RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780278|ref|YP_003064691.1| phosphoglyceromutase [Candidatus Liberibacter asiaticus str. psy62] (212 letters) >gnl|CDD|30933 COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]. Length = 230 Score = 234 bits (598), Expect = 2e-62 Identities = 99/224 (44%), Positives = 132/224 (58%), Gaps = 25/224 (11%) Query: 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62 +LVL+RHGQSEWN +NLFTG + LT G+SEA GKLL ++G+ FD A++S LKRA Sbjct: 2 MKLVLLRHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEEGLEFDIAYTSVLKRA 61 Query: 63 QDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP 122 T I+L+E +Q I I LNER YG + G+NK + K+G EQV +WRRSY + P Sbjct: 62 IKTLNIVLEESDQLWIPVIKSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPP 121 Query: 123 PG-------------------------GESLRDTVARVLAYYVQFILPLILQNKSILVVA 157 P ESL+DTV RVL Y+ I P + K++L+VA Sbjct: 122 PKLEKDDERSPHRDRRYAHLDIGGLPLTESLKDTVERVLPYWEDDIAPNLKSGKNVLIVA 181 Query: 158 HGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201 HGNSLR+LI LE I+ +DI + I TG VY+L + ++S Sbjct: 182 HGNSLRALIKYLEGISDEDILDLNIPTGIPLVYELDKNLKVISA 225 >gnl|CDD|35456 KOG0235, KOG0235, KOG0235, Phosphoglycerate mutase [Carbohydrate transport and metabolism]. Length = 214 Score = 185 bits (470), Expect = 1e-47 Identities = 77/193 (39%), Positives = 119/193 (61%), Gaps = 3/193 (1%) Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63 RLVLVRHG+SEWN +N+F G + PLT G +A + L + FD ++S LKRA+ Sbjct: 7 RLVLVRHGESEWNKENIFQGWIDAPLTEKGEEQAKAAAQRLKDLNIEFDVCYTSDLKRAK 66 Query: 64 DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQV-HLWRRS--YSV 120 T ++IL+E+ Q+ + +Y LNER YG + G+NK + ++G EQV R S + Sbjct: 67 QTAELILEELKQKKVPVLYTWRLNERHYGDLQGLNKRETAKRYGEEQVYEDPRLSDLDEI 126 Query: 121 APPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKV 180 P GESL+D + R+L ++ + I + K++L+VAHGNSLR+++ LE I+ + I ++ Sbjct: 127 PLPDGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLRAIVKHLEGISDEAIKEL 186 Query: 181 TIGTGEAFVYQLG 193 + TG VY+L Sbjct: 187 NLPTGVPIVYELD 199 >gnl|CDD|144039 pfam00300, PGAM, Phosphoglycerate mutase family. Y019_MYCTU and YK23_YEAST are not included in the Prosite entry. However these sequences are significantly similar and contain identical active site residues. Length = 155 Score = 144 bits (365), Expect = 2e-35 Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 7/162 (4%) Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63 RL LVRHG++EWN++ G + PLT G +A +GK L G+ FD +SS L RA Sbjct: 1 RLYLVRHGETEWNVEGRLQGDTDSPLTEEGREQARALGKRLK--GIPFDRIYSSPLLRAI 58 Query: 64 DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP 123 T +I+ + + + I D L ERD+G G+ +++ ++ E PP Sbjct: 59 QTAEILAEALG---LPIIVDPRLRERDFGDWEGLTFEEIKAEFPEELRAWLEDPADFRPP 115 Query: 124 GGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSL 165 GGESL D RV A + + ++L+V+HG +R+L Sbjct: 116 GGESLADVYERVEAALEELLAK--HPGGNVLIVSHGGVIRAL 155 >gnl|CDD|132718 cd07067, HP_PGM_like, Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phosphorelay signaling system. Deficiency and mutation in many of the human members result in disease, for example erythrocyte BPGM deficiency is a disease associated with a decrease in the concentration of 2,3-BPG. Length = 153 Score = 134 bits (339), Expect = 2e-32 Identities = 59/198 (29%), Positives = 86/198 (43%), Gaps = 48/198 (24%) Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63 RL LVRHG+SEWN + F G + PLT G +A +GK L + G+ FD +SS LKRA Sbjct: 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRAI 60 Query: 64 DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP 123 T +IIL+E+ + D L E Sbjct: 61 QTAEIILEELP--GLPVEVDPRLRE----------------------------------- 83 Query: 124 GGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVTIG 183 ARVL + I P K++L+V+HG LR+L+ L ++ +DI ++ + Sbjct: 84 ---------ARVLPALEELIAP--HDGKNVLIVSHGGVLRALLAYLLGLSDEDILRLNLP 132 Query: 184 TGEAFVYQLGADASIVSK 201 G V +L + V Sbjct: 133 NGSISVLELDENGGGVLL 150 >gnl|CDD|30755 COG0406, GpmB, Fructose-2,6-bisphosphatase [Carbohydrate transport and metabolism]. Length = 208 Score = 128 bits (321), Expect = 2e-30 Identities = 61/195 (31%), Positives = 101/195 (51%), Gaps = 5/195 (2%) Query: 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLK 60 M RL LVRHG++EWN++ G + PLT G ++A + + LA + + FDA +SS LK Sbjct: 1 MMMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAARDIGFDAIYSSPLK 60 Query: 61 RAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSV 120 RAQ T + + +E+ + DD L E D+G G+ D++ + E Y Sbjct: 61 RAQQTAEPLAEELG---LPLEVDDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLA 117 Query: 121 APPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKV 180 PPGGESL D RV+A + + ++LVV+HG +R+L+ L + ++++ ++ Sbjct: 118 PPPGGESLADVSKRVVAALAELLRS--PPGNNVLVVSHGGVIRALLAYLLGLDLEELWRL 175 Query: 181 TIGTGEAFVYQLGAD 195 + V + Sbjct: 176 RLDNASVTVLEFDDG 190 >gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phosphorelay signaling system; phytases scavenge phosphate from extracellular sources. Deficiency and mutation in many of the human members result in disease, for example erythrocyte BPGM deficiency is a disease associated with a decrease in the concentration of 2,3-BPG. Clinical applications include the use of prostatic acid phosphatase (PAP) as a serum marker for prostate cancer. Agricultural applications include the addition of phytases to animal feed. Length = 153 Score = 119 bits (300), Expect = 5e-28 Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 48/189 (25%) Query: 4 RLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63 L LVRHG+ E N + FTG + PLT G +A E+GK L ++ + FD +SS LKRA Sbjct: 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRERYIKFDRIYSSPLKRAI 60 Query: 64 DTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAPP 123 T +IIL+ + + + D Sbjct: 61 QTAEIILEGLF-EGLPVEVDPR-------------------------------------- 81 Query: 124 GGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVTIG 183 ARVL ++ + +L K++L+V+HG ++R+L+ L ++ ++I + + Sbjct: 82 ---------ARVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALLGLSDEEILSLNLP 132 Query: 184 TGEAFVYQL 192 G V +L Sbjct: 133 NGSILVLEL 141 >gnl|CDD|35455 KOG0234, KOG0234, KOG0234, Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]. Length = 438 Score = 56.5 bits (136), Expect = 5e-09 Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 18/183 (9%) Query: 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62 R + L RHG+SE+N++ G PL+ G A + K + +Q ++S KR Sbjct: 240 RTIYLTRHGESEFNVEGRIGGDS--PLSERGSQYAKSLIKFVEEQSSSDLDVWTSQRKRT 