RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780278|ref|YP_003064691.1| phosphoglyceromutase
[Candidatus Liberibacter asiaticus str. psy62]
         (212 letters)



>gnl|CDD|30933 COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport
           and metabolism].
          Length = 230

 Score =  234 bits (598), Expect = 2e-62
 Identities = 99/224 (44%), Positives = 132/224 (58%), Gaps = 25/224 (11%)

Query: 3   RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62
            +LVL+RHGQSEWN +NLFTG  +  LT  G+SEA   GKLL ++G+ FD A++S LKRA
Sbjct: 2   MKLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEEGLEFDIAYTSVLKRA 61

Query: 63  QDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP 122
             T  I+L+E +Q  I  I    LNER YG + G+NK +   K+G EQV +WRRSY + P
Sbjct: 62  IKTLNIVLEESDQLWIPVIKSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPP 121

Query: 123 PG-------------------------GESLRDTVARVLAYYVQFILPLILQNKSILVVA 157
           P                           ESL+DTV RVL Y+   I P +   K++L+VA
Sbjct: 122 PKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVERVLPYWEDDIAPNLKSGKNVLIVA 181

Query: 158 HGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201
           HGNSLR+LI  LE I+ +DI  + I TG   VY+L  +  ++S 
Sbjct: 182 HGNSLRALIKYLEGISDEDILDLNIPTGIPLVYELDKNLKVISA 225


>gnl|CDD|35456 KOG0235, KOG0235, KOG0235, Phosphoglycerate mutase [Carbohydrate
           transport and metabolism].
          Length = 214

 Score =  185 bits (470), Expect = 1e-47
 Identities = 77/193 (39%), Positives = 119/193 (61%), Gaps = 3/193 (1%)

Query: 4   RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
           RLVLVRHG+SEWN +N+F G  + PLT  G  +A    + L    + FD  ++S LKRA+
Sbjct: 7   RLVLVRHGESEWNKENIFQGWIDAPLTEKGEEQAKAAAQRLKDLNIEFDVCYTSDLKRAK 66

Query: 64  DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQV-HLWRRS--YSV 120
            T ++IL+E+ Q+ +  +Y   LNER YG + G+NK +   ++G EQV    R S    +
Sbjct: 67  QTAELILEELKQKKVPVLYTWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEI 126

Query: 121 APPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKV 180
             P GESL+D + R+L ++ + I     + K++L+VAHGNSLR+++  LE I+ + I ++
Sbjct: 127 PLPDGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLRAIVKHLEGISDEAIKEL 186

Query: 181 TIGTGEAFVYQLG 193
            + TG   VY+L 
Sbjct: 187 NLPTGVPIVYELD 199


>gnl|CDD|144039 pfam00300, PGAM, Phosphoglycerate mutase family.  Y019_MYCTU and
           YK23_YEAST are not included in the Prosite entry.
           However these sequences are significantly similar and
           contain identical active site residues.
          Length = 155

 Score =  144 bits (365), Expect = 2e-35
 Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 7/162 (4%)

Query: 4   RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
           RL LVRHG++EWN++    G  + PLT  G  +A  +GK L   G+ FD  +SS L RA 
Sbjct: 1   RLYLVRHGETEWNVEGRLQGDTDSPLTEEGREQARALGKRLK--GIPFDRIYSSPLLRAI 58

Query: 64  DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP 123
            T +I+ + +    +  I D  L ERD+G   G+  +++  ++  E            PP
Sbjct: 59  QTAEILAEALG---LPIIVDPRLRERDFGDWEGLTFEEIKAEFPEELRAWLEDPADFRPP 115

Query: 124 GGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSL 165
           GGESL D   RV A   + +        ++L+V+HG  +R+L
Sbjct: 116 GGESLADVYERVEAALEELLAK--HPGGNVLIVSHGGVIRAL 155


