L +L + ++ ++ P+ +++++ME GI D++ L Sbjct: 459 TAGAQALMTRARAVHDLAGLFDTRLAEVGAVELFHDMELPIAELLARMERHGIAADREWL 518 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 + + A+ + + E + +G +FNL SPKQL +ILF L P K KTG + T A Sbjct: 519 RGLEAQFAAEIQRCVEEAHAAAGREFNLGSPKQLQEILFGDLGLPKTKKIKTG-YTTDAD 577 Query: 656 DLEQI---NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 L + + P+I +L R +K+++T + L ++ + R+HT ++ TGR Sbjct: 578 ALTWLATQTTNELPVI--LLRHRDQAKLRTT-VEGLLKTVSPQG-RIHTTFNQMVAATGR 633 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 L+S +PNLQNIP++T+ G+ IRRAF+ + L++ADYSQIELRI+AH+++ L + F Sbjct: 634 LSSQDPNLQNIPVRTEEGRAIRRAFVVGEGYETLLTADYSQIELRIMAHLSEDEALIEAF 693 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + D+H VA+++F V V +MRR K +++ + YG+S + L+ QL I +EA Sbjct: 694 TSGEDLHTTVASQVFAVAPADVDAEMRRKIKAMSYGLAYGLSAYGLSQQLGIKPAEAQGL 753 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 + YF RF G+ +Y+ R GY ET+ GRR + ++ S R + ER A+NAP Sbjct: 754 MDTYFERFGGVRDYLHNVVEEARAVGYTETLLGRRRYLPDLTSDNRQRREMAERMALNAP 813 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGSAADI + AM+ V ++L L ++MLLQ+HDE+V EV E ++ M A Sbjct: 814 IQGSAADIVKIAMLRVDEALRTAGLTSRMLLQVHDEIVLEVAPGERERVEALVREQMAGA 873 Query: 952 CLPKINLRVPLKVNIKVSNNWQ 973 LR PL V++ +W+ Sbjct: 874 ----YPLRAPLDVSVGAGADWE 891 Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 155/279 (55%), Gaps = 10/279 (3%) Query: 8 FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+DG S YRAF+A P+ + G NA+ GF +ML +++ R +H AV FD Sbjct: 1 MLLDGHSMAYRAFFALPVENFSTATGQHTNAVYGFASMLANTVRDERP----THLAVAFD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ YP+YKANR P+ Q+PL+ A +P I + FEADD+IAT Sbjct: 57 LSRQTFRSAEYPEYKANRSATPDEFRSQIPLIGELLDAMRVPRITAENFEADDVIATLAT 116 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-PTTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVCL 182 A EGF V +++ D+D +QLV+ T LY T V E + E V +K+G+ P++ L Sbjct: 117 AAAAEGFEVLVVTGDRDSLQLVTDDVTVLYPTKGVSELTRYTPEKVAEKYGVRPDQYPDL 176 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD DN+PGIPG+G KTAA + +YG+ ++ +A +K K E + E+ ++ + Sbjct: 177 AALRGDPSDNLPGIPGVGEKTAAKWVNQYGSFAALVEHADEVKGKI-GEKLREHLDSVKR 235 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 +R L L DV + + + L + + ++ALEF Sbjct: 236 NRFLTELVRDVELPLGVAQLERAPFDKDEVARLMEALEF 274 >gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] Length = 894 Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 168/514 (32%), Positives = 282/514 (54%), Gaps = 14/514 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYTR-KEIL 521 K+ H K L G+ + G +D + Y++ R ++++A +AQ L+ Sbjct: 385 KVLHGFKAALKALTARGLELEGVVDDTSISGYLIQPDRRTYELAELAQHHLNVGMPAATA 444 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 K+ + + D +D+ E ++ + V+ L +L + + L+ P+ V++ Sbjct: 445 KAGQLELSFDG-NDTAAAEALVQAAAVVSALSRFFETELKERRAEELLSTLELPVSRVLA 503 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ME+ GI ID D + + A++++ + +E + G + NL SPKQL +LF +L+ P Sbjct: 504 DMELAGIGIDLDRMDEQLADLARVIDQAQEQAFAAIGHEVNLGSPKQLQTVLFEELQLPK 563 Query: 642 GAKTKTGQWKTTAQDLEQI--NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRV 699 K K+G + T A L+ + G +++ ++ R+ +K++ +SL + + R+ Sbjct: 564 TKKIKSG-YTTDAASLKNLLEKTGHEFLVQ-LMAHREAAKLRQMI-ESLKKSVAE-DGRI 619 Query: 700 HTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRIL 758 HT Y+ TGR++S PNLQNIPI+++ G+++R F+ S + L+SADYSQIE+RI+ Sbjct: 620 HTTYAQNVAATGRISSNNPNLQNIPIRSEEGRRVRGIFVVSDGYECLLSADYSQIEMRIM 679 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 AH++ L Q +++ D+HR V + IF V ++V+ MR K +++ + YG++ F L+ Sbjct: 680 AHLSGDAGLIQAYKDGEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYGLTSFGLS 739 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL I EA +K YF RF + +Y+ + R +GY TI GRR + ++ S Sbjct: 740 KQLEISVDEARTLMKDYFDRFGAVRDYLRGVVDQARVDGYTSTIEGRRRYLPDLTSTDRQ 799 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 +R ER A+N+PIQGSAADI +RAM+ VH L+ L ++MLLQ+HDELV EV E Sbjct: 800 LRENAERIALNSPIQGSAADIIKRAMLGVHAELQAQGLKSRMLLQVHDELVLEVAPGERA 859 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ M A +L VPL+V I V +W Sbjct: 860 AVEALVTEQMAAAA----DLSVPLEVQIGVGPSW 889 Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 103/309 (33%), Positives = 156/309 (50%), Gaps = 23/309 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M + L ++DG S +RAF+A P +G NAI GF +ML L+ KE + Sbjct: 1 MTGQPRLLVLDGHSMAFRAFFALPADKFSTSNGQHTNAIHGFTSMLINLI----KEQQPT 56 Query: 60 HFAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 H AV FD T R Y +YK R + P + Q+ L+ +A+GI I++ G+EAD Sbjct: 57 HIAVAFDVSDESTHRKAEYSEYKGGRNETPREMSGQIDLIGQVMEAWGIKTIKMPGYEAD 116 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKK 171 DI+AT + EK G V ++S D+D QL++ P + D + + IE K Sbjct: 117 DILATLAAMGEKAGHEVLLVSGDRDAFQLITDNVFVLYPKKGVSDIPRMDAAAIE---AK 173 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK---K 228 + +PP + L AL G++ DN+PG+PG+G KTAA + YG LE +L + I K Sbjct: 174 YFVPPSRYSDLAALVGETADNLPGVPGVGPKTAAKWINLYGGLEGVLEHLDSIGGKVGDS 233 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 REN+ + + +R+L L TD+ + + L+ L + L LEF + +R+ Sbjct: 234 LRENV----DNVKRNRRLNQLHTDLELPVTLDDLYEPRPDQAALEDLFDELEFKTIRSRL 289 Query: 289 ATTYDCDAA 297 Y D A Sbjct: 290 FALYGNDDA 298 >gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE] gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE] Length = 903 Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 165/513 (32%), Positives = 276/513 (53%), Gaps = 12/513 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K V G + G D L +Y++ GR S + ++A ++L +E+ Sbjct: 396 KVMHNAKNALRVFPEQGWRLEGVSMDTALAAYLVKPGRRSFALDALAVEYLG---RELAP 452 Query: 523 SRKSSIPIDKISDSQVQEHAI-ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + + +D + + A+ + +L L +L + ++ P +++ Sbjct: 453 APSADGQLAFGADDRAEADALMAQARAVLDLGEAFAVRLEEVGATGLLHDMELPTSILLA 512 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ++E GI D+ L+ + + + + + + G +FNL SPKQL ++LF +L P Sbjct: 513 RLERHGIAADRSHLEGMEQQFAGAVQQAVKEAHAAVGREFNLGSPKQLQEVLFGELALPK 572 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG ++ + +L R+ +K++ T + L I + R+HT Sbjct: 573 TKKTKTGFTTDADALAWLAAQTEHELPVIMLRHREQAKLRVTV-EGLIKTIGQ-DGRIHT 630 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQIELR++AH Sbjct: 631 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAH 690 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ L + F + D+H VA+++FGV+ V +MRR K +++ + YG+S F L+ Q Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVDKSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 750 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I EA + YF RF G+ +Y+ + R GY ETI GRR + ++NS R Sbjct: 751 LNIDAGEARGLMDTYFQRFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRR 810 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQG+AADI + AM+ V ++L + +L ++MLLQ+HDE+V E+ E Sbjct: 811 EAAERMALNAPIQGTAADIVKVAMLHVDRALTEARLTSRMLLQVHDEIVLEIAAGEREQV 870 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +I+ M A + LR PL V++ V +W+ Sbjct: 871 EEILRREMSTA----VELRAPLDVSVGVGRDWE 899 Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 94/254 (37%), Positives = 139/254 (54%), Gaps = 10/254 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NA+ GF +ML N+ ++ +HFAV F Sbjct: 16 LLLMDGHSLAYRAFFALPAENFTTATGQPTNAVYGFMSML----ANTLRDEAPTHFAVAF 71 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R +P+YKANR K P+ Q+ L+ A + GFEADD+IAT Sbjct: 72 DVSRKTWRATEFPEYKANRSKTPDEFKGQVELIGELLDAMHADRFAVDGFEADDVIATLA 131 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE GF V I++ D+D QL++ T LY T V E + E V +K+G+ P + Sbjct: 132 TQAEAAGFEVLIVTGDRDSFQLITDDVTVLYPTKGVSELTRFTPEKVQEKYGLTPGQYPD 191 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ A +K K +N ++ + + Sbjct: 192 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERADEVKGKA-GQNFRDHLDAVK 250 Query: 242 LSRKLVMLRTDVPI 255 ++R L + DV + Sbjct: 251 MNRVLTEMVRDVEL 264 >gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] Length = 906 Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 166/513 (32%), Positives = 273/513 (53%), Gaps = 12/513 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K V +G ++ G D L +Y++ GR S D+ ++ L Y +E+ Sbjct: 399 KVLHNAKGAMRVFAEHGWTIEGVTMDTALAAYLVKPGRRSFDLDALT---LEYLGRELAP 455 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + +D + + A+ + IL L +L + ++ P +++ Sbjct: 456 PAAADGQLAFGADEEAEADALMVQARAILDLGEAFTGRLKEVGAADLLGDMELPTSALLA 515 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +ME GI D+ L+ + + + + +G +FNL SPKQL ++LF +L P Sbjct: 516 RMERHGIAADRAHLESMEQMFAGAVQQAVREAHAAAGHEFNLGSPKQLQEVLFGELGLPK 575 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG +N + +L R+ +K++ T + L I R+HT Sbjct: 576 TKKTKTGYTTDADALAWLAAQTENELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIHT 633 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQIELR++AH Sbjct: 634 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAH 693 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ L + F + D+H A+++FGV V +MRR K +++ + YG+S F L+ Q Sbjct: 694 LSEDAGLIEAFTSGEDLHTTAASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 753 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I +EA ++ YF RF G+ +Y+ + R GY T+FGRR + ++NS R Sbjct: 754 LGIEAAEARTLMEAYFERFGGVRDYLRRVVEEARATGYTATLFGRRRYLPDLNSDNRQRR 813 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQG+AADI + AM+ V ++L LA++MLLQ+HDE+V E+ E Sbjct: 814 EAAERMALNAPIQGTAADIVKIAMLRVGEALRAAGLASRMLLQVHDEIVLEIAPGERERV 873 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 ++ M A ++L+ PL V++ V +W+ Sbjct: 874 EALLRREMTTA----VHLKAPLDVSVGVGRDWE 902 Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 100/254 (39%), Positives = 143/254 (56%), Gaps = 10/254 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NAI GF +ML N+ ++ +HFAV F Sbjct: 19 LMLMDGHSLAYRAFFALPAENFTTATGQPTNAIYGFASML----ANTLRDEAPTHFAVAF 74 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R+E + +YKANR K P+ Q+ L+ A ++GFEADDIIAT Sbjct: 75 DVSRKTWRSEEFTEYKANRSKTPDEFKGQVQLIGELLDAMHADRFAVEGFEADDIIATLA 134 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE GF V I++ D+D QLVS T LY T V E + E V++K+G+ P + Sbjct: 135 TQAEAAGFDVLIVTGDRDSFQLVSEHVTVLYPTKGVSELTRFTPEKVLEKYGLTPSQYPD 194 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ +K K +N+ E+ E+ + Sbjct: 195 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVEEVKGKA-GQNLREHLESVK 253 Query: 242 LSRKLVMLRTDVPI 255 L+R+L L V + Sbjct: 254 LNRRLTELERQVEL 267 >gi|282856785|ref|ZP_06266046.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455] gi|282585408|gb|EFB90715.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455] Length = 866 Score = 274 bits (700), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 161/417 (38%), Positives = 243/417 (58%), Gaps = 13/417 (3%) Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 K+ + + V +D P+I + ME GI++D++ + +S E+ + L ++ E +Y+ +G Sbjct: 455 KIAAQNMTRVMNEIDLPLIPSLIGMERRGIRLDREKMLALSRELERQLNAITEKVYEAAG 514 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN--CGDN-PIIKNILEWR 675 + NL+SPKQ+G++LF KL P KTKTG + T LEQ+ CG I +LE+R Sbjct: 515 CEINLNSPKQIGELLFEKLGLPVVKKTKTG-YSTDVSVLEQLREICGARCEIPGQLLEYR 573 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 +L K+ S + L + TF SL +T TGRL+S +PN+QN+P + GQ+IR Sbjct: 574 ELQKMASGFVQPLLSAAGGDGLIHSTFESL-TTGTGRLSSRDPNMQNLPTYSGWGQRIRE 632 Query: 736 AFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794 I S P +ADYSQIELR+LAH++ L ++F + DIH AA IFG+ + V+ Sbjct: 633 CLIPSQPGHCFAAADYSQIELRVLAHLSGDPQLIEIFNSDRDIHTETAAMIFGLPADAVT 692 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 ++RR AKT++F +IYG+S F LA++L R+ A + YF PG+ EY+E +K Sbjct: 693 KELRRSAKTVSFGLIYGMSVFGLASRLGTDRNTAFQIMDAYFAALPGVREYMETSKKKSL 752 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 + GY T+FGRR DEI + + ++ +R AINAPIQG+AADIT+ AM V Sbjct: 753 EFGYTSTLFGRRRPMDEIAT-GNQTKDHQKRVAINAPIQGTAADITKIAMNKVAAHFAGR 811 Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 +A M+LQ+HD +V E P ++ + + ME A ++L VPLK V + Sbjct: 812 DVA--MVLQVHDSIVCECPHDQAEQTALELSQVMESA----VHLSVPLKTERTVGTS 862 Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 96/250 (38%), Positives = 142/250 (56%), Gaps = 10/250 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + L+DG +RAFYA P L+ DG P NA+ GF NM ++ + R + I + FD Sbjct: 8 ILLIDGHGIAFRAFYAIPELNAP-DGTPTNALVGFFNMFARVRHDQRPDEIYA----AFD 62 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +YP+YKA R PE Q+PL+ G+ +E EADD+I + Sbjct: 63 MKEPTFRHRLYPEYKATRRPTPEEFKIQVPLLHEMLPLLGVHIMERPSVEADDLIGSAAV 122 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 G V I+++DKD+MQ++ P + K E+ D+ H +K+G PP+ MV Sbjct: 123 QFASRGDEVLILTSDKDIMQVLRPGVKILRPGKGVSSFEEYDVPHFTEKYGFPPDTMVDY 182 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 +L GDSIDNIPG+PG+G KTA+ LLQ YG++E I+ +A +K +++ I E+ A Sbjct: 183 LSLMGDSIDNIPGVPGVGEKTASKLLQSYGSIEGIMEHAGELKPALQKK-IEEHGAQAVA 241 Query: 243 SRKLVMLRTD 252 +RKL L+ D Sbjct: 242 NRKLTRLKCD 251 >gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM 20098] gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM 20098] Length = 982 Score = 273 bits (699), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 152/438 (34%), Positives = 255/438 (58%), Gaps = 12/438 (2%) Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 ++++ +I +L L P++ + + +R++ P+ V+ ME G ++D L + Sbjct: 546 LQHAAIIAELARALAPQIDQREQFGLLQRMELPVSHVLYGMESQGAKVDMQRLTSMRDTF 605 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-- 660 + + +E +D +G NL SPKQLG +LF + +TKTG + T A L+++ Sbjct: 606 AADARQAQEIAWDYAGTTVNLQSPKQLGKVLFEDMGLKPTKRTKTGGYTTNADALQKLYF 665 Query: 661 NCGDN----PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 D+ + +L R+ +K+K A +L + N +R+HT + TGRL+S+ Sbjct: 666 TYADDERASGFLGALLRHRETNKLKQIVA-TLIDATNPADERIHTTFEQTVAATGRLSSV 724 Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +PNLQNIP + G++IR AF+ + L+S DYSQ+ELRI+AH++ L + F++ Sbjct: 725 DPNLQNIPNRNAAGREIRSAFVPGEGFESLMSCDYSQVELRIMAHLSGDESLIEAFKSGA 784 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D H+ VA+ + GV +++++P R H K +++ + YG+S + LA QL+I SEA +Y Sbjct: 785 DFHKYVASLVHGVPVDQITPDQRSHVKAMSYGLAYGLSSYGLAQQLKIRPSEAEALKAKY 844 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 F F +H+++E + R+ GY ET+FGRR ++ + S + R+ ERAA+NAPIQGS Sbjct: 845 FATFGKVHDFLESCVSEARKRGYTETMFGRRRYFPALKSTNRAARDAAERAALNAPIQGS 904 Query: 896 AADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPK 955 AADI + AMI ++L + + ++++LQIHDELV E+ E S ++ +ME A Sbjct: 905 AADIMKIAMIRARRALAEAGMKSRIILQIHDELVVEIAPGEREQVSALVRDAMENA---- 960 Query: 956 INLRVPLKVNIKVSNNWQ 973 ++L VPL V+ V +WQ Sbjct: 961 VHLDVPLDVSTGVGADWQ 978 Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 101/297 (34%), Positives = 157/297 (52%), Gaps = 11/297 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P+ + G NA+ GF ML +++ + + H AV F Sbjct: 13 LLVVDGHSLAFRAFFALPVENFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLAVAF 68 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRN + P YK R PE LL QLPL++ A G+ IE G+E DD+I T Sbjct: 69 DVKGGTFRNTMLPQYKGTRDAAPEDLLSQLPLIQSMLDALGVTYIEKPGYEGDDVIGTLA 128 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKEEK-IDIEHVIKKWGIPPEKMVC 181 + E+ + ++S D+D QLV T LY K+ K + E V K+ + P + Sbjct: 129 TMGEQAKYKTLVLSGDRDAFQLVDDWVTVLYPGHHFKDLKHMTPEAVFAKYKVTPAQYPD 188 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L AL G++ DNIPG+PG+G AA + +YG+LE I +A I KK E++ E + + Sbjct: 189 LAALRGETADNIPGVPGVGDGFAAKWINQYGSLEGICEHADEIGGKK-GESLRENLDQVK 247 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINRVATTYDCDAA 297 L+RK+ L D+ + + ++ L + ++ +LEF ++ R+ T++ A Sbjct: 248 LNRKVNALVRDIDLGVTVDDLTFGHFDAAKIDELFTSLEFGSRTKTRILKTFNGGEA 304 >gi|315655342|ref|ZP_07908242.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333] gi|315490282|gb|EFU79907.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333] Length = 932 Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 180/534 (33%), Positives = 288/534 (53%), Gaps = 40/534 (7%) Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K ++ K + LH +G M G DI ++ Y+++ + A + ++ L + E Sbjct: 411 KTVYDAKSLRHALHAHGWEMHGAVTDIKMLDYLVNPDGNRTKFAGVTKRLLGWEIDE--- 467 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLW------------LLLRPKLIVEKLLHVY 569 K S I KIS+ + +E + N Q W LL+ + +E+L H Sbjct: 468 --KPS-DISKISEQMTLDLGVELDGNSSAQPWPQTLINQAIYAYALLQMQPTLEQLAHFR 524 Query: 570 E-----RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 + L+ P+ ++ +ME TGI ID L + + + + +++ +D G + NLS Sbjct: 525 QVDGLLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREVNLS 584 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKST 683 SPKQL ++LFT+L+ P KTKTG T A+ LE++ +P ++ +L R K+ Sbjct: 585 SPKQLQEVLFTQLQLPKTKKTKTGY-TTDAKALEELARYNPHPFLEALLYHRDRIKLLQ- 642 Query: 684 YADSLPNHINKRTQ---RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739 + ++ +R R+HT + TGRL+S++PNLQNIP +T GQKIR AF+ Sbjct: 643 ----IVRNLRERVADDGRIHTTFGQTVAATGRLSSIDPNLQNIPARTVDGQKIREAFVPQ 698 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 P L++ADYSQIE+RI+AH++ L F + D+HR VAA ++GV ++V+P R Sbjct: 699 KPYTALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRS 758 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 H K ++ + YG+S + LA QL I + +A + YF RF + EY+ + + GY Sbjct: 759 HVKATSYGLAYGLSAYGLAAQLNISQRDAKQLMDTYFERFGKVREYLNQIVATATRVGYT 818 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 ET+ GRR + E+ S ++ + RAA+NAPIQGSAAD+ + AM+ V L +L ++ Sbjct: 819 ETMQGRRRYLPELRSTNRNVADNARRAALNAPIQGSAADLMKAAMLQVDADLRQEQLQSR 878 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +LLQ+HDELV EV E ++ +M LRVPL+V++ + NW+ Sbjct: 879 VLLQVHDELVLEVAPGETERLEALVRQAMTGVA----KLRVPLEVSVGIGPNWR 928 Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 94/314 (29%), Positives = 164/314 (52%), Gaps = 13/314 (4%) Query: 7 LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAFY+ P R G+ NA+ GF +ML +++ + +H F Sbjct: 6 LLVLDGHSLAFRAFYSRDPEHFRTSTGVYTNAVHGFFSMLLTMIRAEKP----THIGAAF 61 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR +IYPDYK R + P + Q+ ++ A GI + EADDI+AT Sbjct: 62 DLSRHSFRTDIYPDYKGGRAETPLEFIGQVENIQKMLSAMGIKWLTEPNVEADDILATLA 121 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYD--TVKEEKIDIEHVIK-KWGIPPEKMVC 181 K G V + S D+D QL+S T LY ++ E K +K ++ + P++ Sbjct: 122 TKGTKSGMEVLVSSGDRDSFQLISDDVTVLYPGRSISETKRMTPQAVKDRYDVWPQQYPE 181 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 + AL G+ DN+PG+P +G K AA + EYG+L+++L + +K KR EN+ ++ + Sbjct: 182 IAALVGEHADNLPGVPLVGEKVAASWINEYGSLDSLLEHRDELK-GKRGENLRQHVDDVL 240 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL---INRVATTYDCDAAN 298 +R+L LRTD+ + + LE L + + + LEF ++ I ++ + + N Sbjct: 241 RNRQLNRLRTDLQLPLSLEDLHWTGIDPQAIQEICEELEFKQMRTQILKLGQAFGVTSIN 300 Query: 299 IEPVVLDINTTENK 312 + +++++T+ + Sbjct: 301 GDSATMELDSTQTE 314 >gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043] gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043] Length = 891 Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 152/403 (37%), Positives = 237/403 (58%), Gaps = 10/403 (2%) Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LSGEKFNLSSPKQLGDIL 633 P+I V+++ME TGI +D D L + + + +++ +D + G++ NL SPKQL +L Sbjct: 493 PLIHVLAKMERTGIAVDVDGLSTLEETFAAKVTQAQQDCWDAIGGDQINLGSPKQLQVVL 552 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 F L P KTKTG T A L +++ ++P ++ +L R +K++ T + L + Sbjct: 553 FETLGMPKTKKTKTGY-TTDADALAELHAKTEHPFLEALLRHRDAAKLRVT-VEGLQKSV 610 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYS 751 + R+HT Y TGRL+S EPNLQN+PI+T+ G++IR F+ L+SADYS Sbjct: 611 SD-DGRIHTTYLQTIAATGRLSSTEPNLQNVPIRTEEGRRIRELFVVGDGYDALMSADYS 669 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIE+R++AH++ + L + F + D+HR V +++FGV E V+ MR K +++ + YG Sbjct: 670 QIEMRVMAHLSGDSGLIEAFRSGEDLHRFVGSQVFGVAPEDVTAAMRSKVKAMSYGLAYG 729 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 +S + L+ QL I EA ++ YF RF G+ Y+++ R G+ T+FGRR + + Sbjct: 730 LSAYGLSKQLAISTEEAKGLMEGYFARFGGVRAYLDEVVAEARGTGFTATMFGRRRYLPD 789 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 + S R + ER A+NAPIQGSAADI + AMI V ++L + T++LLQ+HDELV E Sbjct: 790 LTSDNRQRREMAERMALNAPIQGSAADIMKVAMIGVDRTLTEAGARTRILLQVHDELVLE 849 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 V +E +I+ M A + VPL VNI V +W + Sbjct: 850 VAADEQADVERIVREQMGHAA----EMDVPLDVNIGVGRSWHD 888 Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 105/293 (35%), Positives = 156/293 (53%), Gaps = 18/293 (6%) Query: 5 NHLFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 + L L+DG S YRAFYA P ++ +H NA+ GF +ML +L++ + + Sbjct: 2 SRLLLLDGHSLAYRAFYALPAENFSTVTGQH----TNAVYGFTSMLINMLRDEQP----T 53 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H V FD TFR E Y +YKA R + P+ QLPLV+ A I E+ G+EADD Sbjct: 54 HVVVAFDKSRHTFRTEEYAEYKAGRARTPDEFAGQLPLVKEVLDALRIRYCELDGYEADD 113 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIP 175 IIAT A+ +G V I S D+D QLVS T LY V E ++ + +K+G+P Sbjct: 114 IIATIASEADTKGVEVLICSGDRDTFQLVSDHVTILYPVRGVSEVWRMGPAQIEEKYGVP 173 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P + L A+ G+S DN+PG+PG+G KTAA + ++G LE I+ +IK K E + + Sbjct: 174 PARYSDLAAMVGESSDNLPGVPGVGPKTAAKWITQFGGLEGIVAGIDQIKGKA-GEALRD 232 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + + +R+L L D P+ ++ L + + LEF L +R+ Sbjct: 233 HLDQVLRNRRLNQLVKDAPVGCTIDDLERAQWSREEVHEVFDRLEFRVLRDRL 285 >gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331] Length = 903 Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 167/513 (32%), Positives = 276/513 (53%), Gaps = 12/513 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K VL G + G D L +Y++ GR S + ++A ++L +E+ Sbjct: 396 KVLHNAKNALRVLPEQGWRLEGISMDTALAAYLVKPGRRSFALDALAVEYLG---RELAP 452 Query: 523 SRKSSIPIDKISDSQVQEHAI-ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + S + +D + + A+ + +L L +L + ++ P +++ Sbjct: 453 APASDGQLAFGADDRAEADALMAQARAVLDLGDAFTTRLKEVGATELLYDMELPTSIMLA 512 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ++E GI D+ L+ + + + + + + G +FNL SPKQL ++LF +L P Sbjct: 513 RLERHGIAADRAHLESMEQQFAGAVQQAVKEAHAAVGREFNLGSPKQLQEVLFGELALPK 572 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG ++ + +L R+ +K++ T + L I R+HT Sbjct: 573 TKKTKTGYTTDADALAWLAAQTEHELPVIMLRHREQAKLRVTV-EGLIKTIAA-DGRIHT 630 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQIELR++AH Sbjct: 631 TFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETLMTADYSQIELRVMAH 690 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ L + F + D+H VA+++FGV V +MRR K +++ + YG+S F L+ Q Sbjct: 691 LSEDAGLIEAFTSGEDLHTTVASQVFGVEKSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 750 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I EA + YF RF G+ +Y+ + R GY ETI GRR + ++NS R Sbjct: 751 LNIEAGEARGLMDTYFLRFGGVRDYLHRVVEEARSTGYTETILGRRRYLPDLNSDNRQRR 810 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQG+AADI + AM+ V ++L + +L ++MLLQ+HDE+V E+ + E Sbjct: 811 EAAERMALNAPIQGTAADIVKVAMLKVDRALTEAELTSRMLLQVHDEIVLEIAKGEREQV 870 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +I+ M A + LR PL V++ V +W+ Sbjct: 871 EEILRREMSTA----VELRAPLDVSVGVGRDWE 899 Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 96/261 (36%), Positives = 143/261 (54%), Gaps = 11/261 (4%) Query: 6 HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L L+DG S YRAF+A P + G P NA+ GF +ML N+ ++ +HFAV Sbjct: 15 RLLLMDGHSLAYRAFFALPAENFTTATGQPTNAVYGFMSML----ANTLRDEAPTHFAVA 70 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD T+R + +P+YKANR K P+ Q+ L+ A + GFEADD+IAT Sbjct: 71 FDVSRKTWRAQEFPEYKANRSKTPDEFKGQVELIGELLDAMRADRFAVDGFEADDVIATL 130 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMV 180 AE GF V I++ D+D QL++ T LY T V E + E V +K+G+ P + Sbjct: 131 ATQAEAAGFEVLIVTGDRDSFQLITDNVTVLYPTKGVSELTRFTPEKVQEKYGLTPGQYP 190 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 AL GD DN+PGIPG+G KTAA + ++G+ ++ A +K K +N ++ + Sbjct: 191 DFAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERADEVKGKA-GQNFRDHLDAV 249 Query: 241 RLSRKLVMLRTDVPI-TIPLE 260 +++R L + DV + +P E Sbjct: 250 KMNRVLTEMVRDVELPKVPAE 270 >gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] Length = 920 Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 166/521 (31%), Positives = 283/521 (54%), Gaps = 27/521 (5%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K V +G S+ G D L +Y++ GR S ++ +++ ++L + Sbjct: 412 KVLHNAKGIMRVFAEHGWSVAGVTMDTALAAYLVKPGRRSFELDALSVEYLGRELSPAVA 471 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + +D + + A+ + IL L +L + ++ P+ ++++ Sbjct: 472 ADSGQLAFG--ADDEAERDALMIKARTILDLGEAFGGRLKDVGAAGLLHDMELPVSELLA 529 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +ME +GI D+ L+++ + + + + + G +FNL SPKQL ++LF +L P Sbjct: 530 RMERSGIAADRGWLERMEQQFAAAVQHAVQEAHAAVGHEFNLGSPKQLQEVLFGELGLPK 589 Query: 642 GAKTKTGQ--------WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 KTKTG W D E P+I +L R+ ++++ST + L I Sbjct: 590 TKKTKTGYTTDADALAWLAGQTDHEL------PVI--MLRHREQARLRSTV-EGLIKTIA 640 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQ 752 + R+HT ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQ Sbjct: 641 PGS-RIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGDGFESLMTADYSQ 699 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELR++AH+++ L + F + D+H VA+++F V+ V P+MRR K +++ + YG+ Sbjct: 700 IELRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFSVDKSAVDPEMRRKIKAMSYGLAYGL 759 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S F L+ QL I EA ++ +F RF G+ +Y+++ R GY ET+ GRR + ++ Sbjct: 760 SAFGLSQQLGITPDEARKLMENFFERFGGVRDYLQRVVEEARATGYTETMLGRRRYLPDL 819 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 S R + ER A+NAPIQG+AADI + AM+ V +L KL+++MLLQ+HDE+V E+ Sbjct: 820 TSDNRQRREMAERMALNAPIQGTAADIVKIAMLKVDAALTGEKLSSRMLLQVHDEIVLEI 879 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E +++ M A L PL V++ ++W+ Sbjct: 880 APGERERVEELVRREMTGA----FGLSAPLDVSVGSGSDWE 916 Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 104/280 (37%), Positives = 151/280 (53%), Gaps = 10/280 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G NAI GF +ML N+ ++ +H AV F Sbjct: 32 LLLLDGHSLAYRAFFALPAENFNTTTGQTTNAIYGFTSML----ANTLRDEQPTHLAVAF 87 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R+E + +YKANR P+ Q+ L+ A I + GFEADD+IAT Sbjct: 88 DVSRKTWRSEQFTEYKANRSASPDEFKGQVELIGELLDAMNITRFAVDGFEADDVIATLA 147 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE++GF V I++ D+D QLV+ T LY T V E + V +K+G+ P + Sbjct: 148 TQAEEQGFDVLIVTGDRDSFQLVTDHVTVLYPTKGVSELTRFTPGKVQEKYGLTPSQYPD 207 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ + ++ A +K K E + ++ E+ + Sbjct: 208 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFKELVERADEVKGKV-GEKLRDHLESVK 266 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 L+R+L L DV + E L + L L ALEF Sbjct: 267 LNRQLTELVRDVELAAGPEGLGRTPYDREALSVILDALEF 306 >gi|62184772|ref|YP_219557.1| DNA polymerase I [Chlamydophila abortus S26/3] gi|62147839|emb|CAH63585.1| putative DNA polymerase I [Chlamydophila abortus S26/3] Length = 869 Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 185/530 (34%), Positives = 301/530 (56%), Gaps = 14/530 (2%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSG-RSSHDI 505 ++++ L+ FF+ + G+NIK D L GI + D+ L ++++ G + S+ Sbjct: 350 DVITPLRDFFKRKDTEFYGYNIKRDNHALKNAGIHIHNITLDLALAEHLINGGAKISYQT 409 Query: 506 ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 + + K + + S+PI K S ++ E+ E + + ++ L +L V+ L Sbjct: 410 LLVDHGLVESAGKYGKEWGQLSLPILK-SPAKPAEYFGEFVSHLPKIKKSLLEELKVKGL 468 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 ++ ++ P+ V+ +E G+ +D + L+++ +S+ L L ++IY ++G FN+ S Sbjct: 469 EDLFFNMEMPLEKVLFTIERNGMPLDVEDLQELERTLSEELAILTDDIYTVAGTSFNIKS 528 Query: 626 PKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYA 685 PKQL D+L+ KL K ++ + + A L G++ I++ IL +R + K+ STY Sbjct: 529 PKQLSDVLYNKLGLTPIDKARSTKAEVLAALL-----GEHEIVEKILAFRAIEKLLSTYV 583 Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKK 744 +LP I+ T R+H ++ T+TGRLA +PNLQNIPI+++ G+ +R+AF + Sbjct: 584 KALPRQIDPHTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSERGRLLRKAFCDTRQNNY 643 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 +SADYSQIELR LAH+++ L F + D+H A+++F V +E+V+ Q R AKT+ Sbjct: 644 FLSADYSQIELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTKQQRMQAKTV 703 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 NF IIYG + L+ L+I SEA I YF R+P + +I +T N +N V+T+ G Sbjct: 704 NFGIIYGQQAYGLSKILKISVSEAQKLIDAYFDRYPAVARFINETINEACENLRVKTLLG 763 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQI 924 R D +S R + R A+N IQGSAA++ + AM+ + +LE KL ++MLLQI Sbjct: 764 RERIIDNWTEFSNS-RAASGRLAVNTRIQGSAAELIKLAMLQLAAALEKRKLRSRMLLQI 822 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL+FEVPEEE ++ ME A + L VPL VNI + NW E Sbjct: 823 HDELIFEVPEEEKEEVQTLVRDIMESAMI----LSVPLVVNILIGKNWAE 868 Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 105/322 (32%), Positives = 163/322 (50%), Gaps = 23/322 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 +F++D S F++RA++A P + + G A+ GF + KL+ KE H +FD Sbjct: 4 VFILDASGFVFRAYFALPDM-KNSSGEGTQAVFGFIRSMNKLI----KEFSPKHMVAVFD 58 Query: 67 YPA-VTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P R EIY DYK +R K E L Q+P+V+ G+ +EI+G EADD+IA+ T Sbjct: 59 GPNNKQSRREIYADYKIHREKQDENLYQQIPIVKEYCHLLGLRYLEIEGVEADDVIASIT 118 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-EKIDIEHVIKKWGIPPEKMVCLQA 184 A EG V + + DKDL+QLV P ++ K ID V+ +G+PP ++ A Sbjct: 119 KQAVSEGCEVCLCTADKDLLQLVGPNVVAWNPWKAGPPIDENSVVDIYGVPPSRIADYLA 178 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD+ DNIPG+ G G + A LLQ+Y ++E IL + + + I E + LS+ Sbjct: 179 LVGDTSDNIPGVSGCGPQKATALLQKYHSVEGILEHLDELTGSTHK-MISEQKDVLLLSK 237 Query: 245 KLVMLRTDVPI-------TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 L +L +VP+ PL + E+ N +F F L+ V + D Sbjct: 238 DLAVLDNNVPLPMGISGFAFPLHEVPQEEIN-----TFYMRHGFKTLVQPVEEASNIDIE 292 Query: 298 ---NIEPVVLDINTTENKGIAI 316 + +P+V ++T + K +A Sbjct: 293 IIHSCQPLVRVLSTLQGKSVAF 314 >gi|298346797|ref|YP_003719484.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] gi|298236858|gb|ADI67990.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] Length = 932 Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 179/534 (33%), Positives = 288/534 (53%), Gaps = 40/534 (7%) Query: 464 KIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K ++ K + LH +G + G DI ++ Y+++ + A + ++ L + E Sbjct: 411 KTVYDAKSLRHALHAHGWELHGAVTDIKMLDYLVNPDGNRTKFAGVTKRLLGWEIDE--- 467 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLW------------LLLRPKLIVEKLLHVY 569 K S I KIS+ + +E + N Q W LL+ + +E+L H Sbjct: 468 --KPS-DISKISEQMTLDLGVELDGNSSAQPWPQTLINQAIYAYALLQMQPTLEQLAHFR 524 Query: 570 E-----RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 + L+ P+ ++ +ME TGI ID L + + + + +++ +D G + NLS Sbjct: 525 QVDGLLELENPLSYILEKMEYTGIGIDTIYLDEYAQSLQSEVAMAQQSAFDSIGREVNLS 584 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSKIKST 683 SPKQL ++LFT+L+ P KTKTG T A+ LE++ +P ++ +L R K+ Sbjct: 585 SPKQLQEVLFTQLELPKTKKTKTGY-TTDAKALEELARYNPHPFLEALLYHRDRIKLLQ- 642 Query: 684 YADSLPNHINKRTQ---RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-S 739 + ++ +R R+HT + TGRL+S++PNLQNIP +T GQKIR AF+ Sbjct: 643 ----IVRNLRERVADDGRIHTTFGQTVAATGRLSSIDPNLQNIPARTVDGQKIREAFVPQ 698 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 P L++ADYSQIE+RI+AH++ L F + D+HR VAA ++GV ++V+P R Sbjct: 699 KPYAALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRS 758 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 H K ++ + YG+S + LA QL I + +A + YF RF + EY+ + + GY Sbjct: 759 HVKATSYGLAYGLSAYGLAAQLNISQRDAKQLMDTYFERFGKVREYLNQIVATATRVGYT 818 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 ET+ GRR + E+ S ++ + RAA+NAPIQGSAAD+ + AM+ V L +L ++ Sbjct: 819 ETMRGRRRYLPELRSTNRNVADNARRAALNAPIQGSAADLMKAAMLQVDADLRQEQLQSR 878 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +LLQ+HDELV EV E ++ +M LRVPL+V++ + NW+ Sbjct: 879 VLLQVHDELVLEVAPGETERLETLVRQAMTGVA----KLRVPLEVSVGIGPNWR 928 Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 94/314 (29%), Positives = 162/314 (51%), Gaps = 13/314 (4%) Query: 7 LFLVDGSSFIYRAFYA-TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L ++DG S +RAF++ P R G+ NA+ GF +ML +++ + +H F Sbjct: 6 LLVLDGHSLAFRAFFSRDPEHFRTSTGVYTNAVHGFFSMLLTMIRAEKP----THIGAAF 61 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR +IYPDYK R + P + Q+ ++ A GI + EADDI+AT Sbjct: 62 DLSRHSFRTDIYPDYKGGRAETPPEFIGQVENIQKMLSAMGIKWLTEPNVEADDILATLA 121 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-PTTCLYD--TVKEEKIDIEHVIK-KWGIPPEKMVC 181 K G V + S D+D QL+S T LY ++ E K +K ++ + P++ Sbjct: 122 TKGTKSGMEVLVSSGDRDSFQLISDDVTVLYPGRSISETKRMTPQAVKDRYDVWPQQYPE 181 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 + AL G+ DN+PG+P +G K AA + EYG+L+++L + +K KR EN+ ++ + Sbjct: 182 IAALVGEHADNLPGVPLVGEKVAASWINEYGSLDSLLEHRDELK-GKRGENLRQHIDDVL 240 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL---INRVATTYDCDAAN 298 +R+L LRTD+ + + LE L + + LEF ++ I R+ + + N Sbjct: 241 RNRQLNRLRTDLQLPLSLEDLHWTGFDPQAIQEICDELEFKQMRTQILRLGQAFGVTSIN 300 Query: 299 IEPVVLDINTTENK 312 + ++++ T+ + Sbjct: 301 GDSATMELDRTQTE 314 >gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] Length = 908 Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 172/516 (33%), Positives = 271/516 (52%), Gaps = 15/516 (2%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 H K L G+ + G D L +Y+ R ++D+ +A + Y R+E+ Sbjct: 395 HAAKEASHALAGRGLDLEGVTFDTELAAYLCQPDRRAYDLPDLA---IGYLRRELGGDDG 451 Query: 526 SSI---PID-KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 SS +D ++ + A + + L +L ++ + L+ P+ V++ Sbjct: 452 SSAGQGALDLEVDGADEGRRAAVRAAAVRDLVDVLGGEVADRGATTLLSDLELPLQAVLA 511 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 ++E TGI ID L + E + + Y + G + NL SPKQL ++LF +L+ P Sbjct: 512 RLERTGIAIDHAYLSGLEREFDGQVQGAAADAYAVIGREVNLGSPKQLQEVLFDQLRMPK 571 Query: 642 GAKTKTGQWKTTAQDLEQINC-GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 + KTG + T A L + +P ++++L R +++ T L + + R+ Sbjct: 572 TKRIKTG-YTTDANALTDLFARTGHPFLEHLLAHRDAIRLRQTVEGLLRSVADD--GRIR 628 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILA 759 T + TGRL+S +PNLQNIPI+TD G++IRRAF+ P L++ADYSQIE+RI+A Sbjct: 629 TTFQQTIAATGRLSSADPNLQNIPIRTDAGRQIRRAFVVGPGYATLLTADYSQIEMRIMA 688 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLAT 819 H++ L F + D+H V + +FGV ++V+P MR K +++ + YG+S + L+ Sbjct: 689 HLSGDEGLIAAFRSGEDLHSYVGSRVFGVPTDEVTPTMRSKIKAMSYGLAYGLSSYGLSQ 748 Query: 820 QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSI 879 QL I SEAA + YF RF G+ +Y+ + R GY T+ GRR + ++ S Sbjct: 749 QLAIEVSEAAALMTDYFERFGGVRDYLTGVVDQARATGYTATVLGRRRYLPDLTSDNRQR 808 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 R ER A+NAPIQGSAAD+ + AM+ V L L ++MLLQ+HDELV EV E E Sbjct: 809 REAAERMALNAPIQGSAADLIKVAMLGVDGELTRRGLRSRMLLQVHDELVLEVAEGEREE 868 Query: 940 ASQIIVHSMEKA--CLPKINLRVPLKVNIKVSNNWQ 973 +++ M A LP L VPL V++ V +W Sbjct: 869 VEELVRTQMAAAGSGLPDGPLDVPLDVSVGVGESWH 904 Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 111/291 (38%), Positives = 155/291 (53%), Gaps = 16/291 (5%) Query: 6 HLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L L+DG S YRAF+A P+ + G P NA+ GF +ML LL++ +H AV Sbjct: 15 RLLLIDGHSMAYRAFFALPVENFSTSSGQPTNAVFGFTSMLANLLRDEEP----THVAVA 70 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR E YK NR PE Q+ ++R + ++ GFEADDI+AT Sbjct: 71 FDAGRTTFRTERLESYKGNRSATPEPFRGQVDVIRQLLATMHVQVLDKPGFEADDILATL 130 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMV 180 T A ++G V + S D+D QLV P T LY V E ++ E V K+G+PP + Sbjct: 131 TAQAGEQGMEVLVCSGDRDTFQLVGPQVTVLYPVRGVSEMSRMTPEAVEAKYGLPPARYP 190 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYA 237 L AL G++ DN+PG+PG+G KTAA + +Y L +L NA RI K R N+ + A Sbjct: 191 DLAALVGETSDNLPGVPGVGPKTAAKWITQYDGLAGVLENAERITGKAGESLRANLAQVA 250 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 L+R+L LRTD+ + + E L + + L L LEF L +R+ Sbjct: 251 ----LNRELNELRTDLDLPLGPEDLAVRPWDRAALHQMLDELEFRTLRDRL 297 >gi|331703661|ref|YP_004400348.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802216|emb|CBW54370.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 911 Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 193/627 (30%), Positives = 330/627 (52%), Gaps = 54/627 (8%) Query: 372 VNTKDIQQWVQKLETIGSASFKIITDTMDAFH-SKPIAIAISTLDQKDDTSFKVETIFID 430 ++ K I W + E S ++ + + +H K I I IS ++D Sbjct: 309 LDVKIINSWSKDYE--DSINYLYVESLEEDYHKDKIIGIGISN---------NKGNFYLD 357 Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--HRYGISMRGFE- 487 Q S ++T S ++F N + K ++IK +L H+Y + F+ Sbjct: 358 FKNKAQQLSFFEDTTLSSTNSLFEEFLNNPNLKKYTYDIKKTTYLLKNHKYNVLASNFDF 417 Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA----- 542 D M+ Y L++ S D++S + +++ + ID+I V+++ Sbjct: 418 DFMVACYSLNANVVS-DLSS---------QIKLVDNLVELETIDEIFGKGVKKNPDIDLD 467 Query: 543 IENSNVILQLWLLLR-PKLIVEKL-----LHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 I++ + + +LL + ++E+L +Y ++D P+I+V+ +E+ GI ID++ LK Sbjct: 468 IKSKYISKKAYLLKKYSDQLIEQLKQTNTYDLYLKIDHPLIEVLYDIEVQGILIDKEQLK 527 Query: 597 QVSAEISKNLLSLEENIYDLSGEK----FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 + +I K + +E + L E+ FN SSPKQ+ ++LF KLK P+ K T Sbjct: 528 LQTQQILKKINHIEGQMKILVAEEIDNNFNFSSPKQIQELLFDKLKLPNLEKG------T 581 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 T++++ + +PII +LE R+ +K+ +TY I +VHT ++ T TGR Sbjct: 582 TSKEVLEKLITYHPIINLLLEHRKYTKLYTTYLKGFEKFI-FDDNKVHTIFNHTLTNTGR 640 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S PN+QNI I+ + +++R+ FI+ K +S DYSQIELR+LA ++K T L F Sbjct: 641 LSSSYPNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFN 700 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH A IF ++ ++++ + RR AK NF I+YG++ F LA+ L I ++A I Sbjct: 701 QNADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLASDLNISVNQAKQMI 760 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 K Y+ FP + ++ EK GY+ T+ RR + +E+NS +IR +R A+N PI Sbjct: 761 KDYYSAFPSLLDFKEKQVEIATSQGYITTLSNRRRYINELNSTNHNIRQFGKRIAVNTPI 820 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA- 951 QG+A+DI + AMIS++K L++ L +++ QIHDE++ EV + ++ +I+VH +E A Sbjct: 821 QGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQLEQTKKIVVHELENAL 880 Query: 952 --CLPKINLR----VPLKVNIKVSNNW 972 +NL+ V LKV V W Sbjct: 881 EKLFLDLNLKEQVVVKLKVGESVGKTW 907 Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 103/302 (34%), Positives = 152/302 (50%), Gaps = 21/302 (6%) Query: 7 LFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + +VDG+S I+RAFYAT L + G+ NA F NML ++ + H Sbjct: 5 ILVVDGNSLIFRAFYATAYSPNTSLLKTKSGVLTNAAYSFINMLLSVIH---QRGPYDHI 61 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 + FD TFR+++ DYKANR K P L+ Q +VR I E + EADDI+ Sbjct: 62 LIAFDKGKKTFRHDLLSDYKANRIKTPNELVEQFSIVREFLTKANIQWFEQENIEADDIV 121 Query: 122 ATYTYIAEKE--GFAVTIISTDKDLMQLVS-PTTCL--YDTVKE-EKIDIEHVIKKWGIP 175 + AEK+ I+S+DKD+ QL++ CL V E E++D + +KW I Sbjct: 122 GSICKYAEKQFDNLQAEILSSDKDMYQLITNKVICLNPIQGVNELEEVDTNKLFEKWQIL 181 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P ++ +A+ GDS DN+ G+ GIG K A L+Q+Y NLENI N +IK + + + + Sbjct: 182 PNQVPDYKAIVGDSSDNLKGVNGIGQKGAIKLIQQYQNLENIYNNLEQIKGAIKTK-LEQ 240 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVATTYD 293 + A L + L ++TDV LE+ + D N + FL E L R + Sbjct: 241 DKKMAFLCKDLATIKTDV----TLENFSFKKLDFNVDNIYEFLNKYEMYSLKKRFTNILN 296 Query: 294 CD 295 D Sbjct: 297 LD 298 >gi|297571466|ref|YP_003697240.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595] gi|296931813|gb|ADH92621.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595] Length = 898 Score = 270 bits (690), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 170/549 (30%), Positives = 281/549 (51%), Gaps = 36/549 (6%) Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSH 503 +++E + + + KIGH++K G ++ G D + +Y+L + ++ Sbjct: 364 ISEEDSAAFSALLSDPNVGKIGHSMKVQIHAWLGEGYTLAGIVGDTEIDAYLLHPDQRTY 423 Query: 504 DIASIAQKWLSY----TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPK 559 D + Q++L+ ++ L +D ++ V H + ++ Sbjct: 424 DFTDLVQRYLAIDLGGGAQDTLGIGLDGEIVDDLAARAVATHDLRDA---------FARA 474 Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 L E+ ++ + DV+++ME GI +D D L ++ A+ + ++ G+ Sbjct: 475 LETEEQSDALREMELRVCDVLARMEQRGIAVDADQLARLHADFDARVNQAATQAWEAIGD 534 Query: 620 K-FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN------------CGDNP 666 NLSSPKQL +LF +L P KTK+G + T A LEQ+ G N Sbjct: 535 SSVNLSSPKQLQAVLFDQLGLPKTKKTKSG-YTTNADALEQLLVKISMREDDQALAGQN- 592 Query: 667 IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK 726 + +L R K++ + + L + QR+ T Y TGRL+S +PNLQNI + Sbjct: 593 FLTGLLAHRDAIKLRQS-VEGLQRSLGD-DQRIRTTYQQTVAATGRLSSTDPNLQNIHAR 650 Query: 727 TDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 T+ GQKIR F+ L++ADYSQIE+R++AH++ L F D+H VA+ + Sbjct: 651 TEEGQKIREVFVPGDGYDYLMTADYSQIEMRLMAHLSGDAELIVAFNAGADLHNYVASRV 710 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 FGV +V+P R K +++ ++YG+S F L+ QL+IP EA + + YF RF + EY Sbjct: 711 FGVAESEVTPAQRSKIKAMSYGLVYGLSAFGLSAQLKIPVPEAQNLMDGYFSRFGRVKEY 770 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 ++ R++G+ +T+ GRR + E++S +R ER A+NAPIQGSAADI + AM+ Sbjct: 771 LDGLVAQARKDGFTQTLLGRRRYLPELSSTNRQVRESAERMALNAPIQGSAADIIKIAML 830 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 +V + L +L++++LLQ+HDELV EV E I+ M A L VPL V Sbjct: 831 NVERELAAAQLSSRVLLQVHDELVLEVAASEAEQVEAIVREQMGNAW----ELSVPLSVG 886 Query: 966 IKVSNNWQE 974 + + NW++ Sbjct: 887 VGIGRNWRD 895 Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/292 (36%), Positives = 152/292 (52%), Gaps = 15/292 (5%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 E + L+DG S +R+F+A P S R G NA+ GF N L +L+ + + +H A Sbjct: 3 EKTMLLLDGHSMAFRSFFALPADSFRTAQGQYTNAVHGFINTLLRLINDYKP----THIA 58 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD P TFR Y +YK R K PE Q+ +++ GI + + +EADDI+A Sbjct: 59 VAFDLPGGTFRTREYGEYKGGRAKTPEEFKGQIGVIQEVLNVMGISWLTVDDYEADDIVA 118 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEK--IDIEHVIKKWGIPPEKM 179 T + E EG V I S DKD QLVS T+ +Y + + ++ V ++ G+ P++ Sbjct: 119 TLSARGEAEGMNVFIASGDKDSYQLVSDLTSVVYPMPRSQMLLLNPAGVEERTGVRPDQY 178 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEY 236 L AL G+ DN+PG+PG+G KTAA L +YG L +L +A IK K R+NI Sbjct: 179 SDLAALVGEKADNLPGVPGVGPKTAAKWLNQYGGLGQLLDHAEEIKGKAGQSLRDNI--- 235 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E RL+R L L D+ I L+ L+ L L+FT L RV Sbjct: 236 -EQVRLNRVLNKLVRDLDIVPNLDQLVPMGVERQALHELFDTLDFTTLRTRV 286 >gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] Length = 909 Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 165/513 (32%), Positives = 277/513 (53%), Gaps = 13/513 (2%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K V +G + G D L +Y++ GR S + +++ + Y +E+ Sbjct: 403 KVMHNAKDALRVFPEHGWEIAGVTMDTALAAYLVKPGRRSFALDALS---IEYLHRELAP 459 Query: 523 SRKSSIPIDKISDSQVQEHAI-ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVS 581 + + +D Q + A+ + +L L L KL + + ++ P +++ Sbjct: 460 AAADG-QLAFGTDEQAEADALMSQARAVLDLGEALGGKLEEVGAVELLHDVELPTSLLLA 518 Query: 582 QMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS 641 +ME GI D+ L+ + + + + + + G +FNL SPKQL ++ F +L P Sbjct: 519 RMERHGIAADRAHLEAMEQQFAGAVQQAVKEAHAAVGHEFNLGSPKQLQEVFFGELNLPK 578 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 KTKTG ++ + +L R+ ++++ST + L I R+HT Sbjct: 579 TKKTKTGYTTDADALAWLAAQTEHELPVIMLRHREQARLRSTV-EGLIKTIAA-DGRIHT 636 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAH 760 +S TGRL+S +PNLQN+P++TD G+ IRR F+ + L++ADYSQIELR++AH Sbjct: 637 TFSQTVAATGRLSSTDPNLQNVPVRTDEGRAIRRGFVVGEGYESLMTADYSQIELRVMAH 696 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 +++ L + F + D+H VA+++F V V +MRR K +++ + YG+S F L+ Q Sbjct: 697 LSEDLGLIEAFTSGEDLHTTVASQVFSVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQ 756 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L I +EA + YF RF G+ +Y+ + + R GY T+ GRR + ++NS R Sbjct: 757 LGIEPAEARVLMDTYFERFGGVRDYLRRVVDEARATGYTATMLGRRRYLPDLNSDNRQRR 816 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTA 940 ER A+NAPIQG+AADI + AM++V ++L D KL++++LLQ+HDE+V EV E Sbjct: 817 ESAERMALNAPIQGTAADIVKVAMLNVDRALTDAKLSSRLLLQVHDEIVLEVAPGEREQV 876 Query: 941 SQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 ++ H M A ++LR PL V++ +W+ Sbjct: 877 ETLVRHEMSSA----VSLRAPLDVSVGAGPDWE 905 Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 103/279 (36%), Positives = 148/279 (53%), Gaps = 10/279 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G NAI GF +ML N+ ++ +HFAV F Sbjct: 23 LLLMDGHSLAYRAFFALPAENFTTASGQTTNAIYGFASML----ANTLRDEAPTHFAVAF 78 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R+ +P+YKANR K P+ Q+ L+ I GFEADD+IAT Sbjct: 79 DVSRKTWRSADFPEYKANRSKTPDEFKGQVELIGELLDTMNAERFAIDGFEADDVIATLA 138 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE GF V I++ D+D QLVS TT LY T V E + V +K+G+ P++ Sbjct: 139 TQAEAAGFEVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPAKVEEKYGLTPQQYPD 198 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTA + ++G+ ++ +A +K K + + ++ E + Sbjct: 199 FAALRGDPSDNLPGIPGVGEKTATKWINQFGSFAALVEHADEVKGKV-GQALRDHLEAVK 257 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALE 280 L+R L L DV + + L + L FL+ LE Sbjct: 258 LNRHLTELVRDVELPKAVTDLERAPYDRTALKGFLEVLE 296 >gi|312880258|ref|ZP_07740058.1| DNA polymerase I [Aminomonas paucivorans DSM 12260] gi|310783549|gb|EFQ23947.1| DNA polymerase I [Aminomonas paucivorans DSM 12260] Length = 844 Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 140/404 (34%), Positives = 234/404 (57%), Gaps = 9/404 (2%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 LD P+ V+++ME GI +D+ L + + LE + +GE+ NL SPKQ+ Sbjct: 442 LDLPLAPVLARMESRGIGVDEGALASLDVRLEGRSRELEALVRAEAGEEVNLQSPKQMAA 501 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP---IIKNILEWRQLSKIKSTYADSL 688 +LF +L P KTKTG + T LE++ +P + +++LE R+++K+++ + Sbjct: 502 LLFERLGLPPLKKTKTG-FSTDVGVLEELAKLPDPLSRVPRHLLEHREVAKLRTGFVQPF 560 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747 ++ +++ + +T TGRL+S +PN+QN+P+ + + RR + + P + +S Sbjct: 561 LKQAHRDGGHIYSTFEQTATGTGRLSSRDPNVQNLPVFGEWAEAFRRCLVPTSPKDRFLS 620 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIELR+LAH+ L Q FE DIHR A+ ++GV E+VS + RR AK +NF Sbjct: 621 ADYSQIELRVLAHLCGEPRLVQAFEAGRDIHRETASWVYGVAAEEVSAEQRRFAKVVNFG 680 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 ++YG+S LA ++ + R EAA I RYF P + EY+E+T + GY ++FGR Sbjct: 681 LLYGMSAHGLAQRMGVGRPEAAQIIDRYFSVLPRVREYLEETVREAKARGYTVSLFGRVR 740 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 E+++ + +R A+N+PIQ +AADI + AM+ + + L L +++LQ+HD Sbjct: 741 PLGEVSTVEGRGGGALDRVAVNSPIQSTAADIAKVAMVDLERRLRGSGLPVRLVLQVHDS 800 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 LV +VP+E + A+ ++ ME+A + L VPL+ K ++ Sbjct: 801 LVCQVPQEALEEAASLLRDVMERA----VTLSVPLETVTKAGSS 840 Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 107/293 (36%), Positives = 152/293 (51%), Gaps = 19/293 (6%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E LVDG +RAFYA P LS DG PV+AI GF NML K+L+ R + + + Sbjct: 3 EPRFLLVDGHGLAFRAFYALPELS-APDGTPVHAILGFLNMLQKVLEEQRPQG----WGL 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD T R +IY DYK R PE QLPL+ +A G +G EADD+IA+ Sbjct: 58 FFDPKGETERKKIYGDYKLGRRPTPEGFKIQLPLLLELLEALGHRVHVREGVEADDLIAS 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKK-WGIPPEKM 179 T ++ +G ++S DKDL+Q++SP + V E ++ E + ++ +G P M Sbjct: 118 -TALSLGKGREALVLSADKDLLQVLSPGVRVMRPQKGVSEFRLFDEALFREEYGFAPSAM 176 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 ALTGD++D+IPG+ GIG K A L+ +G+LE I + + K +R + E E Sbjct: 177 ADYLALTGDAVDHIPGVAGIGDKGARALVSHHGSLEGIYAHLGELP-KGQRGKLEEGREQ 235 Query: 240 ARLSRKLVMLRTDVPI---TIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 A SR LV VP+ IP E LI + R + L +L+ R+ Sbjct: 236 AFASRALV-----VPLPTEAIPAEGLIPAPRDDERARTLCSRLGLKQLLKRLG 283 >gi|294790756|ref|ZP_06755914.1| DNA polymerase I [Scardovia inopinata F0304] gi|294458653|gb|EFG27006.1| DNA polymerase I [Scardovia inopinata F0304] Length = 976 Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 145/432 (33%), Positives = 251/432 (58%), Gaps = 12/432 (2%) Query: 549 ILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS 608 IL L L P L + + + + ++ P+ V+++ME+TG +D L+ + + Sbjct: 546 ILALHQLFYPVLEKRQEISLLKDIELPVSTVLARMELTGAGVDYSRLRNMYDSFAAQAAQ 605 Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NC 662 E +D +G++ NL SPKQL +LF + KTK+G T A L+++ N Sbjct: 606 AEHIAWDQAGKQINLQSPKQLQAVLFDDMGLEPTRKTKSGGRTTNAAALQELYIRSVHNE 665 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 N + +L R+++K+K +L + +N R+HT + TGRL+S +PNLQN Sbjct: 666 RANTFLGALLRHREVNKLKQI-VQTLMDSVNTSDGRIHTTFEQTVAATGRLSSTDPNLQN 724 Query: 723 IPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 IP + G++IR AF+ S L+S+DYSQ+ELR++AH++ L + F + D H+ V Sbjct: 725 IPNRNVEGREIRAAFVPSDGYLSLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFHKYV 784 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 A+ ++ V +++++P R H K +++ + YG+S + LA QL I +++ +YF F Sbjct: 785 ASLVYQVPLDQITPDQRSHIKAMSYGLAYGLSTYGLAQQLGISPAQSDQLKAKYFSTFGK 844 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 +H+Y+E + ++ GY T+FGRR ++ ++ S + +R+ +RAA+NAPIQGSAADI + Sbjct: 845 VHDYLESLVSQAKKRGYTTTMFGRRRYFPDLLSSRRQLRDAAQRAALNAPIQGSAADIMK 904 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 AM SL++ + ++++LQIHDELV E+ E + ++ ++ME+A + L VP Sbjct: 905 IAMNKAATSLDEAGVKSRIILQIHDELVVELASGEEEEVTALVKNAMEEA----VELAVP 960 Query: 962 LKVNIKVSNNWQ 973 L V+ + ++WQ Sbjct: 961 LDVSTGIGSDWQ 972 Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 104/285 (36%), Positives = 156/285 (54%), Gaps = 20/285 (7%) Query: 9 LVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 +VDG S +RA++A P S DG NA+ GF ML ++L++ + SH A+ FD Sbjct: 1 MVDGHSLAFRAYFALPADSFSTSDGQVTNAVYGFTTMLAQVLRDEKP----SHVAIAFDV 56 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI 127 TFRN + P YK R PE LL QLPL++ A I +E +GFE DDIIAT + Sbjct: 57 KGGTFRNRMLPQYKGTRDAAPEDLLSQLPLIQQVLSALDISFVEKEGFEGDDIIATLATM 116 Query: 128 AEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVC 181 EK G+ ++S D+D QLV + T LY D++H V K+ + P + Sbjct: 117 GEKAGYETFVLSGDRDAFQLVDQSITVLYP--GHHFKDLKHMTPQAVFDKYKVWPNQYPD 174 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYAE 238 L A+ G+ DNIPG+PG+G AA + E+G+L+ I+ +A +I KK R+N+ + Sbjct: 175 LAAMRGEQADNIPGVPGVGDGYAAKWINEFGSLQEIIDHADQISGKKGQALRDNV----D 230 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTK 283 RL+R++ L DV + + L+ IL + N ++ +L+F K Sbjct: 231 QVRLNRRVNALVRDVDLPVSLDDFILHEPNIEKVNEVFSSLQFGK 275 >gi|256384245|gb|ACU78815.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str. GM12] gi|256385078|gb|ACU79647.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str. GM12] gi|296455971|gb|ADH22206.1| DNA polymerase I superfamily [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 911 Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 191/627 (30%), Positives = 330/627 (52%), Gaps = 54/627 (8%) Query: 372 VNTKDIQQWVQKLETIGSASFKIITDTMDAFH-SKPIAIAISTLDQKDDTSFKVETIFID 430 ++ K I W + E S ++ + + +H K I I IS ++D Sbjct: 309 LDVKIINSWSKDYE--DSINYLYVESLEEDYHKDKIIGIGISN---------NKGNFYLD 357 Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--HRYGISMRGFE- 487 Q S ++T S ++F N + K ++IK +L H+Y + F+ Sbjct: 358 FKNKAQQLSFFEDTTLSSTDSLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDF 417 Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----A 542 D M+ Y L++ S D+++ + +++ + ID+I V+++ Sbjct: 418 DFMVACYSLNANVVS-DLSN---------QIKLVDNLIELETIDQIFGKGVKKNPDIDLD 467 Query: 543 IENSNVILQLWLLLR-PKLIVEKL-----LHVYERLDKPMIDVVSQMEITGIQIDQDLLK 596 I++ + + +LL + ++E+L +Y ++D P+I+V+ +E+ GI ID++ LK Sbjct: 468 IKSKYISKKAYLLKKYSDQLIEQLKQTNTYDLYLKIDHPLIEVLYDIEVQGILIDKEQLK 527 Query: 597 QVSAEISKNLLSLEENIYDLSGEK----FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKT 652 + +I K + +E + L E+ FN SSPKQ+ ++LF KLK P+ K T Sbjct: 528 LQTQQILKKINHIEGQMKILVAEEIDNNFNFSSPKQIQELLFDKLKLPNLEKG------T 581 Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 T++++ + +PII +LE R+ +K+ +TY I + +VHT ++ T TGR Sbjct: 582 TSKEVLEKLITYHPIINLLLEHRKYTKLYTTYLKGFEKFIFDDS-KVHTIFNHTLTNTGR 640 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE 772 L+S PN+QNI I+ + +++R+ FI+ K +S DYSQIELR+LA ++K T L F Sbjct: 641 LSSSYPNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFN 700 Query: 773 NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYI 832 + DIH A IF ++ ++++ + RR AK NF I+YG++ F LA+ L I ++A I Sbjct: 701 QNADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLASDLNISVNQAKQMI 760 Query: 833 KRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPI 892 K Y+ FP + E+ EK GY+ T+ RR + +E+NS +IR +R A+N PI Sbjct: 761 KDYYSAFPSLLEFKEKQVEIATSQGYITTLSNRRRYINELNSTNHNIRQFGKRIAVNTPI 820 Query: 893 QGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA- 951 QG+A+DI + AMIS++K L++ L +++ QIHDE++ EV + ++ +I+V +E A Sbjct: 821 QGTASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVDDNQLEQTKRIVVSELENAL 880 Query: 952 --CLPKINLR----VPLKVNIKVSNNW 972 +N++ V LKV V W Sbjct: 881 EKLFLDLNIKEQVVVKLKVGESVGKTW 907 Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 103/302 (34%), Positives = 153/302 (50%), Gaps = 21/302 (6%) Query: 7 LFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + +VDG+S I+RAFYAT L + G+ NA+ F NML ++ + H Sbjct: 5 ILVVDGNSLIFRAFYATAYSPNTSLLKTKSGVLTNAVYSFINMLLSVIH---QRGPYDHI 61 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 + FD TFR+++ DYKANR K P L+ Q +VR I E + EADDI+ Sbjct: 62 LIAFDKGKKTFRHDLLSDYKANRIKTPNELVEQFSVVREFLTKANIQWFEQENIEADDIV 121 Query: 122 ATYTYIAEKE--GFAVTIISTDKDLMQLVS-PTTCL--YDTVKE-EKIDIEHVIKKWGIP 175 + AEK+ I+S+DKD+ QL++ CL V E E++D + +KW I Sbjct: 122 GSICKYAEKQFDNLQAEILSSDKDMYQLITNKVICLNPVQGVNELEEVDTNKLFEKWQIL 181 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P ++ +A+ GDS DN+ G+ GIG K A L+Q+Y NLENI N +IK + + + + Sbjct: 182 PNQVPDYKAIVGDSSDNLKGVNGIGQKGAIKLIQQYQNLENIYNNLEQIKGAIKTK-LEQ 240 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVATTYD 293 + A L + L ++TDV LE+ + D N + FL E L R + Sbjct: 241 DKKMAFLCKDLATIKTDV----ILENFSFKKLDFNVDNIYEFLNKYEMYSLKKRFTNILN 296 Query: 294 CD 295 D Sbjct: 297 LD 298 >gi|302546246|ref|ZP_07298588.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653] gi|302463864|gb|EFL26957.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653] Length = 477 Score = 267 bits (682), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 158/485 (32%), Positives = 267/485 (55%), Gaps = 26/485 (5%) Query: 499 GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLR 557 GR S ++ +++ ++L + + +D Q ++ A+ + +L L R Sbjct: 5 GRRSFELDALSVEYLGRELSPAAAADSGQLAFG--ADEQAEQDALMIKARTVLDLGEAFR 62 Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617 +L + ++ P ++++++E +GI D+D L ++ + + + + + Sbjct: 63 GRLEEVGAAGLLSDVELPTSELLARLERSGIAADRDWLDRMEQQFAGAVQQAVKEAHAAV 122 Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQ--------WKTTAQDLEQINCGDNPIIK 669 G +FNL SPKQL ++LF +L P KTKTG W D E P+I Sbjct: 123 GHEFNLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAGQTDHEL------PVI- 175 Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729 +L R+ ++++ST + L I+ R+HT ++ TGRL+S +PNLQNIP++TD Sbjct: 176 -MLRHREQARLRSTV-EGLIKTISP-GGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDE 232 Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 G+ IRR F+ + L++ADYSQIELR++AH+++ L + F + D+H VA+++FGV Sbjct: 233 GRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDDGLIEAFTSGEDLHTTVASQVFGV 292 Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848 +V P+MRR K +++ + YG+S F L+ QL I EA + +F RF G+ +Y+++ Sbjct: 293 AKSEVDPEMRRKIKAMSYGLAYGLSAFGLSGQLGIGADEARRLMDTFFERFGGVRDYLQR 352 Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908 R GY ET+ GRR + ++ S R + ER A+NAPIQG+AADI + AM+ V Sbjct: 353 VVEEARAIGYTETMLGRRRYLPDLTSDNRQRREMAERMALNAPIQGTAADIVKIAMLKVD 412 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 +L +L+++MLLQ+HDE+V E+ E +++ M A LR PL V++ V Sbjct: 413 AALTAGELSSRMLLQVHDEIVLEIAPGERERVEELVRREMAGA----FQLRAPLDVSVGV 468 Query: 969 SNNWQ 973 +W+ Sbjct: 469 GADWE 473 >gi|50365399|ref|YP_053824.1| DNA polymerase I [Mesoplasma florum L1] gi|50363955|gb|AAT75940.1| DNA polymerase I [Mesoplasma florum L1] Length = 895 Score = 266 bits (681), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 192/548 (35%), Positives = 290/548 (52%), Gaps = 42/548 (7%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGI--SMRGFE-DIMLMSYVLDSGRSS--HDIAS 507 L++FF N++F K ++IK +L I S F D M+ SYVL+ +S ++A+ Sbjct: 362 LEQFFLNDNFKKNTYDIKKTVTLLRNNNIKFSFSSFTYDAMIASYVLNPNVTSRIQNLAN 421 Query: 508 IAQKWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 I + L E+ K K + ID S ++ ++ +L LL + L Sbjct: 422 IVETELFVEEDELFYGKGVKQNKEIDTASKAKF---------IVGKLELLYSTHKPIINL 472 Query: 566 L------HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN----IYD 615 L ++YE+++ P+++V+ ME GI ID+ L + +A + LEE + D Sbjct: 473 LKENNQFNLYEKIELPLVEVLFNMEQKGILIDKVELDKQTARTLFLIEELEEKMKVILKD 532 Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675 E FN SPKQ+ ++LF ++ PS K T + + LE+I +P+I +LE R Sbjct: 533 QISENFNFGSPKQIKELLFDQIGLPSNKKQSTDK-----EALEKI-IHLHPVINLLLEHR 586 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 +L+K+ STY I +VHT ++ T TGRL+S EPN+QNI +K +L ++ R+ Sbjct: 587 KLNKLYSTYLRGFEKFI-FDDNKVHTIFNQTLTNTGRLSSSEPNIQNISVKDELQREARK 645 Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVS 794 FIS K S DYSQIELR+LA + + L +F+N D+H A +IF + E+++ Sbjct: 646 IFISNNDTKFFSFDYSQIELRVLAQLGQEDTLLNIFKNDRDVHAEAARKIFKLEENEEIT 705 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 RR AK NF IIYG+S F L+ L+I EA +I Y+ FP + Y N Sbjct: 706 SDQRRIAKVFNFGIIYGLSDFGLSNDLKISIPEAKRFIDDYYLSFPKLMTYKNSLINQAT 765 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 NGY ET RR +E+ S ++N R A+N PIQG+AADI + AM ++HK ++ Sbjct: 766 VNGYAETYANRRRIVNELASSNFMVKNFGNRIAVNMPIQGTAADILKVAMNNIHKEFREN 825 Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC--LPKI------NLRVPLKVNI 966 L + M QIHDE++FE+ E E + A +I+ M+ A L KI + V L+VN Sbjct: 826 NLKSFMTAQIHDEIIFEIFESEESLAVKIVEECMQNAFIDLSKIVQKEEQPIEVKLEVNK 885 Query: 967 KVSNNWQE 974 NNW E Sbjct: 886 SKGNNWFE 893 Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 101/296 (34%), Positives = 160/296 (54%), Gaps = 22/296 (7%) Query: 7 LFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 + LVDG+S ++RA+YA+ P+L + G+P NAI F NML L+ + + Sbjct: 4 ILLVDGNSLLFRAYYASAYAGPVL-KTTTGIPTNAIFSFANMLTSLISDRNYYDVK---- 58 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR++ +YKA R PE L+PQ +VR + I E + +EADD+I Sbjct: 59 VAFDKSKKTFRHDKLENYKAGRSATPEDLIPQFQIVREFLDSSNISWWEKENYEADDLIG 118 Query: 123 TYTYIAEKE--GFAVTIISTDKDLMQLVSPTTCLY----DTVKEEKIDIEHVIKKWGIPP 176 T + I E F V I+++DKD+ QL+S T + T E +++KW + P Sbjct: 119 TMSKIIENNFSEFEVEILTSDKDMFQLISDKTKILLPKTGTSNLELFGEAELLEKWEVAP 178 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + +V L+ L GD DN+ G+ G+G KTA LL+E+ +E I N I K +E ++ Sbjct: 179 KNVVDLKGLMGDPSDNLKGVEGVGEKTAIKLLKEFQTIEGIYENIDSI-SGKLQEKLING 237 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVAT 290 ++A L +++ + +V I E+L+ E + N LI+FL+ E L+ R++T Sbjct: 238 KDSAILCKEIATINCEVEI----ENLVFEPINLNLNGLINFLEKYEMNSLVKRLST 289 >gi|309808033|ref|ZP_07701952.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a] gi|308168716|gb|EFO70815.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 01V1-a] Length = 302 Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 139/307 (45%), Positives = 202/307 (65%), Gaps = 11/307 (3%) Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731 +++RQ+SKI+STY + L ++I + ++HT + T TGRL+S+EPNLQNIP+K + G+ Sbjct: 1 MDYRQISKIQSTYINGLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGK 59 Query: 732 KIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 +IR+AF+ P K+ L S DYSQ+ELR+LAH++ + + F+ DIH A +IFG+ Sbjct: 60 QIRKAFV--PCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDIHAHTAMKIFGL 117 Query: 789 -NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 N+++V+P MRRHAK +NF I+YGIS + LA L I R EA ++I YF ++P I +Y++ Sbjct: 118 SNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYFEQYPQIKDYMK 177 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 R+ GY ETI RR +I++ +IR+ ER AIN+PIQGSAADI + AMI + Sbjct: 178 AAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSAADIIKIAMIKM 237 Query: 908 HKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 LE KL TKM+LQIHDEL+F+VP EE+ ++ M++A L VPL + Sbjct: 238 QSELERRKLKTKMILQIHDELLFDVPSEELDLIRTLVPKIMQQAA----QLDVPLIADAN 293 Query: 968 VSNNWQE 974 +NW E Sbjct: 294 WGHNWYE 300 >gi|308235787|ref|ZP_07666524.1| DNA polymerase I [Gardnerella vaginalis ATCC 14018] gi|311114446|ref|YP_003985667.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019] gi|310945940|gb|ADP38644.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019] Length = 1033 Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 146/407 (35%), Positives = 235/407 (57%), Gaps = 14/407 (3%) Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P+ V+ ME G +D L + + ++ D++ + NL SPKQL +LF Sbjct: 629 PVSRVLRGMEDAGAAVDMSRLVSMRDNFAAEAQFAQKMALDVANKPINLQSPKQLQQLLF 688 Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP------IIKNILEWRQLSKIKSTYADSL 688 + +TK+G + T A+ L+++ +P + +L+ R+ +K+K SL Sbjct: 689 EDMGLKPTRRTKSGSYTTNAEALQELYAKIDPDEKASQFLGALLKHRETNKLKQI-VQSL 747 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK--KLI 746 + R+HT + TGRL+S +PNLQNIP + +G++IR AFI P + +L+ Sbjct: 748 IDSARYEDGRIHTTFEQTIAATGRLSSSDPNLQNIPNRNVVGREIRAAFI-PGNQYDQLM 806 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 S DYSQ+ELRI+AH + L + F++ +D H+ VA+ ++ + +E+VSP R H K +++ Sbjct: 807 SCDYSQVELRIMAHASADETLIKAFKSGVDFHKFVASLVYKIPVEQVSPDQRSHVKAMSY 866 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 + YG+S + LA QL I + A ++YF F G+H+Y+E + R+ GY +T+FGRR Sbjct: 867 GLAYGLSTYGLAKQLSISPAAAEVLKEKYFDTFGGVHDYLESLVDKARKLGYTQTMFGRR 926 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 ++ ++NS + R ERAA+NAPIQGSAADI + AMI V K L + K+ ++++LQIHD Sbjct: 927 RYFPKLNSTNRASRESAERAALNAPIQGSAADIMKLAMIQVDKDLREAKVKSRVILQIHD 986 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 ELV E+ E I+ ++ME + L VPL V+ + +WQ Sbjct: 987 ELVLEIAHGEADIVENIVKNAMEHT----VELDVPLNVSTGLGADWQ 1029 Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/284 (33%), Positives = 152/284 (53%), Gaps = 18/284 (6%) Query: 7 LFLVDGSSFIYRAFYATPL--LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 L +VDG S +RAFYA S K G NAI GF ML ++++ + + +A V Sbjct: 21 LLVVDGHSLAFRAFYAISADNFSTKS-GFATNAIWGFSTMLSQVIEKEKPDKLA----VA 75 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFRN++ P YK R PE LL QLP+++ A G+ I QG+E DDIIAT Sbjct: 76 FDVKGGTFRNKLLPQYKGTREAAPEELLAQLPVIQELLNALGVKYITKQGYEGDDIIATL 135 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 + K + ++S D+D QL+ P D +++D + +I+K+ + P+ Sbjct: 136 ATMGAKAKYKTLVLSGDRDAFQLIDEYINVLYPGRHFKDL---KQMDTDAIIEKYNVTPK 192 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 + L AL G++ DNIPG+PG+G AA + ++G LE I+ +A ++ KK E++ E Sbjct: 193 QYSDLAALRGETSDNIPGVPGVGDGYAAKWINQFGGLEGIIEHADQVTGKK-GESLRESI 251 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 + RL++K+ L D+ + + + L + + + + LEF Sbjct: 252 DQIRLNKKVNTLVKDLDLGVGINDLEFGNVDAASVGELFERLEF 295 >gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309] gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309] Length = 908 Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 175/518 (33%), Positives = 272/518 (52%), Gaps = 18/518 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 H+ K + L G ++ G E D ML +Y+ + SH + + + L +E + Sbjct: 394 HDAKGARHALSSRGWTLGGVEFDTMLAAYLAHPDQRSHKLEDVLSRVLGVVIEEGEGDSE 453 Query: 526 SSIPIDKISD--SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 + + + S Q A + + + L LR +L + ++ P+ ++ QM Sbjct: 454 ALFDLGDMGAGPSAAQVRAGKLAAYLHPLASTLRSRLEESSEAALLTDMEMPLSVLLGQM 513 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E GI D +L +S E+ K + + E + +G + NLSSPKQL ++LF P Sbjct: 514 EDIGIAADTSVLNGLSDELGKAVDAAREGAWAAAGREVNLSSPKQLQELLFDHFGLPKTK 573 Query: 644 KTKTGQWKTT-------AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 KTKTG A+ ++ G + + +L R K+K DSL + Sbjct: 574 KTKTGYTTNADALADLHAKTSDEGGAGHD-FLGFLLTHRDRIKLKQ-MVDSLSATVAS-D 630 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIEL 755 R+HT +S + TGRLAS +PNLQNIP ++ G +IR AF++ + L+SADYSQIE+ Sbjct: 631 GRIHTTFSQVAAATGRLASSDPNLQNIPARSADGMRIRGAFVAGEGFESLMSADYSQIEM 690 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 R++AH++ L + F + D+HR +A+ +FG + +VS + R K ++ + YG+S + Sbjct: 691 RLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLAYGLSSY 750 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA QL IP EAA RYF RF + +Y+E R +GY +T+FGRR + ++ S Sbjct: 751 GLAAQLGIPVPEAAALRDRYFERFGKVRDYLEGLVAQARADGYTQTMFGRRRYLPDLRSS 810 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 R + ERAA+NAPIQGSAADI + AMI+V +L + L +++L+QIHDEL+ EV Sbjct: 811 NRQRREMAERAALNAPIQGSAADIVKIAMINVVDALSEAGLKSRLLVQIHDELLVEVAPG 870 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E I+ M + L VPL V + V +WQ Sbjct: 871 EAAAVEAIVRDRMAT----PVELSVPLDVAVGVGRSWQ 904 Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 99/287 (34%), Positives = 153/287 (53%), Gaps = 10/287 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 + ++DG S +RAFYA P S G NA+ GF +ML +LL+ + +H AV F Sbjct: 12 VLIIDGHSMAFRAFYALPPDSFVTATGQHTNAVYGFVSMLTRLLETEQP----THVAVAF 67 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D +FR E YP+YK R PE Q+ L+R A GI ++ +GFEADDI+AT Sbjct: 68 DVSRHSFRTEEYPEYKGTRDATPEEFKGQVELIREVLDAMGIVSLSREGFEADDILATLA 127 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVC 181 Y A +G V ++S D+D Q V+ T LY ++ + V +K+G+PP + Sbjct: 128 YRAGNDGATVLVVSGDRDSFQTVTDNVTVLYPGTGPGDLRRMTPQAVEEKYGVPPHRYPE 187 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 + A+ G++ DN+PG+PG+G KTAA + +Y L+N+L A I KR + E+ + Sbjct: 188 IAAIVGETSDNLPGVPGVGPKTAAQWINKYDGLDNLLARADEIG-GKRGAALREHMDDVV 246 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +R+L L TD+ + + L + + +LEF +L +V Sbjct: 247 RNRRLNRLLTDMDLEVSPSDLARRPTDVAAIDRLFDSLEFGRLRQKV 293 >gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] Length = 889 Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 176/518 (33%), Positives = 275/518 (53%), Gaps = 18/518 (3%) Query: 467 HNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 H+ K + L G ++ G E D ML +Y+ + SH + + + L +E + Sbjct: 375 HDAKGARHALSSRGWTLGGVEFDTMLAAYLAHPDQRSHKLEDVLSRVLGVVIEEEEGDSE 434 Query: 526 SSIPIDKISD--SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQM 583 + + + S Q A + + + L LR +L + ++ P+ ++ QM Sbjct: 435 ALFDLGDMGAGPSAAQVRAGKLAAHLHPLASTLRSRLEESSEAALLTDMEMPLSVLLGQM 494 Query: 584 EITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGA 643 E GI D +L +S E+ K + + E + +G + NLSSPKQL ++LF P Sbjct: 495 EDIGIAADTSVLDGLSDELGKAVDAAREGAWAAAGREVNLSSPKQLQELLFDHFGLPKTK 554 Query: 644 KTKTGQWKTTAQDLEQINC-------GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRT 696 KTKT + T A+ L ++ + + +L R K+K DSL + Sbjct: 555 KTKT-GYTTNAEALADLHAKTSDEGGAGHDFLGFLLTHRDRIKLKQ-MVDSLSATVAS-D 611 Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIEL 755 R+HT +S + TGRLAS +PNLQNIP ++ G +IR AF++ + L+SADYSQIE+ Sbjct: 612 GRIHTTFSQVAAATGRLASSDPNLQNIPARSADGMRIRGAFVAGEGFESLMSADYSQIEM 671 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPF 815 R++AH++ L + F + D+HR +A+ +FG + +VS + R K ++ + YG+S + Sbjct: 672 RLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLAYGLSSY 731 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 LA QL IP EAA RYF RF + +Y+E R +GY +T+FGRR + ++ S Sbjct: 732 GLAAQLGIPVPEAAALRDRYFERFGKVRDYLEGLVAQARADGYTQTMFGRRRYLPDLRSS 791 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 R + ERAA+NAPIQGSAADI + AMI+V +L + L +++L+QIHDEL+ EV Sbjct: 792 NRQRREMAERAALNAPIQGSAADIVKIAMINVVDALSEAGLKSRLLVQIHDELLVEVAPG 851 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E I+ +K P + L VPL V + V +WQ Sbjct: 852 EAAAVEAIV---RDKMATP-VELSVPLDVAVGVGRSWQ 885 Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 96/277 (34%), Positives = 147/277 (53%), Gaps = 10/277 (3%) Query: 17 YRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNE 75 +RAFYA P S G NA+ GF +ML +LL+ + +H AV FD +FR E Sbjct: 3 FRAFYALPPDSFVTATGQHTNAVYGFVSMLTRLLETEQP----THVAVAFDVSRHSFRTE 58 Query: 76 IYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAV 135 YP+YK R PE Q+ L+R A GI ++ +GFEADDI+AT Y A +G V Sbjct: 59 EYPEYKGTRDATPEEFKGQVELIREVLDAMGIVSLSREGFEADDILATLAYRAGNDGATV 118 Query: 136 TIISTDKDLMQLVSP-TTCLYDTVKE---EKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191 ++S D+D Q V+ T LY ++ + V +K+G+PP + + A+ G++ D Sbjct: 119 LVVSGDRDSFQTVTDNVTVLYPGTGPGDLRRMTPQAVEEKYGVPPHRYPEIAAIVGETSD 178 Query: 192 NIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRT 251 N+PG+PG+G KTAA + +Y L+N+L A I KR + E+ + +R+L L T Sbjct: 179 NLPGVPGVGPKTAAQWINKYDGLDNLLARADEIG-GKRGAALREHMDDVVRNRRLNRLLT 237 Query: 252 DVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 D+ + + L + + +LEF +L +V Sbjct: 238 DMDLEVSPSDLARRPTDVAAIDRLFDSLEFGRLRQKV 274 >gi|260889284|ref|ZP_05900547.1| DNA polymerase I [Leptotrichia hofstadii F0254] gi|260860695|gb|EEX75195.1| DNA polymerase I [Leptotrichia hofstadii F0254] Length = 370 Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 150/371 (40%), Positives = 227/371 (61%), Gaps = 13/371 (3%) Query: 609 LEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG----- 663 L+ +IY L+ +FN+ SP+QLG++LF KL+ PSG KTKTG + T + LE I Sbjct: 2 LQSDIYKLADGEFNIDSPQQLGEVLFEKLQIPSGKKTKTG-YSTNVEVLEMIANNRELTE 60 Query: 664 DNPII-KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 D +I K +LE+R K+ STY + +P +K +R+HT ++ T TGRL+S PNLQN Sbjct: 61 DKRMIGKKLLEYRAYKKLLSTYIEPIPKLADKE-ERIHTTFNQNGTSTGRLSSANPNLQN 119 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IP++TD G +IR F++ LIS DYSQIELR+LA ++K L + ++++ D+H + A Sbjct: 120 IPVRTDDGIRIRTGFVAKEGHSLISFDYSQIELRVLAELSKDRHLVKAYQDNQDLHDLTA 179 Query: 783 AEIFGVNIE-KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 +IF E ++S R AK INFSI+YG +PF L+ +L I EA+ YI YF +P Sbjct: 180 RKIFFKTEEDEISRHERSIAKVINFSILYGKTPFGLSKELGITVQEASQYITTYFEEYPR 239 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 + ++++ + +G+VET +G R + IN+ +I+ R A+N +QG+AA+I + Sbjct: 240 VRKFLDIVTETAKLHGFVETFYGTRRYISGINATNKNIQAQAVRMAVNTVVQGTAANIIK 299 Query: 902 RAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVP 961 + MI +H+ ++ + KMLLQ+HDEL+FEV +E + I ME K +VP Sbjct: 300 KVMIELHEEFKNDE-NIKMLLQVHDELIFEVRDEFAKEYMKKIEKIMENTVKFK---KVP 355 Query: 962 LKVNIKVSNNW 972 LK N V+ NW Sbjct: 356 LKANGSVAKNW 366 >gi|83319510|ref|YP_424604.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283396|gb|ABC01328.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 911 Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 179/572 (31%), Positives = 310/572 (54%), Gaps = 42/572 (7%) Query: 426 TIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--HRYGISM 483 ++D Q S ++T S ++F N + K ++IK +L H+Y + Sbjct: 353 NFYLDFKNKAQQLSFFEDTTLSSTDSLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLA 412 Query: 484 RGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542 F+ D M+ Y L++ S D+++ + +++ + ID+I V+++ Sbjct: 413 SNFDFDFMVACYSLNANVVS-DLSN---------QIKLVDNLIELETIDEIFGKGVKKNP 462 Query: 543 -----IENSNVILQLWLLLR-PKLIVEKL-----LHVYERLDKPMIDVVSQMEITGIQID 591 I++ + + +LL + ++E+L +Y ++D P+I+V+ +E+ GI ID Sbjct: 463 DIDLDIKSKYISKKAYLLKKYSDQLIEQLKQTNTYDLYLKIDHPLIEVLYDIEVQGILID 522 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEK----FNLSSPKQLGDILFTKLKFPSGAKTKT 647 ++ LK + +I K + +E + L E+ FN SSPKQ+ ++LF KLK P+ K Sbjct: 523 KEQLKLQTQQILKKINHIEWQMKILVAEEIDNNFNFSSPKQIQELLFDKLKLPNLEKG-- 580 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 TT++++ + +PII +LE R+ +K+ +TY I +VHT ++ Sbjct: 581 ----TTSKEVLEKLITYHPIINLLLEHRKYTKLYTTYLKGFEKFI-FDDNKVHTIFNHTL 635 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 T TGRL+S PN+QNI I+ + +++R+ FI+ K +S DYSQIELR+LA ++K T L Sbjct: 636 TNTGRLSSSYPNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNL 695 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 F + DIH A IF ++ ++++ + RR AK NF I+YG++ F LA+ L + ++ Sbjct: 696 INAFNQNADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLASDLNMNVNQ 755 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A IK Y+ FP + ++ EK GY+ T+ RR + +E+NS +IR +R A Sbjct: 756 AKQMIKDYYSAFPSLLDFKEKQVEIATSKGYITTLSNRRRYINELNSTNHNIRQFGKRIA 815 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +N PIQG+A+DI + AMIS++K L++ L K++ QIHDE++ EV + ++ +I+V Sbjct: 816 VNTPIQGTASDILKVAMISIYKKLKEQNLDAKIICQIHDEIILEVDDNQLEQTKKIVVSE 875 Query: 948 MEKA---CLPKINLR----VPLKVNIKVSNNW 972 +E A +N++ V LKV V W Sbjct: 876 LENALEKLFLDLNIKDQVVVKLKVGESVGKTW 907 Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 103/302 (34%), Positives = 152/302 (50%), Gaps = 21/302 (6%) Query: 7 LFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + +VDG+S I+RAFYAT L + G+ NA+ F NML ++ + H Sbjct: 5 ILVVDGNSLIFRAFYATAYSPNTSLLKTKSGVLTNAVYSFINMLLSVIH---QRGPYDHI 61 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 + FD TFR+++ DYKANR K P L+ Q +VR I E + EADDI Sbjct: 62 LIAFDKGKKTFRHDLLSDYKANRIKTPNELVEQFSIVREFLTKANIQWFEQENIEADDIA 121 Query: 122 ATYTYIAEKE--GFAVTIISTDKDLMQLVS-PTTCL--YDTVKE-EKIDIEHVIKKWGIP 175 + AEK+ I+S+DKD+ QL++ CL V E E++D + +KW I Sbjct: 122 GSICKYAEKQFDNLQAEILSSDKDMYQLITNKVICLNPVQGVNELEEVDTNKLFEKWQIL 181 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P ++ +A+ GDS DN+ G+ GIG K A L+Q+Y NLENI N +IK + + + + Sbjct: 182 PNQVPDYKAIVGDSSDNLKGVNGIGQKGAIKLIQQYQNLENIYNNLEQIKGAIKTK-LEQ 240 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVATTYD 293 + A L + L ++TDV LE+ + D N + FL E L R + Sbjct: 241 DKKMAFLCKDLATIKTDV----TLENFSFKKLDFNVDNIYEFLNKYEMYSLKKRFTNILN 296 Query: 294 CD 295 D Sbjct: 297 LD 298 >gi|295111897|emb|CBL28647.1| DNA polymerase I [Synergistetes bacterium SGP1] Length = 850 Score = 263 bits (673), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 149/420 (35%), Positives = 241/420 (57%), Gaps = 21/420 (5%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFN 622 + L V E +D P+I V+ +ME G+++D + E++ + ++E + D++G N Sbjct: 443 QGLRDVMEGIDLPLIPVLLRMERWGVRLDPSRFAALQEELAARIRAIEAQVEDMAGTAVN 502 Query: 623 LSSPKQLGDILFTKLKF-PSG-AKTKTGQWKTTAQDLE---QINCGDNPIIKNILEWRQL 677 L+SPKQ+ D+LF +L F P G K KTG + T A LE ++ G+ P + +LE R+L Sbjct: 503 LNSPKQVADLLFVQLGFAPEGKTKGKTG-FSTGAAVLEHLARLPGGEVPAL--LLEHREL 559 Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 SK++S + L + +HT + A T TGRL+S +PNLQNIP ++I++ Sbjct: 560 SKMQSGFVVPLQKAAEEGEGVIHTTFEPALTGTGRLSSRDPNLQNIPAFGQWAERIKQGL 619 Query: 738 ISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794 + P ++ ++ADYSQIELR+LAH+++ L + F N DIHR A+ +F + E V+ Sbjct: 620 V--PVREGNVFVAADYSQIELRVLAHMSREPRLVEAFRNGRDIHRETASWVFSMAPEFVT 677 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 P++RR AK INF ++YG+S F LA +L +PR EA+ +KRYF PG+ +++ Sbjct: 678 PELRRVAKMINFGLLYGMSAFGLAERLDMPRGEASMIVKRYFEALPGVQSFLKDIVKEAH 737 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 G+ T+ GR DE+ + R +R +N PIQG+AADI R+AM+ ++ H Sbjct: 738 AAGFARTLAGRIRPVDEVT---AQGRGGLDRVLVNTPIQGTAADIARKAMVDFDRAFR-H 793 Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ LQ+HD LV E P ++ + HS+ + + L +PL+V +K ++ E Sbjct: 794 DGEVRLFLQVHDSLVCECP----AARAEEVGHSLREIMMNAATLSLPLEVQLKTGSSLAE 849 Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 89/265 (33%), Positives = 135/265 (50%), Gaps = 16/265 (6%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKH----DGLPVNAIAGFCNMLWKLLQNSRKESI 57 + + L +VDG YRAFYA + R+ DG P + GF NML+ + + ++ Sbjct: 15 KGRDRLLIVDGHGLAYRAFYA---MERQELSAPDGTPTGVLTGFMNMLFFAEERVKPRAV 71 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 A V FD P TFR+E+ P YKA R PE Q+PL++ + G P + G EA Sbjct: 72 A----VAFDAPGPTFRHEMLPQYKATRKPSPEEFKAQVPLLQELLRLMGYPLLIQSGVEA 127 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE-----EKIDIEHVIKKW 172 DD++A+ A ++G+ ++S+DKDLMQ++ P + +K E + Sbjct: 128 DDVMASLALRATEKGWQAVLLSSDKDLMQVLGPGVLIMRPLKSGVSSAEIYSAADFEAEK 187 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 G P + AL GD DN+PG+ GIG KTA L+ + LE + S ++ R++ Sbjct: 188 GFSPSSVPDYLALLGDKADNVPGVAGIGEKTAGELISRWTTLEAVFDGLSEVRPAVRKKL 247 Query: 233 ILEYAETARLSRKLVMLRTDVPITI 257 E A+ SR L+ LR DVP+ + Sbjct: 248 EASGLEAAQRSRDLIRLRLDVPLDL 272 >gi|23336564|ref|ZP_00121775.