297 Query: 63 QDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSVAP 122 T + + + + + AL+E D G G+ +++ + E + Y Sbjct: 298 IQTAEGLKLDYSVEQWK-----ALDEIDAGVCEGLTYEEIETNYPEEFALRDKDKYRYRY 352 Query: 123 PGGESLRDTVARVLAYYVQFILPLI--LQNKS-ILVVAHGNSLRSLIMVLEKITVDDIPK 179 PGGES D V R + P+I L+ + +LV+ H +R L+ + ++P Sbjct: 353 PGGESYSDLVQR--------LEPVIMELERQENVLVITHQAVIRCLLAYFLNCSPVELPY 404 Query: 180 VTI 182 +T+ Sbjct: 405 LTV 407 >gnl|CDD|32245 COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]. Length = 163 Score = 53.0 bits (127), Expect = 6e-08 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62 RL L+RHG++EW + R PLT G EA + LA QG+ D S RA Sbjct: 2 MRLYLMRHGKAEWAAPGIADFDR--PLTERGRKEAELVAAWLAGQGVEPDLVLVSPAVRA 59 Query: 63 QDTCQIILQEINQQ 76 + T +I+ + + ++ Sbjct: 60 RQTAEIVAEHLGEK 73 >gnl|CDD|39809 KOG4609, KOG4609, KOG4609, Predicted phosphoglycerate mutase [General function prediction only]. Length = 284 Score = 43.9 bits (103), Expect = 3e-05 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Query: 3 RRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRA 62 R + L+RHG+ G LT +G +A GK LA+ G+ FD +S++ RA Sbjct: 95 RHIFLIRHGEY------HVDG-SLEHLTELGREQAELTGKRLAELGLKFDKVVASTMVRA 147 Query: 63 QDTCQIILQEINQ 75 +T IIL+ + Sbjct: 148 TETADIILKHLPD 160 >gnl|CDD|38938 KOG3734, KOG3734, KOG3734, Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]. Length = 272 Score = 35.7 bits (82), Expect = 0.009 Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 27/214 (12%) Query: 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSS-SL 59 MN L + +S +PP+T G + IG+ L G+ D F S SL Sbjct: 48 MNMPFRLPQRIRSPKGYPI------DPPITVSGFIQCKLIGRELLNAGIAIDVIFCSPSL 101 Query: 60 KRAQDTCQIILQEINQQHITPIYDDALNE-----RDYGHIAGMNKDDVCNKWGAEQV-HL 113 + Q +I ++ + + L E +D ++ D++ V Sbjct: 102 RCVQTAAKIKKGLGIEKKLKIRVEPGLFEPEKWPKDGKFPFFISPDELKFPGF--PVDLN 159 Query: 114 WRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQ--NKSILVVAHGNSL----RSLIM 167 + Y P GESL D R + + + N+++L+VAHG+S+ L Sbjct: 160 YDPVYKETPRWGESLEDCNDR----IQKVFKAIADKYPNENLLIVAHGSSVDTCSAQLQG 215 Query: 168 VLEKITVD--DIPKVTIGTGEAFVYQLGADASIV 199 + + VD I + T A + + +V Sbjct: 216 LPVRYRVDFCQIVEPTPQLSFASLSEKTGYWELV 249 >gnl|CDD|39951 KOG4754, KOG4754, KOG4754, Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]. Length = 248 Score = 32.3 bits (73), Expect = 0.10 Identities = 41/205 (20%), Positives = 67/205 (32%), Gaps = 42/205 (20%) Query: 5 LVLVRHGQSEWNIKN-------LFTGLRNPPLTSIGMSEANEIGKLL-AKQ-GMVFDAAF 55 + LVRHGQ N+ +P LT +G + + + K L AKQ + Sbjct: 17 IYLVRHGQGIHNVAGEEDHKAYWSEDYFDPHLTPLGWKQVDNLRKHLMAKQLPNKIELIV 76 Query: 56 SSSLKRAQDTCQIILQEI---NQQHITPIY--------------DDALNERDYGHIAGMN 98 S ++R T I + + P+ D + R + + Sbjct: 77 VSPMRRTLQTMVIAFGGYLAEDGEDPAPVKVSPPFIAVCRETLGDHPCDRRSS--VTDLM 134 Query: 99 KDDVCNKWGAEQVH---LWRRSYSVAPPGGESLRDTVARVLAYYVQFILPL-ILQNKSIL 154 K + + L + Y R+ A +F+ L K I Sbjct: 135 KLFPAYDFSLCETDVDPLKKPDY----------REDDEESAARSREFLEWLAKRPEKEIA 184 Query: 155 VVAHGNSLRSLIMVLEKITVDDIPK 179 VV H LRSL+ ++K D+ Sbjct: 185 VVTHSGFLRSLLKKIQKDCDPDVKP 209 >gnl|CDD|30485 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]. Length = 334 Score = 31.0 bits (70), Expect = 0.28 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Query: 