>gnl|CDD|132718 cd07067, HP_PGM_like, Histidine phosphatase domain found in
           phosphoglycerate mutases and related proteins, mostly
           phosphatases; contains a His residue which is
           phosphorylated during the reaction.  Subgroup of the
           catalytic domain of a functionally diverse set of
           proteins, most of which are phosphatases. The conserved
           catalytic core of this domain contains a His residue
           which is phosphorylated in the reaction. This subgroup
           contains cofactor-dependent and cofactor-independent
           phosphoglycerate mutases (dPGM, and BPGM respectively),
           fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and
           related proteins. Functions include roles in metabolism,
           signaling, or regulation, for example, F26BPase affects
           glycolysis and gluconeogenesis through controlling the
           concentration of F26BP; BPGM controls the concentration
           of 2,3-BPG (the main allosteric effector of hemoglobin
           in human blood cells); human Sts-1 is a T-cell
           regulator; Escherichia coli Six A participates in the
           ArcB-dependent His-to-Asp phosphorelay signaling system.
           Deficiency and mutation in many of the human members
           result in disease, for example erythrocyte BPGM
           deficiency is a disease associated with a decrease in
           the concentration of 2,3-BPG.
          Length = 153

 Score =  134 bits (339), Expect = 2e-32
 Identities = 59/198 (29%), Positives = 86/198 (43%), Gaps = 48/198 (24%)

Query: 4   RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
           RL LVRHG+SEWN +  F G  + PLT  G  +A  +GK L + G+ FD  +SS LKRA 
Sbjct: 1   RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRAI 60

Query: 64  DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP 123
            T +IIL+E+    +    D  L E                                   
Sbjct: 61  QTAEIILEELP--GLPVEVDPRLRE----------------------------------- 83

Query: 124 GGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVTIG 183
                    ARVL    + I P     K++L+V+HG  LR+L+  L  ++ +DI ++ + 
Sbjct: 84  ---------ARVLPALEELIAP--HDGKNVLIVSHGGVLRALLAYLLGLSDEDILRLNLP 132

Query: 184 TGEAFVYQLGADASIVSK 201
            G   V +L  +   V  
Sbjct: 133 NGSISVLELDENGGGVLL 150


>gnl|CDD|30755 COG0406, GpmB, Fructose-2,6-bisphosphatase [Carbohydrate transport
           and metabolism].
          Length = 208

 Score =  128 bits (321), Expect = 2e-30
 Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 5/195 (2%)

Query: 1   MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLK 60
           M  RL LVRHG++EWN++    G  + PLT  G ++A  + + LA + + FDA +SS LK
Sbjct: 1   MMMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAARDIGFDAIYSSPLK 60

Query: 61  RAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSV 120
           RAQ T + + +E+    +    DD L E D+G   G+  D++  +   E        Y  
Sbjct: 61  RAQQTAEPLAEELG---LPLEVDDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLA 117

Query: 121 APPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKV 180
            PPGGESL D   RV+A   + +        ++LVV+HG  +R+L+  L  + ++++ ++
Sbjct: 118 PPPGGESLADVSKRVVAALAELLRS--PPGNNVLVVSHGGVIRALLAYLLGLDLEELWRL 175

Query: 181 TIGTGEAFVYQLGAD 195
            +      V +    
Sbjct: 176 RLDNASVTVLEFDDG 190


>gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally
           diverse set of proteins, mostly phosphatases; contains a
           His residue which is phosphorylated during the reaction.
            Catalytic domain of a functionally diverse set of
           proteins, most of which are phosphatases. The conserved
           catalytic core of this domain contains a His residue
           which is phosphorylated in the reaction. This set of
           proteins includes cofactor-dependent and
           cofactor-independent phosphoglycerate mutases (dPGM, and
           BPGM respectively), fructose-2,6-bisphosphatase
           (F26BP)ase, Sts-1, SixA, histidine acid phosphatases,
           phytases, and related proteins. Functions include roles
           in metabolism, signaling, or regulation, for example
           F26BPase affects glycolysis and gluconeogenesis through
           controlling the concentration of F26BP; BPGM controls
           the concentration of 2,3-BPG (the main allosteric
           effector of hemoglobin in human blood cells); human
           Sts-1 is a T-cell regulator; Escherichia coli Six A
           participates in the ArcB-dependent His-to-Asp
           phosphorelay signaling system; phytases scavenge
           phosphate from extracellular sources. Deficiency and
           mutation in many of the human members result in disease,
           for example erythrocyte BPGM deficiency is a disease
           associated with a decrease in the concentration of
           2,3-BPG. Clinical applications include the use of
           prostatic acid phosphatase (PAP) as a serum marker for
           prostate cancer. Agricultural applications include the
           addition of phytases to animal feed.
          Length = 153