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bifidobacterium longum DJO10A] Length = 682 Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 168/545 (30%), Positives = 289/545 (53%), Gaps = 28/545 (5%) Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG-----ISMRGFEDIMLMSYVLDSG 499 +T + + L +F ++EH I H K +LH G + + F D L Y+ Sbjct: 146 ITDTLRAQLARFLKSEHSRTIVHGYKE---LLHLLGAVDLDMDLPMF-DTKLAGYLAQPD 201 Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE----HAIENSNVILQLWLL 555 + + A+ +L E + + ++ D D QV+E H + + +I L + Sbjct: 202 FHADSLKQAAEHFLDIHFTETEQPSQGTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVT 258 Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615 L P + + + ++ P+ V+ ME TG ++D L + + + +E ++ Sbjct: 259 LGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWE 318 Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NCGDNPIIK 669 +G + NL SPKQL +LF + +TK+G + T A L+ + N N + Sbjct: 319 YAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLG 378 Query: 670 NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL 729 +L R+++K+K +L + N +R+HT + TGRL+S++PNLQNIP + Sbjct: 379 ALLRHREINKLKQI-VQTLIDATNTSDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAA 437 Query: 730 GQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 G++IR F+ + L+S DYSQ+ELRI+A ++ L + F + D H+ VA+ ++ + Sbjct: 438 GREIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKL 497 Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEK 848 +++++ R H K +++ + YG+S + LA QL+I EA RYF F +H+Y+E Sbjct: 498 PVDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLES 557 Query: 849 TKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVH 908 R+ GY ETIFGRR ++ ++S R ERAA+NAPIQGSAADI + AMI Sbjct: 558 LVANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAE 617 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 ++L + + ++++LQIHDELV E+ E ++++ ++ME A ++L VPL V+ + Sbjct: 618 QTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA----VDLAVPLDVSCGI 673 Query: 969 SNNWQ 973 ++WQ Sbjct: 674 GSDWQ 678 >gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 955 Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 166/544 (30%), Positives = 286/544 (52%), Gaps = 26/544 (4%) Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE----DIMLMSYVLDSGR 500 +T + + +F ++EH I H K +LH G + D L Y+ Sbjct: 419 ITDTLRAQFARFLKSEHSRTIVHGYKE---LLHLLGAVDLDMDLPMFDTKLAGYLTQPDF 475 Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE----HAIENSNVILQLWLLL 556 + + A+ +L E + + ++ D D QV+E H + + +I L + L Sbjct: 476 HADSLKQAAEHFLDIHFTETEQPSQGTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVTL 532 Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 P + + + ++ P+ V+ ME TG ++D L + + + +E ++ Sbjct: 533 GPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEY 592 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NCGDNPIIKN 670 +G + NL SPKQL +LF + +TK+G + T A L+ + N N + Sbjct: 593 AGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGA 652 Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730 +L R+++K+K +L + N +R+HT + TGRL+S++PNLQNIP + G Sbjct: 653 LLRHREINKLKQI-VQTLIDATNTSDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAG 711 Query: 731 QKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789 ++IR F+ + L+S DYSQ+ELRI+A ++ L + F + D H+ VA+ ++ + Sbjct: 712 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLP 771 Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849 +++++ R H K +++ + YG+S + LA QL+I EA RYF F +H+Y+E Sbjct: 772 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 831 Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 R+ GY ETIFGRR ++ ++S R ERAA+NAPIQGSAADI + AMI + Sbjct: 832 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 891 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 +L + + ++++LQIHDELV E+ E ++++ ++ME A ++L VPL V+ + Sbjct: 892 TLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA----VDLAVPLDVSCGIG 947 Query: 970 NNWQ 973 ++WQ Sbjct: 948 SDWQ 951 Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 103/298 (34%), Positives = 159/298 (53%), Gaps = 15/298 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P+ + G NA+ GF ML +++ + + H V F Sbjct: 14 LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 69 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNE+ P YK R PE LL QLPL++ A G+ IE GFE DD+IAT Sbjct: 70 DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKSGFEGDDVIATLA 129 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + +K G+ ++S D+D QLV T LY D++H ++ K+ + P + Sbjct: 130 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIVDKYKVTPAQY 187 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DNIPG+PG+G AA + ++G+L+ I +A I KK E++ + Sbjct: 188 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANIDQ 246 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDA 296 +L+RK+ L DV + + +E L + ++ + K LEF + +RV T++ A Sbjct: 247 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTRSRVLKTFNTGA 304 >gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 950 Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 166/544 (30%), Positives = 286/544 (52%), Gaps = 26/544 (4%) Query: 445 LTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE----DIMLMSYVLDSGR 500 +T + + +F ++EH I H K +LH G + D L Y+ Sbjct: 414 ITDTLRAQFARFLKSEHSRTIVHGYKE---LLHLLGAVDLDMDLPMFDTKLAGYLTQPDF 470 Query: 501 SSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE----HAIENSNVILQLWLLL 556 + + A+ +L E + + ++ D D QV+E H + + +I L + L Sbjct: 471 HADSLKQAAEHFLDIHFTETEQPSQGTLDFD---DDQVEEDPNEHRLRDLAIIRSLAVTL 527 Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 P + + + ++ P+ V+ ME TG ++D L + + + +E ++ Sbjct: 528 GPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEY 587 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI------NCGDNPIIKN 670 +G + NL SPKQL +LF + +TK+G + T A L+ + N N + Sbjct: 588 AGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGA 647 Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730 +L R+++K+K +L + N +R+HT + TGRL+S++PNLQNIP + G Sbjct: 648 LLRHREINKLKQI-VQTLIDATNTSDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAG 706 Query: 731 QKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN 789 ++IR F+ + L+S DYSQ+ELRI+A ++ L + F + D H+ VA+ ++ + Sbjct: 707 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLP 766 Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849 +++++ R H K +++ + YG+S + LA QL+I EA RYF F +H+Y+E Sbjct: 767 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 826 Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 R+ GY ETIFGRR ++ ++S R ERAA+NAPIQGSAADI + AMI + Sbjct: 827 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 886 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 +L + + ++++LQIHDELV E+ E ++++ ++ME A ++L VPL V+ + Sbjct: 887 TLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHA----VDLAVPLDVSCGIG 942 Query: 970 NNWQ 973 ++WQ Sbjct: 943 SDWQ 946 Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 103/298 (34%), Positives = 159/298 (53%), Gaps = 15/298 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L +VDG S +RAF+A P+ + G NA+ GF ML +++ + + H V F Sbjct: 9 LLVVDGHSLAFRAFFALPVDNFSTSSGQATNAVWGFATMLAQVIDAEKPD----HLGVAF 64 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFRNE+ P YK R PE LL QLPL++ A G+ IE GFE DD+IAT Sbjct: 65 DVKGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKSGFEGDDVIATLA 124 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKIDIEH-----VIKKWGIPPEKM 179 + +K G+ ++S D+D QLV T LY D++H ++ K+ + P + Sbjct: 125 TMGDKAGYHTLVLSGDRDAFQLVDDNVTVLYP--GHHFKDLKHMTPQSIVDKYKVTPAQY 182 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DNIPG+PG+G AA + ++G+L+ I +A I KK E++ + Sbjct: 183 PDLAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIGGKK-GESLRANIDQ 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDA 296 +L+RK+ L DV + + +E L + ++ + K LEF + +RV T++ A Sbjct: 242 VKLNRKVNALVRDVDLGVDIEDLTFGTVDVAQIDALFKELEFGPRTRSRVLKTFNTGA 299 >gi|294102246|ref|YP_003554104.1| DNA polymerase I [Aminobacterium colombiense DSM 12261] gi|293617226|gb|ADE57380.1| DNA polymerase I [Aminobacterium colombiense DSM 12261] Length = 854 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 162/443 (36%), Positives = 247/443 (55%), Gaps = 25/443 (5%) Query: 535 DSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDK-------PMIDVVSQMEITG 587 +S E + + QLW R K + + Y+ LDK P+I V+ +ME G Sbjct: 413 ESWAAESIADPVEIAGQLW---RVKNDLSSNIAQYQGLDKLMRDVEIPLIPVLWRMETWG 469 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 I ++++ + +++ ++ +E+ I + GE+ NL+SPKQ+ +LF KL P +TKT Sbjct: 470 IGLNRESFNGLDSDLEIRIVEIEDTIAEKGGERINLNSPKQVAWLLFEKLNMPPIKETKT 529 Query: 648 GQWK--TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 G T ++L ++ + + + ILE R+LSK++S + L + ++ T +H + Sbjct: 530 GYSTDVTVLEELVKMGLPEKEVPELILEHRELSKMRSGFVHPLVSAADENTDLIHGTFES 589 Query: 706 ASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIA 762 ST TGRL+S +PNLQN+P +++ + P K ++ADYSQ+ELR+LAH+ Sbjct: 590 TSTGTGRLSSRDPNLQNLPAFGQWSTRLKEGLV--PHKDGNIFVAADYSQVELRVLAHLC 647 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 L + FE DIH A+ IF VN + V+P++RR AK +NF ++YG+S F LA++L Sbjct: 648 DEKRLKEAFEARRDIHTETASWIFNVNPQMVTPELRRFAKVVNFGLLYGMSSFGLASRLG 707 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN-SPKSSIRN 881 I + EA D I RYF P + +YIEK+ R+ GY T FGR DE++ +P+ R Sbjct: 708 IGQQEAGDIINRYFRALPKVRDYIEKSYQDARKRGYAVTDFGRIRPLDEVSVNPRD--RG 765 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 +R A+N PIQG+AADI R AMI +K E + ++LQIHD LV E EE Sbjct: 766 ALKRIAVNTPIQGTAADIARMAMIKFYKHFEKRQ-NVHLVLQIHDSLVCECAAEEKEAVV 824 Query: 942 QIIVHSMEKACLPKINLRVPLKV 964 + + ME A L VPLKV Sbjct: 825 KDLTDIMESAA----TLSVPLKV 843 Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 107/290 (36%), Positives = 164/290 (56%), Gaps = 12/290 (4%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 K+ + LVDG + +RAFYA P L+ DG P NAI GF NM++K + + + A Sbjct: 5 KDKTVLLVDGHALAFRAFYALPELTAP-DGTPTNAILGFINMMFKTIDDCHPDMTA---- 59 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V+FD P TFR+EIYP+YK R PE Q+PL++ +A GI + +G EADD+IA Sbjct: 60 VVFDAPGATFRHEIYPEYKMGRRPTPEEYKVQVPLLQQVVRAMGIKVVVKEGVEADDVIA 119 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----VIKKWGIPPEK 178 + A + G V +++DKD++Q++ P + +K E+ ++WG PP Sbjct: 120 SAVCGAARLGVKVIALTSDKDILQVLQPGVRIIRPIKGVSTFTEYNEASFEEEWGFPPTV 179 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 M AL GD++DNIPG+PG+G KTA LL +Y +LE+I + +K +++ +E E Sbjct: 180 MPDYLALLGDAVDNIPGVPGVGEKTAKKLLSQYVSLEDIYDHLDELKPGLQKK-FIEAKE 238 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 TA SR+L+ L+ D+P+T+ E + N + L K++ RV Sbjct: 239 TAFKSRELIRLKCDLPLTV--EEFTQTEVNFESFEELCRRLGLHKILERV 286 >gi|42561209|ref|NP_975660.1| DNA polymerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492707|emb|CAE77302.1| DNA POLYMERASE I [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321190|gb|ADK69833.1| DNA-directed DNA polymerase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 911 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 191/625 (30%), Positives = 319/625 (51%), Gaps = 50/625 (8%) Query: 372 VNTKDIQQWVQKLETIGSASFKIITDTMDAFH-SKPIAIAISTLDQKDDTSFKVETIFID 430 ++ K I W + E S ++ + + +H K I I IS ++D Sbjct: 309 LDVKIINSWSKDYE--DSINYLYVESLEEDYHKDKIIGIGISN---------NKGNFYLD 357 Query: 431 LSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVL--HRYGISMRGFE- 487 Q S ++T S ++F N + K ++IK +L H+Y + F+ Sbjct: 358 FKNKAQQLSFFEDTTLSSTDSLFEEFLNNSNLKKYTYDIKKTTYLLKNHKYNVLASNFDF 417 Query: 488 DIMLMSYVLDSG---RSSHDIASIAQKWLSYTRKEIL-KSRKSSIPIDKISDSQVQEHAI 543 D M+ Y L++ S+ I + T EI K K + ID ++ I Sbjct: 418 DFMVACYSLNANVISDLSNQIKLVDNMIELETIDEIFGKGVKKNPDID----LDIKSKYI 473 Query: 544 ENSNVILQLWLLLRPKLIVEKL-----LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +L+ + ++E+L +Y ++D P+I+V+ +E+ GI ID++ LK Sbjct: 474 SKKAYLLKKY----SDQLIEQLKQTNTYDLYLKIDHPLIEVLYDIEVQGILIDKEQLKLQ 529 Query: 599 SAEISKNLLSLEENIYDLSGEK----FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 + +I K + +E + L E+ FN SSPKQ+ ++LF KLK P+ K TT+ Sbjct: 530 TQQILKKINHIEGQMKILVAEEIDNNFNFSSPKQIQELLFDKLKLPNLEKG------TTS 583 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 +++ + +PII +LE R+ +K+ TY I +VHT ++ T TGRL+ Sbjct: 584 KEVLEKLITFHPIINLLLEHRKYTKLYITYLKGFEKFI-FDDNKVHTIFNHTLTNTGRLS 642 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S PN+QNI I+ + +++R+ FI+ K +S DYSQIELR+LA ++K + L + F Sbjct: 643 SSYPNIQNISIRDNEQKEVRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQD 702 Query: 775 LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKR 834 DIH A IF ++ ++++ + RR AK NF I+YG++ F LA L + ++A IK Sbjct: 703 ADIHLQAAKLIFNLSDDQITSEQRRIAKVFNFGILYGLTDFGLANDLNMNVNQAKQMIKD 762 Query: 835 YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQG 894 Y+ FP + ++ EK GY+ T+ RR + DE+NS +IR +R A+N PIQG Sbjct: 763 YYSAFPSLLDFKEKQVEIATNQGYITTLSNRRRYIDELNSTNHNIRQFGKRIAVNTPIQG 822 Query: 895 SAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA--- 951 +A+DI + AMIS++K L++ L +++ QIHDE++ EV + ++ +I+V +E A Sbjct: 823 TASDILKVAMISIYKKLKEQNLDARIVCQIHDEIILEVNDNQLEQTKKIVVSELENALEK 882 Query: 952 CLPKINLR----VPLKVNIKVSNNW 972 +N++ V LKV V W Sbjct: 883 LFLDLNIKEQVVVKLKVGESVGKTW 907 Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 100/302 (33%), Positives = 152/302 (50%), Gaps = 21/302 (6%) Query: 7 LFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + +VDG+S I+RAFYAT L + G+ NA+ F NML ++ + H Sbjct: 5 ILVVDGNSLIFRAFYATAYSPNTSLLKTKSGVLTNAVYSFINMLLSVIH---QRGPYDHI 61 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 + FD TFR+++ DYKANR K P L+ Q +VR I E + EADDI+ Sbjct: 62 LIAFDKSKKTFRHDLLSDYKANRIKTPNELVEQFSIVREFLTKANIQWFEQENIEADDIV 121 Query: 122 ATYTYIAEKE--GFAVTIISTDKDLMQLVS-PTTCL--YDTVKE-EKIDIEHVIKKWGIP 175 + AEK+ I+S+DKD+ QL++ CL V E E++D + +KW I Sbjct: 122 GSICKYAEKQFDDLQAEILSSDKDMYQLITNKVICLNPVQGVNELEEVDTNKLFEKWQIL 181 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P ++ +A+ GDS DN+ G+ GIG K A L+Q+Y +LENI + ++K + + + + Sbjct: 182 PNQVPDYKAIVGDSSDNLKGVNGIGQKGAIKLIQQYESLENIYNSLEQLKGAIKTK-LEQ 240 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVATTYD 293 + A L + L ++TDV LE+ D N + FL E L R + Sbjct: 241 DKKMAFLCKDLATIKTDV----VLENFSFNKLDFNVDNIYEFLNKYEMYSLKKRFTNILN 296 Query: 294 CD 295 D Sbjct: 297 LD 298 >gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] Length = 905 Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 150/404 (37%), Positives = 222/404 (54%), Gaps = 9/404 (2%) Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILF 634 P+ V++++E TGI D L + + + YD G + NL SPKQL ++LF Sbjct: 508 PLSAVLARVEATGIATDTAYLTGLERGFADQVAQAAAEAYDAIGHEVNLGSPKQLQEVLF 567 Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN-HIN 693 +L P KTKTG A E +P ++++L R +K++ T L + H + Sbjct: 568 GELDMPKTKKTKTGYTTDAAALAELYAKTGHPFLEHLLAHRDAAKLRVTVEGLLKSVHPD 627 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF-ISPPTKKLISADYSQ 752 R +HT + TGRL+S EPNLQNIPI+T+ G++IRRAF + + L++ADYSQ Sbjct: 628 GR---IHTTFQQTIAATGRLSSTEPNLQNIPIRTEAGRQIRRAFRVGEGFESLLTADYSQ 684 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IE+RI+AH++ L + F D+HR V + +FGV V+ +MR K +++ + YG+ Sbjct: 685 IEMRIMAHLSGDEGLIEAFRTGEDLHRYVGSRVFGVEPAGVTAEMRSKVKAMSYGLAYGL 744 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S F L+ QL I EA + YF RF G+ EY++ R GY T+ GRR + ++ Sbjct: 745 SAFGLSQQLGIATGEAQGLMDDYFARFGGVREYLDGVVEEARATGYTATVLGRRRYLPDL 804 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 S R + ER A+NAPIQGSAADI + AM+ V + L+ L +++LLQ+HDELV EV Sbjct: 805 TSDNRQRRQMAERMALNAPIQGSAADIIKLAMLGVQRELDARGLRSRLLLQVHDELVVEV 864 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 E A ++ M A L VPL V++ W + Sbjct: 865 APGEREAAEDVLRTQMGAA----YTLDVPLDVSVGSGETWHDAG 904 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 107/286 (37%), Positives = 153/286 (53%), Gaps = 9/286 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DG S YRAFYA P G NA+ GF +ML KLL + + +H AV FD Sbjct: 19 LLLIDGHSMAYRAFYALPDTMATTSGQVTNAVYGFTSMLTKLLGDEQP----THLAVAFD 74 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +FR E Y +YK R + P Q+PL++ +A +P +E +GFEADDIIAT Sbjct: 75 VSRRSFRTERYAEYKGTRSETPPPFKGQVPLIKDVLEALRVPTLEREGFEADDIIATLAG 134 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMVCL 182 A G V + S D+D +QLV L V+ + E V +K+G+PPE+ L Sbjct: 135 QASAAGMEVLVCSGDRDSIQLVDADVTLLYPVRGVSEMARFTPETVAEKYGVPPEQYPDL 194 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL G+S DN+PG+PG+G KTAA + ++G LE +L +K K EN+ + RL Sbjct: 195 AALVGESSDNLPGVPGVGPKTAAKWVTQFGGLEPLLAGVGELKGKA-AENLRAAVDQVRL 253 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +R+L L DV + + L+L + + AL+F L +R+ Sbjct: 254 NRELNALLRDVVLEYGPDDLVLRGFDREAVHRIADALQFGVLRDRL 299 >gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 905 Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 165/527 (31%), Positives = 276/527 (52%), Gaps = 41/527 (7%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K V +G + G D L +Y++ GR S + +++ + Y +E++ Sbjct: 399 KVMHNAKDALRVFPEHGWRVDGITMDTALAAYLVKPGRRSFALDALS---VEYLHRELVP 455 Query: 523 SRKSSIPIDKISDSQV----QEHA-----IENSNVILQLWLLLRPKLIVEKLLHVYERLD 573 + +D Q+ EHA + + +L L +L + ++ Sbjct: 456 A---------AADGQLAFGTDEHAEADALMAQARAVLDLGDAFTARLEEVGATELLHDME 506 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 P +++++ME GI D+ L+ + + + + + G +FNL SPKQL ++ Sbjct: 507 LPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAVKEAHATVGHEFNLGSPKQLQEVF 566 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQIN--CGDN----PIIKNILEWRQLSKIKSTYADS 687 F +L P KTKT D + + G P+I +L R+ ++++ST + Sbjct: 567 FGELNLPKTKKTKT----GYTTDADALAWLAGQTEHELPVI--MLRHREQARLRSTV-EG 619 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + R+HT +S TGRL+S +PNLQN+P++TD G+ IRR F+ + L+ Sbjct: 620 LIKTVAA-DGRIHTTFSQTVAATGRLSSTDPNLQNVPVRTDEGRAIRRGFVVGEGFESLM 678 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 +ADYSQIELR++AH+++ L + F + D+H VA+++FGV +V +MRR K +++ Sbjct: 679 TADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSY 738 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 + YG+S F L+ QL I EA + YF RF G+ +Y+ + R GY T+ GRR Sbjct: 739 GLAYGLSAFGLSQQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGRR 798 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + ++NS R ER A+NAPIQG+AADI + AM+ V ++L + L++++LLQ+HD Sbjct: 799 RYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAMLRVDRALREAGLSSRLLLQVHD 858 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E+V E+ E I+ M A + L PL V++ V +W+ Sbjct: 859 EIVLEISPGERDEVETIVRREMSSA----VELSAPLDVSVGVGADWE 901 Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 116/327 (35%), Positives = 168/327 (51%), Gaps = 25/327 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G NAI GF +ML N+ ++ +HFAV F Sbjct: 19 LLLMDGHSLAYRAFFALPAENFSTASGQTTNAIYGFASML----ANTLRDEAPTHFAVAF 74 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R++ YP+YKANR P+ Q+ L+ + GFEADDIIAT Sbjct: 75 DVSRKTWRSKDYPEYKANRSATPDEFKGQVELIGELLDTMNAVRFAVDGFEADDIIATLA 134 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EGF V I++ D+D QLVS TT LY T V E + E V +K+G+ P + Sbjct: 135 TQAEAEGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVQEKYGLTPSQYPD 194 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ A +K K ++ ++ E + Sbjct: 195 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERADEVKGKV-GQSFRDHLEAVK 253 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT--KLINRVATTYDCDAANI 299 L+R L L DV + P+ L + L +FL+ LE L R+ Sbjct: 254 LNRHLTELVRDVELAKPVAGLERAPYDRSALKNFLEILEIRNPSLRERL----------- 302 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTI 326 + +D TE++ A E I+ D ++ Sbjct: 303 --LAVDPGATEDEAPAPEAGIELDGSV 327 >gi|260654849|ref|ZP_05860337.1| DNA polymerase I [Jonquetella anthropi E3_33 E1] gi|260630564|gb|EEX48758.1| DNA polymerase I [Jonquetella anthropi E3_33 E1] Length = 848 Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 143/403 (35%), Positives = 224/403 (55%), Gaps = 11/403 (2%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGD 631 +D P++ + +ME G+ +D + +A++ +L + I +G NL+SPKQ+G+ Sbjct: 450 VDLPLLPALVRMEQAGVHLDGPAMVAFTAQLEASLDRVSGEILTYAGGPINLNSPKQVGE 509 Query: 632 ILFTKLKFPSGAKTKTGQWKTTAQDLEQI--NCGD-NPIIKNILEWRQLSKIKSTYADSL 688 +LF KL P +T + T LE + + GD P+ +LE R+LSK+ S +A + Sbjct: 510 LLFEKLGLPVIKRTAQKGYSTDVSVLETLCRSVGDICPVPALLLEHRELSKMLSGFA--V 567 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISA 748 P R VH+ + +T TGRL+S +PNLQN+P ++LG ++ R + P ++A Sbjct: 568 PLAAASRDGVVHSTFEAQTTGTGRLSSRDPNLQNLPNYSELGGQLCRCLTAGPGGVFVAA 627 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELR+LAH++ L ++FE DIH AA I G+ + V+ + RR AKT+ F + Sbjct: 628 DYSQIELRVLAHLSGERRLREIFEAGRDIHTETAAMILGIPADSVTKEQRRMAKTVTFGL 687 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YG+S F LA +L + ++EA + YF PG+ EY++ T R+ GY +T +GR Sbjct: 688 LYGMSAFGLADRLSVGQAEARGIMDAYFAALPGVREYVDATVAEARRRGYSQTAYGRIRP 747 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 DE+ + + + R R AIN+P+QG+AADIT+ AMI+V + L M+LQ+HD + Sbjct: 748 LDEVATGRQTDRGHARRVAINSPVQGTAADITKMAMITVDRELA--AAGVPMVLQVHDSI 805 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 V E + + M A + L VPL V K Sbjct: 806 VCRTTPENAEPVGKKLAEFMTGA----VKLSVPLAVETKTGKT 844 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/257 (36%), Positives = 137/257 (53%), Gaps = 11/257 (4%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + LVDG +RAF+A P ++ +G NA GF NML + + + + + V Sbjct: 10 ERRILLVDGHGIAFRAFFALPEMTAP-NGTHTNAAVGFFNMLGRAVTAHQPDRVV----V 64 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E++ DYKANRP P Q+P++ + GI +E G EADD+I Sbjct: 65 AFDMKGPTFRHELFADYKANRPATPPEFSEQMPIIHQLLASAGIDVMESAGLEADDLIGA 124 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 E + I+S+DKD++Q++ P + K E + E ++WG PP M Sbjct: 125 AA-CQWSEDAQILILSSDKDILQVLGPGVTILRPAKGVSDVEIVTAESFAQEWGFPPRLM 183 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 V AL GD +DN+PG+P +G KTA LL YG++E IL +A + R+ + E+ Sbjct: 184 VDYLALVGDKVDNVPGVPSVGDKTAKRLLSSYGSIEGILEHADE-QTPALRKKLGEFGAQ 242 Query: 240 ARLSRKLVMLRTDVPIT 256 A +RKL LR DV +T Sbjct: 243 ALETRKLTKLRCDVDMT 259 >gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 884 Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 165/527 (31%), Positives = 276/527 (52%), Gaps = 41/527 (7%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K V +G + G D L +Y++ GR S + +++ + Y +E++ Sbjct: 378 KVMHNAKDALRVFPEHGWRVDGITMDTALAAYLVKPGRRSFALDALS---VEYLHRELVP 434 Query: 523 SRKSSIPIDKISDSQV----QEHA-----IENSNVILQLWLLLRPKLIVEKLLHVYERLD 573 + +D Q+ EHA + + +L L +L + ++ Sbjct: 435 A---------AADGQLAFGTDEHAEADALMAQARAVLDLGDAFTARLEEVGATELLHDME 485 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 P +++++ME GI D+ L+ + + + + + G +FNL SPKQL ++ Sbjct: 486 LPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAVKEAHATVGHEFNLGSPKQLQEVF 545 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQIN--CGDN----PIIKNILEWRQLSKIKSTYADS 687 F +L P KTKT D + + G P+I +L R+ ++++ST + Sbjct: 546 FGELNLPKTKKTKT----GYTTDADALAWLAGQTEHELPVI--MLRHREQARLRSTV-EG 598 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + R+HT +S TGRL+S +PNLQN+P++TD G+ IRR F+ + L+ Sbjct: 599 LIKTVAA-DGRIHTTFSQTVAATGRLSSTDPNLQNVPVRTDEGRAIRRGFVVGEGFESLM 657 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 +ADYSQIELR++AH+++ L + F + D+H VA+++FGV +V +MRR K +++ Sbjct: 658 TADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSY 717 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 + YG+S F L+ QL I EA + YF RF G+ +Y+ + R GY T+ GRR Sbjct: 718 GLAYGLSAFGLSQQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGRR 777 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + ++NS R ER A+NAPIQG+AADI + AM+ V ++L + L++++LLQ+HD Sbjct: 778 RYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAMLRVDRALREAGLSSRLLLQVHD 837 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E+V E+ E I+ M A + L PL V++ V +W+ Sbjct: 838 EIVLEISPGERDEVETIVRREMSSA----VELSAPLDVSVGVGADWE 880 Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 114/324 (35%), Positives = 166/324 (51%), Gaps = 25/324 (7%) Query: 10 VDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP 68 +DG S YRAF+A P + G NAI GF +ML N+ ++ +HFAV FD Sbjct: 1 MDGHSLAYRAFFALPAENFSTASGQTTNAIYGFASML----ANTLRDEAPTHFAVAFDVS 56 Query: 69 AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIA 128 T+R++ YP+YKANR P+ Q+ L+ + GFEADDIIAT A Sbjct: 57 RKTWRSKDYPEYKANRSATPDEFKGQVELIGELLDTMNAVRFAVDGFEADDIIATLATQA 116 Query: 129 EKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVCLQA 184 E EGF V I++ D+D QLVS TT LY T V E + E V +K+G+ P + A Sbjct: 117 EAEGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVQEKYGLTPSQYPDFAA 176 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSR 244 L GD DN+PGIPG+G KTAA + ++G+ ++ A +K K ++ ++ E +L+R Sbjct: 177 LRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERADEVKGKV-GQSFRDHLEAVKLNR 235 Query: 245 KLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT--KLINRVATTYDCDAANIEPV 302 L L DV + P+ L + L +FL+ LE L R+ + Sbjct: 236 HLTELVRDVELAKPVAGLERAPYDRSALKNFLEILEIRNPSLRERL-------------L 282 Query: 303 VLDINTTENKGIAIETEIDRDTTI 326 +D TE++ A E I+ D ++ Sbjct: 283 AVDPGATEDEAPAPEAGIELDGSV 306 >gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 913 Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 165/527 (31%), Positives = 276/527 (52%), Gaps = 41/527 (7%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ HN K V +G + G D L +Y++ GR S + +++ + Y +E++ Sbjct: 407 KVMHNAKDALRVFPEHGWRVDGITMDTALAAYLVKPGRRSFALDALS---VEYLHRELVP 463 Query: 523 SRKSSIPIDKISDSQV----QEHA-----IENSNVILQLWLLLRPKLIVEKLLHVYERLD 573 + +D Q+ EHA + + +L L +L + ++ Sbjct: 464 A---------AADGQLAFGTDEHAEADALMAQARAVLDLGDAFTARLEEVGATELLHDME 514 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 P +++++ME GI D+ L+ + + + + + G +FNL SPKQL ++ Sbjct: 515 LPTSELLARMERHGIAADRAHLESMEHLFAGAVQQAVKEAHATVGHEFNLGSPKQLQEVF 574 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQIN--CGDN----PIIKNILEWRQLSKIKSTYADS 687 F +L P KTKT D + + G P+I +L R+ ++++ST + Sbjct: 575 FGELNLPKTKKTKT----GYTTDADALAWLAGQTEHELPVI--MLRHREQARLRSTV-EG 627 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLI 746 L + R+HT +S TGRL+S +PNLQN+P++TD G+ IRR F+ + L+ Sbjct: 628 LIKTVAA-DGRIHTTFSQTVAATGRLSSTDPNLQNVPVRTDEGRAIRRGFVVGEGFESLM 686 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 +ADYSQIELR++AH+++ L + F + D+H VA+++FGV +V +MRR K +++ Sbjct: 687 TADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSY 746 Query: 807 SIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 + YG+S F L+ QL I EA + YF RF G+ +Y+ + R GY T+ GRR Sbjct: 747 GLAYGLSAFGLSQQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGRR 806 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 + ++NS R ER A+NAPIQG+AADI + AM+ V ++L + L++++LLQ+HD Sbjct: 807 RYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAMLRVDRALREAGLSSRLLLQVHD 866 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E+V E+ E I+ M A + L PL V++ V +W+ Sbjct: 867 EIVLEISPGERDEVETIVRREMSSA----VELSAPLDVSVGVGADWE 909 Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 116/327 (35%), Positives = 168/327 (51%), Gaps = 25/327 (7%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G NAI GF +ML N+ ++ +HFAV F Sbjct: 27 LLLMDGHSLAYRAFFALPAENFSTASGQTTNAIYGFASML----ANTLRDEAPTHFAVAF 82 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R++ YP+YKANR P+ Q+ L+ + GFEADDIIAT Sbjct: 83 DVSRKTWRSKDYPEYKANRSATPDEFKGQVELIGELLDTMNAVRFAVDGFEADDIIATLA 142 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE EGF V I++ D+D QLVS TT LY T V E + E V +K+G+ P + Sbjct: 143 TQAEAEGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVQEKYGLTPSQYPD 202 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ A +K K ++ ++ E + Sbjct: 203 FAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERADEVKGKV-GQSFRDHLEAVK 261 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT--KLINRVATTYDCDAANI 299 L+R L L DV + P+ L + L +FL+ LE L R+ Sbjct: 262 LNRHLTELVRDVELAKPVAGLERAPYDRSALKNFLEILEIRNPSLRERL----------- 310 Query: 300 EPVVLDINTTENKGIAIETEIDRDTTI 326 + +D TE++ A E I+ D ++ Sbjct: 311 --LAVDPGATEDEAPAPEAGIELDGSV 335 >gi|269792689|ref|YP_003317593.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100324|gb|ACZ19311.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589] Length = 836 Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 147/426 (34%), Positives = 237/426 (55%), Gaps = 17/426 (3%) Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611 LW +R + E + + R+D P+ V+ ME GI +D + L+ + + + L +LEE Sbjct: 418 LWDQIRSDPLWEGVRELVTRVDHPLSAVLVDMEREGIGLDVEGLRGLRERLERALGALEE 477 Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIK-- 669 I +G + NL SPKQ+ +LF +L P +TKTG T LE+++ P+ + Sbjct: 478 GIAREAGAQVNLQSPKQVAWLLFERLGLPPVKRTKTGL-STDVGVLEELSRLPEPLGRVP 536 Query: 670 -NILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728 ILE R++SK+ + + + P + + + + T TGRL+S +PN+QN+P Sbjct: 537 SMILEHREISKLITAFVN--PFLEQGSSGVIRSTFDQTGTGTGRLSSRDPNVQNLPQFGH 594 Query: 729 LGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 + RR + P ++ +SADYSQIELR+LAH++ L + FE D+H A+ I Sbjct: 595 WAVEFRRCLV--PVEEGNVFVSADYSQIELRVLAHLSGEERLIRAFEEGADVHARTASWI 652 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 +GV+ + VSP+ RR AK +NF ++YG+ LA ++ + RSEAA+ ++RYF PG+ E+ Sbjct: 653 YGVDPQAVSPEQRRFAKVVNFGLLYGMGAHGLAQRMGVSRSEAAEVMERYFSALPGVREF 712 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 + + GY T+ GR E+++ + +R AIN PIQGSAADI R+AM+ Sbjct: 713 TRRMVEQAKARGYAATLMGRVRPLSEVSTVEGRGAGAIDRVAINTPIQGSAADIARKAMV 772 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 +H++L +M+LQ+HD +V VPE + ++++ ME A +L VPL V Sbjct: 773 ELHRALAGGD--CRMVLQVHDSIVCSVPEGMASRVAELMREVMEGAA----SLSVPLVVE 826 Query: 966 IKVSNN 971 +K Sbjct: 827 VKTGGT 832 Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 116/322 (36%), Positives = 169/322 (52%), Gaps = 23/322 (7%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + LVDG +RAFYA P LS DG PVNA+ GF NML+K+L++ R + +A+ Sbjct: 3 DRFLLVDGHGLAFRAFYALPALS-APDGTPVNAVLGFLNMLYKVLEDQRP----TGWAIF 57 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD P R E+ YKA R P+ QLP++ +A G P +G EADD+IA Sbjct: 58 FDPPGPVIRREVLESYKAGRRPTPQEFKVQLPIIIDLLEALGHPVHVREGQEADDVIAAT 117 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVK---EEKI-DIEHVIKKWGIPPEKMV 180 G V I+S DKDL+Q++SP+ + VK E ++ D E ++++ PP M Sbjct: 118 AVNLSGSG-EVVILSADKDLLQVISPSVKVCRPVKGVSEFRVYDQEAFLEEYRFPPALMA 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ALTGDS+DNIPG+PGIG K A L+ G LE+I R+ KR+ + E E A Sbjct: 177 DYLALTGDSVDNIPGVPGIGDKGARELVSSLGPLESIYEALDRLSPAKRK-RLEEGRELA 235 Query: 241 RLSRKLVMLRTDVPI-TIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANI 299 LSR+LV+ VP ++ + L+ + R + L+ L +LI R+ A + Sbjct: 236 FLSRQLVL---PVPTESLDVRDLVPREAQRGRALRILEGLAMRQLIQRLGLDGADRGAGV 292 Query: 300 EPVVLDINTTENKGIAIETEID 321 E + G A+E+ ++ Sbjct: 293 E--------VSSTGGAVESSLE 306 >gi|184200833|ref|YP_001855040.1| DNA polymerase I [Kocuria rhizophila DC2201] gi|183581063|dbj|BAG29534.1| DNA polymerase I [Kocuria rhizophila DC2201] Length = 960 Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 152/429 (35%), Positives = 232/429 (54%), Gaps = 16/429 (3%) Query: 556 LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD 615 LR L + L + L+ P+ ++++ME TGI +D+ + + ++ + E Sbjct: 535 LRALLEADGQLGLLTELEMPLAVILARMEATGIAMDRPGIDVLFEDLQHPIDQAFEQAQA 594 Query: 616 LSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-----NCGDNPIIKN 670 + NL S KQL ++F +L P KTKTG + + I + + + Sbjct: 595 QIDHEVNLGSTKQLQAVMFDELGLPKTKKTKTGYTTDASAVADLIGKVSPDTAGSRFLVA 654 Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730 ++ WR+ SK+K A L + I + R+HT Y TGRL+S PNLQNIP++T+ G Sbjct: 655 LMNWREYSKLKQIVA-GLRDAIAE-DGRIHTTYQQTVAATGRLSSTGPNLQNIPVRTEQG 712 Query: 731 QKIRRAFI-----SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEI 785 Q+IR F+ P + L++ADYSQIE+RI+AH++ L + F D+HR V + + Sbjct: 713 QRIRDVFVVGEDTQGPFECLMTADYSQIEMRIMAHLSGDEGLIEAFRGGEDLHRFVGSRV 772 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 F V E V+PQMR K +++ ++YG+S + L+ QL I EA + YF RF G+ ++ Sbjct: 773 FDVAPEDVTPQMRSKVKAMSYGLVYGLSSYGLSQQLHIGVDEARTMMSGYFERFGGVRDF 832 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 + R GY ETI GRR + ++ S R ER A+NAPIQGSAADI ++AMI Sbjct: 833 LRGVVEEARSKGYTETIDGRRRYLPDLTSDNRQARQAAERMALNAPIQGSAADIIKKAMI 892 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 V ++L D +L +++LLQ+HDEL+ EV E +I+ M A L VPL VN Sbjct: 893 GVDRALRDGQLRSRVLLQVHDELIVEVAPGEREEVERILRTEMAGAA----ELTVPLDVN 948 Query: 966 IKVSNNWQE 974 + W + Sbjct: 949 VGTGRTWHQ 957 Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 105/320 (32%), Positives = 163/320 (50%), Gaps = 29/320 (9%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRK-----------HDGLPVNAIAGFCNMLWKLLQNS 52 E L L+DG S +RAF+A LSR +G+ + GF N + KL+ Sbjct: 40 EKRLLLIDGHSLAFRAFFA---LSRAAEYGNGPGFVTSEGVHTEGVYGFVNTMVKLV--- 93 Query: 53 RKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEI 112 +E +H V FD T R++ Y +YK R + PE Q+P ++ +A G+P + + Sbjct: 94 -REEKPTHLVVSFDLEGPTLRSQEYGEYKGGRDETPEEFHGQVPNIQRVLEALGVPIVTM 152 Query: 113 QGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKE---EKIDIEHV 168 +G EADD++AT A E F V + S D+D Q+++ T +Y ++D V Sbjct: 153 EGHEADDVLATLASRAAAEDFEVLVFSGDRDAFQMITDHVTVVYPGRTPSDLRRMDAAAV 212 Query: 169 IKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKK 228 +K+ + P+ L ALTG++ DN+PG+PG+G AA + YG ++++L +A +I KK Sbjct: 213 YEKYKVAPQNYPDLAALTGETADNLPGVPGVGPGFAAKWITAYGPVDSLLEHAGQITGKK 272 Query: 229 RRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF-TKLINR 287 E + E E R +RKL L TD+P+ I L L + R+ LEF ++L R Sbjct: 273 -GEALRENEELVRRNRKLNRLVTDLPLEIDLSATALPKAHAERVAEVFDELEFGSQLRGR 331 Query: 288 V-----ATTYDCDAANIEPV 302 + A T D A + PV Sbjct: 332 LLEAFAAQTSGDDVAALAPV 351 >gi|288575147|ref|ZP_06393504.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570888|gb|EFC92445.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002] Length = 854 Score = 258 bits (658), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 159/435 (36%), Positives = 249/435 (57%), Gaps = 20/435 (4%) Query: 550 LQLWLL---LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 + LW L L + L V +D P++ V+ ME +GI++++ +L+ V +++ + L Sbjct: 429 MALWRLRDDLSQTIESRGLSEVLYGIDMPLVPVLVSMEKSGIKLEEPVLQDVISDLKERL 488 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNP 666 + E I +GE NL+SPKQ+G +LF KL P KTKTG + T LEQ+ P Sbjct: 489 ERIVEEITSAAGESINLNSPKQVGCLLFEKLGLPPVKKTKTG-YSTDVTVLEQLAELPEP 547 Query: 667 ---IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI 723 + +LE R LSK+ S +A L + + TF S +T TGRL+S +PNLQN+ Sbjct: 548 HNAVPSMLLEHRALSKMSSGFALPLMSSVCGDGIIRSTFES-DTTGTGRLSSRDPNLQNL 606 Query: 724 PIKTDLGQKIRRAFISPPTKK---LISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 P + +I+ + I P +K ++ADYSQ+ELR+LAHI+ L +F + DIH Sbjct: 607 PAYGEWSDRIKSSLI--PREKGRCFVAADYSQVELRVLAHISGEKRLADIFRSGRDIHTE 664 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A+ +FGV+ V+ ++RR AK + F ++YG+S F LA +L + RSEA + RYF P Sbjct: 665 TASMVFGVDSSMVTKELRRSAKMVTFGLLYGMSAFGLAKRLGVGRSEADRIMSRYFAALP 724 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 G+ Y+ K+ + GY ET+FGR +E+ + + R R AIN+PIQG+AAD+ Sbjct: 725 GVEAYVTKSADEAIAKGYTETLFGRIRPLEEVVTGNTRDRGHIRRVAINSPIQGTAADLA 784 Query: 901 RRAMISVHKSL-EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 ++AMI+V +S ED ++ M+LQ+HD +V E PEE S+ ++ +++ +L Sbjct: 785 KKAMIAVSRSFAEDPDVS--MVLQVHDSIVCECPEER----SEEVLAELQEIMKNVASLA 838 Query: 960 VPLKVNIKVSNNWQE 974 VPL+ K+ + E Sbjct: 839 VPLETEGKIGFSLAE 853 Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 97/252 (38%), Positives = 142/252 (56%), Gaps = 13/252 (5%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + VDG +RAFYA P L+ DG P NA+ GF NML K+ +KE +V Sbjct: 3 EGPIMFVDGHGLAFRAFYAIPELT-APDGTPTNALVGFFNMLSKI----KKEWAPQSLSV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD P TFR+E++ +YK R PE QLP+++ GIP I G EADD+I Sbjct: 58 VFDAPGKTFRHEMFEEYKKGRKPTPEEFKVQLPILKKMLGLLGIPVICRPGVEADDVIGA 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 + +G V ++++DKD++Q++ + K + D E ++G PP +M Sbjct: 118 VSREYAYKGTPVLVVTSDKDMLQILDEGITVIRPGKGISSFNRWDAETFQGEYGFPPARM 177 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 AL GDS+DN+PG+PGIG KTA LL +YG+LE IL + + + +R++ LE E Sbjct: 178 ADYLALVGDSVDNVPGVPGIGDKTARRLLGKYGDLEGILAHTADLTAGQRKK--LE--EN 233 Query: 240 ARLSRKLVMLRT 251 A L+RK ++L T Sbjct: 234 ADLARKSLILTT 245 >gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] Length = 882 Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 142/407 (34%), Positives = 226/407 (55%), Gaps = 22/407 (5%) Query: 580 VSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF 639 + +ME GI +D+ LL+Q+ + + + + YD G + NLSSPKQL ++LF +L Sbjct: 483 LGEMEDAGIAVDEGLLEQLRQDFDGRVFAAARSAYDAIGGEVNLSSPKQLQEVLFDQLGL 542 Query: 640 PSGAKTKTGQWKTTAQDLEQINC-----------GDNPIIKNILEWRQLSKIKSTYADSL 688 P K K+G T A L + + ++LE R K++ + L Sbjct: 543 PPTRKMKSGH-TTNADALANLAVSIAGREDDKALAGQQFLASLLEHRDAIKLRQSVV-GL 600 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLIS 747 + R R+HT + + TGRL+S +PNLQNI +T G+ IR AF+ + +++ Sbjct: 601 QRSV--RDGRIHTTFQQTAAATGRLSSTDPNLQNIHARTAEGRSIRAAFVPGEGYESIMT 658 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 ADYSQIE+R++A ++ L + F D+H VA+ ++GV EKV+ R H K +++ Sbjct: 659 ADYSQIEMRLMAALSGDVELIEAFREGADLHTYVASRVYGVPEEKVTADDRSHIKAMSYG 718 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 + YG+S + L+ QLRI ++A + YF RF + Y++ R+ GY +TI GRR Sbjct: 719 LAYGLSAYGLSKQLRISVAQAQALMDDYFSRFGRVRTYLDSLVQEARKEGYTQTILGRRR 778 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + ++NS R ER A+NAPIQGSAAD+ + AM++V S+++ + +++LLQ+HDE Sbjct: 779 YLPDLNSTNRQAREAAERMALNAPIQGSAADVIKLAMVAVVDSMKEMR--SRVLLQVHDE 836 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LV E+ E ++ ME A + L VPL V I V ++W+E Sbjct: 837 LVLEIAPGERDAVEAVVRREMENA----VELAVPLSVGIGVGSSWRE 879 Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 108/290 (37%), Positives = 152/290 (52%), Gaps = 9/290 (3%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLP-VNAIAGFCNMLWKLLQNSRKESIASHF 61 K++ L L+DG S +RAFYA + DG NA++GF KL+ + +H Sbjct: 2 KDSTLLLIDGHSLAFRAFYALRAENFVTDGGQHTNAVSGFLTTFLKLIADYEP----THI 57 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 AV FD P TFR +Y DYK R + P Q+ L++ + A G+ + ++ +EADDI+ Sbjct: 58 AVAFDLPGGTFRTRMYGDYKGGRGETPAEFAGQIELIQQSLDAMGVRWLTVEDYEADDIV 117 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEK--IDIEHVIKKWGIPPEK 178 AT + E+ G V I S DKD QLV T LY + E +D + V+ K G+ P Sbjct: 118 ATLSARGEESGMQVYISSGDKDAFQLVDERCTVLYPMPRSETQVLDADGVLNKTGVLPSN 177 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 L AL G++ DNIPG+PG+G KTAA + YG +E IL +A IK K E++ AE Sbjct: 178 YRDLAALVGENADNIPGVPGVGPKTAAKWIAAYGGVEEILAHADEIKGKA-GESLRANAE 236 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 RL+ L L D+PI +E L + L + L F L +RV Sbjct: 237 QVRLNMTLNELVRDLPIVEDIEELRPIGVDRNALHALFDTLGFRNLRSRV 286 >gi|313665520|ref|YP_004047391.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50] gi|312949975|gb|ADR24571.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50] Length = 911 Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 145/416 (34%), Positives = 242/416 (58%), Gaps = 18/416 (4%) Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK----FNL 623 +Y ++D P+I+V+ +E+ GI ID++ LK + +I K + +E + + E+ FN Sbjct: 499 LYLKIDYPLIEVLYDIEVQGILIDKEQLKLQTEQILKKINHIEWQMKIMVAEEIDNNFNF 558 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 SSPKQ+ ++LF KLK P+ K TT++++ + +PII +LE R+ +K+ +T Sbjct: 559 SSPKQIQELLFDKLKLPNLEKG------TTSKEVLEKLITFHPIINLLLEHRKYTKLYTT 612 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTK 743 Y I +VHT ++ T TGRL+S PN+QNI I+ + +++R+ FI+ K Sbjct: 613 YLKGFEKFI-FDDNKVHTIFNHTLTNTGRLSSSYPNIQNISIRDNEQKEVRKIFITNNNK 671 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 +S DYSQIELR+LA ++K + L + F + DIH A IF ++ +++ + RR AK Sbjct: 672 TFLSYDYSQIELRVLAQMSKESNLIKAFNQNADIHLQAAKLIFNISDNQITSEQRRIAKV 731 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 NF I+YG++ F LA L + ++A IK Y+ FP + ++ EK GY+ T+ Sbjct: 732 FNFGILYGLTDFGLANDLNMNVNQAKQMIKDYYSAFPSLLDFKEKQVEIATNQGYITTLS 791 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 RR + E+NS +IR +R A+N PIQG+A+DI + AMIS++K +++ L K++ Q Sbjct: 792 NRRRYISELNSTNHNIRQFGKRIAVNTPIQGTASDILKVAMISIYKKIKEQNLDAKIVCQ 851 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKA---CLPKINLR----VPLKVNIKVSNNW 972 IHDE++ EV ++ +I+++ ++ A +N++ V LKV V W Sbjct: 852 IHDEIILEVDNNQLEQTKKIVINELQNALEKLFLDLNIKDQVVVKLKVGESVGKTW 907 Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 102/302 (33%), Positives = 154/302 (50%), Gaps = 21/302 (6%) Query: 7 LFLVDGSSFIYRAFYATPL-----LSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + +VDG+S I+RAFYAT L + G+ NA+ F NML ++ + H Sbjct: 5 ILVVDGNSLIFRAFYATAYSPNTSLLKTKSGVLTNAVYSFINMLLSVIH---QRGPYDHI 61 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 + FD TFR+++ DYKANR K P L+ Q +VR I E + EADDI+ Sbjct: 62 LIAFDKGKKTFRHDLLSDYKANRIKTPNELVEQFSIVREFLTKANIQWFEQENIEADDIV 121 Query: 122 ATYTYIAEKE--GFAVTIISTDKDLMQLVS-PTTCL--YDTVKE-EKIDIEHVIKKWGIP 175 + AEK+ I+S+DKD+ QL++ CL V E E+ID + +KW I Sbjct: 122 GSICKYAEKQFDDLQAEILSSDKDMYQLITNKVICLNPVQGVNELEEIDTNKLFEKWQIL 181 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P ++ +A+ GDS DN+ G+ GIG K A L+Q+Y +LENI N ++K + + + + Sbjct: 182 PNQVPDYKAIVGDSSDNLKGVNGIGQKGAIKLIQQYESLENIYNNLEQLKGAIKTK-LEQ 240 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILE--DCNGPRLISFLKALEFTKLINRVATTYD 293 + A L + L +++TDV LE+ D N + FL E L R + + Sbjct: 241 DKQMAFLCKDLAIIKTDV----VLENFSFNKLDFNVNNIYEFLNKYEMYSLKKRFSNILN 296 Query: 294 CD 295 D Sbjct: 297 LD 298 >gi|256825133|ref|YP_003149093.1| DNA polymerase I [Kytococcus sedentarius DSM 20547] gi|256688526|gb|ACV06328.1| DNA polymerase I [Kytococcus sedentarius DSM 20547] Length = 904 Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 149/413 (36%), Positives = 233/413 (56%), Gaps = 19/413 (4%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LSGEKFNLSSPKQLG 630 L+ P+ + ME TGI +D D L + E + + + + + NL SPKQL Sbjct: 498 LELPLARHLVAMEATGIAVDTDRLDALEGEFADQVAQATADAHAAIDDPGVNLGSPKQLQ 557 Query: 631 DILFTKLKFPSGAKTKTGQ--------WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 ++LF +L P KTKTG W AQ E ++ +L R +++++S Sbjct: 558 EVLFERLGLPKTKKTKTGYTTDADALVW-LRAQASEGSTA--ETFLEALLRHRDVTRLRS 614 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPP 741 T L ++ R+HT Y TGRL+S++PNLQNIPI+T+ G++IR F+ Sbjct: 615 TV-QGLQKAVDA-DGRIHTTYQQTIAATGRLSSVDPNLQNIPIRTEAGRRIREVFVVGSG 672 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 L+SADYSQIE+RI+AH++ L + F D+HR V +++F V E+V+ +MR Sbjct: 673 FDHLMSADYSQIEMRIMAHLSGDEGLIEAFRAGEDLHRYVGSKVFQVAPEEVTAEMRAKV 732 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K +++ + YG+S F L+ QL I +EA+ + YF RF G+ +Y+ + R+ GY ET Sbjct: 733 KAMSYGLAYGLSSFGLSKQLGITPAEASALMDEYFARFGGVRDYLRAVVDEARRTGYTET 792 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 + GRR ++ S R + ER A+NAPIQGSAAD+ + AM+ V +L+ +LA+++L Sbjct: 793 MLGRRRPLPDLASTNRQRREMAERMALNAPIQGSAADVMKLAMLKVEDALDAQRLASRVL 852 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 LQ+HDELV EV +E + ++ +M A ++L VPL V+I +W + Sbjct: 853 LQVHDELVLEVAPDEGSAVEALVREAMGSA----LDLDVPLDVSIGTGRSWHD 901 Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 109/307 (35%), Positives = 161/307 (52%), Gaps = 16/307 (5%) Query: 5 NHLFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DG S YRAF+A P + G NA+ GF +ML +L++ + +H AV Sbjct: 2 TRLLLLDGHSLAYRAFFALPAENFSTATGQHTNAVYGFTSMLINVLRDEQP----THVAV 57 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E Y +YKA R K P+ Q+ LV+ A GI + +GFEADD+IAT Sbjct: 58 AFDLSRQTFRSEEYAEYKAGRAKTPDEFAGQVSLVQEVLDAMGIAHVSKEGFEADDVIAT 117 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPP 176 T A G V I S D+D +QLV P + D + +E +K+G+PP Sbjct: 118 LTTAARSAGMEVLICSGDRDALQLVDEKVTVLYPRKGVSDLARMTPTAVE---EKYGVPP 174 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 E+ L AL G+S DN+PG+PG+G KTAA L YG+L ++ +A IK K +N ++ Sbjct: 175 ERYSDLAALVGESADNLPGVPGVGPKTAAKWLGLYGDLGGVVDHADAIKGKA-GQNFRDH 233 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDA 296 + +R+L L TDV + + L+ + + ++ ALEF L +R+ + Sbjct: 234 LDQVLRNRRLNQLVTDVELPLTLDAAAWDTFDREKVHEVFDALEFRVLRDRMFEYLGVEG 293 Query: 297 ANIEPVV 303 A + V Sbjct: 294 AEVTEAV 300 >gi|297517722|ref|ZP_06936108.1| DNA polymerase I [Escherichia coli OP50] Length = 263 Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 127/265 (47%), Positives = 182/265 (68%), Gaps = 4/265 (1%) Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGRL+S +PNLQNIP++ + G++IR+AFI+P ++SADYSQIELRI+AH+++ L Sbjct: 1 TGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLT 60 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 F DIHR AAE+FG+ +E V+ + RR AK INF +IYG+S F LA QL IPR EA Sbjct: 61 AFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQ 120 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 Y+ YF R+PG+ EY+E+T+ ++ GYVET+ GRR++ +I S + R ERAAIN Sbjct: 121 KYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAIN 180 Query: 890 APIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 AP+QG+AADI +RAMI+V L+ + +M++Q+HDELVFEV ++++ ++ I H + Sbjct: 181 APMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI-HQLM 239 Query: 950 KACLPKINLRVPLKVNIKVSNNWQE 974 + C L VPL V + NW + Sbjct: 240 ENC---TRLDVPLLVEVGSGENWDQ 261 >gi|293571802|ref|ZP_06682818.1| DNA polymerase I [Enterococcus faecium E980] gi|291608056|gb|EFF37362.1| DNA polymerase I [Enterococcus faecium E980] Length = 280 Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 132/277 (47%), Positives = 177/277 (63%), Gaps = 6/277 (2%) Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELR 756 +VHT Y T TGRL+S++PNLQNIPI+ D G+KIR+AF+ LI S+DYSQIELR Sbjct: 7 KVHTRYVQTLTQTGRLSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELR 66 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVN-IEKVSPQMRRHAKTINFSIIYGISPF 815 +LAHI+ L F DIH A +FG+ E V+P MRR AK +NF I+YGIS + Sbjct: 67 VLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDY 126 Query: 816 RLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSP 875 L+ L I R A YI YF ++PG+ EY+E+ + GYVET++ RR + +INS Sbjct: 127 GLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSR 186 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 +IR+ ER AIN PIQGSAADI + AMI + K L++ L MLLQ+HDELVFEVPE+ Sbjct: 187 NYNIRSFAERTAINTPIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEK 246 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E+ + +++ ME+A ++L VPL + W Sbjct: 247 ELESLDKLVKEVMEQA----VSLHVPLITDSSWGKTW 279 >gi|308185239|ref|YP_003929372.1| DNA polymerase I [Helicobacter pylori SJM180] gi|308061159|gb|ADO03055.1| DNA polymerase I [Helicobacter pylori SJM180] Length = 897 Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 159/463 (34%), Positives = 248/463 (53%), Gaps = 22/463 (4%) Query: 519 EILKS--RKSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERL 572 E+LK ++ IP +KI D + + +E N + +L + E LL + + Sbjct: 447 EVLKEYLKEELIPHEKIKDFKTKAEKLELLSVELNALKRLCEYFEKGGLEEGLLSLARGV 506 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 + P + V+ ME G +ID K++ E L LE I DL G FNL+SPKQLG++ Sbjct: 507 ETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLGEV 566 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 L+ KL+ P K T ++L +I +P I ILE+R+L+K+ +TY L + Sbjct: 567 LYEKLELP-----KNKSHSTDEKNLLKI-LDKHPSIPLILEYRELNKLFNTYTTPLL-RL 619 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYS 751 + ++HT + T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYS Sbjct: 620 KDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYS 679 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELR+LAH ++ L + F DIH + +FG E ++ + R AK+INF ++YG Sbjct: 680 QIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKKKRSIAKSINFGLVYG 736 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 + +L+ L IP SEA YI+ YF RFP I +Y+ + + + T+ GR +D Sbjct: 737 MGSKKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRAFD- 795 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 I+ R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE Sbjct: 796 FTGANDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFE 854 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + E+ Q I + P LRVPL+ + V+N W E Sbjct: 855 IEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFVANRWNE 894 Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 82/254 (32%), Positives = 127/254 (50%), Gaps = 17/254 (6%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ + Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKDKKN---M 61 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 62 PFIVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEMSGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E ++ ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLVKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---KKRRENILE 235 Q + GDS DN GI GIG K A LLQ+ G+LE I N +K K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGIKGIGSKNAKELLQQLGSLEKIYENLDLVKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVML 249 E+A LS++L L Sbjct: 237 DKESAFLSKELATL 250 >gi|330872927|gb|EGH07076.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 601 Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 198/672 (29%), Positives = 314/672 (46%), Gaps = 102/672 (15%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGSS++YRAF+A P L+ GLP A+ G NML L R++ S FAV+FD Sbjct: 6 LVLIDGSSYLYRAFHALPPLTTSK-GLPTGAVKGVLNMLKSL----RRQYPDSPFAVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+ +Y DYKANRP +P+ L Q+ L+ + G P + ++G EADD+I T Sbjct: 61 AKGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPLLCVEGVEADDVIGTLAR 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 + V I + DKD+ QLV L +T+ +D+ V +K+G+ PE ++ AL Sbjct: 121 SSAAADRPVIISTGDKDMAQLVDGHITLVNTMTGSALDVAGVKEKFGVGPEHIIDYLALM 180 Query: 187 GDSIDNIPGIPGIGYKTA--------ALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 GD +DNIPG+PG+G KTA + + Y LE + R K + E+ Sbjct: 181 GDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYERLETVATLPIR-GAKTLAAKLEEHRA 239 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A LS +L ++ DVP+ I L+ L + + +L+ LEF I + D A Sbjct: 240 MAFLSYELATIKIDVPLDIELDQLHCGEPDRDKLMELYAELEFKSWIEDL--QRDAKRAG 297 Query: 299 IEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKL 358 E + ++ T E K A E ++ SQF + Sbjct: 298 QE-LAVEEPTVEAKEAAYE------VILEQSQFDA------------------------- 325 Query: 359 SQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKD 418 W++KL +F ++ DA ++ + + Sbjct: 326 ---------------------WLKKLNAAPLFAFVTQSNGTDAQRAQLVGL--------- 355 Query: 419 DTSFKVET---IFIDL--SVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 SF ++T +I L S ++T+ K + K E+ K+G + K+ Sbjct: 356 --SFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKAL----KPLLEDPDKTKVGQHAKFAI 409 Query: 474 LVL--------HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEIL 521 +L GI ++G D +L SYVLDS + HD S+ K+L++T +EI Sbjct: 410 NLLANCALDGDQTQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIA 469 Query: 522 KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL-IVEKLLHVYERLDKPMIDVV 580 + D+I+ Q ++A E +++ L+L + +L + L V ++ P++ V+ Sbjct: 470 GKGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVL 529 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 + +E G +D +LL S E+ + +LE + ++GE+FNL SPKQLG IL+ KL P Sbjct: 530 AGIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMP 589 Query: 641 SGAKTKTGQWKT 652 +KT TGQ T Sbjct: 590 ILSKTATGQAST 601 >gi|219815946|gb|ACL37072.1| DNA polymerase I [uncultured bacterium] Length = 283 Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 129/283 (45%), Positives = 182/283 (64%), Gaps = 3/283 (1%) Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL-ISADYS 751 N++T RVHT Y+ A +TGRL+S PNLQNIP++T+ G++IR+AF+ L ISADYS Sbjct: 1 NRKTGRVHTSYNQAVAVTGRLSSNNPNLQNIPVRTERGREIRKAFVPRDENHLLISADYS 60 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELRI+A I+ + + F+ DIH AA+++ + V+ +MR AK++NF IIYG Sbjct: 61 QIELRIVAAISGDPNMCEAFKQGKDIHTATAAKVYNIEEADVTKEMRYKAKSVNFGIIYG 120 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 F LA L+I RSEA + I Y +FP I +Y++ F +QNGYVET++GR+ + Sbjct: 121 QGAFGLAENLKITRSEAKEIIDNYKKQFPNIQQYMDAQMKFAQQNGYVETLWGRKRWLKD 180 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 INS ++R ER AIN PIQG+AAD+ + AMI +H+ +D +KM+LQ+HDELVF+ Sbjct: 181 INSGNFTVRGYAERNAINMPIQGTAADMIKLAMIKIHREFKDRGFKSKMILQVHDELVFD 240 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++E+ II+ M+ A LP N VP I V NW E Sbjct: 241 AWKDEVDIIKPIIIECMQSA-LPLPN-DVPANAEIGVGVNWLE 281 >gi|307638123|gb|ADN80573.1| DNA polymerase I [Helicobacter pylori 908] Length = 889 Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 172/535 (32%), Positives = 276/535 (51%), Gaps = 37/535 (6%) Query: 450 LSYLKKFFEN--EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHD 504 L +L+ F +H IGH++K + +Y +S+ +D +++++ + + D Sbjct: 379 LEFLQNAFSQILQHACIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD 438 Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKL 560 A KE LK + + +KI D + + +E N + +L Sbjct: 439 EA----------LKEYLK--EDLVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGG 486 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 + E LL + ++ P + V+ ME G +ID LK + E L LE I DL G Sbjct: 487 LEEGLLTLARDIETPFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVD 546 Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 FNL+SPKQLG++L+ KL P K T ++L +I +P I ILE+R+L+K+ Sbjct: 547 FNLNSPKQLGEVLYEKLGLP-----KNKSHSTDEKNLLKI-LDKHPSIPLILEYRELNKL 600 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 +TY L + + ++HT + T TGRL+S PNLQNIP+++ G IR+ FI+ Sbjct: 601 FNTYTTPLL-RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIAS 659 Query: 741 PTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 + L+ DYSQIELR+LAH ++ L + F DIH + +FG E ++ + R Sbjct: 660 SKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRS 716 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK+INF ++YG+ +L+ L IP SEA YI+ YF RFP I +Y+ + + + Sbjct: 717 IAKSINFGLVYGMGSKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKA 776 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 T+ GR +D N ++ R +NA QGSA+D+ + M+ V + +++ + + Sbjct: 777 FTLLGRYRVFD-FNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVR 834 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +LLQ+HDEL+FE+ E+ Q I + P LRVPL+ + V+N W E Sbjct: 835 LLLQVHDELIFEIEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFVANRWDE 886 Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 131/254 (51%), Gaps = 17/254 (6%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKTKPLTNNK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +EI GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEISGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E ++ ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLVKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN GI GIG K A LLQ+ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGIKGIGSKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVML 249 E+A LS++L L Sbjct: 237 DKESAFLSKELATL 250 >gi|325996723|gb|ADZ52128.1| DNA polymerase I [Helicobacter pylori 2018] Length = 889 Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 172/535 (32%), Positives = 276/535 (51%), Gaps = 37/535 (6%) Query: 450 LSYLKKFFEN--EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHD 504 L +L+ F +H IGH++K + +Y +S+ +D +++++ + + D Sbjct: 379 LEFLQNAFSQILQHACIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD 438 Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKL 560 A KE LK + + +KI D + + +E N + +L Sbjct: 439 EA----------LKEYLK--EDLVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGG 486 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 + E LL + ++ P + V+ ME G +ID LK + E L LE I DL G Sbjct: 487 LEEGLLTLARDIETPFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVD 546 Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 FNL+SPKQLG++L+ KL P K T ++L +I +P I ILE+R+L+K+ Sbjct: 547 FNLNSPKQLGEVLYEKLGLP-----KNKSHSTDEKNLLKI-LDKHPSIPLILEYRELNKL 600 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 +TY L + + ++HT + T TGRL+S PNLQNIP+++ G IR+ FI+ Sbjct: 601 FNTYTTPLL-RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIAS 659 Query: 741 PTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 + L+ DYSQIELR+LAH ++ L + F DIH + +FG E ++ + R Sbjct: 660 SKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRS 716 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK+INF ++YG+ +L+ L IP SEA YI+ YF RFP I +Y+ + + + Sbjct: 717 IAKSINFGLVYGMGSKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKA 776 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 T+ GR +D N ++ R +NA QGSA+D+ + M+ V + +++ + + Sbjct: 777 FTLLGRYRVFD-FNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVR 834 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +LLQ+HDEL+FE+ E+ Q I + P LRVPL+ + V+N W E Sbjct: 835 LLLQVHDELIFEIEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFVANRWDE 886 Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 130/254 (51%), Gaps = 17/254 (6%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKTKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +I GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCGKISGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E ++ ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLVKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN GI GIG K A LLQ+ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGIKGIGSKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVML 249 E+A LS++L L Sbjct: 237 DKESAFLSKELATL 250 >gi|325998317|gb|ADZ50525.1| DNA polymerase I [Helicobacter pylori 2017] Length = 889 Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 172/535 (32%), Positives = 276/535 (51%), Gaps = 37/535 (6%) Query: 450 LSYLKKFFEN--EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHD 504 L +L+ F +H IGH++K + +Y +S+ +D +++++ + + D Sbjct: 379 LEFLQNAFSQILQHACIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD 438 Query: 505 IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKL 560 A KE LK + + +KI D + + +E N + +L Sbjct: 439 EA----------LKEYLK--EDLVSHEKIKDFKAKAEKLELLSMELNALKRLCEYFETGG 486 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 + E LL + ++ P + V+ ME G +ID LK + E L LE I DL G Sbjct: 487 LEEGLLTLARDIETPFVKVLMGMEFQGFKIDAPYLKCLEQEFKNELNVLERQILDLIGVD 546 Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 FNL+SPKQLG++L+ KL P K T ++L +I +P I ILE+R+L+K+ Sbjct: 547 FNLNSPKQLGEVLYEKLGLP-----KNKSHSTDEKNLLKI-LDKHPSIPLILEYRELNKL 600 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 +TY L + + ++HT + T TGRL+S PNLQNIP+++ G IR+ FI+ Sbjct: 601 FNTYTTPLL-RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIAS 659 Query: 741 PTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 + L+ DYSQIELR+LAH ++ L + F DIH + +FG E ++ + R Sbjct: 660 SKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRS 716 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 AK+INF ++YG+ +L+ L IP SEA YI+ YF RFP I +Y+ + + + Sbjct: 717 IAKSINFGLVYGMGSKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKA 776 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK 919 T+ GR +D N ++ R +NA QGSA+D+ + M+ V + +++ + + Sbjct: 777 FTLLGRYRVFD-FNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVR 834 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +LLQ+HDEL+FE+ E+ Q I + P LRVPL+ + V+N W E Sbjct: 835 LLLQVHDELIFEIEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFVANRWDE 886 Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/254 (34%), Positives = 131/254 (51%), Gaps = 17/254 (6%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKTKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +EI GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEISGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E ++ ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLVKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN GI GIG K A LLQ+ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGIKGIGSKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVML 249 E+A LS++L L Sbjct: 237 DKESAFLSKELATL 250 >gi|218508767|ref|ZP_03506645.1| DNA polymerase I [Rhizobium etli Brasil 5] Length = 201 Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 118/184 (64%), Positives = 143/184 (77%) Query: 686 DSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745 D+LP +++ T+RVHT YSLAST TGRL+S EPNLQNIP++T G+KIR AFIS P KL Sbjct: 2 DALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKL 61 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 ISADYSQIELR+LAH+A+I L + FE+ +DIH M A+E+FGV +E + ++RR AK IN Sbjct: 62 ISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAIN 121 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 F IIYGIS F LA QL I RSEA DYIK+YF RFPGI +Y+E K R GYVETIFGR Sbjct: 122 FGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGR 181 Query: 866 RIHY 869 RI+Y Sbjct: 182 RINY 185 >gi|297380674|gb|ADI35561.1| DNA polymerase I [Helicobacter pylori v225d] Length = 827 Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 163/522 (31%), Positives = 277/522 (53%), Gaps = 31/522 (5%) Query: 460 EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIA---SIAQKWL 513 +H IGH++K + +Y +S+ +D +++++ + + D + ++W+ Sbjct: 327 QHACIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEEWI 386 Query: 514 SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLD 573 + E +K K+ ++K+ ++ +A++ +L + E LL + ++ Sbjct: 387 PH---EKIKDFKTKSKVEKLEQLDMELNALK------RLCEYFEKGGLEEGLLALAREVE 437 Query: 574 KPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDIL 633 P + V+ ME G +ID K++ E L LE I DL G FNL+SPKQL +IL Sbjct: 438 TPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEIL 497 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 + KL+ P K+++ K+ + L++ +P I ILE+R+L+K+ +TY L + Sbjct: 498 YEKLELPQN-KSRSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RLK 550 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQ 752 + ++HT + T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQ Sbjct: 551 DKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQ 610 Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELR+LAH ++ L F DIH + +FG E ++ + R AK+INF ++YG+ Sbjct: 611 IELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGM 667 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 +L+ L IP +EA YI+ YF RFP I +Y+ + K + + T+ GR +D Sbjct: 668 GSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD-F 726 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 I+ R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ Sbjct: 727 TGANDRIKGDYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEI 785 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E+ Q I + P LRVPL+ + V+N W E Sbjct: 786 EEKNAPELQQEIQRILNNEVYP---LRVPLETSAFVANRWNE 824 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 114/238 (47%), Gaps = 14/238 (5%) Query: 71 TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEK 130 T R E +YK NR P+ +L Q+P+ Q G +E+ GFEADD+IA+ +A Sbjct: 14 TKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEADDVIAS---LATL 70 Query: 131 EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSI 190 + I S DKD QL+S L+D E + ++K+GI P + Q + GDS Sbjct: 71 SPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQFTDYQGIVGDSS 128 Query: 191 DNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILEYAETARLSRKLV 247 DN G+ GIG K A LLQ G+LE I N A + K + +++ E+A LS++L Sbjct: 129 DNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDKESAFLSKELA 188 Query: 248 MLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPVVLD 305 L ++ C P LK + K ++T D + + P++LD Sbjct: 189 TLERGC-----IKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLENSPT-PLILD 240 >gi|254779982|ref|YP_003058089.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed)) [Helicobacter pylori B38] gi|254001895|emb|CAX30145.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed)) [Helicobacter pylori B38] Length = 889 Score = 247 bits (630), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 249/463 (53%), Gaps = 22/463 (4%) Query: 519 EILKS--RKSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERL 572 E+LK ++ IP +KI D + + +E N + +L + E LL + + + Sbjct: 439 EVLKEYLKEELIPHEKIKDFKTKAEKLELLSVELNALKRLCEYFEKGGLEEGLLALAKEI 498 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 + P + V+ ME G +ID K++ E L LE I DL G FNL+SPKQL ++ Sbjct: 499 ETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEV 558 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 L+ KL+ P K T ++L +I +P I ILE+R+L+K+ +TY L + Sbjct: 559 LYEKLELP-----KNKSHSTDEKNLLKI-LDKHPSIALILEYRELNKLFNTYTTPLL-RL 611 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYS 751 + ++HT + T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYS Sbjct: 612 KDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYS 671 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELR+LAH ++ L + F DIH + +FG ++ K + R AK+INF ++YG Sbjct: 672 QIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGDLAK---EKRSIAKSINFGLVYG 728 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 + +L+ L I +EA YI+ YF RFP I +Y+ + K + + T+ GR +D Sbjct: 729 MGSKKLSETLNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD- 787 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 N I+ R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE Sbjct: 788 FNGVNDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFE 846 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + E+ Q I + P LRVPL+ + V+N W E Sbjct: 847 IEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFVANRWNE 886 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 17/255 (6%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 +E L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 REGTLALIDTFAYLFRSYYMSAKNKPLTNVK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVNGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIVLFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ+ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVMLR 250 +A LS++L L+ Sbjct: 237 DKGSAFLSKELATLQ 251 >gi|77920454|ref|YP_358269.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] gi|77546537|gb|ABA90099.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] Length = 480 Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 131/285 (45%), Positives = 176/285 (61%), Gaps = 6/285 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L+L+DGSS+IYRAFY ++ DG+P NA+ GF ML LLQ E + Sbjct: 1 MNPSPQLYLLDGSSYIYRAFYGIRDVA-TADGMPTNAVFGFTRMLLNLLQ----EHSPDY 55 Query: 61 FAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 AV+FD P TFR EIY +YKA+R +P+ L PQ+P +R QA IPA+E GFEADD Sbjct: 56 LAVVFDRPREETFRREIYSEYKAHRDAMPDELAPQIPYIRQILQALNIPALEAPGFEADD 115 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +IAT +G VT+++ DKDLMQ+V L DT+K+ + + V +++G+PPE + Sbjct: 116 VIATLGRRHAADGLQVTVVTGDKDLMQIVGDRIELLDTMKDTRSGAQQVFERFGVPPELV 175 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L GD+ DNIPG+PG+G KTA+ L+Q +G+LE +L S + KKRR N+ YAE Sbjct: 176 ADVLGLAGDTSDNIPGVPGVGEKTASELVQRFGSLEGVLKWTSLVNGKKRRSNLETYAEQ 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 ARLS+ L LR DVP+ I L L N LI L+ LEF L Sbjct: 236 ARLSKTLATLRDDVPLEISLADLQRRKPNLAELIPLLRELEFEAL 280 >gi|261840144|gb|ACX99909.1| DNA polymerase I (polA) [Helicobacter pylori 52] Length = 889 Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 169/527 (32%), Positives = 274/527 (51%), Gaps = 41/527 (7%) Query: 460 EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516 +H IGH++K + +Y +S+ +D +++++ + + D Sbjct: 389 QHACIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD------------ 436 Query: 517 RKEILKS--RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK------LLHV 568 E+LK ++ IP +KI D + + A + + ++L L R EK LL + Sbjct: 437 --EVLKEYLKEEWIPHEKIKDFKTKSKAGKLEQLDMELNALKRLCEYFEKGGLEEGLLAL 494 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 ++ P + V+ ME G +ID K++ E L LE I DL G FNL+SPKQ Sbjct: 495 AREVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKHELHVLERQILDLIGVDFNLNSPKQ 554 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 L +IL+ KL+ P K+ + K+ + L++ +P I ILE+R+L+K+ +TY L Sbjct: 555 LSEILYEKLELPKN-KSHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPL 608 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LIS 747 + + ++HT + T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ Sbjct: 609 L-RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLG 667 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 DYSQIELR+LAH ++ L F DIH + +FG E ++ + R AK+INF Sbjct: 668 VDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFG 724 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 ++YG+ +L+ L IP SEA YI+ YF RFP I +Y+ + K + + T+ GR Sbjct: 725 LVYGMGSKKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYR 784 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 +D I+ R +NA QGSA+D+ + M+ V + +++ L ++LLQ+HDE Sbjct: 785 VFD-FTGVNDHIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPL-VRLLLQVHDE 842 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+FE+ E+ Q I + P LRVPL+ + ++ W E Sbjct: 843 LIFEIEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFMAKRWNE 886 Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 94/313 (30%), Positives = 145/313 (46%), Gaps = 27/313 (8%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ + Sbjct: 5 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKDKKN---M 59 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 60 PFIVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVSGFEAD 119 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 120 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 174 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 175 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 234 Query: 236 YAETARLSRKLVMLRTDV-------PITIPLEHLIL---EDCNGPRLISFLKALEFTKLI 285 +A LS++L L P E+ +L ++ IS L+ LE + LI Sbjct: 235 DKASAFLSKELATLERGCIKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLENSPLI 294 Query: 286 NRVATTYDCDAAN 298 A T D A+ Sbjct: 295 VENAPTLDSAPAS 307 >gi|15612428|ref|NP_224081.1| DNA polymerase I [Helicobacter pylori J99] gi|9789748|sp|Q9ZJE9|DPO1_HELPJ RecName: Full=DNA polymerase I; Short=POL I gi|4155975|gb|AAD06938.1| DNA POLYMERASE I [Helicobacter pylori J99] Length = 897 Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 158/465 (33%), Positives = 249/465 (53%), Gaps = 24/465 (5%) Query: 519 EILKS--RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK------LLHVYE 570 E+LK ++ IP +KI D + + A ++ + ++L L R EK LL + Sbjct: 445 EVLKEYLKEDLIPHEKIKDFKTKSKAEKSELLSMELNALKRLCEYFEKGGLEEDLLTLAR 504 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 ++ P + V+ ME G +ID K++ E L LE I DL G FNL+SPKQLG Sbjct: 505 DIETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELNVLERQILDLIGVDFNLNSPKQLG 564 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ++L+ KL P K T ++L +I +P I ILE+R+L+K+ +TY L Sbjct: 565 EVLYDKLGLP-----KNKSHSTDEKNLLKI-LDKHPSIPLILEYRELNKLFNTYTTPLL- 617 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISAD 749 + + ++HT + T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ D Sbjct: 618 RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVD 677 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAH ++ L + F DIH + +FG E ++ + R AK+INF ++ Sbjct: 678 YSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLV 734 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YG+ +L+ L IP SEA YI+ YF RFP I +Y+ + + + T+ GR + Sbjct: 735 YGMGSKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVF 794 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 D ++ R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+ Sbjct: 795 D-FTGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELI 852 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 FE+ E+ Q I + P LRVPL+ + ++ W E Sbjct: 853 FEIEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFIAKRWNE 894 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 17/254 (6%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVGGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVML 249 +A LS++L L Sbjct: 237 DKGSAFLSKELATL 250 >gi|298735561|ref|YP_003728082.1| DNA polymerase I [Helicobacter pylori B8] gi|298354746|emb|CBI65618.1| DNA polymerase I [Helicobacter pylori B8] Length = 893 Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 157/465 (33%), Positives = 247/465 (53%), Gaps = 24/465 (5%) Query: 519 EILKS--RKSSIPIDKISDSQVQEHAIE------NSNVILQLWLLLRPKLIVEKLLHVYE 570 E+LK ++ IP +KI D + + A + N + +L + E LL + Sbjct: 441 EVLKEYLKEDLIPHEKIKDFKTKSKAEKLELLSVELNALKRLCEYFEKGGLEEGLLALAR 500 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 ++ P + V+ ME G +ID K++ E L LE I DL G FNL+SPKQLG Sbjct: 501 GVETPFMKVLMGMEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLIGVDFNLNSPKQLG 560 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 ++L+ KL P K T ++L +I +P I ILE+R+L+K+ +TY L Sbjct: 561 EVLYEKLGLP-----KNKSHSTDEKNLLKI-LDKHPSIALILEYRELNKLFNTYTTPLL- 613 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISAD 749 + + ++HT + T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ D Sbjct: 614 RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVD 673 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAH ++ L + F DIH + +FG E ++ + R AK+INF ++ Sbjct: 674 YSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLV 730 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YG+ +L+ L IP +EA YI+ YF RFP I +Y+ K + + T+ GR + Sbjct: 731 YGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMKEEILKTSKAFTLLGRYRVF 790 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 D N ++ R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+ Sbjct: 791 D-FNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELI 848 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 FE+ E+ Q I + P LRVPL+ + ++ W E Sbjct: 849 FEIEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFIAKRWNE 890 Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 128/254 (50%), Gaps = 17/254 (6%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVML 249 +A LS++L L Sbjct: 237 DKGSAFLSKELATL 250 >gi|317013238|gb|ADU83846.1| DNA polymerase I (polA) [Helicobacter pylori Lithuania75] Length = 893 Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 158/465 (33%), Positives = 248/465 (53%), Gaps = 24/465 (5%) Query: 519 EILKS--RKSSIPIDKISDSQVQ------EHAIENSNVILQLWLLLRPKLIVEKLLHVYE 570 E+LK ++ IP +KI D +++ E N + +L + E LL + + Sbjct: 441 EVLKEYLKEEWIPHEKIKDFKIKSKVEKLEQLDMELNALKRLCEYFEKGGLEENLLSLAK 500 Query: 571 RLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLG 630 ++ P + V+ ME G +ID K++ E L LE I +L G FNL+SPKQLG Sbjct: 501 EVETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLG 560 Query: 631 DILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 +IL+ KLK P K T ++L +I +P I ILE+R+L+K+ +TY L Sbjct: 561 EILYEKLKLP-----KNKSHSTDEKNLLKI-LDKHPSIPLILEYRELNKLFNTYTTPLL- 613 Query: 691 HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISAD 749 + + ++HT + T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ D Sbjct: 614 RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVD 673 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAH ++ L + F DIH + +FG ++ K + R AK+INF ++ Sbjct: 674 YSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGDLAK---EKRSIAKSINFGLV 730 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHY 869 YG+ +L+ L I +EA YI+ YF RFP I +Y+ + K + + T+ GR + Sbjct: 731 YGMGSKKLSETLNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVF 790 Query: 870 DEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELV 929 D I+ R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+ Sbjct: 791 D-FTGANDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELI 848 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 FE+ E+ Q I + P LRVPL+ + V+ W E Sbjct: 849 FEIEEKNALELQQEIQRILNDEVYP---LRVPLETSAFVAKRWNE 890 Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 84/254 (33%), Positives = 127/254 (50%), Gaps = 17/254 (6%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFVCVEVNGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + ++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIH 236 Query: 236 YAETARLSRKLVML 249 +A LS++L L Sbjct: 237 DKASAFLSKELATL 250 >gi|309801255|ref|ZP_07695384.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] gi|308222144|gb|EFO78427.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] Length = 727 Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 199/757 (26%), Positives = 340/757 (44%), Gaps = 85/757 (11%) Query: 8 FLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 +VDG S +RAF+A P+ + G NA+ GF ML +++ + H AV FD Sbjct: 1 MVVDGHSLAFRAFFALPVENFSTSAGQATNAVWGFATMLSQVIDTEHPD----HLAVAFD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFRN + P YK R PE LL QLPL++ A G+ IE G+E DD+I T Sbjct: 57 VKGGTFRNMMLPQYKGTRDAAPEDLLSQLPLIQRMLSALGVTYIEQPGYEGDDVIGTLAT 116 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPT-TCLYDTVKEEKIDIEH-----VIKKWGIPPEKMV 180 + +K G+ ++S D+D QL++ T LY D++H V++K+ + PE+ Sbjct: 117 MGDKAGYRTLVLSGDRDAFQLINDNITVLYP--GHHFKDLKHMTSDAVVEKYHVTPEQYP 174 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR---RENILEYA 237 L AL G++ DNIPG+PG+G AA + +YG L+ I+ +A I KK RENI Sbjct: 175 DLAALRGETADNIPGVPGVGDGFAAKWINQYGGLDQIIEHADEITGKKGEALRENI---- 230 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT-KLINRVATTYDCDA 296 E +L+R + L D+ + + L+ L + RL LEF + NRV T++ Sbjct: 231 EQVKLNRSVNALVRDLELDVTLDDLTFGTVDTARLNDLFSKLEFGIRTRNRVLKTFNA-- 288 Query: 297 ANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQ 356 T G+ ++ E +R + + + + +++ P L Sbjct: 289 -----------GTTTAGVTVQPESNRVVLPEVMTITHGDELRTWVDANMPPADEHLHGDD 337 Query: 357 KLSQYPINNDSYTKIVNTKDI-----QQWVQKLETIGSASFKIITDTMDAFHSKPIAIAI 411 + + I D+ + I NT WV + E + + M + K I Sbjct: 338 EDANPAI--DAGSLIGNTMTCTNAVNHSWVLQAEGVAKPGNASMASLMLMVNGKGAQI-- 393 Query: 412 STLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKY 471 + DD+ I + L+ + H + H K Sbjct: 394 ---EHVDDS----------------------------IANELQHMLDGYHRSMVVHGYKE 422 Query: 472 DKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLS-YTRKEILKSRKSSIP 529 + +L GI++ D L Y++ + + A +L + ++ ++ + ++ Sbjct: 423 QQHLLESVGITLPTPLFDTKLAGYLVHPDFHAESLEQAAGHFLDLHFEEQSSEATQGTLD 482 Query: 530 IDKI-SDSQVQEHAIENSNVILQLWLLLRPKLIVEKL-LHVYERLDKPMIDVVSQMEITG 587 +D + S Q ++ I+ + + L+ ++ + + ++ P+ V+ ME G Sbjct: 483 LDDMDGSSNTQADELQRHAAIVDMLANVLADLLDQRAQFGLLKSIELPVSKVLYGMEHAG 542 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT 647 Q+D L ++ + + + +E ++ +GE+ NL SPKQL ILF + KTK+ Sbjct: 543 AQVDMIRLTEMRDQFAADARQAQEIAWESAGERVNLQSPKQLQKILFEDMGLKPTKKTKS 602 Query: 648 GQWKTTAQDLEQI------NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 G + T A L+ + N N + +L R+ +K+K +L + N R R+HT Sbjct: 603 GSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLKQ-IVQTLIDATNPRDGRIHT 661 Query: 702 FYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 + TGRL+S++PNLQNIP + G++IR AF+ Sbjct: 662 TFEQTVAATGRLSSVDPNLQNIPNRNAAGREIRSAFV 698 >gi|217033899|ref|ZP_03439323.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10] gi|216943662|gb|EEC23107.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10] Length = 891 Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 169/539 (31%), Positives = 279/539 (51%), Gaps = 43/539 (7%) Query: 450 LSYLKKFFEN--EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHD 504 L +L+ F +H IGH++K + +Y +S+ +D +++++ + + D Sbjct: 379 LEFLQNAFSQILQHAQIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD 438 Query: 505 IASIAQKWLSYTRKEILKS--RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIV 562 E+LK ++ IP +KI D + + A + + +L L R Sbjct: 439 --------------EVLKEYLKEEWIPHEKIKDFKTKSKAEKLEQLDRELHALKRLCEYF 484 Query: 563 EK------LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 EK LL + ++ P + V+ ME G +ID K++ E L LE I +L Sbjct: 485 EKGGLEEGLLALAREVETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKNELHVLERQILEL 544 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 G FNL+SPKQL +IL+ KL+ P K+++ K+ + L++ +P I ILE+R+ Sbjct: 545 IGADFNLNSPKQLSEILYEKLELPQN-KSRSTDEKSLLKILDK-----HPSIALILEYRE 598 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 L+K+ +TY L + + ++HT + T TGRL+S PNLQNIP+++ G IR+ Sbjct: 599 LNKLFNTYTTPLL-RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKG 657 Query: 737 FISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 FI+ + L+ DYSQIELR+LAH ++ L F DIH + +FG E ++ Sbjct: 658 FIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAK 714 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 + R AK+INF ++YG+ +L+ L IP +EA YI+ YF RFP I +Y+ + K + + Sbjct: 715 EKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILK 774 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 T+ GR +D I+ R +NA QGSA+D+ + M+ V + +++ Sbjct: 775 TSKAFTLLGRYRVFD-FTGANDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP 833 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++LLQ+HDEL+FE+ E+ Q I + P LRVPL+ + ++ W E Sbjct: 834 -SVRLLLQVHDELIFEIEEKNALELQQEIQRILNDEVYP---LRVPLETSAFIAKRWNE 888 Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 23/310 (7%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ + Sbjct: 5 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKDKKN---M 59 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 60 PFIVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 119 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 120 DVIAS---LATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 174 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 175 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 234 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 E+A LS++L L ++ C P LK + K ++T D + Sbjct: 235 DKESAFLSKELATLERGC-----IKEFDFSSCAFPSENPLLKIKDELKEYGFISTLRDLE 289 Query: 296 AANIEPVVLD 305 + P++LD Sbjct: 290 NSPT-PLILD 298 >gi|222055465|ref|YP_002537827.1| Ribonuclease H [Geobacter sp. FRC-32] gi|221564754|gb|ACM20726.1| Ribonuclease H [Geobacter sp. FRC-32] Length = 480 Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 127/285 (44%), Positives = 179/285 (62%), Gaps = 6/285 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + L+L+DGSS+IYRA+Y L+ G+P NA+ GF ML LLQ +R + + Sbjct: 1 MNQPPQLYLLDGSSYIYRAYYGIRDLA-TSGGMPTNAVFGFTRMLLTLLQENRPD----Y 55 Query: 61 FAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 AV+FD P TFR EIYP YKA+R +PE L+PQ+P +R QA IPA+E GFEADD Sbjct: 56 VAVVFDPPREDTFRREIYPPYKAHRDAMPEDLVPQIPYIRKMVQALNIPALEAPGFEADD 115 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +IAT EG VT+++ DKDL+Q+V L DT+ E + E V+ ++G+ PE++ Sbjct: 116 VIATLARRFAAEGIQVTVVTGDKDLLQIVGEGIGLLDTMNERRSGTEEVLDRFGVTPEQV 175 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L GD+ DNIPG+PGIG KTAA L++++G+LE +L S + K RREN+ A+ Sbjct: 176 ADVLGLAGDTADNIPGVPGIGEKTAAKLVRQFGSLEGVLEWKSLVSGKARRENLHACADQ 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 ARLS++L +R DVP+ + L L + P L+ L+ L F L Sbjct: 236 ARLSKRLATVRYDVPLQVSLVDLQRRTPDLPVLVPLLRELGFAAL 280 >gi|116515191|ref|YP_802820.1| 5'-3' exonuclease domain-containing protein [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257045|gb|ABJ90727.1| 5'-3' exonuclease domain of DNA polymerase I [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 886 Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 144/356 (40%), Positives = 215/356 (60%), Gaps = 8/356 (2%) Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 FN++S KQL +ILF K P KTK G T L+++ + + K IL++R + KI Sbjct: 533 FNINSSKQLQNILFKKFNLPKIYKTKLGNISTNEIVLKKL-SKIHILPKIILQFRLIKKI 591 Query: 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISP 740 +TY +L IN +T R+HT Y+ +T TGRL+S PNLQNIPIKT +G+K+R AFI+ Sbjct: 592 INTYLRNLIKSINNKTNRIHTTYNQINTSTGRLSSKNPNLQNIPIKTKIGRKLRIAFITK 651 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 L++ADYS IELRI+AH +K L + + DIH A+ IF +EK+ R Sbjct: 652 KKWLLLTADYSHIELRIIAHYSKDKNLIKDLLKNKDIHISTASHIFNKPLEKIKKYHRNI 711 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 AKTINFSI+YGISPF L+ +L I ++ + I RYF ++ I +I+ T ++ GY++ Sbjct: 712 AKTINFSILYGISPFGLSKKLNISIKKSKNLIYRYFLKYNKIKRFIKNTYKTAKKRGYIK 771 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA--T 918 T+F R+++ INS ++N +R IN IQ +A+DI +++MI++H L K Sbjct: 772 TLFKRKLYIPNINSKNIYLKNSAKRFCINLMIQNTASDIIKKSMITLH-HLFKKKFPKDI 830 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 K+++QIHDEL+FE+ E++ +I ME L +PL + K+ NW+E Sbjct: 831 KIIMQIHDELIFEIKEKKKDKIIDVIKKIMENNT----KLIIPLYITTKIGKNWKE 882 Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 116/218 (53%), Gaps = 5/218 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + ++DG +Y+ +++ L K +G + G+ +L KL++ + I ++FD Sbjct: 5 IIIIDGHYCLYQNYFSFIKLKNK-NGSSTGVLYGYIRLLNKLIEKFNPKKII----IVFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 P T R++++ YK NR +P L Q+ ++ +A I I I+ EADDII T + Sbjct: 60 TPKKTNRHKLFTKYKKNRISMPNELKKQINPLKKIIKALNITIISIKKIEADDIIGTISR 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 I K+ + + I S DKD+ QL+ + ++ ++ + KK+G+ P+ + L Sbjct: 120 IFTKKKYYIFIYSADKDMTQLIKKNVFVIPGSIKKVLNKNDIFKKYGVYPKSIADFLCLV 179 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI 224 GD DNI G+ GIG KTA +LLQ + +++ I N +I Sbjct: 180 GDFSDNIRGVLGIGKKTAKILLQSFSSIKKIYKNIEKI 217 >gi|207092962|ref|ZP_03240749.