29 LTSIGMSEANEIGKLLAKQGM-VFDAAFSSSLKRAQDTCQIILQEINQQHI 78 + G S + E+ A+ G V D SS R +++ E+N +H+ Sbjct: 71 FFAAGGSVSKEVEPKAAEAGCVVIDN---SSAFRMDPDVPLVVPEVNPEHL 118 >gnl|CDD|132717 cd07061, HP_HAP_like, Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of HAP (histidine acid phosphatases) and phytases (myo-inositol hexakisphosphate phosphohydrolases). The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. Functions in this subgroup include roles in metabolism, signaling, or regulation, for example Escherichia coli glucose-1-phosphatase functions to scavenge glucose from glucose-1-phosphate and the signaling molecules inositol 1,3,4,5,6-pentakisphosphate (InsP5) and inositol hexakisphosphate (InsP6) are in vivo substrates for eukaryotic multiple inositol polyphosphate phosphatase 1 (Minpp1). Phytases scavenge phosphate from extracellular sources and are added to animal feed while prostatic acid phosphatase (PAP) has been used for many years as a serum marker for prostate cancer. Recently PAP has been shown in mouse models to suppress pain by functioning as an ecto-5prime-nucleotidase. In vivo it dephosphorylates extracellular adenosine monophosphate (AMP) generating adenosine,and leading to the activation of A1-adenosine receptors in dorsal spinal cord. Length = 242 Score = 28.5 bits (64), Expect = 1.3 Identities = 29/129 (22%), Positives = 41/129 (31%), Gaps = 35/129 (27%) Query: 6 VLVRHGQSEWNIKNLFTGLRNP-PLTSIGMSEANEIGKLLAK--QGMVFDA--------A 54 VL RHG R P LT G +A E+G+ + ++ Sbjct: 7 VLSRHGD------------RYPGELTPFGRQQAFELGRYFRQRYGELLLLHSYNRSDLYI 54 Query: 55 FSSSLKRAQDTCQIIL---------QEINQQHITPIYDDALNERD---YGHIAGMNKDDV 102 SS +R + Q L Q I I DD N D Y +A Sbjct: 55 RSSDSQRTLQSAQAFLAGLFPPDGWQPIAVHTIPEEEDDVSNLFDLCAYETVAKGYSAPF 114 Query: 103 CNKWGAEQV 111 C+ + E+ Sbjct: 115 CDLFTEEEW 123 >gnl|CDD|37405 KOG2194, KOG2194, KOG2194, Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones, General function prediction only]. Length = 834 Score = 28.4 bits (63), Expect = 1.3 Identities = 12/41 (29%), Positives = 20/41 (48%) Query: 66 CQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKW 106 + +E+ Q I P D R+YGH+ G++ V N + Sbjct: 256 ASTLGEELFQSGIIPSDTDFRIFREYGHLPGLDMAFVKNGY 296 >gnl|CDD|177098 CHL00207, rpoB, RNA polymerase beta subunit; Provisional. Length = 1077 Score = 27.8 bits (62), Expect = 2.1 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 15/68 (22%) Query: 138 YYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADAS 197 Y +Q LPL N + N + ++PK+T G + Sbjct: 71 YSIQIYLPLKFINLKTNKIKFIN-----------YLIGNLPKMTQ---RGTFIINGLERV 116 Query: 198 IVSKNIMR 205 IVS+ I+R Sbjct: 117 IVSQ-IIR 123 >gnl|CDD|110732 pfam01755, Glyco_transf_25, Glycosyltransferase family 25 (LPS biosynthesis protein). Members of this family belong to Glycosyltransferase family 25 This is a family of glycosyltransferases involved in lipopolysaccharide (LPS) biosynthesis. These enzymes catalyse the transfer of various sugars onto the growing LPS chain during its biosynthesis. Length = 200 Score = 27.8 bits (62), Expect = 2.3 Identities = 10/30 (33%), Positives = 18/30 (60%) Query: 58 SLKRAQDTCQIILQEINQQHITPIYDDALN 87 SLKRA + + I +E + +I + DA++ Sbjct: 8 SLKRATERREHIQKEFGKLNIPFQFFDAID 37 >gnl|CDD|38924 