 Score =  119 bits (300), Expect = 5e-28
 Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 48/189 (25%)

Query: 4   RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
            L LVRHG+ E N +  FTG  + PLT  G  +A E+GK L ++ + FD  +SS LKRA 
Sbjct: 1   VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRERYIKFDRIYSSPLKRAI 60

Query: 64  DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP 123
            T +IIL+ +  + +    D                                        
Sbjct: 61  QTAEIILEGLF-EGLPVEVDPR-------------------------------------- 81

Query: 124 GGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVTIG 183
                    ARVL   ++ +   +L  K++L+V+HG ++R+L+  L  ++ ++I  + + 
Sbjct: 82  ---------ARVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALLGLSDEEILSLNLP 132

Query: 184 TGEAFVYQL 192
            G   V +L
Sbjct: 133 NGSILVLEL 141


>gnl|CDD|35455 KOG0234, KOG0234, KOG0234, Fructose-6-phosphate
           2-kinase/fructose-2,6-biphosphatase [Carbohydrate
           transport and metabolism].
          Length = 438

 Score = 56.5 bits (136), Expect = 5e-09
 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 18/183 (9%)

Query: 3   RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62
           R + L RHG+SE+N++    G    PL+  G   A  + K + +Q       ++S  KR 
Sbjct: 240 RTIYLTRHGESEFNVEGRIGGDS--PLSERGSQYAKSLIKFVEEQSSSDLDVWTSQRKRT 297

Query: 63  QDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP 122
             T + +  + + +        AL+E D G   G+  +++   +  E     +  Y    
Sbjct: 298 IQTAEGLKLDYSVEQWK-----ALDEIDAGVCEGLTYEEIETNYPEEFALRDKDKYRYRY 352

Query: 123 PGGESLRDTVARVLAYYVQFILPLI--LQNKS-ILVVAHGNSLRSLIMVLEKITVDDIPK 179
           PGGES  D V R        + P+I  L+ +  +LV+ H   +R L+      +  ++P 
Sbjct: 353 PGGESYSDLVQR--------LEPVIMELERQENVLVITHQAVIRCLLAYFLNCSPVELPY 404

Query: 180 VTI 182
           +T+
Sbjct: 405 LTV 407


>gnl|CDD|32245 COG2062, SixA, Phosphohistidine phosphatase SixA [Signal
          transduction mechanisms].
          Length = 163

 Score = 53.0 bits (127), Expect = 6e-08
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 3  RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62
           RL L+RHG++EW    +    R  PLT  G  EA  +   LA QG+  D    S   RA
Sbjct: 2  MRLYLMRHGKAEWAAPGIADFDR--PLTERGRKEAELVAAWLAGQGVEPDLVLVSPAVRA 59

Query: 63 QDTCQIILQEINQQ 76
          + T +I+ + + ++
Sbjct: 60 RQTAEIVAEHLGEK 73


>gnl|CDD|39809 KOG4609, KOG4609, KOG4609, Predicted phosphoglycerate mutase
           [General function prediction only].
          Length = 284

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 3   RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62
           R + L+RHG+          G     LT +G  +A   GK LA+ G+ FD   +S++ RA
Sbjct: 95  RHIFLIRHGEY------HVDG-SLEHLTELGREQAELTGKRLAELGLKFDKVVASTMVRA 147

Query: 63  QDTCQIILQEINQ 75
            +T  IIL+ +  
Sbjct: 148 TETADIILKHLPD 160