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_AG0C1] Length = 474 Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 246/463 (53%), Gaps = 22/463 (4%) Query: 519 EILKS--RKSSIPIDKISDSQVQEHAIE----NSNVILQLWLLLRPKLIVEKLLHVYERL 572 E+LK ++ IP +KI D + + +E N + +L + E LL + + Sbjct: 24 EVLKEYLKEELIPHEKIKDFKAKAEKLELLSVELNALKRLCEYFEKGGLEENLLSLAREV 83 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI 632 + P + V+ ME G +ID K + E L LE I DL G FNL+SPKQL ++ Sbjct: 84 ETPFVKVLMGMEFQGFKIDAPYFKCLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEV 143 Query: 633 LFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHI 692 L+ KL P K+ + K+ + L++ +P I ILE+R+L+K+ +TY L + Sbjct: 144 LYEKLGLPKN-KSHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPLL-RL 196 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYS 751 + ++HT + T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYS Sbjct: 197 KDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYS 256 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 QIELR+LAH ++ L + F DIH + +FG ++ K + R AK+INF ++YG Sbjct: 257 QIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGDLAK---EKRSIAKSINFGLVYG 313 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 + +L+ L I +EA YI+ YF RFP I +Y+ + K + + T+ GR +D Sbjct: 314 MGSKKLSETLNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFD- 372 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 I+ R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE Sbjct: 373 FTGANDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFE 431 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + E+ Q I + P LRVPL+ + V+ W E Sbjct: 432 IEEKNALELQQEIQRILNDEVYP---LRVPLETSAFVAKRWNE 471 >gi|109948187|ref|YP_665415.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba] gi|109715408|emb|CAK00416.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba] Length = 887 Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 170/539 (31%), Positives = 275/539 (51%), Gaps = 43/539 (7%) Query: 450 LSYLKKFFEN--EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHD 504 L +L+ F +H IGH++K + +Y +S+ +D +++++ + + D Sbjct: 375 LEFLQNAFSKMLQHACIIGHDLKPLLSFLKAKYQVSLENIHIQDTQILAFLKNPEKVGFD 434 Query: 505 IASIAQKWLSYTRKEILKS--RKSSIPIDKISDSQVQEHA--IENSNVIL----QLWLLL 556 E+LK ++ I +KI D + + A +E NV L +L Sbjct: 435 --------------EVLKEYLKEDLILHEKIKDFKTKSKAEKLERLNVELNALKRLCEYF 480 Query: 557 RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 + + E LL + + ++ P + V+ ME G +ID K++ E L LE I DL Sbjct: 481 EKEGLEEDLLSLAKEIEMPFMKVLMNMEFQGFKIDAPYFKRLEQEFKDELKVLERQILDL 540 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 GE FNL+SPKQL +L+ KL P K T ++L +I +P I ILE+R+ Sbjct: 541 IGEDFNLNSPKQLSGVLYEKLNLP-----KNKSHSTDEKNLLKI-MDKHPSIPLILEYRE 594 Query: 677 LSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRA 736 L+K+ +TY L + + ++HT + T TGRL+S PNLQNIP+++ G IR+ Sbjct: 595 LNKLSNTYITPLL-RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSSKGLLIRKG 653 Query: 737 FISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 FIS + L+ DYSQIELR+LAH ++ L + F DIH + +FG N K Sbjct: 654 FISSSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSRALFGENSAK--- 710 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 + R AK+INF ++YG+ +L+ L IP +EA YI+ YF RFP I +Y+ + + + Sbjct: 711 EKRSIAKSINFGLVYGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNNMQEEILK 770 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 T+ GR +D N ++ R +NA QGSA+D+ + M+ V + ++ Sbjct: 771 TSKAFTLLGRYRVFD-FNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNDS 829 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + ++LLQ+HDEL+FE+ E+ Q I + LRVPL+ + ++ W + Sbjct: 830 -SVRLLLQVHDELIFEIEEKNALELQQEIQRILNNEVYA---LRVPLETSAFIAKRWND 884 Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/258 (32%), Positives = 131/258 (50%), Gaps = 17/258 (6%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKTKPLTNDK--GFPTGLLMGLVGMIKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R+E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRSEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVSGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL++ L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTRIYSKDKDFNQLLNDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ+ G+LE I N A + K + ++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQQLGSLEKIYNNLDLAKNLLSPKMYQALIH 236 Query: 236 YAETARLSRKLVMLRTDV 253 E+A LS++L L + Sbjct: 237 DKESAFLSKELATLEREC 254 >gi|219110613|ref|XP_002177058.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411593|gb|EEC51521.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 389 Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 125/296 (42%), Positives = 181/296 (61%), Gaps = 14/296 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L LVD S++I+RA+Y+ P + R DG+P A+ GFC+M+ +L+ N E ++ Sbjct: 59 DPLILVDASAYIFRAYYSMPPIHR-SDGMPTGAVMGFCSMIMRLILNRIVEGERPRLVLV 117 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ +YP+YK NRP P L+PQ LVR A +A+GIP IE FEADD+IAT Sbjct: 118 FDAKGKTFRHSLYPEYKGNRPDAPVDLVPQFALVREAAKAYGIPQIEAATFEADDVIATL 177 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-----PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +A +EG I+S DKDL QL++ P+ + D + +I + V++KWG P + Sbjct: 178 ATMAIEEGIDTNILSGDKDLWQLITDREEIPSVHMIDPMTMGRITYDEVVEKWGCGPRLL 237 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + AL GDS DN+PG+PGIG K AALL++E+G+LE +L N +KQ+ RRE + + Sbjct: 238 GDILALAGDSADNVPGVPGIGPKIAALLIEEFGSLEKLLANVDTVKQRARREKLKANEQQ 297 Query: 240 ARLSRKLVMLRTDVP---ITIP-----LEHLILEDCNGPRLISFLKALEFTKLINR 287 ARLSR LV LR DVP +T P + L + + + R+++F A+ F L R Sbjct: 298 ARLSRVLVDLRRDVPMDRMTFPQGIAKVSDLQMAEFDSNRILAFYDAMGFRDLKRR 353 >gi|121730180|ref|ZP_01682572.1| DNA polymerase I [Vibrio cholerae V52] gi|121628071|gb|EAX60613.1| DNA polymerase I [Vibrio cholerae V52] Length = 481 Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 163/520 (31%), Positives = 260/520 (50%), Gaps = 58/520 (11%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L L+DGSS++YRAF+A P + + +P NAI G NM+ ++ ++ + AV Sbjct: 6 DNPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAIYGVVNMIRSMM----RQFASDRMAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR+E+Y YKA+RP +P+ L Q+ + +A G+P + I+G EADD+I T Sbjct: 61 IFDAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ Sbjct: 121 LARQASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREGVIEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G LE + N +I K + + E Sbjct: 181 ALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQKLEENR 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 A+LS +L ++ DV + + L+ + + L+S L F + Sbjct: 241 GNAKLSYQLATIKCDVELEESPQTLLKQTPDRDALMSLYGKLAFKSWLTE---------- 290 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 +LD T GI + D KT SS++ T+ ++ P+ Sbjct: 291 -----LLDGGT----GI-----VTADEQTKT---SSVTVSTAATHAAAIPES-------- 325 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 I+ Y I+N +D Q W++KL+ +F TD +D + + ++ + + + Sbjct: 326 -PAAHIDRSQYQTILNEQDFQLWLEKLKQAELFAFDTETDNLDYMVANLVGMSFA-VAEG 383 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 + V ++D +D +++ LK E+E K+G N+KYD V+ Sbjct: 384 EAAYLPVAHDYLDAPQQLERDW---------VIAQLKPLLEDESKAKVGQNLKYDASVMA 434 Query: 478 RYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516 RYG+ +RG D ML SYV +S HD+ S+A ++L ++ Sbjct: 435 RYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHS 474 >gi|317010156|gb|ADU80736.1| DNA polymerase I [Helicobacter pylori India7] Length = 885 Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 164/527 (31%), Positives = 273/527 (51%), Gaps = 41/527 (7%) Query: 460 EHFLKIGHNIK-YDKLVLHRYGISMRGF--EDIMLMSYVLDSGRSSHDIASIAQKWLSYT 516 +H IGH++K + +Y +S+ +D +++++ + + D Sbjct: 385 QHASIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFD------------ 432 Query: 517 RKEILKS--RKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK------LLHV 568 E+LK ++ IP +KI D + A + + ++L L R EK LL + Sbjct: 433 --EVLKEYLKEELIPHEKIKDFKTTSKAEKLERLDMELNALKRLCAYFEKGGLEEGLLAL 490 Query: 569 YERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 ++ P + V+ ME G +ID K++ E L LE I +L G FNL+SPKQ Sbjct: 491 AREVETPFVKVLMGMEFQGFKIDAPYFKRLEQEFKDELKVLERQILELIGVDFNLNSPKQ 550 Query: 629 LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL 688 L ++L+ KL+ P K+ + K+ + L++ +P I ILE+R+L+K+ +TY L Sbjct: 551 LSEVLYEKLELPKN-KSHSTDEKSLLKILDK-----HPSIALILEYRELNKLFNTYTTPL 604 Query: 689 PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LIS 747 + + ++HT + T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ Sbjct: 605 L-RLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLG 663 Query: 748 ADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFS 807 DYSQIELR+LAH ++ L + F DIH + +FG + K + R AK+INF Sbjct: 664 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGELAK---EKRSIAKSINFG 720 Query: 808 IIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 ++YG+ +L+ L IP +EA YI+ YF RFP I +Y+ + K + + T+ GR Sbjct: 721 LVYGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYR 780 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 +D ++ R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDE Sbjct: 781 VFD-FTGANDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDE 838 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+FE+ E+ Q I + P LRVPL+ + ++ W E Sbjct: 839 LIFEIEEKNAPELQQEIQRILNDEVYP---LRVPLETSAFMAKRWNE 882 Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 129/254 (50%), Gaps = 17/254 (6%) Query: 3 KENHLFLVDGSSFIYRAFYAT----PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 KE L L+D ++++R++Y + PL + K G P + G M+ K ++ RK Sbjct: 7 KEGTLALIDTFAYLFRSYYMSAKNKPLTNDK--GFPTGLLTGLVGMVKKFYKD-RKNMPF 63 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 FA+ + T R E +YK NR P+ +L Q+P+ Q G +E+ GFEAD Sbjct: 64 IVFAL--ESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVNGFEAD 121 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 D+IA+ +A + I S DKD QL+S L+D E + ++K+GI P + Sbjct: 122 DVIAS---LATLSPYKTHIYSKDKDFNQLLSDKIALFDGKTE--FLAKDCVEKYGILPSQ 176 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILIN---ASRIKQKKRRENILE 235 Q + GDS DN G+ GIG K A LLQ G+LE I N A + K + +++ Sbjct: 177 FTDYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQ 236 Query: 236 YAETARLSRKLVML 249 E+A LS++L L Sbjct: 237 DKESAFLSKELATL 250 >gi|154247529|ref|YP_001418487.1| 5'-3' exonuclease [Xanthobacter autotrophicus Py2] gi|154161614|gb|ABS68830.1| 5'-3' exonuclease [Xanthobacter autotrophicus Py2] Length = 299 Score = 240 bits (613), Expect = 7e-61, Method: Composition-based stats. Identities = 125/291 (42%), Positives = 182/291 (62%), Gaps = 3/291 (1%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 +Q ++H+ L+DGSSF++RAFY P + R+ DG PV AI+GFC M+W LL + ASH Sbjct: 6 IQADDHVLLIDGSSFLWRAFYGAPAVIRRSDGHPVGAISGFCWMMWTLLHETSAVPPASH 65 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AVIFD +R++I YKANR + P+ + Q VR A A IP++E+ G+EADD+ Sbjct: 66 RAVIFDAGRRNWRHDILASYKANRNEPPDDIKRQFKPVRAACAALPIPSVELAGYEADDL 125 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTT--CLYDTVKEEKIDIEHVIKKWGIPPEK 178 IATYT A G VTI + DKDL QLV T CLYD K + V++++G+PP Sbjct: 126 IATYTRKAVASGAGVTIATGDKDLAQLVDDRTGVCLYDASKGRTMREAEVLERFGVPPAG 185 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ L AL GD+ DNIPG+PGIG K AA L+ +G+LE+I I A +++K+ + ++A Sbjct: 186 VLDLLALAGDTTDNIPGVPGIGAKRAAELVSRHGSLEDI-IAAGTARKEKQAAKVADHAA 244 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA 289 +AR+SR L L T VP+ + L HL ++ + +FL+ + L R++ Sbjct: 245 SARISRSLATLDTAVPVPLALAHLGAQEPDMAAFAAFLEEWDLGGLAERLS 295 >gi|148263291|ref|YP_001229997.1| ribonuclease H [Geobacter uraniireducens Rf4] gi|146396791|gb|ABQ25424.1| Ribonuclease H [Geobacter uraniireducens Rf4] Length = 484 Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 126/285 (44%), Positives = 179/285 (62%), Gaps = 6/285 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L+++DGSS+IYRA+Y L+ G+P NA+ GF ML LLQ +R + + Sbjct: 1 MNAAPQLYVLDGSSYIYRAYYGVRDLA-TSGGMPTNAVFGFTRMLLGLLQENRPD----Y 55 Query: 61 FAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 AV+ D P TFR E+YP YKA+R +P L+PQLP +R QA IPA+E GFEADD Sbjct: 56 LAVVLDPPREETFRRELYPAYKAHRDAMPADLVPQLPYIRQILQALNIPALEAPGFEADD 115 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +IAT EG VT+++ DKDL+Q+V L DT+K+ + + V+ ++G+PPE + Sbjct: 116 VIATLARRYAAEGIEVTVVTGDKDLLQIVGDGINLLDTMKDLRSGPQEVLDRFGVPPELV 175 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L GD+ DNIPG+PGIG KTAA L++ +G+LE +L S + K+RREN+ +A+ Sbjct: 176 PDVLGLAGDTSDNIPGVPGIGEKTAAELVRRFGSLEGVLQWKSLVNGKQRRENLHAHADQ 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 ARLS+ L +R DVP+ + L L N P L+ L+ LEF+ L Sbjct: 236 ARLSKTLATVRYDVPLDLSLAELERRTPNLPELMPLLRELEFSAL 280 >gi|224003183|ref|XP_002291263.1| DNA polymerase [Thalassiosira pseudonana CCMP1335] gi|220973039|gb|EED91370.1| DNA polymerase [Thalassiosira pseudonana CCMP1335] Length = 500 Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 156/456 (34%), Positives = 256/456 (56%), Gaps = 31/456 (6%) Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 AI N + L+ L+ +LI LL E ++ P+ +++ ME G+ + LK+ A+ Sbjct: 45 AINNLAFLNALYPLMNRQLIDRDLLPSLENIEAPVQSILAAMECRGVAFYPNHLKRNEAQ 104 Query: 602 ISKNLLSLEENIYDLSGEK-FNLSSPKQLGDILFT--KLKFPSGAKTKTGQWKTTAQDLE 658 ++ + +LE ++ + F LSSP+Q+ + L+ K+K PSG KT ++T+++ Sbjct: 105 ANERIEALEAQARTITNDSSFLLSSPQQISNYLYDILKMKVPSGLVQKTKSQRSTSEETL 164 Query: 659 QI-----NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 Q N +PII ILE+R L+K+ +TY LP QR+H +S + TGRL Sbjct: 165 QALKAASNGSPHPIIDVILEFRTLNKLLTTYIKPLPTFC--LPQRIHPQWSECAVRTGRL 222 Query: 714 ASLEPNLQNIPIKTDLGQKIRRAFISPPTKK----LISADYSQIELRILAHIAKITPLYQ 769 + +PNLQ +P D G +RR+F+ P+KK L + DYSQ E+RILAH++ L Sbjct: 223 SCRQPNLQQVP--KDDGASVRRSFV--PSKKETMCLFACDYSQKEVRILAHMSGDKALIS 278 Query: 770 VFE--NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 +F+ ++DI++ +++ I +E ++ Q R K + +++YG+SP ++A +L I +S+ Sbjct: 279 LFQMDANVDIYKQMSSLIRNKPVESITAQERAQFKQVTLALLYGMSPNQVAKKLNITKSQ 338 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A + +F RF G+ ++E TK F R+N YV TI GRR + D I+S + + ER A Sbjct: 339 AIQMMNDFFRRFQGVKNWMEDTKEFARRNHYVVTIAGRRRYLDGIDSDDNGAKAQAERQA 398 Query: 888 INAPIQGSAADITRRAMISVHKSL----EDHKLAT-----KMLLQIHDELVFEVP--EEE 936 IN IQGSAAD+ + +MI++ ++L ED+ ++LLQIHDELV E+ E + Sbjct: 399 INTVIQGSAADLMKCSMINIAENLQRWQEDNSSNGTSSRPRILLQIHDELVLELNFVETD 458 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 I I S+ + C +L+VPL + +W Sbjct: 459 IRRLQAIATKSLTRDCEEYFHLKVPLLLTCSCGMSW 494 >gi|289178749|gb|ADC85995.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12] Length = 297 Score = 238 bits (608), Expect = 3e-60, Method: Composition-based stats. Identities = 121/300 (40%), Positives = 187/300 (62%), Gaps = 9/300 (3%) Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 +L +I T D+ IN R R+HT ++ TGRL+S++PNLQNIP + G+ IR Sbjct: 3 KLRQIVQTLMDA----INPRDGRIHTTFTQTVAATGRLSSVDPNLQNIPNRNATGRDIRS 58 Query: 736 AFISPPT-KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794 AF+ L+SADYSQ+ELRI+A ++ L + F++ D HR VA+ ++G+ +++V+ Sbjct: 59 AFVPGEGFADLLSADYSQVELRIMADLSGDEALIKAFKSGADFHRYVASMVYGIPVDEVT 118 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 P R H K +++ + YG+S + L+ QL IP EAA RYF F +H+Y+E + R Sbjct: 119 PDQRNHVKAMSYGLAYGLSTYGLSQQLGIPSKEAAALRSRYFQTFGKVHDYLESLVSNAR 178 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 GY +T+FGRR ++ + S R+ ER A+NAPIQG+AADI + AMI V ++L D Sbjct: 179 NTGYTQTMFGRRRYFPALTSANRVARDAAERGALNAPIQGTAADIMKIAMIRVDRALRDG 238 Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L ++++LQIHDELV E+ E ++++ +ME A +N+ VPL V+ V ++WQ+ Sbjct: 239 NLNSRIVLQIHDELVVELAPGEEKRVTELVRDAMEHA----VNIAVPLDVSTGVGSDWQQ 294 >gi|315452575|ref|YP_004072845.1| DNA polymerase I [Helicobacter felis ATCC 49179] gi|315131627|emb|CBY82255.1| DNA polymerase I [Helicobacter felis ATCC 49179] Length = 861 Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 168/527 (31%), Positives = 279/527 (52%), Gaps = 48/527 (9%) Query: 465 IGHNIKYDKLVLH---RYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI 520 +G+ IK +L L+ RY + + +ED+ L++++ +S S+ + + R Sbjct: 362 VGYQIK--ELFLYFKQRYQLDLPTHYEDVALLAWLHNS--------SLEPQMSALGRLFS 411 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 L+S SS P ++ +Q++ N+ +I + + + L + LL + L+ P++ ++ Sbjct: 412 LESF-SSKPHAPLNAAQMES----NTRLIARAYTHYKDTLSPD-LLQLARELEYPLLAIL 465 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 +M+ G +D + + E +++L +L+ I+ L+ N++S KQ L+ L Sbjct: 466 LEMQAQGFSLDLAYFQTLKQEFAQSLNTLQNQIHALAHTDINVNSTKQWAHFLYQDLGLQ 525 Query: 641 SGA--KTKTG---------QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689 + K KTG + T Q ++ +L +R+L K++STY + P Sbjct: 526 AKGVKKIKTGFSTDEASLKALQETYQGARVQGVEVATLLDALLGYRELFKLQSTYVE--P 583 Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISA 748 + ++HT + +T + RL+S PNLQNIPI+T LG+KI FI S P L+ A Sbjct: 584 LLTQNQHGKIHTIFYQHTTASSRLSSAHPNLQNIPIRTPLGKKIAHGFIPSAPDLLLLGA 643 Query: 749 DYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 DYSQIELR+LAH + T L Q F + DIH A +F P R AK+INF++ Sbjct: 644 DYSQIELRLLAHFSNDTHLIQAFLQNQDIHLNTALALFN------DPHKRHAAKSINFAL 697 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 IYG+ P RLA L+I + EA DYI RYF+ FP I +++++ K + Q G + T+ G + H Sbjct: 698 IYGMGPRRLADTLKISQQEAKDYIDRYFNAFPTIKDFLDQLKARILQEGKITTLLGHQRH 757 Query: 869 YDEINS-PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 +D N+ PK + R IN QGSA+D+ + AM+ +H + + KML+Q+HDE Sbjct: 758 FDFTNATPKLQAEYL--REGINTLFQGSASDLVKLAMLKIHAHIAKYP-RVKMLVQVHDE 814 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ EVP+ +++ + I ME P L+VPL+ + NW E Sbjct: 815 IILEVPKTQVSQIALEIKTIME-GIYP---LKVPLECHTSYGANWGE 857 Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 115/233 (49%), Gaps = 23/233 (9%) Query: 73 RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYI-AEKE 131 R + P YK+NR P L QLP++ +A G+ + + G+E+DD+IA+ ++ E E Sbjct: 68 RKTLCPTYKSNRTS-PPGLEEQLPIIFEWIEAMGLDSFSMPGYESDDVIASLCHVFPEAE 126 Query: 132 GFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSID 191 V I+S DKD QLVSP L D IE ++K+GI P + + Q L GDS D Sbjct: 127 ---VRILSVDKDFFQLVSPRVLLCDPSSNTLKGIEECLEKYGIYPHQFIEYQGLVGDSSD 183 Query: 192 NIPGIPGIGYKTAALLLQEYGNLENIL--INASRIKQKKR----RENILEYAETARLSRK 245 G+ G+G L+Q + LEN+ + + I K + +L E A LSR+ Sbjct: 184 GYKGVEGVGPIYGTKLIQAFSTLENLYYALETTSITNPKLPAKIQHALLRDKEQAFLSRR 243 Query: 246 LVMLRTDV---PITI---PLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 L L + + P T+ P E+ +L R+ L+ E L+ ++ TY Sbjct: 244 LAKLESGLFNHPPTLKPFPQENPLL------RIADALEHYEMFALLKQITPTY 290 >gi|254253595|ref|ZP_04946912.1| DNA polymerase A [Burkholderia dolosa AUO158] gi|124898240|gb|EAY70083.1| DNA polymerase A [Burkholderia dolosa AUO158] Length = 248 Score = 235 bits (600), Expect = 3e-59, Method: Composition-based stats. Identities = 116/250 (46%), Positives = 162/250 (64%), Gaps = 4/250 (1%) Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 ++T G++IR AFI+ P +++SADYSQIELRI+AHI+ L + F DIHR AAE Sbjct: 1 MRTAEGRRIREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAE 60 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 +FGV +V+ RR AK INF +IYG+S F LA+ L I R A YI RYF R+PG+ + Sbjct: 61 VFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYIDRYFTRYPGVAQ 120 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 Y+E T+ ++ GYVET+FGRR+ EIN R ERAAINAP+QG+AAD+ + +M Sbjct: 121 YMENTRASAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSM 180 Query: 905 ISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKV 964 I+V + L KLA++M++Q+HDELV EVP++E+ + + M L+VPL Sbjct: 181 IAVDQWLTRDKLASRMIMQVHDELVLEVPDDELPLVREKLPEMMCGVA----KLKVPLVA 236 Query: 965 NIKVSNNWQE 974 + NW+E Sbjct: 237 EVGAGANWEE 246 >gi|217031810|ref|ZP_03437313.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128] gi|216946462|gb|EEC25064.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128] Length = 383 Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 141/393 (35%), Positives = 216/393 (54%), Gaps = 16/393 (4%) Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSG 642 ME G +ID K++ E L LE I DL G FNL+SPKQLG++L+ KL P Sbjct: 3 MEFQGFKIDVPYFKRLEQEFKDELKVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLP-- 60 Query: 643 AKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 K T ++L +I +P I ILE+R+L+K+ +TY L + + ++HT Sbjct: 61 ---KNKSHSTDEKNLLKI-LDKHPSIALILEYRELNKLFNTYTTPLL-RLKDKDDKIHTT 115 Query: 703 YSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-LISADYSQIELRILAHI 761 + T TGRL+S PNLQNIP+++ G IR+ FI+ + L+ DYSQIELR+LAH Sbjct: 116 FIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHF 175 Query: 762 AKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQL 821 ++ L + F DIH + +FG E ++ + R AK+INF ++YG+ +L+ L Sbjct: 176 SQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFGLVYGMGSKKLSETL 232 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 IP +EA YI+ YF RFP I +Y+ K + + T+ GR +D N ++ Sbjct: 233 NIPLNEAKSYIEAYFKRFPSIKDYLNGMKEEILKTSKAFTLLGRYRVFD-FNGVNDYVKG 291 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 R +NA QGSA+D+ + M+ V + +++ + ++LLQ+HDEL+FE+ E+ Sbjct: 292 NYLREGVNAIFQGSASDLLKLGMLKVSERFKNNP-SVRLLLQVHDELIFEIEEKNAPELQ 350 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q I + P LRVPL+ + ++ W E Sbjct: 351 QEIQRILNDEVYP---LRVPLETSAFIAKRWNE 380 >gi|213022529|ref|ZP_03336976.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 478 Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 157/519 (30%), Positives = 250/519 (48%), Gaps = 63/519 (12%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQP----THAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+ L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + + E L ++ L+ K EF + T D +A Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFKKYEFKRW------TADVEAG 294 Query: 298 NIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQK 357 + KG + I S S+ + ++ E Sbjct: 295 ---------KWLQAKGAKPAAKPQETVVIDESP----SEPAAALSYE------------- 328 Query: 358 LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 +Y I++ ++ W++KL+ +F TD++D + + ++ + ++ Sbjct: 329 ---------NYVTILDDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFA-IEPG 378 Query: 418 DDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH 477 V ++D S+ + L LK E+E K+G N+KYD+ VL Sbjct: 379 VAAYVPVAHDYLDAPDQISR---------QRALELLKPLLEDEKVRKVGQNLKYDRGVLQ 429 Query: 478 RYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSY 515 YGI +RG D ML SY+L+S HD+ S++ +WL + Sbjct: 430 NYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKH 468 >gi|253699464|ref|YP_003020653.1| 5'-3' exonuclease [Geobacter sp. M21] gi|251774314|gb|ACT16895.1| 5'-3' exonuclease [Geobacter sp. M21] Length = 474 Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 129/290 (44%), Positives = 177/290 (61%), Gaps = 16/290 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFY-----ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ L+L+DGSS+IYRA+Y ATP G+P NA+ GF ML LLQ R E Sbjct: 1 MEISPRLYLLDGSSYIYRAYYGFRDIATP------GGMPANAVFGFTKMLLDLLQEHRPE 54 Query: 56 SIASHFAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +FAV+FD P TFR EIYP+YKA R PE L+ QLP +R QA IP +E Sbjct: 55 ----YFAVVFDPPRENTFRREIYPEYKAQRDAAPEDLVSQLPYIRKILQALNIPILETSR 110 Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGI 174 FEADD+IAT EG VT+++ DKDL+Q+V+ L DT+K ++ + V++++G+ Sbjct: 111 FEADDVIATLATRFAAEGTDVTVVTGDKDLLQIVTGRISLLDTMKGKRSGPQQVVERFGV 170 Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 PPE + + L GDS DNIPG+PGIG K AA L+Q++G+LE +L S + K RREN+ Sbjct: 171 PPELVADVLGLAGDSGDNIPGVPGIGEKIAAKLVQQFGSLEKVLEWRSLVNGKTRRENLK 230 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 +A+ A LS++L +R D P+ + L L N L+S L+ L F L Sbjct: 231 THAKQAILSKELATVRYDAPVDVSLAELQSRPANVADLVSLLRELGFAAL 280 >gi|197117169|ref|YP_002137596.1| ribonuclease H [Geobacter bemidjiensis Bem] gi|197086529|gb|ACH37800.1| ribonuclease H [Geobacter bemidjiensis Bem] Length = 474 Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 129/290 (44%), Positives = 176/290 (60%), Gaps = 16/290 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFY-----ATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ L+L+DGSS+IYRA+Y ATP G+P NAI GF ML LLQ R E Sbjct: 1 MEISPRLYLLDGSSYIYRAYYGFRDIATP------GGMPANAIFGFTKMLLDLLQEHRPE 54 Query: 56 SIASHFAVIFDYPAV-TFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQG 114 +FAV+FD P TFR E+YPDYKA R +PE L+ QLP +R Q IP +E Sbjct: 55 ----YFAVVFDPPRENTFRREMYPDYKAQRDAMPEDLVSQLPYLRKILQTLNIPILEASR 110 Query: 115 FEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGI 174 FEADD+IAT EG VT+++ DKDL+Q+V+ L DT+K ++ + V++++G+ Sbjct: 111 FEADDVIATLAARFAAEGADVTVVTGDKDLLQIVTDRIALLDTMKGKRSGPQQVVERFGV 170 Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 PPE + + L GDS DNIPG+PGIG K AA L+Q++G+LE +L S + K RREN+ Sbjct: 171 PPELVADVLGLAGDSGDNIPGVPGIGEKIAAKLVQQFGSLEKVLEWRSLVNGKSRRENLK 230 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 +AE A LS+ L +R D P+ + L L + L+S L+ L F L Sbjct: 231 THAEQAILSKALATVRYDAPVDVSLAELQSRPASVQELVSLLRELGFAAL 280 >gi|255600737|ref|XP_002537523.1| DNA polymerase I, putative [Ricinus communis] gi|223516044|gb|EEF24860.1| DNA polymerase I, putative [Ricinus communis] Length = 176 Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 108/176 (61%), Positives = 136/176 (77%), Gaps = 3/176 (1%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL ++R S+ Sbjct: 1 MKKGDHLFLVDGSGFIFRAFHALPPLTRKSDGLPVGAVSGFCNMLWKLLTSARDTSVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +HFAVIFDY + TFR +I+P+YKANR PE L+PQ L+R AT+AF +P IE GFEA Sbjct: 61 PTHFAVIFDYSSKTFRKDIFPEYKANRSAPPEELIPQFGLIREATRAFNLPCIETDGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWG 173 DDIIATY AE G VTIIS+DKDLMQLV+P +YD++K+++I I VI+KWG Sbjct: 121 DDIIATYARQAEAAGADVTIISSDKDLMQLVTPMVHMYDSMKDKQIGIPDVIEKWG 176 >gi|261878885|ref|ZP_06005312.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] gi|270334465|gb|EFA45251.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] Length = 261 Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 115/263 (43%), Positives = 162/263 (61%), Gaps = 4/263 (1%) Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF 771 RL+S +PNLQNIP++ D G++IR+ FI P+ K SADYSQIELRI+AH++ + + F Sbjct: 1 RLSSSDPNLQNIPVRDDDGKEIRKCFIPEPSCKFFSADYSQIELRIMAHLSCDENMMEAF 60 Query: 772 ENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DIHR A++I+ +++V+ R+ AK NF IIYGI+ + LA ++ I EA Sbjct: 61 REGFDIHRATASKIWKEAMDEVTDSQRKQAKQANFGIIYGITTYGLAQRMGIDNGEARQL 120 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I YF FP + EY+EK K R+ GY ET+FGRR + +INS ++R ER AINAP Sbjct: 121 IDDYFTTFPKVKEYMEKAKEIARERGYAETLFGRRRYLPDINSKNGTVRGFAERNAINAP 180 Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 IQGS ADI + AMI + K + + ++M+LQ+HDEL F V +E +I++ M+ A Sbjct: 181 IQGSEADIIKLAMIRIWKRFKKEGIRSRMILQVHDELNFSVYPDEAEKVEKIVLEEMQGA 240 Query: 952 CLPKINLRVPLKVNIKVSNNWQE 974 L VPL +NW E Sbjct: 241 ----YPLHVPLIAEAGWGDNWLE 259 >gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] Length = 755 Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 176/636 (27%), Positives = 309/636 (48%), Gaps = 100/636 (15%) Query: 411 ISTLDQKDDTSFKVETIFIDLS-------------------VHTSQDSTGKNTLTKEILS 451 ++ L Q+D+ + ET +D+ + + G+ + +L+ Sbjct: 131 VTDLQQEDEIAVDTETTGLDVYNDVIVGLSFTLPKADYHVYIPVAHKVAGQQLSRRAVLT 190 Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQ 510 LK + + KI HN KYD +L R+G+ +RG + D M+ VL+ + + ++A Sbjct: 191 ALKPILTDVNIGKILHNSKYDIHMLIRHGLRLRGIKHDTMIAMAVLNENEPTLALKNLAT 250 Query: 511 KW--------LSYTRKEIL-KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL- 560 K+ SYT +E+ K+ + IP+D +A +++++ +L+ R L Sbjct: 251 KYGKYFGFEDKSYTYEELFGKTSFAEIPLDA-----ALVYAAKDTHLTYELYKWQRQHLN 305 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEK 620 E L +Y+ L+ P+IDV ME G ID D + AE+ + LE N+ + G+ Sbjct: 306 QKESLRLIYDELENPLIDVCVDMEQAGFLIDMDFAMEYKAELKGEIAGLEANLTEHFGD- 364 Query: 621 FNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNILEWRQLSK 679 N +SP QL +L+ KLK P K + T + L+++ + + I +L++R+L+K Sbjct: 365 INFNSPLQLAAVLYDKLKLPV---IKGKERSTDVKTLKKLRDETKHEGIDVLLKYRELTK 421 Query: 680 IKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS 739 + TY ++LP I K+ +H ++ +T+TGR AS EPNLQN+P + RR ++ Sbjct: 422 LLGTYVEALPQLI-KKDGLLHGSFNQVATVTGRFASREPNLQNLPPRA------RRLIVA 474 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS--PQM 797 P ++ D+SQIE R+LAH++ L + + D++ +A+ +F V+ E+ + Sbjct: 475 PEDSLILGVDFSQIEPRVLAHMSGDPHLQEPYLKGQDLYSTLASRVFKVSYEECGDDSKY 534 Query: 798 RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNG 857 R+ K +++YG S + LA QL I EA +I+ +F +P ++ +I T F +QN Sbjct: 535 RKMMKVGLLAVMYGTSMWTLADQLGITVEEANQFIEDFFATYPDVYAFICATHEFAKQNE 594 Query: 858 YVETIFGRR----------IHYDEINSPKSSIRNIN------------------------ 883 YVET++GR+ I YD++ + I Sbjct: 595 YVETLYGRKRRFPGHREKAIVYDKLATEICEILGTKAVPYDYWQYKKELPVILRRQFRAV 654 Query: 884 -------ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 R A+NA IQG+AADI +RA+I+++ K++ +HDE + + + Sbjct: 655 KGEVERVRRMAVNARIQGTAADIMKRALINLYND------GRKIIGTVHDEALL-IVNKN 707 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 IT A V +E + NL VP++V+ ++S W Sbjct: 708 ITLAE---VEKIEACMIRSANLNVPIRVDTELSTRW 740 >gi|307199388|gb|EFN80013.1| DNA polymerase theta [Harpegnathos saltator] Length = 1937 Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 138/438 (31%), Positives = 233/438 (53%), Gaps = 48/438 (10%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 LLH + ++ + +++ ME++GI ++ L++ + I + SLE YDL+G KFNLS Sbjct: 1510 LLHTFRDIEMRIATILACMELSGIGVNLKALQETLSVILSEMQSLETRAYDLAGRKFNLS 1569 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 S K++G +L K + T+ LE+ DNPI + ++ WR+L+ K+ Sbjct: 1570 SSKEVGQVL---------GLYKDKKVSTSKAVLEKC---DNPISRLVISWRKLNATKTKI 1617 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIK-----TDLGQKIRRAFIS 739 L N +++ R+H + T+TGR++ EPNLQN+P +L +RR+F+ Sbjct: 1618 VYPLLN-LSQEDSRIHG-NCITCTVTGRVSMHEPNLQNVPKDFHFEDNNLLVSVRRSFVP 1675 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 ++SADY Q+ELR+L H ++ + L ++ + DI + +AA+ V E+V+ +MR+ Sbjct: 1676 ALGNVMLSADYCQLELRLLTHFSQDSVLCEIMKQQGDIFKSIAAKWNNVIEEEVTNEMRQ 1735 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 K + + +IYG+ LA L I +EA +++ + + +PGI+++++ T NGYV Sbjct: 1736 RTKQLCYGMIYGMGVKSLAENLCISETEAQHFLESFMNAYPGIYKWLDDTLEKAHHNGYV 1795 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH----- 914 T+ GRR ++ S KSS R ER A+N +QGSAADI ++AMI + + + Sbjct: 1796 TTLLGRRRQLPDLRSTKSSTRAQAERQAVNTKVQGSAADIVKKAMIIIEEKMRHSFPDSV 1855 Query: 915 --------------------KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLP 954 + ++LQ+HDEL++EV ++ + II SME C Sbjct: 1856 IVFPETQGTRKLRRNSRDMLQRGGYLVLQLHDELLYEVNSADLKEVAIIIKESMEDVC-- 1913 Query: 955 KINLRVPLKVNIKVSNNW 972 L VPL V ++V W Sbjct: 1914 --QLTVPLPVKVRVGPAW 1929 >gi|196005441|ref|XP_002112587.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens] gi|190584628|gb|EDV24697.1| hypothetical protein TRIADDRAFT_25163 [Trichoplax adhaerens] Length = 1492 Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 168/575 (29%), Positives = 287/575 (49%), Gaps = 58/575 (10%) Query: 425 ETIFIDLS-VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GIS 482 ++ F++L +T QD N EN +KI +N+K +L R+ + Sbjct: 943 DSYFVNLGDCNTLQDDVANN-------------IENSSAIKIAYNLKEQYKILTRHLQVE 989 Query: 483 MRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK------SRKSSIPIDKISD 535 ++G D + ++LD +I +L+ +L + + I + S Sbjct: 990 IKGTSYDPKIGIWLLDQDAHEKTFHAIISNYLA-DEAALLDCVIGTCTDGNGIGLHYNSQ 1048 Query: 536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLL 595 + + A S ++ +L ++ L +L +Y ++ P I + +E+ GI D Sbjct: 1049 TSGRRRACIESVLVHKLHSVVEAMLKERELYKLYSEIEMPTIRTLCWLELDGIGFCMDEC 1108 Query: 596 KQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQ 655 +Q + L +EE Y ++G F L+SP + +L+T+L K Q Sbjct: 1109 QQQIERLQYRLHYIEEMAYRIAGRSFQLTSPTDIAHVLYTELN----------TCKDVLQ 1158 Query: 656 DLEQINCGDNPIIKNILEWRQLSK--IKSTYA-DSLPNHINK-RTQRVHTFYSLASTMTG 711 L QI+ P+ +LEWR+++ K+ Y + +K +T RV+ + T TG Sbjct: 1159 KLSQIH----PLPALVLEWRRINSALTKTLYPLKRYSKYCHKSKTYRVYPTCQM-HTATG 1213 Query: 712 RLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK--LISADYSQIELRILAHIAKITPLYQ 769 R++ +PNLQNIP D+ + +R I T L+SADYSQ+ELR++AH+++ L + Sbjct: 1214 RISISDPNLQNIPKDFDIAKMVRMRNIIGCTNDTILLSADYSQLELRLIAHLSEDKQLSR 1273 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAA 829 V + D+ + +A+E + + VS + R+ AK + + IIYG++P L Q+++P +AA Sbjct: 1274 VLNDGGDVFKAIASEWLCIPTDHVSDEQRQRAKQMCYGIIYGMTPMALGEQMKVPEEQAA 1333 Query: 830 DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN 889 ++ + R+ GI ++IEKT R+ GYV TI R+ I S + +R+ ER AIN Sbjct: 1334 TFMHTFKSRYNGIAKFIEKTLVSCRREGYVSTIMNRKRLLPNIRSTNARLRSHAERQAIN 1393 Query: 890 APIQGSAADITRRAMISVHKSLED----------HKLATKMLLQIHDELVFEVPEEEITT 939 +QGSAAD+ + AMI++HK +++ + K +LQ+HDEL+FE+ E+ + Sbjct: 1394 TTVQGSAADLVKIAMINIHKRIDEMCANRANRDNAEWKPKFVLQMHDELLFEIKANELES 1453 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 S I+ ME A + LRV L+V IK W E Sbjct: 1454 VSLIVKQEMENA----LKLRVKLEVKIKTGKYWGE 1484 >gi|240142580|ref|YP_002967093.1| hypothetical protein MexAM1_META2p0958 [Methylobacterium extorquens AM1] gi|240012527|gb|ACS43752.1| Hypothetical protein MexAM1_META2p0958 [Methylobacterium extorquens AM1] Length = 729 Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/321 (39%), Positives = 183/321 (57%), Gaps = 23/321 (7%) Query: 1 MQKENH-------LFLVDGSSFIYRAFY----ATPLLS-RKHDGLPVNAIAGFCNMLWKL 48 M++EN + LVDGS F++R ++ P + R DG P AI FC L Sbjct: 1 MERENAPVGPGDVVALVDGSFFMHRTYHLAASGDPARNLRPSDGFPNGAIRKFCERLLGF 60 Query: 49 LQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIP 108 L+ + SH + FD+ + R+E++P YKANRP+ P L PL R A +AFG Sbjct: 61 LEAGFGGTRPSHLGIFFDHSRRSHRSELFPGYKANRPEPPADLEALKPLFRDAVRAFGYG 120 Query: 109 AIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD---------TVK 159 IE + +EADD+IATY A G V ++ +DKDL+QLV PT +D + Sbjct: 121 CIEAENYEADDLIATYATAASARGAHVLMVGSDKDLLQLVGPTVFAFDFEYGVPGRSGYR 180 Query: 160 EEKI-DIEHVIKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENI 217 ++ D V W G PPE++ + AL GD DN+PG+PGIG KTAA L+ EYG+LE + Sbjct: 181 PARLFDAAAVAAAWEGTPPERLGDVLALMGDQTDNVPGVPGIGMKTAAKLVAEYGDLETL 240 Query: 218 LINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277 L NA IKQ RR+ +L +AETARLSR+LV L + P+ +PL+ L+L + L F+ Sbjct: 241 LANADAIKQPGRRDALLAHAETARLSRRLVELERNAPMPVPLDDLLLGWPDPDVLFPFVN 300 Query: 278 ALEFTKLINRVATTYDCDAAN 298 A+EF+ L ++ Y +A++ Sbjct: 301 AMEFSWLGRKLGQLYQVEASS 321 >gi|118579386|ref|YP_900636.1| ribonuclease H [Pelobacter propionicus DSM 2379] gi|118502096|gb|ABK98578.1| ribonuclease H [Pelobacter propionicus DSM 2379] Length = 482 Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 118/264 (44%), Positives = 164/264 (62%), Gaps = 6/264 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M L+L+DGSS+IYRA+Y + G+P NA+ GF ML LLQ +R + + Sbjct: 1 MNAAPRLYLLDGSSYIYRAYYGVRDCA-TSVGMPTNAVFGFTRMLLSLLQENRPD----Y 55 Query: 61 FAVIFDYP-AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 AV+FD P TFR +IYP YKA+R +P L QLP +R QA IPA+E GFEADD Sbjct: 56 LAVVFDPPREGTFRRQIYPPYKAHRDDMPTDLAAQLPYIRQVVQALNIPALEAPGFEADD 115 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 +IAT + EG VT+++ DKDL+Q+V L DT+K + V+ ++G+PPE + Sbjct: 116 VIATLARRSADEGARVTVVTGDKDLLQIVGERIGLLDTMKGLRSGPREVLDRFGVPPELV 175 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L GDS DNIPG+PGIG KTAA L++ +G+LE +L S + ++RREN+ Y + Sbjct: 176 PDVLGLAGDSSDNIPGVPGIGEKTAAELVRRFGSLEGVLRWKSLVNGRQRRENLSAYGDQ 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLI 263 ARLS+ L +R DVP+ + L L Sbjct: 236 ARLSKTLATVRYDVPLELSLADLC 259 >gi|332019330|gb|EGI59836.1| Helicase POLQ-like protein [Acromyrmex echinatior] Length = 2176 Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 140/439 (31%), Positives = 236/439 (53%), Gaps = 45/439 (10%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 LL+ + ++ ++ ++ ME++GI ++ L+++S+ +S + SLE YDL+G KFN S Sbjct: 1752 LLYTFREVEMRIMTTLACMELSGIGVNLKSLQELSSVVSNEMQSLETKAYDLAGRKFNFS 1811 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 S K++G +L K + T+ LE+ DNPI ++ WR+L+ K+ Sbjct: 1812 SSKEVGQVL---------GLYKDKKVSTSKTVLEKC---DNPISTLVISWRKLNATKTKM 1859 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP-----IKTDLGQKIRRAFIS 739 L N + + RV + T+TGR++ EPNLQN+P +L +R AF+ Sbjct: 1860 IYPLLN-LAQGDSRVRG-NCITCTVTGRVSMHEPNLQNVPKDFSFADNNLVVSVRMAFVP 1917 Query: 740 PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRR 799 ++SADY Q+ELR+L H ++ + L ++ + S DI + +AA+ V E+V+ +MR+ Sbjct: 1918 VLGNIMLSADYCQLELRLLTHFSQDSILCKIMKQSGDIFKNIAAKWNNVAEEQVTNEMRQ 1977 Query: 800 HAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV 859 K + + +IYG+ LA L I EA ++++ + +PGI++++ +GYV Sbjct: 1978 RTKQLCYGMIYGMGVKSLAENLCISEPEAQEFLESFMSAYPGIYKWLNDILEEAHHDGYV 2037 Query: 860 ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE------- 912 T+ GRR + +++S KSS+R ER ++N +QGSAADI ++AMIS+ + Sbjct: 2038 TTLLGRRREFPDLSSTKSSVRAQAERQSVNTKVQGSAADIVKKAMISIEDKIRCYFPDSA 2097 Query: 913 --------DHKLATK-------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 KL + ++LQ+HDEL++EV ++ + II SME C Sbjct: 2098 IIFPEVHASRKLRSNLQQRGGYLVLQLHDELLYEVNLADLKKFAAIIRESMENVC----Q 2153 Query: 958 LRVPLKVNIKVSNNWQEEN 976 L VPL V I+V W + N Sbjct: 2154 LTVPLPVKIRVGPAWGDLN 2172 >gi|195113811|ref|XP_002001461.1| GI21961 [Drosophila mojavensis] gi|193918055|gb|EDW16922.1| GI21961 [Drosophila mojavensis] Length = 2181 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 144/426 (33%), Positives = 228/426 (53%), Gaps = 32/426 (7%) Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 +LL + L+ P+ + ME G + L+++ ++ + LE IY+L G +FNL Sbjct: 1767 QLLKFFRELEMPIQMSLCHMECIGFPAKEHSLQRLFQQMMATMKRLESKIYELHGSRFNL 1826 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 S + + +L K G+ T+ Q LE+I D+PI + IL +R+LS + + Sbjct: 1827 GSTQAVAKVLGLHRK-------ANGRVSTSRQILEKI---DSPISQLILNYRKLSMLLAK 1876 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--IKTDLGQK-----IRRA 736 L + RVH S+ T TGR++ EPNLQN+ +LG++ R A Sbjct: 1877 SMQPLLKCC--QANRVHG-QSITYTATGRISMSEPNLQNVAKDFHIELGKEQLKISCRSA 1933 Query: 737 FISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F K+ LISAD+ Q+E+RILAH+++ L QV ++ D+ +AA ++ VS Sbjct: 1934 FAPMDEKRCLISADFCQLEMRILAHLSQDKALLQVMNSTQDLFTAIAAHWNKIDESNVSE 1993 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 Q+R K I + I+YG+ L+ L+ EA +++ +PGI Y K F R Sbjct: 1994 QLRNGTKQICYGIVYGMGMRSLSEALKCTEQEAQMITEQFHLAYPGIKAYTMKVVKFARN 2053 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH- 914 NGYVETI GRR + D INS + ++ ER AIN+ IQGSAADI + A++ + K+L + Sbjct: 2054 NGYVETITGRRRYLDHINSGEVQLKTQAERQAINSTIQGSAADIAKSAILRMEKNLGRYR 2113 Query: 915 ------KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 K A ++L +HDEL+FEVP ++ ++++ +ME + L VPL+V +K+ Sbjct: 2114 EKLGLAKNAVNLVLHLHDELIFEVPTDKAKKVAKVLSLTMENC----VKLNVPLRVKLKI 2169 Query: 969 SNNWQE 974 +W E Sbjct: 2170 GRSWGE 2175 >gi|223999787|ref|XP_002289566.1| hypothetical protein THAPSDRAFT_262348 [Thalassiosira pseudonana CCMP1335] gi|220974774|gb|EED93103.1| hypothetical protein THAPSDRAFT_262348 [Thalassiosira pseudonana CCMP1335] Length = 249 Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 114/249 (45%), Positives = 161/249 (64%), Gaps = 1/249 (0%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+D S++I+R+++A P L R DG P A+ G C ML LL + + + FD Sbjct: 1 LLLIDASAYIFRSYHAIPPLHRS-DGTPTGALHGVCRMLQNLLLSRLLKGDRPRVVLAFD 59 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 + FR+EIYP+YKANR PE L+PQ LVR A +AFGI +E +G+EADD+IAT Sbjct: 60 FKGPNFRHEIYPEYKANRGPCPEDLVPQFELVREAAEAFGIVQVEAEGYEADDVIATLAR 119 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A +EG V I+S DKDLMQL++P + D+ +++ + V++KW + K+ + AL Sbjct: 120 QALEEGVDVDILSGDKDLMQLITPPVHMIDSTHFDRVTHDDVVEKWNVDSAKLGDVLALA 179 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GDS DNIPG+PGIG K AA+L+ EYG+L ++ A IKQKKRRE+++E AE L R+L Sbjct: 180 GDSSDNIPGVPGIGPKIAAMLINEYGSLSELISQAENIKQKKRRESLIENAEKVILFRQL 239 Query: 247 VMLRTDVPI 255 V L +P+ Sbjct: 240 VTLNETIPV 248 >gi|219815945|gb|ACL37071.1| truncated DNA polymerase I [uncultured bacterium] Length = 557 Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 175/566 (30%), Positives = 278/566 (49%), Gaps = 67/566 (11%) Query: 7 LFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 LFL+D + IYRA+YA +P ++ K G NA GF + L L+ + +H AV Sbjct: 5 LFLLDAMALIYRAYYALIRSPRITSK--GRNTNAQFGFTSTLIDLINKEK----PTHLAV 58 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A T R+ + +YKANR PE L+ LP ++ AF IP +E+ G+EADD+I T Sbjct: 59 CFDTEAATERHTDFAEYKANRQAAPEDLISALPDIKKIITAFNIPVVELDGYEADDVIGT 118 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCL-----YDTVKEEKIDIEHVIKKWGIPP-E 177 + A +G+ V +++ DKD QL+ Y KE+ +D + + +KWGI + Sbjct: 119 LAWQAADKGYEVFMVTPDKDYGQLLIHNNVFIYKPPYQGGKEDILDAKKICEKWGIERVD 178 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 ++V + L GD++DNIPGI GIG KTA LL+E+ NLENIL NA IK E I Sbjct: 179 QVVDMLGLMGDAVDNIPGIAGIGEKTACKLLKEFDNLENILANADNIK-GAVGEKIRNGK 237 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVA----TTYD 293 E A +S+KL + TDVP+ E L++ N P L LEF L R+ + +D Sbjct: 238 EAALMSKKLARIITDVPVQFHEEDYRLKEWNQPELKELFNELEFKALGKRLLGDDFSVFD 297 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 A N P ++ G A+E S +++ + +++T + + L Sbjct: 298 -KAGNATPANGQMDMF---GTAVE--------------SKSTEENANSETDETTETVGLT 339 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 + L P +YT I + I+Q V +L SF T A + + ++ Sbjct: 340 ADKNLGNTP---HTYTLIDTEEKIKQLVAELMAQDEISFDTETTGTYAHDVELVGLSF-- 394 Query: 414 LDQKDDTSFKV-ETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD 472 +K E +I ++ T+ +L + K F++ IG N+KYD Sbjct: 395 -------CYKTGEGYYIPCPPSANE--------TQALLQHFKPLFDDASKKWIGQNVKYD 439 Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLD-SGRSSHDIASIAQKWLSYT----RKEILKSRKS 526 +VL YG+ + G F D ML Y+++ GR D ++ ++L Y + I K K+ Sbjct: 440 LIVLKWYGVLLAGQFFDTMLAHYLIEPEGRRGMDY--LSAQYLQYEPVHIEELIGKKGKN 497 Query: 527 SIPIDKISDSQVQEHAIENSNVILQL 552 + + + +++E+A E++++ LQL Sbjct: 498 QLTMKDVELEKIKEYAAEDADITLQL 523 >gi|328782961|ref|XP_001120279.2| PREDICTED: DNA polymerase theta [Apis mellifera] Length = 1864 Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 144/440 (32%), Positives = 230/440 (52%), Gaps = 53/440 (12%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 LL+ ++ ++ +I +++ ME+TG+ + L+ +S+ I + ++SLEE Y L G+KFN S Sbjct: 1437 LLYTFKDIEMKIIILLAYMELTGLGVCLKSLQDLSSVIREEMISLEERAYALCGKKFNFS 1496 Query: 625 SPKQLGDIL-FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 S K++G+IL K K S K GQ D+PI ++ WR+L+ KS Sbjct: 1497 SSKEVGEILGLYKGKKISVNKAVLGQ-------------SDHPISNLVMSWRKLNVTKSK 1543 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQK-------IRRA 736 L N + + + R+H + ST+TGR++ EPNLQN+P D K +R A Sbjct: 1544 IIYPLLN-LAQHSSRIHG-NCVTSTLTGRISMHEPNLQNVP--RDFNSKDNSFTISVRMA 1599 Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 FI ++SADY Q+ELRILAH +K T L + DI + +AA+ V+ +V + Sbjct: 1600 FIPTVGNIILSADYCQLELRILAHFSKDTILCNIMRKPGDIFKNIAAKWNHVSENEVDDK 1659 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 MRRH K + + +IYG+ LA L + +A ++++ + + +PGI +++ R N Sbjct: 1660 MRRHTKQLCYGMIYGMGVKTLAENLSVDEVKAKEFLESFMNAYPGISKWLNNVLEEARIN 1719 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL----- 911 GY+ TI RR + + S ++ ER A+N +QGSAADI ++AMI + K + Sbjct: 1720 GYITTILERRRMFPGLTSINPMEKSQAERQAVNTKVQGSAADIVKKAMIDIEKRMRFEFS 1779 Query: 912 -------------------EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 E ++LQ+HDEL++EV ++ + I+ SME+ C Sbjct: 1780 TSLPIMPANSSRKLRSNSKETQHKGGYLVLQLHDELLYEVNIYDLRQVATIVKESMEQVC 1839 Query: 953 LPKINLRVPLKVNIKVSNNW 972 L VPL V +KV W Sbjct: 1840 ----QLTVPLPVKLKVGPTW 1855 >gi|23007000|ref|ZP_00049062.1| COG0258: 5'-3' exonuclease (including N-terminal domain of PolI) [Magnetospirillum magnetotacticum MS-1] Length = 552 Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 138/403 (34%), Positives = 212/403 (52%), Gaps = 43/403 (10%) Query: 57 IASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFE 116 + +H ++FD +FR E++PDYK +RP P+ L Q+PL+R A +AFG+ A+E++ +E Sbjct: 86 MPTHLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELERYE 145 Query: 117 ADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYD----------TVKEEKIDIE 166 +DD+I+TY AE G V I+S+DKDLMQLVS YD E +D E Sbjct: 146 SDDLISTYARQAEARGAEVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDRE 205 Query: 167 HVIKKW-GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK 225 +I KW G+ PE++ AL GD+ DN+PG+PGIG KTAA L++EYG+L+ +L A IK Sbjct: 206 AIIAKWEGLSPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLDQLLERAGDIK 265 Query: 226 QKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 Q KRRE +L + ARLSR+LV L +VP+ +PL+ L + + +L+ FLKA+EF L Sbjct: 266 QPKRRETLLANIDQARLSRRLVALEENVPVPVPLDELGVPQPDPQKLVGFLKAMEFNTLT 325 Query: 286 NRVATT--YDCDAANIEPVVLD-----INTTENKG------IAIETEIDRDTTIKTSQ-- 330 R+A D +A +P +L T G + +D +T + Sbjct: 326 RRIAQMLHVDPEAVKPDPALLPGAQPHAYTNAAGGSDAVPFFGDDVPVDPETAAAPERKD 385 Query: 331 ------------FSSLS--DQTSKIN--SEQTPQKLFLERLQKLSQYPINNDSYTKIVNT 374 F+ L DQ K E TP L R + + P + +Y I Sbjct: 386 GAAPPEGGEVDPFADLDLPDQAPKKRGPGEPTPSALVAARAAEAVK-PFDTGAYETISTV 444 Query: 375 KDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQK 417 ++ W+ + G + TD +DA + + ++++T+ + Sbjct: 445 AQLEAWIAESYEAGVIAVDTETDALDAAKAGLVGVSLATVPGR 487 >gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 751 Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 161/594 (27%), Positives = 296/594 (49%), Gaps = 82/594 (13%) Query: 436 SQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSY 494 + ++ G +L+ LK++ + K+ HN K+D +L R+G+ MRG D M+ Sbjct: 174 AHNNAGPQLRRSYVLNGLKRYLTDPTVGKVLHNAKFDIHMLLRHGMRMRGLAHDTMIAMK 233 Query: 495 VLDSGRSSHDIASIAQKWL--------SYTRKEIL-KSRKSSIPIDKISDSQVQEHAIEN 545 +L+ S + ++A ++ S+T +++ K+ + +P+D +A ++ Sbjct: 234 ILNENEPSVALKNLATRYGKFFGFDGESHTFEDLFGKACFADVPLD-----MALIYAAKD 288 Query: 546 SNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 +++ +L+ L E LL +Y L+ P++D+ +ME TG +D ++ E+ Sbjct: 289 THLTWELYKWQMEHLTKREDLLKLYRELENPLVDICVEMEQTGFAVDTAFAQEYGEELKG 348 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC-- 662 L +E+ + GE N +SP QL ++L+ +L P G + T D++ + Sbjct: 349 ELAEVEKTLVAHFGE-INFNSPAQLAEVLYDRLGLPQGKERST--------DVKTLKGLK 399 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN 722 G +P I+ +L++R+L+K+ TY ++LP+ + K R+H ++ +T+TGR AS EPNLQN Sbjct: 400 GRHPGIEPLLKYRELTKLLGTYVEALPHQL-KADGRIHGSFNQVATVTGRFASREPNLQN 458 Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +P + RR ++P L+ D+SQIE RILAH++ + + D++ +A Sbjct: 459 LPPRA------RRLIVAPKGWLLLGIDFSQIEPRILAHMSGDPHFREPYLKGEDLYSTLA 512 Query: 783 AEIFGVNIEKVS--PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 A +F V + + + R+ K +++YG S F L+ QL I EA +I+ ++ +P Sbjct: 513 ARVFKVPLSECGDGSKYRKMMKIGLLAVMYGTSMFTLSEQLGISVEEAHRFIEGFYDEYP 572 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRR----------IHYDEINS---------------- 874 ++ +I+ T FV++N YV T++GR+ I YD++ + Sbjct: 573 DVYAFIKDTWEFVKKNEYVATLYGRKRRFPGHREQAIVYDQLAAKICKALGTERVPLDFW 632 Query: 875 -----PKSSIRNIN---------ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 PK R R A+NA IQG+AADI +RA++++++ K+ Sbjct: 633 SNKGIPKDLKRKFGAVKGEVERVRRMAVNARIQGTAADIMKRALLNLYEYTRAR--GWKI 690 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDE + V + IT A V +E + L VP+KV+ ++ W + Sbjct: 691 NGTVHDEALLLV-RDTITLAE---VEELEACMVRAAELEVPVKVDTEIMARWGD 740 >gi|298706211|emb|CBJ29252.1| DNA polymerase [Ectocarpus siliculosus] Length = 1219 Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 144/465 (30%), Positives = 236/465 (50%), Gaps = 57/465 (12%) Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN-IYDLSGEKFN 622 K+L E+++ P I V++ ME++G+ + + + S + +L L+ + + G FN Sbjct: 739 KMLAACEQVEMPAIPVLAGMEVSGVVFLPERVTRFSDALGNHLEGLKRTAVKAVGGRDFN 798 Query: 623 LSSPKQLGDILFTKLKFPSGA-KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 L+SP Q+ D+LF LK PS K + T+A+ LE + G + ++ ILE+R ++K K Sbjct: 799 LASPDQVADVLFKHLKLPSPPVKAGSVHASTSAEVLEGLQ-GKHAVVAPILEFRGVNKYK 857 Query: 682 STYADSLPNHI--------------NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT 727 +TY D L R+H ++ S TGRL+ PNLQ +P + Sbjct: 858 TTYVDKLAERALGAAAAESAVPASQGAGAARIHATWNQTSARTGRLSCSRPNLQQMPKGS 917 Query: 728 DL-----GQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFE---------- 772 D G +R AF + + L++ADYSQIE+R+LA + L +F Sbjct: 918 DPLAGVEGVNVRDAFSATRSFTLMAADYSQIEMRVLADACRDPGLRNLFATLGGTNDAGA 977 Query: 773 --NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 D++R +AA++F VS + R AK + I YG+ ++A +L I S+A Sbjct: 978 STGGGDVYRKLAAQVFAKEEHGVSDEERNRAKVVCLGITYGMGTPQVAKKLEITESQAQG 1037 Query: 831 YIKRYFHRFPGIHEYIEKT-------------KNFVRQNGYVETIFGRRIHYDEINSPK- 876 ++ + FPGI ++ T + F R+NGYV T+ GRR H EIN+ + Sbjct: 1038 LVRSFLKAFPGIEPFMAATRRYGTPCRHQISQRRFARENGYVCTLTGRRRHLPEINNSRN 1097 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLE------DHKL-ATKMLLQIHDELV 929 ++ + ER A+N+ +QG+AADI + AM+ V + L+ D L ++++QIHDELV Sbjct: 1098 AAAKAQAERQAVNSVVQGTAADIMKTAMVLVARRLDAWRSSLDEGLDCPRLIMQIHDELV 1157 Query: 930 FEVP--EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 E P EE++ ++ ME + ++ PL VN+ V +W Sbjct: 1158 LECPACEEDLERLKGLLADCMEVEAPAVLGIKCPLTVNMLVGMSW 1202 >gi|304389498|ref|ZP_07371461.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656744|ref|ZP_07909631.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327308|gb|EFL94543.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492699|gb|EFU82303.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 317 Score = 221 bits (562), Expect = 7e-55, Method: Composition-based stats. Identities = 113/277 (40%), Positives = 168/277 (60%), Gaps = 5/277 (1%) Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELR 756 R+HT + TGRL+S++PNLQNIP +T GQKIR AF+ P L++ADYSQIE+R Sbjct: 41 RIHTTFGQTVAATGRLSSIDPNLQNIPARTVDGQKIREAFVPQKPYAALMTADYSQIEMR 100 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 I+AH++ L F + D+HR VAA ++GV ++V+P R H K ++ + YG+S + Sbjct: 101 IMAHLSGDEGLLAAFASGEDLHRSVAALVYGVQPDEVTPTQRSHVKATSYGLAYGLSAYG 160 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 LA QL I + +A + YF RF + EY+ + + GY ET+ GRR + E+ S Sbjct: 161 LAAQLNISQRDAKQLMDTYFERFGKVREYLNQIVATATRVGYTETMRGRRRYLPELRSTN 220 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 ++ + RAA+NAPIQGSAAD+ + AM+ V L +L +++LLQ+HDELV EV E Sbjct: 221 RNVADNARRAALNAPIQGSAADLMKAAMLQVDADLRQEQLQSRVLLQVHDELVLEVAPGE 280 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 ++ +M LRVPL+V++ + NW+ Sbjct: 281 TERLETLVRQAMTGVA----KLRVPLEVSVGIGPNWR 313 >gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 814 Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 128/405 (31%), Positives = 228/405 (56%), Gaps = 7/405 (1%) Query: 480 GISMRGF-EDIMLMSYVLDSGRSSHDIASIAQKWLSYT-RKEILKSRKSSIPIDKISDSQ 537 G ++ G D L +Y++ G+ S + ++ ++L R E + ++ S+ D +D++ Sbjct: 393 GWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAE 452 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 + I + ++ L L +L + ++ P+ V+++ME GI +D +L + Sbjct: 453 TIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTE 512 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDL 657 + ++ + E Y + G++ NL SPKQL +LF +L P +TKTG + T A L Sbjct: 513 LQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADAL 571 Query: 658 EQI-NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + + + +P ++++L R ++++K T D L + R+HT ++ TGRL+S Sbjct: 572 QSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAA-DGRIHTTFNQTIAATGRLSST 629 Query: 717 EPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 EPNLQNIPI+TD G++IR AF+ +L++ADYSQIE+RI+AH++ L + F Sbjct: 630 EPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGE 689 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+H VA+ FGV I++V+ ++RR K +++ + YG+S + L+ QL+I EA + + Y Sbjct: 690 DLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAY 749 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 F RF G+ +Y+ R++GY T+ GRR + E++S +R Sbjct: 750 FARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVR 794 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 112/301 (37%), Positives = 159/301 (52%), Gaps = 13/301 (4%) Query: 8 FLVDGSSFIYRAFYATPLLSRK-HDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+DG+S +RAFYA P + K GL NA+ GF ML LL ++ +H A FD Sbjct: 1 MLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLL----RDEAPTHIAAAFD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR + YP+YKANR P+ Q+ + + A GI + GFEADD+IAT Sbjct: 57 VSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLAT 116 Query: 127 IAEKEGFAVTIISTDKDLMQLVS-PTTCLY--DTVKE-EKIDIEHVIKKWGIPPEKMVCL 182 AE EG+ V +++ D+D +QLVS T LY V E + E V++K+G+ P + Sbjct: 117 QAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPDF 176 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GD DN+PGIPG+G KTAA + EYG+L +++ N ++ K A R Sbjct: 177 AALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVR- 235 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 +R+L L DVP+ + L L+ + + LEF L +R+ +D AA P Sbjct: 236 NRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRL---FDTLAAAGGPE 292 Query: 303 V 303 V Sbjct: 293 V 293 >gi|294810417|ref|ZP_06769074.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294442382|gb|EFG11192.1| 5'-3' exonuclease, SAM domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 614 Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 176/622 (28%), Positives = 305/622 (49%), Gaps = 47/622 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M N LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MDSSNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + +E V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 QSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYD 293 E S+ L ++ DVPI + ++ L+ E+ + L S + LEF LI+RV Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDSLVREEADEDSLRSIFEELEFRTLIDRVLKKEV 293 Query: 294 CDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLE 353 + T ++ + + I+ F++ + N +K LE Sbjct: 294 SGNGITSTPKSKVATGKSAPSPLPLFPEEGGGIQGDLFANFTP-----NEPNEAKKSNLE 348 Query: 354 RLQKLSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAIST 413 L+ S+ +Y I K ++ +QKL T S T + ++ + ++ S Sbjct: 349 TLESQSR------NYQLIDTEKKRREIIQKLLTSKILSLDTETTETEPMDAELVGMSFSI 402 Query: 414 LDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDK 473 + E ++ V + +D K I+ + FENE+ LK+G NIKYD Sbjct: 403 AEN--------EAFYV--PVPSDRDEALK------IVKEFRPVFENENSLKVGQNIKYDM 446 Query: 474 LVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSR-KSSI 528 +VL YG ++G D M+ YVL H + +A+ +L Y E++ + K+ Sbjct: 447 IVLQNYGAVVKGPLFDTMIAHYVLQP-ELRHGMDYLAEIYLHYQTIHIDELIGPKGKNQK 505 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 + + V +A E++++ L+L +L +L ++ ++ P++ V+ +E G+ Sbjct: 506 NMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGV 565 Query: 589 QIDQDLLKQVSAEISKNLLSLE 610 +D + L+Q SA + + +E Sbjct: 566 LLDTEALQQSSAHFTAQMEQIE 587 >gi|195450899|ref|XP_002072681.1| GK13557 [Drosophila willistoni] gi|194168766|gb|EDW83667.1| GK13557 [Drosophila willistoni] Length = 2080 Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 145/424 (34%), Positives = 233/424 (54%), Gaps = 32/424 (7%) Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 +LL + L+ P+ + ME TG Q+ L+ +S ++ + LE IY+L G +FNL Sbjct: 1666 QLLKFFRDLEMPIQLSLCNMEFTGFPAKQESLQGLSQQMLSTMKKLEAKIYELHGSRFNL 1725 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 S + + +L K +G+ T+ Q LE++ D+PI + I+ +R+LS + + Sbjct: 1726 GSSQAVAKVLGLHRK-------ASGKVSTSRQILEKL---DSPISQLIVGYRKLSTVLAK 1775 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP----IKTDLGQ---KIRRA 736 L + RV+ SL+ T TGR++ EPNLQN+ I D + R A Sbjct: 1776 NVQPLLKCC--QDNRVYG-QSLSYTATGRISMSEPNLQNVAKDFEINLDSDKVNISCRSA 1832 Query: 737 FISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F+ K+ LISAD+ Q+E+RILAH+++ L +V + D+ +AA +N +VS Sbjct: 1833 FLPMDFKRCLISADFCQLEMRILAHLSQDPALLEVMNSPRDLFTAIAARWNHMNESEVSE 1892 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 +R K I + I+YG+ LA L+ +EA +++ + GI YI+K F R Sbjct: 1893 NLRNGTKQICYGIVYGMGMRSLAESLKCTENEAQTVSEQFHQTYAGISAYIQKVVKFARN 1952 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 NGYVETI GRR + + INS + I+N ER AIN+ IQGSAADI + A++ + K L ++ Sbjct: 1953 NGYVETITGRRRYLEHINSGELQIKNQAERQAINSTIQGSAADIAKSAILRMEKHLLRYR 2012 Query: 916 L-------ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 + ++L +HDEL+FEVP ++ ++++ +ME +C + L VPLKV +K+ Sbjct: 2013 ERLGITENSVNLVLHLHDELIFEVPIDKAKKIAKVLSLTME-SC---VKLSVPLKVKLKI 2068 Query: 969 SNNW 972 +W Sbjct: 2069 GRSW 2072 >gi|195399626|ref|XP_002058420.1| GJ14321 [Drosophila virilis] gi|194141980|gb|EDW58388.1| GJ14321 [Drosophila virilis] Length = 2086 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 145/427 (33%), Positives = 227/427 (53%), Gaps = 34/427 (7%) Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 +LL + L+ P+ + ME G + L+++ ++ + LE I++L G +FNL Sbjct: 1672 QLLKFFRELEMPIQMSLCNMECLGFPAQEQRLQRLLQQMLATMKKLEVKIFELHGSRFNL 1731 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 S + + +L K G+ T+ Q LE++ D+PI + IL+ R+LS + + Sbjct: 1732 GSTQAVAKVLGLHRK-------ANGRISTSRQILEKL---DSPISQLILDHRKLSMVLAK 1781 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--IKTDLGQK-----IRRA 736 L + RVH S+ T TGR++ EPNLQN+ DLGQ+ R A Sbjct: 1782 NMQPLLKCC--QANRVHG-QSITYTATGRISMSEPNLQNVAKDFLVDLGQEKINISCRSA 1838 Query: 737 FISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F+S K L+SAD+ Q+E+RILAH+++ L +V + D+ +AA + VS Sbjct: 1839 FVSSNEKHCLLSADFCQLEMRILAHLSQDKALLKVMNSPQDLFTAIAAHWNKIAESDVSE 1898 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH-RFPGIHEYIEKTKNFVR 854 Q+R K I + I+YG+ LA L+ EA I FH + GI Y K F R Sbjct: 1899 QLRNGTKQICYGIVYGMGMRSLAESLKCTEQEA-QMISEQFHLAYAGIKAYASKVVKFAR 1957 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 NGYVETI GRR + D INS + ++N ER AIN+ IQGSAADI + A++ + K++ + Sbjct: 1958 NNGYVETITGRRRYLDHINSGEPQLKNQAERQAINSTIQGSAADIAKSAILRMEKNIARY 2017 Query: 915 KL-------ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 + A ++L +HDEL+FEVP ++ ++++ +ME + L VPL+V +K Sbjct: 2018 REKLGLAENAVNLVLHLHDELIFEVPADKAKKVAKVLSLTMENC----VKLNVPLRVKLK 2073 Query: 968 VSNNWQE 974 + +W E Sbjct: 2074 IGRSWGE 2080 >gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] Length = 582 Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 170/567 (29%), Positives = 284/567 (50%), Gaps = 47/567 (8%) Query: 429 IDLSVHTSQDSTGKNTLTKEI-----LSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGIS 482 +D + Q + G T ++ LS L++ E LK+ HN KYD +L ++GI Sbjct: 42 LDARMRLLQLAAGGETFVVDVFEVKDLSPLREALEGGP-LKVLHNAKYDYSFLLAQHGIR 100 Query: 483 MRGFEDIMLMSYVLDSGRS--SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540 + D ML + +LD G S+ + ++A ++L T + K+ + ++S Q+ E Sbjct: 101 LSPLFDTMLAAQLLDGGEQGPSYSLEAVAGRYLQET---VDKTARREDWSKELSREQL-E 156 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID----QDLLK 596 +A ++ ++L L L+ L E L V R++ + +++ME+ GI++D ++L + Sbjct: 157 YAARDAAILLPLHERLQELLEREGLGPV-SRIEFGAVPAIAEMELAGIRLDVRRWRELER 215 Query: 597 QVSAEISKNLLSLE------ENIYDLSG--EKFNLSSPKQLGDILFT-KLKFPSGAKTKT 647 V + LE E + L G + NL+SP+Q+ + + ++ P T Sbjct: 216 VVRRRRDEAARRLESHFPQPEGVLPLEGLGPRLNLNSPQQIMEAFRSIGIELPD-----T 270 Query: 648 GQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS 707 W D +P +++LE+R+L K TY ++ ++ +T R+H + Sbjct: 271 RMWTLLTVD--------HPAARDLLEYRELQKKLGTYLETYEGFVHPKTGRIHASFLQCR 322 Query: 708 TMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 TGRLA PN+Q IP + + RR F++ L+ ADYSQIELRILA ++ Sbjct: 323 VPTGRLACTNPNVQQIPHEDEF----RRCFVAGEGNVLVIADYSQIELRILAEVSGDPGF 378 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 + F D+HR+ AA +FGV E+V+ + R AK INF + YG P LA QL Sbjct: 379 VEAFRRGEDLHRVTAATMFGVPKEEVTKEQRSAAKRINFGLAYGRGPRSLAAQLGTDEER 438 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A I YF + + Y+ +T N + G + T+ GR + S+ R +R A Sbjct: 439 ARRLIDEYFATYGRVQRYLNETANRALKEGALRTLSGRLRKFGRTRGLSSAERGALKREA 498 Query: 888 INAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHS 947 +N PIQG++ADI + A+I +H L D L +++ IHDE V E EE+ A+ + + Sbjct: 499 MNYPIQGTSADIAKLALIFIHSELRD--LDARLINCIHDEFVVECAEEQAEEAASRVRSA 556 Query: 948 MEKACLPKINLRVPLKVNIKVSNNWQE 974 M +A ++ RVP++V + VS W++ Sbjct: 557 MVRAG-ERLLKRVPVEVEVAVSREWRK 582 >gi|322380583|ref|ZP_08054735.1| DNA polymerase I [Helicobacter suis HS5] gi|321146905|gb|EFX41653.1| DNA polymerase I [Helicobacter suis HS5] Length = 856 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 141/407 (34%), Positives = 218/407 (53%), Gaps = 31/407 (7%) Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS- 641 M+ G +D K + E +NL +LE+++ ++ N++S +Q +L+ L S Sbjct: 463 MQGHGFLLDIAYFKVLQQEFKENLENLEQSMQNMLSMPLNVNSSRQWAQVLYEHLGLESK 522 Query: 642 -------GAKTKTGQWK----TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 G T K T AQ + C ++ +L +R++ K++STY + Sbjct: 523 GIKKGKIGLSTNEASLKALQATYAQSEVRGVC-VGVLLTKLLNYREIFKLQSTYVEPF-- 579 Query: 691 HINKRTQ-RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 + + TQ ++HT + T + RL+S PNLQNIPI+ DLG+KI R FI+ LI D Sbjct: 580 -LKRHTQGKIHTTFYQNKTASSRLSSANPNLQNIPIRHDLGRKIARGFIASAGCVLIGVD 638 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAH ++ L + FE DIH A +FG + P AK INF +I Sbjct: 639 YSQIELRLLAHFSEDQALLKAFEQKEDIHLNTATALFGNQAQAKRPI----AKAINFGLI 694 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG--RRI 867 YG+ +LA L+I + EA Y++RYF++FP I ++E+ K + Q G V T+ G RR Sbjct: 695 YGMGARKLAQTLQISQEEAKAYMERYFNKFPTIKNFLEELKARILQEGQVTTLLGHVRRF 754 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + + SPK + R +N QGSA+D+ + AM+++++ E + KML+Q+HDE Sbjct: 755 SFKQA-SPKLHADYL--REGVNTLFQGSASDLVKLAMLAIYQKYES-RADIKMLVQVHDE 810 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+ EV E E Q I ME LRVPL+ + +++NW + Sbjct: 811 LILEVSEIEARELQQEIKTLMENI----YPLRVPLECHASIASNWAD 853 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/182 (37%), Positives = 98/182 (53%), Gaps = 4/182 (2%) Query: 73 RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG 132 R + P YKANR P L QLP++ + G+ A+ ++G+E+DD+IA+ Y A K+ Sbjct: 63 RKTLDPAYKANRIA-PPHLHTQLPIILEWIEQMGLCALSVEGYESDDVIASLCY-AFKDH 120 Query: 133 FAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDN 192 F V IIS DKD QLV L D ++ + ++K+GI P + Q L GDS D Sbjct: 121 F-VRIISFDKDFYQLVDSQVVLCDLSSRKESGVTECMQKYGIAPCQFRDYQGLVGDSSDG 179 Query: 193 IPGIPGIGYKTAALLLQEYGNLENILINASRIK-QKKRRENILEYAETARLSRKLVMLRT 251 G+ GIG K A+ LL+++ NLE + N +K K E + A LSR+L L T Sbjct: 180 YKGVEGIGPKNASKLLEKHANLEALYANLDNLKLSPKLIEALRRDYNQAFLSRELATLNT 239 Query: 252 DV 253 + Sbjct: 240 SL 241 >gi|322378735|ref|ZP_08053164.1| DNA polymerase I (PolA) [Helicobacter suis HS1] gi|321148765|gb|EFX43236.1| DNA polymerase I (PolA) [Helicobacter suis HS1] Length = 856 Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 141/407 (34%), Positives = 218/407 (53%), Gaps = 31/407 (7%) Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPS- 641 M+ G +D K + E +NL +LE+++ ++ N++S +Q +L+ L S Sbjct: 463 MQGHGFLLDIAYFKVLQQEFKENLENLEQSMQNMLSMPLNVNSSRQWAQVLYEHLGLESK 522 Query: 642 -------GAKTKTGQWK----TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPN 690 G T K T AQ + C ++ +L +R++ K++STY + Sbjct: 523 GIKKGKIGLSTNEASLKALQATYAQSEVRGVC-VGVLLTKLLNYREIFKLQSTYVEPF-- 579 Query: 691 HINKRTQ-RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 + + TQ ++HT + T + RL+S PNLQNIPI+ DLG+KI R FI+ LI D Sbjct: 580 -LKRHTQGKIHTTFYQNKTASSRLSSANPNLQNIPIRHDLGRKIARGFIASAGCVLIGVD 638 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSII 809 YSQIELR+LAH ++ L + FE DIH A +FG + P AK INF +I Sbjct: 639 YSQIELRLLAHFSEDQALLKAFEQKEDIHLNTATALFGNQAQAKRPI----AKAINFGLI 694 Query: 810 YGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG--RRI 867 YG+ +LA L+I + EA Y++RYF++FP I ++E+ K + Q G V T+ G RR Sbjct: 695 YGMGARKLAQTLQISQEEAKAYMERYFNKFPTIKNFLEELKARILQEGQVTTLLGHVRRF 754 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + + SPK + R +N QGSA+D+ + AM+++++ E + KML+Q+HDE Sbjct: 755 SFKQA-SPKLHADYL--REGVNTLFQGSASDLVKLAMLAIYQKYES-RADIKMLVQVHDE 810 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 L+ EV E E Q I ME LRVPL+ + +++NW + Sbjct: 811 LILEVSEIEARELQQEIKTLMENI----YPLRVPLECHASIASNWAD 853 Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/182 (37%), Positives = 98/182 (53%), Gaps = 4/182 (2%) Query: 73 RNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEG 132 R + P YKANR P L QLP++ + G+ A+ ++G+E+DD+IA+ Y A K+ Sbjct: 63 RKTLDPAYKANRIA-PPHLHTQLPIILEWIEQMGLCALSVEGYESDDVIASLCY-AFKDH 120 Query: 133 FAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDN 192 F V IIS DKD QLV L D ++ + ++K+GI P + Q L GDS D Sbjct: 121 F-VRIISFDKDFYQLVDSQVVLCDLSSRKESGVTECMQKYGIAPCQFRDYQGLVGDSSDG 179 Query: 193 IPGIPGIGYKTAALLLQEYGNLENILINASRIK-QKKRRENILEYAETARLSRKLVMLRT 251 G+ GIG K A+ LL+++ NLE + N +K K E + A LSR+L L T Sbjct: 180 YKGVEGIGPKNASKLLEKHANLEALYANLDNLKLSPKLIEALRRDYNQAFLSRELATLNT 239 Query: 252 DV 253 + Sbjct: 240 SL 241 >gi|296197013|ref|XP_002806721.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Callithrix jacchus] Length = 965 Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 253/462 (54%), Gaps = 29/462 (6%) Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 V ++ EN ++ +L + L KL L ++ L+ P+I +++ ME IQ++++ +++ Sbjct: 456 VNQNVRENLKILYRLTMDLCSKLKDYGLWQLFCTLELPLIPILAVMESHTIQVNKEEMEK 515 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF----PSGAKTKTG--QWK 651 S+ + L LE+ + ++GE+F + S QL +ILF KLK P +TG ++ Sbjct: 516 TSSLLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSPRNCFPRTGLQKYP 575 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 +T++ + +P+ K ILE+RQ+ KIKST+ D L + K + + + ++ T+TG Sbjct: 576 STSEAVLNALRDVHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 633 Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756 RL++ PN+Q I PI+ + R F+S ++AD+SQIELR Sbjct: 634 RLSAKHPNIQGISKHPIQITKPKNFKGKEDEILTICPRAMFVSSKGHTFLAADFSQIELR 693 Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 ILAH++ L ++F+ S D+ + ++ V +E V+ R K + +S++YG Sbjct: 694 ILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEHVTHADREQTKKVVYSVVYGAGK 753 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 RLA L +P EAA +++ + ++ I ++ + Q GY+ +I GRR I++ Sbjct: 754 ERLAACLGVPVQEAAQFLESFLQKYKKIKDFAQAAIAQCHQTGYMVSIMGRRRPLPRIHA 813 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933 ++ ER A+N +QGSAAD+ + AMI V ++ H L +++ QIHDEL+FEV Sbjct: 814 RDQQLQAQAERQAVNFVVQGSAADLCKLAMIRVFAAVAASHTLTARLVAQIHDELLFEVE 873 Query: 934 EEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972 + +I + ++ + S+E+ + ++ L+VPLKV++ +W Sbjct: 874 DSQIPECAALVRRTMESLEQVQVLELQLQVPLKVSLSAGRSW 915 >gi|194668164|ref|XP_601658.4| PREDICTED: polymerase (DNA directed) nu [Bos taurus] Length = 975 Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 141/451 (31%), Positives = 250/451 (55%), Gaps = 28/451 (6%) Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 V+ +L + L +L V L ++ L+ P+I +++ ME I+++++ ++++SA + L Sbjct: 398 VLHRLTMHLCSQLQVCGLWQLFWTLELPLIPILAVMESHRIRVNKEEMERMSALLGSRLK 457 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKF----PSGAKTKTGQWKTTAQDLEQINCG 663 LE+ + ++GE+F ++S QL +ILF KL+ P A TG + + ++N Sbjct: 458 ELEQEAHFVAGEQFLITSNHQLREILFGKLRLHLLRPQDASPATGLRRLPSTSGAELNAL 517 Query: 664 DN--PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 + P+ + ILE+RQ+ KIKST+ D L + K + V + ++ T++GRL++ PN+Q Sbjct: 518 QDLHPLPRIILEYRQVHKIKSTFVDGLLACMKKGS--VSSTWNQTGTVSGRLSAKHPNIQ 575 Query: 722 NI---PIKTDLGQKI-----------RRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 I PI+ Q R AF+S ++AD+SQIELRILAH++ L Sbjct: 576 GISKHPIQITKPQSFKGEEDELSISPRTAFVSSEGYTFLAADFSQIELRILAHLSGDPEL 635 Query: 768 YQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPR 825 ++F+ S D+ + ++ V+ E+V+ R K + ++++YG RLA L +P Sbjct: 636 LKLFQESERDDVFSTLTSQWKDVSPERVTHADREQTKKVVYAVVYGAGKERLAACLGVPV 695 Query: 826 SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 EAA +++ + ++ I ++ + T +Q GYVE+I GRR I + +R ER Sbjct: 696 REAARFLESFLQKYKKIKDFTQATVARCQQTGYVESIMGRRRPLPRIRAHDPQLRAQAER 755 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQII 944 A N +QGSAAD+ + AMI + ++ L ++L QIHDEL+FEV + ++ + ++ Sbjct: 756 QAANFVVQGSAADLCKMAMIRIFTAMATSPTLTARLLAQIHDELLFEVEDSQVPEFTALV 815 Query: 945 VHSMEK-ACLP--KINLRVPLKVNIKVSNNW 972 +ME +P ++ L+VPLKV++ +W Sbjct: 816 QGTMEALQHVPALELQLQVPLKVSLSAGRSW 846 >gi|255024133|ref|ZP_05296119.1| DNA polymerase I [Listeria monocytogenes FSL J1-208] Length = 240 Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 110/240 (45%), Positives = 150/240 (62%), Gaps = 5/240 (2%) Query: 734 RRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792 R+ F+ S P K+ SADYSQ+ELR+LAHI++ L F++ DIH A ++F V ++ Sbjct: 1 RQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDE 60 Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852 V MRR AK +NF I+YGIS + L+ L I R EA D+I RYF +P + EY++ F Sbjct: 61 VDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRF 120 Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912 ++ GYVETI RR + EI S ++R ER A+N PIQGSAADI ++AMI + + L Sbjct: 121 AKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLV 180 Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 KL K+LLQ+HDEL+FE PE EI +I+ ME A + L VPLKV+ + W Sbjct: 181 SEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENA----VELSVPLKVDSAFGDTW 236 >gi|332259946|ref|XP_003279044.1| PREDICTED: DNA polymerase nu-like [Nomascus leucogenys] Length = 1502 Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 251/462 (54%), Gaps = 29/462 (6%) Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 V ++ EN ++ +L + L KL L ++ L+ P+I +++ ME IQ++++ +++ Sbjct: 995 VNQNVRENLKILYRLTMDLCSKLKDYGLWQLFCTLELPLIPILAVMESHAIQVNKEEMEK 1054 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF------PSGAKTKTGQWK 651 SA + L LE+ + ++GE+F + S QL +ILF KLK S +T ++ Sbjct: 1055 TSALLGARLKELEQEAHFVAGERFLIMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYP 1114 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 +T++ + +P+ K ILE+RQ+ KIKST+ D L + K + + + ++ T+TG Sbjct: 1115 STSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 1172 Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756 RL++ PN+Q I PI+ + R F+S ++AD+SQIELR Sbjct: 1173 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELR 1232 Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 ILAH++ L ++F+ S D+ + ++ V +E+V+ R K + ++++YG Sbjct: 1233 ILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK 1292 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 RLA L IP EAA +++ + ++ I ++ Q GYV +I GRR I++ Sbjct: 1293 ERLAACLGIPVQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGYVVSIMGRRRPLPRIHA 1352 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933 +R ER A+N +QGSAAD+ + AMI V ++ L +++ QIHDEL+FEV Sbjct: 1353 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASGTLTARLVAQIHDELLFEVE 1412 Query: 934 EEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972 + +I + ++ + S+E+ ++ L+VPLKV++ V +W Sbjct: 1413 DPQIPECAALVRRTMESLEQVQALELRLQVPLKVSLSVGRSW 1454 >gi|114592892|ref|XP_001147229.1| PREDICTED: polymerase (DNA directed) nu isoform 1 [Pan troglodytes] Length = 900 Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 249/462 (53%), Gaps = 29/462 (6%) Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 V ++ EN + +L + L KL L ++ L+ P+I +++ ME IQ++++ +++ Sbjct: 393 VNQNVCENLKTLYRLTMDLCSKLKDYGLWQLFCTLELPLIPILAVMESHAIQVNKEEMEK 452 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP------SGAKTKTGQWK 651 SA + L LE+ + ++GE+F + S QL +ILF KLK S +T ++ Sbjct: 453 TSALLGARLKELEQEAHFVAGERFLIMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYP 512 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 +T++ + +P+ K ILE+RQ+ KIKST+ D L + K + + + ++ T+TG Sbjct: 513 STSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 570 Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756 RL++ PN+Q I PI+ + R F+S ++AD+SQIELR Sbjct: 571 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELR 630 Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 ILAH++ L ++F+ S D+ + ++ V +E+V+ R K + ++++YG Sbjct: 631 ILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK 690 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 RLA L +P EAA +++ + ++ I ++ Q G V +I GRR I++ Sbjct: 691 ERLAACLGVPVQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHA 750 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933 +R ER A+N +QGSAAD+ + AMI V ++ H L +++ QIHDEL+FEV Sbjct: 751 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVE 810 Query: 934 EEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972 + +I + ++ + S+E+ ++ L+VPLKV++ +W Sbjct: 811 DPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSW 852 >gi|332818964|ref|XP_001147379.2| PREDICTED: DNA polymerase nu isoform 3 [Pan troglodytes] Length = 1502 Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 140/462 (30%), Positives = 249/462 (53%), Gaps = 29/462 (6%) Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 V ++ EN + +L + L KL L ++ L+ P+I +++ ME IQ++++ +++ Sbjct: 995 VNQNVCENLKTLYRLTMDLCSKLKDYGLWQLFCTLELPLIPILAVMESHAIQVNKEEMEK 1054 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF------PSGAKTKTGQWK 651 SA + L LE+ + ++GE+F + S QL +ILF KLK S +T ++ Sbjct: 1055 TSALLGARLKELEQEAHFVAGERFLIMSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYP 1114 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 +T++ + +P+ K ILE+RQ+ KIKST+ D L + K + + + ++ T+TG Sbjct: 1115 STSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 1172 Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756 RL++ PN+Q I PI+ + R F+S ++AD+SQIELR Sbjct: 1173 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELR 1232 Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 ILAH++ L ++F+ S D+ + ++ V +E+V+ R K + ++++YG Sbjct: 1233 ILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK 1292 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 RLA L +P EAA +++ + ++ I ++ Q G V +I GRR I++ Sbjct: 1293 ERLAACLGVPVQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHA 1352 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933 +R ER A+N +QGSAAD+ + AMI V ++ H L +++ QIHDEL+FEV Sbjct: 1353 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVE 1412 Query: 934 EEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972 + +I + ++ + S+E+ ++ L+VPLKV++ +W Sbjct: 1413 DPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSW 1454 >gi|224043967|ref|XP_002187783.1| PREDICTED: similar to polymerase (DNA directed), theta [Taeniopygia guttata] Length = 2588 Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 173/641 (26%), Positives = 282/641 (43%), Gaps = 127/641 (19%) Query: 452 YLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQ 510 YL+K + E L + I++ K +L GIS+ G FED + ++LDSG H + S+ Sbjct: 1947 YLQKKTKKERSLIMYDFIQHYKTLLMACGISLEGSFEDPKVACWLLDSGSKEHTLHSMVT 2006 Query: 511 KWLSYTRKEILKSRKS-----SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKL 565 +L + +L+ + S+ + D + A S ++ + L +L E L Sbjct: 2007 NFLP-SELPLLEGVGTGQGVQSLGLSASRDQSGRYRAAIESVLVFNVMDQLHKELQKENL 2065 Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 V+ +++ P +S +E+ GI + + L +E Y L+G F+L+S Sbjct: 2066 TDVFSKVEMPTHYCLSLLELNGIGFSTTAYETQKQVMQAKLSQIETKAYQLAGHSFSLTS 2125 Query: 626 PKQLGDILFTKLKFPSGAKTK-----------------------TGQWKTTAQDLEQINC 662 P + ++LF +LK P K + Q+ TT LE++ Sbjct: 2126 PDDIAEVLFLELKLPQNGDVKVQGNKKTLGYTRRATAKGNRVRLSKQFSTTKDVLEKLKT 2185 Query: 663 GDNPIIKNILEWRQLSK--IKSTYADSLPNHINKR--TQRVHTFYSLASTMTGRLASLEP 718 +P+ ILEWR+++ K Y +N +R++ S T TGR++ EP Sbjct: 2186 -LHPLPGLILEWRRINNAITKVVYPLQREKRLNSALGMERIYPI-SQTHTATGRVSFTEP 2243 Query: 719 NLQ------------------------NIPIKTDLGQKIRR------------------- 735 N+Q N+ LG + R+ Sbjct: 2244 NIQNVPRDFEIEMPTVVEESPPSQAHGNVNSHAALGGRCRKRSSILPNGLKVQAANISEE 2303 Query: 736 -----------AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAE 784 AF+ P +++ADYSQ+ELRILAH++ L Q D+ + +AAE Sbjct: 2304 RGIQFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSCDCRLIQALNGGTDVFKSIAAE 2363 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 ++ E V + R+ AK I + IIYGI L Q+ I +EAA+YI+ + R+ G+ + Sbjct: 2364 WKMIDPEAVGERTRQQAKQICYGIIYGIGAKSLGEQMGIDENEAANYIESFKSRYTGVQK 2423 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 ++ +T R++G+V+TI GRR + I P + ER A+N +QGSAADI + A Sbjct: 2424 FLRETVRSCRRDGFVQTILGRRRYLPAIKDPNPYSKAHAERQAVNTTVQGSAADIVKTAT 2483 Query: 905 ISVHKSLE------------------------DHKLATKML---------LQIHDELVFE 931 +++ K LE K T ML LQ+HDEL++E Sbjct: 2484 VNIQKRLEAFPSVFKSHGHLESSFQRDKTGRLSRKRNTGMLHPIRGGFFILQLHDELLYE 2543 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 V E+++ +QI+ ME A I L V L V +K+ +W Sbjct: 2544 VAEDDVIQVAQIVKREMENA----IKLSVKLDVKVKIGPSW 2580 >gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78] gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78] Length = 919 Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 135/421 (32%), Positives = 227/421 (53%), Gaps = 22/421 (5%) Query: 464 KIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 K+ H+ K V +G+++ G D L +Y++ GR + + +++ L Y +E++ Sbjct: 506 KVMHDAKGLMRVFGEHGMTVAGVAMDTALGAYLVKPGRRTFALDALS---LEYLGRELVP 562 Query: 523 SRKSSIPIDKISDSQVQEHAIE-NSNVILQLWLLLR---PKLIVEKLLHVYERLDKPMID 578 +++S + +D + Q + + IL L L P++ E LL ++ P Sbjct: 563 AQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGAEGLL---TDIELPTSA 619 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 ++++ME GI D++ L+++ + + + + G +FNL SPKQL ++LF +L Sbjct: 620 LLARMERAGIAADREHLEEMERQFAGAVEQAVREAHAAVGHEFNLGSPKQLQEVLFGELN 679 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDN----PIIKNILEWRQLSKIKSTYADSLPNHINK 694 P KTKTG + T A L + G P++ +L R+ +K++ST + L I Sbjct: 680 LPKTRKTKTG-YTTDADSLAWL-AGQTEHELPVL--MLRHREQAKLRST-VEGLIKSIAP 734 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI-SPPTKKLISADYSQI 753 R+HT ++ TGRL+S +PNLQNIP++TD G+ IRR F+ + L++ADYSQI Sbjct: 735 -DGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGYEALMTADYSQI 793 Query: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 ELR++AH+++ L F + D+HR VA +F V V +MRR K +++ + YG+S Sbjct: 794 ELRVMAHLSEDEGLIAAFTSGEDLHRTVAGYVFNVEPTAVDAEMRRKIKAMSYGLAYGLS 853 Query: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 F L+ QL I EA + YF RF G+ +Y+ + R GY T+ GRR + ++N Sbjct: 854 AFGLSQQLGIEAGEARALMDTYFERFGGVRDYLHRVVEEARATGYTATMLGRRRYLPDLN 913 Query: 874 S 874 S Sbjct: 914 S 914 Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 158/307 (51%), Gaps = 12/307 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLS-RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L L+DG S YRAF+A P + G P NAI GF +ML N+ ++ +HFAV F Sbjct: 126 LMLMDGHSLAYRAFFALPAENFTTSTGQPTNAIYGFASML----ANTLRDEQPTHFAVAF 181 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D T+R E + +YKANR K P+ Q+ L+ ++GFEADDIIAT Sbjct: 182 DVSRKTWRAEEFTEYKANRAKTPDEFRGQVELIGELLDTMHADRFAVEGFEADDIIATLA 241 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDT--VKE-EKIDIEHVIKKWGIPPEKMVC 181 AE GF V I++ D+D QLVS TT LY T V E + E V +++G+ P + Sbjct: 242 TQAEAAGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRYTPEKVEERYGLTPAQYPD 301 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 AL GD DN+PGIPG+G KTAA + ++G+ ++ A +K K +N ++ E + Sbjct: 302 FAALRGDPSDNLPGIPGVGEKTAAKWITQFGSFAELVERAEEVKGKA-GQNFRDHLEAVK 360 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT--KLINRVATTYDCDAANI 299 L+R+L + DVP+ E L + +L L LE L R+ Sbjct: 361 LNRRLTEMVRDVPLDKAPEDLERAAYDRKQLAVLLDTLEIRNPSLRERLLAVDPGAEQEQ 420 Query: 300 EPVVLDI 306 EPV D+ Sbjct: 421 EPVTEDV 427 >gi|307266791|ref|ZP_07548315.