>gnl|CDD|28961 cd00080, HhH2_motif, Helix-hairpin-helix class 2 (Pol1 family) motif. HhH2 domains are found in Rad2 family of prokaryotic and eukaryotic replication and repair nucleases, i.e., DNA polymerase I, Taq DNA polymerase, DNA repair protein Rad2 endonuclease, flap endonuclease, exonuclease I and IX, 5'-3' exonuclease and also bacteriophage Rnase H. These nucleases degrade RNA-DNA or DNA-DNA duplexes, or both and play essential roles in DNA duplication, repair, and recombination.. Length = 75

 Score = 78.4 bits (193), Expect = 8e-15
 Identities = 41/78 (52%), Positives = 54/78 (69%), Gaps = 3/78 (3%)

Query: 170 KKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKR 229
           +K G+ PE+ + L  L GD  DNIPG+PGIG KTA  LL+EYG+LEN+L N  +IK    
Sbjct: 1   EKLGLTPEQFIDLAILVGDKSDNIPGVPGIGPKTALKLLKEYGSLENLLENLDKIKL--- 57

Query: 230 RENILEYAETARLSRKLV 247
           RE +LE+ E A+LS+ L 
Sbjct: 58  REKLLEHKELAKLSKLLA 75