>gnl|CDD|38938 KOG3734, KOG3734, KOG3734, Predicted phosphoglycerate mutase
           [Carbohydrate transport and metabolism].
          Length = 272

 Score = 35.7 bits (82), Expect = 0.009
 Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 27/214 (12%)

Query: 1   MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSS-SL 59
           MN    L +  +S            +PP+T  G  +   IG+ L   G+  D  F S SL
Sbjct: 48  MNMPFRLPQRIRSPKGYPI------DPPITVSGFIQCKLIGRELLNAGIAIDVIFCSPSL 101

Query: 60  KRAQDTCQIILQEINQQHITPIYDDALNE-----RDYGHIAGMNKDDVCNKWGAEQV-HL 113
           +  Q   +I      ++ +    +  L E     +D      ++ D++        V   
Sbjct: 102 RCVQTAAKIKKGLGIEKKLKIRVEPGLFEPEKWPKDGKFPFFISPDELKFPGF--PVDLN 159

Query: 114 WRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQ--NKSILVVAHGNSL----RSLIM 167
           +   Y   P  GESL D   R      +    +  +  N+++L+VAHG+S+      L  
Sbjct: 160 YDPVYKETPRWGESLEDCNDR----IQKVFKAIADKYPNENLLIVAHGSSVDTCSAQLQG 215

Query: 168 VLEKITVD--DIPKVTIGTGEAFVYQLGADASIV 199
           +  +  VD   I + T     A + +      +V
Sbjct: 216 LPVRYRVDFCQIVEPTPQLSFASLSEKTGYWELV 249


>gnl|CDD|39951 KOG4754, KOG4754, KOG4754, Predicted phosphoglycerate mutase
           [Carbohydrate transport and metabolism].
          Length = 248

 Score = 32.3 bits (73), Expect = 0.10
 Identities = 41/205 (20%), Positives = 67/205 (32%), Gaps = 42/205 (20%)

Query: 5   LVLVRHGQSEWNIKN-------LFTGLRNPPLTSIGMSEANEIGKLL-AKQ-GMVFDAAF 55
           + LVRHGQ   N+               +P LT +G  + + + K L AKQ     +   
Sbjct: 17  IYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQLPNKIELIV 76

Query: 56  SSSLKRAQDTCQIILQEI---NQQHITPIY--------------DDALNERDYGHIAGMN 98
            S ++R   T  I        + +   P+               D   + R    +  + 
Sbjct: 77  VSPMRRTLQTMVIAFGGYLAEDGEDPAPVKVSPPFIAVCRETLGDHPCDRRSS--VTDLM 134

Query: 99  KDDVCNKWGAEQVH---LWRRSYSVAPPGGESLRDTVARVLAYYVQFILPL-ILQNKSIL 154
           K      +   +     L +  Y          R+      A   +F+  L     K I 
Sbjct: 135 KLFPAYDFSLCETDVDPLKKPDY----------REDDEESAARSREFLEWLAKRPEKEIA 184

Query: 155 VVAHGNSLRSLIMVLEKITVDDIPK 179
           VV H   LRSL+  ++K    D+  
Sbjct: 185 VVTHSGFLRSLLKKIQKDCDPDVKP 209


>gnl|CDD|30485 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid
           transport and metabolism].
          Length = 334

 Score = 31.0 bits (70), Expect = 0.28
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 29  LTSIGMSEANEIGKLLAKQGM-VFDAAFSSSLKRAQDTCQIILQEINQQHI 78
             + G S + E+    A+ G  V D    SS  R      +++ E+N +H+
Sbjct: 71  FFAAGGSVSKEVEPKAAEAGCVVIDN---SSAFRMDPDVPLVVPEVNPEHL 118