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Thermoanaerobacter wiegelii Rt8.B1] gi|306918184|gb|EFN48434.1| 5'-3' exonuclease, N-terminal resolvase-like domain [Thermoanaerobacter wiegelii Rt8.B1] Length = 288 Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 114/288 (39%), Positives = 179/288 (62%), Gaps = 10/288 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + ++DGSS +YRA+YA P+L+ +GL NA+ GF ML KL++ + + IA + Sbjct: 2 SKFLVIDGSSLMYRAYYALPMLTT-SEGLHTNALYGFTMMLIKLIEEEKPDYIA----IA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD A TFR++ Y DYKA R +PE L Q+ L++ F I +E++G+EADDII T Sbjct: 57 FDKKAPTFRHKEYQDYKATRQAMPEELTEQVDLLKEIIDGFNIKTLELEGYEADDIIGTI 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 + +AE++G V +++ D+D +QLVS + + K E+ D + V++++ I P++ + Sbjct: 117 SKLAEEKGMEVLVVTGDRDALQLVSDKVKVKISKKGITQMEEFDEKAVLERYEITPQQFI 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 L+ L GD DNIPGIP IG KTA LL+E+G++EN+L N S++K K +ENI E A Sbjct: 177 DLKGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLQNLSQLKG-KIKENIENNKELA 235 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +S++L ++ D+PI I E ++D N +L+ LEF LI+ + Sbjct: 236 VMSKRLATIKRDIPIEIDFEEYRVKDFNEEKLLELFNKLEFFSLIDNI 283 >gi|218660193|ref|ZP_03516123.1| DNA polymerase I [Rhizobium etli IE4771] Length = 238 Score = 211 bits (537), Expect = 4e-52, Method: Composition-based stats. Identities = 113/188 (60%), Positives = 143/188 (76%) Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 DIIATY AE G VTI+S+DKDLMQLV+ +YD++K+++I I V++KWG+PPEK Sbjct: 1 DIIATYARQAEATGADVTIVSSDKDLMQLVTINVHMYDSMKDKQIGIPDVVEKWGVPPEK 60 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 M+ LQA+TGDS+DN+PGIPGIG KTAA LL+EYG+L+ +L A+ IKQ KRRE IL E Sbjct: 61 MIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVKRRETILANIE 120 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAAN 298 A+LSR LV LRTDVP+ + L+ L+LE NGP+LI FLK +EFT L RVA DCDA+ Sbjct: 121 MAKLSRDLVRLRTDVPLDLDLDALVLEPQNGPKLIGFLKTMEFTSLTRRVAEVCDCDASA 180 Query: 299 IEPVVLDI 306 IEP V+ I Sbjct: 181 IEPAVVPI 188 >gi|112420958|ref|NP_861524.2| DNA polymerase nu [Homo sapiens] gi|90101282|sp|Q7Z5Q5|DPOLN_HUMAN RecName: Full=DNA polymerase nu gi|66268799|gb|AAY43130.1| polymerase (DNA directed) nu [Homo sapiens] gi|119602945|gb|EAW82539.1| polymerase (DNA directed) nu, isoform CRA_b [Homo sapiens] gi|123241603|emb|CAM16854.1| polymerase (DNA directed) nu [Homo sapiens] gi|123257784|emb|CAM20461.1| polymerase (DNA directed) nu [Homo sapiens] gi|148922010|gb|AAI46298.1| Polymerase (DNA directed) nu [synthetic construct] gi|162319058|gb|AAI56717.1| Polymerase (DNA directed) nu [synthetic construct] gi|162319324|gb|AAI56872.1| Polymerase (DNA directed) nu [synthetic construct] gi|261858178|dbj|BAI45611.1| polymerase (DNA directed) nu [synthetic construct] Length = 900 Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 139/462 (30%), Positives = 249/462 (53%), Gaps = 29/462 (6%) Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 V ++ EN + +L + L KL L ++ L+ P+I +++ ME IQ++++ +++ Sbjct: 393 VNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEK 452 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP------SGAKTKTGQWK 651 SA + L LE+ + ++GE+F ++S QL +ILF KLK S +T ++ Sbjct: 453 TSALLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYP 512 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 +T++ + +P+ K ILE+RQ+ KIKST+ D L + K + + + ++ T+TG Sbjct: 513 STSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 570 Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756 RL++ PN+Q I PI+ + R F+S ++AD+SQIELR Sbjct: 571 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELR 630 Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 IL H++ L ++F+ S D+ + ++ V +E+V+ R K + ++++YG Sbjct: 631 ILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK 690 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 RLA L +P EAA +++ + ++ I ++ Q G V +I GRR I++ Sbjct: 691 ERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHA 750 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933 +R ER A+N +QGSAAD+ + AMI V ++ H L +++ QIHDEL+FEV Sbjct: 751 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVE 810 Query: 934 EEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972 + +I + ++ + S+E+ ++ L+VPLKV++ +W Sbjct: 811 DPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSW 852 >gi|32306441|gb|AAN52116.1| DNA polymerase N [Homo sapiens] Length = 900 Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 139/462 (30%), Positives = 249/462 (53%), Gaps = 29/462 (6%) Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 V ++ EN + +L + L KL L ++ L+ P+I +++ ME IQ++++ +++ Sbjct: 393 VNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEK 452 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP------SGAKTKTGQWK 651 SA + L LE+ + ++GE+F ++S QL +ILF KLK S +T ++ Sbjct: 453 TSALLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYP 512 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 +T++ + +P+ K ILE+RQ+ KIKST+ D L + K + + + ++ T+TG Sbjct: 513 STSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 570 Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756 RL++ PN+Q I PI+ + R F+S ++AD+SQIELR Sbjct: 571 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELR 630 Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 IL H++ L ++F+ S D+ + ++ V +E+V+ R K + ++++YG Sbjct: 631 ILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK 690 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 RLA L +P EAA +++ + ++ I ++ Q G V +I GRR I++ Sbjct: 691 ERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHA 750 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933 +R ER A+N +QGSAAD+ + AMI V ++ H L +++ QIHDEL+FEV Sbjct: 751 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVE 810 Query: 934 EEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972 + +I + ++ + S+E+ ++ L+VPLKV++ +W Sbjct: 811 DPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSW 852 >gi|195053948|ref|XP_001993888.1| GH22128 [Drosophila grimshawi] gi|193895758|gb|EDV94624.1| GH22128 [Drosophila grimshawi] Length = 2218 Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 143/425 (33%), Positives = 223/425 (52%), Gaps = 34/425 (8%) Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 +LL + L+ P+ + ME G L+ + ++ + LE IY+L G +FNL Sbjct: 1804 QLLKFFRELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELHGSRFNL 1863 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 S + + +L K G+ T+ Q LE++ D+P+ + IL +R+LS + S Sbjct: 1864 GSTQAVAKVLGLHRK-------ANGRISTSRQILEKL---DSPMSQLILNYRKLSMLLSK 1913 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--IKTDLGQK-----IRRA 736 L + RVH S+ T TGR++ EPNLQN+ + LG + R A Sbjct: 1914 NMQPLLKCC--QANRVHG-QSITYTATGRISMSEPNLQNVAKDFEIQLGAEKINISCRSA 1970 Query: 737 FISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F K+ L+SAD+ Q+E+RILAH+++ L +V + D+ +AA + +VS Sbjct: 1971 FAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAIAAHWNKIPESEVSE 2030 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH-RFPGIHEYIEKTKNFVR 854 Q+R K I + I+YG+ LA L+ EA I FH + GI Y K F R Sbjct: 2031 QLRNGTKQICYGIVYGMGMRSLAESLKCTEQEA-QMISEQFHLAYAGIKAYAMKVVKFAR 2089 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 NGYVETI GRR + D INS + I+N ER AIN+ IQGSAADI + A++ + K++ + Sbjct: 2090 NNGYVETITGRRRYLDHINSGEPQIKNQAERQAINSTIQGSAADIAKSAILRMEKNIGRY 2149 Query: 915 KL-------ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 + A ++L +HDEL+FEVP ++ ++++ +ME + L VPL+V +K Sbjct: 2150 REKLGLAENAVNLVLHLHDELIFEVPVDKAKKVAKVLSLTMENC----VKLSVPLRVKLK 2205 Query: 968 VSNNW 972 + +W Sbjct: 2206 IGRSW 2210 >gi|327282241|ref|XP_003225852.1| PREDICTED: DNA polymerase theta-like [Anolis carolinensis] Length = 2435 Score = 210 bits (535), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 178/660 (26%), Positives = 290/660 (43%), Gaps = 123/660 (18%) Query: 429 IDLSVHTSQDSTGKNTLTKEILSYLKKFFEN---EHFLKIGHNIKYDKLVLHRYGISMRG 485 I++S + S +N E L +L+ ++ + L + I++ K +L GIS+ G Sbjct: 1775 IEMSASLAPPSLDQNLTVAERLEHLQSCLQDSKRDFSLAMYEFIQHYKTLLKACGISLAG 1834 Query: 486 -FEDIMLMSYVLDSG---RSSHD-IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540 FED + ++LD G RS H+ +AS + L K SI ++ +D + Sbjct: 1835 SFEDPKVACWLLDPGSNERSLHNMVASFLPEELFLLDKIGTGQGNQSIGLNASADHSGRY 1894 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 A S ++ L L L + L ++ +++ P ++ +E+ GI + Sbjct: 1895 RAAVESVLVFHLMDKLSALLQKDNLQDIFHKMEMPNQYCLALLELNGIGFSTAECETQKH 1954 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK----------TG-- 648 + L E IY L+G F+L+ P + ++LF +LK PS ++K TG Sbjct: 1955 VMEAKLSETENQIYQLAGHSFSLTCPDDIAEVLFLELKLPSDGESKMQRGKKTLGYTGRA 2014 Query: 649 -----------QWKTTAQDLEQINCGDNPIIKNILEWRQLSK-----IKSTYADSLPNHI 692 Q+ TT LE++ +P+ ILEWR+++ I + L N I Sbjct: 2015 VVNGNRVRLSKQFSTTKGVLEKLK-ALHPLPGLILEWRKITNAITKVIFPLQREKLLNPI 2073 Query: 693 NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI--------------------------- 725 +R++ S +T TGR++ EPN+QN+P Sbjct: 2074 -LGMERIYPV-SQTNTATGRISFREPNIQNVPKDFEIEMPILVEESPPTQRQHKMFNAPR 2131 Query: 726 -----------------------KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIA 762 K +R AF+ P +++ADYSQ+ELRILAH+ Sbjct: 2132 NRNRKSSVLPCEPKNLTERLTSKKIPFAVSMRHAFVPFPGGLILAADYSQLELRILAHLC 2191 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 L Q + D+ R +AAE + E V +R+ AK I + +IYGI L Q+ Sbjct: 2192 CDRRLLQALNDGADVFRSIAAEWKMMAPEAVGNDLRQQAKQICYGMIYGIGAKSLGEQMG 2251 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + +A+ YI + R+PGI +++ +T Q+G+V+TI GRR + I + Sbjct: 2252 VDEKDASYYIDSFKSRYPGIQKFLRETVKKCNQDGFVQTIMGRRRYLPTIRESNPYKKAQ 2311 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK----------------------- 919 ER A+N +QGSAADI + A +++ K LE A K Sbjct: 2312 AERQAVNTVVQGSAADIVKTATVNIQKQLEALPSAVKSFEHLCSSTQNKWSGMAEKRQIM 2371 Query: 920 -------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +LQ+HDEL++EV E+ + +QI+ H ME A + L V L V +KV ++W Sbjct: 2372 YPKHGGFFILQLHDELLYEVAEDSMIQVAQIVKHEMEHA----VKLSVKLSVKVKVGSSW 2427 >gi|195069821|ref|XP_001997038.1| GH25245 [Drosophila grimshawi] gi|193905759|gb|EDW04626.1| GH25245 [Drosophila grimshawi] Length = 2235 Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 143/425 (33%), Positives = 223/425 (52%), Gaps = 34/425 (8%) Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 +LL + L+ P+ + ME G L+ + ++ + LE IY+L G +FNL Sbjct: 1821 QLLKFFRELEMPIQISLCHMESIGFPAKGHRLQTLFQQMLATMKKLEAKIYELHGSRFNL 1880 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 S + + +L K G+ T+ Q LE++ D+P+ + IL +R+LS + S Sbjct: 1881 GSTQAVAKVLGLHRK-------ANGRISTSRQILEKL---DSPMSQLILNYRKLSMLLSK 1930 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP--IKTDLGQK-----IRRA 736 L + RVH S+ T TGR++ EPNLQN+ + LG + R A Sbjct: 1931 NMQPLLKCC--QANRVHG-QSITYTATGRISMSEPNLQNVAKDFEIQLGAEKINISCRSA 1987 Query: 737 FISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F K+ L+SAD+ Q+E+RILAH+++ L +V + D+ +AA + +VS Sbjct: 1988 FAPMDGKRCLLSADFCQLEMRILAHLSQDQALLKVMNSPQDLFTAIAAHWNKIPESEVSE 2047 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH-RFPGIHEYIEKTKNFVR 854 Q+R K I + I+YG+ LA L+ EA I FH + GI Y K F R Sbjct: 2048 QLRNGTKQICYGIVYGMGMRSLAESLKCTEQEA-QMISEQFHLAYAGIKAYAMKVVKFAR 2106 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 NGYVETI GRR + D INS + I+N ER AIN+ IQGSAADI + A++ + K++ + Sbjct: 2107 NNGYVETITGRRRYLDHINSGEPQIKNQAERQAINSTIQGSAADIAKSAILRMEKNIGRY 2166 Query: 915 KL-------ATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 + A ++L +HDEL+FEVP ++ ++++ +ME + L VPL+V +K Sbjct: 2167 REKLGLAENAVNLVLHLHDELIFEVPVDKAKKVAKVLSLTMENC----VKLSVPLRVKLK 2222 Query: 968 VSNNW 972 + +W Sbjct: 2223 IGRSW 2227 >gi|225848972|ref|YP_002729136.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] gi|225643758|gb|ACN98808.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] Length = 298 Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 117/285 (41%), Positives = 168/285 (58%), Gaps = 5/285 (1%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + L LVDGSS++YRA+YA P LS DG P AI GF ML KL+ + AV Sbjct: 2 DKKLLLVDGSSYLYRAYYALPPLSA-PDGTPTGAIYGFVRMLLKLISTFN----TPYIAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD P T R++IY +YKA R + P L Q+P ++ + GI +EI G+EADDIIAT Sbjct: 57 VFDRPEKTVRHKIYKEYKATRKETPNDLQVQIPKIKEIIKLLGIKILEIPGYEADDIIAT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + AE F V I++ DKD+ QL+ +++ +KEE +D + VI+K+G+ P++ + Sbjct: 117 LSKKAENRSFEVIIVTPDKDMNQLIDQHIKIFNPMKEEIVDTQKVIEKYGVSPQQFIDYL 176 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 L GDSIDNIPGI G+G KTAA LLQE+G+++ IL N ++K K + E +L Sbjct: 177 VLVGDSIDNIPGIKGVGPKTAASLLQEFGSIDRILENKDKLKGKLKESFAAVSKEDIQLV 236 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 R LV L D+ I + +E L + + +L + L F LI + Sbjct: 237 RSLVKLHQDIDIPVEIESLKKDKPDLIKLKEIFEKLGFKSLIKEI 281 >gi|297282109|ref|XP_002802209.1| PREDICTED: DNA polymerase nu-like [Macaca mulatta] Length = 1484 Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 141/462 (30%), Positives = 252/462 (54%), Gaps = 29/462 (6%) Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 V ++ +N ++ +L + L KL L ++ L+ P+I +++ ME IQ++++ +++ Sbjct: 995 VNQNVRDNLKILYRLTMDLCSKLKEYGLWQLFCTLEVPLIPILAVMESHAIQVNKEEMEK 1054 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF------PSGAKTKTGQWK 651 +SA + L LE+ + ++GE+F + S QL +ILF KLK S +T ++ Sbjct: 1055 ISALLGARLKKLEQEAHFVAGERFLIMSSNQLREILFGKLKLHLLSRRNSLPRTGLQKYP 1114 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 +T++ + +P+ K ILE+RQ+ KIKST+ D L + K + + + ++ T+TG Sbjct: 1115 STSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 1172 Query: 712 RLASLEPNLQNI---PI----------KTD--LGQKIRRAFISPPTKKLISADYSQIELR 756 RL++ PN+Q I PI K D L R F+S ++AD+SQIELR Sbjct: 1173 RLSAKHPNIQGISKHPIQITKPKNFKGKEDEILTISPRAMFVSSKGHTFLAADFSQIELR 1232 Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 ILAH++ L ++F+ S D+ + ++ V +E V+ R K + ++++YG Sbjct: 1233 ILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVPMEHVTHADREQTKRVVYAVVYGAGK 1292 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 RLA L +P EAA +++ + ++ I ++ + GYV +I GRR I++ Sbjct: 1293 ERLAACLGVPVQEAAQFLESFLQKYKKIKDFARAAIAQCHRTGYVVSIMGRRRPLPRIHA 1352 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVP 933 +R ER A+N +QGSAAD+ + AMI V ++ + L +++ QIHDEL+FEV Sbjct: 1353 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIRVFTAVATSRTLTARLVAQIHDELLFEVE 1412 Query: 934 EEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972 + +I + ++ + S+E+ ++ L+VPLKV++ +W Sbjct: 1413 DPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSW 1454 >gi|15606735|ref|NP_214115.1| DNA polymerase I [Aquifex aeolicus VF5] gi|17366200|sp|O67550|EX53_AQUAE RecName: Full=5'-3' exonuclease gi|2983968|gb|AAC07515.1| DNA polymerase I 3'-5' exo domain [Aquifex aeolicus VF5] Length = 289 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 121/289 (41%), Positives = 176/289 (60%), Gaps = 15/289 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+++DGSSF+YR+F+A P LS G P NAI GF ML+ L++ R + + V+FD Sbjct: 4 LYILDGSSFVYRSFFALPPLSTSK-GFPTNAIYGFLRMLFSLIKKERPQ----YLVVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 PA T R +IY DYK RPK P+ L Q+P+++ + GIP +E+ G+EADD+IA Y Sbjct: 59 APAKTKREKIYADYKKQRPKAPDPLKVQIPVIKEILKLAGIPLLELPGYEADDVIA---Y 115 Query: 127 IAEK---EGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 +AEK +GF V I S DKDL+QLVS + + + +E E VIKK+G+ P+K+ Sbjct: 116 LAEKFSQKGFKVKIYSPDKDLLQLVSENVLVINPMNDEVFTKERVIKKFGVEPQKIPDYL 175 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GD +DN+PGI G+G KTA +L++YG++ENIL N + +++ R E LS Sbjct: 176 ALVGDKVDNVPGIEGVGPKTAINILKKYGSVENILKNWEKFQREFPRAK----KEDLELS 231 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 KLV L TD+ I + E L ++ + +L L+ LE L+ V + Sbjct: 232 YKLVKLYTDLDIELSEEDLKIKRPDLNKLKQKLQELEMKSLLKEVDKIF 280 >gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279] gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279] Length = 1273 Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 215/369 (58%), Gaps = 33/369 (8%) Query: 439 STGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLH-RYGISMRGFEDIMLMSYVLD 497 + GK + L LKKF E I + D VL + G+ + +D ML++Y+ D Sbjct: 338 AGGKVYRGQPSLQELKKFPE------IRSMVAKDLSVLALKEGVWVPPGDDPMLLAYLYD 391 Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 S+ D AS +++ + D SD E + LW L+ Sbjct: 392 P--SNSDPASTVRRYGAG---------------DWGSDPG------ERAQAAHTLWETLQ 428 Query: 558 PKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL 616 ++ K+ +Y++++KP+ V++++E GI ++ + L Q+S E++K + LE I+ L Sbjct: 429 SRIGENPKIEWLYQQIEKPLSAVLARIEARGISLNAEYLLQLSEELAKEISYLEAEIHRL 488 Query: 617 SGEKFNLSSPKQLGDILFTKLKFPS-GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWR 675 +G FN++S QL +L+ +LK + G KT+TG+ T A LE++ G +PII+ IL +R Sbjct: 489 AGRSFNVNSRDQLEVVLYDELKLSAPGRKTQTGKRSTAASALEEL-LGQHPIIERILTYR 547 Query: 676 QLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRR 735 +L+K+KSTY D LP I+ +T R+HT ++ T TGRL+S++PNLQNIP++T++G++IR+ Sbjct: 548 ELTKLKSTYLDPLPKLIHPKTGRLHTRFNQTGTATGRLSSVDPNLQNIPVRTEIGRRIRK 607 Query: 736 AFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 AF + P +L+ ADYSQIELR+LAH++ L VF DIH AA +FG+ +KV Sbjct: 608 AFRAAPGMRLVVADYSQIELRVLAHLSGDENLINVFREGRDIHTQTAAWMFGLEPDKVGA 667 Query: 796 QMRRHAKTI 804 + RR AK + Sbjct: 668 EQRRAAKCL 676 Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 154/288 (53%), Gaps = 8/288 (2%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + ++LVDG YR+++A L+ G P AI GF L KLL+ I Sbjct: 16 LPRPDRIWLVDGHHLAYRSYFAFEKLATSR-GEPTQAIFGFLRTLLKLLKEDGDCVI--- 71 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD P TFR++ + +YKA R P+ PQL ++ G+ +E+ G+EADD+ Sbjct: 72 --VVFDPPTRTFRHDAFEEYKAGRAATPDDFHPQLEKIKELVDLMGLQRLEVPGYEADDV 129 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 I T AE+EG+ V I++ D+D QL+S + + + V +K+G+ + V Sbjct: 130 IGTLAKKAEQEGYPVRILTGDRDSFQLLSEAVQVM-LPDGRLMHPQAVQEKYGVSVAQWV 188 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 ++L GDS DN+PG GIG KTAA LLQE+G+LE + N + K R ++ E + Sbjct: 189 DYRSLVGDSSDNLPGAKGIGEKTAAKLLQEWGSLEGLYANLEALSPKI-RASLEESRDNV 247 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 +LSR L ++ TD+P+ + + + L L+ LEF ++ + Sbjct: 248 QLSRTLSLIHTDLPLELDFRDCHRREPDRGALREALEKLEFGSILREL 295 Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 68/172 (39%), Positives = 103/172 (59%), Gaps = 6/172 (3%) Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 TINF ++YG+S RL+ +L I +EA +I+RYF +P + E+IE+ RQ GYVET+ Sbjct: 1106 TINFGVLYGMSAHRLSNELSISYAEAEGFIERYFASYPKVREWIERVLADARQTGYVETM 1165 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 FGRR ++ S S+R ER A N P+QG+AAD+ + AM+ + LE L ++L Sbjct: 1166 FGRRRFVADLGSRVRSVREAAERMAFNMPVQGTAADLMKLAMVKLQPELE--PLEAHLVL 1223 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q+HDEL+ E P ++ + ++ M++A L VPL+V + NW E Sbjct: 1224 QVHDELLVEAPADKAEAVAGVVREVMQQAW----ALAVPLEVGTGIGENWLE 1271 >gi|194209373|ref|XP_001489138.2| PREDICTED: polymerase (DNA directed) nu [Equus caballus] Length = 900 Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 244/462 (52%), Gaps = 30/462 (6%) Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 V ++ N ++ +L + L +L + L ++ L+ P+I +++ ME IQ+++D +++ Sbjct: 394 VNQNVCANLRILYRLTMGLCSQLKIYGLWQLFCTLELPLIPILAVMESHNIQVNKDEMER 453 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF----PSGAKTKTGQWKTT 653 SA + L LE+ + ++GE+F ++S QL +ILF KLK P KTG Sbjct: 454 TSAVLGSRLKELEQEAHFVAGEQFLITSNNQLREILFGKLKLHLLRPRETLPKTGLQGHL 513 Query: 654 AQDLEQINCGDN--PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 + +N N P+ K ILE+RQ+ KIKST+ D L + K + + + ++ T+TG Sbjct: 514 STSEAMLNVLQNFHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 571 Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756 RL++ PN+Q I PI+ Q R F+S ++AD+SQIELR Sbjct: 572 RLSAKRPNIQGISKHPIQITKPQNFKGKEDDILTISPRTMFVSSEGHTFLAADFSQIELR 631 Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 ILAH++ L ++F+ S D+ + ++ + E V+ R K + +S++YG Sbjct: 632 ILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPSECVTHVEREQTKKVVYSVVYGAGK 691 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 RLA L + EAA +++ + ++ I ++ + T Q GYV +I GRR I + Sbjct: 692 ERLAACLGVTVQEAARFLE-FLQKYKKIKDFAQATIARCHQTGYVASIMGRRRPLPRIRA 750 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVP 933 +R ER A+N +QGSAAD+ + AMI + ++ L +++ QIHDEL+FEV Sbjct: 751 QDQQLRAQAERQAVNFVVQGSAADLCKMAMIHIFAAVATSPTLTARLVAQIHDELLFEVE 810 Query: 934 EEEITTASQIIVHSMEK---ACLPKINLRVPLKVNIKVSNNW 972 + ++ S ++ +ME ++ L+VPLKV++ +W Sbjct: 811 DSQVPEFSALVRGTMESLQHVQALELQLQVPLKVSLSAGRSW 852 >gi|118083459|ref|XP_416549.2| PREDICTED: similar to DNA polymerase theta [Gallus gallus] Length = 2620 Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 175/663 (26%), Positives = 296/663 (44%), Gaps = 140/663 (21%) Query: 442 KNTLTKEILSYLKKFFE--NEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDS 498 KN E L +L+ + + E L + + I++ K ++ GIS+ G FED + ++LDS Sbjct: 1962 KNLSVTERLRHLQLYLQEKQERSLVMYNFIQHYKTLVMACGISLEGSFEDPKVACWLLDS 2021 Query: 499 GRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEH------AIENSNVILQL 552 G + ++ +L +L+ + + + S ++H AIE S +I + Sbjct: 2022 GSKECTLHNMVTNFLP-NELPLLEGVGTGQGVQSLGLSSSEDHSGRYRAAIE-SVLIFNI 2079 Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612 L +L E L V+ +++ P ++ +E+ GI + + L +E Sbjct: 2080 MNQLHSELRKENLTDVFSKVEMPNHYCLALLELNGIGFSTAAYETQKQVMQAKLTEIETK 2139 Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK-----------------------TGQ 649 Y L+G F+L+SP + ++LF +LK P K + Q Sbjct: 2140 AYQLAGHSFSLTSPDDVAEVLFLELKLPQNGDVKVQGNKKTLGYTRRTSIKGNRVRLSKQ 2199 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR------TQRVHTFY 703 + TT LE++ +P+ ILEWR+++ S P KR +R++ Sbjct: 2200 FSTTKDVLEKLK-PLHPLPGLILEWRRINSAISKVV--FPLQREKRFNSALGMERIYPV- 2255 Query: 704 SLASTMTGRLASLEPNLQNI----------------PIKT----------------DLGQ 731 S T TGR++ EPN+QN+ P +T LG+ Sbjct: 2256 SQTHTATGRVSFAEPNIQNVPRDFEIEMPIVVEESPPFRTHVYSCAVSRSLLNFERGLGR 2315 Query: 732 K---------------------------IRRAFISPPTKKLISADYSQIELRILAHIAKI 764 K +R AF+ P +++ADY Q+ELRILAH ++ Sbjct: 2316 KHSSVLPSGVNTWTADRTERRGIPFFVSMRHAFVPFPGGFILAADYCQLELRILAHFSRD 2375 Query: 765 TPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L + F D+ + +AAE ++ E V R+ AK I + IIYGI L Q+ I Sbjct: 2376 CRLIEAFNKGADVFKSIAAEWKMIDSEAVGDSTRQQAKQICYGIIYGIGAKSLGEQMGID 2435 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 ++AA+YI+ + R+ GI +++++T + R++G+V+TI GRR + I I+ E Sbjct: 2436 DNKAANYIESFKSRYTGIQKFLKETVSNCRRDGFVQTILGRRRYLPAIRDSNPYIKAHAE 2495 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLE--------------------DHKLATK----- 919 R A+N +QGSAADI + A +++ + LE +L+ K Sbjct: 2496 RQAVNTTVQGSAADIVKTATVNIQRRLEALSSVNKSHGHLENSFQRDKTGRLSRKRNREM 2555 Query: 920 --------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 +LQ+HDEL++EV E+++ +QI+ H ME A + L V L V +K+ + Sbjct: 2556 LHPISGGFFILQLHDELLYEVAEDDVIQVAQIVKHEMENA----VKLSVKLNVKVKIGPS 2611 Query: 972 WQE 974 W E Sbjct: 2612 WGE 2614 >gi|119602944|gb|EAW82538.1| polymerase (DNA directed) nu, isoform CRA_a [Homo sapiens] Length = 891 Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 138/459 (30%), Positives = 244/459 (53%), Gaps = 32/459 (6%) Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 V ++ EN + +L + L KL L ++ L+ P+I +++ ME IQ++++ +++ Sbjct: 393 VNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEK 452 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP------SGAKTKTGQWK 651 SA + L LE+ + ++GE+F ++S QL +ILF KLK S +T ++ Sbjct: 453 TSALLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYP 512 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 +T++ + +P+ K ILE+RQ+ KIKST+ D L + K + + + ++ T+TG Sbjct: 513 STSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 570 Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756 RL++ PN+Q I PI+ + R F+S ++AD+SQIELR Sbjct: 571 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELR 630 Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 IL H++ L ++F+ S D+ + ++ V +E+V+ R K + ++++YG Sbjct: 631 ILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK 690 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 RLA L +P EAA +++ + ++ I ++ Q G V +I GRR I++ Sbjct: 691 ERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHA 750 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933 +R ER A+N +QGSAAD+ + AMI V ++ H L +++ QIHDEL+FEV Sbjct: 751 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVE 810 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + +I + ++ +ME +VPLKV++ +W Sbjct: 811 DPQIPECAALVRRTMESL------EQVPLKVSLSAGRSW 843 >gi|218515593|ref|ZP_03512433.1| DNA polymerase I [Rhizobium etli 8C-3] Length = 161 Score = 207 bits (527), Expect = 7e-51, Method: Composition-based stats. Identities = 97/161 (60%), Positives = 122/161 (75%), Gaps = 3/161 (1%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA-- 58 M+K +HLFLVDGS FI+RAF+A P L+RK DGLPV A++GFCNMLWKLL+++R + Sbjct: 1 MKKGDHLFLVDGSGFIFRAFHALPPLTRKTDGLPVGAVSGFCNMLWKLLRDARNTDVGVT 60 Query: 59 -SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H AVIFDY A TFR ++Y YKANR PE L+PQ L+R AT+AF +P IE +GFEA Sbjct: 61 PTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEGFEA 120 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTV 158 DDIIATY AE G VTI+S+DKDLMQLV+P +YD++ Sbjct: 121 DDIIATYARQAEAVGADVTIVSSDKDLMQLVTPNVHMYDSM 161 >gi|153792006|ref|NP_001093496.1| DNA polymerase nu [Danio rerio] gi|108735435|gb|ABG00195.1| DNA polymerase nu [Danio rerio] Length = 1146 Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 141/458 (30%), Positives = 240/458 (52%), Gaps = 34/458 (7%) Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 I N +++ +L L KL + L +Y +++ MI V++ ME + +D++ LK+ S + Sbjct: 678 ISNLSLLHKLMEELHYKLRTQGLWQLYSGIEQKMIPVLAAMESYKMHVDKEALKKTSEML 737 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL---------KFPSGAKTKTGQWKTT 653 L LE+ + +G+KF +SS QL ILF KL K P K + +T Sbjct: 738 GSKLKQLEQEAHQAAGQKFLVSSSAQLRLILFEKLRLHELCENKKLPKTVKQQQSTSETA 797 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 L++++ P+ K ILE+RQ+ KIK+T+ D + + K + + ++ ST++GRL Sbjct: 798 LLQLQKLH----PLPKIILEYRQIHKIKTTFVDGILSCTRKTF--ISSTWNQTSTVSGRL 851 Query: 714 ASLEPNLQ---NIPIKTDLGQKI------------RRAFISPPTKKLISADYSQIELRIL 758 ++ PN Q +P++ Q I R FI +SAD+ Q+ELR+L Sbjct: 852 SAKHPNFQALPKLPLQISKKQYIHGKASDIVTVHPRAMFIPREGWTFLSADFCQVELRLL 911 Query: 759 AHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 AH++ L ++F++ D M+AA+ GV+ ++VS + R AK I +S++YG RL Sbjct: 912 AHLSADPQLLRIFQSPEADAFTMLAAQWKGVSEDRVSLEDREQAKRIVYSVVYGAGRERL 971 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 + L + EA+ + + + + +I+ T + +G+V +I GRR I+S Sbjct: 972 SGILGVSAEEASRFQDSFLKTYREVPAFIQHTIQHCQSHGFVRSIMGRRRFLPHIHSADW 1031 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 S+RN ER A+N +QGSAAD+ + AMI + + +++ QIHDEL+FEV ++ Sbjct: 1032 SLRNQAERQAVNFVLQGSAADLAKLAMIRICSQVSSDSQTARLVAQIHDELLFEVEISQL 1091 Query: 938 TTASQIIVHSMEKAC---LPKINLRVPLKVNIKVSNNW 972 + ++ +ME +NL VPLKV + +W Sbjct: 1092 DQFAALVKKTMESLQHIEYLNVNLSVPLKVLLSTGRSW 1129 >gi|73951787|ref|XP_545922.2| PREDICTED: similar to polymerase (DNA directed) nu [Canis familiaris] Length = 947 Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 134/452 (29%), Positives = 242/452 (53%), Gaps = 29/452 (6%) Query: 548 VILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 ++ +L + L +L V L ++ L+ P+I +++ ME I+++++ +++ SA + L Sbjct: 403 ILYRLTMGLCSQLKVYGLWQLFCTLELPLIPILAVMESHSIRVNREEMERTSALLGSRLK 462 Query: 608 SLEENIYDLSGEKFNLSSPKQLGDILFTKLKF----PSGAKTKTGQWKTTAQDLEQINCG 663 LE+ + ++GE+F ++S QL +ILF KLK P +TG + + +N Sbjct: 463 ELEQEAHFVAGEQFLITSNNQLQEILFGKLKLHLMSPMETLPRTGLQRLPSTSEAVLNAL 522 Query: 664 DN--PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 + P+ K ILE+R++ K KS + D L + K + + + ++ T+TGRL++ PN+Q Sbjct: 523 QDLHPLPKIILEYRRVHKTKSAFVDGLLAFVRKGS--ISSMWNQTGTVTGRLSARHPNIQ 580 Query: 722 NI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELRILAHIAKITP 766 I PIK Q R F++P + ++AD+SQIELRILAH++ Sbjct: 581 GISKHPIKITKPQNFKGTEGTMLTISPRSMFVAPESHTFLAADFSQIELRILAHLSGDPE 640 Query: 767 LYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 L ++F S D+ + ++ + E V+ R K + +S++YG RLA L + Sbjct: 641 LLKLFRESGRDDVFSTLTSQWKDIPPECVTYADREQTKKVVYSVVYGAGKERLAACLGVT 700 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 EAA +++ + ++ I ++++ T Q GYV +I GRR ++ +R E Sbjct: 701 VQEAAQFLESFLQKYKKIKDFVQTTIAQCHQTGYVASIMGRRRPLPRVHDQDQQLRAQAE 760 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTASQI 943 R A+N +QGSAAD+ + AMI + +++ L +++ QIHDEL+FEV + +I + + Sbjct: 761 RQAVNFVVQGSAADLCKMAMIRIFRAVATSPTLTARLVAQIHDELLFEVEDSQIPEFAAL 820 Query: 944 IVHSMEKACLPK---INLRVPLKVNIKVSNNW 972 + +ME + + L+VPLKV++ +W Sbjct: 821 VRGTMESLQYVRALGLQLQVPLKVSLSAGPSW 852 >gi|4105277|gb|AAD02338.1| putative DNA polymerase [Homo sapiens] Length = 579 Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 140/459 (30%), Positives = 243/459 (52%), Gaps = 32/459 (6%) Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 V ++ EN + +L + L KL L ++ L+ P+I +++ ME IQ++++ +++ Sbjct: 26 VNQNVRENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPILAVMESHAIQVNKEEMEK 85 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF----PSGAKTKTGQWKTT 653 SA + L LE+ + ++GE+F ++S QL +ILF KLK + +TG K Sbjct: 86 TSALLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKLHLLSQRNSLPRTGLQKYP 145 Query: 654 AQDLEQINCGDN--PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 + E +N + P+ K ILE+RQ+ KIKST+ D L + K + + + ++ T+TG Sbjct: 146 STVSEALNALRDLHPLPKIILEYRQVHKIKSTFVDGLLACMKKGS--ISSTWNQTGTVTG 203 Query: 712 RLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELR 756 RL++ PN+Q I PI+ + R F+S ++AD+SQIELR Sbjct: 204 RLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSSKGHTFLAADFSQIELR 263 Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 IL H++ L ++F+ S D+ + ++ V +E+V+ R K + ++++YG Sbjct: 264 ILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADREQTKKVVYAVVYGAGK 323 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 RLA L +P EAA +++ + ++ I ++ Q G V +I GRR I++ Sbjct: 324 ERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGCVVSIMGRRRPLPRIHA 383 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDELVFEVP 933 +R ER A+N +QGSAAD+ + AMI V ++ H L +++ QIHDEL+FEV Sbjct: 384 HDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLTARLVAQIHDELLFEVE 443 Query: 934 EEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + +I + ++ +ME +VPLKV++ +W Sbjct: 444 DPQIPECAALVRRTMESL------EQVPLKVSLSAGRSW 476 >gi|32306445|gb|AAN39838.1| DNA polymerase Q [Mus musculus] Length = 2587 Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 168/622 (27%), Positives = 273/622 (43%), Gaps = 122/622 (19%) Query: 469 IKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527 I+ K++L GIS+ +ED + ++LD + SI +L + +L+ ++ Sbjct: 1966 IQTYKVLLLSCGISLEPSYEDPKVACWLLDPDSKEPTLHSIVTSFLPH-ELALLEGMETG 2024 Query: 528 IPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 I + + EH A S +I L L E L ++ +++ P ++ Sbjct: 2025 PGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKENLHDIFCKVEMPSQYCLAL 2084 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-- 640 +E+ GI + + L ++E Y L+G F+ +S + +LF +LK P Sbjct: 2085 LELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFTSADDIAQVLFLELKLPPN 2144 Query: 641 --------------------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK- 679 SG + + G+ +T++D+ G +P+ ILEWR++S Sbjct: 2145 GEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPLPGLILEWRRISNA 2204 Query: 680 -IKSTYADSLPNHINK--RTQRVHTFYSLASTMTGRLASLEPNLQNIP------------ 724 K + H+N R +R++ S + T TGR+ EPN+QN+P Sbjct: 2205 ITKVVFPLQREKHLNPLLRMERIYPV-SQSHTATGRITFTEPNIQNVPRDFEIKMPTLVR 2263 Query: 725 -----------IKTDLGQ----------------------------KIRRAFISPPTKKL 745 +GQ +R AF+ P + Sbjct: 2264 ESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSVSMRHAFVPFPGGLI 2323 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 ++ADYSQ+ELRILAH+++ L QV D+ R +AAE + + V +R+HAK I Sbjct: 2324 LAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPDAVGDDLRQHAKQIC 2383 Query: 806 FSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGR 865 + IIYG+ L Q+ I ++AA YI + R+ GI+ ++ T R+NG+VETI GR Sbjct: 2384 YGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMRDTVKNCRKNGFVETILGR 2443 Query: 866 RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATK------ 919 R + I + ER AIN +QGSAADI + A +++ K LE + K Sbjct: 2444 RRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLETFRSTFKSHGHRE 2503 Query: 920 ---------------------------MLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 +LQ+HDEL++EV EE++ +QI+ + ME A Sbjct: 2504 SMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMECA- 2562 Query: 953 LPKINLRVPLKVNIKVSNNWQE 974 I L V LKV +K+ +W E Sbjct: 2563 ---IKLSVKLKVKVKIGASWGE 2581 >gi|188997399|ref|YP_001931650.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1] gi|188932466|gb|ACD67096.1| 5'-3' exonuclease [Sulfurihydrogenibium sp. YO3AOP1] Length = 299 Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 116/289 (40%), Positives = 174/289 (60%), Gaps = 7/289 (2%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N + L+DGSS++YRA+YA P L+ DG P A+ GF ML K L + AV Sbjct: 2 KNKVLLIDGSSYLYRAYYALPPLTA-PDGRPTGAVYGFIRMLLKTLSVFN----TPYVAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD P T R+E + +YKA R + P+ L Q+P+++ Q GI +EI G+EADDIIAT Sbjct: 57 AFDLPGKTLRHEKFSEYKATRKETPDPLKQQIPILKEIIQLLGIKILEIPGYEADDIIAT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + AEKEG+ I++ DKD+ QL+S +++ VKEE +D E + +K+GI P++ + Sbjct: 117 LSKKAEKEGYEAIIVTPDKDMNQLISDNIKIFNPVKEELLDKEKIKEKYGIHPQQFIDYL 176 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK-KRRENILEYAETARL 242 + GD++DNIPGI GIG KTAA LLQE+G+LENIL N ++K K K L+ + R+ Sbjct: 177 TMIGDAVDNIPGIKGIGPKTAAALLQEFGSLENILENVDKLKGKLKESFKELDKEQLQRM 236 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 ++++ L ++ I I +E L + +L + L F L+ V + Sbjct: 237 -KEIIKLDANIEINIKIEDLKKSKPDLEKLKQIFQELGFKSLLKDVEKS 284 >gi|94961603|gb|ABF48183.1| family A DNA polymerase [Trichococcus patagoniensis] Length = 241 Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 104/241 (43%), Positives = 157/241 (65%), Gaps = 2/241 (0%) Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 TA D+ + PI+++IL +RQL+K++STY + L I T ++HT Y T TGR Sbjct: 1 TAVDVLEKLQAQAPIVEHILNYRQLAKLQSTYVEGLLKFIKPETGKIHTRYQQTLTQTGR 60 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771 L+S++PNLQNIPI+ + G+KIR+AF+ KL ++DYSQIELR+LAHI+ L + F Sbjct: 61 LSSVDPNLQNIPIRMEEGRKIRQAFVPQQEGWKLFASDYSQIELRVLAHISGDEHLREAF 120 Query: 772 ENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 DIH A +FG+ N E V+ +RR AK +NF ++YGIS + L+ L I R A + Sbjct: 121 LEGQDIHTSTAMHVFGIENPEDVTANLRRQAKAVNFGVVYGISDYGLSQNLNITRKAAQE 180 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I RYF ++PG+ +++E ++NGYVET+F RR + +I++ ++R+ ER AIN+ Sbjct: 181 FIDRYFDKYPGVKQFMEDIVKEAKENGYVETLFHRRRYLPDIHNRNFNLRSFAERTAINS 240 Query: 891 P 891 P Sbjct: 241 P 241 >gi|297672987|ref|XP_002814560.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Pongo abelii] Length = 1585 Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 143/468 (30%), Positives = 254/468 (54%), Gaps = 34/468 (7%) Query: 534 SDSQVQEHAIENSN-VILQLWLLL-RPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 S +QVQ EN++ +I +L L+L P L ++ L+ P+I +++ ME IQ++ Sbjct: 1075 SSAQVQG---ENADTIIFKLTLILFLPIKQGYGLWQLFCTLELPLIPILAVMESHAIQVN 1131 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF------PSGAKT 645 ++ +++ SA + L LE+ + ++GE F ++S QL +ILF KLK S +T Sbjct: 1132 KEEMEKTSALLGARLKELEQEAHFVAGEPFLITSNNQLREILFGKLKLHLLSQRNSLPRT 1191 Query: 646 KTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 ++ +T++ + +P+ K ILE+RQ+ KIKST+ D L K + + + ++ Sbjct: 1192 GLQKYPSTSEAVLNALRDFHPLPKIILEYRQVHKIKSTFVDGLLACTKKGS--ISSTWNQ 1249 Query: 706 ASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADY 750 T+TGRL++ PN+Q I PI+ + R F+S ++AD+ Sbjct: 1250 TGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKEDKTLTISPRAMFVSSKGHTFLAADF 1309 Query: 751 SQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 SQIELRILAH++ L ++F+ + D+ + ++ V +E+V+ R K + +++ Sbjct: 1310 SQIELRILAHLSGDPELLKLFQEAERDDVFSTLTSQWKDVPMEQVTHADREQTKKVVYAV 1369 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YG RLA L +P EAA +++ + ++ I ++ Q GYV +I GRR Sbjct: 1370 VYGAGKERLAACLGVPVQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGYVVSIMGRRRP 1429 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDE 927 I++ +R ER A+N +QGSAAD+ + AMI V ++ + L +++ QIHDE Sbjct: 1430 LPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASRTLTARLVAQIHDE 1489 Query: 928 LVFEVPEEEITTASQII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972 L+FEV + +I + ++ + S+E+ ++ L+VPLKV++ +W Sbjct: 1490 LLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSW 1537 >gi|148665537|gb|EDK97953.1| polymerase (DNA directed), theta, isoform CRA_c [Mus musculus] Length = 2273 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 174/640 (27%), Positives = 280/640 (43%), Gaps = 122/640 (19%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I+ K++L GIS+ +ED + ++LD + SI Sbjct: 1634 SCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVACWLLDPDSKEPTLHSIV 1693 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++ I + + EH A S +I L L E Sbjct: 1694 TSFLPH-ELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1752 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L ++ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 1753 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFT 1812 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + +LF +LK P SG + + G+ +T++D+ Sbjct: 1813 SADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLK 1872 Query: 663 GDNPIIKNILEWRQLSK--IKSTYADSLPNHINK--RTQRVHTFYSLASTMTGRLASLEP 718 G +P+ ILEWR++S K + H+N R +R++ S + T TGR+ EP Sbjct: 1873 GLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPV-SQSHTATGRITFTEP 1931 Query: 719 NLQNIP-----------------------IKTDLGQ------------------------ 731 N+QN+P +GQ Sbjct: 1932 NIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGV 1991 Query: 732 ----KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 +R AF+ P +++ADYSQ+ELRILAH+++ L QV D+ R +AAE Sbjct: 1992 PFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKM 2051 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 + + V +R+HAK I + IIYG+ L Q+ I ++AA YI + R+ GI+ ++ Sbjct: 2052 IEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMR 2111 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 T R+NG+VETI GRR + I + ER AIN +QGSAADI + A +++ Sbjct: 2112 DTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNI 2171 Query: 908 HKSLE-------DHKLATKML--------------------------LQIHDELVFEVPE 934 K LE H ML LQ+HDEL++EV E Sbjct: 2172 QKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAE 2231 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E++ +QI+ + ME A I L V LKV +K+ +W E Sbjct: 2232 EDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2267 >gi|187954717|gb|AAI41102.1| DNA polymerase N [Mus musculus] Length = 866 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 144/476 (30%), Positives = 251/476 (52%), Gaps = 31/476 (6%) Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 K S + S + + ++ N ++ L + L KL L ++ L+ P+I +++ ME Sbjct: 381 KPSSTFREASRNTLSQNVCMNLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVME 440 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 I +D++ +++ SA + L LE+ + ++GE+F + S QL +ILF KLK ++ Sbjct: 441 NHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQ 500 Query: 645 TK----TG---QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 K TG Q T+ L + +P+ K ILE+RQ+ KIKST+ D L ++ K + Sbjct: 501 RKHLPRTGLQNQLSTSEAMLNSLQ-DLHPLPKLILEYRQVHKIKSTFIDGLLAYMKKGS- 558 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPT 742 + + ++ T+TGRL++ PN+Q I PIK R F+S Sbjct: 559 -ISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEG 617 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRH 800 ++AD+SQIELRILAH++ L ++F+ S D+ + ++ + IE+V+ R Sbjct: 618 HTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQ 677 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 K + +S++YG RLA L + EA +++R+ ++ I ++ + GYV Sbjct: 678 TKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIGQCHSAGYVT 737 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATK 919 +I GRR I + +R ER A+N +QGSAAD+ + AMI + ++ L + Sbjct: 738 SILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTAR 797 Query: 920 MLLQIHDELVFEVPEEEITTASQI---IVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ QIHDEL+FEV + ++ + + I+ S+++ ++ L+VPLKVN+ V +W Sbjct: 798 LVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 853 >gi|30387615|ref|NP_084253.1| DNA polymerase theta isoform 1 [Mus musculus] gi|29825886|gb|AAL77225.1| DNA polymerase theta [Mus musculus] gi|148665535|gb|EDK97951.1| polymerase (DNA directed), theta, isoform CRA_a [Mus musculus] gi|187953885|gb|AAI38361.1| Polymerase (DNA directed), theta [Mus musculus] gi|187956948|gb|AAI57901.1| Polymerase (DNA directed), theta [Mus musculus] Length = 2544 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 174/640 (27%), Positives = 280/640 (43%), Gaps = 122/640 (19%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I+ K++L GIS+ +ED + ++LD + SI Sbjct: 1905 SCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVACWLLDPDSKEPTLHSIV 1964 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++ I + + EH A S +I L L E Sbjct: 1965 TSFLPH-ELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 2023 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L ++ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 2024 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFT 2083 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + +LF +LK P SG + + G+ +T++D+ Sbjct: 2084 SADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLK 2143 Query: 663 GDNPIIKNILEWRQLSK--IKSTYADSLPNHINK--RTQRVHTFYSLASTMTGRLASLEP 718 G +P+ ILEWR++S K + H+N R +R++ S + T TGR+ EP Sbjct: 2144 GLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPV-SQSHTATGRITFTEP 2202 Query: 719 NLQNIP-----------------------IKTDLGQ------------------------ 731 N+QN+P +GQ Sbjct: 2203 NIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGV 2262 Query: 732 ----KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 +R AF+ P +++ADYSQ+ELRILAH+++ L QV D+ R +AAE Sbjct: 2263 PFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKM 2322 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 + + V +R+HAK I + IIYG+ L Q+ I ++AA YI + R+ GI+ ++ Sbjct: 2323 IEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMR 2382 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 T R+NG+VETI GRR + I + ER AIN +QGSAADI + A +++ Sbjct: 2383 DTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNI 2442 Query: 908 HKSLE-------DHKLATKML--------------------------LQIHDELVFEVPE 934 K LE H ML LQ+HDEL++EV E Sbjct: 2443 QKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAE 2502 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E++ +QI+ + ME A I L V LKV +K+ +W E Sbjct: 2503 EDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2538 >gi|148665538|gb|EDK97954.1| polymerase (DNA directed), theta, isoform CRA_d [Mus musculus] Length = 2398 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 174/640 (27%), Positives = 280/640 (43%), Gaps = 122/640 (19%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I+ K++L GIS+ +ED + ++LD + SI Sbjct: 1759 SCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVACWLLDPDSKEPTLHSIV 1818 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++ I + + EH A S +I L L E Sbjct: 1819 TSFLPH-ELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1877 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L ++ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 1878 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFT 1937 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + +LF +LK P SG + + G+ +T++D+ Sbjct: 1938 SADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLK 1997 Query: 663 GDNPIIKNILEWRQLSK--IKSTYADSLPNHINK--RTQRVHTFYSLASTMTGRLASLEP 718 G +P+ ILEWR++S K + H+N R +R++ S + T TGR+ EP Sbjct: 1998 GLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPV-SQSHTATGRITFTEP 2056 Query: 719 NLQNIP-----------------------IKTDLGQ------------------------ 731 N+QN+P +GQ Sbjct: 2057 NIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGV 2116 Query: 732 ----KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 +R AF+ P +++ADYSQ+ELRILAH+++ L QV D+ R +AAE Sbjct: 2117 PFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKM 2176 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 + + V +R+HAK I + IIYG+ L Q+ I ++AA YI + R+ GI+ ++ Sbjct: 2177 IEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMR 2236 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 T R+NG+VETI GRR + I + ER AIN +QGSAADI + A +++ Sbjct: 2237 DTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNI 2296 Query: 908 HKSLE-------DHKLATKML--------------------------LQIHDELVFEVPE 934 K LE H ML LQ+HDEL++EV E Sbjct: 2297 QKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAE 2356 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E++ +QI+ + ME A I L V LKV +K+ +W E Sbjct: 2357 EDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2392 >gi|226823286|ref|NP_001152841.1| DNA polymerase theta isoform 2 [Mus musculus] gi|27464957|gb|AAN64234.1| DNA polymerase theta short isoform [Mus musculus] Length = 2265 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 174/640 (27%), Positives = 280/640 (43%), Gaps = 122/640 (19%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I+ K++L GIS+ +ED + ++LD + SI Sbjct: 1626 SCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVACWLLDPDSKEPTLHSIV 1685 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++ I + + EH A S +I L L E Sbjct: 1686 TSFLPH-ELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1744 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L ++ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 1745 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFT 1804 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + +LF +LK P SG + + G+ +T++D+ Sbjct: 1805 SADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLK 1864 Query: 663 GDNPIIKNILEWRQLSK--IKSTYADSLPNHINK--RTQRVHTFYSLASTMTGRLASLEP 718 G +P+ ILEWR++S K + H+N R +R++ S + T TGR+ EP Sbjct: 1865 GLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPV-SQSHTATGRITFTEP 1923 Query: 719 NLQNIP-----------------------IKTDLGQ------------------------ 731 N+QN+P +GQ Sbjct: 1924 NIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGV 1983 Query: 732 ----KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 +R AF+ P +++ADYSQ+ELRILAH+++ L QV D+ R +AAE Sbjct: 1984 PFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKM 2043 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 + + V +R+HAK I + IIYG+ L Q+ I ++AA YI + R+ GI+ ++ Sbjct: 2044 IEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMR 2103 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 T R+NG+VETI GRR + I + ER AIN +QGSAADI + A +++ Sbjct: 2104 DTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNI 2163 Query: 908 HKSLE-------DHKLATKML--------------------------LQIHDELVFEVPE 934 K LE H ML LQ+HDEL++EV E Sbjct: 2164 QKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAE 2223 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E++ +QI+ + ME A I L V LKV +K+ +W E Sbjct: 2224 EDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2259 >gi|46309579|ref|NP_862905.1| DNA polymerase nu [Mus musculus] gi|32364063|gb|AAN39837.2| DNA polymerase N [Mus musculus] Length = 866 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 144/476 (30%), Positives = 251/476 (52%), Gaps = 31/476 (6%) Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 K S + S + + ++ N ++ L + L KL L ++ L+ P+I +++ ME Sbjct: 381 KPSSTFREASRNTLSQNVFMNLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVME 440 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 I +D++ +++ SA + L LE+ + ++GE+F + S QL +ILF KLK ++ Sbjct: 441 NHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQ 500 Query: 645 TK----TG---QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 K TG Q T+ L + +P+ K ILE+RQ+ KIKST+ D L ++ K + Sbjct: 501 RKHLPRTGLQNQLSTSEAMLNSLQ-DLHPLPKLILEYRQVHKIKSTFIDGLLAYMKKGS- 558 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPT 742 + + ++ T+TGRL++ PN+Q I PIK R F+S Sbjct: 559 -ISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEG 617 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRH 800 ++AD+SQIELRILAH++ L ++F+ S D+ + ++ + IE+V+ R Sbjct: 618 HTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQ 677 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 K + +S++YG RLA L + EA +++R+ ++ I ++ + GYV Sbjct: 678 TKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIGQCHSAGYVT 737 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATK 919 +I GRR I + +R ER A+N +QGSAAD+ + AMI + ++ L + Sbjct: 738 SILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTAR 797 Query: 920 MLLQIHDELVFEVPEEEITTASQI---IVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ QIHDEL+FEV + ++ + + I+ S+++ ++ L+VPLKVN+ V +W Sbjct: 798 LVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 853 >gi|90101283|sp|Q7TQ07|DPOLN_MOUSE RecName: Full=DNA polymerase nu Length = 864 Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 144/476 (30%), Positives = 251/476 (52%), Gaps = 31/476 (6%) Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 K S + S + + ++ N ++ L + L KL L ++ L+ P+I +++ ME Sbjct: 379 KPSSTFREASRNTLSQNVFMNLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVME 438 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 I +D++ +++ SA + L LE+ + ++GE+F + S QL +ILF KLK ++ Sbjct: 439 NHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQ 498 Query: 645 TK----TG---QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 K TG Q T+ L + +P+ K ILE+RQ+ KIKST+ D L ++ K + Sbjct: 499 RKHLPRTGLQNQLSTSEAMLNSLQ-DLHPLPKLILEYRQVHKIKSTFIDGLLAYMKKGS- 556 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPT 742 + + ++ T+TGRL++ PN+Q I PIK R F+S Sbjct: 557 -ISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEG 615 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRH 800 ++AD+SQIELRILAH++ L ++F+ S D+ + ++ + IE+V+ R Sbjct: 616 HTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQ 675 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 K + +S++YG RLA L + EA +++R+ ++ I ++ + GYV Sbjct: 676 TKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIGQCHSAGYVT 735 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATK 919 +I GRR I + +R ER A+N +QGSAAD+ + AMI + ++ L + Sbjct: 736 SILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTAR 795 Query: 920 MLLQIHDELVFEVPEEEITTASQI---IVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ QIHDEL+FEV + ++ + + I+ S+++ ++ L+VPLKVN+ V +W Sbjct: 796 LVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 851 >gi|148665536|gb|EDK97952.1| polymerase (DNA directed), theta, isoform CRA_b [Mus musculus] Length = 2119 Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 174/640 (27%), Positives = 282/640 (44%), Gaps = 122/640 (19%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I+ K++L GIS+ +ED + ++LD + SI Sbjct: 1480 SCLQKKSDRERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVACWLLDPDSKEPTLHSIV 1539 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++ I + + EH A S +I L L E Sbjct: 1540 TSFLPH-ELALLEGMETGPGIQSLGLNVNTEHSGRYRASVESVLIFNSMNQLNSLLQKEN 1598 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L ++ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 1599 LHDIFCKVEMPSQYCLALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFT 1658 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + +LF +LK P SG + + G+ +T++D+ Sbjct: 1659 SADDIAQVLFLELKLPPNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLK 1718 Query: 663 GDNPIIKNILEWRQLSK--IKSTYADSLPNHINK--RTQRVHTFYSLASTMTGRLASLEP 718 G +P+ ILEWR++S K + H+N R +R++ S + T TGR+ EP Sbjct: 1719 GLHPLPGLILEWRRISNAITKVVFPLQREKHLNPLLRMERIYPV-SQSHTATGRITFTEP 1777 Query: 719 NLQNIPI----------------------------------------KTDLGQK------ 732 N+QN+P +T + +K Sbjct: 1778 NIQNVPRDFEIKMPTLVRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGV 1837 Query: 733 -----IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 +R AF+ P +++ADYSQ+ELRILAH+++ L QV D+ R +AAE Sbjct: 1838 PFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKM 1897 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIE 847 + + V +R+HAK I + IIYG+ L Q+ I ++AA YI + R+ GI+ ++ Sbjct: 1898 IEPDAVGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMR 1957 Query: 848 KTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISV 907 T R+NG+VETI GRR + I + ER AIN +QGSAADI + A +++ Sbjct: 1958 DTVKNCRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNI 2017 Query: 908 HKSLE-------DHKLATKML--------------------------LQIHDELVFEVPE 934 K LE H ML LQ+HDEL++EV E Sbjct: 2018 QKQLETFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAE 2077 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E++ +QI+ + ME A I L V LKV +K+ +W E Sbjct: 2078 EDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2113 >gi|94961605|gb|ABF48184.1| family A DNA polymerase [Trichococcus collinsii] Length = 241 Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 103/241 (42%), Positives = 156/241 (64%), Gaps = 2/241 (0%) Query: 653 TAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGR 712 TA D+ + PI+++IL +RQL+K++STY + L I T ++HT Y T TGR Sbjct: 1 TAVDVLEKLQAQAPIVEHILNYRQLAKLQSTYVEGLLKFIKPETGKIHTRYQQTLTQTGR 60 Query: 713 LASLEPNLQNIPIKTDLGQKIRRAFISPPTK-KLISADYSQIELRILAHIAKITPLYQVF 771 L+S++PNLQNIPI+ + G+KIR+AF+ KL ++DYSQIELR+LAHI+ L + F Sbjct: 61 LSSVDPNLQNIPIRMEEGRKIRQAFVPQQAGWKLFASDYSQIELRVLAHISGDEHLQEAF 120 Query: 772 ENSLDIHRMVAAEIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 DIH A +FG+ E V+ +RR AK +NF ++YGIS + L+ L I R A + Sbjct: 121 LEGQDIHTSTAMRVFGIEKPEDVTANLRRQAKAVNFGVVYGISDYGLSQNLNITRKAAQE 180 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 +I RYF ++PG+ +++E ++NGYVET+F RR + +I++ ++R+ ER AIN+ Sbjct: 181 FIDRYFEKYPGVKQFMEDIVKEAKENGYVETLFHRRRYLPDIHNRNFNLRSFAERTAINS 240 Query: 891 P 891 P Sbjct: 241 P 241 >gi|168066269|ref|XP_001785063.1| predicted protein [Physcomitrella patens subsp. patens] gi|162663356|gb|EDQ50124.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1683 Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 143/465 (30%), Positives = 243/465 (52%), Gaps = 47/465 (10%) Query: 549 ILQLWLLLRP--KLIVEKLLH-VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 + Q+W+L KL+V + LH +L+ P++ V++ ME + +D + ++ + + Sbjct: 1216 VAQIWVLHCAFWKLLVAEGLHEALLQLEMPLVRVLADMETWSLGLDMRVCRKAQSHLHCK 1275 Query: 606 LLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDN 665 L LE L+G F+LS+P ++ +L+ LK P K +T + + + Sbjct: 1276 LRELEAQGEKLAGMSFSLSAPAEVAHVLYRHLKLPVPPGCKGKHHPSTDKQALEFLRNHH 1335 Query: 666 PIIKNILEWRQLSKIKSTYADSL------PNHI---NKRTQRVHTF-----YSLASTMTG 711 PI I E R LSK+ + S+ P + +R+ R F + ST TG Sbjct: 1336 PIADIIKEHRSLSKLLQSTLGSIIAWAKSPEPLFSSQERSSRGEIFSIAGHWLQTSTATG 1395 Query: 712 RLASLEPNLQ----NIPIKTDLGQKI---------------RRAFISPPTKK---LISAD 749 RL+ +PNLQ + + G+ + R+AF+ P+++ L+SAD Sbjct: 1396 RLSMEDPNLQCVEHAVSFTIEGGRSLDGDQEKANNVVEVNARQAFV--PSQEGWILLSAD 1453 Query: 750 YSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 YSQIELR++AH + L + + + D+ R++AA+ G+ + +VS + R K + + I Sbjct: 1454 YSQIELRLMAHFSGDPSLVSLLSHPTGDLFRVLAAQWTGLPMCEVSDKQRERTKRLVYGI 1513 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YG+ LA L P +EA ++R+ FP + ++ + RQ GY+ T+ GR+ + Sbjct: 1514 LYGMGVNTLAEHLECPVAEAQVMLERFKGTFPLVTTWLSHAVDSCRQKGYITTLSGRKRY 1573 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKMLLQIHDE 927 D+IN+ K + ER A+N+ QGSAAD+ + AMI VH ++ H+ + ++LLQIHDE Sbjct: 1574 LDKINTGKWGEQAKAERQAVNSICQGSAADLIKLAMIKVHDAISSSHQGSCRLLLQIHDE 1633 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 L+ EV + + +QI+ SME A I LRVPL+ ++V +W Sbjct: 1634 LLLEVDKRVLKHVAQILRSSMEGA----ITLRVPLRTKLQVGTSW 1674 >gi|291412349|ref|XP_002722448.1| PREDICTED: DNA-directed DNA polymerase nu [Oryctolagus cuniculus] Length = 858 Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 137/454 (30%), Positives = 243/454 (53%), Gaps = 28/454 (6%) Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 N ++ +L + L KL L ++ L+ P+I +++ ME +Q++++ +++ SA + Sbjct: 389 NLRILHRLMMTLCSKLKAYSLWQLFWTLELPLIPILAVMERHSVQVNKEEMERTSALLGA 448 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT---KTGQWKTTAQDLEQIN 661 L LE+ + ++GE+F ++S QL +ILF KLK ++ KTG K + +N Sbjct: 449 RLKELEQEAHFVAGERFLITSNNQLREILFDKLKLHLLSQRRLPKTGLQKYPSTSEAVLN 508 Query: 662 CGDN--PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 + P+ K ILE+RQ+ KIKST+ D L + R + + ++ T+TGRL++ PN Sbjct: 509 ALQDLHPLPKIILEYRQVHKIKSTFVDGLLACM--REGSISSTWNQTGTVTGRLSAKHPN 566 Query: 720 LQNI---PIKTDLGQKI------------RRAFISPPTKKLISADYSQIELRILAHIAKI 764 +Q I PI Q R F+S ++AD+SQIELRILAH++ Sbjct: 567 IQGISRHPIHITKPQNTKGKEDEILTISPRAMFVSSAGHTFLAADFSQIELRILAHLSGD 626 Query: 765 TPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 L ++F S D+ + ++ + +E V+ R K + +S++YG RLA L Sbjct: 627 AELLKLFHESEREDVFSTLTSQWKNMPVEHVTHVDREQTKKVVYSVVYGAGKERLAACLG 686 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 + EAA +++ + ++ I ++ + Q GYV ++ GRR I + + +R Sbjct: 687 VAVPEAARFLETFLQKYKKISDFAQAAIAQCHQRGYVTSVTGRRRPLPRICAQEPHLRAQ 746 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDELVFEVPEEEITTAS 941 ER A+N +QGSAAD+ + AMI + ++ L +++ QIHDEL+FEV + +I + Sbjct: 747 AERQAVNFVVQGSAADLCKMAMIRIFAAVSSSPTLTARLVAQIHDELLFEVEDAQIPEFA 806 Query: 942 QII---VHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ + S+++ ++ L+VPLKV++ V +W Sbjct: 807 ALVRGTMESLQQVPALELQLQVPLKVSLSVGRSW 840 >gi|194742333|ref|XP_001953657.1| GF17871 [Drosophila ananassae] gi|190626694|gb|EDV42218.1| GF17871 [Drosophila ananassae] Length = 2135 Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 165/589 (28%), Positives = 286/589 (48%), Gaps = 65/589 (11%) Query: 418 DDTSFKVETIFIDLSVH-TSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYD-KLV 475 D SF V++ ++ VH Q+ G+ T L + K F + H K K++ Sbjct: 1570 DCLSFCVDSHYV---VHFKMQEEKGRGVSTSLKLQEISKIFARTDLTLVMHKTKDQLKVI 1626 Query: 476 LHRY----GISMRGFEDIMLMSYVLDSGRSSH-------------DIASIAQKWLSYTRK 518 L I+++ FED + S+++ R+ ++ ++ L YT Sbjct: 1627 LQAIPELKTIAVK-FEDPNVASWLMQPDRNCSFQNMCQQYAPECLNLLNLCGSGLGYT-- 1683 Query: 519 EILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 S +D S+ Q A + V + + L + + V+ + P+ Sbjct: 1684 --------SYGLDASSEVSAQVRAQVEACVSVHILNGQMKSLEEHQFIKVFRDNEMPLCL 1735 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 +++QME+ G + + L + ++I+ ++ LE I++L+G +FN++S + + +L K Sbjct: 1736 ILAQMEVIGFPVKEHRLGNLISQIAGSMKKLEAKIFELNGSRFNINSSQAVAKVLGIHRK 1795 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 TG+ T+ + LE++ + PI I ++R+L+ + L R Sbjct: 1796 -------PTGRVSTSREVLERL---EAPIANLICQYRKLNALLVKNVQPLMKCC--LNNR 1843 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFIS--------PPTKKLISADY 750 +H +S+ +T TGR++ EPNLQN+ + + R A +S T+ L+SAD+ Sbjct: 1844 IHG-HSITNTATGRISMAEPNLQNVAKNFVVDVQDRGAIVSCRSAFMPMDSTRCLLSADF 1902 Query: 751 SQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 Q+E+RILAH+++ L + DI ++A +N +VS Q+R K I + IIY Sbjct: 1903 CQLEMRILAHLSQDKALVAAMNSPRDIFTSISAHWHRMNESEVSDQLREGTKKICYGIIY 1962 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 G+S +LA +L + EA +++ +PGI Y + + R GYVETI GRR + + Sbjct: 1963 GMSMRKLADELNVTEQEAEVLSEQFHSNYPGIRSYTNRLIKYARHKGYVETITGRRRYLE 2022 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH--KL-----ATKMLLQ 923 I S + R ER A+N+ IQGSAADI + A+I K + H KL + ++L Sbjct: 2023 NIRSEDAGTRKKAERQAVNSTIQGSAADIAKVAIIKSVKYMRRHCQKLFIDENSVNLVLH 2082 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 IHDEL+FEVP ++ ++++ ME + L VPLKV +K+ + W Sbjct: 2083 IHDELMFEVPADKAKKIAKLLKVVMEASA----RLTVPLKVKLKMGSCW 2127 >gi|169346903|ref|ZP_02865851.1| DNA-directed DNA polymerase [Clostridium perfringens C str. JGS1495] gi|169296962|gb|EDS79086.1| DNA-directed DNA polymerase [Clostridium perfringens C str. JGS1495] Length = 642 Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 163/572 (28%), Positives = 270/572 (47%), Gaps = 42/572 (7%) Query: 440 TGKNTL-TKEILSYLKKF-FENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVL 496 GKN ++++LK F F NE +K+ HNI ++ L+ YGI ++ D ML S + Sbjct: 75 NGKNVEDVHRMIAWLKGFVFHNESLIKVAHNIAFESSFLYEYGIVIKEPVFDTMLGSML- 133 Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-------IDKISDSQVQ--EHAIENSN 547 + +S + ++ + L KEI S D + + +A +S+ Sbjct: 134 -TFKSFGEFRTLRECGLKLLAKEIFNEDLPSFSHVVNGTHFDNLHSEHKETVRYACADSD 192 Query: 548 VILQL--WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 L+L W L + + + V ER++ P M+ GI ++++LL++ + + Sbjct: 193 YALRLYNWCLEWFETYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEE 252 Query: 606 LLSLEENIYDLSGEKFNLSSPKQ---LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN- 661 L + I + + NL S Q D LF L+ P + G+ + L ++ Sbjct: 253 LEFCKREILSFANREVNLGSNLQTQDFKDFLFKDLRLPVLKICEKGEPSLDDESLILLDE 312 Query: 662 -CGDN-----PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLAS 715 C N +I+ I +++SK+KSTY ++L +N T ++HT + T TGR +S Sbjct: 313 WCLRNFKKGTYLIECIKRHKRVSKLKSTYIEALGKLLNCETGKIHTDFFSMGTETGRFSS 372 Query: 716 LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 PNLQN+P K + IR+ FI P + D+SQIELR+ A+ + + F Sbjct: 373 RNPNLQNLPRKDNDHLGIRKLFIPSPNHVFLDFDFSQIELRVGAYYCRDRKMINAFMKDF 432 Query: 776 DIHRMVAAEIFGVNIEKVS-------PQMRRHAKTINFSIIYGISPFRLATQL------R 822 DIH + + I+ + +E+ + + R AK NF + +G+ P L L Sbjct: 433 DIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKNCNFGVFFGLFPKGLQKTLMYKGGIN 492 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNI 882 I + I+ +P + + + T GY + GRR + +I S + R + Sbjct: 493 ISEKDCERIIRNIKDGYPRLSTWQKDTVKVAAYRGYTRSRTGRRRYLKDIKSKDWNKRAV 552 Query: 883 NERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQ 942 +ER A+N PIQG+AADI + AM + + L + + K LLQIHDEL+FEV E+++ A Sbjct: 553 SERCALNTPIQGTAADIIKIAMARILRELPEREY-IKPLLQIHDELLFEVREDKVNEAIA 611 Query: 943 IIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I ME+ P + +PLKV V N+ E Sbjct: 612 FIKDCMERT--PFKDFNIPLKVEYSVGYNFDE 641 >gi|237756074|ref|ZP_04584652.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense SS-5] gi|237691767|gb|EEP60797.1| DNA polymerase I, thermostable [Sulfurihydrogenibium yellowstonense SS-5] Length = 299 Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 115/289 (39%), Positives = 173/289 (59%), Gaps = 7/289 (2%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N + L+DGSS++YRA+YA P L+ DG P A+ GF ML K L + AV Sbjct: 2 KNKVLLIDGSSYLYRAYYALPPLTA-PDGRPTGAVYGFIRMLLKTLSVFN----TPYVAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD P T R+E + +YKA R + P+ L Q+P+++ Q GI +EI G+EADDIIAT Sbjct: 57 AFDLPGKTLRHEKFSEYKATRKETPDPLKQQIPILKEIIQLLGIKILEIPGYEADDIIAT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + AE EG+ I++ DKD+ QL+S +++ VKEE +D E + +K+GI P++ + Sbjct: 117 LSKKAEIEGYEAIIVTPDKDMNQLISDNIKIFNPVKEELLDKEKIKEKYGIYPQQFIDYL 176 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY-AETARL 242 + GD++DNIPGI GIG KTAA LLQE+G+LENIL N ++K K +E+ E E + Sbjct: 177 TMIGDAVDNIPGIKGIGPKTAAALLQEFGSLENILENVDKLKG-KLKESFKEVDKEQLQR 235 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 ++++ L ++ I I +E L + +L + L F L+ V + Sbjct: 236 MKEIIKLDANIEINIKIEDLKKSKPDLEKLKQIFQELGFKSLLKDVEKS 284 >gi|167630919|ref|YP_001681418.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] gi|167593659|gb|ABZ85407.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] Length = 645 Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 159/554 (28%), Positives = 260/554 (46%), Gaps = 53/554 (9%) Query: 440 TGKNTLTKE-ILSYLKK-FFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYV 495 TGKN + + I+ +L + F N +KI HN+ ++ + L+ G+ ++ ++ I Sbjct: 70 TGKNAGSPDKIMQWLSENVFANRKVVKIAHNLSFEAMFLYALGVVLQPPCYDTIAAALMT 129 Query: 496 LDSGRSSHDIASIAQKWLSYTRKEI----LKSRKSSIPIDKIS--DSQVQEHAIENSNVI 549 L S + +A K L+ + ++ + D++ D + +A +S+ Sbjct: 130 LKSNTAFRTLADSGLKTLTQELFGVDLPSFETVTAGRYFDELDPQDEETVRYACADSDYT 189 Query: 550 LQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLL 607 L+L+ L + K + E+L+ P M+ G+ D++L+ + AE L Sbjct: 190 LRLYHLFNNWFNRYLPKHRFIVEKLESPAAVYCGLMKYNGLLADEELMLKKQAEAEGKLA 249 Query: 608 SLEENIYDLSGEKFNL---SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN--- 661 L NI L G+ N+ +S L+ LK P +KTTA+ E ++ Sbjct: 250 ELRGNIAFLIGD-VNIGANASTSAFKKYLYDDLKLPV--------FKTTAKYQEAMDDEA 300 Query: 662 -------CGDN-----PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 C +N + + + E+R+ KIKSTY D +IN T R+H T Sbjct: 301 MILLSEWCRENRPELAELFELVQEYRRWGKIKSTYIDGYLEYINSVTGRIHPDMFPLGTE 360 Query: 710 TGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 TGR A+ PNLQN P K + +R FI+P K L+S D+SQIELR+ A + + + Sbjct: 361 TGRFAARNPNLQNCPRKDNDPVGVRNFFIAPKGKALLSLDFSQIELRVGAFYCRDERMLE 420 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSPQMRRH-------AKTINFSIIYGISP------FR 816 + DIH + I+ + E+ + + +H AK NF + YG+ P + Sbjct: 421 TYRTGGDIHAQTTSVIYRIPFEEAADKSAQHYKERRAIAKNCNFGVFYGLFPKGLHRNLK 480 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L P SE I +P + ++ EKTK Y ET GRR + +I S Sbjct: 481 FKAGLDTPLSECERIIANLKAGYPRLVQWQEKTKKRAASRRYTETWLGRRRYLPDIASSD 540 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 ++ ER A+N PIQG+AADI + A+ + + L ++ + +LQIHDELVFEVPE++ Sbjct: 541 WGKKSFAERCALNTPIQGTAADILKLALGRIIEGLP-QRMRLRPVLQIHDELVFEVPEDK 599 Query: 937 ITTASQIIVHSMEK 950 + A+ I ME+ Sbjct: 600 VHEAAVFIKSCMEE 613 >gi|145334203|ref|NP_001078482.1| DNA-directed DNA polymerase family protein [Arabidopsis thaliana] gi|62241195|dbj|BAD93700.1| helicase and polymerase containing protein TEBICHI [Arabidopsis thaliana] gi|332660705|gb|AEE86105.1| DNA polymerase theta subunit [Arabidopsis thaliana] Length = 2154 Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 137/453 (30%), Positives = 238/453 (52%), Gaps = 44/453 (9%) Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 L+ E+LL ++ P+++V++ ME+ GI ID + + + L SLE+ ++L+G Sbjct: 1697 LVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRARNILRDKLRSLEKKAFELAGM 1756 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK-TTAQDLEQINCGDNPIIKNILEWRQLS 678 F+L +P + ++LF +LK P G+ +T + + ++P++ I E R L+ Sbjct: 1757 TFSLHNPADIANVLFGQLKLPIPENQSKGKLHPSTDKHCLDLLRNEHPVVPIIKEHRTLA 1816 Query: 679 KIKSTYADSLPNHINKR--TQR--VHTFYSLASTMTGRLASLEPNLQNIPIKTDL----- 729 K+ + S+ + R TQR +H + ST TGRL+ EPNLQ++ + + Sbjct: 1817 KLLNCTLGSICSLAKLRLSTQRYTLHGRWLQTSTATGRLSIEEPNLQSVEHEVEFKLDKN 1876 Query: 730 GQKIR----------RAFISPPTKK--LISADYSQIELRILAHIAKITPL-YQVFENSLD 776 G+ + R F P + L++ADYSQIELR++AH ++ + L ++ + D Sbjct: 1877 GRDVSSDADRYKINARDFFVPTQENWLLLTADYSQIELRLMAHFSRDSSLISKLSQPEGD 1936 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 + M+AA+ G + VSP R K + + I+YG+ RLA QL EA + I+ + Sbjct: 1937 VFTMIAAKWTGKAEDSVSPHDRDQTKRLIYGILYGMGANRLAEQLECTSDEAKEKIRSFK 1996 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + ++ +T +F ++ GY++T+ GRR +I + ++ +R A+N+ QGSA Sbjct: 1997 SSFPAVTSWLNETISFCQEKGYIQTLKGRRRFLSKIKFGNAKEKSKAQRQAVNSMCQGSA 2056 Query: 897 ADITRRAMISVHKSLEDH-----------------KLATKMLLQIHDELVFEVPEEEITT 939 ADI + AMI+++ ++ + K ++LLQ+HDELV EV + Sbjct: 2057 ADIIKIAMINIYSAIAEDVDTAASSSSSETRFHMLKGRCRILLQVHDELVLEVDPSYVKL 2116 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 A+ ++ SME A ++L VPL V +KV W Sbjct: 2117 AAMLLQTSMENA----VSLLVPLHVKLKVGKTW 2145 >gi|301762338|ref|XP_002916602.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Ailuropoda melanoleuca] Length = 1040 Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 153/549 (27%), Positives = 278/549 (50%), Gaps = 59/549 (10%) Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524 GH+ + K V+H G+ D + ++++D G ++ + K+L E S Sbjct: 325 FGHDGSW-KHVVHFVGL------DPRIAAWLIDPGDAAPSFEDLVAKYL-----ESSISV 372 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 K + S + V ++ N ++ +L + L +L V L ++ L+ P+I +++ ME Sbjct: 373 KVNSTYGNSSRNVVNQNVRVNLKILYRLTMGLCSQLKVYGLWQLFCTLELPLIPILAVME 432 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP---- 640 IQ+D++ +++ SA + L LE+ + ++GE+F ++S QL ++LF KLK P Sbjct: 433 SHSIQVDREEMERTSALLGSRLKELEQEAHFVAGEQFLITSNNQLREVLFGKLKLPLLSP 492 Query: 641 --SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR 698 + +T + +T++ + + +P+ K ILE+R++ K KS + D L + K + Sbjct: 493 RETLPRTGLQRLPSTSEAVLRALQDLHPLPKIILEYRRVHKTKSAFVDGLLACMRKGS-- 550 Query: 699 VHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTK 743 + + ++ T+TGRL++ PN+Q I PI+ Q R F++P Sbjct: 551 ISSTWNQTGTVTGRLSARHPNIQGISKHPIQITKPQNFKGVEGAMLTISPRSMFVAPEGH 610 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHA 801 ++AD+SQIELRILAH++ L ++F+ S D+ + ++ GV E V+ R Sbjct: 611 TFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKGVPPEHVTHADREQT 670 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K + +S +YG RLA L + EAA +++ + ++ + ++++ T Q GYV + Sbjct: 671 KKVVYSAVYGAGKERLAACLGVTVQEAAWFLESFLQKYKKVKDFVQTTIAQCHQTGYVAS 730 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL-EDHKLATKM 920 I GRR + + +R ER A+N +QGSAAD+ + AMI V ++ L ++ Sbjct: 731 IMGRRRPLPRVRAQDQQLRAQAERQAVNFVVQGSAADLCKMAMIRVFAAVAASPTLTARL 790 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR-----------------VPLK 963 + QIHDEL+FEV + +I + ++ +ME N+R VPLK Sbjct: 791 VAQIHDELLFEVDDSQIPELAALVRGTMESL----RNVRALELQNRLTPREQDPEVVPLK 846 Query: 964 VNIKVSNNW 972 V++ ++W Sbjct: 847 VSLSAGHSW 855 >gi|297802740|ref|XP_002869254.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297315090|gb|EFH45513.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 2147 Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 137/453 (30%), Positives = 236/453 (52%), Gaps = 44/453 (9%) Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 L+ E+LL + P+++V++ ME+ GI +D + + + L SLE+ ++L+G Sbjct: 1690 LVSEELLEALTTTEMPLVNVLADMELWGIGVDIEGCLRARNILRDKLRSLEKKAFELAGM 1749 Query: 620 KFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK-TTAQDLEQINCGDNPIIKNILEWRQLS 678 F+L +P + ++LF +LK P G+ +T + + ++P++ I E R L+ Sbjct: 1750 TFSLHNPADIANVLFGQLKLPIPENQSKGKLHPSTDKHCLDLLRNEHPVVPIIKEHRTLA 1809 Query: 679 KIKSTYADSLPNHINKR--TQR--VHTFYSLASTMTGRLASLEPNLQNIPIKTDL----- 729 K+ + S+ + R TQR +H + ST TGRL+ EPNLQ++ + + Sbjct: 1810 KLLNCTLGSICSLAKLRLSTQRYTLHGRWLQTSTATGRLSIEEPNLQSVEHEVEFILDKN 1869 Query: 730 GQKIR----------RAFISPPTKK--LISADYSQIELRILAHIAKITPL-YQVFENSLD 776 G+ + R F P + L++ADYSQIELR++AH ++ + L Q+ + D Sbjct: 1870 GKDVNSDADSYKINARDFFVPTQENWLLLTADYSQIELRLMAHFSRDSSLISQLRQPEGD 1929 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 + M+AA+ G VSP R K + + I+YG+ RLA QL EA + I+ + Sbjct: 1930 VFTMIAAKWTGKAEGSVSPHDRDQTKRLIYGILYGMGANRLAEQLECSSDEAKEKIRSFK 1989 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 FP + ++ +T +F ++ GY++T+ GRR +I + ++ +R A+N+ QGSA Sbjct: 1990 SSFPAVTSWLNETISFCQEKGYIQTLKGRRRFLSKIKFGNAKEKSKAQRQAVNSMCQGSA 2049 Query: 897 ADITRRAMISVHKSLEDH-----------------KLATKMLLQIHDELVFEVPEEEITT 939 ADI + AMI+++ ++ + K ++LLQ+HDELV EV + Sbjct: 2050 ADIIKIAMINIYSAIAEDVDTTASSSSSETRFHMLKGRCRILLQVHDELVLEVDPSYVKV 2109 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 A+ ++ SME A ++L VPL V +KV W Sbjct: 2110 AAMLLQTSMENA----VSLLVPLHVKLKVGKTW 2138 >gi|242083352|ref|XP_002442101.