KOG3720, KOG3720, KOG3720, Lysosomal & prostatic acid phosphatases [Lipid transport and metabolism]. Length = 411 Score = 27.3 bits (60), Expect = 3.0 Identities = 9/35 (25%), Positives = 16/35 (45%) Query: 29 LTSIGMSEANEIGKLLAKQGMVFDAAFSSSLKRAQ 63 LT GM + E+G+ L K+ + + S + Sbjct: 71 LTDRGMEQMFELGRFLRKRYVRYGNFLSPKYNPKE 105 >gnl|CDD|35663 KOG0442, KOG0442, KOG0442, Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]. Length = 892 Score = 27.3 bits (60), Expect = 3.1 Identities = 13/44 (29%), Positives = 22/44 (50%) Query: 123 PGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLI 166 G+ +L Y Q +L L+ + ++LV+A G SL L+ Sbjct: 2 ESGDIETRKNMALLEYEQQVLLELLEADGNLLVLAPGLSLLRLV 45 >gnl|CDD|39026 KOG3822, KOG3822, KOG3822, Succinyl-CoA:alpha-ketoacid-CoA transferase [Energy production and conversion]. Length = 516 Score = 27.3 bits (60), Expect = 3.4 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%) Query: 147 ILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKVT 181 I+ K++ V L +LI + E +TVDDI K T Sbjct: 465 IITEKAVFDVDKKKGL-TLIELWEGLTVDDIKKST 498 >gnl|CDD|147421 pfam05216, UNC-50, UNC-50 family. Gmh1p from S. cerevisiae is located in the Golgi membrane and interacts with ARF exchange factors. Length = 232 Score = 26.8 bits (60), Expect = 3.9 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 2/29 (6%) Query: 135 VLAYYVQFIL-PLILQNKSILVVAHGNSL 162 VL Y +QF L PL++++ S + + GN+L Sbjct: 146 VLLYVLQFFLLPLLIRD-SFISLFVGNTL 173 >gnl|CDD|145728 pfam02729, OTCace_N, Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain. Length = 140 Score = 26.7 bits (60), Expect = 4.3 Identities = 13/19 (68%), Positives = 15/19 (78%), Gaps = 1/19 (5%) Query: 125 GESLRDTVARVLAYYVQFI 143 GESL+DT ARVL+ YV I Sbjct: 79 GESLKDT-ARVLSRYVDAI 96 >gnl|CDD|32313 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]. Length = 340 Score = 26.7 bits (59), Expect = 4.9 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 7 LVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAK 46 V+ G+ ++ + + GL N P IG+ GKL+ K Sbjct: 299 WVKEGKIQYR-ETIVDGLENAPEAFIGLLSGKNFGKLVVK 337 >gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331 Score = 26.1 bits (57), Expect = 7.3 Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 8/104 (7%) Query: 43 LLAKQGMVFDAAFSSSLKRAQD-TCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDD 101 LL G + A F S LK QD T Q + +I+P A+ + GM K Sbjct: 134 LLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMED-------GMGKYG 186 Query: 102 VCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILP 145 W + V ++ Y P ESL +T +++ + +F P Sbjct: 187 PECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHEERFQFP 230 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.135 0.393 Gapped Lambda K H 0.267 0.0767 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 2,494,816 Number of extensions: 123791 Number of successful extensions: 313 Number of sequences better than 10.0: 1 Number of HSP's gapped: 303 Number of HSP's successfully gapped: 32 Length of query: 212 Length of database: 6,263,737 Length adjustment: 90 Effective length of query: 122 Effective length of database: 4,318,927 Effective search space: 526909094 Effective search space used: 526909094 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (24.9 bits)