>gnl|CDD|132717 cd07061, HP_HAP_like, Histidine phosphatase domain found in
           histidine acid phosphatases and phytases; contains a His
           residue which is phosphorylated during the reaction.
           Catalytic domain of HAP (histidine acid phosphatases)
           and phytases (myo-inositol hexakisphosphate
           phosphohydrolases). The conserved catalytic core of this
           domain contains a His residue which is phosphorylated in
           the reaction. Functions in this subgroup include roles
           in metabolism, signaling, or regulation, for example
           Escherichia coli glucose-1-phosphatase functions to
           scavenge glucose from glucose-1-phosphate and the
           signaling molecules inositol 1,3,4,5,6-pentakisphosphate
           (InsP5) and inositol hexakisphosphate (InsP6) are in
           vivo substrates for eukaryotic multiple inositol
           polyphosphate phosphatase 1 (Minpp1). Phytases scavenge
           phosphate from extracellular sources and are added to
           animal feed while prostatic acid phosphatase (PAP) has
           been used for many years as a serum marker for prostate
           cancer. Recently PAP has been shown in mouse models to
           suppress pain by functioning as an
           ecto-5prime-nucleotidase. In vivo it dephosphorylates
           extracellular adenosine monophosphate (AMP) generating
           adenosine,and leading to the activation of A1-adenosine
           receptors in dorsal spinal cord.
          Length = 242

 Score = 28.5 bits (64), Expect = 1.3
 Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 35/129 (27%)

Query: 6   VLVRHGQSEWNIKNLFTGLRNP-PLTSIGMSEANEIGKLLAK--QGMVFDA--------A 54
           VL RHG             R P  LT  G  +A E+G+   +    ++            
Sbjct: 7   VLSRHGD------------RYPGELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYI 54

Query: 55  FSSSLKRAQDTCQIIL---------QEINQQHITPIYDDALNERD---YGHIAGMNKDDV 102
            SS  +R   + Q  L         Q I    I    DD  N  D   Y  +A       
Sbjct: 55  RSSDSQRTLQSAQAFLAGLFPPDGWQPIAVHTIPEEEDDVSNLFDLCAYETVAKGYSAPF 114

Query: 103 CNKWGAEQV 111
           C+ +  E+ 
Sbjct: 115 CDLFTEEEW 123


>gnl|CDD|37405 KOG2194, KOG2194, KOG2194, Aminopeptidases of the M20 family
           [Posttranslational modification, protein turnover,
           chaperones, General function prediction only].
          Length = 834

 Score = 28.4 bits (63), Expect = 1.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)

Query: 66  CQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKW 106
              + +E+ Q  I P   D    R+YGH+ G++   V N +
Sbjct: 256 ASTLGEELFQSGIIPSDTDFRIFREYGHLPGLDMAFVKNGY 296


>gnl|CDD|177098 CHL00207, rpoB, RNA polymerase beta subunit; Provisional.
          Length = 1077

 Score = 27.8 bits (62), Expect = 2.1
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 138 YYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADAS 197
           Y +Q  LPL   N     +   N             + ++PK+T           G +  
Sbjct: 71  YSIQIYLPLKFINLKTNKIKFIN-----------YLIGNLPKMTQ---RGTFIINGLERV 116

Query: 198 IVSKNIMR 205
           IVS+ I+R
Sbjct: 117 IVSQ-IIR 123


>gnl|CDD|110732 pfam01755, Glyco_transf_25, Glycosyltransferase family 25 (LPS
          biosynthesis protein).  Members of this family belong
          to Glycosyltransferase family 25 This is a family of
          glycosyltransferases involved in lipopolysaccharide
          (LPS) biosynthesis. These enzymes catalyse the transfer
          of various sugars onto the growing LPS chain during its
          biosynthesis.
          Length = 200

 Score = 27.8 bits (62), Expect = 2.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 58 SLKRAQDTCQIILQEINQQHITPIYDDALN 87
          SLKRA +  + I +E  + +I   + DA++
Sbjct: 8  SLKRATERREHIQKEFGKLNIPFQFFDAID 37


>gnl|CDD|38924 KOG3720, KOG3720, KOG3720, Lysosomal & prostatic acid phosphatases
           [Lipid transport and metabolism].
          Length = 411

 Score = 27.3 bits (60), Expect = 3.0
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 29  LTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63
           LT  GM +  E+G+ L K+ + +    S      +
Sbjct: 71  LTDRGMEQMFELGRFLRKRYVRYGNFLSPKYNPKE 105


