HHsearch alignment for GI: 254780278 and conserved domain: PRK07238
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional.
Probab=100.00 E-value=0 Score=360.17 Aligned_cols=196 Identities=28% Similarity=0.386 Sum_probs=176.8
Q ss_pred CCEEEEEECCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCC
Q ss_conf 85899995676111026842047575559898999999999987518884277423322431000112210013321222
Q gi|254780278|r 2 NRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQDTCQIILQEINQQHITPI 81 (212)
Q Consensus 2 ~~~i~liRHGet~~n~~~~~~G~~D~~Lt~~G~~QA~~~~~~l~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~~~~~~~~~ 81 (212)
T Consensus 174 pTrl~LVRHGeT~~N~~~r~qG~~D~pLTe~Gr~QA~~la~~La~~-~~iDaIySSPL~RA~eTAe~Ia~~lg---l~v~ 249 (375)
T PRK07238 174 PTRLLLLRHGQTELSVQRRYSGRGNPELTELGRRQAAAAARYLAGR-GGIDAVVSSPLQRAYDTAEAAAKALG---LDVT 249 (375)
T ss_pred CEEEEEEECCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCC-CCCCEEEECCHHHHHHHHHHHHHHCC---CCCE
T ss_conf 8599998588887655675247999987878999999999998466-99888998973999999999998519---9927
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCEEEECCCHH
Q ss_conf 22101444343101112356886211012001023333211231123565531010012100000233241156468069
Q gi|254780278|r 82 YDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNS 161 (212)
Q Consensus 82 ~~~~L~E~~~G~~eG~~~~e~~~~~~~~~~~~~~~~~~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVsHg~~ 161 (212)
T Consensus 250 ~d~~LrE~dfG~WEG~t~~Ei~~~~Pe~~~~W~-~dp~~~pPgGES~~~v~~Rv~~al~~i~~--~h~G~tVlVVsHggv 326 (375)
T PRK07238 250 VDDDLIETDFGAWEGLTFAEAAERDPELHRRWL-ADTSVAPPGGESFDDVARRVRRARDRIIA--EYPGATVLVVSHVTP 326 (375)
T ss_pred ECHHCCCCCCCCCCCCCHHHHHHHCHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHHHHHHHH--HCCCCCEEEEECHHH
T ss_conf 873101378885358818999877999999876-08899995996899999999999999998--789993999968599
Q ss_pred HHHHHHHHHCCCHHHHHCCCCCCCEEEEEEECCCCC-EE-EEEEC
Q ss_conf 999999985899778632317996199999889996-88-99713
Q gi|254780278|r 162 LRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADAS-IV-SKNIM 204 (212)
Q Consensus 162 ir~l~~~l~~~~~~~~~~~~i~~g~~~i~~~~~~~~-~~-~~~~~ 204 (212)
T Consensus 327 IR~ll~~aLg~p~~~~~r~~ld~aSiSvi~~~~dG~~~lr~~NDt 371 (375)
T PRK07238 327 IKTLLRLALDAGPGVLYRLHLDLASLSIAEFYPDGAASVRLVNDT 371 (375)
T ss_pred HHHHHHHHHCCCHHHHCEEEECCCEEEEEEEECCCCEEEEEEECC
T ss_conf 999999997879889343211686189999957985578887210