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor] gi|241942794|gb|EES15939.1| hypothetical protein SORBIDRAFT_08g011950 [Sorghum bicolor] Length = 917 Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 156/533 (29%), Positives = 259/533 (48%), Gaps = 60/533 (11%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA----I 543 DI L+++VL S + ++ + + ++ + ++ D +Q+ + A Sbjct: 386 DICLLAWVLWPDEESRTVPNLEK----FVKRRLHSEAAAAANRDGRWRNQMHKAAHNGCC 441 Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 S L+ +L+ KL+ + L + E ++ P+++V++ ME+ GI D D I+ Sbjct: 442 RRSAQTRALYTVLK-KLLTQNLSDLVETIEAPLVNVLADMELWGIGADMDACLHARHIIT 500 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW--KTTAQDLEQIN 661 K L LE+ Y L+G+ F+L++ + DIL+ LK P + G+ T Q L+ + Sbjct: 501 KKLKELEKEAYRLAGKNFSLNATADIADILYVHLKLPVPKGCEKGKLHPSTDKQSLDHLR 560 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR----VHTFYSLASTMTGRLASLE 717 +PII I E R L+K+ + S+ + TQ +H + ST TGRL+ E Sbjct: 561 -DQHPIIPVIKEHRTLAKLLNGTLWSICSRAQLCTQSQRYIIHGNWLQTSTATGRLSMEE 619 Query: 718 PNLQNIP--IKTDLGQK---------------IRRAFISPPTKK---LISADYSQIELRI 757 PNLQ + ++ D G+ +R FI PTK+ ++ADYSQIELR+ Sbjct: 620 PNLQCVEHLVEFDTGKSNKDYCMSVDDHHKINVRDFFI--PTKENWLFVTADYSQIELRL 677 Query: 758 LAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 +AH +K L ++ D+ M+A+ +S + R + K + + I+YG+ Sbjct: 678 MAHFSKDPTLVELLSKPDGDVFTMIASRWADKEEALISSKERENTKRLIYGILYGMGANS 737 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 LA QL +AA I+ + FPG+ ++ + RQ GYVET+ GRR +I + Sbjct: 738 LAEQLECSTEDAAQKIQSFRRLFPGVSSWLHEVVLSCRQKGYVETLLGRRRFLTKITAGN 797 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT-----------------K 919 S + +R A+N+ QGSAADI + AMI +H + + AT Sbjct: 798 SKEKAKAQRQAVNSICQGSAADIIKVAMIRLHSVITNRTRATDSTDEVTRKFSEFGGQCH 857 Query: 920 MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++LQ+HDELV EV + A +++ ME+A +L VPL+ IKV W Sbjct: 858 LILQVHDELVLEVVPCMVAQAGRLLQICMEEA----ASLLVPLRTKIKVGKTW 906 >gi|17933644|ref|NP_524333.1| mutagen-sensitive 308 [Drosophila melanogaster] gi|2340084|gb|AAB67306.1| Mus308 [Drosophila melanogaster] gi|7299675|gb|AAF54858.1| mutagen-sensitive 308 [Drosophila melanogaster] gi|201065649|gb|ACH92234.1| FI03732p [Drosophila melanogaster] Length = 2059 Score = 200 bits (509), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 132/425 (31%), Positives = 224/425 (52%), Gaps = 32/425 (7%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 LL + ++ P+ + QME+ G + L+Q+ + + +E IY+ G +FNL Sbjct: 1646 LLKFFHDIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSRFNLG 1705 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 S + + +L K G+ T+ Q LE++N +PI IL +R+LS + + Sbjct: 1706 SSQAVAKVLGLHRK-------AKGRVTTSRQVLEKLN---SPISHLILGYRKLSGLLAKS 1755 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN------IPIKTDLGQKIRRAFI 738 L + R+H S+ T TGR++ EPNLQN I + +D+ R+ Sbjct: 1756 IQPLMECC--QADRIHG-QSITYTATGRISMTEPNLQNVAKEFSIQVGSDVVHISCRSPF 1812 Query: 739 SPP--TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 P ++ L+SAD+ Q+E+RILAH+++ L +V ++S D+ +AA + +V+ Sbjct: 1813 MPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEESEVTQD 1872 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 +R K + + I+YG+ LA L EA ++ + GI +Y + NF R Sbjct: 1873 LRNSTKQVCYGIVYGMGMRSLAESLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFARSK 1932 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-- 914 G+VETI GRR + + INS ++N ER A+N+ IQGSAADI + A++ + K++E + Sbjct: 1933 GFVETITGRRRYLENINSDVEHLKNQAERQAVNSTIQGSAADIAKNAILKMEKNIERYRE 1992 Query: 915 KLA-----TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 KLA +++ +HDEL+FEVP + ++++ +ME + L VPLKV +++ Sbjct: 1993 KLALGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENC----VKLSVPLKVKLRIG 2048 Query: 970 NNWQE 974 +W E Sbjct: 2049 RSWGE 2053 >gi|198451642|ref|XP_001358456.2| GA19301 [Drosophila pseudoobscura pseudoobscura] gi|198131580|gb|EAL27595.2| GA19301 [Drosophila pseudoobscura pseudoobscura] Length = 2054 Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 148/455 (32%), Positives = 233/455 (51%), Gaps = 36/455 (7%) Query: 541 HAIENSNVIL-QLWLLLRPKLIVEKLLHVYERLDK-----PMIDVVSQMEITGIQIDQDL 594 H +++S+ IL +L + + V L E L++ P+ V+ +ME G Sbjct: 1609 HGLDSSSAILPKLRASIEACVTVHILKGQIENLERIEVEMPIQIVLCRMECVGFPAKHQR 1668 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 + ++ + L +E IY + G KFNL S + + ++L K G+ T+ Sbjct: 1669 MGRLIKHMLDTLNKVEIKIYKMHGSKFNLGSTQAVANVLGLHRK-------PHGRVSTSR 1721 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 Q LE++ +PI + IL R+L+ P + R+H +S+ T TGR++ Sbjct: 1722 QVLEKLG---SPISELILNHRKLNM--QIVKGMQPLIRCCKANRIHG-HSITHTATGRIS 1775 Query: 715 SLEPNLQNIPIKTDLGQ-------KIRRAFISPPTKK-LISADYSQIELRILAHIAKITP 766 EPNLQN+ D+ R F S K+ L+SAD+ Q+E+RILAH+++ Sbjct: 1776 MSEPNLQNVAKDFDIRMGPDSVRISCRSVFKSMDEKRCLLSADFCQLEMRILAHLSQDKA 1835 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L V + D+ +AA + +V+ QMR K I + I+YG+ L L+ S Sbjct: 1836 LVSVMNSPQDLFTAIAAHWNHIPEAEVTEQMRSGTKQICYGIVYGMGMRSLGDALQCTES 1895 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA +++ +PGI Y EK F R+ GYVETI GRR + D INS + ++ ER Sbjct: 1896 EAQLICEQFHQSYPGIRAYTEKVLKFARKLGYVETITGRRRYLDHINSGEQNLIKQAERQ 1955 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDH--KLAT-----KMLLQIHDELVFEVPEEEITT 939 A+N IQGSAADI +RA++ + K++ + KL +++L IHDELV+EVPE + Sbjct: 1956 AVNTTIQGSAADIAKRAILDMDKNIGRYWKKLGVEENSIQLVLHIHDELVYEVPEAKAKR 2015 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ + +ME + K L VPLKV IK+ +W E Sbjct: 2016 IAKFLGLTMES--IGKGKLTVPLKVKIKMGESWGE 2048 >gi|195145962|ref|XP_002013959.1| GL23113 [Drosophila persimilis] gi|194102902|gb|EDW24945.1| GL23113 [Drosophila persimilis] Length = 2193 Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 148/455 (32%), Positives = 233/455 (51%), Gaps = 36/455 (7%) Query: 541 HAIENSNVIL-QLWLLLRPKLIVEKLLHVYERLDK-----PMIDVVSQMEITGIQIDQDL 594 H +++S+ IL +L + + V L E L++ P+ V+ +ME G Sbjct: 1748 HGLDSSSAILPKLRASIEACVTVHILKGQIENLERIEVEMPIQIVLCRMECVGFPAKHQR 1807 Query: 595 LKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTA 654 + ++ + L +E IY + G KFNL S + + ++L K G+ T+ Sbjct: 1808 MGRLIKHMLDTLNKVEIKIYKMHGSKFNLGSTQAVANVLGLHRK-------PHGRVSTSR 1860 Query: 655 QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLA 714 Q LE++ +PI + IL R+L+ P + R+H +S+ T TGR++ Sbjct: 1861 QVLEKLG---SPISELILNHRKLNM--QIVKGMQPLIRCCKANRIHG-HSITHTATGRIS 1914 Query: 715 SLEPNLQNIPIKTDLGQ-------KIRRAFISPPTKK-LISADYSQIELRILAHIAKITP 766 EPNLQN+ D+ R F S K+ L+SAD+ Q+E+RILAH+++ Sbjct: 1915 MSEPNLQNVAKDFDIRMGPDSVRISCRSVFKSMDEKRCLLSADFCQLEMRILAHLSQDKA 1974 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L V + D+ +AA + +V+ QMR K I + I+YG+ L L+ S Sbjct: 1975 LVSVMNSPQDLFTAIAAHWNHIPEAEVTEQMRSGTKQICYGIVYGMGMRSLGDALQCTES 2034 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERA 886 EA +++ +PGI Y EK F R+ GYVETI GRR + D INS + ++ ER Sbjct: 2035 EAQLICEQFHQSYPGIRAYTEKVLKFARKLGYVETITGRRRYLDHINSGEQNLIKQAERQ 2094 Query: 887 AINAPIQGSAADITRRAMISVHKSLEDH--KLAT-----KMLLQIHDELVFEVPEEEITT 939 A+N IQGSAADI +RA++ + K++ + KL +++L IHDELV+EVPE + Sbjct: 2095 AVNTTIQGSAADIAKRAILDMDKNIGRYWKKLGVEENSIQLVLHIHDELVYEVPEAKAKR 2154 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++ + +ME + K L VPLKV IK+ +W E Sbjct: 2155 IAKFLGLTMES--IGKGKLTVPLKVKIKMGESWGE 2187 >gi|291400571|ref|XP_002716686.1| PREDICTED: DNA polymerase theta isoform 1 [Oryctolagus cuniculus] Length = 2585 Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 169/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L G+S+ + FED + ++LD + SI Sbjct: 1945 SCLQKASDKERSVIIYDFIRSYKILLLSCGVSLEQSFEDPKVACWLLDPDSKEPTLHSIV 2004 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L +L+ ++ I + + EH A S +I L L EK Sbjct: 2005 TSFLP-CELPLLEEMETGQGIQSLGLNVSMEHSGRYRASVESILIFNSMNQLNALLQKEK 2063 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L ++ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 2064 LQDIFHKVEMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLAGHSFSFT 2123 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P G K K G+ +T++D+ Sbjct: 2124 SSDDIAEVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNKLK 2183 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R +R++ F + + T TGR+ Sbjct: 2184 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 2238 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 +EPN+QN+P + T +G+ Sbjct: 2239 FIEPNIQNVPRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEERA 2298 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH+++ L QV D+ R +A Sbjct: 2299 SDRGIPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSIA 2358 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 2359 AEWRMMEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2418 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 + ++++T R++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 2419 NHFMKETVKNCRRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKI 2478 Query: 903 AMISVHKSLEDHKLATK---------------------------------MLLQIHDELV 929 A +++ K LE K +LQ+HDEL+ Sbjct: 2479 ATVNIQKQLETFHSTFKSHGHREGVLQSDKTGLFPKRRLPGVFCPVRGGFFILQLHDELL 2538 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A I L V LKV +K+ +W E Sbjct: 2539 YEVAEEDVVQVAQIVKNEMENA----IKLSVKLKVKVKIGASWGE 2579 >gi|60678001|gb|AAX33507.1| LP14642p [Drosophila melanogaster] Length = 2059 Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 131/425 (30%), Positives = 223/425 (52%), Gaps = 32/425 (7%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 LL + ++ P+ + QME+ G + L+Q+ + + +E IY+ G +FNL Sbjct: 1646 LLKFFHDIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSRFNLG 1705 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 S + + +L K G+ T+ Q LE++N +PI IL +R+LS + + Sbjct: 1706 SSQAVAKVLGLHRK-------AKGRVTTSRQVLEKLN---SPISHLILGYRKLSGLLAKS 1755 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN------IPIKTDLGQKIRRAFI 738 L + R+H S+ T TGR++ EPNLQN I + +D+ R+ Sbjct: 1756 IQPLMECC--QADRIHG-QSITYTATGRISMTEPNLQNVAKEFSIQVGSDVVHISCRSPF 1812 Query: 739 SPP--TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ 796 P ++ L+SAD+ Q+E+RILAH+++ L +V ++S D+ +AA + +V+ Sbjct: 1813 MPTDESRCLLSADFCQLEMRILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEESEVTQD 1872 Query: 797 MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQN 856 +R K + + I+YG+ LA L EA ++ + GI +Y + NF Sbjct: 1873 LRNSTKQVCYGIVYGMGMRSLAESLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFAHSK 1932 Query: 857 GYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-- 914 G+VETI GRR + + INS ++N ER A+N+ IQGSAADI + A++ + K++E + Sbjct: 1933 GFVETITGRRRYLENINSDVEHLKNQAERQAVNSTIQGSAADIAKNAILKMEKNIERYRE 1992 Query: 915 KLA-----TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 KLA +++ +HDEL+FEVP + ++++ +ME + L VPLKV +++ Sbjct: 1993 KLALGDNSVDLVMHLHDELIFEVPTGKAKKIAKVLSLTMENC----VKLSVPLKVKLRIG 2048 Query: 970 NNWQE 974 +W E Sbjct: 2049 RSWGE 2053 >gi|291400573|ref|XP_002716687.1| PREDICTED: DNA polymerase theta isoform 2 [Oryctolagus cuniculus] Length = 2306 Score = 198 bits (503), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 169/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L G+S+ + FED + ++LD + SI Sbjct: 1666 SCLQKASDKERSVIIYDFIRSYKILLLSCGVSLEQSFEDPKVACWLLDPDSKEPTLHSIV 1725 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L +L+ ++ I + + EH A S +I L L EK Sbjct: 1726 TSFLP-CELPLLEEMETGQGIQSLGLNVSMEHSGRYRASVESILIFNSMNQLNALLQKEK 1784 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L ++ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 1785 LQDIFHKVEMPSQYCLALLELNGIGFSTAESESQKHIMQAKLDAIETQAYQLAGHSFSFT 1844 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P G K K G+ +T++D+ Sbjct: 1845 SSDDIAEVLFLELKLPPNGEMKSQGCKKTLGSTRRGNDKGCKLKLGRQLSTSKDVLNKLK 1904 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R +R++ F + + T TGR+ Sbjct: 1905 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 1959 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 +EPN+QN+P + T +G+ Sbjct: 1960 FIEPNIQNVPRDFEIKMPTLVGESPPPLVQGKGLLPKSRGPDEKDCTLNPKPWAQMEERA 2019 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH+++ L QV D+ R +A Sbjct: 2020 SDRGIPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSQDRRLIQVLNTGEDVFRSIA 2079 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 2080 AEWRMMEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2139 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 + ++++T R++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 2140 NHFMKETVKNCRRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKI 2199 Query: 903 AMISVHKSLEDHKLATK---------------------------------MLLQIHDELV 929 A +++ K LE K +LQ+HDEL+ Sbjct: 2200 ATVNIQKQLETFHSTFKSHGHREGVLQSDKTGLFPKRRLPGVFCPVRGGFFILQLHDELL 2259 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A I L V LKV +K+ +W E Sbjct: 2260 YEVAEEDVVQVAQIVKNEMENA----IKLSVKLKVKVKIGASWGE 2300 >gi|332225568|ref|XP_003261953.1| PREDICTED: DNA polymerase theta, partial [Nomascus leucogenys] Length = 2473 Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 169/645 (26%), Positives = 285/645 (44%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 1833 SCLRKESDKERSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1892 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 1893 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1951 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+L+ Sbjct: 1952 LQDVFRKVEMPSQYCLALLELNGIGFSAAECESQKHIMQAKLDAIETQAYQLAGHSFSLT 2011 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 2012 SSDDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLK 2071 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R +R++ F + + T TGR+ Sbjct: 2072 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 2126 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 +EPN+QN+P + T +G+ Sbjct: 2127 FIEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYTKGCSLNPRCQAQMEERA 2186 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L Q D+ R +A Sbjct: 2187 ADRGMPFSISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQALNTGADVFRSIA 2246 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 2247 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2306 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 2307 NQFMRETVKNCKRDGFVQTILGRRRYLPGIEDNNPYHKAHAERQAINTTVQGSAADIVKI 2366 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 2367 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2426 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 2427 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2467 >gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga] gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva] Length = 1786 Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 151/544 (27%), Positives = 286/544 (52%), Gaps = 38/544 (6%) Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSG 499 G+N L K +LKK F+++ +K+ HN K+D L YG G D M+ S +L + Sbjct: 1271 GRNELIK--CEWLKKLFKSKETVKVFHNGKFDINFLRVYGFEFEGPIFDTMVASKLLVAS 1328 Query: 500 RS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558 R S + +++++L+ + + S ++ + Q+ ++ +S V+L L+++L Sbjct: 1329 RYISCKLTHVSERYLNIVLDKT--QQYSDWSTLQLFEEQLL-YSARDSFVLLPLYVILEH 1385 Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LS 617 L + L + +K ++ S ME+ GIQ+D+D LK + E+ + + +Y L+ Sbjct: 1386 LLKINNLSDIASVENKCIL-ATSDMELNGIQVDEDKLKFLQDELKQEHQEISNTLYSQLN 1444 Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677 + NL+S KQ+ + L +LK +K K + + + ++ NPII ++ E+R+ Sbjct: 1445 QSEINLNSQKQVLEKL-QELKIMDKSKKKIISDTSESTLIRNMS---NPIISSLREYRKA 1500 Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 +K + + LPNHIN T+R++ Y+ +GR + PNLQ +P +K R F Sbjct: 1501 NKALTAFTQKLPNHINPITKRIYPNYNQLGAESGRFSCDGPNLQQVP----RDKKFRECF 1556 Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797 ++P K + AD+SQIELRI A IA + Q ++ +D+H + A+ + NI V+ + Sbjct: 1557 VAPKGSKFVIADFSQIELRIAAEIANDPKMIQAYQQKVDLHSLTASILKNKNINDVNKEE 1616 Query: 798 RRHAKTINFSIIYGIS--PFRLATQ----LRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851 R+ AK +NF +I+G+S R+ + L++ ++EA + +F+ F GI + KN Sbjct: 1617 RQLAKAVNFGLIFGMSINGLRMYAETGYNLKLTQNEAKEIYTSFFNNFKGILNWHNSVKN 1676 Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911 + V T+ R ++ + +S +N P+QG++ADIT+ M + + Sbjct: 1677 --SRPTMVRTLGNRLSVFESFSFTRS----------LNYPVQGTSADITKETMARLVDLV 1724 Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 + L K+++ +HDE++ EVPE+ A ++++ +M K+ K +VP++ + ++ Sbjct: 1725 K--PLNAKIIICVHDEIILEVPEDNAEKALKMLIDTMVKSG-EKYLKKVPVEAMGSIGDS 1781 Query: 972 WQEE 975 W ++ Sbjct: 1782 WADK 1785 >gi|114588750|ref|XP_001165287.1| PREDICTED: DNA polymerase theta isoform 4 [Pan troglodytes] Length = 2499 Score = 197 bits (501), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 169/645 (26%), Positives = 285/645 (44%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 1859 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1918 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 1919 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1977 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 1978 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 2037 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 2038 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 2097 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R +R++ F + + T TGR+ Sbjct: 2098 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 2152 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 +EPN+QN+P + T +G+ Sbjct: 2153 FIEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 2212 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ R +A Sbjct: 2213 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2272 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 2273 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2332 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 2333 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2392 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 2393 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2452 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 2453 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2493 >gi|99035969|ref|ZP_01315013.1| hypothetical protein Wendoof_01000149 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 529 Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 175/299 (58%), Gaps = 8/299 (2%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 KE ++DG F++RA+Y P L G+P+ + GF NM+ K + +S +IA Sbjct: 2 KEKTFTIIDGYGFLFRAYYVLPHLITT-TGMPIGGVYGFLNMVLKYIAHSDYLTIA---- 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 D FR+ +YP+YKANR PE L PQ ++R A +AF + EI+G+EADDIIA Sbjct: 57 --LDAGKKNFRHNLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIA 114 Query: 123 TYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T A + F V ++S+DKDL QL++ ++D +K ID + VI+K+G+ K++ Sbjct: 115 TLAAKYANHQDFKVVVVSSDKDLFQLLNHNILIFDPIKNIYIDEKQVIEKFGVNSHKLLD 174 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L +LTGD+ DNIPG+PGIG KTAA LL E+ +L NI+ N I+Q + R + E+ E A Sbjct: 175 LFSLTGDASDNIPGVPGIGPKTAAKLLDEFDSLNNIIENIDNIEQTRIRNILAEHKEKAL 234 Query: 242 LSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 +SR+L+ L V + + + N +L+SFLK EF LI +V + ++ E Sbjct: 235 ISRELLSLCEKVDLQHDIAKCEVRPPNMEKLLSFLKKYEFNSLIGKVEKLFSYSGSSTE 293 Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/175 (36%), Positives = 96/175 (54%), Gaps = 24/175 (13%) Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 LKI HNIK + + + +D+M+MSY LD+G+ H I +I LS EI Sbjct: 361 LKIIHNIKEIRKIFPAIEKMLDSVDDLMIMSYSLDTGKHDHSIPNIVAHNLS-ENAEIF- 418 Query: 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 S K+ I I + L+ +L EKLL +YER DKP++ V+ Sbjct: 419 SAKTLIAIHE----------------------KLKQRLFQEKLLTIYERFDKPLMKVIFD 456 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 ME GI ++ L+++S + + + LE+ IY+L+GE+FN++SPKQL D+LF K+ Sbjct: 457 MEKNGILLNIQKLQELSDKFQQVIAVLEDEIYNLAGERFNIASPKQLSDVLFNKM 511 >gi|114588754|ref|XP_001165216.1| PREDICTED: DNA polymerase theta isoform 3 [Pan troglodytes] Length = 2500 Score = 197 bits (501), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 169/645 (26%), Positives = 285/645 (44%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 1860 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1919 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 1920 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1978 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 1979 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 2038 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 2039 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 2098 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R +R++ F + + T TGR+ Sbjct: 2099 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 2153 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 +EPN+QN+P + T +G+ Sbjct: 2154 FIEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 2213 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ R +A Sbjct: 2214 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2273 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 2274 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2333 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 2334 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2393 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 2394 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2453 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 2454 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2494 >gi|330858981|emb|CBX69340.1| hypothetical protein YEW_IM36920 [Yersinia enterocolitica W22703] Length = 323 Score = 197 bits (500), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 166/306 (54%), Gaps = 11/306 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML LL R SH AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSK-GEPTGAMYGVLNMLRSLLLQYRP----SHVAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ +YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFAEYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLVVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G AV I + DKD+ QLV+P L +T+ + + V +K+G+PPE ++ Sbjct: 121 LAQEAEKAGHAVLISTGDKDMAQLVTPNITLINTMNNAILGPQEVCEKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+++ N +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDSLFSNLDKIPTLTFRGAKTMSAKLEQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAA 297 + A LS KL ++TDV + I + L + + +L EF + + V D Sbjct: 241 DVAYLSYKLATIKTDVELDITCDELNVSAPDDEQLHQLFSRYEFKRWLADVEAGKWLDGK 300 Query: 298 NIEPVV 303 P Sbjct: 301 KDRPTA 306 >gi|296226149|ref|XP_002807658.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Callithrix jacchus] Length = 2550 Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 169/645 (26%), Positives = 285/645 (44%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 1910 SCLQKESDEERSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1969 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 1970 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2028 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 2029 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHILQAKLDAIETQAYQLAGHSFSFT 2088 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 2089 SSDDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLK 2148 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R +R++ F + + T TGR+ Sbjct: 2149 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 2203 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 EPN+QN+P + T +G+ Sbjct: 2204 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKIKKGWSLNPGCQAQMEERA 2263 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L QV + D+ R +A Sbjct: 2264 AERGMPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNSGADVFRSIA 2323 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 2324 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2383 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 2384 NQFMRETVKNCKRDGFVQTILGRRRYLPGIKENNPYHKAHAERQAINTTVQGSAADIVKI 2443 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 2444 ATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLLPKRKLQGMFCPIRGGFFILQLHDELL 2503 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 2504 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2544 >gi|114588748|ref|XP_516680.2| PREDICTED: DNA polymerase theta isoform 5 [Pan troglodytes] gi|332817593|ref|XP_001165150.2| PREDICTED: DNA polymerase theta isoform 1 [Pan troglodytes] Length = 2596 Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 169/645 (26%), Positives = 285/645 (44%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 1956 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 2015 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 2016 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2074 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 2075 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 2134 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 2135 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 2194 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R +R++ F + + T TGR+ Sbjct: 2195 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 2249 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 +EPN+QN+P + T +G+ Sbjct: 2250 FIEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 2309 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ R +A Sbjct: 2310 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2369 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 2370 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2429 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 2430 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2489 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 2490 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2549 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 2550 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2590 >gi|255024155|ref|ZP_05296141.1| DNA polymerase I [Listeria monocytogenes FSL J1-208] Length = 280 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 114/283 (40%), Positives = 158/283 (55%), Gaps = 10/283 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S RAFYA PLL+ G+ NA+ GF ML +L+ + SH V Sbjct: 2 NKLVLIDGNSIANRAFYALPLLNNDK-GVYTNAVYGFAMMLMNVLEKEK----PSHVLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ + YK R K P L Q P +R A+ IP E+ +EADDII T Sbjct: 57 FDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKMV 180 T AE +G V II+ D+DL QL S T +Y T K E E + +K+ + PE+++ Sbjct: 117 TKKAEADGMEVAIITGDRDLTQLASGKTTVYITKKGIADMETNTPETLKEKYNLTPEQII 176 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGN-LENILINASRIKQKKRRENILEYAET 239 ++ L GDS DNIPGIPG+G KTA LL E+G +E++L +A I KK +E ++E E Sbjct: 177 DMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVVENKEL 236 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFT 282 A LS++L + D PI +E + ++I LK + FT Sbjct: 237 AILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFT 279 >gi|309810195|ref|ZP_07704040.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D] gi|308169467|gb|EFO71515.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D] Length = 681 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/319 (36%), Positives = 198/319 (62%), Gaps = 19/319 (5%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGRSSHDIASIAQK 511 LKK E+++ K ++K + + L R GI++ +DIML SY+ DS ++ D+ +A Sbjct: 364 LKKILEDKNIAKQVFDLKRNYVGLQRLGITLFNVTDDIMLASYIADSENNAGDLGVLANS 423 Query: 512 WLSY--TRKEIL---KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLL 566 + + EI+ ++ S+ +D + H +V+ +L + P+L + L Sbjct: 424 YQEFYVQSDEIIYGKGKKQHSVDVDTLY-----AHMATKVDVLDKLKAKIMPELQQHEQL 478 Query: 567 HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSP 626 H+Y+ ++ P+ ++++MEI GI++ L ++ ++ + L+ IY L+GEKFN++SP Sbjct: 479 HLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKFNINSP 538 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG ILF KLK KTKTG + T+ LE++ +PI+ +IL++RQ+SKI+STY + Sbjct: 539 KQLGVILFEKLKLTPAKKTKTG-YSTSVDVLEKLEY-QSPIVADILDYRQISKIQSTYIN 596 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKK-- 744 L ++I + ++HT + T TGRL+S+EPNLQNIP+K + G++IR+AF+ P K+ Sbjct: 597 GLLDYI-QADGKIHTRFLQTLTTTGRLSSVEPNLQNIPVKLEEGKQIRKAFV--PCKQDS 653 Query: 745 -LISADYSQIELRILAHIA 762 L S DYSQ+ELR+LAH++ Sbjct: 654 YLFSCDYSQVELRVLAHVS 672 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 163/300 (54%), Gaps = 19/300 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L ++ D GL NAI F NML LL+N + +H Sbjct: 4 LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD +TFRN++Y DYK R K P L QLP+++ GI + E+ +EADDI Sbjct: 57 MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 + + GF VTI++ D+DL QL + T K+ D+E H+ + +G+ Sbjct: 117 LGAMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++AL GD+ DN PG+ +G KTA+ L+ +YG++EN+ +IK K +E ++ Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A L +KL + P+ + ++ + L+ +L SF + L F K ++ + + D Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295 >gi|114588756|ref|XP_001165181.1| PREDICTED: DNA polymerase theta isoform 2 [Pan troglodytes] Length = 1762 Score = 196 bits (498), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 169/645 (26%), Positives = 285/645 (44%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 1122 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1181 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 1182 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1240 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 1241 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 1300 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 1301 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 1360 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R +R++ F + + T TGR+ Sbjct: 1361 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 1415 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 +EPN+QN+P + T +G+ Sbjct: 1416 FIEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 1475 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ R +A Sbjct: 1476 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 1535 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 1536 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 1595 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 1596 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 1655 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 1656 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 1715 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 1716 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 1756 >gi|317471924|ref|ZP_07931258.1| 5'-3' exonuclease [Anaerostipes sp. 3_2_56FAA] gi|316900590|gb|EFV22570.1| 5'-3' exonuclease [Anaerostipes sp. 3_2_56FAA] Length = 479 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 169/291 (58%), Gaps = 13/291 (4%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E L L+DG S + RAFYA P ++ GL NAI GF N+++K L + +HFAV Sbjct: 2 EKKLMLIDGHSILNRAFYALPDMTNSK-GLHTNAILGFLNIMFKFLDEEK----PTHFAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD A TFR+E++ +YK R +PE L Q+P+++ +A IP + +G+EADD++ T Sbjct: 57 AFDLSAPTFRHEMFKEYKGTRKPMPEELREQVPVIKEVLKAMDIPLMMEEGYEADDLLGT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPP 176 + I EKEG+ V IIS D+DL+QL + P T V E+ + V++ +G+ P Sbjct: 117 MSVIGEKEGYQVRIISGDRDLLQLATENVQIRIPKTKGGGNVVEDYF-AKDVMETYGVTP 175 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 ++ + ++AL GD+ DNIPGIPGIG KTA+ +++E+ ++EN + + K+ + + E+ Sbjct: 176 KEFIDMKALMGDASDNIPGIPGIGEKTASKIIKEFKSIENAYEHIEEVMPKRAKNKLEEF 235 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 + LS++L ++ D PI + E D LK LEF ++ + Sbjct: 236 YDQGVLSKELATIKLDCPIELSFEDAKFNDIFTGEAYQLLKQLEFKSVLKK 286 >gi|168211075|ref|ZP_02636700.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC 3626] gi|170710890|gb|EDT23072.1| DNA-directed DNA polymerase [Clostridium perfringens B str. ATCC 3626] Length = 642 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 162/573 (28%), Positives = 269/573 (46%), Gaps = 44/573 (7%) Query: 440 TGKNTL-TKEILSYLKKF-FENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVL 496 GKN ++++LK F F NE +K+ HNI ++ L YGI ++ D ML S + Sbjct: 75 NGKNVEDVHRMIAWLKGFVFHNESLIKVAHNISFESSFLCEYGIVIKEPVFDTMLGSML- 133 Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-------IDKISDSQVQ--EHAIENSN 547 + +S + ++ L KEI S D + + +A +S+ Sbjct: 134 -TFKSFGEFRTLRDSGLKLLAKEIFNEDLPSFSHVVNGTHFDNLHSEHKETVRYACADSD 192 Query: 548 VILQL--WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 L+L W + + + + V ER++ P M+ GI ++++LL++ + + Sbjct: 193 YALRLYNWCMEWFETYIPEHRLVCERVESPAAVYTGIMKKNGITLNKELLQEFNRRAEEE 252 Query: 606 LLSLEENIYDLSGEKFNLSSPKQ---LGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN- 661 L + I + + NL S Q D LF L+ P + G + L + Sbjct: 253 LEFCKREILSFANREVNLGSNLQTQDFKDFLFKDLRLPVLKICEKGDPSLDDESLILLEE 312 Query: 662 -CGDN-----PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT-FYSLASTMTGRLA 714 C N +I+ I +++SK+KSTY ++L +N T ++HT F+S+ + TGR + Sbjct: 313 WCIRNFKKGTYLIECIKRHKRVSKLKSTYIEALGKLLNCETGKIHTDFFSMGAE-TGRFS 371 Query: 715 SLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS 774 S PNLQN+P K + IR+ FI P + D+SQIELR+ A+ K + F Sbjct: 372 SRNPNLQNLPRKDNDHLGIRKLFIPSPNHVFLDFDFSQIELRVGAYYCKDRKMINAFMKD 431 Query: 775 LDIHRMVAAEIFGVNIEKVS-------PQMRRHAKTINFSIIYGISPFRLATQL------ 821 DIH + + I+ + +E+ + + R AK NF + +G+ P L L Sbjct: 432 FDIHGITTSIIYNIPLEEATDRNHEDFKKRRTIAKNCNFGVFFGLFPKGLQKTLMYKGGI 491 Query: 822 RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRN 881 I + I+ +P + + + T GY + GRR + ++ S + R Sbjct: 492 NISEKDCERIIRNIKDGYPRLSTWQKDTVKVAAYRGYTRSRTGRRRYLKDMKSKDWNKRA 551 Query: 882 INERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTAS 941 ++ER A+N PIQG+AADI + AM + + L + + K LLQIHDEL+FEV E+++ A Sbjct: 552 VSERCALNTPIQGTAADIIKIAMARILRELPE-RGYIKPLLQIHDELLFEVREDKVNEAI 610 Query: 942 QIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I ME+ P + +P+KV V N+ E Sbjct: 611 VFIKDCMERT--PFKDFNIPIKVEYSVGYNFDE 641 >gi|297285105|ref|XP_001111254.2| PREDICTED: DNA polymerase theta isoform 2 [Macaca mulatta] Length = 2672 Score = 196 bits (497), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 169/645 (26%), Positives = 284/645 (44%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 2032 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 2091 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 2092 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2150 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 2151 LQDVFRKVEMPSQYCLALLELNGIGFSTAECEGQKHIMQAKLDAIETQAYQLAGHSFSFT 2210 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 2211 SSDDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGNDNGRKLRLGRQFSTSKDVLNKLK 2270 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R +R++ F + + T TGR+ Sbjct: 2271 ALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRIT 2325 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 EPN+QN+P + T +G+ Sbjct: 2326 FTEPNIQNVPRDFEIKMPTLVGESPPSQAIGKGLLPMGRGKSKKGCSLNPGRQAQMEERA 2385 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ R +A Sbjct: 2386 ADRGMPFSISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2445 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 2446 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2505 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 2506 NQFMRETVKNCKRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKI 2565 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 2566 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLLRKRKLQGMFCPVRGGFFILQLHDELL 2625 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 2626 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2666 >gi|195329438|ref|XP_002031418.1| GM25985 [Drosophila sechellia] gi|194120361|gb|EDW42404.1| GM25985 [Drosophila sechellia] Length = 2006 Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 135/427 (31%), Positives = 224/427 (52%), Gaps = 37/427 (8%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 LL + ++ P+ + QME+ G + L+Q+ + + LE IY+ G +FNL Sbjct: 1594 LLKFFHDIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYEQHGSRFNLG 1653 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 S + + +L K G+ T+ Q LE++N +PI IL +R+LS + + Sbjct: 1654 SSQAVAKVLGLHRK-------AKGRVTTSRQVLEKLN---SPISHLILGYRKLSCLLAKS 1703 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN------IPIKTD-LGQKIRRAF 737 L + R+H S+ T TGR++ EPNLQN I + D + R F Sbjct: 1704 IQPLMECC--QADRIHG-QSITYTATGRISMTEPNLQNVAKEFCIQVGADAVNISCRSPF 1760 Query: 738 ISPPT---KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794 + PT + L+SAD+ Q+E+RILAH+++ L +V + D+ +AA + +V+ Sbjct: 1761 M--PTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIKESEVT 1818 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 P +R K + + I+YG+ LA L EA ++ + GI +Y + NF R Sbjct: 1819 PDLRNSTKQVCYGIVYGMGMRSLAESLNCSEQEARILSDQFHEAYKGIRDYTRRVVNFAR 1878 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 G+VETI GRR + + INS ++ ER A+N+ IQGSAADI + A++ + K++E + Sbjct: 1879 GKGFVETITGRRRYLEMINSDMEHLKKA-ERQAVNSTIQGSAADIAKNAILKMEKNIERY 1937 Query: 915 --KLA-----TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 KLA +++ +HDEL+FEVP + ++++ +ME +C + L VPLKV ++ Sbjct: 1938 REKLALGDKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITME-SC---VKLSVPLKVKLR 1993 Query: 968 VSNNWQE 974 + +W E Sbjct: 1994 IGRSWGE 2000 >gi|311068878|ref|YP_003973801.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942] gi|310869395|gb|ADP32870.1| DNA-directed DNA polymerase [Bacillus atrophaeus 1942] Length = 787 Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 166/586 (28%), Positives = 281/586 (47%), Gaps = 77/586 (13%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG--FEDIMLMSYVLDSG--RSSHD 504 ++ LK E + + HN K+D +L + GI++R + D M+ VL+ + Sbjct: 198 VMKKLKPHLEKKGTKLVLHNSKFDSHMLLKDGITIRNNIYFDTMIAHSVLNENDEKGLKA 257 Query: 505 IASIAQKWLSYTRKEI----LKSRKSSIPIDKISDSQVQEHAIENSNVILQL--WLLLRP 558 IA+ ++ + K + L S K S +A +++++ L+L W L Sbjct: 258 IATKYGRFFGFEDKSMSFGELFSNKPEAFYSNESMELCTFYACKDTHLCLKLYKWQLSMM 317 Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 K KL VY ++P+ V ME TG +ID E+ + LE+ + G Sbjct: 318 K-KQPKLYDVYFNYEQPLTPAVLAMEETGFEIDFSFADMYKTELQAEVSDLEQKMTRRFG 376 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 E NL+SP QL +L+ +LK P +G+ K A+ L+++ ++ + K ILE+R L+ Sbjct: 377 E-INLNSPAQLSALLYDELKLPD----ISGKRKADAKTLQKLVKHESDL-KLILEYRDLN 430 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 K+ +TY + LP +NK T ++H+ ++ ++T+T R AS +PNLQN+P K R+ + Sbjct: 431 KLLTTYVEPLPEKVNKNTGKLHSSFNQSATVTSRFASKDPNLQNLP------PKARKLIV 484 Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK------ 792 +P + DYSQIE R LAH++ L + N++D++ +A++IF + E Sbjct: 485 APKGYLIFGIDYSQIEPRTLAHMSGDAGLQYPYLNNIDLYASLASKIFKLPYEACLEADG 544 Query: 793 -------VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 + R+ K +++YGI+ LA L I EA ++ ++ +P + + Sbjct: 545 ETYKKAGLPKHPRKMMKVGLLAVMYGITVPSLAESLGISVPEAQKFMDDFYSSYPEMTAW 604 Query: 846 IEKTKNFVRQNGYVETIFGRR----------IHYDEINSPKSSI--------------RN 881 + K + GYVET+ GR+ HY +++ +I RN Sbjct: 605 MAKQVAHADETGYVETMQGRKRRFIGHTVIAKHYHALHAKVVNILGREPENIWREPLPRN 664 Query: 882 INE-------------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDEL 928 + + R ++NA IQGSAA + ++AMI+V+ LE KM+ IHDEL Sbjct: 665 LKKQYWEVNKDYQRVARMSVNAIIQGSAALMLKKAMIAVNAHLERKGAGWKMMATIHDEL 724 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +F +PE I + M+ + L VPLKV+ +V W E Sbjct: 725 LFLIPEAVTPEEIIEIENIMKDV----VKLDVPLKVDTEVMIRWGE 766 >gi|157786800|ref|NP_001099348.1| DNA polymerase theta [Rattus norvegicus] gi|149060535|gb|EDM11249.1| polymerase (DNA directed), theta (predicted), isoform CRA_a [Rattus norvegicus] Length = 2547 Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 174/651 (26%), Positives = 285/651 (43%), Gaps = 126/651 (19%) Query: 444 TLT-KEILSYLKKFFE----NEHFLKIGHNIKYDKLVLHRYGISMR-GFEDIMLMSYVLD 497 TLT KE + YL+ + E + I+ K++L GIS+ +ED + ++LD Sbjct: 1897 TLTVKERMEYLQSCLQKKSDQERSVVTYDFIQTYKVLLLSCGISLEPSYEDPKVACWLLD 1956 Query: 498 SGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI-----SDSQVQEHAIENSNVILQL 552 + SI +L + +L+ ++ I + +D + A S +I Sbjct: 1957 PDSKEPTLHSIVTSFLPH-ELALLEGIETGPGIQSLGLNVNTDHSGRYRASVESVLIFNS 2015 Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612 L L E L ++ +++ P ++ +E+ GI + + L ++E Sbjct: 2016 MNQLNSMLQKENLHDIFCKVEMPSQYCLALLELNGIGFSTAECETQKHIMQAKLDAIETQ 2075 Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT----------------------GQW 650 Y L+G F+ +S + +LF +LK P + KT G+ Sbjct: 2076 AYQLAGHSFSFTSADDIAQVLFLELKLPPNGEMKTQGGRKTLGSTRRGTESDRKLRLGRR 2135 Query: 651 KTTAQDLEQINCGDNPIIKNILEWRQLSK--IKSTYADSLPNHINK--RTQRVHTFYSLA 706 +T++D+ +P+ ILEWR++S K + H+N R +R++ S + Sbjct: 2136 FSTSKDILNKLKDLHPLPGLILEWRRISNAITKVVFPLQREKHLNPFLRMERIYPV-SQS 2194 Query: 707 STMTGRLASLEPNLQNIPIKTDL----------------------------------GQK 732 T TGR+ EPN+QN+P ++ GQ+ Sbjct: 2195 HTATGRITFTEPNIQNVPRDFEIKMPTLVRESPPSQASGKGQLAMARQNQKVYGLHPGQR 2254 Query: 733 ----------------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 +R AF+ P +++ADYSQ+ELRILAH+++ L QV + D Sbjct: 2255 TVLEKTSDRGVPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNSGAD 2314 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 + R +AAE + + V +R+ AK I + IIYG+ L Q+ I ++AA YI + Sbjct: 2315 VFRSIAAEWKMIEPDAVGDNLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFK 2374 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSA 896 R+ GI+ ++ T R++G+VETI GRR + I + ER AIN +QGSA Sbjct: 2375 SRYKGINHFMRDTVKNCRRDGFVETILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSA 2434 Query: 897 ADITRRAMISVHKSLE-------DHKLATKML--------------------------LQ 923 ADI + A +++ K LE H ML LQ Sbjct: 2435 ADIVKVATVNIQKQLETFHPTFKSHGHRESMLQSDRAGLLPKRKVKGMFCPMRGGFFILQ 2494 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDEL++EV EE++ +QI+ + ME A I L V LKV +K+ +W E Sbjct: 2495 LHDELLYEVAEEDVVQVAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 2541 >gi|847765|gb|AAC44593.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] Length = 242 Score = 195 bits (496), Expect = 3e-47, Method: Composition-based stats. Identities = 97/241 (40%), Positives = 154/241 (63%), Gaps = 5/241 (2%) Query: 733 IRRAFI-SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791 IR AF+ +L++ADYSQIE+RI+AH+++ L + F D+H VA+ F V I+ Sbjct: 1 IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPID 60 Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851 +V+P++RR K +++ + YG+S + +A QL+I EA +++YF RF G+ +Y+ + Sbjct: 61 EVTPELRRRVKAMSYGLAYGLSAYGVAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVVD 120 Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911 R++GY T+ GRR + E++S +R ERAA+NAPIQGSAADI + AMI+V +++ Sbjct: 121 QARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQAI 180 Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 +D L +++LLQ+HDEL+FEV E E Q++ M A L VPL+V++ + Sbjct: 181 KDAGLRSRILLQVHDELLFEVSEGERGELEQLVREHMGNA----YPLDVPLEVSVGYGRS 236 Query: 972 W 972 W Sbjct: 237 W 237 >gi|301786873|ref|XP_002928855.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Ailuropoda melanoleuca] Length = 2634 Score = 195 bits (495), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 170/650 (26%), Positives = 286/650 (44%), Gaps = 138/650 (21%) Query: 449 ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIAS 507 +LS ++ + E + I I+ K++L GIS+ + +ED + ++LD + S Sbjct: 1993 LLSCFQEESDKERSVIIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSKEPTLHS 2052 Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA---------IENSNVILQLWLLLRP 558 I +L + +L ++ I + + EH+ I N + QL LL+ Sbjct: 2053 IVSSFLPH-ELPLLDGIETGQGIQSLGLNVNSEHSGRYRASVESILTFNAMNQLNSLLKK 2111 Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 E L V+ +++ P ++ +E+ GI + + L ++E Y L+G Sbjct: 2112 ----ENLKDVFCKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAG 2167 Query: 619 EKFNLSSPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQD 656 F+ +S + ++LF +LK P +G K K G+ +T++D Sbjct: 2168 HSFSFTSSDDIAEVLFLELKLPPNGEIKNQNSKKTLGSTRRGNDNGRKLKLGKQFSTSKD 2227 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------AST 708 + +P+ ILEWR+++ + L +R +R++ F + + T Sbjct: 2228 VLNKLKALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHT 2282 Query: 709 MTGRLASLEPNLQNIP------IKTDLGQK------------------------------ 732 TGR+ EPN+QN+P + T +G+ Sbjct: 2283 ATGRVTFTEPNIQNVPRDFEIKMPTVVGESPPSQALGKGLLPMNRGKEKSCGINSGHQAQ 2342 Query: 733 ---------------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDI 777 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ Sbjct: 2343 MEERASDRGMPFSVSMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADV 2402 Query: 778 HRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFH 837 R +AAE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + Sbjct: 2403 FRSIAAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKS 2462 Query: 838 RFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAA 897 R+ GI+ ++ +T +++G+V+TI GRR + IN + ER AIN +QGSAA Sbjct: 2463 RYTGINHFMRETVKNCKRDGFVQTILGRRRYLPGINDNNPYHKAHAERQAINTTVQGSAA 2522 Query: 898 DITRRAMISVHKSLE-------DHKLATKML--------------------------LQI 924 DI + A +++ K LE H ML LQ+ Sbjct: 2523 DIVKVATVNIQKQLETFHSTFKSHGHREGMLQSERTGLLPKRKLQGVFCPIRGGFFILQL 2582 Query: 925 HDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 HDEL++EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 2583 HDELLYEVAEEDVVQVAQIVKNEMESA----MELSVKLKVKVKIGASWGE 2628 >gi|297670244|ref|XP_002813286.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase theta-like [Pongo abelii] Length = 2728 Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 171/646 (26%), Positives = 285/646 (44%), Gaps = 132/646 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 2087 SCLRKESDQECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 2146 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 2147 TSFLPH-ELPLLEGMETSQGIQSLGLNVGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2205 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK-NLLSLEENIYDLSGEKFNL 623 L V+ +++ P +S +E+ GI + I + L ++E Y L+G F+ Sbjct: 2206 LQDVFRKVEMPSQYCLSLLELNGIGFSTAECYESQKHIMQAKLEAIETQAYQLAGHSFSF 2265 Query: 624 SSPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQIN 661 +S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 2266 TSSDDIAEVLFLELKLPPNGEMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKL 2325 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRL 713 +P+ ILEWR+++ + L +R +R++ F + + T TGR+ Sbjct: 2326 KALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSHTATGRI 2380 Query: 714 ASLEPNLQNIP------IKTDLGQK----------------------------------- 732 EPN+QN+P + T +G+ Sbjct: 2381 TFTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGCSLNPRCQAQMEER 2440 Query: 733 -----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ R + Sbjct: 2441 AADRGMPFSISMRHAFVPFPGGLILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSI 2500 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ G Sbjct: 2501 AAEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTG 2560 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 2561 INQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTTVQGSAADIVK 2620 Query: 902 RAMISVHKSLE-------DHKLATKML--------------------------LQIHDEL 928 A +++ K LE H ML LQ+HDEL Sbjct: 2621 IATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSQKRKLQGMFCPIRGGFFILQLHDEL 2680 Query: 929 VFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 ++EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 2681 LYEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2722 >gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata] gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata] Length = 1786 Score = 194 bits (494), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 148/544 (27%), Positives = 288/544 (52%), Gaps = 38/544 (6%) Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSG 499 G+N L K +LK F+++ +K+ HN K+D L YG G D M+ S +L + Sbjct: 1271 GRNELIK--CEWLKNLFKSKDTVKVFHNGKFDINFLRVYGFEFEGPIFDTMVASKLLVAS 1328 Query: 500 RS-SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRP 558 R S + +++++L+ + + S ++ + Q+ ++ +S V+L L+++L Sbjct: 1329 RYISCKLTHVSERYLNIVLDKT--QQYSDWSTLQLFEEQLL-YSARDSFVLLPLYVILEH 1385 Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LS 617 L + L + ++ I S ME+ GI++D+D L+ + E+ + + ++Y L+ Sbjct: 1386 LLKINNLADI-ASVENKCILATSDMELNGIKVDEDKLRILQDELKQEHQEISNDLYSQLN 1444 Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677 + NL+S KQ+ + L +LK +K K + + + ++ NPII ++ E+R+ Sbjct: 1445 HSEINLNSQKQVLEKL-QELKIMDRSKKKIISDTSESTLIRNMS---NPIISSLREYRKA 1500 Query: 678 SKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAF 737 +K + + LPNHIN T+R++ Y+ +GR + PNLQ +P +K R F Sbjct: 1501 NKALTAFTQKLPNHINPITKRIYPNYNQLGAESGRFSCDGPNLQQVP----RDKKFRECF 1556 Query: 738 ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM 797 ++P K + AD+SQIELRI A IA + Q ++ ++D+H + A+ + +I +V+ + Sbjct: 1557 VAPKGSKFVIADFSQIELRIAAEIANDPKMIQAYQQNVDLHSLTASILKNKSINEVNKEE 1616 Query: 798 RRHAKTINFSIIYGIS--PFRLATQ----LRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851 R+ AK +NF +I+G+S R+ + L++ ++EA + +F+ F GI + KN Sbjct: 1617 RQLAKAVNFGLIFGMSINGLRMYAETGYNLKLTQTEAKEIYTSFFNNFKGILNWHNSVKN 1676 Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911 + V T+ R ++ + +S +N P+QG++ADIT+ M + S+ Sbjct: 1677 --SRPTMVRTLGNRLSVFESFSFTRS----------LNYPVQGTSADITKETMARLVDSV 1724 Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 + L K+++ +HDE++ EVPE+ A ++++ +M K+ K +VP++ + ++ Sbjct: 1725 K--PLNAKIIICVHDEIILEVPEDNAEKALKMLIDTMVKSG-EKYLKKVPVEAMGSIGDS 1781 Query: 972 WQEE 975 W ++ Sbjct: 1782 WADK 1785 >gi|125974156|ref|YP_001038066.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405] gi|125714381|gb|ABN52873.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405] Length = 640 Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 155/571 (27%), Positives = 265/571 (46%), Gaps = 42/571 (7%) Query: 440 TGKNTLTKE-ILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMR--GFEDIMLMSYVL 496 +G+N + I YLK FE++ +K+ HN+ ++ + L+ GI ++ ++ I L Sbjct: 70 SGRNAENQAAIWDYLKLLFESKDVIKVAHNLAFESMFLYARGIVLQKPCYDTIAASQLTL 129 Query: 497 DSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP-------IDKIS--DSQVQEHAIENSN 547 +S + S+A L + K+ + D+++ D + +A +S+ Sbjct: 130 ---KSKWEFRSLADSGLKTLAPALCKAEMTEFSTVTEGRFFDELNPQDEKTVRYACADSD 186 Query: 548 VILQLWLLLRPKL--IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKN 605 L+L+ + + K + E ++ P V M+ GI +D+ + + AE ++ Sbjct: 187 YTLRLYHVFNQWFDRFLPKHRTIVEEVESPTSVYVGIMKYNGILVDKSAMLKKQAEAAEK 246 Query: 606 LLSLEENIYDLSG--EKFNLSSPKQLGDILFTKLKFP---SGAKTKTGQWKTTAQDLEQI 660 ++S+ + I + G E +S LF L P + AK + T L++ Sbjct: 247 IVSIRKEIAGIIGNVEIGANASTSAFKKYLFVDLGLPVMKTTAKHQEAADDETMILLKEW 306 Query: 661 NCGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 + P + + + E+R+ K+KSTY D I++ T R+H T TGR AS Sbjct: 307 CATNRPELVRLFELVQEYRKWGKLKSTYIDGYLRFIDEDTGRIHPDLMPLGTETGRFASR 366 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PN+QN P K + +R+ I+P K L+S D+SQIELR+ A + + + + D Sbjct: 367 NPNMQNCPQKDNDPIGVRKFIIAPAGKVLLSLDFSQIELRVGAFYCRDKRMLETYRTGGD 426 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRH-------AKTINFSIIYGISPFRLATQLRIPR---- 825 IH + I+ + E+ + + H AK NF + YG+ P L L+ Sbjct: 427 IHAQTTSVIYRIPFEEAADKNAPHYKERRTIAKNCNFGVFYGLFPTGLQRTLKFKAGINP 486 Query: 826 --SEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 +E I+ +PG+ ++ ++ K + Y ET GRR + I S ++ Sbjct: 487 TLAECETIIQNLKSGYPGLAKWQDEVKKRAAVSCYSETWLGRRRYLLGIRSSDWGKKSFA 546 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER A+N PIQG+AADI + A + L + +L K +LQIHDELVFE+PE+++ A Sbjct: 547 ERCALNTPIQGTAADILKLACGRIISGLPE-RLWLKPMLQIHDELVFELPEDKVDEAVVF 605 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 I ME P + VP+ V N+ E Sbjct: 606 IKECMETQPFPAFD--VPIVAEASVGRNFGE 634 >gi|157888638|emb|CAE47762.2| novel protein similar to humna DNA-directed polymerase theta (POLQ) [Danio rerio] Length = 2239 Score = 194 bits (494), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 161/601 (26%), Positives = 276/601 (45%), Gaps = 107/601 (17%) Query: 473 KLVLHRYGISMRG-FEDIMLMSYVLDSG---RSSHD-IASIAQKWLSYTRKEILKSRKSS 527 K++L +++RG FED + ++LDS R+ H+ + S A + L S Sbjct: 1637 KILLLACELAVRGTFEDPKIACWLLDSSSKERTLHNMVTSFATEDLPLLEGISAGQGVQS 1696 Query: 528 IPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITG 587 + I + + A S ++ ++ L L + L V+++++ P ++ +E+ G Sbjct: 1697 LGIFGEASQPGRYRAAIESVLVFRVMTQLNCLLEKDGFLDVFKKVEMPTQYCLALLELNG 1756 Query: 588 IQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP------- 640 I + + L +LE Y L+G F+L+SP+ + ++LF +LK P Sbjct: 1757 IGFSIAECEAQKHVMQAKLSALESQAYQLAGHSFSLTSPEDVAEVLFLELKLPPNGDLNG 1816 Query: 641 ------------SGAKTK-TGQWKTTAQDLEQINCGDNPIIKNILEWRQ----LSKIKST 683 +GA+ K + Q+ TT LE++ +P+ ILEWR+ L+K+ Sbjct: 1817 LKNKKTLGYTRRAGARIKLSKQFSTTKDVLEKLK-PLHPLPGVILEWRRITNALTKVVFP 1875 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL-------------- 729 H + + R+H S + T TGR++ EPN+QN+P ++ Sbjct: 1876 LQREKKWHSHLKMDRIHPI-SQSHTATGRVSFTEPNIQNVPKDFEIQMPTLIEESQTSQN 1934 Query: 730 -GQKI--------------------------------RRAFISPPTKKLISADYSQIELR 756 G K+ R AF+ +++ DYSQ+ELR Sbjct: 1935 GGSKMWCKRTKINRQLAPLLKVSDKSPDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELR 1994 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 ILAH+++ L V + D+ + +AAE V+ V MR+ AK I + IIYG+ Sbjct: 1995 ILAHLSRDRRLLHVLNSGADVFKSIAAEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKS 2054 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L Q+ I ++AA YI+ + R+ GI ++ +T +NGYV+T+ GR+ I Sbjct: 2055 LGEQMGIEENDAACYIETFKSRYNGIQNFLRETVQKCGKNGYVKTLLGRKRFLPGIKDSN 2114 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-------------KLATK---- 919 I++ ER A+N +QGSAADI + A I++ + +E+ +L + Sbjct: 2115 VYIKSHAERQAVNTTVQGSAADIVKLATINIQRRIEEAFPGVPTSHQHPSIRLGGRHRNQ 2174 Query: 920 --------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 +LQ+HDEL++EV EE++ +QI+ ME + L V L+V +KV + Sbjct: 2175 FRPLRGGYFILQLHDELIYEVAEEDVIQVAQIVKREMESV----VKLYVKLRVKVKVGPS 2230 Query: 972 W 972 W Sbjct: 2231 W 2231 >gi|195500591|ref|XP_002097437.1| GE24491 [Drosophila yakuba] gi|194183538|gb|EDW97149.1| GE24491 [Drosophila yakuba] Length = 2043 Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 135/427 (31%), Positives = 221/427 (51%), Gaps = 34/427 (7%) Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 +LL + ++ P+ + ME G Q L+Q+ ++ + LE IY+ G +FNL Sbjct: 1629 QLLKFFHDIEMPIQLTLCHMEFVGFPAQQQRLQQLYQKMVAVMRKLETKIYEQHGSRFNL 1688 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 S + + +L K G+ T+ Q LE+IN +PI + IL +R K+ Sbjct: 1689 GSSQTVAKVLGLHRK-------ANGRVTTSRQVLEKIN---SPISQLILGYR---KVAGL 1735 Query: 684 YADSL-PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN------IPIKTD-LGQKIRR 735 A S+ P R+H S+ T TGR++ EPNLQN I + +D L R Sbjct: 1736 LAKSIQPLLKCCEADRIHG-QSITYTATGRISMTEPNLQNVAKEFCIQVGSDALRIACRL 1794 Query: 736 AFISPPTKK-LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794 F+ + L+SAD+ Q+E+RILAH+++ L +V + D+ +AA + +VS Sbjct: 1795 PFVPKDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIEESEVS 1854 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 +R K + + I+YG+ LA L EA +++ + GI EY + F R Sbjct: 1855 QDLRNSTKHVCYGIVYGMGMRSLAESLNCSEQEARMISEQFHQAYKGIREYTSRVVKFAR 1914 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 G+VETI GRR + D INS + ++N ER AIN+ IQGSAADI + A++ + K++E + Sbjct: 1915 NQGFVETITGRRRYLDNINSDEEQLKNQAERQAINSTIQGSAADIAKSAILKMEKNIERY 1974 Query: 915 K-------LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 + + +++ +HDEL+FEVP + ++++ +ME + L VPLKV ++ Sbjct: 1975 RDKLVLGDQSVDLIMHLHDELIFEVPAAKAKKIAKVLSLTMENC----VKLSVPLKVKLR 2030 Query: 968 VSNNWQE 974 + +W E Sbjct: 2031 IGRSWGE 2037 >gi|91091764|ref|XP_969311.1| PREDICTED: similar to DNA polymerase theta [Tribolium castaneum] gi|270001085|gb|EEZ97532.1| hypothetical protein TcasGA2_TC011380 [Tribolium castaneum] Length = 1588 Score = 194 bits (492), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 131/471 (27%), Positives = 240/471 (50%), Gaps = 49/471 (10%) Query: 516 TRKEILKSRKSSIPIDKISDSQVQE--------HAIENSNVILQLWLLLRPKLIVEKLLH 567 T +++++ +P+D+ D++++ H ++N V +L LL Sbjct: 1149 TLHQLVETYCPELPLDQGQDAKLRSIFECYLSWHVLKNIEV----------ELSKSNLLT 1198 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 V++ + ++ +++ +E+ GI + L + +++ L ++E + ++G F+ +S + Sbjct: 1199 VFDT-EMSIMRILANIELAGIGANVSTLSNLVDLLTRELKAIERQGHAIAGRHFSFASSR 1257 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QL IL Q ++ Q N DNP+ IL+WR KI +T + Sbjct: 1258 QLAKIL---------------QSDNNSKKSLQKN--DNPLASLILKWR---KISATIGKT 1297 Query: 688 LPNHIN-KRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ---KIRRAFISPPTK 743 L I R+ Y + T TGR+ EPNLQN+ D+ R+AF+ Sbjct: 1298 LQPLIRLVENGRIFGCY-VTHTATGRITMHEPNLQNVAKDFDIDGVEVSCRKAFVPSQGH 1356 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 ++SAD+ Q+ELR+LAH+++ L + DI R +AA+ ++ +V+ ++R+ AK Sbjct: 1357 VMVSADFCQLELRVLAHLSRDEVLGGILRRKGDIFRAIAAKWNNISENEVTEELRQRAKQ 1416 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 I + IIYG+ LA QL ++A +++ + + +PG+ +YI + R+ G+VET+ Sbjct: 1417 IIYGIIYGMGSKALAEQLNTDEAQATRFMQTFRNAYPGVQKYISEIIETCRKTGFVETLA 1476 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQ 923 GRR IN ++++ ER A+N IQGSAAD+ + AM+ + K K++L Sbjct: 1477 GRRRFLAHINHKNGAVKSQAERQAVNTTIQGSAADLVKMAMVRLETVFLGEK-EVKLVLH 1535 Query: 924 IHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +HDEL++EVPE + + +I+ ME + + L +P V +K +W + Sbjct: 1536 LHDELLYEVPEGSLGSFVRILKTEMEGS----VKLSIPFPVKVKSGPSWGQ 1582 >gi|169837915|ref|ZP_02871103.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a] Length = 552 Score = 194 bits (492), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 103/252 (40%), Positives = 163/252 (64%), Gaps = 5/252 (1%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L + D P+ ++ +ME G++I+ L +S EI K L++ I+D++G FN++ Sbjct: 304 LYKIATDFDFPLAPLLFKMEKRGVKINTSYLADMSHEIGKKYEELQQKIFDIAGYNFNIA 363 Query: 625 SPKQLGDILFTKLKFPSGA--KTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKS 682 SP QL D+LF KL+ P+ K KTG + T ++L ++ G +P+I+ I + R+L+K+K+ Sbjct: 364 SPAQLSDMLFIKLQLPTTGIKKGKTG-YSTGQKELNKLR-GLHPVIELIEQTRELAKLKN 421 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT 742 TY D+LP ++K R+HT ++ TGRL+S PNLQNIPI++ LG+KIR AFI+ Sbjct: 422 TYVDALPKLVDK-NYRLHTTFNQDVVSTGRLSSTHPNLQNIPIRSTLGKKIRNAFIADED 480 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 L+SADYSQ ELR+ A +A L F N +DIH A++++ + +++V+ RR+AK Sbjct: 481 NILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQVTSNQRRNAK 540 Query: 803 TINFSIIYGISP 814 INF ++YG+SP Sbjct: 541 VINFGVLYGMSP 552 Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 88/153 (57%), Gaps = 7/153 (4%) Query: 144 LMQLVSPTTCLYDTVKEEKIDIEH-----VIKKWGIPPEKMVCLQALTGDSIDNIPGIPG 198 ++QLVSP T +Y +K +IE + K GI + + L+AL GDS DNIPG+PG Sbjct: 1 MLQLVSPLTKVY-AMKRGLSNIEEYNPSILENKLGIKVSQFLDLKALKGDSSDNIPGVPG 59 Query: 199 IGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIP 258 IG KTA LL+E+ +L+NI N IK ++ +L E+A +SRK+ + D P+ Sbjct: 60 IGDKTAVALLKEFESLDNIYKNIEIIKPAWAKK-LLAGKESAYISRKVGQIWRDAPVDFD 118 Query: 259 LEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 L+ + + + + +L L+ LEF LI R+ T Sbjct: 119 LKSMDIHNLDVVKLSDQLRKLEFNSLIKRLPTA 151 >gi|225352868|ref|ZP_03743891.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156300|gb|EEG69869.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 244 Score = 193 bits (491), Expect = 1e-46, Method: Composition-based stats. Identities = 92/226 (40%), Positives = 147/226 (65%), Gaps = 1/226 (0%) Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPT-KKLISADYSQIELR 756 R+HT + TGRL+S++PNLQNIP + G++IR AF+ + L+S+DYSQ+ELR Sbjct: 16 RIHTTFEQTVAATGRLSSVDPNLQNIPNRDPAGREIRSAFVPGEGFESLLSSDYSQVELR 75 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFR 816 I+A ++ L + F + D H+ VA+ ++GV +++++P R H K +++ + YG+S + Sbjct: 76 IMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITPDQRSHVKAMSYGLAYGLSTYG 135 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 L+ QL I EA ++YF F +HEY+E + R+ GY ETI+GRR ++ + SP Sbjct: 136 LSQQLGIKPGEAESLKRQYFATFGKVHEYLESLVSSAREKGYTETIYGRRRYFPGLKSPN 195 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 ++R+ ERAA+NAPIQGSAADI + AMI +L + LA++++ Sbjct: 196 RAVRDAAERAALNAPIQGSAADIMKIAMIRADDALREAGLASRIIF 241 >gi|312074456|ref|XP_003139979.1| hypothetical protein LOAG_04394 [Loa loa] gi|307764861|gb|EFO24095.1| hypothetical protein LOAG_04394 [Loa loa] Length = 1001 Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 126/404 (31%), Positives = 213/404 (52%), Gaps = 24/404 (5%) Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 + S++E GI D + + + +++ + L +E YD+SG FN S ++ ILF +L+ Sbjct: 604 LFSEIETMGIAFDTNKAEILHSKLKQKLTDIEAKAYDISGIPFNFGSAAEISQILFVRLQ 663 Query: 639 FPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ- 697 P + + T L+Q+ + PII ILEWR++S +T SLP+ + Sbjct: 664 IPPPNLSTGRHYSTNKFVLQQL-APNYPIINLILEWRRISTALTT---SLPSLLKSCCSD 719 Query: 698 -RVHTFYSLASTMTGRLASLEPNLQNIPIKTDL-GQKIRRAFISPPTKKLISADYSQIEL 755 R+ T + + + TGR+ + PN+QN+ + G IR FI+P + L+S+DY Q+E+ Sbjct: 720 GRIRTNF-ITYSCTGRVLTENPNVQNVQKDGIIDGFSIRSLFIAPKGRILLSSDYRQLEM 778 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAA-----EIFGVNIEKVSPQMRRHAKTINFSIIY 810 R+LAH++ + L +F D ++ E V ++ R K + + IIY Sbjct: 779 RMLAHLSADSQLISLFLAEGDFFEIITNKWNTNETLPVKVD------RNKVKQLCYGIIY 832 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 G+ L+ +L I + A I +F +FP + +++K R +G+V T+ GRR Sbjct: 833 GMGSLSLSKELGIQKQHAQQMIISFFQQFPKVRTWMDKILAVCRADGFVSTLLGRRRFLP 892 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 +INS + ER AIN IQGS A++ + A++++ K+L + +++Q+HDE++ Sbjct: 893 QINSMLQTESAQAERQAINTCIQGSVAELFKMALLNLQKNLLGTN--SSIVMQMHDEVLV 950 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E E + + +II HSM + +P NLRVPL V I NW E Sbjct: 951 ETDESSVASVVEIIKHSM-TSVMP--NLRVPLAVKISSGKNWGE 991 >gi|76364226|gb|AAR08421.2| DNA polymerase theta [Homo sapiens] Length = 2590 Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 1950 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 2009 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 2010 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2068 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 2069 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 2128 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 2129 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 2188 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R + ++ F + + T TGR+ Sbjct: 2189 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 2243 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 EPN+QN+P + T +G+ Sbjct: 2244 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 2303 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ R +A Sbjct: 2304 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2363 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 2364 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2423 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 2424 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2483 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 2484 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2543 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 2544 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2584 >gi|119599916|gb|EAW79510.1| polymerase (DNA directed), theta, isoform CRA_a [Homo sapiens] Length = 2725 Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 2085 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 2144 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 2145 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2203 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 2204 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 2263 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 2264 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 2323 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R + ++ F + + T TGR+ Sbjct: 2324 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 2378 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 EPN+QN+P + T +G+ Sbjct: 2379 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 2438 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ R +A Sbjct: 2439 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2498 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 2499 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2558 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 2559 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2618 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 2619 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2678 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 2679 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2719 >gi|139394648|ref|NP_955452.3| DNA polymerase theta [Homo sapiens] gi|325511332|sp|O75417|DPOLQ_HUMAN RecName: Full=DNA polymerase theta; AltName: Full=DNA polymerase eta gi|225000062|gb|AAI72289.1| Polymerase (DNA directed), theta [synthetic construct] Length = 2590 Score = 193 bits (490), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 1950 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 2009 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 2010 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2068 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 2069 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 2128 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 2129 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 2188 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R + ++ F + + T TGR+ Sbjct: 2189 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 2243 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 EPN+QN+P + T +G+ Sbjct: 2244 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 2303 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ R +A Sbjct: 2304 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2363 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 2364 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2423 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 2424 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2483 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 2484 ATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2543 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 2544 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2584 >gi|260816346|ref|XP_002602932.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae] gi|229288246|gb|EEN58944.1| hypothetical protein BRAFLDRAFT_251779 [Branchiostoma floridae] Length = 2215 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 162/606 (26%), Positives = 273/606 (45%), Gaps = 113/606 (18%) Query: 470 KYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE--ILKSRKS 526 +Y L L GI+M G FED + ++LD G Q+ +T +E +L+ Sbjct: 1612 QYKALALG-CGITMNGDFEDPKVADWLLDPGAKVKSFHGTVQR---FTPQESYLLQGLGG 1667 Query: 527 SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHV------YERLDKPMIDVV 580 + ++ + VQ L+ L ++KLL + ++ P + + Sbjct: 1668 CFGVGSLAMT-VQNSGSGRMRAALECVLTFHMMEELDKLLEAQGLSTAFRDVEMPSLVTL 1726 Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 ++ME+ G + + L LEE Y L+G F L+SP + +LF +LK P Sbjct: 1727 ARMELNGAGFSPVECETQCQIMQAKLRMLEEQAYQLAGHTFALTSPDDIAQVLFLELKLP 1786 Query: 641 SGA---KTKTGQWKTT---------AQDLEQINCGDNPIIK---------NILEWRQLSK 679 + T Q + T + L+ ++ + + K ILEWR++S Sbjct: 1787 ANGDPSSTTNPQPRKTLGTARPARGRKPLKHLSTSKDVLEKLKKFHALPGVILEWRRISN 1846 Query: 680 --IKSTYADSLPNHINKR--TQRVHTFYSLASTMTGRLASLEPNLQNIP----------- 724 K + N R R++ L T TGR+ +PNLQNIP Sbjct: 1847 SLTKVVFPLQKEKVYNPRLNMDRIYGNCDL-HTATGRVTFHDPNLQNIPKDFEIEMPTII 1905 Query: 725 ----------------------------IKTD-LGQ----KIRRAFISPPTKKLISADYS 751 +++D GQ +R AFI L++ADYS Sbjct: 1906 GDSPPPGCGETVSKRKGRKVVRRTDGRRVESDGAGQAFSVSLRHAFIPFQGGVLLAADYS 1965 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYG 811 Q+ELRI+AH+++ + L QV + D+ + +A++ GV +E VS ++R+ AK + + +IYG Sbjct: 1966 QLELRIIAHLSQDSKLTQVLNSGQDVFKAIASQWKGVAMEDVSDKLRQQAKQLCYGMIYG 2025 Query: 812 ISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDE 871 I L QL + E A +I+ + ++ G+ Y+ T + +++G+V+T+ GRR + Sbjct: 2026 IGAKALGEQLGVDEEEGACFIETFKSKYTGMRRYLHTTVDQCKKDGFVQTMAGRRRYLPG 2085 Query: 872 INSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE--------DHKLATK---- 919 I +R ER A+N +QGSAAD+ ++AM+S+ + L+ H+ T+ Sbjct: 2086 ITEGNHHVRCHAERQAVNTTVQGSAADLVKKAMVSIDQKLQKLFPATRRSHRQDTQKRSR 2145 Query: 920 -------------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 ++LQ+HDEL++EV E++ +QI+ H ME A + L V L V + Sbjct: 2146 RSQQPSSPPRGAYLILQLHDELIYEVRREDVQQVAQIVKHEMENA----VKLSVVLPVKV 2201 Query: 967 KVSNNW 972 KV W Sbjct: 2202 KVGPTW 2207 >gi|119599919|gb|EAW79513.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens] gi|119599920|gb|EAW79514.1| polymerase (DNA directed), theta, isoform CRA_d [Homo sapiens] Length = 2270 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 1630 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1689 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 1690 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1748 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 1749 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 1808 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 1809 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 1868 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R + ++ F + + T TGR+ Sbjct: 1869 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 1923 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 EPN+QN+P + T +G+ Sbjct: 1924 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 1983 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ R +A Sbjct: 1984 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2043 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 2044 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2103 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 2104 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2163 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 2164 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2223 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 2224 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2264 >gi|300122531|emb|CBK23101.2| unnamed protein product [Blastocystis hominis] Length = 437 Score = 192 bits (489), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/387 (31%), Positives = 214/387 (55%), Gaps = 27/387 (6%) Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSS 625 L+ Y ++ ++ +++ M+ TG+ +D L++ I L LE+ L G + S Sbjct: 7 LNSYWNIELRLLPLLAHMDATGVNVDSAALQRNKMVIDPLLKDLEQKAEALVGHPILMWS 66 Query: 626 PKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 KQ+ ++L+ +LK P G + T T D +P ++E+R+LSK ST Sbjct: 67 SKQVCEVLYDELKLEAPKGNRVSTESVLQTMAD-------KHPFPGLVIEYRRLSKQMST 119 Query: 684 YADSLPNHI------NKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT-----DLGQK 732 Y D L + T+ +++ ++ +T TGRL++ PN+Q +P ++ +L Sbjct: 120 YIDGLEKEFVSVPFRSTETKLIYSTWNQMATGTGRLSTAAPNMQTLPKRSLERLSNLDVD 179 Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVF---ENSLDIHRMVAAEIFGVN 789 IR AF++ P ++LIS DY QIE+R+ AH + L +F +NS DI+ M+A+ I V Sbjct: 180 IRGAFVALPNRRLISVDYRQIEMRVFAHCSHDIALINLFSSGQNS-DIYTMIASMIHKVE 238 Query: 790 IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKT 849 ++ V+ + R AK I + YG+ +A++L+IP A +RF G+ ++++ T Sbjct: 239 VKDVTQKFRDEAKVITLGLCYGMGVESMASKLKIPILTATQLKNSILNRFKGVLQFMKNT 298 Query: 850 KNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 + R+ +VET+ GRR ++ +S + +I +R A+N+ IQGSAAD+ + AMI + K Sbjct: 299 ISSARKTHFVETLSGRRRYFKAKDSGGEGLAHI-DRQAVNSVIQGSAADLLKCAMILLWK 357 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEE 936 L + L ++++LQIHDELV + P+ + Sbjct: 358 PLSE--LDSEIILQIHDELVIDCPDSD 382 >gi|62089320|dbj|BAD93104.1| DNA polymerase theta variant [Homo sapiens] Length = 2214 Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 1574 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1633 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 1634 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1692 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 1693 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 1752 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 1753 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 1812 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R + ++ F + + T TGR+ Sbjct: 1813 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 1867 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 EPN+QN+P + T +G+ Sbjct: 1868 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 1927 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ R +A Sbjct: 1928 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 1987 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 1988 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2047 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 2048 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2107 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 2108 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2167 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 2168 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2208 >gi|153840365|ref|ZP_01993032.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] gi|149745970|gb|EDM57100.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] Length = 323 Score = 192 bits (488), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 111/291 (38%), Positives = 163/291 (56%), Gaps = 11/291 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L L+DGSS++YRAF+A P + + +P NA+ G NML +++ E IA V Sbjct: 6 ENPLILIDGSSYLYRAFHAYPG-TMSNGEIPTNAVYGVVNMLRSMMRQFASERIA----V 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E+Y +YKANRP +P+ L Q+ + +A G+P I + G EADD+I T Sbjct: 61 VFDAKGKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 Y A ++G V I + DKD+ QLV L +T+ +D E V++K+GIPPE ++ Sbjct: 121 LAYQASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYA 237 AL GD +DNIPG+PG+G KTA LLQ G L + N I K + +++ Sbjct: 181 ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLVDNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 + A LS +L ++ DV + E L+ + N LI L F +N + Sbjct: 241 DNAMLSYELATIKLDVELEETPESLLKAEPNKDELIKLYGQLTFKSWLNEL 291 >gi|328724318|ref|XP_003248103.1| PREDICTED: DNA polymerase theta-like isoform 1 [Acyrthosiphon pisum] Length = 1691 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 124/438 (28%), Positives = 234/438 (53%), Gaps = 34/438 (7%) Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 A+ N+ + L+L LR +L + ++ ++ P+ ++++ME+ G +++ L +++ Sbjct: 1281 AVFNAFITLKLMSTLRHQLKQIYIYKTFKDIEMPIQIILAKMELYGFGLNKKHLVELNDT 1340 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 ++K + ++ E ++ SG +FN+ S T +W + L+ + Sbjct: 1341 VNKLMANISEQGFEQSGIRFNMQS---------------------TLEWAKVKKKLKLTD 1379 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 + +++ + WR+LS +++T+ + ++ + RVH + S TGR++ EPNLQ Sbjct: 1380 SSSHLLVELVKNWRKLSCLRNTHINM---YLTIQNDRVHCDSNTYSN-TGRISMHEPNLQ 1435 Query: 722 NIPIKTDLGQKI---RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NIP + +I R AF+ + L+S D+ QIELR+LAH++K + L + D+ Sbjct: 1436 NIPKDYVIENEILSLRSAFVPKSDQTLVSVDFCQIELRVLAHLSKDSILLSALTSPGDVF 1495 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 ++++ + +V ++R+ K + + ++YG+ L+ L I + EA I + Sbjct: 1496 INLSSKWHNIPEIEVCDELRQKTKQVCYGMLYGMGTVTLSETLNITQDEAHKLISEFKRT 1555 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 FPG+++Y + R G V+T+ GR H+ +INS I++ ER AIN IQGSAAD Sbjct: 1556 FPGVNKYFNECVLQCRSMGLVKTLSGRIRHFPDINSEVPKIKSQVERQAINTIIQGSAAD 1615 Query: 899 ITRRAMISVHKSLEDHKLATK--MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 +T+ AMI V K + L T+ +++ +HDEL+F+V + A I+ +ME A + Sbjct: 1616 VTKMAMIKVDKIINQGVLNTRVHLVMHLHDELIFDVENTVLDEACSTIIKTMEAA----V 1671 Query: 957 NLRVPLKVNIKVSNNWQE 974 NL VPL V ++ ++W + Sbjct: 1672 NLCVPLPVKLRKGSSWGD 1689 >gi|328724320|ref|XP_003248104.1| PREDICTED: DNA polymerase theta-like isoform 2 [Acyrthosiphon pisum] Length = 1583 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 124/438 (28%), Positives = 234/438 (53%), Gaps = 34/438 (7%) Query: 542 AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 A+ N+ + L+L LR +L + ++ ++ P+ ++++ME+ G +++ L +++ Sbjct: 1173 AVFNAFITLKLMSTLRHQLKQIYIYKTFKDIEMPIQIILAKMELYGFGLNKKHLVELNDT 1232 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQIN 661 ++K + ++ E ++ SG +FN+ S T +W + L+ + Sbjct: 1233 VNKLMANISEQGFEQSGIRFNMQS---------------------TLEWAKVKKKLKLTD 1271 Query: 662 CGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQ 721 + +++ + WR+LS +++T+ + ++ + RVH + S TGR++ EPNLQ Sbjct: 1272 SSSHLLVELVKNWRKLSCLRNTHINM---YLTIQNDRVHCDSNTYSN-TGRISMHEPNLQ 1327 Query: 722 NIPIKTDLGQKI---RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIH 778 NIP + +I R AF+ + L+S D+ QIELR+LAH++K + L + D+ Sbjct: 1328 NIPKDYVIENEILSLRSAFVPKSDQTLVSVDFCQIELRVLAHLSKDSILLSALTSPGDVF 1387 Query: 779 RMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 ++++ + +V ++R+ K + + ++YG+ L+ L I + EA I + Sbjct: 1388 INLSSKWHNIPEIEVCDELRQKTKQVCYGMLYGMGTVTLSETLNITQDEAHKLISEFKRT 1447 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 FPG+++Y + R G V+T+ GR H+ +INS I++ ER AIN IQGSAAD Sbjct: 1448 FPGVNKYFNECVLQCRSMGLVKTLSGRIRHFPDINSEVPKIKSQVERQAINTIIQGSAAD 1507 Query: 899 ITRRAMISVHKSLEDHKLATK--MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKI 956 +T+ AMI V K + L T+ +++ +HDEL+F+V + A I+ +ME A + Sbjct: 1508 VTKMAMIKVDKIINQGVLNTRVHLVMHLHDELIFDVENTVLDEACSTIIKTMEAA----V 1563 Query: 957 NLRVPLKVNIKVSNNWQE 974 NL VPL V ++ ++W + Sbjct: 1564 NLCVPLPVKLRKGSSWGD 1581 >gi|119599917|gb|EAW79511.1| polymerase (DNA directed), theta, isoform CRA_b [Homo sapiens] Length = 1762 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 1122 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1181 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 1182 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1240 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 1241 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 1300 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 1301 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 1360 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R + ++ F + + T TGR+ Sbjct: 1361 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 1415 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 EPN+QN+P + T +G+ Sbjct: 1416 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 1475 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ R +A Sbjct: 1476 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 1535 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 1536 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 1595 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 1596 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 1655 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 1656 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 1715 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 1716 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 1756 >gi|194901634|ref|XP_001980357.1| GG17101 [Drosophila erecta] gi|190652060|gb|EDV49315.1| GG17101 [Drosophila erecta] Length = 2037 Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 134/426 (31%), Positives = 223/426 (52%), Gaps = 32/426 (7%) Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL 623 +LL + L+ P+ + ME G Q LL+Q+ ++ + LE I++ G +FNL Sbjct: 1623 QLLKFFHDLEMPLQLTLCHMEFVGFPAQQQLLQQLYQKMVAVVRKLETKIFEQHGSRFNL 1682 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKST 683 S + + +L K G+ T+ Q LE++N PI IL +R+L+ + + Sbjct: 1683 GSSQAVAKVLGLHRKI-------NGRVTTSRQVLEKLN---TPISHMILGYRKLAGLLAK 1732 Query: 684 YADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN------IPIKTD-LGQKIRRA 736 L + R+H S+ T TGR++ EPNLQN I + +D + R Sbjct: 1733 SIQPLLKCC--QADRIHG-QSITYTATGRISMAEPNLQNVAKEFCIQVGSDAVNISCRLP 1789 Query: 737 F-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSP 795 F + + L+SAD+ Q+E+RILAH+++ L +V +S D+ +AA + +VS Sbjct: 1790 FMLKDEDRCLLSADFCQLEMRILAHLSQDKGLLKVMNSSQDLFIAIAAHWNKIEESEVSQ 1849 Query: 796 QMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 +R K + + I+YG+ LA L EA +++ + GI EY + F R Sbjct: 1850 NLRNSTKQVCYGIVYGMGMRSLAESLNCSEEEARLISEQFHQAYTGIREYTMRVVKFARN 1909 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 G+VETI GRR + D INS + ++N ER AIN+ IQGSAADI + A++ + K+LE ++ Sbjct: 1910 QGFVETITGRRRYLDNINSDQEHLKNQAERQAINSTIQGSAADIAKSAILKMEKNLERYR 1969 Query: 916 ----LATK---MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 L K +++ +HDEL+FEVP + ++++ +M+ + L VPL+V +++ Sbjct: 1970 DKLGLGDKSVDLVMHLHDELIFEVPAAKSKKIAKVLSVTMQNC----VKLTVPLQVKLRI 2025 Query: 969 SNNWQE 974 +W E Sbjct: 2026 GRSWGE 2031 >gi|195571339|ref|XP_002103661.1| GD20546 [Drosophila simulans] gi|194199588|gb|EDX13164.1| GD20546 [Drosophila simulans] Length = 967 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 134/427 (31%), Positives = 224/427 (52%), Gaps = 37/427 (8%) Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 LL + ++ P+ + QME+ G + L+Q+ + + LE IY+ G +FNL Sbjct: 555 LLKFFHDIEMPIQLTLCQMELVGFPAQKQRLQQLYQRMVAVMKKLETKIYEQHGSRFNLG 614 Query: 625 SPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTY 684 S + + +L K G+ T+ Q LE++N +PI IL +R+LS + + Sbjct: 615 SSQAVAKVLGLHRK-------ARGRVTTSRQVLEKLN---SPISHLILGYRKLSCLLAKS 664 Query: 685 ADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQN------IPIKTD-LGQKIRRAF 737 L + R+H S+ T TGR++ EPNLQN I + +D + R F Sbjct: 665 IQPLMECC--QADRIHG-QSITYTATGRISMTEPNLQNVAKEFCIQVGSDAVNISCRSPF 721 Query: 738 ISPPT---KKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS 794 + PT + L+SAD+ Q+E+RILAH+++ L +V + D+ +AA + +V+ Sbjct: 722 M--PTDEDRCLLSADFCQLEMRILAHMSQDKALLEVMNSPQDLFIAIAAHWNKIKESEVT 779 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 P +R K + + I+YG+ LA L EA ++ + GI +Y + NF R Sbjct: 780 PDLRNSTKQVCYGIVYGMGMRSLAESLNCSEQEARIISDQFHEAYKGIRDYTRRVVNFAR 839 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 G+VETI GRR + + NS ++ ER A+N+ IQGSAADI + A++ + K++E + Sbjct: 840 GKGFVETITGRRRYLEMTNSDMEHLKKA-ERQAVNSTIQGSAADIAKNAILKMEKNIERY 898 Query: 915 --KLA-----TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIK 967 KLA +++ +HDEL+FEVP + ++++ +ME +C + L VPLKV ++ Sbjct: 899 REKLALGDKSVDLVMHLHDELIFEVPTGKAKKIAKVLSITME-SC---VKLSVPLKVKLR 954 Query: 968 VSNNWQE 974 + +W E Sbjct: 955 IGRSWGE 961 >gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 597 Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 159/540 (29%), Positives = 279/540 (51%), Gaps = 38/540 (7%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSG-RSSHDIAS 507 LS LK N LK+ N K+D VL G+ G F D+ML S VL SG + HD+ S Sbjct: 78 LSPLKALL-NSSALKVFQNGKFDWQVLEMAGLRPSGPFFDVMLASQVLRSGLKKDHDLQS 136 Query: 508 IAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 + ++L ++ KS +SS K+S SQ+ E+A ++ V+L+L L KL LL Sbjct: 137 LTFEFLGI---KLDKSLQSSNFAGKLSASQL-EYAALDAAVLLKLRARLHSKLRSAGLLE 192 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +++ + V+QME+ G+ +D + V E+ + + +L + Sbjct: 193 T-AKIEFAAMPAVAQMELNGMLLDVEQWHLVGEELKAQK---QATLVELVKAGLKPAPSA 248 Query: 628 QLG---DILFT-----KLKFPSGAKTKTGQWKTTAQDLEQINCGDN-PIIKNILEWRQLS 678 QL D++ T ++ S + K+T++ E I P+I+ +L +R+L+ Sbjct: 249 QLSLFPDMVETINPRSSVQVLSALQALNIPIKSTSKS-ELIPIARQYPVIQLLLNYRKLA 307 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 + S +A++LP HI++ T R+H Y +GR + +PNLQN+P + + +R FI Sbjct: 308 SLCSNFAEALPKHIHQITGRIHPSYRQCGARSGRFSCKQPNLQNVPRNCTV-KGMRACFI 366 Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 +PP ++I ADYSQIELRI+A I+ + + D+H + A+ I G +E+V+ + R Sbjct: 367 APPGYQIIKADYSQIELRIVAEISGDAKMLDAYVKGEDLHTLTASLITGKLLEEVTTEDR 426 Query: 799 RHAKTINFSIIYGISPFRLAT------QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852 R AK++NF +IYG+ +L + + EA ++ KR+F + G+ + + Sbjct: 427 RIAKSVNFGLIYGMGAAKLQAYAEEKYDVLLTLEEAKEFRKRFFQAYSGVKRW----HDS 482 Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912 +R+ YV+ I R R ++E +N P+QG++AD+ + A+ + K L Sbjct: 483 IRRTVYVKDIKQIRTIGGRRRRWAKKPR-LSE--LLNHPVQGTSADMLKVAIARLFKLLP 539 Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 K K++ +HDE++ E P+ + S I+ M +A + +VP++V +K++++W Sbjct: 540 --KTGAKLIAVVHDEILLECPQTTLKRTSCILKKVMVEAGELYLQ-QVPVEVEVKIASSW 596 >gi|224143022|ref|XP_002324822.1| predicted protein [Populus trichocarpa] gi|222866256|gb|EEF03387.1| predicted protein [Populus trichocarpa] Length = 646 Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 146/462 (31%), Positives = 226/462 (48%), Gaps = 50/462 (10%) Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611 LW LL E L + ++ P+++V++ ME+ GI +D + + K L LE+ Sbjct: 174 LWKLL----TSEGLFEALKNIEIPLVNVLADMELWGIGVDMEGCLNARTVLGKRLRYLEK 229 Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC--GDNPIIK 669 Y L+G F+L + + +IL+ LK P G+ K + D ++ ++PI+ Sbjct: 230 KAYKLAGMTFSLYTAADIANILYRHLKLPIPEGHNKGK-KHPSTDKHCLDLLRHEHPIVP 288 Query: 670 NILEWRQLSKIKSTYADSLPN--HINKRTQR--VHTFYSLASTMTGRLASLEPNLQNIPI 725 I E R L+K+ ++ S+ + ++ TQ+ +H + ST TGRL+ EPNLQ + Sbjct: 289 VIREHRTLAKLLNSTLGSICSLARLSMETQKYTLHGHWLQTSTATGRLSIEEPNLQCVEH 348 Query: 726 KTDLGQ--------------KIR-RAFISPPTKK--LISADYSQIELRILAHIAKITPLY 768 D KI R F P L++ADYSQIELR++AH +K T L Sbjct: 349 AVDFEMSSDKEGDDAEPEHYKINARDFFVPTQDNWLLLTADYSQIELRLMAHFSKDTALI 408 Query: 769 QVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 ++ D+ ++AA G VS R K + + I+YG+ LA QL E Sbjct: 409 KLLTKPHGDVFNLIAARWTGKPEASVSSVERDQTKRMVYGILYGMGANTLAEQLDCSSDE 468 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 AA+ IK + FPG+ ++ + R+ GYVETI GR+ +I S ++ +R A Sbjct: 469 AAEKIKSFKSSFPGVASWLHEAVASCREKGYVETIKGRKRFLSKIKFGNSEEKSKAQRQA 528 Query: 888 INAPIQGSAADITRRAMISVHKSLEDH-----------------KLATKMLLQIHDELVF 930 +N+ QGSAAD+ + AMI++H + D K ++LLQ+HDELV Sbjct: 529 VNSICQGSAADLIKIAMINIHSLIVDGVGRPESSSLHANKFHMLKGQCRILLQVHDELVL 588 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 EV I A+ ++ SME A +L VPL V +KV W Sbjct: 589 EVDPSLINEAAVLLQMSMEDAA----SLLVPLHVKLKVGRTW 626 >gi|289548726|ref|YP_003473714.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein [Thermocrinis albus DSM 14484] gi|289182343|gb|ADC89587.