>gnl|CDD|35663 KOG0442, KOG0442, KOG0442, Structure-specific endonuclease
           ERCC1-XPF, catalytic component XPF/ERCC4 [Replication,
           recombination and repair].
          Length = 892

 Score = 27.3 bits (60), Expect = 3.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 123 PGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLI 166
             G+        +L Y  Q +L L+  + ++LV+A G SL  L+
Sbjct: 2   ESGDIETRKNMALLEYEQQVLLELLEADGNLLVLAPGLSLLRLV 45


>gnl|CDD|39026 KOG3822, KOG3822, KOG3822, Succinyl-CoA:alpha-ketoacid-CoA
           transferase [Energy production and conversion].
          Length = 516

 Score = 27.3 bits (60), Expect = 3.4
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 147 ILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVT 181
           I+  K++  V     L +LI + E +TVDDI K T
Sbjct: 465 IITEKAVFDVDKKKGL-TLIELWEGLTVDDIKKST 498


>gnl|CDD|147421 pfam05216, UNC-50, UNC-50 family.  Gmh1p from S. cerevisiae is
           located in the Golgi membrane and interacts with ARF
           exchange factors.
          Length = 232

 Score = 26.8 bits (60), Expect = 3.9
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%)

Query: 135 VLAYYVQFIL-PLILQNKSILVVAHGNSL 162
           VL Y +QF L PL++++ S + +  GN+L
Sbjct: 146 VLLYVLQFFLLPLLIRD-SFISLFVGNTL 173


>gnl|CDD|145728 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltransferase,
           carbamoyl-P binding domain. 
          Length = 140

 Score = 26.7 bits (60), Expect = 4.3
 Identities = 13/19 (68%), Positives = 15/19 (78%), Gaps = 1/19 (5%)

Query: 125 GESLRDTVARVLAYYVQFI 143
           GESL+DT ARVL+ YV  I
Sbjct: 79  GESLKDT-ARVLSRYVDAI 96


>gnl|CDD|32313 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General
           function prediction only].
          Length = 340

 Score = 26.7 bits (59), Expect = 4.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 7   LVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAK 46
            V+ G+ ++  + +  GL N P   IG+      GKL+ K
Sbjct: 299 WVKEGKIQYR-ETIVDGLENAPEAFIGLLSGKNFGKLVVK 337


>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein
           Serine/Threonine Kinase, DMPK-related cell division
           control protein 42 binding kinase beta.
           Serine/Threonine Kinases (STKs), DMPK-like subfamily,
           DMPK-related cell division control protein 42 (Cdc42)
           binding kinase (MRCK) beta isoform, catalytic (c)
           domain. STKs catalyze the transfer of the
           gamma-phosphoryl group from ATP to serine/threonine
           residues on protein substrates. The DMPK-like subfamily
           is part of a larger superfamily that includes the
           catalytic domains of other protein STKs, protein
           tyrosine kinases, RIO kinases, aminoglycoside
           phosphotransferase, choline kinase, and phosphoinositide
           3-kinase. MRCK is activated via interaction with the
           small GTPase Cdc42. MRCK/Cdc42 signaling mediates
           myosin-dependent cell motility. MRCKbeta is expressed
           ubiquitously in many tissues.
          Length = 331

 Score = 26.1 bits (57), Expect = 7.3
 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 43  LLAKQGMVFDAAFSSSLKRAQD-TCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDD 101
           LL   G +  A F S LK  QD T Q  +      +I+P    A+ +       GM K  
Sbjct: 134 LLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMED-------GMGKYG 186

Query: 102 VCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILP 145
               W +  V ++   Y   P   ESL +T  +++ +  +F  P
Sbjct: 187 PECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFP 230


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0767    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,494,816
Number of extensions: 123791
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 32
Length of query: 212
Length of database: 6,263,737
Length adjustment: 90
Effective length of query: 122
Effective length of database: 4,318,927
Effective search space: 526909094
Effective search space used: 526909094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)