BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] (976 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 2008 bits (5203), Expect = 0.0, Method: Compositional matrix adjust. Identities = 976/976 (100%), Positives = 976/976 (100%) Query: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH Sbjct: 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASH 60 Query: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI Sbjct: 61 FAVIFDYPAVTFRNEIYPDYKANRPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDI 120 Query: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV Sbjct: 121 IATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCLYDTVKEEKIDIEHVIKKWGIPPEKMV 180 Query: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA Sbjct: 181 CLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRRENILEYAETA 240 Query: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE Sbjct: 241 RLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISFLKALEFTKLINRVATTYDCDAANIE 300 Query: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ Sbjct: 301 PVVLDINTTENKGIAIETEIDRDTTIKTSQFSSLSDQTSKINSEQTPQKLFLERLQKLSQ 360 Query: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT Sbjct: 361 YPINNDSYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDT 420 Query: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG Sbjct: 421 SFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYG 480 Query: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE Sbjct: 481 ISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQE 540 Query: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA Sbjct: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 Query: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI Sbjct: 601 EISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 Query: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL Sbjct: 661 NCGDNPIIKNILEWRQLSKIKSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNL 720 Query: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM Sbjct: 721 QNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRM 780 Query: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP Sbjct: 781 VAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 Query: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT Sbjct: 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADIT 900 Query: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV Sbjct: 901 RRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRV 960 Query: 961 PLKVNIKVSNNWQEEN 976 PLKVNIKVSNNWQEEN Sbjct: 961 PLKVNIKVSNNWQEEN 976 >gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] Length = 675 Score = 48.1 bits (113), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 40/78 (51%) Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792 +R I+ KKL+ AD + IE R+LA IA + F N DI+ A+ F I+K Sbjct: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 Query: 793 VSPQMRRHAKTINFSIIY 810 VS + R K + ++ Y Sbjct: 424 VSKEQRAIGKVMELALGY 441 >gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] Length = 675 Score = 40.0 bits (92), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792 +R I+ KKL+ AD + IE R+LA +A + FE D++ A F V + Sbjct: 364 VRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFNVAPAQ 423 Query: 793 VSPQMRRHAKTINFSIIY 810 V+ R K + ++ Y Sbjct: 424 VTKDQRAIGKVMELALGY 441 Score = 28.1 bits (61), Expect = 0.78, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 9/73 (12%) Query: 892 IQGSAADITRRAMISVHKSLEDHKLATKMLLQIHDELVFEVPEEEITTASQIIVHSMEKA 951 +Q + DI M++ K+ D ++L +HDE+V E P+ + AS ++ H M Sbjct: 602 VQAVSRDILAEGMMNATKAGYD------IVLTVHDEIVCETPDTDEFNAS-MLYHLMTSN 654 Query: 952 CLPKINLRVPLKV 964 P +PLK Sbjct: 655 --PSWAKGLPLKA 665 >gi|254780562|ref|YP_003064975.1| hypothetical protein CLIBASIA_02245 [Candidatus Liberibacter asiaticus str. psy62] Length = 77 Score = 28.1 bits (61), Expect = 0.66, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Query: 475 VLHRYGISMRGFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKE 519 + H S+R + + V+ SGRS+ +ASIA +SY +K+ Sbjct: 35 ICHIENTSLRSL---ICDNMVIVSGRSTKHVASIADNLISYLKKK 76 >gi|254780353|ref|YP_003064766.1| DNA topoisomerase IV subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 753 Score = 26.2 bits (56), Expect = 2.5, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 32/168 (19%) Query: 495 VLDSGRSSH--DIASIAQKWLSYTRKEILKSRKSSIPIDKISDSQVQEHAIENSNVILQL 552 VL GR + I ++WL++ R+E+L R S + AI+ IL+ Sbjct: 345 VLSMGRVPQVMPLDGILKEWLAH-RREVLFRR-----------SSFRMQAIDRRVEILKG 392 Query: 553 WLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAEISKNLLSLEEN 612 LL L +++++ + DKP +VS+ +T Q+D L ++ ++L LEE Sbjct: 393 --LLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLRL-----RSLRKLEE- 444 Query: 613 IYDLSGEKFNLSSPKQLGDILFTKLKFPSGAKTKTGQWKTTAQDLEQI 660 Y + E NL + K+ D L SG + QW A ++ ++ Sbjct: 445 -YQIKSELDNLLAEKEKIDSLLN-----SGKQ----QWNQIACEIREV 482 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.135 0.381 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 606,223 Number of Sequences: 1233 Number of extensions: 24990 Number of successful extensions: 78 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 68 Number of HSP's gapped (non-prelim): 18 length of query: 976 length of database: 328,796 effective HSP length: 83 effective length of query: 893 effective length of database: 226,457 effective search space: 202226101 effective search space used: 202226101 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 43 (21.2 bits)