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein [Thermocrinis albus DSM 14484] Length = 290 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 94/213 (44%), Positives = 144/213 (67%), Gaps = 6/213 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L+L+DGS+F+YR+F+A P LS K DG P A+ GF L ++++ + + + AV+FD Sbjct: 4 LYLLDGSAFLYRSFFALPPLSTK-DGFPTGAVYGFLRALLSIIKSEKPQ----YMAVVFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +P+ T R + Y YK NRP +P+ L Q+P+++ T GIP +E++G+EADDIIA T+ Sbjct: 59 HPSPTVRKKEYAHYKTNRPTMPDPLKVQIPVIKELTVLLGIPLVEMEGYEADDIIAALTH 118 Query: 127 IAEKEGFAVTIISTDKDLMQLV-SPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 A +EGF V I S DKD++QLV + + + +K E +D V++K+G+PPEK+ AL Sbjct: 119 RALEEGFKVRIYSPDKDILQLVKNEQVVVINPIKGEVLDERKVMEKFGVPPEKLADYLAL 178 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218 GD +DN+ G+ G+G KTA +L+ YG++ENIL Sbjct: 179 VGDKVDNVEGVKGVGPKTALKVLEAYGSVENIL 211 >gi|321475795|gb|EFX86757.1| hypothetical protein DAPPUDRAFT_312857 [Daphnia pulex] Length = 1781 Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 137/454 (30%), Positives = 230/454 (50%), Gaps = 29/454 (6%) Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 +E + +L ++ L+ +L E+LL + ++ PM+ + +ME GI D+ + + Sbjct: 1330 REKILHECCALLDIFHQLKQRLSKEELLQPFVDVEMPMVATMLRMEQIGIAFDRSNCELI 1389 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT---------KLKFPSGAKTKTGQ 649 + +L LEE + L+G F+L+S K++ I+ + F + K K Sbjct: 1390 LQILRNHLKMLEEAAHRLAGRSFSLTSTKEVSKIVASLNLCIEEKNPQSFINPLKKKFQP 1449 Query: 650 WKTTAQDLEQINCGD-NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLAS- 707 + L I G +P+ + ++E+R++S I T L + T V +A Sbjct: 1450 LSVSKASL--IKLGRIHPLPRVVVEFRKVSAIIQTIICPL---LQASTFHVSGVERIAGE 1504 Query: 708 ----TMTGRLASLEPNLQNIPIKTDLGQ----KIRRAFISPPTKKLISADYSQIELRILA 759 TGR+ ++PNLQ+IP L +R AF + L+SADYSQ+ELRILA Sbjct: 1505 CEFRNATGRVNIVQPNLQHIPRPFSLSDGRMINVRSAFHAATGTTLLSADYSQLELRILA 1564 Query: 760 HIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 H+++ T L + + D+ R + + E V+ R+ AK I + I+YG+ LA Sbjct: 1565 HLSEDTGLCSILSKPNGDVFRGIVSVWKKKKQEDVTDDERQQAKQICYGIVYGMGCKSLA 1624 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 QL + EA ++ + +P I ++I T N R G+V T+ GRR INS ++ Sbjct: 1625 EQLEVSEEEAQLFVDSFHSTYPNIQKFITNTINMCRSKGFVITLLGRRRFLPSINSNNAA 1684 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEIT 938 R ER A+N IQGSAAD+ + A+I +++SL++ ++ QIHDEL+FE+P + Sbjct: 1685 QRAQAERQAVNTKIQGSAADLVKTAVILLNRSLKEKLSDVHLVHQIHDELLFEIPTNCVE 1744 Query: 939 TASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 A++++ H ME A I +++ + V IK W Sbjct: 1745 RAARVVRHCMETA----IPMKIRIPVAIKTGKTW 1774 >gi|4163931|gb|AAD05272.1| DNA polymerase eta [Homo sapiens] Length = 1154 Score = 190 bits (483), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 166/643 (25%), Positives = 281/643 (43%), Gaps = 131/643 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 516 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 575 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 + + +L+ ++S I + + EH A S +I L L E Sbjct: 576 TSFFPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 634 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 635 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 694 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 695 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 754 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R + ++ F + + T TGR+ Sbjct: 755 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 809 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 EPN+QN+P + T +G+ Sbjct: 810 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 869 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ R +A Sbjct: 870 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 929 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 930 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 989 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 990 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 1049 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 1050 ATVNIQKQLETFHSTFKSHGHREGMLQSDQTGLSRKRKLQGMFCPIRGGFFILQLHDELL 1109 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +EV EE++ +QI+ + ME A + L V LKV +K+ +W Sbjct: 1110 YEVAEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASW 1148 >gi|326677806|ref|XP_694437.5| PREDICTED: DNA polymerase theta [Danio rerio] Length = 2593 Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 180/707 (25%), Positives = 312/707 (44%), Gaps = 125/707 (17%) Query: 385 ETIGSASFKIITDTM-----DAF----HSKPIAIAIS-TLDQKDD--TSFKVETIFIDLS 432 ET+ FK T M D F + + I IS + KD S + E + D+S Sbjct: 1885 ETVIGGKFKKPTTPMRNKRKDGFLLKGYEDLVVIGISVSWGAKDAYFVSLQQELVDTDIS 1944 Query: 433 VHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHN-IKYDKLVLHRYGISMRG-FEDIM 490 + +E L ++ + + + + ++ I K++L +++RG FED Sbjct: 1945 ASLAPPPLDDTLTVEERLKQIQSCLQKDSSVTVTYDFIHLYKILLLACELAVRGTFEDPK 2004 Query: 491 LMSYVLDSG---RSSHD-IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 + ++LDS R+ H+ + S A + L S+ I + + A S Sbjct: 2005 IACWLLDSSSKERTLHNMVTSFATEDLPMLEGISAGQGVQSLGIYGEASQPGRYRAAIES 2064 Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 ++ ++ L L + L V+++++ P ++ +E+ GI + + L Sbjct: 2065 VLVFRVMTQLNCLLEKDGFLDVFKKVEMPTQYCLALLELNGIGFSIAECEAQKHVMQAKL 2124 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-------------------SGAKTK- 646 +LE Y L+G F+L+SP+ + ++LF +LK P +GA+ K Sbjct: 2125 SALESQAYQLAGHSFSLTSPEDVAEVLFLELKLPPNGDLNGLKNKKTLGYTRRAGARIKL 2184 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQ----LSKIKSTYADSLPNHINKRTQRVHTF 702 + Q+ TT LE++ +P+ ILEWR+ L+K+ H + + R+H Sbjct: 2185 SKQFSTTKDVLEKLK-PLHPLPGVILEWRRITNALTKVVFPLQREKKWHSHLKMDRIHPI 2243 Query: 703 YSLASTMTGRLASLEPNLQNIP-------------IKTDLGQKIRRAFISPPTKK----- 744 S + T TGR++ EPN+QN+P +T + +IS K+ Sbjct: 2244 -SQSHTATGRVSFTEPNIQNVPKDFEIQMPTLIEESQTSQNGGSKMWYISASCKRTKINR 2302 Query: 745 ----------------------------------LISADYSQIELRILAHIAKITPLYQV 770 +++ DYSQ+ELRILAH+++ L V Sbjct: 2303 LLAPLLKVSDKSPDKGMQFSVSMRHAFVPFSGGLILAVDYSQLELRILAHLSRDRRLLHV 2362 Query: 771 FENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAAD 830 + D+ + +AAE V+ V MR+ AK I + IIYG+ L Q+ I ++AA Sbjct: 2363 LNSGADVFKSIAAEWKMVDPASVDDNMRQQAKQICYGIIYGMGAKSLGEQMGIEENDAAC 2422 Query: 831 YIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINA 890 YI+ + R+ GI ++ +T +NGYV+T+ GR+ I I++ ER A+N Sbjct: 2423 YIETFKSRYNGIQNFLRETVQKCGKNGYVKTLLGRKRFLPGIKDSNVYIKSHAERQAVNT 2482 Query: 891 PIQGSAADITRRAMISVHKSLEDH-------------KLATK------------MLLQIH 925 +QGSAADI + A I++ + +E+ +L + +LQ+H Sbjct: 2483 TVQGSAADIVKLATINIQRRIEEAFPGVPTSHQHPSIRLGGRHRNQFRPLRGGYFILQLH 2542 Query: 926 DELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 DEL++EV EE++ +QI+ ME + L V L+V +KV +W Sbjct: 2543 DELIYEVAEEDVIQVAQIVKREMESV----VKLYVKLRVKVKVGPSW 2585 >gi|311261782|ref|XP_003128859.1| PREDICTED: DNA polymerase nu-like [Sus scrofa] Length = 1413 Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 127/402 (31%), Positives = 214/402 (53%), Gaps = 43/402 (10%) Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF----PSGAKTKTGQWKTTA------ 654 L LE+ + ++GE+F ++S QL ++LF KLK P + G + + Sbjct: 959 RLKELEQEAHFVAGEQFLITSNSQLREMLFGKLKLHLLHPRATLPRMGLQRPPSTSDTVL 1018 Query: 655 ---QDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 QDL +P+ + ILE+RQ+ KIKST+ D L H+ K + V + ++ T+TG Sbjct: 1019 SALQDL-------HPLPRIILEYRQVHKIKSTFVDGLRAHMKKGS--VSSVWNQTGTVTG 1069 Query: 712 RLASLEPNLQNI---PI--------KTDLGQKI----RRAFISPPTKKLISADYSQIELR 756 RL++ PN+Q I PI K + G + R F+SP + ++AD+SQIELR Sbjct: 1070 RLSAKRPNMQGISKLPIQIGAPRNAKGEAGDALTVSARSLFVSPEGRSFLAADFSQIELR 1129 Query: 757 ILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISP 814 ILAH++ L ++F+ D+ + ++ G++ E V+ R K + ++++YG Sbjct: 1130 ILAHLSGDPELLKLFQEPERDDVFSALTSQWKGISPEHVTQADREQTKKVVYAVVYGAGR 1189 Query: 815 FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS 874 RLA L + EAA + + + ++ I ++ + T Q GYVE++ GRR I + Sbjct: 1190 ERLAACLGVTLREAARFGESFLQKYKKIKDFTQATIARCHQTGYVESVMGRRRPLPRIRA 1249 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK-LATKMLLQIHDELVFEVP 933 +R ER A+N +QGSAAD+ + AMI + ++ L +++ QIHDEL+FEV Sbjct: 1250 RDQKLRAQAERQAVNFVVQGSAADLCKMAMIRIFAAVATSPTLTARLVAQIHDELLFEVE 1309 Query: 934 EEEITTASQIIVHSMEK-ACLPKIN--LRVPLKVNIKVSNNW 972 + +I + ++ +ME +P + L+VPLKV++ +W Sbjct: 1310 DSQIPEFAALVRGAMEALQEVPALGLQLQVPLKVSLSTGRSW 1351 >gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus pumilus ATCC 7061] gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus pumilus ATCC 7061] Length = 744 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 171/645 (26%), Positives = 312/645 (48%), Gaps = 73/645 (11%) Query: 370 KIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI 429 K V ++ + ++K+ ++ +ITD K +A ++ L+ +++ F VET + Sbjct: 93 KTVQAQNREDKLRKMVEETPENYWLITD------EKRLAEFVALLENEEEIVFDVETTGV 146 Query: 430 DL---------------SVHT---SQDSTGKNTLTKEILS-YLKKFFENEHFLKIGHNIK 470 D+ VH ++ T L++++++ L+ F+E+ K+ HN K Sbjct: 147 DVWNDYIVGHVITAIKADVHAYIPTRHKTILPQLSRDLVNETLRPFYEDPTVGKLAHNAK 206 Query: 471 YDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKWL---SYTRKEILKSRKS 526 +D +L R GI +RG D +L+ S + ++ K+L S T ++ Sbjct: 207 FDIHMLDREGIKLRGLTWDTQEAMRLLNENEPSFALKNLVTKYLRIESSTYGDLF----G 262 Query: 527 SIPIDKISDSQVQ-EHAIENSNVILQLWLLLRPKLI-VEKLLHVYERLDKPMIDVVSQME 584 I D++ D ++ +A ++ +V L+L R L + ++L YE ++ P+I VV QME Sbjct: 263 KIGFDEVDDLEIALAYAAKDGDVTLKLRNFQREHLAKMPEVLRYYETVEVPLISVVQQME 322 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 TG ID D ++ E+ L L + + + G+ N++SP QL L + Sbjct: 323 TTGFDIDLDYAEEYGRELKSGLDRLYDELIEELGD-VNINSPAQLKPAL----------E 371 Query: 645 TKTGQ--WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTF 702 TG+ T A+ + + P++K +LE++ K+ STY ++LP I+++T +++T Sbjct: 372 RVTGESLASTDAKKVLKPLAKKYPVVKKLLEYKDSFKLYSTYINALPELIDQKTGKLYTN 431 Query: 703 YSLASTMTGRLAS--LEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 ++ TGR +S NLQN P +K R+ F++P ++ D+SQ E R LA+ Sbjct: 432 FNPNGAKTGRFSSGGTGVNLQNQP------KKARKLFVAPEGYAILGGDWSQQEYRCLAY 485 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQ--MRRHAKTINFSIIYGISPFRLA 818 + L + D++ +AAE+FG IE+ R+ AK I ++ YG L Sbjct: 486 FTQDPKLVDNYFRGDDLYASIAAEVFGKPIEECGDGSVYRKQAKVIMLAVAYGGGANMLK 545 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF---GRRIHYDEINSP 875 + + + EA ++ +F RFP + E++E + FV+++G+V RR+ + S Sbjct: 546 DAIGVEKHEAQKFLDSFFERFPVVKEWVESNQKFVKKHGFVWMDHLQRKRRLPDAKDRSA 605 Query: 876 KSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT-----KMLLQIHDELVF 930 K + ++ NA +QGSAA T+ MI++ + L D K A ++ +HDE + Sbjct: 606 KGHYSAVFTQST-NARVQGSAAIQTKATMIALQE-LCDRKTAEGRGEWRLWCVVHDEALL 663 Query: 931 EVPEEEITTASQIIVHSMEKACLPK-INLRVPLKVNIKVSNNWQE 974 VP+ T +Q V E + + +P K +I++S W E Sbjct: 664 LVPD----TLTQQDVKDFEDVMVNTYVFGNIPNKTDIEISRRWGE 704 >gi|194222793|ref|XP_001502374.2| PREDICTED: similar to polymerase (DNA directed), theta [Equus caballus] Length = 2701 Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 163/626 (26%), Positives = 276/626 (44%), Gaps = 130/626 (20%) Query: 469 IKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSS 527 I+ K++L GIS+ + +ED + ++LD + SI +L + +L+ ++ Sbjct: 2080 IQSYKILLLSCGISLEQSYEDPKVACWLLDPDSKEPTLHSIVTSFLPH-ELPLLEGIETG 2138 Query: 528 IPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQ 582 I + + EH A S +I L L E L ++ +++ P ++ Sbjct: 2139 QGIQSLGLNVDTEHSGRYRASVESILIFNSMNQLNSLLKKENLQDIFCKVEMPSQYCLAL 2198 Query: 583 MEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-- 640 +E+ GI + + L ++E Y L+G F+ +S + ++LF +LK P Sbjct: 2199 LELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLFLELKLPPN 2258 Query: 641 --------------------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 +G K + G+ +T++D+ +P+ ILEWR+++ Sbjct: 2259 GEMKNQGGKKTLGSTRRGNDNGRKLRLGKQFSTSKDILNKLKALHPLPGLILEWRRITNA 2318 Query: 681 KSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLASLEPNLQNIP----IKT- 727 + L +R +R++ F + + T TGR+ EPN+QN+P IK Sbjct: 2319 ITKVVFPL-----QRAKRLNPFLGMERIYPVSQSHTATGRITFTEPNIQNVPRDFEIKMP 2373 Query: 728 -----------------------------DLGQK-----------------IRRAFISPP 741 +LG + +R AF+ P Sbjct: 2374 TLVGESPPSQALGKGLLPMGRGNEKSHGLNLGHQAQTEERASDRGMPFSVSMRHAFVPFP 2433 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 +++ADYSQ+ELRILAH+++ L QV D+ R +AAE + E V +R+ A Sbjct: 2434 GGLILAADYSQLELRILAHLSQDRRLIQVLNTGADVFRSIAAEWKMIEPESVGDDLRQQA 2493 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K I + I+YG+ L Q+ I ++AA YI + ++ GI+ ++ +T +++G+V+T Sbjct: 2494 KQICYGILYGMGAKSLGEQMGIKENDAACYIDSFKSKYTGINHFMRETVKNCKRDGFVQT 2553 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-------DH 914 I GRR + I + ER AIN +QGSAADI + A +++ K LE H Sbjct: 2554 ILGRRRYLPGIKDNNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLETFHSSFKSH 2613 Query: 915 KLATKML--------------------------LQIHDELVFEVPEEEITTASQIIVHSM 948 ML LQ+HDEL++EV EE++ +QI+ + M Sbjct: 2614 GHREGMLQSDRTGLLPKRKLQGMFSPIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEM 2673 Query: 949 EKACLPKINLRVPLKVNIKVSNNWQE 974 E A I L V LKV +K+ +W E Sbjct: 2674 ESA----IKLSVKLKVKVKIGASWGE 2695 >gi|281413898|ref|ZP_06245640.1| DNA polymerase I [Micrococcus luteus NCTC 2665] Length = 815 Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 101/299 (33%), Positives = 172/299 (57%), Gaps = 13/299 (4%) Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY--- 614 P+++ + + L+ P+ ++++ME+ GI +D D L + + + + +E+ + Sbjct: 515 PQVLDRGAQRLLQELEIPLSRLLARMELAGIAVDVDALTDLREDFTAAADAAKESAWASV 574 Query: 615 --DLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI-NCGDNPIIKNI 671 + G + NL SPKQL ++LF +L P KTKTG + T L+ + +P ++N+ Sbjct: 575 AEETGGMQVNLGSPKQLQEVLFERLNMPRTRKTKTG-YSTDVDSLQDLLEQTRHPFLENL 633 Query: 672 LEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQ 731 + R +K++ T L R+HT YS + TGRL+SL PNLQNIP++T+ G+ Sbjct: 634 MAHRDATKLRQTVEGLL--ETVAPDDRIHTTYSQTAAATGRLSSLHPNLQNIPVRTEAGR 691 Query: 732 KIRRAFISPPTKK----LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFG 787 +IR F++ L+SADYSQIE+RI+AH+++ L Q F D+H V +++FG Sbjct: 692 RIREVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFG 751 Query: 788 VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYI 846 V+ ++V+ + R K +++ + YG+S F L+ QL+I EA +K YF RF G+ E + Sbjct: 752 VDPDEVTAEQRAKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYFDRFGGVPEEL 810 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 107/289 (37%), Positives = 160/289 (55%), Gaps = 10/289 (3%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHD-GLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L ++DG S +RAFYA P + D G NA+ GF ML +++ R +H AV Sbjct: 11 QRLLVLDGHSMAFRAFYALPAENFATDTGQHTNAVYGFTAMLLTMIRQQRP----THVAV 66 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR+E Y +YKA R + P Q+ L +A GIP + ++G+EADDI+AT Sbjct: 67 AFDLSGPTFRSEEYAEYKAGRSETPAEFAGQIELTVKVMEALGIPTLTLEGYEADDIVAT 126 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSP-TTCLYDTVKEEKI---DIEHVIKKWGIPPEKM 179 + AE+ G+ ++S D+D QL+S TT LY I D + V+ K+G+ P + Sbjct: 127 LSARAEEAGWEAVVVSGDRDAFQLISERTTVLYPKKGVSDIPPMDADAVLAKYGVAPAQY 186 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 L AL G++ DN+PG+PG+G AA L++YG+L+ +L +A I KK E + E+ E Sbjct: 187 PELAALVGEAADNLPGVPGVGPGFAAKWLKQYGDLDGVLAHAHEITGKK-GEALREHLED 245 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 R +R+L L D+ + I LE + LE + AL+F ++ RV Sbjct: 246 VRRNRRLNALVRDLDLPIGLEAMRLEMPEREPVEELFDALQFNRIRERV 294 >gi|86563272|ref|NP_498250.3| POLQ (DNA polymerase theta) homolog family member (polq-1) [Caenorhabditis elegans] Length = 1661 Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 132/400 (33%), Positives = 212/400 (53%), Gaps = 38/400 (9%) Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK--FP--S 641 +GI DQ L +I K + +LEENI+ L+ KFN+ S ++ ++LF +L +P S Sbjct: 1287 SGIVFDQALCNSFIYKIRKQIENLEENIWRLAYGKFNIHSSNEVANVLFYRLGLIYPETS 1346 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 G K K T LEQ+N +PI+ ILE+RQ+ + L I R+H Sbjct: 1347 GCKPKLRHLPTNKLILEQMNT-QHPIVGKILEYRQIQHTLTQCLMPLAKFIG----RIHC 1401 Query: 702 FYSLASTMTGRLASLEPNLQNIP--IKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 ++ + T TGR+ + PNLQN+P I +D G R+ FI+ LI ADY Q+ELR+LA Sbjct: 1402 WFEMC-TSTGRILTSVPNLQNVPKRISSD-GMSARQLFIANSENLLIGADYKQLELRVLA 1459 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM---RRHAKTINFSIIYGISPFR 816 H++ + L + + D+ E++S Q R K + + +IYG+ Sbjct: 1460 HLSNDSNLVNLITSDRDL------------FEELSIQWNFPRDAVKQLCYGLIYGMGAKS 1507 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR--IHYDEINS 874 L+ R+ +A +K +F FPG+ YI +TK V + + TI GRR I I Sbjct: 1508 LSELTRMSIEDAEKMLKAFFAMFPGVRSYINETKEKVCKEEPISTIIGRRTIIKASGIGE 1567 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 ++ I ER A+N IQGSA++I + A++ + +++ +++L IHDE++ E PE Sbjct: 1568 ERARI----ERVAVNYTIQGSASEIFKTAIVDIESKIKE--FGAQIVLTIHDEVLVECPE 1621 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + AS+ I + M+ A L + LRVP++V++K +W + Sbjct: 1622 IHVAAASESIENCMQNA-LSHL-LRVPMRVSMKTGRSWAD 1659 >gi|116517384|gb|ABJ99064.1| Hypothetical protein W03A3.2 [Caenorhabditis elegans] Length = 1540 Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 132/400 (33%), Positives = 212/400 (53%), Gaps = 38/400 (9%) Query: 586 TGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK--FP--S 641 +GI DQ L +I K + +LEENI+ L+ KFN+ S ++ ++LF +L +P S Sbjct: 1166 SGIVFDQALCNSFIYKIRKQIENLEENIWRLAYGKFNIHSSNEVANVLFYRLGLIYPETS 1225 Query: 642 GAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHT 701 G K K T LEQ+N +PI+ ILE+RQ+ + L I R+H Sbjct: 1226 GCKPKLRHLPTNKLILEQMNT-QHPIVGKILEYRQIQHTLTQCLMPLAKFIG----RIHC 1280 Query: 702 FYSLASTMTGRLASLEPNLQNIP--IKTDLGQKIRRAFISPPTKKLISADYSQIELRILA 759 ++ + T TGR+ + PNLQN+P I +D G R+ FI+ LI ADY Q+ELR+LA Sbjct: 1281 WFEMC-TSTGRILTSVPNLQNVPKRISSD-GMSARQLFIANSENLLIGADYKQLELRVLA 1338 Query: 760 HIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQM---RRHAKTINFSIIYGISPFR 816 H++ + L + + D+ E++S Q R K + + +IYG+ Sbjct: 1339 HLSNDSNLVNLITSDRDL------------FEELSIQWNFPRDAVKQLCYGLIYGMGAKS 1386 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR--IHYDEINS 874 L+ R+ +A +K +F FPG+ YI +TK V + + TI GRR I I Sbjct: 1387 LSELTRMSIEDAEKMLKAFFAMFPGVRSYINETKEKVCKEEPISTIIGRRTIIKASGIGE 1446 Query: 875 PKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 ++ I ER A+N IQGSA++I + A++ + +++ +++L IHDE++ E PE Sbjct: 1447 ERARI----ERVAVNYTIQGSASEIFKTAIVDIESKIKE--FGAQIVLTIHDEVLVECPE 1500 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + AS+ I + M+ A L + LRVP++V++K +W + Sbjct: 1501 IHVAAASESIENCMQNA-LSHL-LRVPMRVSMKTGRSWAD 1538 >gi|118090791|ref|XP_420834.2| PREDICTED: similar to DNA polymerase N [Gallus gallus] Length = 530 Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 127/380 (33%), Positives = 202/380 (53%), Gaps = 37/380 (9%) Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 L V+ L ++ L+ P+I V++ ME I +D+ LK+ S + L LEE + ++GE Sbjct: 142 LQVQGLWKLFCTLELPLIKVLAVMETHKIHVDKQELKKTSEILGLRLKELEEEAHQIAGE 201 Query: 620 KFNLSSPKQLGDILFTKLKFPSGA----KTKTGQWKTTA-------QDLEQINCGDNPII 668 +F L+S QL ++LF KLK + +T+ Q +T+ QDL +P+ Sbjct: 202 RFLLTSSSQLREVLFEKLKLHTLCEKIPRTERQQVASTSEVVLSKLQDL-------HPLP 254 Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI---PI 725 K +LE+RQ+ K+KSTY D L + R + ++ T+TGRL+S PN+Q I P+ Sbjct: 255 KLMLEYRQVRKMKSTYVDGLRTCM--RKGFICPTWNQTGTVTGRLSSKHPNIQGISKHPV 312 Query: 726 KTDLGQKI------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 + Q I R F+S ++AD+SQIELRILA ++ L ++F+ Sbjct: 313 RITKKQYIKGKEEEILTISPRALFVSKKGYTFLAADFSQIELRILADLSAEPELLKLFQE 372 Query: 774 --SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 + DI +A++ G+ E+V R AK I +S++YG RLA L I EA + Sbjct: 373 PETTDIFTSLASQWKGIPSEQVKQTDREQAKRIVYSVVYGAGKERLAECLGITPHEAGHF 432 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I+ + ++ +HE+ +KT + GYV +I GR+ INS +R ER A+N Sbjct: 433 IESFMQKYKKVHEFTKKTIGQCQNKGYVVSIMGRKRLLANINSQDYKLRTQAERQAVNFV 492 Query: 892 IQGSAADITRRAMISVHKSL 911 +QGSAAD+ + AM+ + S+ Sbjct: 493 VQGSAADLCKMAMVEIFTSV 512 >gi|225850014|ref|YP_002730248.1| DNA polymerase I [Persephonella marina EX-H1] gi|225644888|gb|ACO03074.1| DNA polymerase I [Persephonella marina EX-H1] Length = 296 Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 115/282 (40%), Positives = 164/282 (58%), Gaps = 6/282 (2%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + L LVDGSS++YRAFYA P L+ G P AI GF M+ L+ KE + AV Sbjct: 2 DKKLVLVDGSSYLYRAFYALPPLTSPK-GEPTGAIYGFIRMISTLI----KELNPEYMAV 56 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD P TFR+E Y +YKA R + P+ L Q+P ++ + +GI +EI G+EADDIIAT Sbjct: 57 VFDLPGKTFRHEKYKEYKATRKETPDELKVQIPKIKEIIKLWGIKILEIPGYEADDIIAT 116 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 A +GF V I++ DKD+MQL+ + + V E + E V +K+GI PE+ V Sbjct: 117 IAKKAVDKGFEVIIVTPDKDMMQLIDEKVFILNPVTGEIFNREKVKEKYGIYPEQFVDYL 176 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 ++ GD++DNI G+ G+G KTA LL +YGNL+NIL + ++K K +E E E + + Sbjct: 177 SMIGDTVDNIIGVRGVGPKTAEKLLNQYGNLKNILEHKDQLKP-KLKEAFEEAEERLKEN 235 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 LV L ++ I I E L E + +L K L F L+ Sbjct: 236 IFLVSLEKNIDIDIQPEDLKKEKADLLKLRDIFKELGFKSLL 277 >gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC 23263] gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC 23263] Length = 656 Score = 187 bits (476), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 161/633 (25%), Positives = 281/633 (44%), Gaps = 50/633 (7%) Query: 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKV-- 424 +Y I + I+++ L + +F T + + +P A + SF V Sbjct: 3 NYRSITDMPSIRRY---LAGVSPVAFDFETAPDNEYRKEPKAALDAHKAHITGVSFSVTE 59 Query: 425 -ETIFIDLSVHTSQDSTGKNTLTKEILSYLKK-FFENEHFLKIGHNIKYDKLVLHRYGIS 482 + I++ L+ + + L ++LK+ FE+ + I HN+ ++ + L++ GI Sbjct: 60 GDAIYVPLAHRVGVNCEDPDAL----WAFLKESIFESHDVICIAHNLSFEAMFLYKQGIV 115 Query: 483 MR--GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIP----IDKISDS 536 ++ ++ I + S + K L+ + SS+ D+++ Sbjct: 116 VQEPCYDTIAAAQLTMKSKWEFRGLHDSGLKLLATSLFGADMPSFSSVTDGRHFDEMNPQ 175 Query: 537 QVQ--EHAIENSNVILQLWLLLRPKLIVEKLLHVY----ERLDKPMIDVVSQMEITGIQI 590 + + +A +S+ L L+ ++ L + E+L+ P +V M+ GI + Sbjct: 176 EYETVRYACADSDYTLCLYYKFNNWF--DRFLPAHRIITEQLESPTAVMVGCMKYNGIPV 233 Query: 591 DQDLLKQVSAEISKNLLSLEENIYDLSGEKFNL---SSPKQLGDILFTKLKFPSGAKTKT 647 D+ + + E + +L+ I +L+G N+ +S L+ L P KT+ Sbjct: 234 DRKAMLEKQTEAVAKVDALKAEINELTG-GVNIGANASTSAFKQYLYKDLGLPVLKKTEK 292 Query: 648 GQWKT---TAQDLEQINCGDNP----IIKNILEWRQLSKIKSTYADSLPNHINKRTQRVH 700 Q Q LE+ P + + + E+R+ K+KSTY D +H+N T R+H Sbjct: 293 NQEAADDAAMQLLEEYCAQHRPELVRLFQAVQEYRKWGKLKSTYIDGYLDHVNSATGRIH 352 Query: 701 TFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 T TGR A+ PN+QN P KT+ IR ++PP + ++S D+SQIELR+ A Sbjct: 353 PDLMPLGTDTGRWAARNPNMQNAPRKTNDPIGIRNFIVAPPGQIIMSLDFSQIELRVGAF 412 Query: 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIE----KVSPQMRRH---AKTINFSIIYGIS 813 + + + + + DIH + +FGV E K +P + H AK NF + YG+ Sbjct: 413 YCRDPKMLETYRSGGDIHAQTTSVVFGVPFEVAVDKNAPNYKEHRTIAKNCNFGVFYGLF 472 Query: 814 PFRLATQLRIPRS------EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRI 867 P L LR + I + G+ + E+TK + Y ET GRR Sbjct: 473 PRGLQKTLRFKAGLDTSFERCKEIIDNLKSGYSGLTTWQEETKARAAKTCYAETWMGRRR 532 Query: 868 HYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDE 927 + + S + ER A+N P+QG+AADI + A + + K +LQIHDE Sbjct: 533 YLPHMLSSDWGKHSFAERCALNTPVQGTAADILKAACARIVAGFPERPW-LKPILQIHDE 591 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 LVF +PEE + A Q + ME+ P ++ + Sbjct: 592 LVFLLPEERLLEAQQFVKKCMEQQPYPDFDVPI 624 >gi|254253593|ref|ZP_04946910.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia dolosa AUO158] gi|124898238|gb|EAY70081.1| DNA polymerase I - 3'-5' exonuclease and polymerase [Burkholderia dolosa AUO158] Length = 736 Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 104/256 (40%), Positives = 151/256 (58%), Gaps = 6/256 (2%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGSS++YRA++A P L R G P A+ G NML ++ RKE A + A +FD Sbjct: 15 LLLVDGSSYLYRAYHAMPDL-RGPGGEPTGALYGIINMLRRM----RKEVSAEYSACVFD 69 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 TFR+E+Y DYKANRP +P L Q+ + A +A G P + + G EADD+I T Sbjct: 70 AKGKTFRDELYADYKANRPSMPPDLALQVEPIHGAVRALGWPLLMVDGVEADDVIGTLAR 129 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 AE+ G V + + DKDL QLV+ L +T+ E +D + VI K+G+PPE+++ AL Sbjct: 130 EAERRGMNVIVSTGDKDLAQLVTEHVTLVNTMTNETLDRDGVIAKFGVPPERIIDYLALI 189 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD++DN+PG+ G KTA L +YG L+ ++ +A+ IK +N+ + L RKL Sbjct: 190 GDTVDNVPGVEKCGPKTAVKWLSQYGTLDGVIEHAAEIKGVV-GDNLRRALDFLPLGRKL 248 Query: 247 VMLRTDVPITIPLEHL 262 V + T + LE + Sbjct: 249 VTVDTACDLAPHLESI 264 Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 117/344 (34%), Positives = 183/344 (53%), Gaps = 17/344 (4%) Query: 368 YTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETI 427 Y I W+ KL+ +F T +D ++ + ++ S K Sbjct: 323 YDTIQTWAQFDAWLAKLDAAELTAFDTETTALDPMVARLVGLSFSVEPGK--------AA 374 Query: 428 FIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE 487 ++ ++ H D + L E+L+ LK + E+ K+G ++KYD VL YGI + G E Sbjct: 375 YLPVA-HRGPDMPEQLPL-DEVLARLKPWLESADRRKVGQHLKYDAQVLANYGIELNGIE 432 Query: 488 -DIMLMSYVLDSGRSSHDIASIAQKWLSYTR---KEILKSRKSSIPIDKISDSQVQEHAI 543 D +L SYVL+S R+ HD+ S+A + L +++ I D+++ +Q E+A Sbjct: 433 HDTLLESYVLESHRT-HDMDSLALRHLGIKTIKYEDVAGKGAKQIGFDEVALAQAAEYAA 491 Query: 544 ENSNVILQLWLLLRPKLIVEKLL-HVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 E++++ LQL L P++ E L VY ++ P+ V+ +ME TG+ ID LL S EI Sbjct: 492 EDADITLQLHRALYPQIAREPGLERVYREIEMPVSHVLRKMERTGVLIDDALLHAQSTEI 551 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINC 662 + L+ LE Y+L+G +FNL SPKQ+G I F KL+ P KT +G T + L+++ Sbjct: 552 ATRLIELEAQAYELAGGEFNLGSPKQIGQIFFEKLQLPVVKKTPSGAPSTDEEVLQKL-A 610 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 D P+ K +LE R LSK+KSTY D +P + T RVHT Y+ A Sbjct: 611 EDYPLPKLLLEHRGLSKLKSTYTDKMPRMVIPATGRVHTNYAQA 654 >gi|330684529|gb|EGG96240.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein [Staphylococcus epidermidis VCU121] Length = 387 Score = 187 bits (475), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 106/291 (36%), Positives = 159/291 (54%), Gaps = 13/291 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L L+DG+S +RAFYA PLLS K G+ NA+ GF +L K+L KE +HF V Sbjct: 2 NKLVLIDGNSLSFRAFYALPLLSNKA-GIHTNAVYGFAMLLEKIL----KEEQPNHFLVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+ Y +YK R K P L Q P +R A+ I E++ +EADDII T Sbjct: 57 FDAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELENYEADDIIGTL 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKW------GIPPEK 178 + A+K GF II+ D+DL QL + +Y T K+ D++H ++ G+ P + Sbjct: 117 SREADKAGFETIIITGDRDLTQLATDHVTIYYT-KKGVTDVDHYTPEFIAEKYNGLTPNQ 175 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ G+G KTA LL ++ +E + N + KK +E + + Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFNTVEGVYDNIESVSGKKLKEKLENSKD 235 Query: 239 TARLSRKLVMLRTDVPITIPLEHLIL-EDCNGPRLISFLKALEFTKLINRV 288 A +S+ L + + PI + LE + E + I K LEF +L+ + Sbjct: 236 DALMSKDLATINVESPIEVKLEDTKMDEHLDETEKIELFKKLEFNQLLAEI 286 >gi|307249709|ref|ZP_07531688.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858217|gb|EFM90294.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 180 Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 85/177 (48%), Positives = 123/177 (69%) Query: 723 IPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 IPI+ + G++IR+AFI+ K+++ADYSQIELRI+AH+A + F DIHR A Sbjct: 1 IPIRNEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATA 60 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AEIFG+ +++V+ + RR AK INF +IYG+S F L+ QL I R++A Y++RYF R+P + Sbjct: 61 AEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLGISRADAKKYMERYFQRYPAV 120 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 +++ + + GYVET+FGRR++ EI S + R ER AINAP+QG+AADI Sbjct: 121 QQFMTGIRESASEKGYVETLFGRRLYLPEIKSSNAMRRKAAERVAINAPMQGTAADI 177 >gi|316973920|gb|EFV57463.1| DNA polymerase I domain protein [Trichinella spiralis] Length = 1661 Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 139/455 (30%), Positives = 229/455 (50%), Gaps = 43/455 (9%) Query: 555 LLRPKL--IVEK--LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610 +L PK+ I++K L + + ++ P VV +E GI + DL +S + L LE Sbjct: 1205 VLYPKIFEILKKKNLWNAFLNIELPAQYVVGNIESAGIGFNVDLCMAMSTCLKNKLNELE 1264 Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG--------QWKTTAQDLEQINC 662 +G +F+L+SPK++ +LF +L+ P ++K Q+ T LE + Sbjct: 1265 AEAAKEAGHRFSLNSPKEVSKVLFYELQLPPPDESKVSRRRFTSVKQYSTAKHVLENL-A 1323 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSL----------PNHINKRTQRVHTFYSLASTMTGR 712 +P+ ILE+RQLS + Y L N + +R+ Y T TGR Sbjct: 1324 QLHPLPGIILEFRQLSAALTNYIYPLLRINRYLCTNCNCVFSTQERIIGKYDWY-TATGR 1382 Query: 713 LASLEPNLQNIPIKTDLGQ-----KIRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 L EPNLQ +P ++ IR F++ L+SAD+SQ+ELRILAH++ + L Sbjct: 1383 LIMHEPNLQIVPKFLEIPNGNNTLHIREIFVASEGCTLLSADFSQLELRILAHLSNDSKL 1442 Query: 768 YQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 ++ + +D+ +AA++ ++ V+ R AK I +++IYG+ P LA +L + Sbjct: 1443 IKILKEKIDVFTEIAAKMNSIDRSAVNEIQRNRAKQICYALIYGMCPKSLAAELGTDEEQ 1502 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A + + FP + ++ +T R G+ T+ R ++ I S +S + ER A Sbjct: 1503 AIQFYNNFKKLFPDVTRWLIETTEKCRSRGFCVTLANRVRYFAAIRSSATSDKLHAERQA 1562 Query: 888 INAPIQGSAADITRRAMISVHKSLEDH----------KLATKMLLQIHDELVFEVPEEEI 937 IN +QGSA+DI + A+ V+ +L+D+ + K++ QIHDEL+ EV + Sbjct: 1563 INTTVQGSASDIFKIALRKVYLALDDYTKKNGQMNNAQTLAKIIFQIHDELMLEVTNSNV 1622 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + I+ HSME A ++LRV L V IK N+W Sbjct: 1623 EAVATIVKHSMETA----VSLRVDLPVRIKHGNSW 1653 >gi|159486913|ref|XP_001701481.1| DNA polymerase theta [Chlamydomonas reinhardtii] gi|158271663|gb|EDO97478.1| DNA polymerase theta [Chlamydomonas reinhardtii] Length = 2508 Score = 186 bits (472), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 141/538 (26%), Positives = 240/538 (44%), Gaps = 111/538 (20%) Query: 539 QEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 Q A + ++ ++++ P+L E LL L+ P++ ++++ME GI + +LK Sbjct: 1966 QADACRRAAMVRRIYIDKLPRLQSEGLLRPLLELEMPLVRILARMEGEGIALAPQVLKDQ 2025 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK-----TT 653 + L L + +G F+L+SPK + ++LF L P + Q + Sbjct: 2026 RGPLEARLRQLAAKAHLAAGMTFDLNSPKDVSEVLFQHLNLPPPPCAFSNQNQRHPSTKK 2085 Query: 654 AQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR--------------- 698 E +PII+ +L++R L K+ + + ++L + + QR Sbjct: 2086 EVLEELEESTHHPIIRLLLDYRTLHKLLTGFVETLYHTAKGQWQRQQHELERCQGQGQQP 2145 Query: 699 -----------------------------VHTFYSLASTMTGRLASLEPNLQNIP----- 724 +HT ST TGRLA EPNLQ +P Sbjct: 2146 QRGGAATGGAVKPGGPGPVPDVIRLCGTWLHT-----STATGRLAMDEPNLQTVPRPVEY 2200 Query: 725 --IKTDLGQK---------------------------------------IRRAFISPPTK 743 + + L Q +R AF++PP Sbjct: 2201 TFMASQLSQASAGTPPAAGADGAELKLLPGEERGGGAGEGGRSVTLHFNLRSAFVAPPGY 2260 Query: 744 KLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAK 802 +++ADY QIELR++AH + L + N + D ++AAE V +E+V+P++R AK Sbjct: 2261 MVLAADYKQIELRLMAHFSSDAALCALLRNPAQDPFILLAAEWKKVPVEQVTPEVRVQAK 2320 Query: 803 TINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 + + ++YG+ LA +L + +EA + + P + ++ + VR GY T+ Sbjct: 2321 RLAYGMLYGMGTNTLAQELGVSVAEAGELSDNFRRAIPSVDRWMREVVEAVRSCGYTTTL 2380 Query: 863 FGRRIHYDEINSPKS----SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA- 917 GRR +Y IN S S R ER A+N QGSAAD+ + AM+++ + LE LA Sbjct: 2381 MGRRRYYSRINERASKDARSARAQAERQAVNTVCQGSAADLIKAAMVTLQRRLEAEGLAP 2440 Query: 918 -TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +M+L +HDELVFEV E+ + A++++ +E ++ L VPL V + +W + Sbjct: 2441 HVRMVLMVHDELVFEVAEQLLPAAARLVQAVLEG----EVALSVPLPVKLSAGPSWGQ 2494 >gi|198430821|ref|XP_002124758.1| PREDICTED: similar to DNA polymerase theta [Ciona intestinalis] Length = 1711 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 146/524 (27%), Positives = 249/524 (47%), Gaps = 55/524 (10%) Query: 486 FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIEN 545 ++D M+ S+++D + S+ + + S + + K +++ S + V + Sbjct: 1201 WQDPMIASWLMDPDNIKQGLFSLVEHYCS-EHLYLFQDTKYDWDVNRPSYTSVSSEKVCC 1259 Query: 546 SNVILQ--LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 I L L L +L + + ++ P + V+ +E+ GI++D LLK+ E+ Sbjct: 1260 VESIASYILMLQLEEQLSGMNMWQHFTGVEMPHMYCVALLELNGIEVDNSLLKRYRLELH 1319 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCG 663 L+L+E + + G KFNLS+PK++ +LF +L+ C Sbjct: 1320 SASLALQEKAWKILGRKFNLSNPKEVSKVLFQELRLXXXXXXXX---XXXXXXXXXYPC- 1375 Query: 664 DNPIIKNILEWRQLSKIKSTYADS----LPNHINKRTQRVHTFYSLASTMTGRLASLEPN 719 I+ WR ++ YA + L N + R+H L T TGR+ EPN Sbjct: 1376 -------IMSWRTVN-----YALNKVILLINSLPPSCGRLH-HKCLTLTNTGRMIMSEPN 1422 Query: 720 LQNIPIKTDL--GQK----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPL 767 +Q+IP + + G K +R F++ K LISADYSQIELRILAH++ L Sbjct: 1423 IQSIPKQFSITKGSKSEADSEQSFCLRNIFVAGNGKLLISADYSQIELRILAHLSGDETL 1482 Query: 768 YQVFENS-LDIHRMVAAEIFG--VNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIP 824 F +S +DI + +AA + +I+ V+ + R K + I+YG+ LA Q+ Sbjct: 1483 IAAFNSSGVDIFKSIAAMFYSEISSIDDVTDKQRDTTKQTCYGILYGMGAQTLAQQMNTS 1542 Query: 825 RSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINE 884 ++A + + + + +P + Y + ++ GY+ETI GRR + EI S + +R+ E Sbjct: 1543 ETDAQNAMDSFMNSYPMVKVYFNRLVAQCKEKGYIETISGRRRYLPEIKSVRLKMRSHAE 1602 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATK------------MLLQIHDELVFEV 932 R A+N+ IQGSAADI + A +H ++ T ++ IHDEL++EV Sbjct: 1603 RQAVNSTIQGSAADIVKMATYKIHCAVASLGWNTLHQNTRSNTTDFFLVHHIHDELIYEV 1662 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 E+++ A +I E+ + + V L V IKV W + N Sbjct: 1663 DEKKLHEAVSVI----ERCMVDAFPMSVKLAVRIKVGKLWGDLN 1702 >gi|227520123|ref|ZP_03950172.1| possible DNA polymerase I [Enterococcus faecalis TX0104] gi|227072467|gb|EEI10430.1| possible DNA polymerase I [Enterococcus faecalis TX0104] Length = 428 Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 104/293 (35%), Positives = 165/293 (56%), Gaps = 12/293 (4%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L LVDG+S +RAF+A L R +GL NAI F NM ++Q + + +H V Sbjct: 6 LLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQ----KEMPTHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E Y +YKA R K P Q+P +R + G+ E+ +EADDII T Sbjct: 62 AFDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEK 178 +K+ + V ++S D+DL QL + T + TVK E EH+ +K+ G+ P++ Sbjct: 122 LANKVDKDEYDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPKQ 181 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 ++ ++ L GD+ DNIPG+ IG KTA LL++YG++E + N +K+ K +EN++ E Sbjct: 182 IIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDKE 241 Query: 239 TARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATT 291 A LS++L + + P+ + +E L E N +L+ F K ++F + + ++ T Sbjct: 242 QAFLSKRLATIEVNAPVEVNVEDLAYEGKNLEKLVPFYKEMDFKQFLAKLDIT 294 >gi|219520265|gb|AAI45379.1| Poln protein [Mus musculus] Length = 848 Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 140/476 (29%), Positives = 240/476 (50%), Gaps = 49/476 (10%) Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 K S + S + + ++ N ++ L + L KL L ++ L+ P+I +++ ME Sbjct: 381 KPSSTFREASRNTLSQNVCMNLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVME 440 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 I +D++ +++ SA + L LE+ + ++GE+F + S QL +ILF KLK ++ Sbjct: 441 NHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQ 500 Query: 645 TK----TG---QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 K TG Q T+ L + +P+ K ILE+RQ S I ST+ + Sbjct: 501 RKHLPRTGLQNQLSTSEAMLNSLQ-DLHPLPKLILEYRQGS-ISSTWNQT---------- 548 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPT 742 T+TGRL++ PN+Q I PIK R F+S Sbjct: 549 ---------GTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEG 599 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRH 800 ++AD+SQIELRILAH++ L ++F+ S D+ + ++ + IE+V+ R Sbjct: 600 HTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQ 659 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 K + +S++YG RLA L + EA +++R+ ++ I ++ + GYV Sbjct: 660 TKKVVYSVVYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIGQCHSAGYVT 719 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATK 919 +I GRR I + +R ER A+N +QGSAAD+ + AMI + ++ L + Sbjct: 720 SILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTAR 779 Query: 920 MLLQIHDELVFEVPEEEITTASQI---IVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ QIHDEL+FEV + ++ + + I+ S+++ ++ L+VPLKVN+ V +W Sbjct: 780 LVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 835 >gi|183231230|ref|XP_653960.2| DNA-directed DNA polymerase [Entamoeba histolytica HM-1:IMSS] gi|169802582|gb|EAL48574.2| DNA-directed DNA polymerase, putative [Entamoeba histolytica HM-1:IMSS] Length = 657 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 125/393 (31%), Positives = 201/393 (51%), Gaps = 21/393 (5%) Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTG 648 +ID LL + ++ + +E + G NLSSP+Q+ L ++F G G Sbjct: 268 KIDNKLLNEQRKKLIEEQHKIEMETKKIIGRTINLSSPEQVKKEL---IRFNIGI---DG 321 Query: 649 QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQR--VHTFYSLA 706 K D + ++ D+P K +LE+R++SK+ S + + K + T +S Sbjct: 322 IKKKATTDKKILSQSDHPFAKLVLEYRKISKLLSGVIEQIRKCCIKSGDEYFIRTTWSQT 381 Query: 707 STMTGRLASLEPNLQNIPIKT-DLGQKI---RRAFISPPTKKLISADYSQIELRILAHIA 762 + +TGR+ S PNLQ IP ++ L Q + R FI+ ++ DY+QIELRILA Sbjct: 382 AIVTGRIQSKSPNLQQIPKQSFSLPQCLIIPRDLFITHNNNTFVAIDYNQIELRILADFT 441 Query: 763 KITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR 822 K L + F+++ D+HR++AA N+ ++ RR AKTI + IYGI PF LA QL Sbjct: 442 KDHHLIEFFKSNTDVHRLIAAHWLKKNVNDITDDERRKAKTIVYGCIYGIGPFSLADQLH 501 Query: 823 IPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET---IFGRRIHYDEINSPKSSI 879 + E+ +++ + +FP ++ E+T G+V T R + + N K+ Sbjct: 502 VSLDESKAFLESFLDQFPAFKKWKEETITNASTTGFVHTINNRRRRINNLTDCNDKKTVA 561 Query: 880 RNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITT 939 ++R A+N+PIQG+AADI + MI + K L + ++LL IHDE+V EVP+ + Sbjct: 562 E--SKRIAVNSPIQGTAADIIKMCMIEIFKKLHSSWVGVQLLLNIHDEIVLEVPDHLLDE 619 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + H ME + L VPL V ++ W Sbjct: 620 VCVTLKHLMEHI----VKLEVPLVVTVETGKKW 648 >gi|281205135|gb|EFA79328.1| mitochondrial DNA polymerase A [Polysphondylium pallidum PN500] Length = 1411 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 104/285 (36%), Positives = 166/285 (58%), Gaps = 9/285 (3%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M + H ++DG+ +Y+AF +PLLS DG P+NAI G+ + + L++ + + + Sbjct: 282 MVSKKHTLIIDGTPLLYKAFNGSPLLSV--DGQPINAIHGYTQSILRFLKDFKPD----Y 335 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 A+ FD +FR E+YP YK++RP +P+ L Q L+ + A GIP ++I +E+DD+ Sbjct: 336 VALCFDPRGGSFRRELYPAYKSHRPPMPDDLQSQFALIDHLSDAIGIPVLKIDRYESDDL 395 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS-PTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 IATYT IA + G +TI+S DKDL+QLV+ +Y E I V ++ G+ E + Sbjct: 396 IATYTRIANEAGHRITIVSDDKDLLQLVTNENISVYRPKSNEIIGESDVSERIGVDSEFV 455 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 Q+L GD+ DNIPG+PG+G KTA ++ +G+L++IL N + K +E I + Sbjct: 456 TTFQSLVGDTSDNIPGVPGLGPKTAISIINSFGHLKDILENVENLPT-KLQEKIQNLKDQ 514 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKL 284 LS +LV L +V + PL+ L N +LI +L +F ++ Sbjct: 515 IHLSYQLVTLNKNVNVP-PLDSLKFNPINKTKLIEYLDRFKFQRI 558 Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 161/662 (24%), Positives = 271/662 (40%), Gaps = 145/662 (21%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIA 506 EIL + +FE+E K+ HN +D+ + + + I ++GF D + M+ + D+ R+ Sbjct: 758 EILEVFRPYFESESIYKVWHNYGFDRHIFYNHNIDVKGFGGDTLHMARLWDAARNGRGGY 817 Query: 507 SIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI-------------LQLW 553 S L KE+L + K+SI D ++++ + ++I L+ W Sbjct: 818 S-----LEGLSKELLDNHKTSIK-DLFGKNKIKADGLPGKDIIVPPLEVIQRHPKHLETW 871 Query: 554 LL-----------LRPKLIVE----------KLLHVYERLDKPMIDVVSQMEITGIQIDQ 592 + LR L + + Y L +P +++ ME G+++D Sbjct: 872 IEYSSLDAELTWNLRENLQAKLQNMVWMNDTNMWDFYHNLWRPFGHLLTDMERRGMKVDI 931 Query: 593 DLLKQVSAEISKNL---------------------------------------------L 607 + LK V +K++ + Sbjct: 932 EHLKTVEGVATKDIQDNMDAFQQWAVKYCPNAKYMNPSSDAQIQQLLFAPTKNVKTKEEM 991 Query: 608 SLEENIYDLSGEKF---NLSSPKQLGDILFTKLKFPSGAKTKTG---------------- 648 LE + E F PK++ L + L P G+ T +G Sbjct: 992 PLEREFETENTEGFIEEGKKKPKKMRPFLLSGLGLPFGSHTASGWPAVDSASLRDLAGNP 1051 Query: 649 ----------QWKTTAQDLE---QINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKR 695 +K ++D E Q + I ++LE + + S++ L + Sbjct: 1052 SKGKYGKIFNHFKDKSEDKEKGEQEGIEASKAITSLLEIGSVGTLLSSFIIPL-QKLCDS 1110 Query: 696 TQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIEL 755 RVHT ++ +T TGRL+S PNLQN P KIR+AF P L+ ADY Q+EL Sbjct: 1111 NHRVHTSVNV-NTETGRLSSKRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVADYGQLEL 1169 Query: 756 RILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS----------------PQM-- 797 R+LAHI + F+ D H A ++ E V P + Sbjct: 1170 RLLAHITNCRSMINAFKIGGDFHSRTAMGMYPHVKEAVDRGDVLLEWDGDGEPPKPLLKD 1229 Query: 798 -----RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852 RR AKT+NFSI YG + L+ + EA + + R++ P + + KT Sbjct: 1230 SFGAERRKAKTLNFSIAYGKTAHGLSKDWGVTLKEAQETLDRWYSDRPEVLLWQRKTIQI 1289 Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912 + + T+ GR +I++P ++ +ERA+IN P+QG AADI +AM+ + + Sbjct: 1290 ANTHKWTRTLMGRYRMLPDIDNPAKGMKGHSERASINTPLQGGAADIVMKAMLMIEEDKR 1349 Query: 913 DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +L ++++QIHDEL+ E PE+ A +I++ M L V L V+ + + W Sbjct: 1350 LKELGFQLIMQIHDELILEGPEQHAKEAREIVMRLMSNPL--NTPLLVELVVDCRFAKTW 1407 Query: 973 QE 974 E Sbjct: 1408 YE 1409 >gi|66828405|ref|XP_647557.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4] gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A [Dictyostelium discoideum] gi|60475250|gb|EAL73185.1| mitochondrial DNA polymerase A [Dictyostelium discoideum AX4] Length = 1369 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 174/681 (25%), Positives = 319/681 (46%), Gaps = 119/681 (17%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 +++ H L+DG+ Y+A TP L+ ++G+ VN + GF + K++ + Sbjct: 269 KRKKHTVLIDGTLMAYKANATTPSLT--NEGMNVNVLYGFMRSMLKVIDELKP---IDSI 323 Query: 62 AVIFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD +FR ++YP+YK+NRP P LL QL L+ T + + ++ G+E DD+ Sbjct: 324 VVCFDPKGGSSFRRDLYPEYKSNRPPTPPELLQQLLLIPEVTDSINVAFTKVDGYECDDL 383 Query: 121 IATYTYIAEKEG----------------------FAVTIISTDKDLMQLVSPTTCLYDTV 158 +ATY+ +A +EG VTI++ DKD+ QLV+ +Y T Sbjct: 384 LATYSKLATQEGNKFIEGNDQYDPTHPESNRFNGSQVTIVTDDKDIYQLVNDNVSVYSTR 443 Query: 159 KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218 + +D + VI K+G P K V Q+L GD +DNIPGIP IG KTA +++++GNL +I+ Sbjct: 444 RGSMVDKQGVIDKFGFEPNKFVTFQSLIGDKVDNIPGIPRIGEKTATDIIKKFGNLNSII 503 Query: 219 INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278 N ++ Q K E I + R+S +L L +V I + L+ + + + + +FL Sbjct: 504 ENIDQLPQ-KFIEPIRSSIDQLRISYQLAKLNDNVSINLNLDDIKYKPIDRTKFYNFLDK 562 Query: 279 LEFTKLINRVATTYDCDAANIEPVVLDINTTENKGIAIETEIDRDTTIKTS----QFSSL 334 FT + + V L+ ++N+ I T TIK + +F+ + Sbjct: 563 YNFTSIKSSVEK-------------LNKLFSDNQEITTSTSTTNLETIKKNYSKVEFNYI 609 Query: 335 SDQTSKINSEQTPQKLFLERLQKLSQYPINNDSYTKIVNTKDIQQ-------WVQKLETI 387 D+ K + ++S IN + +D++ +++ + Sbjct: 610 DDENIKFD--------------EISNEEINQLKPKNVTMVRDVETARMVVSILMKQKDRF 655 Query: 388 GSASFKIITDTMDAF----HSKPIAIAISTLDQ---KDDTSFKVETIFIDLSVHTSQDST 440 + ++I + F H K I +I Q D S +++D+ D Sbjct: 656 HACDTEVIDIDLKKFSPIGHGKMICFSIYCGPQVKFHDGNS----RVWVDVMDDIEGD-- 709 Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSG 499 EIL K++FE+E LK+ HN +D+ + + +GI+++GF D + M+ + ++ Sbjct: 710 -------EILQVFKEYFEDESILKVWHNYAFDRHIFYNHGINVKGFGGDTLHMARLWNAS 762 Query: 500 R---SSHDIASIAQKWLSYTR---KEILKSRK--------SSI---PIDKIS-DSQVQEH 541 R + + +++++ L+ + K++ +RK SI P+++I DS+ + Sbjct: 763 RMNSGGYSLEALSKELLNKPKVPIKDLFGTRKIKADGEEGKSIVIPPLERIQRDSKFILN 822 Query: 542 AIENSNVILQLWLLLRPKLIVE----------KLLHVYERLDKPMIDVVSQMEITGIQID 591 IE S++ +L LLR + ++ + Y + +P ++++ME G+++D Sbjct: 823 WIEYSSLDSELTWLLRENIHIKLRDMEWNQGTTMWDFYYLMWRPFGHLLTEMEQRGLKVD 882 Query: 592 QDLLKQVSAEISKNLLSLEEN 612 D LK + K +EEN Sbjct: 883 IDYLKSLE---EKAYTDMEEN 900 Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 96/298 (32%), Positives = 147/298 (49%), Gaps = 27/298 (9%) Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 R+HT ++ +T TGRL+S +PNLQN P KIR+AF P LI ADY Q+ELR+ Sbjct: 1072 RLHTSINV-NTETGRLSSKKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADYGQLELRL 1130 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIF-----------------GVN------IEKVS 794 LAHI + F+ D H A ++ G ++ V Sbjct: 1131 LAHITNCKSMITAFQVGGDFHSRTAMGMYPHVKEAIDRGEVLLEWDGEGEPPKPLLKNVY 1190 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 RR AKT+NFSI YG + L+ + +EA + + R++ P + + KT Sbjct: 1191 ASERRKAKTLNFSIAYGKTAHGLSQDWGVTLNEAKETLNRWYEDRPEVLVWQRKTIETAH 1250 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH 914 + G+ T+ GR +I K ++ ERA+IN P+QG AADI +AM+ + + Sbjct: 1251 KYGWTRTLMGRYRQLPDIKGNKG-MKGHAERASINTPLQGGAADIVMKAMLIIEDNKRLK 1309 Query: 915 KLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +L K+++QIHDEL+ E PE+ A I+++ M L + L V+ + + W Sbjct: 1310 ELGFKLIMQIHDELILEGPEQHADEARSIMMNLMSNPLTTP--LLIDLVVDCRYAKTW 1365 >gi|56807538|ref|ZP_00365463.1| COG0258: 5'-3' exonuclease (including N-terminal domain of PolI) [Streptococcus pyogenes M49 591] Length = 410 Score = 185 bits (469), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 166/303 (54%), Gaps = 22/303 (7%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLS-----RKHDGLPVNAIAGFCNMLWKLLQNSRKE 55 M+ +N L L+DGSS +RAF+A L + + H GL NAI GF ML +++ + Sbjct: 1 MENKNKLLLIDGSSVAFRAFFA--LYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQ-- 56 Query: 56 SIASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGF 115 +H V FD TFR E+Y DYKA R K P+ Q P +R A GI E++ + Sbjct: 57 --PTHVLVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHY 114 Query: 116 EADDIIATYTYIAEKEG--FAVTIISTDKDLMQLVSPTTC---LYDTVKEEKIDIEHVIK 170 EADDII T +AE+ F VTI+S DKDL+QL T L + E+ ++++ Sbjct: 115 EADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEILKKGCRIEEFTPAYLME 174 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K G+ P + + L+AL GD DNIPG+ IG KT LL E+G+LE I + K K + Sbjct: 175 KMGLTPNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKMK 234 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLIS---FLKALEFTKLINR 287 EN++ + A LS+ L + T PITI L+ ++ NGP + S F ++F +L Sbjct: 235 ENLINDRDQAFLSKTLATINTASPITIGLDDIV---YNGPDVASLSQFYDEMDFVQLKKG 291 Query: 288 VAT 290 +A+ Sbjct: 292 LAS 294 >gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1] gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1] Length = 925 Score = 184 bits (468), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 115/351 (32%), Positives = 194/351 (55%), Gaps = 25/351 (7%) Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 G+K N S KQLG++LF ++ + T G +T D + + +K ++E+R+ Sbjct: 498 GGDKINFGSTKQLGELLFERMGLETVIFTDKGA-PSTNDDSLKFMGSQSDFVKVLMEFRK 556 Query: 677 LSKIKSTYADSL-----PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD--- 728 + + + + L P++I VH Y++ T+TGRL+S EPN Q P K + Sbjct: 557 ANHLYNNFVSKLSLMIDPDNI------VHPSYNIHGTVTGRLSSNEPNAQQFPRKVNTPT 610 Query: 729 LGQ---KIRRAFIS--PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 L Q +I++ F S ++ DYSQ+ELRILA I + L ++ + D+H+ VA+ Sbjct: 611 LFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELRILAVITQDPTLIDLYRSGADLHKAVAS 670 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHR 838 + FGV IE+VS R +K I F I+Y S L+ LR + E +IK+YF R Sbjct: 671 DAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGITMSEDECEIFIKKYFKR 730 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 FP + ++I TK V+++ YV+T+ GR + +I+S S N ER A+N PIQG+ +D Sbjct: 731 FPKVSKWIRDTKKHVKRHKYVKTLTGRTRNLPDIDSIDQSKANEAERQAVNTPIQGTGSD 790 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 T ++I +++ L + L +++ + +HD +V + P++E+ ++ + H ME Sbjct: 791 CTLMSLILINQWLRESGLRSRICITVHDSIVLDCPKDEVLEVAKKVKHIME 841 >gi|163782128|ref|ZP_02177127.1| DNA polymerase I 3'-5' exo domain [Hydrogenivirga sp. 128-5-R1-1] gi|159882660|gb|EDP76165.1| DNA polymerase I 3'-5' exo domain [Hydrogenivirga sp. 128-5-R1-1] Length = 291 Score = 184 bits (467), Expect = 7e-44, Method: Composition-based stats. Identities = 104/289 (35%), Positives = 167/289 (57%), Gaps = 15/289 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 ++L+D SSFIYR F+A P L+ K DG P AI GF L ++++ R E + V+FD Sbjct: 6 IYLIDASSFIYRGFFALPPLTTK-DGFPTGAIYGFLRALLSIMKSERPE----YLVVVFD 60 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +PA T R+ ++ +YKA RP +P+ L Q+P+++ GIP +E++G+EADD+IA Sbjct: 61 HPAPTKRDSLFKEYKAGRPSMPDPLRLQIPVIKELLWLMGIPTLEVEGYEADDLIAILAK 120 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 ++GF V I + DKD++QLVS + + + E + + V K+G+PP+K+ AL Sbjct: 121 RFSEKGFKVKIYTPDKDMLQLVSENVVVINPMNWEVFNPDKVKDKFGVPPQKVADYLALV 180 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ---KKRRENILEYAETARLS 243 GD IDN+PG+ G+G KTA L++++G + NIL K+ + +RE + LS Sbjct: 181 GDKIDNVPGVRGVGPKTAVKLIEKFGGVPNILERWEEFKKIYPEAKREEL-------ELS 233 Query: 244 RKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTY 292 +LV TD +++ E L + + RL L+ LE ++ V + Sbjct: 234 YQLVKPMTDAEVSLSDEDFKLREPDINRLRKRLEELEMKSILKDVEKLF 282 >gi|308522710|ref|NP_001184156.1| polymerase (DNA directed), theta [Xenopus (Silurana) tropicalis] Length = 2671 Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 158/620 (25%), Positives = 273/620 (44%), Gaps = 121/620 (19%) Query: 469 IKYD-----KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILK 522 I YD K +L +S+ G F+D + ++LD G + ++ +L Y + Sbjct: 2049 IMYDCIEQYKALLLACRVSLAGHFQDPKVACWLLDPGSKERTLHNMVTNFLPYELPLLDG 2108 Query: 523 SRKS----SIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 S+ + SD + A + V+ L L EKL + R++ P Sbjct: 2109 VGPGQGVQSLGLSPSSDQTGRYRAAIEAVVVFSTMNALGALLEKEKLQDAFHRVEMPTQY 2168 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLK 638 ++ +E+ G+ + + + L +E Y L+G F+L+S L +LF +LK Sbjct: 2169 CLALLELNGMGFSTEECETQKHIMEAKLNEIEAVAYQLAGRSFSLTSHDDLAQVLFLELK 2228 Query: 639 FP----------------------SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 P SGA+ + G+ +TA+D+ + +P+ ILEW++ Sbjct: 2229 LPPNGDPKAQGNKKTLGYTRRAAASGARVRLGKQFSTAKDVLEKLKALHPLPGLILEWKR 2288 Query: 677 LSKIKSTYADSLPN----HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDL--- 729 ++ + L + N +R++ S T TGR++ EPN+QN+P ++ Sbjct: 2289 ITNALTKVVFPLQREKLLNPNLGMERIYPI-SQTHTATGRVSFTEPNIQNVPKDFEIEMP 2347 Query: 730 ----------------------GQK--------------------------IRRAFISPP 741 G+K +R AF+ P Sbjct: 2348 RLVGESPPSQAPGPSAYPYRNRGKKPQVNTPGPKVPVEQIPAERGVSFFVSMRHAFVPFP 2407 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 +++A YSQ+ELRILAH+++ L QV + D+ + +AAE ++ E V+ +R+ A Sbjct: 2408 GGLILAAAYSQLELRILAHLSRDRRLIQVLNSGSDVFKSIAAEWKMIDPEAVTDTVRQQA 2467 Query: 802 KTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVET 861 K I + IIYG+ L Q+ I S+AA YI + R+ GI +++++T ++G+V+T Sbjct: 2468 KQICYGIIYGMGAKSLGEQMGIEESDAACYIDTFKSRYTGIQKFLKETVRSCTRDGFVQT 2527 Query: 862 IFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE--------- 912 I GRR + I ++ ER A+N +QGSAADI + A +++ K LE Sbjct: 2528 ILGRRRYLPAIKDSNPYAKSHAERQAVNTTVQGSAADIVKTATVNIQKRLEETFPSVPKS 2587 Query: 913 -DHKLATK-------------------MLLQIHDELVFEVPEEEITTASQIIVHSMEKAC 952 +H + +LQ+HDEL++E +E+ +QII ME A Sbjct: 2588 HEHPVQAGGTGRAERLRHRPPPTRGAFFILQLHDELLYEAAQEDAIQVAQIIKKEMENA- 2646 Query: 953 LPKINLRVPLKVNIKVSNNW 972 + L V L+V +K+ +W Sbjct: 2647 ---MKLSVKLRVKVKMGPSW 2663 >gi|293571803|ref|ZP_06682819.1| DNA polymerase I [Enterococcus faecium E980] gi|291608057|gb|EFF37363.1| DNA polymerase I [Enterococcus faecium E980] Length = 562 Score = 184 bits (466), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 106/292 (36%), Positives = 161/292 (55%), Gaps = 12/292 (4%) Query: 5 NHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 N L LVDG+S +RAF+A L R +GL NAI F M ++Q + +H Sbjct: 4 NKLLLVDGNSVAFRAFFALHNSLERFKNRNGLHTNAIYAFNTMFENVMQKEQ----PTHV 59 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V FD TFR E+Y +YK R K P Q+P +R G+ E+ +EADDII Sbjct: 60 LVAFDAGKTTFRTEMYAEYKGGRSKTPGEFKEQMPYIRDLLTGLGVQYYELPNYEADDII 119 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPP 176 T +K F V ++S D+DL QL S + TVK E EHV +K+ G+ P Sbjct: 120 GTLAEKVDKNQFDVVVLSGDRDLTQLASKEVKVDITVKGVSDIESYTPEHVAEKYDGLIP 179 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 ++++ ++ L GD+ DNIPG+ IG KTA LL++YG++E I + +KQ K +EN++ Sbjct: 180 KQIIDMKGLAGDASDNIPGVTKIGEKTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLIND 239 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E A LS+KL + T P+ + ++ L E N +L+ F K ++F + ++++ Sbjct: 240 KEQAFLSKKLATINTSAPVEVSIDSLKYEGKNLDKLVPFYKEMDFNQFLSKL 291 Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 122/253 (48%), Gaps = 31/253 (12%) Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYL----KKF--------FENEHF------- 462 FK E D++++ + G N T+EI+ KK FEN+ F Sbjct: 311 FKEEMFTTDMALYV--EMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENQAFHSWITDP 368 Query: 463 --LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQKW----LSY 515 LK ++ K + L+RY +G + D++L +Y+LD+ S DI IA + + Sbjct: 369 NRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQS 428 Query: 516 TRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP 575 K K +P + + H I L L +L + ++ +++ P Sbjct: 429 DETVYGKGAKKGLPEE---EELFFAHLARKVAAINALTPKLSQELADKNQEDLFRKMELP 485 Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFT 635 + ++++MEI+GI++D L+++ E S L +E+ IY+ +GE+FNL+SPKQLG ILF Sbjct: 486 LSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFE 545 Query: 636 KLKFPSGAKTKTG 648 K+ P K K G Sbjct: 546 KMGLPVIKKQKLG 558 >gi|309810235|ref|ZP_07704080.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D] gi|308169507|gb|EFO71555.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 2503V10-D] Length = 214 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 96/218 (44%), Positives = 136/218 (62%), Gaps = 7/218 (3%) Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGV-NIEKVSPQMRRHAKTINFSIIYGISPFR 816 + H KI + + F+ DIH A +IFG+ N+++V+P MRRHAK +NF I+YGIS + Sbjct: 1 MYHTKKI--MLEAFKEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYG 58 Query: 817 LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 LA L I R EA ++I YF ++P I +Y++ R+ GY ETI RR +I++ Sbjct: 59 LAKNLGISRQEAQNFINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKN 118 Query: 877 SSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEE 936 +IR+ ER AIN+PIQGSAADI + AMI + LE KL TKM+LQIHDEL+F+VP EE Sbjct: 119 FNIRSFAERTAINSPIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEE 178 Query: 937 ITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + +++ M++A L VPL + +NW E Sbjct: 179 LDLIKTLVLKIMQQAA----QLDVPLIADANWGHNWYE 212 >gi|330801495|ref|XP_003288762.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum] gi|325081196|gb|EGC34721.1| hypothetical protein DICPUDRAFT_34531 [Dictyostelium purpureum] Length = 489 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 140/471 (29%), Positives = 234/471 (49%), Gaps = 67/471 (14%) Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL-SGEKFN 622 K +++ ++ ++ + + ME GI ++ + + I + + L+ + L G+ F+ Sbjct: 16 KFFNIFLNIEMKILPIFAMMEYVGIGFNEKVSESGKHLIQRKIEYLDYKAHVLLPGKTFS 75 Query: 623 LSSPKQLGDILFTKLKFPSGAKTKTGQWK---------TTAQDLEQINCGDNPIIKNILE 673 LSS + +ILFT LK P K+ K T + LEQIN +P+ I E Sbjct: 76 LSSGDNVSEILFTDLKIPPPEIAKSTSRKNRLKKQYYLTNSVVLEQIN-HYHPLPSIISE 134 Query: 674 WRQLSKIKSTYADSLPNHINK----RTQRVHTFYSLASTMTGRLASLEPNLQNI--PI-- 725 +R L+ S Y D L ++ + + R+++ TGR+A PNLQNI PI Sbjct: 135 YRVLTHHISHYIDVLGKYLFRSDHYQMDRIYSTIQQTIVPTGRIAMENPNLQNISHPIDF 194 Query: 726 ----KTDLGQK------------------------------------IRRAFISPPTKKL 745 + D Q+ IR AFI KL Sbjct: 195 KRAPEIDFSQESIKSFNESLDRFEYLSDEHYLSLLQMDKSCDVITVSIRNAFIPANGCKL 254 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKT 803 +S DY Q+ELRIL H+++ L ++F ++ DI + VA ++ + + V+ R+ AK Sbjct: 255 LSVDYGQLELRILTHLSQDPKLMEMFNCNINIDIFKYVAHQVGNIPYDSVTDSDRQQAKH 314 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 + + I+YG+ +A++L IP +A ++ + + + EY+E + V QNGY+ T+F Sbjct: 315 LVYGILYGMGIKSIASELHIPIEQARGKLENFKKTYNKLIEYLEMVEENVIQNGYIATLF 374 Query: 864 GRRIHYDEINSPKSSIRNINE--RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKML 921 GR ++ I+S K I++ RAA N+ QG+AADI + AMI + L+ + +M+ Sbjct: 375 GRVRNFSNIHSCKIDNNEISKVKRAARNSIPQGTAADIAKMAMIKIQDELDKNHFKAQMI 434 Query: 922 LQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 LQ+HDE++FEVPE E+ ++QII +SME + L V L + + + NW Sbjct: 435 LQLHDEILFEVPENELYQSAQIIKYSMENV----VKLSVSLPIKMSIGPNW 481 >gi|324502441|gb|ADY41075.1| DNA polymerase I [Ascaris suum] Length = 1076 Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 135/439 (30%), Positives = 228/439 (51%), Gaps = 32/439 (7%) Query: 547 NVILQLWLL-LRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQ----DLLKQVSAE 601 N+ L WLL L +L EK + L+ ++++++E TGI D+ DLL++ +E Sbjct: 649 NIRLYEWLLPLATRLSSEKSVS----LELESTELLARLEATGIAFDRQAGHDLLQRTKSE 704 Query: 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-----SGAKTKTGQWKTTAQD 656 +S SLE L+ FN SP ++ ++LF ++ G+ + T + Sbjct: 705 MS----SLEAEGRRLASMPFNFDSPSEIANVLFVRMGIQPVSGCGGSGAPRRHYSTNKEV 760 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN--KRTQRVHTFYSLASTMTGRLA 714 L+++ + I IL+WR K+ + + SL N + + R+H ++ T TGR+ Sbjct: 761 LQRL-APKHRIAAIILKWR---KLNTALSSSLQNLLRACRSNGRIHASFT-TFTGTGRVQ 815 Query: 715 SLEPNLQNIPIKTDLGQ-KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 S+ PN+QN+ + +R F++PP L+SADYSQ+ELR+LA ++K L ++F N Sbjct: 816 SVHPNVQNVQKDALIDSLSVRSLFVAPPGFVLVSADYSQLELRVLAGLSKDEGLCKLFRN 875 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 D + V + + N P R+ K + ++IIYG+ L ++ + A I+ Sbjct: 876 GGDFFQTV-TDRWNANTSIDVPLDRQKVKQLCYAIIYGMGAITLGERIGTTKQNAQHLIE 934 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 +F FP + +++ T R++ TI GRR S S R ER AIN+ IQ Sbjct: 935 SFFKEFPKVRSWMDATLESCRRDACAVTILGRRRPLKCGESVVQSDRARAERQAINSTIQ 994 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACL 953 GSA++I + A++ + K+L+D L ++++Q+HDE++ E+ E +TA + I +M A L Sbjct: 995 GSASEIFKSALLKLEKNLKD--LDARIVMQVHDEVIVELNEACFSTAVERIESAMLNA-L 1051 Query: 954 PKINLRVPLKVNIKVSNNW 972 P+ VPL V I NW Sbjct: 1052 PE--FPVPLSVKISSGTNW 1068 >gi|170592393|ref|XP_001900953.1| DNA polymerase I family protein [Brugia malayi] gi|158591648|gb|EDP30253.1| DNA polymerase I family protein [Brugia malayi] Length = 475 Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 124/403 (30%), Positives = 202/403 (50%), Gaps = 25/403 (6%) Query: 581 SQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP 640 S++EITGI D++ +++++ + L +E Y +SG FN S ++ ILF +L+ P Sbjct: 82 SEIEITGIAFDRNKALTLNSKLQQKLTEIEAKAYGISGIPFNFGSAAEISQILFVRLQIP 141 Query: 641 SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ--R 698 + + T L+Q+ PII ILEWR +I + SLP + R Sbjct: 142 PPNASTGRHYSTNKIVLQQL-APKYPIISLILEWR---RINTALTTSLPILLKLCCSDGR 197 Query: 699 VHTFYSLASTMTGRLASLEPNLQNIPIKTDL-GQKIRRAFISPPTKKLISADYSQIELRI 757 + + + TGR+ ++ PN+QN+ + G IR FI P + L+S+DY Q+E+R+ Sbjct: 198 IRANF-ITHCCTGRVLTVHPNVQNVQKDAIIDGFSIRSLFIVPKGRILLSSDYRQLEMRM 256 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAA-----EIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 LAH++ L +F D ++ E + ++ R K + + IIYG+ Sbjct: 257 LAHLSADPNLISLFLTKDDFFEIITNKWNKNETLHIKVD------RNKVKQLCYGIIYGM 310 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 L+ +L I + A I +F FP + +++K R NG+V T+ GRR +I Sbjct: 311 GAISLSKELGISKQHAQQMIISFFQLFPKVRTWMDKILAMCRTNGFVSTLLGRRRFLPQI 370 Query: 873 NSPKSSIRNIN-ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFE 931 S ER AIN IQGS A++ + A++++ K+L + +++Q+HDE++ E Sbjct: 371 TSAVLQTELAQAERQAINTCIQGSVAELFKMALLNLRKNLLGTN--SSIVMQLHDEVLIE 428 Query: 932 VPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 E I + +II HSM P NLRVPL V I +W E Sbjct: 429 TDESSIASIVEIIKHSMTSVT-P--NLRVPLAVKISFGKSWGE 468 >gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo] gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis] Length = 1613 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 150/529 (28%), Positives = 272/529 (51%), Gaps = 46/529 (8%) Query: 463 LKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRS--SHDIASIAQKWLSYTRKE 519 +K+ HN K+D L G +++G D M+ + +L + R S + +A+++L+ Sbjct: 1115 VKVLHNGKFDINFLSHNGFNVKGPIFDTMIAAKLLSATRFNWSCKLGHVAERYLNIV--- 1171 Query: 520 ILKSRK-SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMID 578 + KS++ S +D + + QV +A ++ V+L L+ +L+ KL E+L + + ++ + Sbjct: 1172 LDKSQQFSDWTLDPLFEEQVI-YASRDTAVLLPLYFILQEKLKAERLDMIAD-IENKCVL 1229 Query: 579 VVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG----EKFNLSSPKQLGDILF 634 V QME GI++D D LK + A + K + +++ D G FN +S +Q+ L Sbjct: 1230 AVCQMEQNGIKVDLDKLKSLQAALDKENETAMKHLGDTLGVSSNPNFNYNSQRQILQALQ 1289 Query: 635 TKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINK 694 + KT+ G + T++ N +P I+ + E+R+ +K + + + +PNHI+ Sbjct: 1290 QQKVMD---KTRRGLIQDTSERTLSRNT-YHPAIQALREYRKTNKAVTAFTEKIPNHIDS 1345 Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754 T R++ + +GR + PNLQ IP + + R FI+ KL+ AD+SQIE Sbjct: 1346 ATGRIYPNINQIGAESGRFSCDNPNLQQIPRDS----RFRECFIADKGNKLVIADFSQIE 1401 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS- 813 LRI A IA+ + + + + D+H + A+ + I +V+ + R+ AK +NF +I+G+S Sbjct: 1402 LRIAADIAEDRRMIEAYNSGEDLHSLTASLVKNKPISEVTKEERQLAKAVNFGLIFGMSL 1461 Query: 814 -PFR------LATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRR 866 FR L +P A + +F + GI + E+ K + V T+ R Sbjct: 1462 AGFRNYAESCYGVVLSVP--AAREIYDSFFKSYSGITAWHERMK--AAKPISVRTLSNRL 1517 Query: 867 IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHD 926 +D+ + +S +N P+QG++ADIT+ AM + + D ++ KM+L IHD Sbjct: 1518 SVFDQFSFTRS----------LNYPVQGTSADITKEAMALLVDRVAD--ISGKMILCIHD 1565 Query: 927 ELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975 E++ EVPE A ++++ +ME A K VP K + ++W E+ Sbjct: 1566 EIILEVPESNANKALEVLIETMETAG-NKFLRYVPCKAMGSIGDSWAEK 1613 >gi|270695696|ref|ZP_06222972.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212] gi|270315979|gb|EFA28032.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212] Length = 288 Score = 181 bits (460), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 94/216 (43%), Positives = 135/216 (62%), Gaps = 1/216 (0%) Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 IELRI+AH++ L F DIH AAEIFGV++++V+ + RR+AK INF +IYG+ Sbjct: 1 IELRIMAHLSGDQGLINAFSQGKDIHLSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGM 60 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S F L+ QL I R +A Y+ YF R+P + +++ + + GYVET+FGRR++ +I Sbjct: 61 SAFGLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDI 120 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 NS + R ER AINAP+QG+AADI +RAMI + + + H +M++Q+HDELVFEV Sbjct: 121 NSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKIDEVIR-HDPDIEMIMQVHDELVFEV 179 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 E++ + I ME A K L P +N V Sbjct: 180 RSEKVAFFREQIKQHMEAAAEFKTRLNTPKNLNFIV 215 >gi|13892061|gb|AAK39635.1| DNA polymerase theta [Homo sapiens] Length = 2724 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 2084 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 2143 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 2144 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 2202 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 2203 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 2262 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 2263 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 2322 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R + ++ F + + T TGR+ Sbjct: 2323 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 2377 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 EPN+QN+P + T +G+ Sbjct: 2378 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 2437 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ R +A Sbjct: 2438 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 2497 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 2498 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 2557 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 2558 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 2617 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 2618 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 2677 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 2678 YEVVEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 2718 >gi|307702768|ref|ZP_07639719.1| putative exonuclease [Streptococcus oralis ATCC 35037] gi|307623681|gb|EFO02667.1| putative exonuclease [Streptococcus oralis ATCC 35037] Length = 362 Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 117/288 (40%), Positives = 156/288 (54%), Gaps = 17/288 (5%) Query: 7 LFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 L L+DGSS +RAF+A L R +GL NAI GF ML +L+ R E SH V Sbjct: 6 LLLIDGSSVAFRAFFALYQQLDRFKNANGLHTNAIYGFQLMLNHVLE--RVE--PSHVLV 61 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD TFR E+Y DYK R K P+ Q P +R GI E+ +EADDII T Sbjct: 62 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHLGIRHYELAQYEADDIIGT 121 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 +AEK+ F VTI+S DKDL+QL T + + K E +++++K G+ P + Sbjct: 122 LGRLAEKDSFDVTIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEKMGLTPAQF 181 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+AL GD DNIPG+ IG KT LL E+G+LE I N +K K +EN++ E Sbjct: 182 IDLKALMGDKSDNIPGVTKIGEKTGIKLLLEHGSLEGIYENIDGMKASKMKENLINDKEQ 241 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKL 284 A LS+ L + T PI I L+ L+ NGP L F + F +L Sbjct: 242 AFLSKTLATIETQAPIEIGLDDLV---YNGPDVENLGKFYDEMGFKQL 286 >gi|301116858|ref|XP_002906157.1| DNA polymerase I, putative [Phytophthora infestans T30-4] gi|262107506|gb|EEY65558.1| DNA polymerase I, putative [Phytophthora infestans T30-4] Length = 1054 Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 163/307 (53%), Gaps = 37/307 (12%) Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRI 757 RVH +L +T TGRL+S +PNLQN P KIR AF +PP KKLI ADYSQ+ELR+ Sbjct: 749 RVHCSLNL-NTDTGRLSSRKPNLQNQPAMGKDRYKIRDAFTAPPGKKLIVADYSQLELRL 807 Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIF------------------GVNIEKVSPQM-- 797 +AHI + + + F+ D H A ++ E +P + Sbjct: 808 MAHITQCKAMIEAFKAGGDFHSRTAMGMYPYVAKAVENGEALLEWDHTTGKEPPAPLLKD 867 Query: 798 -----RRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852 R++AK +NFSI YG + F LA + R EAAD +++++ + ++ +K Sbjct: 868 KYGDERKNAKVLNFSIAYGKTAFGLAKDFNVSRKEAADTLEKWYSDRGEVRDWQKKAIET 927 Query: 853 VRQNGYVETIFGR-------RIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 R GY T+ GR + D + S K+ R ERAAIN PIQG+AAD+ +AM+ Sbjct: 928 ARTFGYTRTLLGRYRRLPDAMLRDDSMTSKKA--RGHAERAAINTPIQGAAADVVMQAML 985 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 VH S +L M+ QIHDE++ E PEE + A +++VH ME + L V L+V+ Sbjct: 986 QVHHSPRLRELGWGMVSQIHDEIIVEGPEESVDEAMKLVVHLMENPF--QKPLSVALEVD 1043 Query: 966 IKVSNNW 972 V ++W Sbjct: 1044 ANVDDSW 1050 Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%) Query: 450 LSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSGR 500 L K+F E++++LK+ HN +D+ VL +GI+++G D M M+ + ++ R Sbjct: 393 LQLFKEFLESKNYLKVWHNYSFDRHVLFNHGINVQGLGGDTMHMARLWNTAR 444 >gi|225388911|ref|ZP_03758635.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme DSM 15981] gi|225045020|gb|EEG55266.1| hypothetical protein CLOSTASPAR_02651 [Clostridium asparagiforme DSM 15981] Length = 711 Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 98/290 (33%), Positives = 163/290 (56%), Gaps = 13/290 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + L L+DG S + RAFY P L+ +GL NA+ GF N+++K+L+ + A H AV Sbjct: 2 DKLVLIDGHSILNRAFYGVPDLTNS-EGLHTNAVYGFLNIMFKILEEEK----ADHLAVA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+++Y YK R +PE L Q+ L++ A G+P + + G+EADDI+ T Sbjct: 57 FDLKEPTFRHQMYEAYKGTRKPMPEELHEQVALMKEVLTAMGVPILTLPGYEADDILGTV 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPE 177 ++KEG V+++S D+DL+QL P T T + E V +++ + P Sbjct: 117 AKRSQKEGIQVSVVSGDRDLLQLADEHIKIRIPKTSRGGTEVHDYYP-EDVKREYQVTPA 175 Query: 178 KMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYA 237 + + ++AL GDS DNIPG+P IG KTA ++ YG++EN + I+ + ++ + E+ Sbjct: 176 EFIDVKALMGDSSDNIPGVPSIGEKTATAIISAYGSIENAYAHLEEIRPPRAKKALEEHY 235 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINR 287 + A++S++L + D P+ +E+ P ++K LEF ++ R Sbjct: 236 DMAQMSKELATICLDCPVAFEYGKTQIENLYTPEAYQYMKRLEFKSILTR 285 Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 166/281 (59%), Gaps = 7/281 (2%) Query: 488 DIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILKSRKSSIPIDKISDSQVQEHAIE 544 D + Y+L+ + S+ +A+ +L T R ++L ++S + D + A Sbjct: 434 DAGVAGYLLNPLKDSYGYDDLARDFLGLTVPSRADLL-GKQSLGDALWMKDPKAVSCACY 492 Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 V ++ L +L + ++ ++ P+I +S ME G++++++ LK+ + + Sbjct: 493 MGYVAMKAAAPLTERLKQTGMYQLFIEIEMPLIYSLSSMEQAGVKVEREELKEYGSRLKV 552 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGD 664 + LE+ IY +G++FN++SPKQLG+ILF + P G KTKTG + T A LE++ D Sbjct: 553 QIDVLEQEIYRDTGKEFNINSPKQLGEILFGDMALPGGKKTKTG-YSTAADVLEKL-APD 610 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIP 724 P+++ IL++RQL+K+ STYA+ L I R+H ++ T TGR++S EPNLQNIP Sbjct: 611 YPVVQKILDYRQLTKLYSTYAEGLAAFIGS-DGRIHGKFNQTITATGRISSTEPNLQNIP 669 Query: 725 IKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKIT 765 ++ +LG++IR+ F+ + ADYSQIELRILAH++ T Sbjct: 670 VRMELGREIRKVFVPREGSVFVDADYSQIELRILAHMSGTT 710 >gi|221108884|ref|XP_002170257.1| PREDICTED: similar to DNA polymerase theta, partial [Hydra magnipapillata] Length = 493 Score = 181 bits (458), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 139/482 (28%), Positives = 232/482 (48%), Gaps = 99/482 (20%) Query: 559 KLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG 618 +L E L+ + ++ P I + +EI GI +++ + L S+++ Y LSG Sbjct: 37 RLKREDLIKSFVDIEMPTIRTLLVIEINGIGFSDIECEKLKEILKGKLDSIQQECYKLSG 96 Query: 619 EKFNLSSPKQLGDILFTKL-KFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677 F+LSSP + + KL KF + + K ILEWR++ Sbjct: 97 SVFSLSSPADVAREVLEKLSKF-------------------------HALPKLILEWRKI 131 Query: 678 SKIKSTYADSLPNHINKRTQRV---HTFYSLA--STMTGRLASLEPNLQNIPIKTDL--- 729 + + + P KR+ V H ++ A T TGR+ EPNLQN+P + D+ Sbjct: 132 NSTLTKFV--YPVQRRKRSSDVLQMHRIFTEAIYRTCTGRVTFSEPNLQNVPKEFDIKLS 189 Query: 730 ------------GQK---------------------------------IRRAFISPPTKK 744 G K +R F+ + Sbjct: 190 SLVVKSPPHQITGNKKHKRQLVSSTRPLLSQQKDKHIGSSTTEMFTVSMRSTFVPFSSGV 249 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTI 804 +++ADY Q+ELRI+AH+++ L + S D+ + +AAEI +N+ V+ R+HAK I Sbjct: 250 MVAADYEQLELRIIAHMSQDQILIKTLNESGDVFKSIAAEINHINVVDVTTVQRQHAKQI 309 Query: 805 NFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFG 864 + IIYGI L+ QL + ++A++Y++++ +RF G+ +I+ T R NG+V+T+ G Sbjct: 310 CYGIIYGIGIKALSHQLGVEENDASEYMEKFKNRFKGVKRFIQNTIEEARANGFVKTLGG 369 Query: 865 RRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED-------HKLA 917 R+ + INS ++ ++ ER A+N IQGSAAD+ + AM ++ L +KLA Sbjct: 370 RKRYLPAINSKITNDKSHAERQAVNTTIQGSAADLVKIAMNNIDIKLNKIFGNSCFNKLA 429 Query: 918 TK-------MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970 K ++LQIHDEL++EV +E + ++I ME A I L V + V +K+ + Sbjct: 430 EKSQPKGAYLVLQIHDELLYEVNKENVDIVIKLIRREMESA----IILTVKMPVKVKIGS 485 Query: 971 NW 972 +W Sbjct: 486 SW 487 >gi|224126389|ref|XP_002319826.1| predicted protein [Populus trichocarpa] gi|222858202|gb|EEE95749.1| predicted protein [Populus trichocarpa] Length = 834 Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 107/307 (34%), Positives = 156/307 (50%), Gaps = 27/307 (8%) Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 I+ + RVH ++ +T TGRL++ PNLQN P KIR+AFI+ P LI ADY Sbjct: 525 ISGKGGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYG 583 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF--------------------GVN-- 789 Q+ELRILAH+A + F+ D H A ++ G N Sbjct: 584 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYPHIREAIEKKQVLLEWYPQPGENKP 643 Query: 790 ----IEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 ++ RR AK +NFSI YG +P L+ ++ +EA + + ++ + ++ Sbjct: 644 PVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVLKW 703 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 + K R+NG V T+ GR + + SS+R ERAAIN P+QGSAAD+ AM+ Sbjct: 704 QQARKKEARENGRVYTLLGRARVFPSLTDASSSLRGHVERAAINTPVQGSAADVAMCAML 763 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 + K+ +L K+LLQ+HDE++ E P E A I+V M K K L V L V+ Sbjct: 764 EISKNTRLQELGWKLLLQVHDEVILEGPTESAEVAKAIVVGCMSKPFGGKNFLNVDLAVD 823 Query: 966 IKVSNNW 972 K + NW Sbjct: 824 SKCAQNW 830 Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500 +++L+ FFE+ K+ HN +D V+ YG S+ GF D M M+ + DS R Sbjct: 122 RDLLNEFALFFEDPDIKKVWHNYSFDNHVIENYGFSVSGFHADTMHMARLWDSSR 176 >gi|213580148|ref|ZP_03361974.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 281 Score = 180 bits (457), Expect = 1e-42, Method: Composition-based stats. Identities = 104/280 (37%), Positives = 155/280 (55%), Gaps = 11/280 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 EN L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 ENPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYQ----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+ L +T+ + + V+ K+G+PPE ++ Sbjct: 121 LAREAEKVGRPVLISTGDKDMAQLVTQNITLINTMTNTILGPDEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIK------QKKRRENILEYA 237 AL GDS DNIPG+PG+G KTA LLQ G L+ + +I K + + Sbjct: 181 ALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAGKLAQNK 240 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277 + A LS KL ++TDV + + E L ++ L+ K Sbjct: 241 DVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLFK 280 >gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] Length = 586 Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 159/556 (28%), Positives = 287/556 (51%), Gaps = 73/556 (13%) Query: 452 YLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSGRSS--HDIASI 508 +LK+ E++ +GHN+K+D K + + + + D + S +L G +S H ++++ Sbjct: 72 FLKEVLESKGI--VGHNLKFDLKFLATNFDVYPKVVFDTFIASKILAKGDNSQKHSLSAV 129 Query: 509 AQKWLSYTRKEILKSRKSSIP--IDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEK-- 564 A + T +E+ K+ ++S P ++ ++ Q+ E++ ++ V+ ++ +L E+ Sbjct: 130 A---VRLTDEEVDKTYQTS-PWWVENLTKEQI-EYSAKDIEVLRSIFREQVVRLNEEQTH 184 Query: 565 ------------LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612 +++ L+ + + +E++GI ID+ KQ+S I KN + +N Sbjct: 185 LKSSGETYKVFGVVNPVAALEMAFLPCLVSIELSGIPIDE---KQLSNLI-KNSKTTFQN 240 Query: 613 IYDLSGEKFNLS--SPKQLGDILFTKL--KFPSGAKTKTGQWKTTAQDLEQINCGDNPII 668 +Y K+ + SP+Q+ + L KL K P KT+ G + ++QD+ D P + Sbjct: 241 LYIEFKRKYYIDPFSPQQVANFLTKKLGLKLP---KTEKGSF--SSQDVHLKPYEDKPEV 295 Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD 728 K +L R K + L ++ + RV+ + TGR++S +PNLQNIP Sbjct: 296 KTLLSIRYEKKTLDK-LEELSKYV--KNSRVYGEFKQIGASTGRMSSYKPNLQNIP---- 348 Query: 729 LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGV 788 + ++ F +P I ADYSQIELRI A K + + F+ D+H++ A+ I G Sbjct: 349 --KNLKSIFRAPDGYLFIIADYSQIELRIAAEYTKDKSMIKAFQEKKDLHKLTASVITGK 406 Query: 789 NIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR------IPRSEAADYIKRYFHRFPGI 842 + ++++ + R AK INF +IYGISP L + I S+A + + +F+ +P Sbjct: 407 DYQEITKEERNLAKAINFGLIYGISPKSLVEYAKNNYDIDITLSQAKTFHENFFNFYPKF 466 Query: 843 HEYIEKTKNFVRQNGY--VETIFGRR-IHYDEINSPKSSIRNINERAAINAPIQGSAADI 899 E+ E KN++ ++ + VET+ GR+ I Y + A+N PIQGS +D+ Sbjct: 467 KEWHENVKNYLEKHKFIQVETLLGRKLIAYKFTD-------------AVNYPIQGSGSDL 513 Query: 900 TRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLR 959 + A++ +KSL D L K++ +HDE+V EV +E++ +I+ SMEKA + Sbjct: 514 LKMAVVLFYKSLLD--LDAKVVNLVHDEIVVEVKQEDVDKVQEILSQSMEKAGRYLLK-E 570 Query: 960 VPLKVNIKVSNNWQEE 975 VP++ I VS +W +E Sbjct: 571 VPVEFEINVSKSWSKE 586 >gi|222616936|gb|EEE53068.1| hypothetical protein OsJ_35810 [Oryza sativa Japonica Group] Length = 2044 Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 127/427 (29%), Positives = 207/427 (48%), Gaps = 47/427 (11%) Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611 L +LR L+ + L + E ++ P+++V++ ME+ GI D D + I + L LE+ Sbjct: 1601 LCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIRKLKELEK 1660 Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW--KTTAQDLEQINCGDNPIIK 669 Y L+G+ F+L++ + D+L+T LK P G+ T Q L+ + +PII Sbjct: 1661 EAYKLAGKSFSLNATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLR-DQHPIIS 1719 Query: 670 NILEWRQLSKIKSTYADSLPN--HINKRTQR--VHTFYSLASTMTGRLASLEPNLQNIPI 725 I E R L+K+ + S+ + + ++QR + + ST TGRL+ EPNLQ + Sbjct: 1720 VIKEHRTLAKLLNGTLGSICSRAQLCSKSQRYIIQGNWLQTSTATGRLSMEEPNLQENWL 1779 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAE 784 L++ADYSQIELR++AH +K T L ++ D+ M+A+ Sbjct: 1780 -------------------LVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASR 1820 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 G + + R K + I+YG+ LA QL +AA I+ + FPG+ Sbjct: 1821 WTGKAESLICSKERETTKRFIYGILYGMGANSLAEQLECSPEDAAQKIQSFKRFFPGVSS 1880 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 ++ + R GYVET+ GRR +I + S + +R A+N+ QGSAADI + AM Sbjct: 1881 WLHEAVASCRHKGYVETLMGRRRFLSKITAGNSKEKAKAQRQAVNSICQGSAADIIKVAM 1940 Query: 905 ISVHKSLEDHKLA--------------------TKMLLQIHDELVFEVPEEEITTASQII 944 I VH ++ + ++LQ+HDELV EV + A +++ Sbjct: 1941 IKVHSAITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCMVAEAVRLL 2000 Query: 945 VHSMEKA 951 ME + Sbjct: 2001 QTVMENS 2007 >gi|108862506|gb|ABA97168.2| DNA polymerase I family protein, expressed [Oryza sativa Japonica Group] Length = 2065 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 127/427 (29%), Positives = 207/427 (48%), Gaps = 47/427 (11%) Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611 L +LR L+ + L + E ++ P+++V++ ME+ GI D D + I + L LE+ Sbjct: 1622 LCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIRKLKELEK 1681 Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW--KTTAQDLEQINCGDNPIIK 669 Y L+G+ F+L++ + D+L+T LK P G+ T Q L+ + +PII Sbjct: 1682 EAYKLAGKSFSLNATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLR-DQHPIIS 1740 Query: 670 NILEWRQLSKIKSTYADSLPN--HINKRTQR--VHTFYSLASTMTGRLASLEPNLQNIPI 725 I E R L+K+ + S+ + + ++QR + + ST TGRL+ EPNLQ + Sbjct: 1741 VIKEHRTLAKLLNGTLGSICSRAQLCSKSQRYIIQGNWLQTSTATGRLSMEEPNLQENWL 1800 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAE 784 L++ADYSQIELR++AH +K T L ++ D+ M+A+ Sbjct: 1801 -------------------LVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASR 1841 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 G + + R K + I+YG+ LA QL +AA I+ + FPG+ Sbjct: 1842 WTGKAESLICSKERETTKRFIYGILYGMGANSLAEQLECSPEDAAQKIQSFKRFFPGVSS 1901 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 ++ + R GYVET+ GRR +I + S + +R A+N+ QGSAADI + AM Sbjct: 1902 WLHEAVASCRHKGYVETLMGRRRFLSKITAGNSKEKAKAQRQAVNSICQGSAADIIKVAM 1961 Query: 905 ISVHKSLEDHKLA--------------------TKMLLQIHDELVFEVPEEEITTASQII 944 I VH ++ + ++LQ+HDELV EV + A +++ Sbjct: 1962 IKVHSAITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCMVAEAVRLL 2021 Query: 945 VHSMEKA 951 ME + Sbjct: 2022 QTVMENS 2028 >gi|224050209|ref|XP_002195724.1| PREDICTED: similar to polymerase (DNA directed) nu [Taeniopygia guttata] Length = 631 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 122/380 (32%), Positives = 201/380 (52%), Gaps = 37/380 (9%) Query: 560 LIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE 619 L + L +++ L+ P+I +++ ME I +D+ LK+ S + L LE ++++GE Sbjct: 236 LKAQGLWNLFCTLELPLIKILAVMETHKIYVDKQELKKTSEILGLRLKELEREAHEVAGE 295 Query: 620 KFNLSSPKQLGDILFTKLKFPSGA----KTKTGQWKTTA-------QDLEQINCGDNPII 668 +F L+S QL ++LF KLK + +T+ Q +T+ QDL +P+ Sbjct: 296 RFLLTSSCQLREVLFDKLKLHTLCEKLQRTEIQQLVSTSEVVLNKLQDL-------HPLP 348 Query: 669 KNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI---PI 725 K ILE+RQ+ K+KSTY D L + K + + ++ T+TGRL++ PN+Q I P+ Sbjct: 349 KIILEYRQVHKMKSTYVDGLRTCMKKGF--ISSTWNQTGTVTGRLSAKHPNIQGISKHPV 406 Query: 726 KTDLGQKI------------RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN 773 Q I R F+S ++AD+S IELRILA ++ L ++F+ Sbjct: 407 TIAKKQYIKGKEEDIITISPRTLFVSKKGCTFLAADFSHIELRILADLSSEPELLKLFQE 466 Query: 774 S--LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADY 831 DI +A++ G+ E+V R AK I +S++YG RLA L I +A+ + Sbjct: 467 PEITDIFATLASQWKGIPSEQVKHADREQAKRIVYSVVYGAGKERLADCLGITPVQASQF 526 Query: 832 IKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAP 891 I+ + ++ +HE+ +KT R GYV +I GR+ IN+ +R ER A+N Sbjct: 527 IESFMQKYKKVHEFTKKTIEQCRNKGYVVSIMGRKRPLANINAQDYKLRTQAERQAVNFV 586 Query: 892 IQGSAADITRRAMISVHKSL 911 +QGSAAD+ + AM+ + S+ Sbjct: 587 VQGSAADLCKMAMVKIFASI 606 >gi|3510695|gb|AAC33565.1| DNA polymerase theta [Homo sapiens] Length = 1762 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 168/645 (26%), Positives = 283/645 (43%), Gaps = 131/645 (20%) Query: 451 SYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRSSHDIASIA 509 S L+K + E + I I+ K++L GIS+ + +ED + ++LD + SI Sbjct: 1122 SCLRKESDKECSVVIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIV 1181 Query: 510 QKWLSYTRKEILKSRKSSIPIDKISDSQVQEH-----AIENSNVILQLWLLLRPKLIVEK 564 +L + +L+ ++S I + + EH A S +I L L E Sbjct: 1182 TSFLPH-ELPLLEGMETSQGIQSLGLNAGSEHSGRYRASVESILIFNSMNQLNSLLQKEN 1240 Query: 565 LLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLS 624 L V+ +++ P ++ +E+ GI + + L ++E Y L+G F+ + Sbjct: 1241 LQDVFRKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFT 1300 Query: 625 SPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQDLEQINC 662 S + ++LF +LK P +G K + G+ +T++D+ Sbjct: 1301 SSDDIAEVLFLELKLPPNREMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLK 1360 Query: 663 GDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------ASTMTGRLA 714 +P+ ILEWR+++ + L +R + ++ F + + T TGR+ Sbjct: 1361 ALHPLPGLILEWRRITNAITKVVFPL-----QREKCLNPFLGMERIYPVSQSHTATGRIT 1415 Query: 715 SLEPNLQNIP------IKTDLGQK------------------------------------ 732 EPN+QN+P + T +G+ Sbjct: 1416 FTEPNIQNVPRDFEIKMPTLVGESPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERA 1475 Query: 733 ----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVA 782 +R AF+ P +++ADYSQ+ELRILAH++ L QV D+ R +A Sbjct: 1476 ADRGMPFSISMRHAFVPFPGGSILAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIA 1535 Query: 783 AEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 AE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + R+ GI Sbjct: 1536 AEWKMIEPESVGDDLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGI 1595 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 ++++ +T +++G+V+TI GRR + I + ER AIN +QGSAADI + Sbjct: 1596 NQFMTETVKNCKRDGFVQTILGRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKI 1655 Query: 903 AMISVHKSLE-------DHKLATKML--------------------------LQIHDELV 929 A +++ K LE H ML LQ+HDEL+ Sbjct: 1656 ATVNIQKQLETFHSTFKSHGHREGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELL 1715 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +EV EE++ +QI+ + ME A + L V LKV +K+ +W E Sbjct: 1716 YEVVEEDVVQVAQIVKNEMESA----VKLSVKLKVKVKIGASWGE 1756 >gi|218186696|gb|EEC69123.1| hypothetical protein OsI_38041 [Oryza sativa Indica Group] Length = 1986 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 127/427 (29%), Positives = 207/427 (48%), Gaps = 47/427 (11%) Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611 L +LR L+ + L + E ++ P+++V++ ME+ GI D D + I + L LE+ Sbjct: 1543 LCSVLRKLLVSQNLNDLLETIEGPLVNVLADMELWGIGADMDACLRARHIIIRKLKELEK 1602 Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQW--KTTAQDLEQINCGDNPIIK 669 Y L+G+ F+L++ + D+L+T LK P G+ T Q L+ + +PII Sbjct: 1603 EAYKLAGKSFSLNATADIADVLYTHLKLPVPKGCGKGKLHPSTDKQSLDHLR-DQHPIIS 1661 Query: 670 NILEWRQLSKIKSTYADSLPN--HINKRTQR--VHTFYSLASTMTGRLASLEPNLQNIPI 725 I E R L+K+ + S+ + + ++QR + + ST TGRL+ EPNLQ + Sbjct: 1662 VIKEHRTLAKLLNGTLGSICSRAQLCSKSQRYIIQGNWLQTSTATGRLSMEEPNLQENWL 1721 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN-SLDIHRMVAAE 784 L++ADYSQIELR++AH +K T L ++ D+ M+A+ Sbjct: 1722 -------------------LVTADYSQIELRLMAHFSKDTALIELLSKPDGDVFTMIASR 1762 Query: 785 IFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHE 844 G + + R K + I+YG+ LA QL +AA I+ + FPG+ Sbjct: 1763 WTGKAESLICSKERETTKRFIYGILYGMGANSLAEQLECSPEDAAQKIQSFKRFFPGVSS 1822 Query: 845 YIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAM 904 ++ + R GYVET+ GRR +I + S + +R A+N+ QGSAADI + AM Sbjct: 1823 WLHEAVASCRHKGYVETLMGRRRFLSKITAGNSKEKAKAQRQAVNSICQGSAADIIKVAM 1882 Query: 905 ISVHKSLEDHKLA--------------------TKMLLQIHDELVFEVPEEEITTASQII 944 I VH ++ + ++LQ+HDELV EV + A +++ Sbjct: 1883 IKVHSAITNGSTVGATVDSIDVAMQNFSEIRGRCHLILQVHDELVLEVDPCMVAEAVRLL 1942 Query: 945 VHSMEKA 951 ME + Sbjct: 1943 QTVMENS 1949 >gi|288818109|ref|YP_003432457.1| 5'-3' exonuclease [Hydrogenobacter thermophilus TK-6] gi|288787509|dbj|BAI69256.1| 5'-3' exonuclease [Hydrogenobacter thermophilus TK-6] gi|308751710|gb|ADO45193.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein [Hydrogenobacter thermophilus TK-6] Length = 289 Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 112/282 (39%), Positives = 158/282 (56%), Gaps = 9/282 (3%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L L+DGS+FIYR+F+A P LS K DG P AI GF + +L+ + F V FD Sbjct: 4 LCLLDGSAFIYRSFFALPPLSTK-DGFPTGAIYGFMRAVLHILKAEKTRC----FVVAFD 58 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTY 126 +PA T R E YK+ RP +P+ L Q+P+++ + GIP IE+ G+EADD+I T Sbjct: 59 HPAPTIRKEASSTYKSKRPSMPDPLRLQIPVIKELLKLLGIPVIEVPGYEADDVIGYITE 118 Query: 127 IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALT 186 A GF+V I S DKD++QLVS + + + E DI+ V +K+G+ P + L AL Sbjct: 119 RALSFGFSVRIYSPDKDILQLVSQKVQVINPISGEVFDIKRVEEKFGVKPHLIPHLLALV 178 Query: 187 GDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKL 246 GD DNI G+ GIG KTA +L++YG++ENIL N K + + LS L Sbjct: 179 GDQTDNIEGVKGIGKKTAIKVLEKYGSIENILRNFDDFKASFPHAD----RDKLELSYYL 234 Query: 247 VMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 V L+ +TI + L +++ N L + L LE LI V Sbjct: 235 VKLQPPPELTIEEDQLCMKEPNMEALKAKLLELEMKSLIKDV 276 >gi|260794541|ref|XP_002592267.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae] gi|229277483|gb|EEN48278.1| hypothetical protein BRAFLDRAFT_70998 [Branchiostoma floridae] Length = 595 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 144/563 (25%), Positives = 258/563 (45%), Gaps = 76/563 (13%) Query: 481 ISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQ 539 I+M G F+D + ++LD + + + ++L+ + +S + VQ Sbjct: 30 ITMNGNFQDPKVADWLLDPDAKVKRFDEMVKGQFTPQESDLLQGLRECFGEGSLSMT-VQ 88 Query: 540 EHAIENSNVILQLWLLLRPKLIVEKLLH------VYERLDKPMIDVVSQMEITGIQIDQD 593 + L+ + + KLL + ++ P + ++++E+ G + + Sbjct: 89 NAGSGQTRAALECVFTFHLMVKLSKLLEEQGLSTAFRNVEMPSLVALARLELNGAGFNPE 148 Query: 594 LLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF-----PSGAKTKTG 648 + + L LEE + L+G F L+S K + +L+ + K PS Sbjct: 149 ECETQCQVMKDRLRMLEERAHKLAGHTFALNSTKAVDKVLYEEKKLEINEDPSTNSQPQE 208 Query: 649 QWKTTAQD-LEQINCGD--NPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 + T+ + LE++ +P+ IL+W+ +S + + ++ + YS Sbjct: 209 RLSTSRKGVLEKLKTSHPLHPLPGVILKWKHISNLLNKVTPLQKKNVYNPRLNMDRIYST 268 Query: 706 AS--TMTGRLASLEPNLQNIP------IKTDLGQK-----------------IRRAFISP 740 + T TGR+A +PNLQ IP + TD + +R AFI Sbjct: 269 CNLHTATGRVAFHDPNLQFIPKEFEIEMPTDTNNEDGPPAAGEETMSKRKVCMRHAFIPF 328 Query: 741 PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH 800 +++ADYSQ+E+RI+AH++K + L Q + D+ + +A++ GV +E VS ++R+ Sbjct: 329 KGGVILAADYSQLEVRIMAHLSKDSKLTQALNSGQDVFKAIASQWKGVAVEHVSDKLRQQ 388 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 AK + + IIYG+ P L +L + + E I+ + + GI Y + T + ++NGYV+ Sbjct: 389 AKQLYYGIIYGMGPKTLGEKLGVSKEEGKRRIETFKSSYTGIQRYRQTTVDQCKRNGYVQ 448 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED------- 913 T+ RR + +IN + ER A N IQGSAAD+ ++AM+ + + L+ Sbjct: 449 TMAERRRYLPDINGEDYYKLSQAERQAFNTTIQGSAADLVKKAMVLIDQRLQQEFPDTRR 508 Query: 914 ---HKLATK---------------------MLLQIHDELVFEVPEEEITTASQIIVHSME 949 H +T ++LQ+HDEL++EV EE+ +QI+ H ME Sbjct: 509 SHRHGESTAAAADTDKRRSQQPSSPPRGAYLILQLHDELIYEVHEEDEQKVAQIVKHKME 568 Query: 950 KACLPKINLRVPLKVNIKVSNNW 972 KA + L V L V +KV W Sbjct: 569 KA----MELSVELPVKVKVGPTW 587 >gi|47216119|emb|CAG11187.1| unnamed protein product [Tetraodon nigroviridis] Length = 2382 Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 159/643 (24%), Positives = 278/643 (43%), Gaps = 161/643 (25%) Query: 469 IKYD-----KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEI-- 520 I YD K+++ GIS+ G ED + ++LD G + ++ Y +E+ Sbjct: 1754 IAYDIIRTYKVLVLSCGISLEGSCEDPKVACWLLDPGSEERTLPNMV---TVYCPEELPL 1810 Query: 521 ---LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMI 577 L S + P + S + V +A V+ +L LLR + +L + ++ P Sbjct: 1811 LGGLGSSHTHCPRVRASTASVLTYA-----VMGRLTGLLRE----DGVLDHFRSVEMPSQ 1861 Query: 578 DVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKL 637 ++ +E+ G+ ++ + L +LE Y L+G F+L+S + +LF +L Sbjct: 1862 VCLALLELNGVGFSAAECERQKHVMQAKLAALEGQAYRLAGHSFSLTSVDDVAQVLFLEL 1921 Query: 638 KFP-----SGAKTK----------------TGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 P +G+K+K Q+ TT LE++ +P+ ILEWR+ Sbjct: 1922 HLPPNGDVNGSKSKKTLGYGRRGGGGRVRLGKQFSTTKDVLEKLR-PLHPLPGLILEWRR 1980 Query: 677 LSKIKSTYADSLPNHINKRTQRVHT------FYSLASTMT-------------------- 710 ++ + L +R ++ H+ Y +A T T Sbjct: 1981 ITNALTKVVFPL-----QREKKHHSALSMDRIYPIAQTHTATGNPQTPEPCETCNMRWLS 2035 Query: 711 -----GRLASLEPNLQNIP----------------------IKTDLGQK----------- 732 GR++ EPN+QN+P + G+K Sbjct: 2036 LVLLPGRVSFTEPNIQNVPKDFEIQMATVVCESPPSQDGRHLAARKGKKRRSAVPSGAAA 2095 Query: 733 -----------IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMV 781 +R AF+ +++ADYSQ+ELR+LAH++K L QV D+ R + Sbjct: 2096 GSEQGPAFSVSMRHAFVPFSGGMILAADYSQLELRVLAHLSKDQRLLQVLNGGADVFRCI 2155 Query: 782 AAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPG 841 AAE V+ + V+ +R+ AK I + IIYG+ L Q+ + ++AA YI+ + R+ G Sbjct: 2156 AAEWKSVDPDSVTDGLRQQAKQICYGIIYGMGAKSLGEQMGVEENDAACYIETFKSRYRG 2215 Query: 842 IHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITR 901 I+ ++++T +NGYV+T+ GRR + I + + ++ ER A+N +QGSAADI + Sbjct: 2216 INAFLKETVKNCGKNGYVQTLMGRRRYLPGITNTNAHVKAHAERQAVNTTVQGSAADIVK 2275 Query: 902 RAMISVHKSLED--------------------------------HKLATKMLLQIHDELV 929 A +++ K L H +LQ+HDEL+ Sbjct: 2276 LATVNIQKRLRQTYPAAPLSHQHPAPVMGRFCGAGSSRRRAVTRHPRGGYFVLQLHDELI 2335 Query: 930 FEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +E +E++ +QI+ ME A + L V ++ +KV +W Sbjct: 2336 YETTDEDVIQVAQIVKREMETA----VKLYVKMRAKVKVGPSW 2374 >gi|94676906|ref|YP_588585.1| DNA polymerase I [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220056|gb|ABF14215.1| DNA polymerase I [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 306 Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 108/286 (37%), Positives = 166/286 (58%), Gaps = 13/286 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 L LVDGS ++YRA++A PLL+ + G P AI G NML L + SI A+IFD Sbjct: 2 LLLVDGSFYLYRAYHAFPLLTN-NLGEPTGAIYGVINMLNSLFKQYSTSSI----AIIFD 56 Query: 67 YPAVTFRNEIYPDYKANRPKIPEMLLPQL-PLVRLATQAFGIPAIEIQGFEADDIIATYT 125 FR++I+ DYK NR ++ + L Q+ PL ++ Q+ G+P + ++G E+DD+I T Sbjct: 57 AYGQNFRHKIFHDYKLNRTRMSKDLSCQIDPLYKI-IQSMGLPLLVVKGVESDDVIGTLA 115 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQAL 185 + A V I + DKD+ QLVSP L+++ ++ + V KK+G+ PE ++ AL Sbjct: 116 HQAMCNNINVLISTGDKDMAQLVSPKIHLFNSTMNMRLGPKEVQKKFGVLPELIIDYIAL 175 Query: 186 TGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRI------KQKKRRENILEYAET 239 GD DNIPG+PGIG KTA +LLQ++G L+ + N ++ + K + Y E Sbjct: 176 VGDKSDNIPGVPGIGKKTAKILLQQFGGLKFLYQNLHKLNHFNLCRNKNLATKLDNYREK 235 Query: 240 ARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLI 285 A LS +L +RT+V + I + LI+++ + +LI K EF + I Sbjct: 236 AFLSYQLATIRTNVMLDITYDQLIVKEPDYNQLIKLFKHYEFKRWI 281 >gi|148705497|gb|EDL37444.1| DNA polymerase N [Mus musculus] Length = 467 Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 132/468 (28%), Positives = 228/468 (48%), Gaps = 59/468 (12%) Query: 545 NSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK 604 N ++ L + L KL L ++ L+ P+I +++ ME I +D++ +++ SA + Sbjct: 6 NLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGA 65 Query: 605 NLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTK----TG------------ 648 L LE+ + ++GE+F + S QL +ILF KLK ++ K TG Sbjct: 66 RLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLSTSEAMT 125 Query: 649 QWKTTAQDLEQINCG---DNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL 705 QW+T+ C D+ ++ + L I ST+ + Sbjct: 126 QWRTSGVPAGPHCCATTADSCLLSWLYPIGLLGSISSTWNQT------------------ 167 Query: 706 ASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPTKKLISADY 750 T+TGRL++ PN+Q I PIK R F+S ++AD+ Sbjct: 168 -GTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEGHTFLAADF 226 Query: 751 SQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 SQIELRILAH++ L ++F+ S D+ + ++ + IE+V+ R K + +S+ Sbjct: 227 SQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSV 286 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YG RLA L + EA +++R+ ++ I ++ + GYV +I GRR Sbjct: 287 VYGAGKERLAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIGQCHSAGYVTSILGRRRP 346 Query: 869 YDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATKMLLQIHDE 927 I + +R ER A+N +QGSAAD+ + AMI + ++ L +++ QIHDE Sbjct: 347 LPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDE 406 Query: 928 LVFEVPEEEITTASQI---IVHSMEKACLPKINLRVPLKVNIKVSNNW 972 L+FEV + ++ + + I+ S+++ ++ L+VPLKVN+ V +W Sbjct: 407 LLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 454 >gi|332295728|ref|YP_004437651.1| 5'-3' exonuclease, resolvase-like domain-containing protein [Thermodesulfobium narugense DSM 14796] gi|332178831|gb|AEE14520.1| 5'-3' exonuclease, resolvase-like domain-containing protein [Thermodesulfobium narugense DSM 14796] Length = 296 Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 102/262 (38%), Positives = 154/262 (58%), Gaps = 9/262 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 E + L+D S IYRA+YA P L+ G+P NA+ GF N+L KL+ KE V Sbjct: 8 EKTICLIDAHSVIYRAYYALPELTSSA-GIPTNALYGFINILLKLI----KEEDPYTIFV 62 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 FD P TFR+E + +YKA+RPK+PE L+ Q+ L++ + I E+ G+E+DD++A+ Sbjct: 63 AFDSPEKTFRHESFKEYKASRPKMPESLISQVLLIKEFLKLMNIRFYEVPGYESDDLVAS 122 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 EK+ + V I++ D DL+QLVS + K EK D++ + K+GI P ++ Sbjct: 123 MAKQIEKKDYDVLILTGDFDLLQLVSERVKVLIMKKGISDVEKYDLDKFLTKFGIRPNQI 182 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 ++AL+GDS D IPG+ GIG KTA +L+++ +E +L N R K K+ RE I E E Sbjct: 183 ADMKALSGDSSDEIPGVKGIGKKTAIEILRQFNTVEELLKNIDRFKNKRYRELIYENKEK 242 Query: 240 ARLSRKLVMLRTDVPITIPLEH 261 + + +L TDV + I +E Sbjct: 243 ILFYKSITLLDTDVSLEIEIEE 264 >gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] Length = 662 Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 178/691 (25%), Positives = 321/691 (46%), Gaps = 125/691 (18%) Query: 351 FLERLQK-LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409 LE+ K L+ YP N Y I + + + +++LET I T +D S+ I Sbjct: 31 LLEKYSKNLTPYP--NADYEIISDDESLVTALKELETHTVVGLDIETTGLDPHTSEISLI 88 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 I+ ++ I I+ T++++ L++F E+ K+GHN+ Sbjct: 89 QIAAPNRP--------VILIEFRGITNKET-------------LRRFIEHPKIPKVGHNL 127 Query: 470 KYDKLVLHRY-GI--SMRGFEDIMLMSYVLDSG--------------------RS----- 501 ++ L ++ GI + + D MLMS +L +G RS Sbjct: 128 AFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTGVLPIPDLTRSIKNKK 187 Query: 502 ------------SHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549 S+ + + + L Y+ + L+ P+ + Q+Q +A ++ V+ Sbjct: 188 KLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDWGKPL---TQEQLQ-YAANDAAVV 243 Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD----LLKQV------S 599 L L LR K+I +L + ++ + V+QM + G+ +D D L K++ + Sbjct: 244 LPLREALRNKIIDNQLTDAIQ-VELGALARVAQMGLMGMGLDLDRWGELAKEIETRREDA 302 Query: 600 AEISKNLLSLEENIYDLSGEK--FNLSSPKQLGDILFTKLKFPSGAKTKTG-QWKTTAQD 656 A+I+ +L + +L G + NL S +Q+ A + G +T++D Sbjct: 303 AKIACQVLKPDHAQLNLFGGEASINLDSNEQV-----------IAALARLGIHTDSTSKD 351 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 ++P + I+E+R SK S++ + LP +N T R+H + +GR + Sbjct: 352 TLDKLSENHPEVFTIIEYRHWSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAASGRFSFS 411 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQ IP + ++ R F+ P KLI ADYSQIELRI A IA + + + N D Sbjct: 412 NPNLQQIPRE----RQYRSCFVPAPGYKLIIADYSQIELRIAAEIANDSVMIDAYCNEKD 467 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI----------PRS 826 +HR+ AA + G +I++V+ Q R+ K +NF +IYG+ AT+LRI Sbjct: 468 LHRLTAALVSGKDIDEVTKQERQLGKAVNFGLIYGMG----ATKLRIYAETNYGVSMTFD 523 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY--VETIFGRRIHYDEINSPKSSIRNINE 884 EA + +F +PG+H++ + T +R + T+ GR + + P +S+ Sbjct: 524 EAQRFRDNFFKGYPGLHQWHQDTACKLRTTKVKDIRTLSGRLRRWKD-EPPLTSL----- 577 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 +N P+QG++ADIT+ A+ ++ L++ + ++ +HDE+V EVPE+ + S ++ Sbjct: 578 ---LNTPVQGTSADITKLALHKLNSDLDE--IGGFPIVVVHDEIVLEVPEDHVAEGSAML 632 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975 +M A + VP+ V ++++W E+ Sbjct: 633 EEAMVSAG-KRFLKSVPVVVEAAIADSWAEK 662 >gi|126332210|ref|XP_001374207.1| PREDICTED: similar to polymerase (DNA directed) nu, [Monodelphis domestica] Length = 816 Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 120/391 (30%), Positives = 212/391 (54%), Gaps = 25/391 (6%) Query: 544 ENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEIS 603 +N ++ ++ + L KL V L ++ L+ P+I +++ ME Q+D++ +K+ S + Sbjct: 402 KNLRILYRITVDLCSKLKVCGLWQLFYTLELPLIPILAVMETHKFQVDKEEMKRTSKLLG 461 Query: 604 KNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKT------GQWKTTAQDL 657 L LE+ + +GE+F ++S QL ++LF KLK K+KT + +T++ + Sbjct: 462 CRLKELEQEAHVAAGEQFLVTSNNQLREVLFDKLKLHLLCKSKTLPKTELQKHPSTSEAV 521 Query: 658 EQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 +P+ K ILE+RQ+ K+KST+ D L + + R + ++ T++GRL++ + Sbjct: 522 LNALQDLHPLPKIILEYRQIHKVKSTFVDGLLSCM--RKGFIAPTWNQTGTVSGRLSAKK 579 Query: 718 PNLQNI---PIKTDLGQ------------KIRRAFISPPTKKLISADYSQIELRILAHIA 762 PN+Q I PI+ Q R FIS ++AD+SQIELRILAH++ Sbjct: 580 PNIQGISKHPIQITKHQYEQGKEDEKTTVSPRTMFISSKGYTFLAADFSQIELRILAHLS 639 Query: 763 KITPLYQVFEN--SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQ 820 L ++F+ SLD+ + ++ G+ +E+V+ R K I +S++YG RLA Sbjct: 640 CDPELLKLFQEPESLDVFMSLTSQWKGIPLEQVTHVEREQTKRIVYSVVYGAGKERLAAC 699 Query: 821 LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIR 880 L + +++ +I+ + ++ IH++ ++T GYV +I GRR IN+ +R Sbjct: 700 LGVTSLQSSQFIESFLQKYKKIHDFTQETIMQCHHKGYVTSIMGRRRPLPNINAKDYRLR 759 Query: 881 NINERAAINAPIQGSAADITRRAMISVHKSL 911 ER A+N +QGSAAD+ + AMI + S+ Sbjct: 760 TQAERQAVNFVVQGSAADLCKIAMIRIFTSI 790 >gi|309801320|ref|ZP_07695449.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] gi|308222209|gb|EFO78492.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] Length = 221 Score = 178 bits (452), Expect = 3e-42, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 138/221 (62%), Gaps = 4/221 (1%) Query: 753 IELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGI 812 +ELRI+A ++ L + F + D H+ VA+ ++G+ +E+++ R H K +++ + YG+ Sbjct: 1 MELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAYGL 60 Query: 813 SPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEI 872 S + LA QL+I EA +YF F +HEY+E + R+ GY ETI+GRR ++ + Sbjct: 61 STYGLAQQLKISPKEAESLRNQYFATFGKVHEYLESLVSTAREKGYTETIYGRRRYFPGL 120 Query: 873 NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEV 932 SP ++R+ ERAA+NAPIQGSAADI + AMI SL D L ++++LQIHDELV E+ Sbjct: 121 KSPNRAVRDAAERAALNAPIQGSAADIMKIAMIRASDSLRDACLKSRIILQIHDELVVEI 180 Query: 933 PEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 E A+ ++ ++ME A + + VPL + + ++WQ Sbjct: 181 APGEAEQATALVRNAMEHA----VTMAVPLDASTGIGSDWQ 217 >gi|224117482|ref|XP_002317586.1| predicted protein [Populus trichocarpa] gi|222860651|gb|EEE98198.1| predicted protein [Populus trichocarpa] Length = 834 Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 160/309 (51%), Gaps = 27/309 (8%) Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 ++++ ++ RVH ++ +T TGRL++ PNLQN P KIR+AFI+ P LI AD Sbjct: 523 SNLSGKSGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 581 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS---------PQ---- 796 Y Q+ELR+LAH+A + F+ D H A ++ E + PQ Sbjct: 582 YGQLELRVLAHLANCKSMLDAFKAGGDFHSRTAVNMYPHIREAIEKKRVLLEWYPQPGED 641 Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 RR AK +NFSI YG +P L+ ++ +EA + + ++ + Sbjct: 642 KPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVL 701 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 ++ + K R++G V T+ GR + + SS+R ERAAIN P+QGSAAD+ A Sbjct: 702 KWQQARKKEAREDGRVHTLLGRARVFPSLTDASSSLRGHVERAAINTPVQGSAADVAMCA 761 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + K+ +L K+LLQ+HDE++ E P E A I+V M K K L+V L Sbjct: 762 MLEISKNNRLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFGGKNFLKVDLA 821 Query: 964 VNIKVSNNW 972 V+ K + NW Sbjct: 822 VDAKCAQNW 830 Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500 +++L FFE+ K+ HN +D V+ YGIS+ GF D M M+ + DS R Sbjct: 122 RDLLHEFAPFFESPDIKKVWHNYSFDNHVIENYGISVSGFHADTMHMARLWDSSR 176 >gi|225629756|ref|ZP_03787705.1| DNA polymerase I [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591390|gb|EEH12481.1| DNA polymerase I [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 261 Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 104/248 (41%), Positives = 153/248 (61%), Gaps = 8/248 (3%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 KE ++DG F++RA+Y P L G+P+ + GF NM+ K + +S +IA Sbjct: 2 KEKTFTIIDGYGFLFRAYYVLPHLITT-TGMPIGGVYGFLNMVLKYIAHSDYLTIA---- 56 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 D FR+ +YP+YKANR PE L PQ ++R A +AF + EI+G+EADDIIA Sbjct: 57 --LDAGKKNFRHNLYPEYKANRVTPPEDLTPQFTILREAVEAFNLSYEEIEGYEADDIIA 114 Query: 123 TYTY-IAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVC 181 T A + F V ++S+DKDL QL++ ++D +K ID + VI+K+G+ K++ Sbjct: 115 TLAAKYANHQDFKVVVVSSDKDLFQLLNHNILIFDPIKNIYIDEKQVIEKFGVNSHKLLD 174 Query: 182 LQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETAR 241 L +LTGD+ DNIPG+PGIG KTAA LL E+ +L NI+ N I+Q + R + E+ E A Sbjct: 175 LFSLTGDASDNIPGVPGIGPKTAAKLLDEFDSLNNIIENIDNIEQTRIRNILAEHKEKAL 234 Query: 242 LSRKLVML 249 +SR+L+ L Sbjct: 235 ISRELLSL 242 >gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Eubacterium rectale DSM 17629] Length = 724 Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 147/581 (25%), Positives = 264/581 (45%), Gaps = 69/581 (11%) Query: 456 FFENEHFLKIGHNIKYD-KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL 513 + N I HNIK+D K+V ++G + + D + +VL+ H + + K++ Sbjct: 144 YLANGSLKCINHNIKFDDKVVTFQWGQRIANVWWDTNIAGWVLNEN-EKHRLKPMYNKYI 202 Query: 514 --SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR----------PKLI 561 E IP + I + AI +N + W L + P+ Sbjct: 203 LNGEGSDEDFGDLFEGIPCNYIP---IDIFAIYGANDGFKTWALYQFQKKYLREDHPRAD 259 Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS------------- 608 KL HV+ ++ P+IDV ME+ G++I +D K++S + + + Sbjct: 260 YRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFNAEMAEKEKLCDEYVAKFD 319 Query: 609 --LEENIYDL----SGEKFNLSSPKQLGDILFTKLKF-------PSGAKTKTGQWKTTAQ 655 +EEN + +K N +SP+Q+ + + K P G K Q Sbjct: 320 KFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIFKLKSVSRKEPRGTGDKIVQQHRNKA 379 Query: 656 DLEQINCGDNPI--IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 G+ I + N +++ K+ TY D +P +T VHT Y+ TGR Sbjct: 380 KKAGTKKGEEFIQFLDNYQRYKECGKLLGTYIDKIPEVKCAKTNAVHTTYNQYGAKTGRF 439 Query: 714 ASLEP----NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 +S + NLQNIP + IR+ F + K + D+SQIE R+L++++ + + Sbjct: 440 SSSDTVTKINLQNIPSHE---KSIRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQE 496 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSP--------QMRRHAKTINFSIIYGISPFRLATQL 821 + D++ ++ ++++GV E +H +T S++ GI R A + Sbjct: 497 AYREGKDLYAIMGSKVYGVPYEDCREFYPDGTVNAEGKHRRTTMKSVLLGIMYERGAKAI 556 Query: 822 RIPRSEAADYIKR----YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 ++A++ ++ ++ FP I + K + + GYV TI GR+ E+ P Sbjct: 557 GEQFDKSAEWAQKLIDDFYKSFPKIQQLRLKVEKMAEEYGYVTTIQGRKRRLPEMQLPDH 616 Query: 878 SIRNINE--RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 E R ++NA IQGS+ADI + AMI+++ + L M++ +HDEL+ EVPE+ Sbjct: 617 DDYRYQEAHRQSLNAVIQGSSADIMKLAMIAIYNDPQYKALDCHMVITVHDELIMEVPED 676 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 I + ++V++M++ I+L P+ V+ +V++ W EN Sbjct: 677 HIKEGADLLVNTMKRVGHSLIDL--PMSVDAEVNDYWYGEN 715 >gi|119879523|ref|XP_615375.3| PREDICTED: DNA polymerase theta [Bos taurus] gi|297470916|ref|XP_002684835.1| PREDICTED: polymerase (DNA directed), theta-like [Bos taurus] gi|296491393|gb|DAA33456.1| polymerase (DNA directed), theta-like [Bos taurus] Length = 2593 Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 163/652 (25%), Positives = 280/652 (42%), Gaps = 133/652 (20%) Query: 447 KEILSYLKKFF----ENEHFLKIGHNIKYDKLVLHRYGISM-RGFEDIMLMSYVLDSGRS 501 K+ L +L+ F + E + I I+ K++L GIS+ + +ED + ++LD Sbjct: 1945 KDRLRHLQSCFHKESDKERSVIIYDFIQSYKILLLSCGISLEQSYEDPKVACWLLDPDSK 2004 Query: 502 SHDIASIAQKWLSYTR---KEILKSRK-SSIPIDKISDSQVQEHAIENSNVILQLWLLLR 557 + SI +L + +EI + S+ ++ + + A S +I L Sbjct: 2005 EPTLHSIVSHFLPHELPLLEEIETGQGIQSLGLNVSTTHSGRYRASVESILIFNSMNQLN 2064 Query: 558 PKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLS 617 L E L V+ +++ P ++ +E+ GI + + L ++E Y L+ Sbjct: 2065 SLLKKENLQDVFYKVEMPSQYCLALLELNGIGFSTAECESQKHIMQAKLDAIEMQAYQLA 2124 Query: 618 GEKFNLSSPKQLGDILFTKLKFP----------------------SGAKTKTGQWKTTAQ 655 G F+ +S + ++LF +LK P +G K + G+ +T++ Sbjct: 2125 GHSFSFTSSDDIAEVLFLELKLPPNGEGKNQGIKKTLGSTRRGNDNGRKLRLGKQFSTSK 2184 Query: 656 DLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSL--------AS 707 + +P+ ILEWR+++ + L +R +R++ F + + Sbjct: 2185 GVLNKLRALHPLPGLILEWRRITNAITKVVFPL-----QREKRLNPFLGMERIYPVSQSH 2239 Query: 708 TMTGRLASLEPNLQNI---------------PIKTDLGQ--------------------- 731 T TGR+ +EPN+QN+ P LG+ Sbjct: 2240 TATGRITFIEPNIQNVPRDFEIKMPAVVEESPPSQALGKGLLPMGRGGRKKDCAMNAGRQ 2299 Query: 732 ----------------KIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSL 775 +R AF+ +++ADYSQ+ELRILAH++ L QV Sbjct: 2300 TKVEERASDRGMPFSVSMRHAFVPFTGGLILAADYSQLELRILAHLSHDRRLIQVLNTGA 2359 Query: 776 DIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRY 835 D+ R +AAE + E V +R+ AK I + IIYG+ L Q+ I ++AA YI + Sbjct: 2360 DVFRSIAAEWKMIEPESVGDNLRQQAKQICYGIIYGMGAKSLGEQMGIKENDAACYIDSF 2419 Query: 836 FHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGS 895 R+ GI ++ +T +++G+V+TI GRR + I + ER AIN +QGS Sbjct: 2420 KSRYTGISHFMRETVKNCKRDGFVQTILGRRRYLPGIKDNNPYHKAHAERQAINTRVQGS 2479 Query: 896 AADITRRAMISVHKSLEDHKLATK---------------------------------MLL 922 AADI + A +++ K LE K +L Sbjct: 2480 AADIVKIATVNIQKQLETFHSTFKSHGHREGLLQSERTGLLPKKKLQGMFCPIRGGFFIL 2539 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 Q+HDEL++EV EE++ +QI+ + ME A I L V L+V +++ +W E Sbjct: 2540 QLHDELLYEVAEEDVVQVAQIVKNEMESA----IKLSVKLRVKVRIGASWGE 2587 >gi|237716863|ref|ZP_04547344.1| DNA polymerase I [Bacteroides sp. D1] gi|229442846|gb|EEO48637.1| DNA polymerase I [Bacteroides sp. D1] Length = 435 Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 107/295 (36%), Positives = 168/295 (56%), Gaps = 14/295 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYA---TPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M N LFL+D + IYRA+YA P ++ K G +AI GF N L ++L +KE+ Sbjct: 1 MDSSNKLFLLDAYALIYRAYYAFIKNPRINSK--GFNTSAILGFVNTLEEVL---KKEN- 54 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 +H V FD TFR+E + YKA R + PE + +P+++ +A+ IP +E+ G+EA Sbjct: 55 PTHIGVAFDPAGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIRAYRIPILEVAGYEA 114 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLY---DTVKEEKIDIEHVIKKWGI 174 DD+I T A ++G +++ DKD QLVS +Y T E + +E V K+ I Sbjct: 115 DDVIGTLATEAGRQGITTYMMTPDKDYGQLVSDKVFMYRPKHTGGFEVMGVEEVKAKFDI 174 Query: 175 -PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 P +++ + L GDS DNIPG PG+G KTA L+ E+G++EN+L + ++K + + + Sbjct: 175 QSPAQVIDMLGLMGDSSDNIPGCPGVGEKTAQKLISEFGSIENLLEHTDQLKGALKTK-V 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRV 288 E S+ L ++ DVPI + ++ L+ E+ + L S + LEF LI+RV Sbjct: 234 ETNREMITFSKFLATIKIDVPIQLEMDSLVREEADEDSLRSIFEELEFRTLIDRV 288 >gi|15487835|gb|AAL00966.1|AF401678_1 DNA polymerase I [Lactobacillus sakei] Length = 343 Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 105/291 (36%), Positives = 178/291 (61%), Gaps = 11/291 (3%) Query: 453 LKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIA-- 509 LK + E+ K +K ++ +R G+ + G + D++L SY+L++ +S+D+ ++A Sbjct: 49 LKDWLEDASHPKAVFGVKRTQVAANRLGVHLAGVDFDLLLASYLLNTTNNSNDLGTVANL 108 Query: 510 QKWLSYTRKEIL--KSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLH 567 ++ + E + K K ++P + + + +H ++ + I L L +L + Sbjct: 109 HEYQNVQTDEAVYGKGAKRAVPTEP---ALLYQHLVQKAAAIYHLQPQLEEQLKEHQQFD 165 Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 ++ ++ P+ V++QMEITGI++D L+Q+ +E S+ L LEE +Y +GE FN++SPK Sbjct: 166 LFTDMELPLALVLAQMEITGIRVDASRLQQMGSEFSQTLKILEEKVYAEAGETFNINSPK 225 Query: 628 QLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADS 687 QLG ILF K+ P KTKTG + T LEQ+ D PI++ IL++RQ++KI+STY + Sbjct: 226 QLGVILFEKMGLPVVKKTKTG-YSTAVDVLEQLRK-DAPIVQTILDYRQIAKIQSTYVEG 283 Query: 688 LPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 L I++ +VHT Y T TGRL+S++PNLQNIP++ G+KIR+AF+ Sbjct: 284 LLKSIHQDN-KVHTRYLQTLTQTGRLSSVDPNLQNIPVRLAEGRKIRQAFV 333 >gi|255563979|ref|XP_002522989.1| DNA polymerase I, putative [Ricinus communis] gi|223537801|gb|EEF39419.1| DNA polymerase I, putative [Ricinus communis] Length = 963 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 105/310 (33%), Positives = 161/310 (51%), Gaps = 28/310 (9%) Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 ++++ + RVH ++ +T TGRL++ PNLQN P KIR+AFI+ P LI AD Sbjct: 651 SNVSGKRGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 709 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ---- 796 Y Q+ELRILAH+A + + F+ D H A ++ G + + PQ Sbjct: 710 YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIHEAVDKGEVLLEWDPQPGEE 769 Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 RR AK +NFSI YG +P LA ++ EA + + ++ + Sbjct: 770 KPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLARDWKVSIEEAKETVNLWYRERQEVL 829 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 ++ E K R++G V T+ GR + I+ ++ + ERAAIN P+QGSAAD+ A Sbjct: 830 KWQEARKKEAREDGRVHTLLGRARVFPSISHASNAQKRHIERAAINTPVQGSAADVAMCA 889 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN-LRVPL 962 M+ + ++ +L K+LLQIHDE++ E P E A I++ M K +N L+V L Sbjct: 890 MLQISRNKRLKELGWKLLLQIHDEVILEGPTESAVVAKDIVIECMSKPFFNGVNILKVDL 949 Query: 963 KVNIKVSNNW 972 V+ K + NW Sbjct: 950 SVDAKCAENW 959 Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust. Identities = 53/249 (21%), Positives = 93/249 (37%), Gaps = 54/249 (21%) Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496 D G++ L K K FFEN K+ HN +DK V+ Y + + GF D M M+ + Sbjct: 255 DGGGRDLLVK-----FKPFFENPEIKKVWHNYSFDKHVIQNYEVPVCGFHADTMHMARLW 309 Query: 497 DSGRSSHD------------IASIAQKWLS-----YTRKEILKSRK-----------SSI 528 +S R + + S AQ + K I K + Sbjct: 310 NSSRRTEGGYSLEALTGDKRVMSGAQSCFEGLIGKVSMKTIFGKNKLKKDGSEGKMITVA 369 Query: 529 PIDKISDSQVQEHAIENSNVILQLWLL--------------LRPKLIVEKLLHVYERLDK 574 P++++ + + ++ + W L L K + + +L Y+ + Sbjct: 370 PVEELQREEREPWICYSALDAISTWQLYESLKRKLFHMPWNLNGKPVGKSMLDFYKEYWR 429 Query: 575 PMIDVVSQMEITGIQIDQDLLKQ------VSAEISKNLLSLEENIYDLSGEKFNLSSPKQ 628 P +++ +ME GI +D+ L + V EI+ N Y + N+ S Q Sbjct: 430 PFGELLVRMETEGILVDRAYLAEIEKVAKVEQEIAVNRFRNWACKYCPDAKYMNVGSDTQ 489 Query: 629 LGDILFTKL 637 L + F + Sbjct: 490 LRQLFFGGI 498 >gi|170056642|ref|XP_001864122.1| DNA polymerase theta [Culex quinquefasciatus] gi|167876219|gb|EDS39602.1| DNA polymerase theta [Culex quinquefasciatus] Length = 1177 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 122/416 (29%), Positives = 214/416 (51%), Gaps = 32/416 (7%) Query: 575 PMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL-SGEKFNLSSPKQLGDIL 633 P+ +++ME+ G D L + A + + E + L G K + S +++ +L Sbjct: 772 PIHVALARMELVGFPADGAKLGALIARLKAAKERIAERVRQLNGGRKLDFGSTREVAAVL 831 Query: 634 FTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHIN 693 K P K + G+ +T+ Q LE+I D+P+ ++ WR++ S + L I Sbjct: 832 ----KVP---KDRNGRARTSRQVLERI---DSPLAALVIAWRKIDSNLSRTIEPLGRGIV 881 Query: 694 KRTQRVHTFYSLASTMTGRLASLEPNLQNI----PIKTDLGQ----KIRRAFISPPTKK- 744 + + Y ST GR++ EPNLQ + ++ + G R F + K Sbjct: 882 GGRRIYGSSYCFTST--GRISMHEPNLQTVVKDFRVEIEPGTVEMFSCRGTFACEDSSKV 939 Query: 745 LISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK-VSPQMRRHAKT 803 LISAD+ Q+EL +L H+++ L V ++ D+ R +AA+ + E+ VS ++R + K Sbjct: 940 LISADFCQLELCVLTHLSQDRKLLAVMKSGKDVFRGIAAKWNHIEDEREVSDELRNYTKA 999 Query: 804 INFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIF 863 I + +IYG+ +A +L + A ++++ +P I Y EK R+ GY+ET+ Sbjct: 1000 IVYGVIYGMGARSMAAELNVDEDTARTLMEQFHATYPEIRRYAEKVVQVTRERGYIETLT 1059 Query: 864 GRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH--KLA---T 918 GRR + I+S S+ R+ ER A+ +QGSAADI + A++ + ++L + +LA Sbjct: 1060 GRRRYLPAIHSTDSTKRSEAERQAVCTTVQGSAADILKNAILRMARNLRKYRERLALGEV 1119 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +++L +HDEL+FE P ++ +I+ SME NL +PL+V +K +W E Sbjct: 1120 ELVLHMHDELIFEAPRDQARKVGKILKSSMENCA----NLSLPLRVKVKSGPSWGE 1171 >gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750] gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750] Length = 724 Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 146/581 (25%), Positives = 262/581 (45%), Gaps = 69/581 (11%) Query: 456 FFENEHFLKIGHNIKYD-KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL 513 + N I HNIK+D K+V ++G + + D + +VL+ H + + K++ Sbjct: 144 YLANGSLKCINHNIKFDDKVVTFQWGQRIANVWWDTNIAGWVLNEN-EKHGLKPMYNKYI 202 Query: 514 --SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLR----------PKLI 561 E IP + I + AI +N + W L + P+ Sbjct: 203 LNGEGSDEDFGDLFEGIPCNYIP---IDIFAIYGANDGFKTWALYQFQKKYLREDHPRAD 259 Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLS------------- 608 KL HV+ ++ P+IDV ME+ G++I +D K++S + + + Sbjct: 260 YRKLYHVFRDIEMPLIDVCMDMELRGVEIREDYAKELSVKFNAEMAEKEKLCDEYVAKFD 319 Query: 609 --LEENIYDL----SGEKFNLSSPKQLGDILFTKLKF-------PSGAKTKTGQWKTTAQ 655 +EEN + +K N +SP+Q+ + + K P G K Q Sbjct: 320 KFIEENPTLMRLTKGTKKINYNSPQQVACLFYDIFKLKSVSRKEPRGTGDKIVQQHRNKA 379 Query: 656 DLEQINCGDNPI--IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 G+ I + N +++ + TY D +P +T VHT Y+ TGR Sbjct: 380 KKAGTKKGEEFIQFLDNYQRYKECGNLLGTYIDKIPEVKCAKTNAVHTTYNQYGAKTGRF 439 Query: 714 ASLEP----NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 +S + NLQNIP + IR+ F + K + D+SQIE R+L++++ + + Sbjct: 440 SSSDTVTKINLQNIPSHE---KSIRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQE 496 Query: 770 VFENSLDIHRMVAAEIFGVNIEKVSP--------QMRRHAKTINFSIIYGISPFRLATQL 821 + D++ ++ ++++GV E +H +T S++ GI R A + Sbjct: 497 AYREGKDLYAIMGSKVYGVPYEDCREFYPDGTVNAEGKHRRTTMKSVLLGIMYERGAKAI 556 Query: 822 RIPRSEAADYIKR----YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 +A++ ++ ++ FP I + K + + GYV TI GR+ E+ P Sbjct: 557 GEQFDRSAEWAQKLIDDFYKSFPKIQQLRLKVEKMAEEYGYVTTIQGRKRRLPEMQLPDH 616 Query: 878 SIRNINE--RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEE 935 E R ++NA IQGS+ADI + AMI+++ + L M++ +HDEL+ EVPE+ Sbjct: 617 DDYRYQEAHRQSLNAVIQGSSADIMKLAMIAIYNDPQYKALDCHMVITVHDELIMEVPED 676 Query: 936 EITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 I + ++V++M++ I+L P+ V+ +V++ W EN Sbjct: 677 HIKEGADLLVNTMKRVGHSLIDL--PMSVDAEVNDYWYGEN 715 >gi|307106974|gb|EFN55218.1| hypothetical protein CHLNCDRAFT_52598 [Chlorella variabilis] Length = 2117 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 137/497 (27%), Positives = 222/497 (44%), Gaps = 101/497 (20%) Query: 551 QLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLE 610 ++W LLR +L ++LL R + P+ + + + + LE Sbjct: 1641 KMWQLLRSRLRGDELLPPLWRTEMPLEPM----------------------LQRRIEELE 1678 Query: 611 ENIYDLSGEKFNLSSPKQLGDILFTKLKF---PSGAKTKTGQWKTTAQDLEQINCGDNPI 667 + +G++F+LSSP+++ ILF LK P K+G + T + L +++ ++PI Sbjct: 1679 GMAHAEAGQEFSLSSPQEVSRILFEVLKLAPPPCAKDLKSGGYSTGQEVLLELH--EHPI 1736 Query: 668 IKNILEWRQLSKI--KSTYADSLPNHINKRTQRVHTFYSLASTMTG-------------- 711 + I E R+L + + LP + ++H Y+ A + G Sbjct: 1737 ARLIFEHRKLRTLLNRQGGPGLLPF---VQGFKMHLAYAEAVSYPGGLVLKRIRGSINQT 1793 Query: 712 -RLASLEPNLQNIP----------------------IKTDLGQKIRRAFISPPTKKLISA 748 RLA EPNLQ +P D +R AF++PP L+SA Sbjct: 1794 CRLAMDEPNLQCVPKPRAYKVLLTPGELGSAASGASAHADRTANLRAAFVAPPGCVLLSA 1853 Query: 749 DYSQIELRILAHIAKITPLYQVF-ENSLDIHRMVAAEIFGVNIEK-------------VS 794 DY QIE R++AH + L +VF E+ D R++AA+ G E+ V+ Sbjct: 1854 DYRQIEFRLMAHFSGDPGLARVFSEDGADPFRLLAAQWLGAPQEQARPRGWLGRGRRGVT 1913 Query: 795 PQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVR 854 Q R HAK + + ++YG+ +LA +L +EA +++ PGI + + R Sbjct: 1914 QQQRDHAKQLTYGLLYGMGAAKLADELGCSVAEARTAQEKFRASMPGIEAWQARVVAECR 1973 Query: 855 QNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE-- 912 + GYVET+ GRR + IN R ER A N QGSAAD+ + AM+++H L Sbjct: 1974 RLGYVETLAGRRRYLPNINCRDGRKRAAAERQAKNTVCQGSAADLAKAAMVAIHTRLAAW 2033 Query: 913 ---------------DHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKIN 957 A +++LQIHDE + EV E + ++++ ME + Sbjct: 2034 LALGSGGNCGCGGGPGGGPAARLVLQIHDEFLLEVAEPLLEPVARLVRDCME-GLASGVR 2092 Query: 958 LRVPLKVNIKVSNNWQE 974 LRVPL+V + +W E Sbjct: 2093 LRVPLRVRLAAGPSWGE 2109 >gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] Length = 583 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 152/542 (28%), Positives = 272/542 (50%), Gaps = 70/542 (12%) Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVL--DSGRSSHDIASIAQKWLSYTRKEI 520 +K+ N K+D L I D ML S +L G ++ ++AQ +L+ +++ Sbjct: 83 VKVFQNAKFDLQFLMALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHYLN---EDL 139 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 K ++S ++++SQ+ +A ++ ++L+L ++ P+++ L + E ++ + + Sbjct: 140 DKEEQTSNWQGELTESQIL-YAARDAEILLRLRKVMIPQILENHLTQIAE-IEFRCVKAM 197 Query: 581 SQMEITGIQID----QDLLKQVSAEISKNLLSL----EENIYDLS--GEKF----NLSSP 626 + +E GI +D Q+L ++ AE L L E + +S GE N S Sbjct: 198 AHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYVERPLMQMSLWGEDVAINQNFESQ 257 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 + + ++L P A K QDL +P++K +L +R+ +K S + Sbjct: 258 QFVLNVLHEH-GIPVAATAK--------QDLYPHR--RHPLVKTLLSYRKAAKSISAFLQ 306 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 I+ T R+H Y S +GR++ PN+Q IP ++ R F +PP +KLI Sbjct: 307 PFTPLIHPVTGRLHPRYGQISAWSGRMSCWNPNIQQIPRDSEF----RACFAAPPGRKLI 362 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 ADYSQIELR+ A I+ T + ++ D+H + A+ + IE++SPQ R+ AK +NF Sbjct: 363 LADYSQIELRVAAQISGDTRMISAYQQGEDLHLLTASLVAHKPIEEISPQERQAAKAVNF 422 Query: 807 SIIYGISPFRL---ATQ---LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 +I+G+ L A Q + + +A ++ +R+F + GIH + + K + + G Sbjct: 423 GLIFGMGAPGLQQYAQQNYGVEMSLEQATEFRERFFKAYTGIHRWHQSIKAHLPKEG--R 480 Query: 861 TIFGRR-IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-- 917 T+ GR+ ++Y++ P N P+QG+AADI ++A+ L +LA Sbjct: 481 TLAGRKFVYYEKAGLP----------GYYNTPVQGTAADIVKKAL-----GLLIERLAGT 525 Query: 918 -TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLRVPLKVNIKVSNNWQ 973 T ++ +HDE++ E P EE T + ++ +ME+A LPK VP KV++ VS +W Sbjct: 526 DTYIVGIVHDEILLESPAEEAHTMAALLKSTMEEAANAILPK----VPTKVDVLVSESWA 581 Query: 974 EE 975 E+ Sbjct: 582 EK 583 >gi|294890673|ref|XP_002773257.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983] gi|239878309|gb|EER05073.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983] Length = 643 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 143/531 (26%), Positives = 263/531 (49%), Gaps = 60/531 (11%) Query: 488 DIMLMSYVLDS--GRSSHDI---ASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHA 542 D+ +++++LDS G + +DI SI +S+ R S + S P + D + E + Sbjct: 122 DLAVLAWILDSAAGSACYDIDYLKSIYGNDMSHKRPREATSLQESHPWRMLVDHDLPESS 181 Query: 543 IENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEI 602 L + L R + + + +++ L P+ +++ M +TG D ++++ +++ Sbjct: 182 D------LAVALSSRVESHGQTAVALFQEL--PVARLLTLMSVTGAPFDHSIMQRWRSDL 233 Query: 603 SKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKF--PSGAKTKTGQWKTTAQDLEQI 660 + LE L ++ ++SP Q+ +L+ L P+G ++++ T ++ + Sbjct: 234 EVTVAKLEREAQALVKKEVLMTSPAQVAALLYDDLGLQPPAGRRSRS-----TGDEVLSM 288 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYAD---SLPNHINK-------RTQ------------- 697 +P++ I + RQ++K+ +TY D SLP K R Q Sbjct: 289 MVDQHPVVSIIRKHRQVAKLITTYVDTIRSLPESSPKPGLLEYFRPQNGVSESCNFLGKN 348 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNIPIK---TDLGQ-KIRRAFISP--PTKKLISADYS 751 R++T ++ T+TGRL+S PNLQNIP DLG +R+AFISP + L+S DY Sbjct: 349 RLYTVWNQTMTVTGRLSSSNPNLQNIPRSHEFEDLGVISLRKAFISPILDSHCLVSVDYR 408 Query: 752 QIELRILAHIAKITPLYQVFE-NSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIY 810 Q+E+R+LAH L + F + DI+ +AA I V+ + R AK +++Y Sbjct: 409 QVEIRVLAHFVGPGALRRSFSVDGADIYTNMAAMILRKAANDVTKEERNKAKVCCLALVY 468 Query: 811 GISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 G LA Q+ + + A + +++ + FP + ++ + + + YVETI RR Sbjct: 469 GSGIHLLARQMGVTTTVAQGFKRQFNYAFPELERWMVRVWHAAKGKKYVETICKRR---R 525 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT---KMLLQIHDE 927 +I + + +R IN+ IQGSAADI + AM+ + +L++ + ++LL IHDE Sbjct: 526 KIELDGGELTSEAKRFCINSIIQGSAADIMKSAMVQIAHALDEAQWKRGRPQLLLSIHDE 585 Query: 928 LVFEVPEEEITTASQIIVHSMEKACLPKIN----LRVPLKVNIKVSNNWQE 974 V +E++ ++++ M LP + VPL+V++K +NW + Sbjct: 586 FVLSCHQEDVERLGRLLLREMRNPALPGHDEDDPFSVPLEVSMKYGHNWAD 636 >gi|195952416|ref|YP_002120706.1| 5'-3' exonuclease [Hydrogenobaculum sp. Y04AAS1] gi|195932028|gb|ACG56728.1| 5'-3' exonuclease [Hydrogenobaculum sp. Y04AAS1] Length = 299 Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/249 (40%), Positives = 152/249 (61%), Gaps = 10/249 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 + ++++DGS+F+YR++YA P L + DG+ A GF L+ +L+ + E +FA+ Sbjct: 2 DTIYVLDGSAFLYRSYYALPSL-KTEDGVETGAFYGFIRALFSILKAKKPE----YFAIA 56 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD PA T R++IY +YKA R + P L+ Q+PL++ A GI +E +G EADDIIA Sbjct: 57 FDLPAPTVRDKIYKEYKATRKETPSELVSQIPLIKQAINLLGIRLLEKEGLEADDIIAYI 116 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLY-DTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + +++ +TI + DKDLMQLV + + + + D E VI+K+G+PP ++ Sbjct: 117 AHKSKEWNKNLTIYTPDKDLMQLVEDKKIIVINPITNKVFDEEAVIEKFGVPPSRLADYL 176 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARLS 243 AL GDS+DNI GI G+G K A LL++YG++ENIL N I QK +E E L+ Sbjct: 177 ALIGDSVDNIKGIKGVGPKKAVELLEKYGSIENILNNWDEI-QKTFKE---ASKEDLELA 232 Query: 244 RKLVMLRTD 252 KL+ L T+ Sbjct: 233 YKLIKLNTE 241 >gi|222629638|gb|EEE61770.1| hypothetical protein OsJ_16332 [Oryza sativa Japonica Group] Length = 885 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 154/309 (49%), Gaps = 27/309 (8%) Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 NHI+ R+H ++ +T TGRL++ PNLQN P KIR+AF++ P LI AD Sbjct: 574 NHISCDEGRIHCSLNI-NTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNSLIVAD 632 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV----SPQ---- 796 Y Q+ELRILAH+A + F+ D H A ++ V +KV PQ Sbjct: 633 YGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWHPQPGQE 692 Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 RR AK +NFSI YG +P LA ++ EA D +K ++ + Sbjct: 693 KPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYRDRKEVL 752 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 + K K ++ V T+ GR + + S R ERAAINAP+QGSAAD+ A Sbjct: 753 AWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAADVAMCA 812 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + ++ +L ++LLQ+HDE++ E P E A I+V M K L V L Sbjct: 813 MLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELA 872 Query: 964 VNIKVSNNW 972 V+ K + NW Sbjct: 873 VDAKCAQNW 881 Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500 +++L FFE+ K+ HN +D V+ YGI + GF D M ++ + DS R Sbjct: 191 RDVLMEFAPFFEDPSIRKVWHNYSFDSHVIENYGIKVAGFHADTMHLARLWDSSR 245 >gi|281204189|gb|EFA78385.1| DNA-directed DNA polymerase I [Polysphondylium pallidum PN500] Length = 1359 Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 132/450 (29%), Positives = 222/450 (49%), Gaps = 66/450 (14%) Query: 576 MIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKF------NLSSPKQL 629 ++ ++S+ME+ GI + + S+ NL + +N+ +F +LSSP Q+ Sbjct: 906 VVPILSKMELHGITFSPETFRTCSS----NLQTYVQNLQGKWNTEFKKDSAKSLSSPVQI 961 Query: 630 GDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLP 689 + L T+ K T + K T DL + D IK+ILE+R +KI +TY Sbjct: 962 KEFLLTQYKI-----TVSNTGKQTLVDLIK-KYPDVQYIKDILEYRHCNKILTTYVQPYL 1015 Query: 690 NHI-NKRTQRVHTFYSLASTMTGRLASLEPNLQNIP---------------------IKT 727 + + +++ +H + T TGRL+ +PNLQN+P I Sbjct: 1016 DIVKDEQAPSIHCQWIHTGTATGRLSCKQPNLQNLPRNALNVNYNDEDGDSELADFNIDE 1075 Query: 728 D-----------LGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 D + +R F + LI DYSQIELRI+ H +K L + F+N +D Sbjct: 1076 DEDDNMGANNQTISLNVRDGFEAREGYTLIGLDYSQIELRIMTHYSKDQKLEEYFKNEVD 1135 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYF 836 + + +A G ++KV+P R K I + I+YGI P L+ L++ + A+ +I + Sbjct: 1136 VFKHMAHHYLGKPVDKVTPTEREQTKRIIYGIMYGIGPHSLSQILKVSKERASQFINDFL 1195 Query: 837 HRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINS--PKSSIRNINERAAINAPIQG 894 ++F I YIE+ K +R +++TI GRR +NS P S R + R +N+ IQG Sbjct: 1196 NKFQSIRNYIEEEKKKIRLKKFIKTIAGRRRLLPHVNSQDPNQSHRAL--RQTVNSIIQG 1253 Query: 895 SAADITRRAMISVH----------KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 SA+DI + AM ++H KSL+ H ++LLQIHDEL++E+P+ + + Sbjct: 1254 SASDIIKEAMFNIHVYLSQLSKEYKSLDPHN-DPRLLLQIHDELIYEIPDAMLNDKESEV 1312 Query: 945 VHSMEK--ACLPKINLRVPLKVNIKVSNNW 972 ++++ + + +L VP+ V + +W Sbjct: 1313 CINIKRIMESVYQDDLTVPIAVTMSKGKSW 1342 >gi|296081899|emb|CBI20904.3| unnamed protein product [Vitis vinifera] Length = 2091 Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 131/441 (29%), Positives = 217/441 (49%), Gaps = 45/441 (10%) Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611 LW LL + E+L+ V R++ P++ +++ ME+ GI +D + Q + K L LE+ Sbjct: 1616 LWKLL----VSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQARNVLGKKLRHLEK 1671 Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670 Y+L+G F+L + + ++L+ LK P K Q +T + + ++PII Sbjct: 1672 EAYELAGMTFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIIPV 1731 Query: 671 ILEWRQLSKIKSTYADSLPN--HINKRTQR--VHTFYSLASTMTGRLASLEPNLQNIP-- 724 I E R L+K+ + S+ + ++ +TQR +H + ST TGRL+ EPNLQ + Sbjct: 1732 IKEHRTLAKLLNCTLGSICSLARLSLQTQRYTLHGHWLQTSTATGRLSMEEPNLQCVEHV 1791 Query: 725 --IKTDLGQKI------------RRAFISPPTKK--LISADYSQIELRILAHIAKITPLY 768 K G K R F P + L++ADYSQIELR++AH ++ + L Sbjct: 1792 VEFKMIKGNKDVCNSEADHYKINARDFFVPSQENWLLLTADYSQIELRLMAHFSRDSSLT 1851 Query: 769 QVFEN-SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSE 827 ++ D+ M+AA+ G V Q R K + + I+YG+ LA QL E Sbjct: 1852 ELLSKPHGDVFTMIAAKWTGKPESVVGYQEREQTKRLVYGILYGMGANTLAKQLECSLGE 1911 Query: 828 AADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAA 887 A + I+ + FPG+ ++ + + GYV+T+ GR+ +I S + R A Sbjct: 1912 AEEKIRSFRSSFPGVASWLHEAVACCCKKGYVKTLKGRKRFLSKIKFGTSKEKLKARRQA 1971 Query: 888 INAPIQGSAADITRRAMISVHKSLEDH-----------------KLATKMLLQIHDELVF 930 +N+ QGSAADI + AMI++H + + K +++LQ+HDELV Sbjct: 1972 VNSICQGSAADIIKIAMINIHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVL 2031 Query: 931 EVPEEEITTASQIIVHSMEKA 951 EV + A ++ +ME + Sbjct: 2032 EVDPSVMKEAGLLLKMTMENS 2052 >gi|167392000|ref|XP_001739984.1| DNA polymerase I [Entamoeba dispar SAW760] gi|165896117|gb|EDR23624.1| DNA polymerase I, putative [Entamoeba dispar SAW760] Length = 651 Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 118/363 (32%), Positives = 191/363 (52%), Gaps = 19/363 (5%) Query: 618 GEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQL 677 G+ NLSSP+Q+ L +++ G G K D + ++ +P K +LE+R++ Sbjct: 291 GKTINLSSPEQVKKEL---IRYNIGI---DGVKKKATTDKKILSQSGHPFAKLVLEYRKI 344 Query: 678 SKIKSTYADSLPNHINKRTQR--VHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKI-- 733 SK+ S + + K + T +S + TGR+ S PNLQ IP + Q+ Sbjct: 345 SKLLSGVIEQIRRCCIKTGDEYFIRTKWSQTAITTGRIQSKNPNLQQIPKQAFSLQQFVV 404 Query: 734 --RRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIE 791 R FI+ ++ DY+QIELRILA+ K L + F++++DIH+++AA N+ Sbjct: 405 IPRDLFITHNNNTFVAIDYNQIELRILANFTKDHHLIEFFKSNIDIHKLIAAHWLKKNVN 464 Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851 ++ RR AKTI + IYGI PF LA QL I E+ +++ + +FP ++ E+ Sbjct: 465 DITDGERRKAKTIVYGCIYGIGPFSLADQLHISLDESKTFLESFLDQFPSFKKWKEEIIT 524 Query: 852 FVRQNGYVETIFGRRIHYDEI--NSPKSSIRNINERAAINAPIQGSAADITRRAMISVHK 909 G+V TI RR + + +S K ++ ++R A+N+PIQG+AADI + MI + K Sbjct: 525 NASTTGFVHTINNRRRRINNLTDSSDKKTLAE-SKRIAVNSPIQGTAADIIKMCMIEIFK 583 Query: 910 SLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVS 969 + L ++LL IHDE+V EVP+ + + + ME + L VPL V ++ Sbjct: 584 KIHSTWLGVQLLLNIHDEIVLEVPDHLLDEVCVTLKYLMEHI----VQLEVPLVVTVETG 639 Query: 970 NNW 972 W Sbjct: 640 KKW 642 >gi|115460848|ref|NP_001054024.1| Os04g0637400 [Oryza sativa Japonica Group] gi|113565595|dbj|BAF15938.1| Os04g0637400 [Oryza sativa Japonica Group] Length = 560 Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 154/309 (49%), Gaps = 27/309 (8%) Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 NHI+ R+H ++ +T TGRL++ PNLQN P KIR+AF++ P LI AD Sbjct: 249 NHISCDEGRIHCSLNI-NTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNSLIVAD 307 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV----SPQ---- 796 Y Q+ELRILAH+A + F+ D H A ++ V +KV PQ Sbjct: 308 YGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWHPQPGQE 367 Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 RR AK +NFSI YG +P LA ++ EA D +K ++ + Sbjct: 368 KPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYRDRKEVL 427 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 + K K ++ V T+ GR + + S R ERAAINAP+QGSAAD+ A Sbjct: 428 AWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAADVAMCA 487 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + ++ +L ++LLQ+HDE++ E P E A I+V M K L V L Sbjct: 488 MLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELA 547 Query: 964 VNIKVSNNW 972 V+ K + NW Sbjct: 548 VDAKCAQNW 556 >gi|218195671|gb|EEC78098.1| hypothetical protein OsI_17597 [Oryza sativa Indica Group] Length = 1032 Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 154/309 (49%), Gaps = 27/309 (8%) Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 NHI+ R+H ++ +T TGRL++ PNLQN P KIR+AF++ P LI AD Sbjct: 721 NHISCDEGRIHCSLNI-NTETGRLSARTPNLQNQPALEKDRYKIRQAFVAAPGNSLIVAD 779 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV----SPQ---- 796 Y Q+ELRILAH+A + F+ D H A ++ V +KV PQ Sbjct: 780 YGQLELRILAHLASCKSMLDAFKAGGDFHSRTAMNMYQHIRDAVEEKKVLLEWHPQPGQE 839 Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 RR AK +NFSI YG +P LA ++ EA D +K ++ + Sbjct: 840 KPPVPLLKDAFGAERRKAKMLNFSIAYGKTPVGLARDWKVSVKEAKDTLKLWYRDRKEVL 899 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 + K K ++ V T+ GR + + S R ERAAINAP+QGSAAD+ A Sbjct: 900 AWQMKQKELAQEKCEVYTLLGRSRRFPNMAHATSGQRGHIERAAINAPVQGSAADVAMCA 959 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + ++ +L ++LLQ+HDE++ E P E A I+V M K L V L Sbjct: 960 MLEIDRNARLKELGWRLLLQVHDEVILEGPTESADLAKSIVVECMSKPFYGTNILNVELA 1019 Query: 964 VNIKVSNNW 972 V+ K + NW Sbjct: 1020 VDAKCAQNW 1028 Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500 +++L FFE+ K+ HN +D V+ YGI + GF D M ++ + DS R Sbjct: 338 RDVLMEFAPFFEDPSIRKVWHNYSFDSHVIENYGIKVAGFHADTMHLARLWDSSR 392 >gi|225430047|ref|XP_002281624.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 2100 Score = 174 bits (442), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 125/423 (29%), Positives = 210/423 (49%), Gaps = 46/423 (10%) Query: 552 LWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE 611 LW LL + E+L+ V R++ P++ +++ ME+ GI +D + Q + K L LE+ Sbjct: 1664 LWKLL----VSEELVEVLLRIEIPLVTILADMEVWGIGVDMEGCIQARNVLGKKLRHLEK 1719 Query: 612 NIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670 Y+L+G F+L + + ++L+ LK P K Q +T + + ++PII Sbjct: 1720 EAYELAGMTFSLYTAADIANVLYGHLKLPIPEGHNKGKQHPSTDKHCLDLLRHEHPIIPV 1779 Query: 671 ILEWRQLSKIKSTYADSLPN--HINKRTQR--VHTFYSLASTMTGRLASLEPNLQNIPIK 726 I E R L+K+ + S+ + ++ +TQR +H + ST TGRL+ EPNLQ + Sbjct: 1780 IKEHRTLAKLLNCTLGSICSLARLSLQTQRYTLHGHWLQTSTATGRLSMEEPNLQENWL- 1838 Query: 727 TDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS-LDIHRMVAAEI 785 L++ADYSQIELR++AH ++ + L ++ D+ M+AA+ Sbjct: 1839 ------------------LLTADYSQIELRLMAHFSRDSSLTELLSKPHGDVFTMIAAKW 1880 Query: 786 FGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 G V Q R K + + I+YG+ LA QL EA + I+ + FPG+ + Sbjct: 1881 TGKPESVVGYQEREQTKRLVYGILYGMGANTLAKQLECSLGEAEEKIRSFRSSFPGVASW 1940 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 + + + GYV+T+ GR+ +I S + R A+N+ QGSAADI + AMI Sbjct: 1941 LHEAVACCCKKGYVKTLKGRKRFLSKIKFGTSKEKLKARRQAVNSICQGSAADIIKIAMI 2000 Query: 906 SVHKSLEDH-----------------KLATKMLLQIHDELVFEVPEEEITTASQIIVHSM 948 ++H + + K +++LQ+HDELV EV + A ++ +M Sbjct: 2001 NIHSVIAEGVDEPNSSTELPAKFHMLKGRCRIILQVHDELVLEVDPSVMKEAGLLLKMTM 2060 Query: 949 EKA 951 E + Sbjct: 2061 ENS 2063 >gi|66817246|ref|XP_642487.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4] gi|60470570|gb|EAL68549.1| hypothetical protein DDB_G0277751 [Dictyostelium discoideum AX4] Length = 516 Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 133/484 (27%), Positives = 235/484 (48%), Gaps = 85/484 (17%) Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISK--NLLSLEENIYDLSGEKFNL 623 L ++ ++ ++ + + ME GI ++ + + ++ N L + + L G+ F+L Sbjct: 18 LFIFSEIEMKILPIFAMMEFVGIGFNEKICESGREKVQNKINYLEYKAKVL-LPGKVFSL 76 Query: 624 SSPKQLGDILFTKLKFPSGAKTKTGQ-------------------WKTTAQDLEQINCGD 664 SS + + +LF LK P K Q + T LE I+ Sbjct: 77 SSTEDISQLLFQDLKIPVPEIAKANQQYNGNKGGGGCGGGVRRQNYSTKGAVLEHIS-HH 135 Query: 665 NPIIKNILEWRQLSKIKSTYADSLPNH------INKRTQRVHTFYSLASTMTGRLASLEP 718 +P+ I+E R+L+ + Y D L + N R R+++ TGR++ P Sbjct: 136 HPLPGLIIEIRKLTHHITHYVDILGKYEYHSDRFNMR--RIYSTIQQTVVPTGRISMAFP 193 Query: 719 NLQNI---------PIKTDLGQK------------------------------------- 732 NLQNI P +TDL + Sbjct: 194 NLQNISHPIEFRVAPSETDLQSQDSIKSFQDEIHTFDYTNDQNFKNLLEIESRCSFTKVS 253 Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENS--LDIHRMVAAEIFGVNI 790 +R +F L+SADYSQ+ELRIL H +K L ++F S LD+ + +A ++ GV+ Sbjct: 254 LRNSFTCANGYVLLSADYSQLELRILTHYSKDPNLIEMFNYSRELDVFKCIAHQLSGVDY 313 Query: 791 EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTK 850 EKVS + R AK + + I+YG+ +A++L++ + +A ++R+ + + + +++E + Sbjct: 314 EKVSDEERNFAKHLVYGILYGMGINSIASELKVDKEKAKVQLERFKNTYRTLIDFLESIE 373 Query: 851 NFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN--ERAAINAPIQGSAADITRRAMISVH 908 + V + Y++T+FGR ++ I+ PK+ ++I +R A N+ QG+AADIT+ AMI++ Sbjct: 374 DRVFIDAYIKTLFGRIRNFSAIHDPKTLPKDIGKIKRGARNSVPQGTAADITKLAMINIQ 433 Query: 909 KSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKV 968 + + M+LQ+HDEL+FEVP +I +++II SME + L VPL + + + Sbjct: 434 SQFDQLSINVHMVLQLHDELLFEVPLTDIDQSAKIIKESMENV----VKLNVPLPIKMSI 489 Query: 969 SNNW 972 NW Sbjct: 490 GTNW 493 >gi|303267731|ref|ZP_07353545.1| DNA polymerase I [Streptococcus pneumoniae BS457] gi|302642736|gb|EFL73069.1| DNA polymerase I [Streptococcus pneumoniae BS457] Length = 255 Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 103/262 (39%), Positives = 144/262 (54%), Gaps = 17/262 (6%) Query: 9 LVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 ++DGSS +RAF+A L ++ D GL NAI GF ML LL+ SH Sbjct: 1 MIDGSSVAFRAFFA---LYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVE----PSHIL 53 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD TFR E+Y DYK R K P+ Q P +R GI ++ +EADDII Sbjct: 54 VAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLNHMGIRHYDLAQYEADDIIG 113 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEK 178 T +AE++GF +TI+S DKDL+QL T + + K E ++++++ G+ P + Sbjct: 114 TLDKLAEQDGFDITIVSGDKDLIQLTDEHTVVEISKKGVSEFEAFTPDYLMEEMGLTPAQ 173 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 + L+AL GD DNIPG+ +G KT LL E+G+LE I N +K K +EN++ E Sbjct: 174 FIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDKE 233 Query: 239 TARLSRKLVMLRTDVPITIPLE 260 A LS+ L + T PI I LE Sbjct: 234 QAFLSKTLATIDTKAPIAIGLE 255 >gi|330843207|ref|XP_003293552.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum] gi|325076115|gb|EGC29930.1| hypothetical protein DICPUDRAFT_158421 [Dictyostelium purpureum] Length = 1334 Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 172/640 (26%), Positives = 297/640 (46%), Gaps = 69/640 (10%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + H L+DG+ Y+ +AT S H G V + GF L K++ N + V Sbjct: 269 QKHTVLIDGTLMAYKV-HATGK-SLYHLGENVTILYGFIRSLLKVINNLNP---VDNIVV 323 Query: 64 IFD-YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 FD ++R E++P YK+ RP P+ +L Q + T + GI + GFE DD++A Sbjct: 324 CFDPKGGSSYRKEMFPQYKSQRPSTPQDVLEQFKKLPEITDSLGIKFAVMNGFECDDLLA 383 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCL 182 +Y A G VTI+S DKDL+QLV +Y+ + +D V K+GI P K+V L Sbjct: 384 SYARQACDRGDRVTIVSEDKDLLQLVRKNVSVYNVRTDTMMDESEVFNKYGIEPNKLVTL 443 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 Q+L GD +DNIPGIP IG KTA ++++YG L I+ N + Q K + I + + Sbjct: 444 QSLIGDKVDNIPGIPKIGPKTATEIIKQYGTLHEIIDNIEALPQ-KFIDPIKNSIDQLMV 502 Query: 243 SRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIEPV 302 S +LV L +V + IPL L + + + ++FL+ +F + N++ Y N E Sbjct: 503 SYQLVTLDENVDLEIPLSSLEFKPIDKTKFLNFLEKYQFNTIKNQL-RNYKLKFLNEEGQ 561 Query: 303 -VLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQY 361 L NT E IE + D K + S +++ +++ + +E +K Sbjct: 562 EELASNTREYS--KIEYDYVDDEHYKFEEMS--NEEINQLKPKNVTMVRDVETAKKAVAT 617 Query: 362 PINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS 421 + + + +T+ I ++K+ IG H + I +I D Sbjct: 618 LMQHKNKYHACDTETIAIDLKKVSPIG--------------HGRMICFSIYC--GPDVKF 661 Query: 422 FKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGI 481 F T L V D G+ L + K++FE+E LK+ HN +D+ + + + I Sbjct: 662 FDGNT---RLWVDVMDDINGEAVLQE-----FKEYFEDESILKVWHNYAFDRHIFYNHNI 713 Query: 482 SMRGF-EDIMLMSYVLDSGR---SSHDIASIAQKWLSYTR---KEILKSRKSSI------ 528 +++GF D + M+ + ++ R + + ++ ++ L+ T+ K++ +K Sbjct: 714 NVKGFGGDTLHMARLWNAARQNSGGYSLEALCRELLNKTKTPIKDLFGQKKIKANGEAGK 773 Query: 529 -----PIDKIS-DSQVQEHAIENSNVILQLWLLLRPKLIVE----------KLLHVYERL 572 P+ +I D + IE S++ +L LR L ++ + Y Sbjct: 774 AITIPPLQRIQRDRRSILDWIEYSSLDSELTWSLRENLHMKLEDMVWTQNSTMWDFYYLN 833 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612 +P ++++ME G++ID D LK + + K+ +EEN Sbjct: 834 WRPFGHLLTEMEQRGMKIDIDYLKNLESTAFKD---MEEN 870 Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/303 (32%), Positives = 152/303 (50%), Gaps = 26/303 (8%) Query: 695 RTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIE 754 + R+HT ++ +T TGRL+S +PNLQN P KIR+AF P LI ADY Q+E Sbjct: 1033 KNSRLHTSVNV-NTETGRLSSRKPNLQNQPALEKDRYKIRKAFTCEPGNTLIVADYGQLE 1091 Query: 755 LRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVN------------------IE 791 LR+LAHI + F+ D H A ++ V+ ++ Sbjct: 1092 LRLLAHITNCKSMISAFKVGGDFHSRTAMGMYPHVKEAVDKGEVLLEWDGDGEPPKPLLK 1151 Query: 792 KVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851 + RR AKT+NFSI YG + L+T + EA + + R++ P + + KT Sbjct: 1152 NIFASERRKAKTLNFSIAYGKTAHGLSTDWGVTLKEAQETLNRWYEDRPEVLVWQRKTIA 1211 Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911 + + T+ GR H +I++ ++N ERA+IN P+QG AADI +AM+ + + Sbjct: 1212 TAHSHKWTRTLMGRYRHLPDIDNSAKGMKNHAERASINTPLQGGAADIVMKAMLIIEDNK 1271 Query: 912 EDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNN 971 +L K+++QIHDEL+ E PEE A ++++ M L + L V+ + + Sbjct: 1272 RIKELGYKLIMQIHDELILEGPEENADEARGLVMNLMSNPLTTP--LLIDLVVDCRYAKT 1329 Query: 972 WQE 974 W E Sbjct: 1330 WYE 1332 >gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 532 Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 154/567 (27%), Positives = 274/567 (48%), Gaps = 60/567 (10%) Query: 425 ETIFIDLSVHTSQDSTGKNTL------------TKEILSYLKKFFENEHFLKIGHNIKYD 472 E F D + TGK L T + LK +++ +K+ HN K+D Sbjct: 5 EVFFFDTETDSLDFRTGKIKLIAFSKGLNEVVTTTSVDERLKSILNDKNIIKVFHNAKFD 64 Query: 473 KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532 G + + +LM+ VL G + ++A+K+L ++ KS + S D Sbjct: 65 VGFFQSKGYRVNNYHCTLLMAQVL--GEEKLSLKALAKKYLDV---DMDKSMQHS---DN 116 Query: 533 ISDSQV-QEH---AIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGI 588 ++++ QEH A+++ L+ L L+ LL VYER ++ + + +E GI Sbjct: 117 WQETEITQEHIDYAVKDVEHTRALYYKLLDLLVENNLLTVYER-ERRALPAIVMLESNGI 175 Query: 589 QIDQDLLKQVSAEISKNLLSLEENIYDLSGEK-FNLSSPKQLGD-ILFTKLKFPSGAKTK 646 ++ D + + + LE I DL K NL+SPKQL + I+ +K S + + Sbjct: 176 NMEFDKWNARLDDDRRLAVELEIRIKDLLNRKELNLNSPKQLVEAIVEYGIKLHSTSDDE 235 Query: 647 TGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 ++ ++ +IK I ++R+L TY + L I+ R+ + L Sbjct: 236 LAKY-----------SDEHEVIKLIRKYRRLQAKIKTYGEKLKKFIDN-DGRIRAHWRLI 283 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITP 766 + +GR++ P LQ +P + R F++ KLI +DYSQIELR+LA I+K Sbjct: 284 GSRSGRMSCNNPPLQAMPGNS------REFFVADEGYKLIGSDYSQIELRVLASISKDET 337 Query: 767 LYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRS 826 L F N +D+H A+ IF I+++S + R+ AK++NF I+YGI+ + + LR Sbjct: 338 LISYFNNGIDLHLGTASLIFKKPIDEISKEERQVAKSLNFGIVYGITAYGIQKNLRKSGV 397 Query: 827 EAA-DYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINER 885 + + + ++Y F ++ +++ ++ + + Y++T+ GRR + + Sbjct: 398 DTSLEEAEKYRIEFLNVYPKVKELQDSLLKADYIKTLGGRRWQGGSLTMTQR-------- 449 Query: 886 AAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIV 945 +N PIQGSAA+ + A+ + +E K + +++ IHDE++ EVPE+E A I+ Sbjct: 450 --LNLPIQGSAAEGLKEALALL---VERMKESWRLVAVIHDEILLEVPEDEAEEAKNILE 504 Query: 946 HSMEKACLPKINLRVPLKVNIKVSNNW 972 M + + I +P+ V+ VSNNW Sbjct: 505 SCMVEG-MKTIVKDIPIIVDSSVSNNW 530 >gi|225461738|ref|XP_002283388.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1034 Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 154/309 (49%), Gaps = 27/309 (8%) Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 I+ + R+H ++ +T TGRL++ PNLQN P KIR+AFI+ P LI AD Sbjct: 723 GEISGKNGRIHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 781 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS---------PQ---- 796 Y Q+ELRILAH+A + F+ D H A ++ E V PQ Sbjct: 782 YGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKREVLLEWHPQPGED 841 Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 RR AK +NFSI YG + LA ++ EA + ++R++ + Sbjct: 842 KPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARETVERWYKERKEVL 901 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 + EK K YV T+ GR + ++ +S R ERAAIN P+QGSAAD+ A Sbjct: 902 AWQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQRGHIERAAINTPVQGSAADVAMCA 961 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + ++ +L K+LLQ+HDE++ E P E A I+V MEK K L V L Sbjct: 962 MLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVECMEKPFDGKNILSVDLA 1021 Query: 964 VNIKVSNNW 972 V+ K + NW Sbjct: 1022 VDAKCAQNW 1030 >gi|302142870|emb|CBI20165.3| unnamed protein product [Vitis vinifera] Length = 1118 Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 154/309 (49%), Gaps = 27/309 (8%) Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 I+ + R+H ++ +T TGRL++ PNLQN P KIR+AFI+ P LI AD Sbjct: 807 GEISGKNGRIHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 865 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVS---------PQ---- 796 Y Q+ELRILAH+A + F+ D H A ++ E V PQ Sbjct: 866 YGQLELRILAHLANCKSMLNAFKAGGDFHSRTAMNMYPHIREAVEKREVLLEWHPQPGED 925 Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 RR AK +NFSI YG + LA ++ EA + ++R++ + Sbjct: 926 KPPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLARDWKVSVREARETVERWYKERKEVL 985 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 + EK K YV T+ GR + ++ +S R ERAAIN P+QGSAAD+ A Sbjct: 986 AWQEKRKKEATTLKYVCTLLGRARSFPSVHHATASQRGHIERAAINTPVQGSAADVAMCA 1045 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + ++ +L K+LLQ+HDE++ E P E A I+V MEK K L V L Sbjct: 1046 MLEISRNARLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVECMEKPFDGKNILSVDLA 1105 Query: 964 VNIKVSNNW 972 V+ K + NW Sbjct: 1106 VDAKCAQNW 1114 >gi|326426432|gb|EGD72002.1| hypothetical protein PTSG_00018 [Salpingoeca sp. ATCC 50818] Length = 830 Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 122/440 (27%), Positives = 219/440 (49%), Gaps = 48/440 (10%) Query: 568 VYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPK 627 +Y RL+ P I ++++M++ GI ID + LKQ +I + L LE L G K L+SP Sbjct: 400 LYSRLEAPAIWLLAEMQVHGIHIDTETLKQQRVQIQQCLAELEARAEALVGFKLLLTSPL 459 Query: 628 QLGDILFTKLKF----PSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEW-RQLSKIKS 682 QL + L+ +L+ P+ +T G+ T L I D + N+L R+ +++ Sbjct: 460 QLREYLYDQLQLHVGIPNFPRTPKGKLSTGEDALTLIK--DRHELPNLLLLHRRAARLLC 517 Query: 683 TYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD------LGQKIRRA 736 TY D + H+ +H + S +GR++ +PN+Q++P++ L R A Sbjct: 518 TYIDGVLPHVTHGM--LHPEWLQTSAASGRVSCQQPNIQSVPLRETALRLDLLVVSPRAA 575 Query: 737 FISPPTKKLISADYSQIELRILAHIAKITPLYQVFEN----------------------- 773 +++P +S D+ Q+ELR+LAH ++ L +F+N Sbjct: 576 YVAPGGCVYVSLDWRQMELRLLAHFSEDEGLIALFQNQEAKAKANTPPSTANATSREEGG 635 Query: 774 SLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIK 833 + D + +A++ F V +E+V+ + R K ++ IYG L+ L + EA ++ Sbjct: 636 TSDPFKALASKWFCVPVEQVTGRQRDQVKRCLYAFIYGSGALHLSKVLEVSVHEAKKLLQ 695 Query: 834 RYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQ 893 + R P I ++ +++ G+V + RR ++ K S + ++RAA N +Q Sbjct: 696 AFRRRHPRIQHLRDQVLIRLKETGFVSCLSRRRRYF------KDSANDHSQRAAFNFLLQ 749 Query: 894 GSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA-C 952 GSAADI + AMI++ + L ++ + M+ Q+HDE++ E PE+E A +++ + A C Sbjct: 750 GSAADICKAAMINLREFLRAKQMRSFMVAQLHDEIILECPEKE---AKEVLAFTRGPAFC 806 Query: 953 LPKINLRVPLKVNIKVSNNW 972 P +RVP V ++ W Sbjct: 807 EPFGRMRVPFPVRQRIGRTW 826 >gi|220936133|ref|YP_002515032.1| 5'-3' exonuclease [Thioalkalivibrio sp. HL-EbGR7] gi|219997443|gb|ACL74045.1| 5'-3' exonuclease [Thioalkalivibrio sp. HL-EbGR7] Length = 332 Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 94/260 (36%), Positives = 145/260 (55%), Gaps = 15/260 (5%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 + + L+LVD S +++RA++ P +G P NA+ GF L +LL A+ Sbjct: 6 RASPLWLVDSSIYVFRAWFTLPEAITDREGHPANAVTGFGEFLVRLLTR------AAPAP 59 Query: 63 VIFDYP---AVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 V+F + ++R+EIYP+YKANRP PE L Q R A G PA +EADD Sbjct: 60 VVFAFDESLGQSYRHEIYPEYKANRPPAPESLKRQFRQCRALVTALGFPAFSSPRYEADD 119 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKM 179 II T T + G +V +I+ DKDL QLV P ++ ++ ++D V KK G+ PE++ Sbjct: 120 IIGTLTARQQAAGGSVHLITADKDLTQLVGPGDLWWEFQQDRRLDARGVEKKLGVRPEQV 179 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASR-----IKQKKRRENIL 234 AL GD +DNIPG+PGIG TAA +L+ +G+L+ + + I+ +R +++ Sbjct: 180 ADQLALAGDKVDNIPGVPGIGMATAARILRRFGDLDTLFADTDEVAKLHIRGARRLADLV 239 Query: 235 -EYAETARLSRKLVMLRTDV 253 E+ + RLSR+L + D+ Sbjct: 240 REHEHSVRLSRRLTGIHCDI 259 >gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] Length = 575 Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 153/537 (28%), Positives = 258/537 (48%), Gaps = 60/537 (11%) Query: 465 IGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSR 524 +GHN+K+D L+RY I D M+ S +L + H + S+A +L + KS Sbjct: 73 VGHNLKFDLKYLYRYHIEPYAVFDTMVASQLL-AELDRHSLQSVAMHYLGQV---LDKSL 128 Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL----IVEKLL------HVYERLDK 574 + S ++ E+A + V+ L+ +L KL + E++L V+ L Sbjct: 129 QLSDWGSRVLTKAQLEYAALDVVVVRDLFPILLEKLNQCPVREEILLKTRTSRVFG-LQN 187 Query: 575 PM-------IDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYD-LSGEKFNLSSP 626 P+ + V+++E+ G+ +D L+ V E S+ + + I D +S + + SP Sbjct: 188 PVAIVEMAFVQEVAKLELNGLPVDTQELESVFREYSRKV---QRMIMDFISTHRVDPMSP 244 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 KQLG+ L +L KT+ G T + L + +P++++ILE R KI D Sbjct: 245 KQLGEFLTRRLGLDL-PKTEKGNVSTDDKALSE--HAHHPVVRHILEIRASKKI----LD 297 Query: 687 SLPN-HINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKL 745 L N R RV+ + +TGR+AS PN+QNIP + +RR F + Sbjct: 298 KLEEIRENLRGNRVYPEFKQIGAVTGRMASSNPNVQNIP------KDLRRIFKAEEGNLF 351 Query: 746 ISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTIN 805 + AD+SQIELRI A + + F+ D+HR A+ + G E ++ + R+ AK +N Sbjct: 352 VIADFSQIELRIAAEYVGEIRMIRAFQEGRDLHRYTASILLGKREEDITKEERQLAKAVN 411 Query: 806 FSIIYGISPFRLAT-----QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYV- 859 F +IYGIS L+ + +P EA +R+F F G ++ + K +++ G Sbjct: 412 FGLIYGISAKGLSQYAATYGIDLPVEEAQAIRERFFSYFEGFRDWHNRVKEELKKTGKSS 471 Query: 860 -ETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLAT 918 T+ GR Y P A+N PIQG+ AD+ + A++ + L + Sbjct: 472 GHTLLGR--SYVAHTFPD----------AVNYPIQGTGADLLKLAVLMLDAELRKEGIPA 519 Query: 919 KMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975 K++ +HDE+V E P+E ++ +M++A I RVP++V + V W++E Sbjct: 520 KVVNLVHDEIVLECPQEVAQEVQTLLERAMKRAG-SIILKRVPVEVEVTVKERWEKE 575 >gi|313895591|ref|ZP_07829147.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975717|gb|EFR41176.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 642 Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 156/582 (26%), Positives = 256/582 (43%), Gaps = 71/582 (12%) Query: 441 GKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSG 499 G N +L N H K+ HNI ++ + + GI ++ D + + + + Sbjct: 74 GANIDRTAFFLFLADLLANPHITKVAHNIAFESSMAYARGIVIQPPVYDTIAAAQM--TS 131 Query: 500 RSSHDIASIAQKWLSYTRKEILKSRKSSIP----------IDKI--SDSQVQEHAIENSN 547 RS+++ + + L + E+L+ S+P D++ D + + +++ Sbjct: 132 RSAYEFRRLNESGLKHLAGELLEE---SLPTFAETTGGKHFDELPAQDKETVRYGAADAD 188 Query: 548 VILQL------WL---LLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQV 598 L+L W L R + IVE ++ P + M+ G+ IDQ L+++ Sbjct: 189 FSLRLYHTFNGWFDRYLPRHRWIVE-------HMESPTAIYLGVMKNNGVPIDQSLMQKR 241 Query: 599 SAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDI---LFTKLKFPSGAKTKTGQWKTTAQ 655 AE + + + I L G+ N+ + D LF P T Q Sbjct: 242 KAESEMEMERIRQEITFLIGD-VNIGANCSTADFKKYLFESQGLPVLKVTNKSQ--AALD 298 Query: 656 DLEQINCGDN---------PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLA 706 D+ + G+ P+ K + E+R+ KI+STY D +N T+R+H Sbjct: 299 DMAMVLLGEWCEEHKPELVPLFKLVQEYRRWGKIQSTYIDGYLKFLNPVTKRLHPDIFAL 358 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI-SADYSQIELRILAHIAKIT 765 ST TGR+ +PN QN+P K++ +R FI P+ LI S D+SQIELR+ A + Sbjct: 359 STDTGRMNCRKPNCQNMPRKSNDPIGVRN-FIKAPSGHLILSLDFSQIELRVGAFYCRDE 417 Query: 766 PLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRH-------AKTINFSIIYGISP---- 814 + + + DIH IFGV E+ + R AK +NF YG+ P Sbjct: 418 RMMETYRAGGDIHAATTCVIFGVTDEEAQDKHRADYKERRTIAKNVNFGTFYGLFPRGLQ 477 Query: 815 ----FRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYD 870 F+ + +P E+ I + + + E+TK + Y ET GRR + Sbjct: 478 NTLKFKAGVEKTLPECESV--IANLKAGYRELSTWQEETKVQAARRLYSETWLGRRRYLP 535 Query: 871 EINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVF 930 +I S + + ++ ER A+N PIQG+AADI + A++ + K L D K +LQIHDEL F Sbjct: 536 DIRSKEWARKSFAERCALNTPIQGTAADILKLAIVRILKGLPDRPW-LKPILQIHDELTF 594 Query: 931 EVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 +P + A I ME+ P+ +L PL N+ Sbjct: 595 IIPAGRLDEAVAFIRACMEEQPFPEFDL--PLIAKASAGENF 634 >gi|157111398|ref|XP_001651546.1| DNA polymerase theta [Aedes aegypti] gi|108878374|gb|EAT42599.1| DNA polymerase theta [Aedes aegypti] Length = 1987 Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 119/428 (27%), Positives = 218/428 (50%), Gaps = 32/428 (7%) Query: 563 EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDL-SGEKF 621 +++L + + + P+ +++ME+ G D + L + + + E + L G + Sbjct: 1570 QEMLPTFVQREMPIHGALARMELVGFPADANKLAHLIERLKVAQERISERVRTLNGGRRL 1629 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 N +S ++ LK P + + G+ KT Q LE+I D+P+ ++ +R++ Sbjct: 1630 NFASTSEVA----AALKVP---RERNGRVKTCRQVLEKI---DSPLATLVIAYRKIESNL 1679 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNI----PIKTDLGQ----KI 733 S + L I + +R++ S T TGR++ EPNLQ + ++ D G Sbjct: 1680 SRTIEPLYRAI-RDGKRIYG-NSYCFTSTGRISMHEPNLQTVVKDFKVEIDPGHVEVFSC 1737 Query: 734 RRAF-ISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792 R F S P + L+SAD+ Q+EL +L H+++ L V D+ R +AA+ + E Sbjct: 1738 RSTFACSSPDRILLSADFCQLELCVLTHLSQDRKLLAVMNGGKDVFRGIAAKWNRIEDEA 1797 Query: 793 -VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKN 851 VS ++R + K I + +IYG+ +A +L + A ++++ +P I Y +K Sbjct: 1798 LVSDELRNYTKAIVYGVIYGMGAKSMAAELNVDEDMACTLMEQFHSTYPEIRRYADKVIQ 1857 Query: 852 FVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL 911 R+ GY+ET+ GRR + I+S R+ ER A+ +QGSAADI + A++ + ++L Sbjct: 1858 VTRERGYIETLTGRRRYLPAIHSTDMKKRSEAERQAVCTTVQGSAADILKNAILRMMRNL 1917 Query: 912 EDHKLATK-----MLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 ++ + ++L +HDEL+FEVP ++ ++I+ SME L +PL+V + Sbjct: 1918 RKYRQTLRLGQVELVLHMHDELIFEVPRDQSRKVAKILKSSMENCA----KLSLPLRVKV 1973 Query: 967 KVSNNWQE 974 K+ +W E Sbjct: 1974 KMGASWGE 1981 >gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51] gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 578 Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 150/542 (27%), Positives = 270/542 (49%), Gaps = 70/542 (12%) Query: 463 LKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVL--DSGRSSHDIASIAQKWLSYTRKEI 520 +KI N K+D L I D ML S +L G ++ ++AQ +L+ +++ Sbjct: 78 IKIFQNAKFDLQFLMALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHYLN---EDL 134 Query: 521 LKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVV 580 K ++S ++++SQ+ +A ++ ++L+L ++ P+++ L + ++ + + Sbjct: 135 DKEEQTSNWQGELTESQIL-YAARDAEILLRLRKVMIPQILENHLTQI-AGIEFRCVKAM 192 Query: 581 SQMEITGIQID----QDLLKQVSAEISKNLLSL----EENIYDLS--GEKF----NLSSP 626 + +E GI +D Q+L ++ AE L L E + +S GE N S Sbjct: 193 AHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYVERPLMQMSLWGEDVAINQNFESQ 252 Query: 627 KQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYAD 686 + + ++L P A K QDL +P++K +L +R+ +K S + Sbjct: 253 QFVLNVLHEH-GIPVAATAK--------QDLYPYR--RHPLVKTLLSYRKAAKSISAFLQ 301 Query: 687 SLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLI 746 I+ T R+H Y S +GR++ PN+Q IP ++ R F +PP +KLI Sbjct: 302 PFTPLIHPVTGRLHPRYGQISAWSGRMSCWNPNIQQIPRDSEF----RACFAAPPGRKLI 357 Query: 747 SADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINF 806 ADYSQIELR+ A I+ T + ++ D+H + A+ + I +++PQ R+ AK +NF Sbjct: 358 LADYSQIELRVAAQISGDTRMISAYQQGEDLHLLTASLVAHKPIAEITPQERQAAKAVNF 417 Query: 807 SIIYGISPFRL---ATQ---LRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 +I+G+ L A Q + + +A ++ +R+F + GIH + + K + + G Sbjct: 418 GLIFGMGAPGLQQYAQQNYGVEMSLEQATEFRERFFKAYTGIHRWHQSIKAHLPKEG--R 475 Query: 861 TIFGRR-IHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLA-- 917 T+ GR+ ++Y++ P N P+QG+AADI ++A+ L +LA Sbjct: 476 TLAGRKFVYYEKAGLP----------GYYNTPVQGTAADIVKKAL-----GLLIERLAGT 520 Query: 918 -TKMLLQIHDELVFEVPEEEITTASQIIVHSMEKAC---LPKINLRVPLKVNIKVSNNWQ 973 T ++ +HDE++ E P EE T + ++ +ME+A LPK VP KV++ VS +W Sbjct: 521 DTYIVGIVHDEILLESPAEEAHTMAALLKSTMEEAANAILPK----VPTKVDVLVSESWA 576 Query: 974 EE 975 E+ Sbjct: 577 EK 578 >gi|60117328|gb|AAX14432.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila mojavensis] Length = 276 Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 114/294 (38%), Positives = 167/294 (56%), Gaps = 26/294 (8%) Query: 487 EDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENS 546 +D+M+MSY LD+G+ H I +I LS EI S K+ I I + Sbjct: 3 DDLMIMSYSLDTGKHDHSIPNIVAHNLS-ENAEIF-SAKTLIAIHE-------------- 46 Query: 547 NVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL 606 L+ +L EKL +YER DKP++ V+ ME GI ++ L+++S + + + Sbjct: 47 --------KLKQRLFQEKLFTIYERFDKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVI 98 Query: 607 LSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQD-LEQINCGDN 665 LE+ IY+L+GE+FN++SPKQL D+LF K+ K+K +T + LE + Sbjct: 99 AVLEDEIYNLAGERFNIASPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEGV 158 Query: 666 PIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPI 725 I IL WR LSK+K TY D+L ++ R+HT +S +T TGRL+S PNLQNIPI Sbjct: 159 EIASKILNWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATATGRLSSSNPNLQNIPI 218 Query: 726 KTDLGQKIRRAFISPPTKKLISADYSQIELRILA-HIAKITPLYQVFENSLDIH 778 +++ G IR+AFI+P K+ISADYSQIEL+ L + L ++F +IH Sbjct: 219 RSEEGNLIRQAFIAPKGHKIISADYSQIELKPLGTRCQRCHHLKKLFATKQEIH 272 >gi|145629928|ref|ZP_01785710.1| DNA polymerase I [Haemophilus influenzae R3021] gi|144984209|gb|EDJ91632.1| DNA polymerase I [Haemophilus influenzae R3021] Length = 255 Score = 171 bits (434), Expect = 4e-40, Method: Composition-based stats. Identities = 102/248 (41%), Positives = 142/248 (57%), Gaps = 11/248 (4%) Query: 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVI 64 N L LVDGSS++YRAF+A P L+ G P A+ G NML L+ + SH AV+ Sbjct: 7 NPLVLVDGSSYLYRAFHAFPPLTNAA-GEPTGAMYGVLNMLKSLISQVQ----PSHIAVV 61 Query: 65 FDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATY 124 FD TFR+E++ YK++RP +P+ L Q+ + +A GIP + ++G EADD+I T Sbjct: 62 FDAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTL 121 Query: 125 TYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQA 184 A + G V I + DKD+ QLV L +T+ +D E VI+K+GIPPE ++ A Sbjct: 122 ALQASRLGKKVLISTGDKDMAQLVDDNIMLINTMNNSLLDREGVIEKYGIPPELIIDYLA 181 Query: 185 LTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYAE 238 L GDS DNIPG+ G+G KTA LLQ G++ I N ++ + KK E +L Sbjct: 182 LMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGAKKLGEKLLAEKP 241 Query: 239 TARLSRKL 246 A LS L Sbjct: 242 NADLSYTL 249 >gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA] gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei] Length = 1808 Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 139/542 (25%), Positives = 274/542 (50%), Gaps = 43/542 (7%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502 N IL L+K +E+ +KI N K+D L ++ D + S +LD ++ Sbjct: 1294 NITNNNILDGLRKILNDENIVKIIQNGKFDTKFLLYNNFNITNIFDTYIASKLLDKNKNM 1353 Query: 503 HD--IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 + + +I +K+LS + K +++S+ + + ++ +A +S+ +L+L+ L ++ Sbjct: 1354 YGFKLNNIVEKYLSVY---LDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQI 1410 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY--DLSG 618 E + + ++ I + ME+ GI++D + L + + +I N L++E + +L Sbjct: 1411 KAENM-QIVNDIENKCILPICDMELNGIKVDLENLNKSTDQIL-NELNVERDKLKKELKN 1468 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 E N++S +Q+ K + + + + D N ++ + + +R+L Sbjct: 1469 EDINVNSQQQI-----LKALQDNNVRDLSNKLIDNTSDANLKNFINHNAVILLRNYRKLY 1523 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 K+ S + LP HINK+T ++HT ++ T +GR +S +PNLQ IP + + IR FI Sbjct: 1524 KLYSAFYLKLPLHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQ----KNIREIFI 1579 Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 I AD+ QIEL+I A I + + + N++D+H + A+ I I +++ + R Sbjct: 1580 PTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGINEINKEDR 1639 Query: 799 RHAKTINFSIIYGISPFRLAT------QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852 AK INF ++YG++ L T +++ + + +F + G+ + N Sbjct: 1640 HVAKAINFGLLYGMNYVNLRTYANTYYNVKMNLDQCLYFYNSFFEHYKGLSRW----HNI 1695 Query: 853 VRQNGYVE--TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910 V+Q +E T+ R++ + + K A+N P+QG+ ADI + A++ ++K+ Sbjct: 1696 VKQTKALEYSTLSNRKVVFPYFSFTK----------ALNYPVQGTCADILKLALVELYKN 1745 Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970 L + K++L +HDE++ EV ++ A +I+V SME + + +V +V+IK++ Sbjct: 1746 L--RHINGKIILCVHDEIIIEVDKKHQEEALRILVESMENSASFFLK-KVKCEVSIKIAQ 1802 Query: 971 NW 972 NW Sbjct: 1803 NW 1804 >gi|11994141|dbj|BAB01162.1| unnamed protein product [Arabidopsis thaliana] Length = 1088 Score = 171 bits (434), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 158/309 (51%), Gaps = 29/309 (9%) Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 ++++ + RVH ++ +T TGRL++ PNLQN P KIR+AFI+ P LI AD Sbjct: 690 SNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIASPGNSLIVAD 748 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ---- 796 Y Q+ELRILAH+A + + F D H A ++ G + + PQ Sbjct: 749 YGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQE 808 Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 RR AK +NFSI YG + L+ ++ R EA D + +++ + Sbjct: 809 KPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVR 868 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 ++ E K Q GYV T+ GR + E S + +N ERAAIN P+QGSAAD+ A Sbjct: 869 KWQELRKKEAIQKGYVLTLLGRARKFPEYRS--RAQKNHIERAAINTPVQGSAADVAMCA 926 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + + +L K+LLQ+HDE++ E P E A I+V+ M + K L V L Sbjct: 927 MLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLS 986 Query: 964 VNIKVSNNW 972 V+ K + NW Sbjct: 987 VDAKCAQNW 995 Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust. Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 47/206 (22%) Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496 D G+N ++IL+ K FFE+ K+ HN +D ++ YGI + GF D M M+ + Sbjct: 279 DVLGENG--RDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNYGIKLSGFHGDTMHMARLW 336 Query: 497 DSGR---SSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDKI-SDSQVQEHAIENSNVIL 550 DS R + + ++ K L T + I + KI ++++ E VI+ Sbjct: 337 DSSRRISGGYSLEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVII 396 Query: 551 -----------QLWL--------------------------LLRPKLIVEK-LLHVYERL 572 + W+ L KLI +K + Y+ Sbjct: 397 PPVKELQMEDREAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEY 456 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQV 598 +P +++++ME G+ +D+D L Q+ Sbjct: 457 WQPFGELLAKMESEGMLVDRDYLAQI 482 >gi|76880150|dbj|BAE45850.1| DNA polymerase [Nicotiana tabacum] Length = 1152 Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 104/307 (33%), Positives = 155/307 (50%), Gaps = 27/307 (8%) Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 ++ R+H ++ +T TGRL++ PNLQN P KIR+AF++ LI ADY Sbjct: 843 VSGENGRIHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFVAAQGNSLIVADYG 901 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ------ 796 Q+ELRILAH+A + F+ D H A ++ G + + PQ Sbjct: 902 QLELRILAHLANCKSMLDAFKAGGDFHSRTAMNMYTHIREAVENGRVLLEWHPQPGEEKP 961 Query: 797 -----------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 RR AK +NFSI YG + LA ++ EA + + R++ + ++ Sbjct: 962 PVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLARDWKVSVKEAKETVDRWYRDRKEVSDW 1021 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 E+ K R+ V T+ GR + + + S++ ERAAIN P+QGSAAD+ AM+ Sbjct: 1022 QEQRKFEAREFRRVHTLLGRARWFPSVKNATGSVKGHIERAAINTPVQGSAADVAMCAML 1081 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 + K+ +L K+LLQ+HDE++ E PEE A I+V M K K LRV L V+ Sbjct: 1082 EISKNARLEELGWKLLLQVHDEVILEGPEESENEAMAIVVDCMSKPFGGKNILRVDLSVD 1141 Query: 966 IKVSNNW 972 K + NW Sbjct: 1142 SKCAKNW 1148 Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 12/99 (12%) Query: 403 HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHF 462 H + I +I + + D K I++D+ D GKN L + FF++ Sbjct: 406 HGEIICFSIYSGPEADFGDGK-SCIWVDV-----LDGDGKNLLVE-----FAPFFQDPSI 454 Query: 463 LKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVLDSGR 500 K+ HN +D V+ YG + GF D M M+ + DS R Sbjct: 455 RKVWHNYSFDNHVIENYGFKVSGFHADTMHMARLWDSSR 493 >gi|51893817|ref|YP_076508.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] gi|51857506|dbj|BAD41664.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] Length = 283 Score = 171 bits (433), Expect = 5e-40, Method: Composition-based stats. Identities = 99/254 (38%), Positives = 144/254 (56%), Gaps = 11/254 (4%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFD 66 + LVDG ++R F+A P ++ G PVNA+ GF +ML +LL R SH AV D Sbjct: 1 MLLVDGG-LMFRTFFALPPMTDPK-GRPVNAVYGFVSMLLRLLATLR----PSHVAVAAD 54 Query: 67 YPAVTFRNEI-YPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 P R + YP YKANRP+ P L PQ L+R A I + ++G+EADD++ T Sbjct: 55 SPVAENRRAVLYPPYKANRPECPPDLAPQFALLREVLAALNITVVGVRGYEADDLMGTMA 114 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKI---DIEHVIKKWGIPPEKMVCL 182 +AE EG V +++ D+D QL+S T + + + D+ + +WGI P ++ L Sbjct: 115 RMAEAEGMEVILLTGDRDAFQLLSGRTAVQYVKRLNQTITYDVARFVTEWGILPSQLADL 174 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 + L GD+ DNIPGI GIG KTA LLQ+Y LE +L +A + K R+ + E E A L Sbjct: 175 KGLAGDASDNIPGIRGIGPKTAVRLLQQYVTLEAVLAHA-HAQPGKLRQRLEEGREIALL 233 Query: 243 SRKLVMLRTDVPIT 256 S++L + VP++ Sbjct: 234 SKRLATIDRHVPVS 247 >gi|42565057|ref|NP_188690.3| POLGAMMA1 (polymerase gamma 1); 3'-5' exonuclease/ DNA binding / DNA-directed DNA polymerase/ nucleic acid binding [Arabidopsis thaliana] gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis thaliana] gi|71013474|dbj|BAE10874.1| PolI-like B DNA polymerase [Arabidopsis thaliana] gi|110741933|dbj|BAE98907.1| putative DNA polymerase [Arabidopsis thaliana] gi|332642871|gb|AEE76392.1| polymerase gamma 1 [Arabidopsis thaliana] Length = 1034 Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 158/309 (51%), Gaps = 29/309 (9%) Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 ++++ + RVH ++ +T TGRL++ PNLQN P KIR+AFI+ P LI AD Sbjct: 725 SNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIASPGNSLIVAD 783 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ---- 796 Y Q+ELRILAH+A + + F D H A ++ G + + PQ Sbjct: 784 YGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQE 843 Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 RR AK +NFSI YG + L+ ++ R EA D + +++ + Sbjct: 844 KPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVR 903 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 ++ E K Q GYV T+ GR + E S + +N ERAAIN P+QGSAAD+ A Sbjct: 904 KWQELRKKEAIQKGYVLTLLGRARKFPEYRS--RAQKNHIERAAINTPVQGSAADVAMCA 961 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + + +L K+LLQ+HDE++ E P E A I+V+ M + K L V L Sbjct: 962 MLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLS 1021 Query: 964 VNIKVSNNW 972 V+ K + NW Sbjct: 1022 VDAKCAQNW 1030 Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust. Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 47/206 (22%) Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496 D G+N ++IL+ K FFE+ K+ HN +D ++ YGI + GF D M M+ + Sbjct: 314 DVLGENG--RDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNYGIKLSGFHGDTMHMARLW 371 Query: 497 DSGR---SSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDKI-SDSQVQEHAIENSNVIL 550 DS R + + ++ K L T + I + KI ++++ E VI+ Sbjct: 372 DSSRRISGGYSLEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVII 431 Query: 551 -----------QLWL--------------------------LLRPKLIVEK-LLHVYERL 572 + W+ L KLI +K + Y+ Sbjct: 432 PPVKELQMEDREAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEY 491 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQV 598 +P +++++ME G+ +D+D L Q+ Sbjct: 492 WQPFGELLAKMESEGMLVDRDYLAQI 517 >gi|332642872|gb|AEE76393.1| polymerase gamma 1 [Arabidopsis thaliana] Length = 1049 Score = 171 bits (433), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 158/309 (51%), Gaps = 29/309 (9%) Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 ++++ + RVH ++ +T TGRL++ PNLQN P KIR+AFI+ P LI AD Sbjct: 740 SNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIASPGNSLIVAD 798 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ---- 796 Y Q+ELRILAH+A + + F D H A ++ G + + PQ Sbjct: 799 YGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQE 858 Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 RR AK +NFSI YG + L+ ++ R EA D + +++ + Sbjct: 859 KPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVR 918 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 ++ E K Q GYV T+ GR + E S + +N ERAAIN P+QGSAAD+ A Sbjct: 919 KWQELRKKEAIQKGYVLTLLGRARKFPEYRS--RAQKNHIERAAINTPVQGSAADVAMCA 976 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + + +L K+LLQ+HDE++ E P E A I+V+ M + K L V L Sbjct: 977 MLEISNNQRLKELGWKLLLQVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLS 1036 Query: 964 VNIKVSNNW 972 V+ K + NW Sbjct: 1037 VDAKCAQNW 1045 Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust. Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 47/206 (22%) Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496 D G+N ++IL+ K FFE+ K+ HN +D ++ YGI + GF D M M+ + Sbjct: 329 DVLGENG--RDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNYGIKLSGFHGDTMHMARLW 386 Query: 497 DSGR---SSHDIASIAQ--KWLSYTRKEILKSRKSSIPIDKI-SDSQVQEHAIENSNVIL 550 DS R + + ++ K L T + I + KI ++++ E VI+ Sbjct: 387 DSSRRISGGYSLEALTSDPKVLGGTETKEEAELFGKISMKKIFGKGKLKKDGSEGKLVII 446 Query: 551 -----------QLWL--------------------------LLRPKLIVEK-LLHVYERL 572 + W+ L KLI +K + Y+ Sbjct: 447 PPVKELQMEDREAWISYSALDSISTLKLYESMKKQLQAKKWFLDGKLISKKNMFDFYQEY 506 Query: 573 DKPMIDVVSQMEITGIQIDQDLLKQV 598 +P +++++ME G+ +D+D L Q+ Sbjct: 507 WQPFGELLAKMESEGMLVDRDYLAQI 532 >gi|74221544|dbj|BAE21491.1| unnamed protein product [Mus musculus] Length = 822 Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 136/476 (28%), Positives = 233/476 (48%), Gaps = 75/476 (15%) Query: 525 KSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQME 584 K S + S + + ++ N ++ L + L KL L ++ L+ P+I +++ ME Sbjct: 381 KPSSTFREASRNTLSQNVFMNLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVME 440 Query: 585 ITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAK 644 I +D++ +++ SA + L LE+ + ++GE+F + S QL +ILF KLK ++ Sbjct: 441 NHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQ 500 Query: 645 TK----TG---QWKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQ 697 K TG Q T+ L + +P+ K ILE+RQ+ KIKST+ D L ++ K + Sbjct: 501 RKHLPRTGLQNQLSTSEAMLNSLQ-DLHPLPKLILEYRQVHKIKSTFIDGLLAYMKKGS- 558 Query: 698 RVHTFYSLASTMTGRLASLEPNLQNI---PIKTDLGQKI------------RRAFISPPT 742 + + ++ T+TGRL++ PN+Q I PIK R F+S Sbjct: 559 -ISSTWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEG 617 Query: 743 KKLISADYSQIELRILAHIAKITPLYQVFENSL--DIHRMVAAEIFGVNIEKVSPQMRRH 800 ++AD+SQIELRILAH++ L ++F+ S D+ + ++ + IE+V+ R Sbjct: 618 HTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQ 677 Query: 801 AKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 K + +S++YG GYV Sbjct: 678 TKKVVYSVVYGA--------------------------------------------GYVT 693 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDH-KLATK 919 +I GRR I + +R ER A+N +QGSAAD+ + AMI + ++ L + Sbjct: 694 SILGRRRPLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTAR 753 Query: 920 MLLQIHDELVFEVPEEEITTASQI---IVHSMEKACLPKINLRVPLKVNIKVSNNW 972 ++ QIHDEL+FEV + ++ + + I+ S+++ ++ L+VPLKVN+ V +W Sbjct: 754 LVAQIHDELLFEVEDTQVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 809 >gi|307177771|gb|EFN66768.1| ATP-dependent DNA helicase HEL308 [Camponotus floridanus] Length = 1821 Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 97/299 (32%), Positives = 159/299 (53%), Gaps = 34/299 (11%) Query: 704 SLASTMTGRLASLEPNLQNIPIKTDLGQK-----IRRAFISPPTKKLISADYSQIELRIL 758 S+ T+TGR++ EPNLQN+P +R AF+ ++SADY Q+ELR+L Sbjct: 1519 SITCTVTGRVSMHEPNLQNVPKDFSFADNNFVLSVRMAFVPALGNIMLSADYCQLELRLL 1578 Query: 759 AHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 H ++ + L ++ DI + +AA+ V+ E+V+ +MR+ K + + +IYG+ LA Sbjct: 1579 THFSQDSILCEIMRQPGDIFKSIAAKWNNVSEEEVTIEMRQRTKQLCYGMIYGMGVKSLA 1638 Query: 819 TQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSS 878 L I SEA ++++ + +PGI++++ ++ Y+ T+ GRR + ++ S KSS Sbjct: 1639 ENLCISESEAQEFLESFMSTYPGIYKWLNNVLEEAHRDVYITTLLGRRRQFPDLKSTKSS 1698 Query: 879 IRNINERAAINAPIQGSAADITRRAMISVHK-------------------------SLED 913 R ER A+N +QGSAADI ++AMIS+ + S + Sbjct: 1699 TRAQAERQAVNTKVQGSAADIVKKAMISIEERIRCNFPDSAIIFPEMNNTRKLRSNSRDM 1758 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + ++LQ+HDEL++EV ++ + II SME C L VPL V I+V W Sbjct: 1759 QQRGGYLVLQLHDELLYEVNLADLKEVAAIIRESMENVC----QLTVPLPVKIRVGPAW 1813 >gi|308805154|ref|XP_003079889.1| DNA polymerase type I (ISS) [Ostreococcus tauri] gi|116058346|emb|CAL53535.1| DNA polymerase type I (ISS) [Ostreococcus tauri] Length = 322 Score = 171 bits (432), Expect = 8e-40, Method: Composition-based stats. Identities = 110/284 (38%), Positives = 151/284 (53%), Gaps = 30/284 (10%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQN--SRKESIAS 59 ++ HL LVDG SF++RA+Y +R + NA ++L+ S E + Sbjct: 12 ERTEHLILVDGLSFVFRAYYGWN--ARGNGEGLTNASGEDTSVLYSYAHTICSLLEMRPT 69 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H AV D TFR+E++ DYKANRP PE LL +P V + G+P + + G EADD Sbjct: 70 HLAVCMDAKGKTFRHEMFVDYKANRPPTPEPLLEVIPKVEQLVRDMGVPVLRLSGVEADD 129 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-------------E 166 II T + A GF V+I S DKD QL+ P T + K K D Sbjct: 130 IIGTVSRRASDAGFRVSICSPDKDFYQLLGPRTSMLKPNKSNKGDPFVPFTEEDFRAMHN 189 Query: 167 HVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ 226 HVI+ P + + AL GDS DNIPG+ G+G KTA LL EYG ++ L NAS++K Sbjct: 190 HVIE-----PAQFIDYLALVGDSSDNIPGVEGVGPKTALALLGEYGTIDAALANASKVKG 244 Query: 227 KKRRENILEY--AETARLSRKLVMLRTDVPIT------IPLEHL 262 K+ RE++L A +A LSRKLV +R ++ + +PLE L Sbjct: 245 KRARESLLSEKGAASAALSRKLVEIRQNLTVPSLNEPLLPLESL 288 >gi|254445605|ref|ZP_05059081.1| 5'-3' exonuclease, N-terminal resolvase-like domain family [Verrucomicrobiae bacterium DG1235] gi|198259913|gb|EDY84221.1| 5'-3' exonuclease, N-terminal resolvase-like domain family [Verrucomicrobiae bacterium DG1235] Length = 300 Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 96/249 (38%), Positives = 142/249 (57%), Gaps = 14/249 (5%) Query: 8 FLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDY 67 L+DG + +RAFYA L R+ DG P NA+ G+ +WKL Q+ +K A + V FD Sbjct: 9 LLIDGFNMAFRAFYAVKEL-RRSDGFPTNALYGWVRSMWKL-QDDQK---ADYVTVFFDL 63 Query: 68 PAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT-- 125 + + P+YKANR + PE Q+P+++ T+A G IE+ G E+DD++A Y Sbjct: 64 GGAQEKLALLPEYKANRGETPEDFEKQIPIIKQLTKAMGFGHIELDGVESDDLLAAYATR 123 Query: 126 YIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWGIPPEK 178 +A++E V I+S DKD Q V+ P + ++D V +KWG+PPEK Sbjct: 124 LVAKEEDAIVKIVSADKDFAQSVTDRIHLLLPPPTANPRLGWRELDPAGVEEKWGLPPEK 183 Query: 179 MVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAE 238 MV +L GD+ DNIPG+PG G KTA L EYG++ +L NA+ IK + RE + E Sbjct: 184 MVDYLSLIGDTSDNIPGVPGCGPKTAVKWLTEYGDINGVLANAADIKPPRFRELLPTLEE 243 Query: 239 TARLSRKLV 247 ++RK++ Sbjct: 244 RMDINRKII 252 >gi|309805210|ref|ZP_07699262.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV 09V1-c] gi|308165444|gb|EFO67675.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV 09V1-c] Length = 446 Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L ++ D GL NAI F NML LL+N + +H Sbjct: 4 LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD +TFRN++Y DYK R K P L QLP+++ GI + E+ +EADDI Sbjct: 57 MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 + T + GF VTI++ D+DL QL + T K+ D+E H+ + +G+ Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++AL GD+ DN PG+ +G KTA+ L+ +YG++EN+ +IK K +E ++ Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A L +KL + P+ + ++ + L+ +L SF + L F K ++ + + D Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295 >gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii] Length = 1813 Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 137/542 (25%), Positives = 274/542 (50%), Gaps = 43/542 (7%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFEDIMLMSYVLDSGRSS 502 N IL L+K +E+ +KI N K+D L ++ D + S +LD ++ Sbjct: 1299 NITNNNILDGLRKILNDENIVKIIQNGKFDTKFLLYNNFNITNIFDTYIASKLLDKNKNM 1358 Query: 503 HD--IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKL 560 + + +I +K+LS + K +++S+ + + ++ +A +S+ +L+L+ L ++ Sbjct: 1359 YGFKLNNIVEKYLSVY---LDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQI 1415 Query: 561 IVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIY--DLSG 618 E + + ++ I + ME+ GI++D + L + + +I N L++E + +L Sbjct: 1416 TAENM-QIVNDIENKCILPICDMELNGIKVDLESLNKSTDQIL-NELNVERDKLKKELKN 1473 Query: 619 EKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLS 678 + N++S +Q+ K + + + + D N ++ + + +R+L Sbjct: 1474 DDINVNSQQQI-----LKALQDNNVRDLSNKLIDNTSDANLKNFINHNAVILLRNYRKLY 1528 Query: 679 KIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFI 738 K+ S + LP HINK+T ++HT ++ T +GR +S +PNLQ IP + + IR FI Sbjct: 1529 KLYSAFYLKLPLHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQ----KNIREIFI 1584 Query: 739 SPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMR 798 I AD+ QIEL+I A I + + + N++D+H + A+ I I +++ + R Sbjct: 1585 PTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGINEINKEDR 1644 Query: 799 RHAKTINFSIIYGISPFRLAT------QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852 AK INF ++YG++ L T +++ + + +F + G+ + N Sbjct: 1645 HVAKAINFGLLYGMNYVNLRTYANTYYNVKMNLDQCLYFYNSFFEHYKGLSRW----HNS 1700 Query: 853 VRQNGYVE--TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKS 910 V+Q +E T+ R++ + + K A+N P+QG+ ADI + A++ ++K+ Sbjct: 1701 VKQTKALEYSTLSNRKVVFPYFSFTK----------ALNYPVQGTCADILKLALVELYKN 1750 Query: 911 LEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSN 970 L + K++L +HDE++ EV ++ A +I+V SME + + +V +V++K++ Sbjct: 1751 L--RHINGKIILCVHDEIIIEVDKKHQEEALKILVESMENSASFFLK-KVKCEVSVKIAE 1807 Query: 971 NW 972 NW Sbjct: 1808 NW 1809 >gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] Length = 662 Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 175/691 (25%), Positives = 314/691 (45%), Gaps = 125/691 (18%) Query: 351 FLERLQK-LSQYPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAI 409 LE+ K L+ YP N Y I + + + +++LET I T +D S+ I Sbjct: 31 LLEKYSKNLTPYP--NADYKIIKDDESLVTALKELETHTVVGLDIETTGLDPHTSEISLI 88 Query: 410 AISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNI 469 I+ ++ I I+ T ++S L++F E+ K+GHN+ Sbjct: 89 QIAAPNRP--------VILIEFRSITHKES-------------LRRFIEHHKIPKVGHNL 127 Query: 470 KYDKLVLHRY-GIS--MRGFEDIMLMSYVLDSG--------------------------- 499 ++ L ++ GI+ + D MLM+ +L +G Sbjct: 128 AFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDDIKAGVLPIPNLNQSIKNKK 187 Query: 500 ----------RSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVI 549 S+ + +A + L Y+ + L+ P+ + Q+Q +A ++ V+ Sbjct: 188 KLKQELNRNLPGSYSLMRVAARELGYSLDKSLQVSDWGKPL---TQEQLQ-YAANDAAVV 243 Query: 550 LQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQD----LLKQV------S 599 L L R K+I +L + ++ + V+QM + G+ +D D L K++ + Sbjct: 244 LPLRDTFRSKIIENQLADAIQ-VELGALARVAQMGLMGMGLDLDRWGELAKEIETRREDA 302 Query: 600 AEISKNLLSLEENIYDLSGEK--FNLSSPKQLGDILFTKLKFPSGAKTKTG-QWKTTAQD 656 A+I+ +L + +L G + NL S +Q+ A + G +T++D Sbjct: 303 AKIACEVLKPDHAQLNLFGGEASINLDSNEQV-----------IAALARLGIHTNSTSKD 351 Query: 657 LEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASL 716 ++P + I+E+R SK S++ + LP +N T R+H + +GR + Sbjct: 352 TLDKLSENHPEVFTIIEYRHWSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAASGRFSFS 411 Query: 717 EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLD 776 PNLQ IP + ++ R F+ KLI ADYSQIELRI A IA + + + N D Sbjct: 412 NPNLQQIPRE----RQYRSCFVPASGYKLIIADYSQIELRIAAEIANDSVMIDAYCNEKD 467 Query: 777 IHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI----------PRS 826 +HR+ AA + G +++V+ Q R+ K +NF +IYG+ AT+LRI Sbjct: 468 LHRLTAALVSGKPLDEVTKQERQLGKAVNFGLIYGMG----ATKLRIYAETNYGVKMSIE 523 Query: 827 EAADYIKRYFHRFPGIHEYIEKTKNFVRQNGY--VETIFGRRIHYDEINSPKSSIRNINE 884 EA + +F +PG+H++ + T +R + T+ GR + + P +S+ Sbjct: 524 EAQRFRDNFFKGYPGLHQWHQDTAFKLRTTKVKDIRTLSGRLRRWKD-EPPLTSL----- 577 Query: 885 RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQII 944 +N P+QG++ADIT+ A+ ++ L++ L ++ +HDE+V EVPE + S ++ Sbjct: 578 ---LNTPVQGTSADITKLALHKLNTDLDE--LGGFPIVVVHDEIVLEVPEVHVAEGSTML 632 Query: 945 VHSMEKACLPKINLRVPLKVNIKVSNNWQEE 975 +M A + VP+ V +++ W E+ Sbjct: 633 EEAMISAG-KRFLKSVPVVVEATIADTWAEK 662 >gi|76880152|dbj|BAE45851.1| DNA polymerase [Nicotiana tabacum] Length = 1152 Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 104/307 (33%), Positives = 155/307 (50%), Gaps = 27/307 (8%) Query: 692 INKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYS 751 ++ R+H ++ +T TGRL++ PNLQN P KIR+AF++ LI ADY Sbjct: 843 VSGENGRIHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFVAAQGNSLIVADYG 901 Query: 752 QIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ------ 796 Q+ELRILAH+A + F+ D H A ++ G + + PQ Sbjct: 902 QLELRILAHLANRKSMLDAFKAGGDFHSRTAMNMYTHIREAVENGEVLLEWHPQPGEEKP 961 Query: 797 -----------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEY 845 RR AK +NFSI YG + LA ++ EA + + R++ + ++ Sbjct: 962 PVPLLKDAFGSERRKAKMLNFSIAYGKTTIGLARDWKVSVKEAKETVDRWYSDRKEVSDW 1021 Query: 846 IEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMI 905 E+ K R+ V T+ GR + + + S++ ERAAIN P+QGSAAD+ AM+ Sbjct: 1022 QEQRKFEAREFRRVHTLLGRARWFPSVKNATGSVKGHIERAAINTPVQGSAADVAMCAML 1081 Query: 906 SVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVN 965 + K+ +L K+LLQ+HDE++ E PEE A I+V M K K LRV L V+ Sbjct: 1082 EISKNARLEELGWKLLLQVHDEVILEGPEESENEAMAIVVDCMSKPFGGKNILRVDLSVD 1141 Query: 966 IKVSNNW 972 K + NW Sbjct: 1142 SKCAKNW 1148 Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%) Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496 D GKN L + FF++ K+ HN +D V+ YG + GF D M M+ + Sbjct: 435 DGGGKNLLVE-----FAPFFQDPSIRKVWHNYSFDNHVIENYGFKVSGFHADTMHMARLW 489 Query: 497 DSGR 500 DS R Sbjct: 490 DSSR 493 >gi|212695717|ref|ZP_03303845.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM 7454] gi|212677390|gb|EEB36997.1| hypothetical protein ANHYDRO_00237 [Anaerococcus hydrogenalis DSM 7454] Length = 210 Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 85/211 (40%), Positives = 135/211 (63%), Gaps = 4/211 (1%) Query: 764 ITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRI 823 I + + F + +DIH A+E+F I++V+ R AK +NF IIYGIS + L+ L I Sbjct: 2 IKKMQEAFSHDIDIHTKTASEVFDTPIDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNI 61 Query: 824 PRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNIN 883 PR A +YI+ Y + +P I +Y++ ++ G+V TIF RR + EINS ++R+ Sbjct: 62 PRKRAKEYIENYLNTYPQIKKYMKDIVKKAKEEGFVNTIFNRRRYVPEINSKNFNVRSFG 121 Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER A+N PIQGSAADI + AMI+ +++L+ K+ K++LQIHDE++ E ++++T A +I Sbjct: 122 ERVALNTPIQGSAADIIKFAMINSYENLKKAKVDAKIVLQIHDEIIIEASKKDLTKAKEI 181 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 + SME+A + L+VPL V+I ++ E Sbjct: 182 LKSSMEEA----VKLKVPLLVDIDSGDSMYE 208 >gi|297830744|ref|XP_002883254.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata] gi|297329094|gb|EFH59513.1| POLGAMMA1 [Arabidopsis lyrata subsp. lyrata] Length = 1044 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 158/309 (51%), Gaps = 29/309 (9%) Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 ++++ + RVH ++ +T TGRL++ PNLQN P KIR+AFI+ P LI AD Sbjct: 735 SNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIASPGNSLIVAD 793 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ---- 796 Y Q+ELRILAH+A + + F D H A ++ G + + PQ Sbjct: 794 YGQLELRILAHLASCKSMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQE 853 Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 RR AK +NFSI YG + L+ ++ EA D + +++ + Sbjct: 854 KPPVPLLKDAFASERRKAKMLNFSIAYGKTAIGLSRDWKVSIEEAQDTVNLWYNDRQEVR 913 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 ++ E K QNGYV T+ GR + S + +N ERAAIN P+QGSAAD+ A Sbjct: 914 KWQELRKKEAIQNGYVLTLLGRARKFPVYRS--RAQKNHIERAAINTPVQGSAADVAMCA 971 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + K+ +L K+LLQIHDE++ E P E A I+V+ M + K L V L Sbjct: 972 MLEISKNQRLKELGWKLLLQIHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLS 1031 Query: 964 VNIKVSNNW 972 V+ K + NW Sbjct: 1032 VDAKCAQNW 1040 Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%) Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496 D G+N ++IL+ K FFE+ K+ HN +D ++ YGI + GF D M M+ + Sbjct: 324 DVLGENG--RDILAEFKPFFEDSSIKKVWHNYSFDNHIIRNYGIKLSGFHGDTMHMARLW 381 Query: 497 DSGR 500 DS R Sbjct: 382 DSSR 385 >gi|326633006|ref|YP_004306595.1| DNA polymerase [Enterobacteria phage SPC35] gi|321272200|gb|ADW80092.1| DNA polymerase [Enterobacteria phage SPC35] Length = 855 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 147/570 (25%), Positives = 270/570 (47%), Gaps = 68/570 (11%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM--------RGFEDIMLMSY 494 + LT+ + YL+K ++E+ + HN+K+D + ++Y + + R D ML Y Sbjct: 195 DCLTEVAVYYLQKILDSENHTIVFHNLKFD-MHFYKYHLGLTFDKAHKERRLHDTMLQHY 253 Query: 495 VLDSGRSSHDIASIAQKW---------LSYTRKEILKS---RKSSIPIDKISDSQVQEHA 542 VLD R +H + S+A K+ L + + K+ +K D I + +A Sbjct: 254 VLDERRGTHGLKSLAMKYTDMGDYDFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYA 313 Query: 543 IENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 ++++ L+L PK+ EKL +Y + P + ++E G+ I D LK+ + Sbjct: 314 AKDTDATLRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQ 373 Query: 602 ISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651 ++ NL E +Y E FN +S KQL +LF + P+G T TG Sbjct: 374 LTHNLNKAREKLYTYPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADS 433 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A+ L +++ +PI K +LE R+L+K+ STY + + I+ + T + T +G Sbjct: 434 TDAEALNELST-QHPIAKTLLEIRKLTKLISTYVEKILLSIDADGC-IRTGFHEHMTTSG 491 Query: 712 RLASLEP-NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S NLQ +P + I+ ++PP ++I+ D + E+ A ++ + QV Sbjct: 492 RLSSSGKLNLQQLPRDESI---IKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQQV 548 Query: 771 FENSL-------DIHRMVAAEIFGVNIE-----KVSPQMRRHAKTINFSIIYGISPFRLA 818 F N D H +A +F + E K+ P +R+ AK I F I+YG P ++A Sbjct: 549 FINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGILYGSGPAKVA 608 Query: 819 TQL----------------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 + ++A +YI+ YF +FP + +I+K + ++ +G++ + Sbjct: 609 HSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHGFIYSH 668 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM-- 920 FGR+ I+S ++ R+ NA IQ +++D + + L +M Sbjct: 669 FGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGAVDADNEIISLGLEQEMKI 728 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEK 950 ++ +HD +V V E+ I ++I++ +++K Sbjct: 729 VMLVHDSVVAIVREDLIDQYNEILIRNIQK 758 >gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase Length = 924 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 110/351 (31%), Positives = 186/351 (52%), Gaps = 25/351 (7%) Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 G+K N S KQLG++LF ++ + T G +T D + + +K ++E+R+ Sbjct: 497 GGDKINFGSTKQLGELLFERMGLETVIFTDKGA-PSTNDDSLKFMGSQSDFVKVLMEFRK 555 Query: 677 LSKIKSTYADSL-----PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD--- 728 + + + + L P++I VH Y++ T+TGRL+S EPN Q P K + Sbjct: 556 ANHLYNNFVSKLSLMIDPDNI------VHPSYNIHGTVTGRLSSNEPNAQQFPRKVNTPT 609 Query: 729 LGQ---KIRRAFIS--PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 L Q +I++ F S ++ DYSQ+ELRIL ++ + D+H+ VA+ Sbjct: 610 LFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADLHKAVAS 669 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHR 838 + FGV IE+VS R +K I F I+Y S L+ LR + E +IK+YF R Sbjct: 670 DAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGITMSEDECEIFIKKYFKR 729 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 FP + ++I TK V+ V+T+ G + +I+S S N ER A+N PIQG+ +D Sbjct: 730 FPKVSKWIRDTKKHVKDISTVKTLTGATRNLPDIDSIDQSKANEAERQAVNTPIQGTGSD 789 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 T ++I +++ L + L +++ + +HD +V + P++E+ ++ + H ME Sbjct: 790 CTLMSLILINQWLRESGLRSRICITVHDSIVLDCPKDEVLEVAKKVKHIME 840 >gi|209962628|gb|ACJ02109.1| Taq DNA polymerase [Escherichia coli] Length = 306 Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats. Identities = 107/295 (36%), Positives = 160/295 (54%), Gaps = 30/295 (10%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 + + + LVDG YR F+A L+ G PV A+ GF L K L+ I Sbjct: 7 EPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDAVI---- 61 Query: 62 AVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDII 121 V+FD A +FR+E Y YKA R PE QL L++ G+ +E+ G+EADD++ Sbjct: 62 -VVFDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVL 120 Query: 122 ATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIKK 171 A+ AEKEG+ V I++ DKDL QL+S ++I + H + +K Sbjct: 121 ASLAKKAEKEGYEVRILTADKDLYQLLS-----------DRIHVLHPEGYLITPAWLWEK 169 Query: 172 WGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRE 231 +G+ P++ +ALTGD DN+PG+ GIG KTA LL+E+G+LE +L N R+K RE Sbjct: 170 YGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAI-RE 228 Query: 232 NILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 IL + + +LS L +RTD+P+ + + + RL +FL+ LEF L++ Sbjct: 229 KILAHMDDLKLSWDLAKVRTDLPLEVDFAK--RREPDRERLXAFLERLEFGSLLH 281 >gi|309805883|ref|ZP_07699917.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV 03V1-b] gi|308167724|gb|EFO69869.1| 5'-3' exonuclease, SAM domain protein [Lactobacillus iners LactinV 03V1-b] Length = 348 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 164/300 (54%), Gaps = 19/300 (6%) Query: 7 LFLVDGSSFIYRAFYATPLLSRKHD------GLPVNAIAGFCNMLWKLLQNSRKESIASH 60 L L+DG+S +RAFYA L ++ D GL NAI F NML LL+N + +H Sbjct: 4 LLLIDGNSVAFRAFYA---LYKQLDKFKSPEGLHTNAIFTFKNMLDVLLKNIQ----PTH 56 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V FD +TFRN++Y DYK R K P L QLP+++ GI + E+ +EADDI Sbjct: 57 MLVAFDAGKITFRNKMYADYKGGRDKTPNELSEQLPIIKELLAYLGIKSYELSNYEADDI 116 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIE-----HVIKKWGIP 175 + T + GF VTI++ D+DL QL + T K+ D+E H+ + +G+ Sbjct: 117 LGTMAKMGTDLGFEVTIVTGDRDLTQLAGEHVTVMVT-KKGVNDLEIYTPKHMQEVYGVT 175 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++AL GD+ DN PG+ +G KTA+ L+ +YG++EN+ +IK K +E ++ Sbjct: 176 PKQFIDVKALMGDASDNYPGVEKVGAKTASKLINQYGSVENLYEKIDQIKASKIKEYLIR 235 Query: 236 YAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCD 295 A L +KL + P+ + ++ + L+ +L SF + L F K ++ + + D Sbjct: 236 DKNNAILGKKLATIDCTSPVDLKIDDVKLQAQQLTQLRSFYERLGFKKFLSELPDVEEID 295 >gi|182682934|ref|YP_001837058.1| DNA polymerase [Enterobacteria phage EPS7] gi|182630646|gb|ACB97578.1| DNA polymerase [Enterobacteria phage EPS7] Length = 855 Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 149/572 (26%), Positives = 273/572 (47%), Gaps = 72/572 (12%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY----GISM------RGFEDIMLM 492 +++T+ + YL+K ++++ + HN+K+D +H Y G+S R D ML Sbjct: 195 DSITEVAVHYLQKILDSKNHQIVFHNLKFD---MHFYSYHLGLSFEKAHKERRLHDTMLQ 251 Query: 493 SYVLDSGRSSHDIASIAQKW---------LSYTRKEILKS---RKSSIPIDKISDSQVQE 540 YVLD R +H + S+A K+ L +++ K+ +K D I + Sbjct: 252 HYVLDERRGTHGLKSLAMKYTDMGDYDFELDKFKEDYCKAHKIKKEDFSYDLIPFDIMWP 311 Query: 541 HAIENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVS 599 +A ++++ L+L PK+ EKL +Y + P + ++E G+ I D LK+ Sbjct: 312 YAAKDTDATLRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISVDRLKEAQ 371 Query: 600 AEISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQ 649 +++ NL E +Y E FN +S KQL +LF + P+G T TG Sbjct: 372 YQLTHNLNKAREKLYTYPEVVQLEKDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGA 431 Query: 650 WKTTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTM 709 T A+ L ++ +PI K +LE R+L+K+ STY + + I+ + T + T Sbjct: 432 DSTNAEALNEL-ATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGC-IRTGFHEHMTT 489 Query: 710 TGRLASLEP-NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLY 768 +GRL+S NLQ +P + I+ ++PP ++I+ D + E+ A ++ + Sbjct: 490 SGRLSSSGKLNLQQLPRDESI---IKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQ 546 Query: 769 QVFENSL-------DIHRMVAAEIFGV-----NIEKVSPQMRRHAKTINFSIIYGISPFR 816 QVF N D H +A +F + +++K+ P +R+ AK I F I+YG P + Sbjct: 547 QVFINMKNEPDKYPDFHSNIAHMVFKLTCEPRDVKKLFPALRQAAKAITFGILYGSGPAK 606 Query: 817 LATQL----------------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVE 860 +A + ++A DYI+ YF +FP + +I+K + ++ G++ Sbjct: 607 VAHSVNEALLEQAAKTGEPFVECTVADAKDYIETYFGQFPQLKRWIDKCHDQIKNFGFIY 666 Query: 861 TIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 + FGR+ I+S ++ R+ NA IQ +++D I + + L +M Sbjct: 667 SHFGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGAIDADEEILSLGLGKEM 726 Query: 921 --LLQIHDELVFEVPEEEITTASQIIVHSMEK 950 ++ +HD +V V E+ I ++I++ +++K Sbjct: 727 KIVMLVHDSVVAIVREDLIDQYNEILIRNIQK 758 >gi|297847428|ref|XP_002891595.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp. lyrata] gi|297337437|gb|EFH67854.1| hypothetical protein ARALYDRAFT_474208 [Arabidopsis lyrata subsp. lyrata] Length = 1047 Score = 169 bits (427), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 103/309 (33%), Positives = 159/309 (51%), Gaps = 29/309 (9%) Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 ++++ + RVH ++ +T TGRL++ PNLQN P KIR+AF++ P L+ AD Sbjct: 738 SNVSGKDGRVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVAD 796 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF---------GVNIEKVSPQ---- 796 Y Q+ELRILAH+ + + F+ D H A ++ G I + PQ Sbjct: 797 YGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHIREAVENGQVILEWHPQPGED 856 Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 RR AK +NFSI YG + L+ ++ EA D +K +++ + Sbjct: 857 KPPVPLLKDAFGSERRKAKMLNFSIAYGKTAIGLSRDWKVSVEEAQDTVKLWYNDRQEVR 916 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 ++ E+ K ++GYV T+ GR + S + +N +RAAIN P+QGSAAD+ A Sbjct: 917 KWQERRKKEAIEDGYVRTLLGRSRRFPRYKS--RAQKNHIQRAAINTPVQGSAADVAMCA 974 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + + + KL ++LLQIHDE++ E P E A I+V M K + L V L Sbjct: 975 MLEISTNQQLKKLGWRLLLQIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLS 1034 Query: 964 VNIKVSNNW 972 V+ K + NW Sbjct: 1035 VDAKCAQNW 1043 Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%) Query: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGFE-DIMLMSYVL 496 D G+N +E+L+ K +FE+ K+ HN +D ++ +GI + GF D M M+ + Sbjct: 331 DVLGENG--REVLAEFKPYFEDSFIRKVWHNYSFDSHIIRNHGIEISGFHADTMHMARLW 388 Query: 497 DSGR 500 DS R Sbjct: 389 DSAR 392 >gi|281207443|gb|EFA81626.1| DNA polymerase theta short isoform [Polysphondylium pallidum PN500] Length = 1192 Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 129/464 (27%), Positives = 227/464 (48%), Gaps = 66/464 (14%) Query: 566 LHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSGE-KFNLS 624 L + ++ P+ ++++ME GI D ++ + + K + L + L K ++ Sbjct: 707 LKILFEIEMPVTPILARMEFIGIGFDDEICQNTRELVQKKIDYLIYKAHLLVPRLKLDME 766 Query: 625 SPKQLGDILFTKLKFP-----SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSK 679 S Q+ D+++ LK + K + T A LE I+ ++P ++E+R+LS Sbjct: 767 SKIQMSDVMYNWLKLTKPDSRTNKKVLKESYSTNAHHLETIS-HEHPFPNILMEYRKLSH 825 Query: 680 IKSTYADSLPNHINKRTQRVHTFYS-LASTM--TGRLASLEPNLQNI--PIK-------- 726 + YAD L + + T YS + T+ TGRLA + PNLQ+I PI+ Sbjct: 826 HINNYADELRKYCYRSTDNSMRIYSTILQTIVPTGRLAMVFPNLQSIAHPIEFKVAPTFT 885 Query: 727 -------------------------------------TDLGQKIRRAFISPPTKKLISAD 749 L KIR +F+ +SAD Sbjct: 886 PSPLSIASNSSDIEIPAVDLENHSSQYNNLVAMESKCETLSIKIRDSFLPKQGYIFLSAD 945 Query: 750 YSQIELRILAHIAKITPLYQVFENS-LDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSI 808 YSQIELRILAH ++ L ++F NS +D+ ++++ ++ + +E++ R AK + + I Sbjct: 946 YSQIELRILAHFSQDPKLLEIFNNSTVDVFKLISHQMSKIPLEQIKDSDRTIAKHLCYGI 1005 Query: 809 IYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIH 868 +YG+ +LA L + +A + R+ + + +Y+ + +NG+VET FGR+ + Sbjct: 1006 LYGMGIGKLAHDLNTTKDKAKAALLRFKTTYQVLTDYLTSVGDSCLKNGFVETFFGRKRY 1065 Query: 869 YDEINSPKSSIRNINE------RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLL 922 + E+ + NE R A N QG+AADI++ AMI V K L + + +++L Sbjct: 1066 FREVFEVYKDTKVTNEVKESAKRKAKNTIPQGTAADISKLAMIQVDKKLNERGIPAEIVL 1125 Query: 923 QIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNI 966 Q+HDEL+ EVPE ++ + I+ SME A K+++ +P+K++I Sbjct: 1126 QVHDELLLEVPESQLAEVALIVKESMESAA--KLSIPIPIKMSI 1167 >gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1] Length = 924 Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 110/351 (31%), Positives = 185/351 (52%), Gaps = 25/351 (7%) Query: 617 SGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQ 676 G+K N S KQLG++LF ++ + T G +T D + + +K ++E+R Sbjct: 497 GGDKINFGSTKQLGELLFERMGLETVIFTDKGA-PSTNDDSLKFMGSQSDFVKVLMEFRN 555 Query: 677 LSKIKSTYADSL-----PNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTD--- 728 + + + + L P++I VH Y++ T+TGRL+S EPN Q P K + Sbjct: 556 GNHLYNNFVSKLSLMIDPDNI------VHPSYNIHGTVTGRLSSNEPNAQQFPRKVNTPT 609 Query: 729 LGQ---KIRRAFIS--PPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 L Q +I++ F S ++ DYSQ+ELRIL ++ + D+H+ VA+ Sbjct: 610 LFQYNFEIKKMFNSRFGDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADLHKAVAS 669 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLR-----IPRSEAADYIKRYFHR 838 + FGV IE+VS R +K I F I+Y S L+ LR + E +IK+YF R Sbjct: 670 DAFGVAIEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGITMSEDECEIFIKKYFKR 729 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAAD 898 FP + ++I TK V+ V+T+ G + +I+S S N ER A+N PIQG+ +D Sbjct: 730 FPKVSKWIRDTKKHVKDISTVKTLTGATRNLPDIDSIDQSKANEAERQAVNTPIQGTGSD 789 Query: 899 ITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSME 949 T ++I +++ L + L +++ + +HD +V + P++E+ ++ + H ME Sbjct: 790 CTLMSLILINQWLRESGLRSRICITVHDSIVLDCPKDEVLEVAKKVKHIME 840 >gi|51512060|gb|AAU05259.1| DNA-directed DNA polymerase [Enterobacteria phage T5] Length = 855 Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 146/570 (25%), Positives = 272/570 (47%), Gaps = 68/570 (11%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM--------RGFEDIMLMSY 494 + LT+ + YL+K ++E+ + HN+K+D + ++Y + + R D ML Y Sbjct: 195 DCLTEVAVYYLQKILDSENHTIVFHNLKFD-MHFYKYHLGLTFDKAHKERRLHDTMLQHY 253 Query: 495 VLDSGRSSHDIASIAQKW---------LSYTRKEILKS---RKSSIPIDKISDSQVQEHA 542 VLD R +H + S+A K+ L + + K+ +K D I + +A Sbjct: 254 VLDERRGTHGLKSLAMKYTDMGDYDFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYA 313 Query: 543 IENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 ++++ ++L PK+ EKL +Y + P + ++E G+ I D LK+ + Sbjct: 314 AKDTDATIRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQ 373 Query: 602 ISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651 ++ NL E +Y E FN +S KQL +LF + P+G T TG Sbjct: 374 LTHNLNKAREKLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADS 433 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A+ L ++ +PI K +LE R+L+K+ STY + + I+ + T + T +G Sbjct: 434 TDAEALNEL-ATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGC-IRTGFHEHMTTSG 491 Query: 712 RLASL-EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S + NLQ +P + I+ I+PP ++I+ D + E+ A ++ + QV Sbjct: 492 RLSSSGKLNLQQLPRDESI---IKGCVIAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQQV 548 Query: 771 FENSL-------DIHRMVAAEIFGV-----NIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 F N D H +A +F + +++K+ P +R+ AK I F I+YG P ++A Sbjct: 549 FINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGILYGSGPAKVA 608 Query: 819 TQL----------------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 + ++A +YI+ YF +FP + +I+K + ++ +G++ + Sbjct: 609 HSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHGFIYSH 668 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM-- 920 FGR+ I+S ++ R+ NA IQ +++D + + L +M Sbjct: 669 FGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGAVDADNEIISLGLEQEMKI 728 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEK 950 ++ +HD +V V E+ I ++I++ +++K Sbjct: 729 VMLVHDSVVAIVREDLIDQYNEILIRNIQK 758 >gi|118855|sp|P19822|DPOL_BPT5 RecName: Full=DNA polymerase gi|215988|gb|AAA32561.1| polymerase [Enterobacteria phage T5] Length = 829 Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 146/570 (25%), Positives = 269/570 (47%), Gaps = 68/570 (11%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM--------RGFEDIMLMSY 494 + LT+ + YL+K ++E+ + HN+K+D + ++Y + + R D ML Y Sbjct: 169 DCLTEVAVYYLQKILDSENHTIVFHNLKFD-MHFYKYHLGLTFDKAHKERRLHDTMLQHY 227 Query: 495 VLDSGRSSHDIASIAQKW---------LSYTRKEILKS---RKSSIPIDKISDSQVQEHA 542 VLD R +H + S+A K+ L + + K+ +K D I + +A Sbjct: 228 VLDERRGTHGLKSLAMKYTDMGDYDFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYA 287 Query: 543 IENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 ++++ ++L PK+ EKL +Y + P + ++E G+ I D LK+ + Sbjct: 288 AKDTDATIRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQ 347 Query: 602 ISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651 ++ NL E +Y E FN +S KQL +LF + P+G T TG Sbjct: 348 LTHNLNKAREKLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADS 407 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A+ L ++ +PI K +LE R+L+K+ STY + + I+ + T + T +G Sbjct: 408 TDAEALNEL-ATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGC-IRTGFHEHMTTSG 465 Query: 712 RLASLEP-NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S NLQ +P + I+ ++PP ++I+ D + E+ A ++ + QV Sbjct: 466 RLSSSGKLNLQQLPRDESI---IKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQQV 522 Query: 771 FENSL-------DIHRMVAAEIFGVNIE-----KVSPQMRRHAKTINFSIIYGISPFRLA 818 F N D H +A +F + E K+ P +R+ AK I F I+YG P ++A Sbjct: 523 FINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGILYGSGPAKVA 582 Query: 819 TQL----------------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 + ++A +YI+ YF +FP + +I+K + ++ +G++ + Sbjct: 583 HSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHGFIYSH 642 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM-- 920 FGR+ I+S ++ R+ NA IQ +++D + + L +M Sbjct: 643 FGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGAVDADNEIISLGLEQEMKI 702 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEK 950 ++ +HD +V V E+ I ++I++ +++K Sbjct: 703 VMLVHDSVVAIVREDLIDQYNEILIRNIQK 732 >gi|299821685|ref|ZP_07053573.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601] gi|299817350|gb|EFI84586.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601] Length = 290 Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 93/266 (34%), Positives = 151/266 (56%), Gaps = 13/266 (4%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 K+ +L +VDG + ++RAFYAT + + DG+P N + GF L L ++S + Sbjct: 4 KQENLLVVDGMALLFRAFYATAVSKQFMFNQDGIPTNGVQGFMKHLLAAL----RQSDPT 59 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H + +D + TFRNE+Y YKANR PE ++PQ L + FG + + G+EADD Sbjct: 60 HALICWDMGSKTFRNELYDGYKANRTAPPEEMIPQFDLAKEVAAGFGFVNVGVPGYEADD 119 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175 I T T + + + T++S DKDL+QL+SP+ ++ K ++ D ++ GI Sbjct: 120 CIGTIT-ASLGQSLSTTVLSGDKDLLQLLSPSNQVWIMQKGFGNYKRYDEATFYEEMGIT 178 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++ + ++AL GD+ D PG+ GIG KTA L+Q +G++E +L N ++K ++R+ I E Sbjct: 179 PKQFIDVKALMGDTSDGYPGVRGIGEKTALTLIQTFGSIEGVLANLEQLKPAQKRK-IQE 237 Query: 236 YAETARLSRKLVMLRTDVPITIPLEH 261 LSR+L + VP+ + E Sbjct: 238 DLAMLELSRQLAEIHVAVPLEVNYEQ 263 >gi|311030373|ref|ZP_07708463.1| 5'-3' exonuclease [Bacillus sp. m3-13] Length = 289 Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 95/260 (36%), Positives = 150/260 (57%), Gaps = 13/260 (5%) Query: 7 LFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 + L+DG + ++R+F+AT + +R +G+P NAI GF K + S + +H Sbjct: 4 VLLIDGMALLFRSFFATSVYNRFMYTSNGIPTNAIQGFV----KHMITSMETFEPTHVVC 59 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +D + TFR E++ DYKANRP P+ L+PQ LV+ +AF IP I + GFEADD + T Sbjct: 60 CWDMGSKTFRTEMFDDYKANRPAPPQELIPQFDLVKEVVEAFDIPNIGLAGFEADDCLGT 119 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIPPEKM 179 + +E V I++ D+D++QL+ P + +K E +D +K G+ P+++ Sbjct: 120 LAELYREEA-EVIILTGDQDVLQLIKPNIKVALLMKGYGNYEVLDENGFYEKKGLTPQQL 178 Query: 180 VCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAET 239 + L+A+ GDS DN PG+ G+G KTA LL EY ++ IL N S + K +R+ + E Sbjct: 179 IDLKAIMGDSSDNYPGVKGVGEKTATKLLMEYQTVDGILENLSAL-TKSQRQKFEDSLEL 237 Query: 240 ARLSRKLVMLRTDVPITIPL 259 LSR+L ++ DVP+ L Sbjct: 238 LHLSRELATIKCDVPVYCEL 257 >gi|74228402|dbj|BAE24040.1| unnamed protein product [Mus musculus] Length = 299 Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 97/275 (35%), Positives = 144/275 (52%), Gaps = 37/275 (13%) Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792 +R AF+ P +++ADYSQ+ELRILAH+++ L QV D+ R +AAE + + Sbjct: 23 MRHAFVPFPGGLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIEPDA 82 Query: 793 VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNF 852 V +R+HAK I + IIYG+ L Q+ I ++AA YI + R+ GI+ ++ T Sbjct: 83 VGDDLRQHAKQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMRDTVKN 142 Query: 853 VRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLE 912 R+NG+VETI GRR + I + ER AIN +QGSAADI + A +++ K LE Sbjct: 143 CRKNGFVETILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLE 202 Query: 913 DHKLATK---------------------------------MLLQIHDELVFEVPEEEITT 939 + K +LQ+HDEL++EV EE++ Sbjct: 203 TFRSTFKSHGHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAEEDVVQ 262 Query: 940 ASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 +QI+ + ME A I L V LKV +K+ +W E Sbjct: 263 VAQIVKNEMECA----IKLSVKLKVKVKIGASWGE 293 >gi|46401858|ref|YP_006950.1| DNA polymerase [Enterobacteria phage T5] gi|45775036|gb|AAS77168.1| DNA polymerase [Enterobacteria phage T5] Length = 855 Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 145/570 (25%), Positives = 272/570 (47%), Gaps = 68/570 (11%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM--------RGFEDIMLMSY 494 + LT+ + YL+K ++E+ + HN+K+D + ++Y + + R D ML Y Sbjct: 195 DCLTEVAVYYLQKILDSENHTIVFHNLKFD-MHFYKYHLGLTFDKAHKERRLHDTMLQHY 253 Query: 495 VLDSGRSSHDIASIAQKW---------LSYTRKEILKS---RKSSIPIDKISDSQVQEHA 542 VLD R +H + S+A K+ L + + K+ +K D I + +A Sbjct: 254 VLDERRGTHGLKSLAMKYTDMGDYDFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYA 313 Query: 543 IENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 ++++ ++L PK+ EKL +Y + P + ++E G+ I D LK+ + Sbjct: 314 AKDTDATIRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQ 373 Query: 602 ISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651 ++ NL E +Y E FN +S KQL +LF + P+G T TG Sbjct: 374 LTHNLNKAREKLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADS 433 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A+ L ++ +PI K +LE R+L+K+ STY + + I+ + T + T +G Sbjct: 434 TDAEALNEL-ATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGC-IRTGFHEHMTTSG 491 Query: 712 RLASL-EPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S + NLQ +P + I+ ++PP ++I+ D + E+ A ++ + QV Sbjct: 492 RLSSSGKLNLQQLPRDESI---IKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQQV 548 Query: 771 FENSL-------DIHRMVAAEIFGV-----NIEKVSPQMRRHAKTINFSIIYGISPFRLA 818 F N D H +A +F + +++K+ P +R+ AK I F I+YG P ++A Sbjct: 549 FINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGILYGSGPAKVA 608 Query: 819 TQL----------------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 + ++A +YI+ YF +FP + +I+K + ++ +G++ + Sbjct: 609 HSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHGFIYSH 668 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM-- 920 FGR+ I+S ++ R+ NA IQ +++D + + L +M Sbjct: 669 FGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGAVDADNEIISLGLEQEMKI 728 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEK 950 ++ +HD +V V E+ I ++I++ +++K Sbjct: 729 VMLVHDSVVAIVREDLIDQYNEILIRNIQK 758 >gi|212639099|ref|YP_002315619.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Anoxybacillus flavithermus WK1] gi|212560579|gb|ACJ33634.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Anoxybacillus flavithermus WK1] Length = 277 Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 95/265 (35%), Positives = 150/265 (56%), Gaps = 12/265 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIAS 59 M++E HL L+DG + ++R+FYAT P G+P NA+ G K ++ + + Sbjct: 1 MERE-HLLLIDGMALLFRSFYATAPRWMMNSRGVPTNAVYGVV----KHIEAATNALQPT 55 Query: 60 HFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 H +D + TFR E +PDYKANR + P L+PQ L + GIP I + G EADD Sbjct: 56 HVVCCWDMGSTTFRTEWFPDYKANRGEPPHELIPQFDLAKEVVAMLGIPNIGVLGAEADD 115 Query: 120 IIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGIP 175 I + +E ++I++ D+DL QL+S +Y K E ++ I++ GI Sbjct: 116 CIGSLVK-QYREEMRISIMTGDRDLFQLLSERVTVYLLAKGIGNYEAYTLDRFIEEKGIQ 174 Query: 176 PEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILE 235 P++++ ++AL GD DN PG+ GIG K A L+Q+YG++E I+ N + + K +++ I E Sbjct: 175 PQQLIDVKALMGDPSDNYPGVRGIGEKQAVKLIQQYGSIEGIIANLANLT-KAQQQKITE 233 Query: 236 YAETARLSRKLVMLRTDVPITIPLE 260 + + LSRKL + D+PI + LE Sbjct: 234 HLDLLHLSRKLAAIHCDIPIQLELE 258 >gi|28493259|ref|NP_787420.1| DNA polymerase I [Tropheryma whipplei str. Twist] gi|28476300|gb|AAO44389.1| DNA polymerase I [Tropheryma whipplei str. Twist] Length = 356 Score = 167 bits (423), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 110/308 (35%), Positives = 165/308 (53%), Gaps = 15/308 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + L LVDG S +R+FY T ++ +G+ VNA+ GF N L +LL++ SH Sbjct: 5 LDQSKRLILVDGHSLAFRSFYGTKAIAVV-NGVQVNALYGFVNRLTQLLESGP----VSH 59 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 FAV FD +FR E YP+YK R K+PE PQ+ L++ G+ +Q +EADDI Sbjct: 60 FAVAFDVSRKSFRTEAYPEYKGTRKKVPEEFFPQVDLIKEFLHLIGVNHFAVQNYEADDI 119 Query: 121 IATYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGI 174 IAT + +A +EGF+ V I+S D+DL+QLV+ L + ++ E V+ ++GI Sbjct: 120 IATLSRLALEEGFSDVRILSGDRDLIQLVNNKVSLLFFSAKHRLGFAVYTPEAVMDRYGI 179 Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 P + AL G+S DN+PGI IG KTA LLQ+YG L+ I+ + I +NI Sbjct: 180 EPHVYPDMAALVGESSDNLPGIKKIGEKTATTLLQKYGCLQKIIESRWEISGVV-GQNIR 238 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHLILE-DCNGPRLISFLKALEFTKLINRVATTYD 293 A +RKL L D+P+ + L L + + +L FL+ + R+ Sbjct: 239 NDYHVALRNRKLNTLVNDLPLPASVSDLSLSGEIDTKKLEGFLRRYRMNSITPRLLRCLQ 298 Query: 294 --CDAANI 299 +AAN+ Sbjct: 299 KFTNAANL 306 >gi|59897255|gb|AAX12050.1| DNA polymerase [Enterobacteria phage T5] Length = 825 Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 146/570 (25%), Positives = 269/570 (47%), Gaps = 68/570 (11%) Query: 443 NTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISM--------RGFEDIMLMSY 494 + LT+ + YL+K ++E+ + HN+K+D + ++Y + + R D ML Y Sbjct: 165 DCLTEVAVYYLQKILDSENHTIVFHNLKFD-MHFYKYHLGLTFDKAHKERRLHDTMLQHY 223 Query: 495 VLDSGRSSHDIASIAQKW---------LSYTRKEILKS---RKSSIPIDKISDSQVQEHA 542 VLD R +H + S+A K+ L + + K+ +K D I + +A Sbjct: 224 VLDERRGTHGLKSLAMKYTDMGDYDFELDKFKDDYCKAHKIKKEDFTYDLIPFDIMWPYA 283 Query: 543 IENSNVILQLWLLLRPKLIV-EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 ++++ ++L PK+ EKL +Y + P + ++E G+ I D LK+ + Sbjct: 284 AKDTDATIRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQYQ 343 Query: 602 ISKNLLSLEENIYDL---------SGEKFNLSSPKQLGDILFTKLKF-PSGAKTKTGQWK 651 ++ NL E +Y E FN +S KQL +LF + P+G T TG Sbjct: 344 LTHNLNKAREKLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGLTPTGKLTDTGADS 403 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTG 711 T A+ L ++ +PI K +LE R+L+K+ STY + + I+ + T + T +G Sbjct: 404 TDAEALNEL-ATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGC-IRTGFHEHMTTSG 461 Query: 712 RLASLEP-NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQV 770 RL+S NLQ +P + I+ ++PP ++I+ D + E+ A ++ + QV Sbjct: 462 RLSSSGKLNLQQLPRDESI---IKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQQV 518 Query: 771 FENSL-------DIHRMVAAEIFGVNIE-----KVSPQMRRHAKTINFSIIYGISPFRLA 818 F N D H +A +F + E K+ P +R+ AK I F I+YG P ++A Sbjct: 519 FINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGILYGSGPAKVA 578 Query: 819 TQL----------------RIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETI 862 + ++A +YI+ YF +FP + +I+K + ++ +G++ + Sbjct: 579 HSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHGFIYSH 638 Query: 863 FGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM-- 920 FGR+ I+S ++ R+ NA IQ +++D + + L +M Sbjct: 639 FGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGAVDADNEIISLGLEQEMKI 698 Query: 921 LLQIHDELVFEVPEEEITTASQIIVHSMEK 950 ++ +HD +V V E+ I ++I++ +++K Sbjct: 699 VMLVHDSVVAIVREDLIDQYNEILIRNIQK 728 >gi|258539931|ref|YP_003174430.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705] gi|257151607|emb|CAR90579.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus Lc 705] Length = 191 Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 83/190 (43%), Positives = 121/190 (63%), Gaps = 5/190 (2%) Query: 784 EIFGVNI-EKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGI 842 +IFG++ ++V+P MRR AK NF I+YGIS + LA + I R +A +I YF ++P + Sbjct: 2 KIFGLDSPDEVTPDMRRQAKATNFGIVYGISDYGLAQNIGISRKQAKAFIDGYFEQYPKV 61 Query: 843 HEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRR 902 H+Y+E R++GYVET+F RR + +I+S ++R ER A+N PIQGSAADI + Sbjct: 62 HDYMENMVKKAREDGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKV 121 Query: 903 AMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPL 962 AMI + K+L++ L KMLLQ+HDEL+FE P E+ Q++ M+ A ++L VPL Sbjct: 122 AMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSA----VSLAVPL 177 Query: 963 KVNIKVSNNW 972 KV W Sbjct: 178 KVESHYGPTW 187 >gi|328868272|gb|EGG16650.1| mitochondrial DNA polymerase A [Dictyostelium fasciculatum] Length = 1855 Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 104/310 (33%), Positives = 155/310 (50%), Gaps = 30/310 (9%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHF 61 Q NH+ ++DG+ Y+A+ L+ H+G P+ A+ GF L K+L KE + Sbjct: 773 QNNNHVVIIDGTPLAYKAYNTISGLT--HNGEPIGALFGFTKALLKIL----KELKPDYV 826 Query: 62 AVIFD--YPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADD 119 V FD A FR++IY YKANRP P L QLPL+ A GI + FE+DD Sbjct: 827 LVCFDPTDGAGNFRHDIYEKYKANRPSTPLDLKQQLPLLPQVCTALGIEYAKQSRFESDD 886 Query: 120 IIATYTYIAEKEG---------------------FAVTIISTDKDLMQLVSPTTCLYDTV 158 +IATY I E+ + TI+S DKD++QLVS +Y+T Sbjct: 887 LIATYANIVEQANKKLAAGNDNLVVDGQQQQQQKYRATIVSDDKDMLQLVSDDVHIYNTR 946 Query: 159 KEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENIL 218 + VI K G+P + QAL GDS+DNIPG+P +G K+A+ ++ G+++N+L Sbjct: 947 TNSIFCHQDVIDKMGVPSHLITSFQALAGDSVDNIPGVPSLGPKSASAIINSLGHIDNVL 1006 Query: 219 INASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKA 278 N +I K RE + +E ++S +L L +PLE L N + + FL Sbjct: 1007 ANIEQIPL-KFREKVRNNSEQIKISYQLATLSKQAETKVPLEGLKWNPVNKLQFVEFLDK 1065 Query: 279 LEFTKLINRV 288 F + ++ Sbjct: 1066 YNFNNIKGKL 1075 Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 96/301 (31%), Positives = 142/301 (47%), Gaps = 26/301 (8%) Query: 697 QRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELR 756 R+HT ++ +T TGRL+S PNLQN P KIR+AF P L+ ADY Q+ELR Sbjct: 1556 HRLHTSVNV-NTETGRLSSRRPNLQNQPALEKDRYKIRKAFTCEPGNTLVVADYGQLELR 1614 Query: 757 ILAHIAKITPLYQVFENSLDIHRMVAAEIFG--------------VNIEKVSPQ------ 796 +L HI + F D H A ++ + E P+ Sbjct: 1615 LLGHITNCKSMLDAFRVGGDFHSRTAMGMYPHVRAAVDAGEVLLEWDGEGAPPKPLLKDK 1674 Query: 797 ---MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFV 853 RR AKT+NFSI YG + L+ + SEA + + R++ P + + T Sbjct: 1675 FASERRKAKTLNFSIAYGKTAHGLSKDWNVTLSEAQNTLNRWYEDRPEVLLWQRSTIQIA 1734 Query: 854 RQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLED 913 Q + T+ GR +I+S +ERA+IN P+QG AADI +AM+ + + Sbjct: 1735 HQKKWTRTLMGRYRLLPDIDSKARGFVGHSERASINTPLQGGAADIVMKAMLIIEQDARL 1794 Query: 914 HKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQ 973 +L ++++QIHDEL+ E PEE A I++ M L V L V+ + + W Sbjct: 1795 KELGYRLIMQIHDELILEGPEEHAPEARDIVIKLMGNPL--NKPLLVDLVVDCRFAKTWY 1852 Query: 974 E 974 E Sbjct: 1853 E 1853 Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust. Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 36/227 (15%) Query: 448 EILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRGF-EDIMLMSYVLDSG---RSSH 503 EIL K++FE+E K+ HN +D+ V + + I + GF D MLM+ + D+ R + Sbjct: 1193 EILQIFKEYFEDESIFKVWHNYAFDRHVFYNHNIDVVGFGGDTMLMARLWDASRMMRGGY 1252 Query: 504 DIASIAQKWLSYTRKEI--------LKSRKSSI------PIDKISDSQVQ-----EHAIE 544 + + + L + + LKS + P++ + S E++ Sbjct: 1253 SLEGLTKDLLDKHKTNMDDLFGQPKLKSDGTPGKGIILPPLEHLQRSSKHLTKWIEYSSR 1312 Query: 545 NSNVILQLWLLLRPKLIV-------EKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 ++ V L L KL+ + Y + +P +++ ME G+++D + LK Sbjct: 1313 DAEVTWMLRENLHKKLMTMEWIGPNSNMWDFYYMMWRPFGQLLTDMERRGMKVDLEHLKG 1372 Query: 598 VSAEISKNLLSLEENI------YDLSGEKFNLSSPKQLGDILFTKLK 638 V +++ EN Y + + N+ S Q+ LF + Sbjct: 1373 VEVIAQRDITEHNENFRRWALGYCENVKHMNIDSDAQVQQFLFAPCR 1419 >gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochmannia floridanus] gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus Blochmannia floridanus] Length = 943 Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 105/284 (36%), Positives = 153/284 (53%), Gaps = 11/284 (3%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 N + LVDGS ++YRA++A P L+ + +G PV I G +M+ L+ + SH AV Sbjct: 8 HNPIILVDGSFYMYRAYHAYPPLTTQ-NGQPVWVIYGVISMIKSLITRYQ----PSHMAV 62 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 IFD TFR++++ YK+NR KIP+ L Q+ +A GI + I EADD+IAT Sbjct: 63 IFDVSGKTFRDDLFKQYKSNRIKIPDDLSIQIIPTHKIIKAMGISVLNIPNVEADDVIAT 122 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 + V I + DKD+ Q+VS L +T+ ++ V KK+G+PP + Sbjct: 123 LATFYAQLNKTVLISTGDKDMAQIVSSNIILINTMSNIMLNPTEVEKKFGVPPTLIADYL 182 Query: 184 ALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQ------KKRRENILEYA 237 AL GD DNIPG+PGIG KTA ++L + GNL + N + I Q KK + +L Sbjct: 183 ALVGDRADNIPGVPGIGKKTAQIVLNQIGNLNILYQNLNNILQLNIRGRKKIYQALLINK 242 Query: 238 ETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEF 281 E A L KL ++ DVP+ L++++ N LI EF Sbjct: 243 ELAFLCYKLATIKIDVPLQESDYKLLIQEINTQDLILLFTQYEF 286 >gi|28572629|ref|NP_789409.1| DNA polymerase I [Tropheryma whipplei TW08/27] gi|28410761|emb|CAD67147.1| DNA polymerase I [Tropheryma whipplei TW08/27] Length = 356 Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 110/306 (35%), Positives = 164/306 (53%), Gaps = 15/306 (4%) Query: 3 KENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 + L LVDG S +R+FY T ++ +G+ VNA+ GF N L +LL++ SHFA Sbjct: 7 QSKRLILVDGHSLAFRSFYGTKAIAVV-NGVQVNALYGFVNRLTQLLESGP----VSHFA 61 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V FD +FR E YP+YK R K+PE PQ+ L++ G+ +Q +EADDIIA Sbjct: 62 VAFDVSRKSFRTEAYPEYKGTRKKVPEEFFPQVDLIKEFLHLIGVNHFAVQNYEADDIIA 121 Query: 123 TYTYIAEKEGFA-VTIISTDKDLMQLVSPTTCLYDTVKEEKIDI-----EHVIKKWGIPP 176 T + +A +EGF+ V I+S D+DL+QLV+ L + ++ E V+ ++GI P Sbjct: 122 TLSRLALEEGFSDVRILSGDRDLIQLVNNKVSLLFFSAKHRLGFAVYTPEAVMDRYGIEP 181 Query: 177 EKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEY 236 + AL G+S DN+PGI IG KTA LLQ+YG L+ I+ + I +NI Sbjct: 182 HVYPDMAALVGESSDNLPGIKKIGEKTATTLLQKYGCLQKIIESRWEISGVV-GQNIRND 240 Query: 237 AETARLSRKLVMLRTDVPITIPLEHLILE-DCNGPRLISFLKALEFTKLINRVATTYD-- 293 A +RKL L D+P+ + L L + + +L FL+ + R+ Sbjct: 241 YHVALRNRKLNTLVNDLPLPASVSDLSLSGEIDTKKLEGFLRRYRMNSITPRLLRCLQKF 300 Query: 294 CDAANI 299 +AAN+ Sbjct: 301 TNAANL 306 >gi|291532675|emb|CBL05788.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Megamonas hypermegale ART12/1] Length = 240 Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 94/227 (41%), Positives = 133/227 (58%), Gaps = 10/227 (4%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 ++DGSS +YRAF+A PLL+ G+ NAI GF NML K+L + ++I V F Sbjct: 18 RFIIIDGSSLMYRAFFALPLLTSSS-GIYTNAIMGFANMLGKILTEYKPDNIV----VAF 72 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D TFR ++Y +YK R K P+ L Q+PL+R +A GI IE +EADDII T Sbjct: 73 DKSRQTFRTQMYAEYKGQREKTPDELKSQIPLLREFLEALGIAFIEKDNYEADDIIGTLA 132 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKW-GIPPEKMV 180 A + + I++ DKD +QL+ P + T + + D E +K+ G+ P K++ Sbjct: 133 TKAASQDYEALIVTGDKDALQLIRPNLKVMLTKRGIMDMQIFDEEAFKEKYAGLEPIKLI 192 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQK 227 ++AL GDS DNIPG+PGIG KTA LL +Y +LEN+L N + K Sbjct: 193 DIKALMGDSSDNIPGVPGIGEKTALKLLSQYQDLENLLNNIDNVSGK 239 >gi|218296583|ref|ZP_03497311.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23] gi|218243125|gb|EED09657.1| DNA-directed DNA polymerase [Thermus aquaticus Y51MC23] Length = 536 Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/296 (35%), Positives = 160/296 (54%), Gaps = 30/296 (10%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 + + + LVDG YR F+A L+ G PV A+ GF L K L+ I Sbjct: 8 FEPKGRVLLVDGHHLAYRTFHALKGLTTSR-GEPVQAVYGFAKSLLKALKEDGDSVI--- 63 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 V+FD A +FR+E Y YKA R PE QL L++ G+ +E+ G+EADD+ Sbjct: 64 --VVFDAKAPSFRHEAYEGYKARRAPTPEDFPRQLALIKELVDLLGLVRLEVPGYEADDV 121 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEH----------VIK 170 +A+ AEKEG+ V I++ DKDL QL+S ++I + H + + Sbjct: 122 LASLAKKAEKEGYEVRILTADKDLYQLLS-----------DRIHVLHPEGYLITPAWLWE 170 Query: 171 KWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 K G+ P++ +ALTGD DN+PG+ GIG KTA LL+E+G+LE +L N R++ R Sbjct: 171 KHGLRPDQWADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLERLLKNLDRLRPAI-R 229 Query: 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLIN 286 E IL + + +LS L +RTD+P+ + + + + RL +FL+ LEF L++ Sbjct: 230 EKILAHMDDLKLSWDLAKVRTDLPLEV--DFAKRREPDRERLRAFLERLEFGSLLH 283 Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 106/199 (53%), Gaps = 25/199 (12%) Query: 478 RYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQ 537 R G+ + +D ML++Y+LD ++ + +A+++ +E Sbjct: 362 REGLGLPPGDDPMLLAYLLDPSNTTPE--GVARRYGGEWTEE------------------ 401 Query: 538 VQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQ 597 E A + + LW L + E+LL +Y +++P+ V++ ME TG+++D L+ Sbjct: 402 AGERAALSERLFANLWERLEGE---ERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRA 458 Query: 598 VSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKT-KTGQWKTTAQD 656 +S E+++ + LE ++ L+G FNL+S QL +LF +L P+ KT KTG+ T+A Sbjct: 459 LSLEVAEEIARLEAEVFRLAGHPFNLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAV 518 Query: 657 LEQINCGDNPIIKNILEWR 675 LE + +PI++ IL++R Sbjct: 519 LEALREA-HPIVEKILQYR 536 >gi|310640968|ref|YP_003945726.1| 5-3 exonuclease, n-terminal resolvase-like domain protein [Paenibacillus polymyxa SC2] gi|309245918|gb|ADO55485.1| 5-3 exonuclease, N-terminal resolvase-like domain protein [Paenibacillus polymyxa SC2] Length = 298 Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 99/271 (36%), Positives = 144/271 (53%), Gaps = 13/271 (4%) Query: 2 QKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 + E + LVDG + ++RA+YAT + R G+P NAI GF W +Q Sbjct: 4 RNEQSVMLVDGMALLFRAYYATAANGYIRRTKAGVPTNAIYGFIRYFWDAVQTFNP---- 59 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H +D TFR E + YK NR P+ L+PQ L+R T + GIP I +GFEAD Sbjct: 60 THVICCWDMGGTTFRGEHFAAYKGNRADAPDDLIPQFTLIREVTDSLGIPNIGAEGFEAD 119 Query: 119 DIIATYT-YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI----EHVIKKWG 173 D I T + ++ E V I+S D DL+QLV T + K + E ++ + G Sbjct: 120 DCIGTLARHYSQNEDMDVMILSGDHDLLQLVDERTQVIIMKKGHGNYMVYTPETLLSEKG 179 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 + P ++V L+ L GD+ DN PG+ GIG KTA L+QEY ++E IL N ++ R++ I Sbjct: 180 LKPRQVVDLKGLMGDASDNYPGVRGIGEKTALKLVQEYDSIEGILENLDQLTPSVRKK-I 238 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264 + LSRKL + DVP+ L+ +L Sbjct: 239 ESDLDMLHLSRKLAKIHCDVPVACALDSCLL 269 >gi|327439080|dbj|BAK15445.1| 5'-3' exonuclease [Solibacillus silvestris StLB046] Length = 292 Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 97/271 (35%), Positives = 152/271 (56%), Gaps = 23/271 (8%) Query: 6 HLFLVDGSSFIYRAFYATPLLS---RKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFA 62 HL +VDG + ++R+F+A+ ++ R DG P N + GF + QN + +H A Sbjct: 5 HLLIVDGMALLFRSFFASAAMNQFIRLDDGTPSNGVQGFARHVLTA-QNLMQ---PTHLA 60 Query: 63 VIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIA 122 V +D AVTFRN++Y YKANRP PE +LPQ + + ++ G QG EADD+I Sbjct: 61 VCWDMGAVTFRNDLYDGYKANRPAPPEEMLPQFDMAKRVSEMIGWQNFGTQGLEADDLIG 120 Query: 123 TYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL---------YDTVKEEKIDIEHVIKKWG 173 + K+ +T+IS DKDL+QL++P+T + YD E + ++++G Sbjct: 121 SMIK-KWKDDAQITVISGDKDLLQLLNPSTKIAFTKKGYTEYDVYTESRF-----VEEYG 174 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P++ ++A GD+ D PG+ GIG KTA L+Q +G+++ +L +K +R + I Sbjct: 175 IAPKQFAEVKAFMGDTSDGYPGVKGIGPKTALQLIQNHGSIDGVLEALPTLKPGQRIK-I 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264 E RLS +L + DVPI + L+HL L Sbjct: 234 SENLAMLRLSHQLATIHCDVPIDVELDHLAL 264 >gi|266624220|ref|ZP_06117155.1| DNA polymerase I [Clostridium hathewayi DSM 13479] gi|288863948|gb|EFC96246.1| DNA polymerase I [Clostridium hathewayi DSM 13479] Length = 277 Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 157/284 (55%), Gaps = 14/284 (4%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 M KE L L+DG S + RAFY P L+ +GL NA+ GF N+++K+L+ E A H Sbjct: 1 MDKEK-LVLIDGHSIMSRAFYGVPELTNS-EGLHTNAVYGFLNIMFKILE----EEQADH 54 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 AV FD TFR++++ YK R +PE L Q+ L++ A +P + + GFEADDI Sbjct: 55 VAVAFDLKEPTFRHQMFEQYKGTRKPMPEELHEQVDLMKEVLGAMEVPILTMAGFEADDI 114 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVS-------PTTCLYDTVKEEKIDIEHVIKKWG 173 + T ++ +G V ++S D+DL+QL P T T ++ E V ++ Sbjct: 115 LGTVAKESQAKGVEVVVVSGDRDLLQLADEHIKIRIPKTSRGGTEIKDYYP-EDVKNEYH 173 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 + P++ + ++AL GDS DNIPG+P IG KTAA +++ YG++EN + IK + ++++ Sbjct: 174 VTPKEFIDMKALMGDSSDNIPGVPSIGEKTAATIIEAYGSIENAYAHIEEIKPPRAKKSL 233 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLK 277 E A+LS++L + T+ I + + P ++K Sbjct: 234 EENYSLAQLSKELAAINTNCGIEFSYDDAKTDSLYTPAAYQYMK 277 >gi|239827422|ref|YP_002950046.1| 5'-3' exonuclease [Geobacillus sp. WCH70] gi|239807715|gb|ACS24780.1| 5'-3' exonuclease [Geobacillus sp. WCH70] Length = 292 Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 107/298 (35%), Positives = 165/298 (55%), Gaps = 19/298 (6%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 QK L L+DG + ++R+FYAT L DG+P NA+ GF L + + + Sbjct: 3 QKSQKLLLIDGMALLFRSFYATALYGNFMFTSDGIPTNAVYGFVKHLIASVHHIK----P 58 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H +D + TFR E++P YKANR + P L+PQ L + AF IP I + G EAD Sbjct: 59 THVVCCWDMGSATFRTEMFPMYKANRGEPPLELIPQFELAKHVVSAFDIPNIGVLGAEAD 118 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVI------KKW 172 D I T T K+ + I++ D+DL+QL+S T +Y + ++ I H+ K+ Sbjct: 119 DCIGTLTK-QWKDEMDIAILTGDRDLLQLLSETVTVY--LLDKGIGNYHIYTLERFRKEM 175 Query: 173 GIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRREN 232 I P + V ++AL GD+ DN PG+ GIG KTA L+++YG++E IL + + K +R+ Sbjct: 176 EILPSQWVDVKALMGDASDNYPGVRGIGEKTALKLVRQYGSIEGILEHLPLL-TKSQRQK 234 Query: 233 ILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVAT 290 + E+ E LSRKL + D+PI + +E D + ++ ALEF K ++R+ T Sbjct: 235 LQEHEEMLHLSRKLAKIYCDLPIALRIEEAKW-DVDKEKVEQAFLALEF-KGVDRLLT 290 >gi|291532674|emb|CBL05787.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Megamonas hypermegale ART12/1] Length = 215 Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 85/217 (39%), Positives = 131/217 (60%), Gaps = 4/217 (1%) Query: 758 LAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRL 817 +AH+++ F ++ DIH AA++F V I++V+ ++R AK +NF IIYGIS F L Sbjct: 1 MAHMSEDKHFIDAFCHNQDIHTATAAQVFKVPIDEVTSELRGKAKAVNFGIIYGISAFGL 60 Query: 818 ATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKS 877 A L I EA +YI Y G+ ++ + Q+G+V T+FGRR + I S Sbjct: 61 AKNLHISPKEAGEYIDNYLQECSGVKNFMHEIVEKAHQDGFVTTLFGRRRYLPAIKSSNF 120 Query: 878 SIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEI 937 + R + ER A+N PIQG+AADI + AM +++++ KL +++LLQ+HDELV EV +EEI Sbjct: 121 NQRALAERMAMNTPIQGTAADIIKIAMNRASEAIKEAKLKSRILLQVHDELVLEVVKEEI 180 Query: 938 TTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQE 974 S+I+ +M+ +L+VPL ++I NW E Sbjct: 181 EKVSEILTTAMQNTA----SLKVPLIIDINYGKNWAE 213 >gi|333014002|gb|EGK33363.1| DNA polymerase I domain protein [Shigella flexneri K-227] Length = 223 Score = 164 bits (416), Expect = 5e-38, Method: Composition-based stats. Identities = 84/199 (42%), Positives = 122/199 (61%), Gaps = 5/199 (2%) Query: 4 ENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAV 63 +N L LVDGSS++YRA++A P L+ G P A+ G NML L+ + +H AV Sbjct: 6 QNPLILVDGSSYLYRAYHAFPPLTNSA-GEPTGAMYGVLNMLRSLIMQYK----PTHAAV 60 Query: 64 IFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIAT 123 +FD TFR+E++ YK++RP +P+ L Q+ + +A G+P + + G EADD+I T Sbjct: 61 VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGT 120 Query: 124 YTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQ 183 AEK G V I + DKD+ QLV+P L +T+ + E V+ K+G+PPE ++ Sbjct: 121 LAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTILGPEEVVNKYGVPPELIIDFL 180 Query: 184 ALTGDSIDNIPGIPGIGYK 202 AL GDS DNIPG+PG+G K Sbjct: 181 ALMGDSSDNIPGVPGVGEK 199 >gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa] Length = 976 Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 101/309 (32%), Positives = 154/309 (49%), Gaps = 27/309 (8%) Query: 690 NHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISAD 749 + I+ + R+H ++ +T TGRL++ PNLQN P+ KIR AF++ P LI AD Sbjct: 665 DRISCKEGRIHCSLNI-NTETGRLSARTPNLQNQPVLEKDRYKIRHAFVAAPGNTLIVAD 723 Query: 750 YSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIF-----GVNIEKV----SPQ---- 796 Y Q+ELRILAH+ + + F+ D H A ++ V +KV PQ Sbjct: 724 YGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPGQD 783 Query: 797 -------------MRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 RR AK +NFSI YG + L+ ++ EA D +K ++ + Sbjct: 784 KPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVGLSWDWKVSVREARDTLKLWYRDRKEVS 843 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 + +K K F + V T+ GR + + + ERAAINAP+QGSAAD+ A Sbjct: 844 AWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAGPGQKGHVERAAINAPVQGSAADVAMCA 903 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLK 963 M+ + ++ +L ++LLQ+HDE++ E P E A I+V M K L+V L Sbjct: 904 MLEIERNARLKELGWRLLLQVHDEVILEGPTESAEEAKTIVVECMSKPFYGTNILKVDLA 963 Query: 964 VNIKVSNNW 972 V+ K + +W Sbjct: 964 VDAKYAKSW 972 >gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7] gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7] Length = 2016 Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 144/537 (26%), Positives = 279/537 (51%), Gaps = 41/537 (7%) Query: 447 KEILSYLKKFFENEHFLKIGHNIKYD-KLVLHRYGISMRGFEDIMLMSYVLDSGRSSHD- 504 K+IL L+K EN++ +KI N K+D K +LH + D + S +LD ++ + Sbjct: 1506 KDILDGLRKVLENKNIIKIIQNGKFDAKFLLHN-NFKIENIFDTYIASKLLDKNKNMYGF 1564 Query: 505 -IASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 + +I +K+L+ + K +++S+ + + ++ +A +S+ +L+L+ L+ ++ E Sbjct: 1565 KLNNIVEKYLNVI---LDKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKEEIKKE 1621 Query: 564 KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEENIYDLSG--EKF 621 L H+ ++ I + ME+ GI++D + L++ + EI N L++E++ E Sbjct: 1622 NL-HIVNDIENKCILPICDMELNGIKVDLENLQKSTNEIL-NELNIEKDNLKKKLKDENI 1679 Query: 622 NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKIK 681 N++S +Q+ K + + + + D N ++ I ++ +R+L K+ Sbjct: 1680 NVNSQQQV-----LKALQKNNVRDISNKLIENTSDSNLKNFLNHEEIISLRNYRRLYKLY 1734 Query: 682 STYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPP 741 S + LP HIN +T ++HT ++ T +GR +S +PNLQ IP + + IR FI Sbjct: 1735 SAFYLKLPLHINTKTNKIHTTFNQLKTFSGRFSSEKPNLQQIPRQ----KNIREIFIPND 1790 Query: 742 TKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHA 801 I AD+ QIEL+I A I + + + N++D+H + A+ I NI ++ + R A Sbjct: 1791 NNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKNIPDINKEDRHIA 1850 Query: 802 KTINFSIIYGISPFRLAT------QLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQ 855 K INF +IYG++ L L + + + +F + GI+++ N V+Q Sbjct: 1851 KAINFGLIYGMNYVNLKNYANTYYGLNMSLDQCLYFYNSFFEHYKGIYKW----HNQVKQ 1906 Query: 856 NGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHK 915 R + Y +++ K + A+N P+QG+ ADI + A++ ++ +L+D Sbjct: 1907 --------KRALQYSTLSNRKVIFPYFSFTKALNYPVQGTCADILKLALVDLYDNLKD-- 1956 Query: 916 LATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNW 972 + K++L +HDE++ EV ++ A +I+V SME + + +V +V++K++ NW Sbjct: 1957 INGKIILCVHDEIIIEVNKKFQEEALKILVQSMENSASYFLK-KVKCEVSVKIAENW 2012 >gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium 3_1_46FAA] Length = 723 Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 145/582 (24%), Positives = 267/582 (45%), Gaps = 71/582 (12%) Query: 456 FFENEHFLKIGHNIKYD-KLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWL 513 + N+ I HNIK+D K++ +G + + D + S+VL+ H + + K++ Sbjct: 145 YLANKDLKCINHNIKFDDKMITFNWGQRIANVWWDTNIASWVLNEN-EKHGLKPLYNKYI 203 Query: 514 --SYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQLWLL-------LRP---KLI 561 E IP + I ++ +I +N + W L L P + Sbjct: 204 LNGEGSDEDFGDLFEGIPCNYIP---IEIFSIYGANDGFKTWALYQFQKQYLNPEAKRAD 260 Query: 562 VEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNL-----------LSLE 610 KL V+ ++ P+IDV ME+ G++I +D K++S + ++ + E Sbjct: 261 YRKLYDVFMNVEMPLIDVCMDMELRGVEIREDYAKELSVKFNEEMQEKEALCDAYVREFE 320 Query: 611 ENIYD--------LSGEKFNLSSPKQLGDILF-------TKLKFPSGAKTKTGQWKTTAQ 655 E I + K N +SP+Q+ +L+ K P G K Q Sbjct: 321 EYIKENATLMRLTKGTCKINYNSPQQMACLLYDIFQLKSVSRKEPRGTGDKIIQMHRNKA 380 Query: 656 DLEQINCGDNPI--IKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRL 713 G+ I + N +++ K+ TY D +P ++T VHT ++ +TGR Sbjct: 381 KKAGTKKGERFIEFLDNYQRYKECGKLLGTYIDKIPAVKCEKTNAVHTTFNQYGAVTGRF 440 Query: 714 ASLEP----NLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQ 769 +S + NLQNIP + IR+ F + KL+ D+SQIE R+LA+ + + Sbjct: 441 SSSDTVTKINLQNIPSHE---KSIRKIFKARDGYKLVGGDFSQIEPRVLAYFSGDEAMQN 497 Query: 770 VFENSLDIHRMVAAEIFGVNIEK---------VSPQMRRHAKTINFSIIYGISPFRLATQ 820 ++ D++ ++ ++++GV E V+P+ +H +T S++ GI R A Sbjct: 498 AYKEGKDLYAIMGSKVYGVPYEDCREFYPDGTVNPE-GKHRRTTMKSVLLGIMYERGAQA 556 Query: 821 LRIPRSEAADYIKR----YFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPK 876 + ++A + ++ ++ FP + + K + + GYV TI GR+ ++ Sbjct: 557 IGEQFDKSAQWAQKLIDDFYKSFPKVQQLRLKIEKTAEEYGYVTTIKGRKRRLPDMQLSN 616 Query: 877 SSIRNINE--RAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPE 934 E R ++N+ IQGS+ADI + AMI +++ +L M++ +HDEL+ EVPE Sbjct: 617 HDDYRYAEAHRQSLNSVIQGSSADIMKLAMIEIYRDPRYKELDCHMIITVHDELIMEVPE 676 Query: 935 EEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 + ++++V +M++ I+L P+ V+ +V+ W EN Sbjct: 677 ANVKVGAELLVSTMKRVGHSLIDL--PMSVDAEVNEYWYGEN 716 >gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1] gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1] Length = 765 Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 113/362 (31%), Positives = 179/362 (49%), Gaps = 42/362 (11%) Query: 572 LDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEE------NIYDLSGEKF---- 621 ++ P + V MEI GI++D DL K++SA+ + +EE N YD ++F Sbjct: 268 IEMPTVPAVLDMEIKGIKLDLDLNKKLSAKYRQKKAEVEEKLKIEFNKYDKEFKEFKIKH 327 Query: 622 -----------NLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQINCGDNPIIKN 670 N+SSPKQLG + L + K + T D+ + D P+ K Sbjct: 328 PDLASRLSNPINISSPKQLGIFFYDMLGLKPVDREKP---RGTGADI--LGKFDVPVAKL 382 Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLG 730 ILE+R+L K+ TY D LP ++KRT ++H ++ T+TGR +S PNLQNIP Sbjct: 383 ILEYRELDKLLGTYIDKLPTVLSKRTGKIHCTFNQYGTVTGRFSSDSPNLQNIPSHN--- 439 Query: 731 QKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNI 790 + IR+ FI LI DYSQ E R LAH++ + + ++N DI+ +A+ ++ V Sbjct: 440 KDIRKMFIPDDGNILIGGDYSQQEPRSLAHMSGDEKMIKAYKNGKDIYATIASYVYKVPY 499 Query: 791 EK------------VSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHR 838 E+ + Q R + K + IIYG +A +L + + EA I +F Sbjct: 500 EECLEFNPDGTTNTIGKQRRSNLKGVVLGIIYGRGVNSIAEKLNLTKKEAQSIIDEFFTL 559 Query: 839 FPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAIN-APIQGSAA 897 FP + ++ E + R+ GYV T+ GRR +IN P+ + ++ + N P +A Sbjct: 560 FPKVKQFTEDSIRMARELGYVTTLSGRRRRLPDINLPRYEFKYKDKSTSDNFNPFFDTAD 619 Query: 898 DI 899 D+ Sbjct: 620 DV 621 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 4/93 (4%) Query: 884 ERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQI 943 ER +N+ IQGSAAD+T+ AMI++H + +L ML+Q+HDE++ + P + + I Sbjct: 673 ERQCVNSRIQGSAADMTKIAMIALHNNKRLKELGYCMLIQVHDEIIGQCPIDVVKEVKPI 732 Query: 944 IVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 +E L + L VP+ V+I ++ W E+ Sbjct: 733 ----LESCMLNAVKLVVPMSVDIDITKCWYGES 761 >gi|258539932|ref|YP_003174431.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705] gi|257151608|emb|CAR90580.1| DNA polymerase I [Lactobacillus rhamnosus Lc 705] Length = 690 Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 110/299 (36%), Positives = 162/299 (54%), Gaps = 17/299 (5%) Query: 1 MQKENHLFLVDGSSFIYRAFYAT-PLLSR--KHDGLPVNAIAGFCNMLWKLLQNSRKESI 57 M + L L+DG+S +RAF+A L R DGL NAI F NML +L++ + ++ Sbjct: 1 MTSQTKLLLIDGNSIAFRAFFALYNQLDRFTNQDGLHTNAIYAFNNMLEIVLKSVKPDAA 60 Query: 58 ASHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEA 117 V FD TFR Y DYK+ R K P LL QLP ++ GI E++ +EA Sbjct: 61 L----VAFDAGKTTFRTAKYADYKSGRAKTPSELLEQLPYIKELLDDMGIQHYELKDYEA 116 Query: 118 DDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWG 173 DDII T A+ G+ TI++ D+DL QL + T + TVK E EHV +K G Sbjct: 117 DDIIGTMAKRADDAGWQTTIVTGDRDLTQLTTDQTTVQVTVKGVNELEAYTPEHVKEKLG 176 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 I P +++ L+ L GD+ DN PG+ +G KTA LL++YG++EN+ N +K K +EN+ Sbjct: 177 ITPTQIIDLKGLMGDTSDNYPGVTKVGEKTALKLLKQYGSIENLYANIDAMKTSKMKENL 236 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGP---RLISFLKALEFTKLINRVA 289 + + A LS++L + D P+TI L + NGP +L F + L+ ++ Sbjct: 237 INDKDKAYLSKQLATIDRDAPVTIDLADV---KYNGPDLAKLRDFYTKMNMNSLLKKIG 292 Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 93/269 (34%), Positives = 152/269 (56%), Gaps = 23/269 (8%) Query: 477 HRYGISMRGFE-DIMLMSYVLDSGRSSHDIASIAQK--WLSYTRKEIL--KSRKSSIPID 531 HR G+ + D++L SY+++ +S+D+ IA+ + R E + K K +P D Sbjct: 387 HRLGLHLPDIAFDVLLASYLINPDENSNDLGKIAEDHDYHDLPRDEDVYGKGAKRQVPED 446 Query: 532 KISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQID 591 K+ + E S + L L L ++ ++ ++ P+ V+++MEI GI ++ Sbjct: 447 KL----LFEQFARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEMEIQGITLN 502 Query: 592 QDLLKQVSAEISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWK 651 LK + E S+++ LEE IY +G KFNL+SPKQLG++LF KL P KTKTG + Sbjct: 503 AQTLKDMGTEFSQSIKVLEEKIYGEAGVKFNLNSPKQLGEVLFEKLNLPVIKKTKTG-YS 561 Query: 652 TTAQDLEQINCGDNPIIKNILEWRQLSKIKSTYADSL-----PNHINKRTQRVHTFYSLA 706 T+ L ++ +PI+++IL++R +K+ STY L P+H ++HT Y Sbjct: 562 TSVDVLNELKSA-SPIVQDILDYRGWAKLNSTYVVGLLKAQMPDH------KIHTRYLQT 614 Query: 707 STMTGRLASLEPNLQNIPIKTDLGQKIRR 735 T TGRL+S++PN+QNIP + D G+ IR+ Sbjct: 615 LTQTGRLSSVDPNMQNIPAR-DEGKIIRK 642 >gi|149919308|ref|ZP_01907790.1| DNA polymerase I [Plesiocystis pacifica SIR-1] gi|149819808|gb|EDM79232.1| DNA polymerase I [Plesiocystis pacifica SIR-1] Length = 315 Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats. Identities = 98/268 (36%), Positives = 143/268 (53%), Gaps = 11/268 (4%) Query: 2 QKENHLFLVDGSSFIYRAFYAT-PLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 Q + +FLVD ++ ++R ++A+ P + P+NA+ + + L R + Sbjct: 12 QAGDRVFLVDANNLVHRLYHASAPRFAPNDQSTPINAVIAWGQRMRAL----RLGHDPAF 67 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 IFD P ++R + PDYKA R P+ L Q + +QA G+ + G EADD+ Sbjct: 68 LLPIFDGPGDSWRRALAPDYKAKRKGQPDELRGQWEPIWHLSQALGLSPLHQPGLEADDL 127 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLV-----SPTTCL-YDTVKEEKIDIEHVIKKWGI 174 I Y + VTI+S D DLMQLV P + D +++ V K+G+ Sbjct: 128 IGAYANACVEAELEVTIVSNDSDLMQLVRGPDRGPGSVRQLDAFTGKRVGPVQVEAKFGV 187 Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 PPE++ L ALTG D +PGIPGIG K A LL YG+LE +L NA+ I Q+KR E IL Sbjct: 188 PPERLAELFALTGSKGDGVPGIPGIGPKIATELLATYGSLEGVLDNAALIPQRKRSERIL 247 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHL 262 + + ARLS +L LR P+ +PL+ L Sbjct: 248 AHRDDARLSLQLTALRVGEPLPLPLDEL 275 >gi|218678024|ref|ZP_03525921.1| DNA polymerase I [Rhizobium etli CIAT 894] Length = 143 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/143 (60%), Positives = 112/143 (78%) Query: 145 MQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTA 204 MQLV+ +YD++K+++I I V++KWG+PPEKM+ LQA+TGDS+DN+PGIPGIG KTA Sbjct: 1 MQLVTSNVHMYDSMKDKQIGIPDVVEKWGVPPEKMIDLQAMTGDSVDNVPGIPGIGPKTA 60 Query: 205 ALLLQEYGNLENILINASRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIPLEHLIL 264 A LL+EYG+L+ +L A+ IKQ KRRE IL E ARLSR+LV LRTDVP+ + L+ L+L Sbjct: 61 AQLLEEYGDLDTLLDRAAEIKQVKRRETILANIEMARLSRELVRLRTDVPLDLDLDALVL 120 Query: 265 EDCNGPRLISFLKALEFTKLINR 287 E NGP+LI FLK +EFT L R Sbjct: 121 EPQNGPKLIGFLKTMEFTTLTRR 143 >gi|16803920|ref|NP_465405.1| hypothetical protein lmo1881 [Listeria monocytogenes EGD-e] gi|224500233|ref|ZP_03668582.1| hypothetical protein LmonF1_11349 [Listeria monocytogenes Finland 1988] gi|224501320|ref|ZP_03669627.1| hypothetical protein LmonFR_02155 [Listeria monocytogenes FSL R2-561] gi|254827235|ref|ZP_05231922.1| 5'-3' exonuclease [Listeria monocytogenes FSL N3-165] gi|254831519|ref|ZP_05236174.1| hypothetical protein Lmon1_09198 [Listeria monocytogenes 10403S] gi|254899423|ref|ZP_05259347.1| hypothetical protein LmonJ_06404 [Listeria monocytogenes J0161] gi|254912438|ref|ZP_05262450.1| DNA polymerase I [Listeria monocytogenes J2818] gi|254936765|ref|ZP_05268462.1| 5'-3' exonuclease [Listeria monocytogenes F6900] gi|284802326|ref|YP_003414191.1| hypothetical protein LM5578_2082 [Listeria monocytogenes 08-5578] gi|284995468|ref|YP_003417236.1| hypothetical protein LM5923_2033 [Listeria monocytogenes 08-5923] gi|16411334|emb|CAC99959.1| lmo1881 [Listeria monocytogenes EGD-e] gi|258599618|gb|EEW12943.1| 5'-3' exonuclease [Listeria monocytogenes FSL N3-165] gi|258609361|gb|EEW21969.1| 5'-3' exonuclease [Listeria monocytogenes F6900] gi|284057888|gb|ADB68829.1| hypothetical protein LM5578_2082 [Listeria monocytogenes 08-5578] gi|284060935|gb|ADB71874.1| hypothetical protein LM5923_2033 [Listeria monocytogenes 08-5923] gi|293590421|gb|EFF98755.1| DNA polymerase I [Listeria monocytogenes J2818] Length = 290 Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/268 (35%), Positives = 149/268 (55%), Gaps = 13/268 (4%) Query: 2 QKENHLFLVDGSSFIYRAFYATPLLSR---KHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 + +L +VDG + ++RAFYAT + + G+P N + GF ++ + ++S Sbjct: 3 ENRENLLVVDGMALLFRAFYATAVSKQFMFNQQGIPTNGVQGFMRHMFAAI----RQSNP 58 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H + +D + TFRNE+Y YKA R PE ++PQ L + FG + + GFEAD Sbjct: 59 THTLICWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEAD 118 Query: 119 DIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKE----EKIDIEHVIKKWGI 174 D I T T A A T++S DKDL+QL++PT ++ K ++ D ++ GI Sbjct: 119 DCIGTITVQASNT-IATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFFEEMGI 177 Query: 175 PPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENIL 234 P + + ++AL GD+ D PG+ GIG KTA L+QEY ++E +L N ++K ++ + I Sbjct: 178 SPRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEYESIEGVLNNLDKLKPAQQTK-IQ 236 Query: 235 EYAETARLSRKLVMLRTDVPITIPLEHL 262 E LS+KL + T+VP+ I L L Sbjct: 237 EDLAMLELSQKLARIHTEVPLEIDLPSL 264 >gi|157325093|ref|YP_001468518.1| gp138 [Listeria phage A511] gi|66733101|gb|AAY52919.1| gp138 [Listeria phage A511] Length = 730 Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 169/318 (53%), Gaps = 14/318 (4%) Query: 671 ILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKT--- 727 +LE + K+ + L N I+ + RVH ++ T T RL+S PN+Q +P KT Sbjct: 353 LLEHSLVKTRKNNFTAKLLNFISNKDGRVHGSFNATGTETTRLSSNNPNMQQLPAKTSNP 412 Query: 728 ---DLGQKIRRAFISP-PTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAA 783 D I+R F + L+ DYS +E+RILA A + Q F + D+H+ A+ Sbjct: 413 KRFDYQYPIKRMFQTAFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETAS 472 Query: 784 EIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFPGIH 843 ++G+ ++KV + R+ AK +NF I YG +PF A + + EA D +RYF P I Sbjct: 473 IVWGMPVDKVPAEFRKKAKAVNFGIAYGETPFSFAPKHDMSVEEAEDIFQRYFANKPNIK 532 Query: 844 EYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRA 903 +I++T ++G+V+T+ G R + S I+N R ++N IQG+ A T + Sbjct: 533 TFIDETHREALRDGFVDTLQGHRRLIRDAFSKDKQIQNGALRKSVNTKIQGTGAYCTNMS 592 Query: 904 MISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINL----- 958 +I + + ++D+ + +K++L +HD +V + P EEI +++ ME + +++ Sbjct: 593 LIYIDQYIQDNNMKSKLVLTVHDSIVVDCPPEEIEIMARVCKTIMENLPIDFLSIEWKGE 652 Query: 959 --RVPLKVNIKVSNNWQE 974 + P++ +I++ N+ + Sbjct: 653 KTKYPIEADIEIGTNYND 670 >gi|189218501|ref|YP_001939142.1| 5'-3' exonuclease [Methylacidiphilum infernorum V4] gi|189185359|gb|ACD82544.1| 5'-3' exonuclease [Methylacidiphilum infernorum V4] Length = 296 Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 103/287 (35%), Positives = 165/287 (57%), Gaps = 13/287 (4%) Query: 6 HLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIF 65 L LVDG+ + +R+FYA P L+ + G P NA+ G +L +LL + + E AV+F Sbjct: 2 RLVLVDGNYYAFRSFYAMPSLATRS-GEPTNALYGLTMVLRRLLSDLKPE----LGAVVF 56 Query: 66 DYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYT 125 D R + DYKANRP+IP L QLP ++ +A G+ IE++G EADD+IA+YT Sbjct: 57 DGGLPAERLALRADYKANRPEIPSALKSQLPWIKKLVKALGLCPIEVEGQEADDVIASYT 116 Query: 126 YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI---EHVIKKWGIPPEKMVCL 182 A ++G V + ++DKDLM LV +Y TV++++ + + +KW + P ++ + Sbjct: 117 KKAVEKGIDVVLATSDKDLMSLVGEHVRVY-TVEKKRFKLLGQREIEEKWSVKPSQIPDV 175 Query: 183 QALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETARL 242 AL GDS+DNIPG+ GIG KTA + +YG+L + L+ A I ++ + + E E + Sbjct: 176 LALIGDSVDNIPGVEGIGKKTATKWIIQYGSLFS-LLQARDIPDRRFAKLLEENKERIMI 234 Query: 243 SRKLVMLRTDVPITIPLEHL-ILEDCNGPRLISFLKALEFTKLINRV 288 + K++ L+ ++ + +P+E L I+ D + EF KL V Sbjct: 235 NWKMLELKDNIELPLPIEELRIVPDYEAQE--KLFEKFEFKKLAQEV 279 >gi|308068174|ref|YP_003869779.1| 5'-3' exonuclease [Paenibacillus polymyxa E681] gi|305857453|gb|ADM69241.1| Probable 5'-3' exonuclease [Paenibacillus polymyxa E681] Length = 298 Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 98/271 (36%), Positives = 143/271 (52%), Gaps = 13/271 (4%) Query: 2 QKENHLFLVDGSSFIYRAFYATP---LLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIA 58 + E + LVDG + ++RA+YAT + R G+P NAI GF W +Q Sbjct: 4 RNEQSVMLVDGMALLFRAYYATAANGYIRRTKAGVPTNAIYGFIRYFWDAVQTFNP---- 59 Query: 59 SHFAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEAD 118 +H +D TFR E + YK NR P+ L+PQ L+R T + GIP I +GFEAD Sbjct: 60 THVICCWDMGGTTFRGEHFAAYKGNRADAPDDLIPQFTLIREVTDSLGIPNIGAEGFEAD 119 Query: 119 DIIATYT-YIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDI----EHVIKKWG 173 D I T + ++ E V I+S D DL+QLV T + K + E ++ + G Sbjct: 120 DCIGTLARHYSQNEDMDVMILSGDHDLLQLVDERTRVIIMKKGHGNYMVYTPETLLTEKG 179 Query: 174 IPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENI 233 + P ++V L+ L GD+ DN PG+ GIG KTA L+QEY ++E IL N ++ R++ I Sbjct: 180 LKPRQVVDLKGLMGDASDNYPGVRGIGEKTALKLVQEYDSIEGILENLDQLTPSVRKK-I 238 Query: 234 LEYAETARLSRKLVMLRTDVPITIPLEHLIL 264 + LSRKL + VP+ L+ +L Sbjct: 239 ESDLDMLHLSRKLAEIHCGVPVACALDSCLL 269 >gi|308803633|ref|XP_003079129.1| DNA polymerase I (ISS) [Ostreococcus taur