BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780278|ref|YP_003064691.1| phosphoglyceromutase [Candidatus Liberibacter asiaticus str. psy62] (212 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780278|ref|YP_003064691.1| phosphoglyceromutase [Candidatus Liberibacter asiaticus str. psy62] Length = 212 Score = 440 bits (1132), Expect = e-126, Method: Compositional matrix adjust. Identities = 212/212 (100%), Positives = 212/212 (100%) Query: 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLK 60 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLK Sbjct: 1 MNRRLVLVRHGQSEWNIKNLFTGLRNPPLTSIGMSEANEIGKLLAKQGMVFDAAFSSSLK 60 Query: 61 RAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSV 120 RAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSV Sbjct: 61 RAQDTCQIILQEINQQHITPIYDDALNERDYGHIAGMNKDDVCNKWGAEQVHLWRRSYSV 120 Query: 121 APPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKV 180 APPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKV Sbjct: 121 APPGGESLRDTVARVLAYYVQFILPLILQNKSILVVAHGNSLRSLIMVLEKITVDDIPKV 180 Query: 181 TIGTGEAFVYQLGADASIVSKNIMRGQSPAEK 212 TIGTGEAFVYQLGADASIVSKNIMRGQSPAEK Sbjct: 181 TIGTGEAFVYQLGADASIVSKNIMRGQSPAEK 212 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 28.9 bits (63), Expect = 0.070, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 7/52 (13%) Query: 93 HIAGMNKDDVCNKWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFIL 144 H+AG KD + + +Q H + S GGE +R VARVLA F++ Sbjct: 385 HVAGYIKDFL---FHPDQAHSLMKHLS----GGEKMRAIVARVLAQPFNFLI 429 >gi|255764461|ref|YP_003064629.2| methionyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 511 Score = 25.8 bits (55), Expect = 0.54, Method: Compositional matrix adjust. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 28/125 (22%) Query: 51 FDAAFSSSLKRAQDTCQIILQEINQQH--ITPIYDDALNERDYGHIAGMNKDDVCN---- 104 +D ++ KR DTC+I+ ++I+ + Y + RD + N D+V Sbjct: 91 YDDFIRTTEKRHHDTCRILWKKISDKGDIYKGCYSGWYSLRDEAY---YNDDEVYKGADG 147 Query: 105 ----------KWGAEQVHLWRRSYSVAPPGGESLRDTVARVLAYYVQFILPLILQNKSIL 154 +W E+ + +R S + +D + + +FILP+ +N+ I Sbjct: 148 QYYNAQHNPVQWMEEEGYFFRLS---------AYQDKLLSYYESHPEFILPIERRNEVIS 198 Query: 155 VVAHG 159 V G Sbjct: 199 FVKSG 203 >gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter asiaticus str. psy62] Length = 1775 Score = 23.9 bits (50), Expect = 2.0, Method: Compositional matrix adjust. Identities = 12/22 (54%), Positives = 13/22 (59%) Query: 148 LQNKSILVVAHGNSLRSLIMVL 169 LQN+S L V GN SLI L Sbjct: 1014 LQNRSALFVGEGNVFDSLIQRL 1035 >gi|254780795|ref|YP_003065208.1| homoserine kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 316 Score = 23.5 bits (49), Expect = 2.7, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 19 NLFTGLRNPPLTSIGMSEANEIGKLLA 45 N+F+ ++ PL I EIG +LA Sbjct: 100 NIFSFIKGSPLNHISDIHCEEIGSMLA 126 >gi|254780228|ref|YP_003064641.1| hypothetical protein CLIBASIA_00565 [Candidatus Liberibacter asiaticus str. psy62] Length = 346 Score = 23.5 bits (49), Expect = 2.9, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Query: 164 SLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSK 201 S+IM L+ T+ DIP++ GT + L +SI +K Sbjct: 311 SVIMFLQ--TIVDIPEIFTGTSSTILIFLSIYSSIKNK 346 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 23.1 bits (48), Expect = 3.7, Method: Compositional matrix adjust. Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 8/53 (15%) Query: 156 VAHGNSLRSLIMVLEKITVDDIPKVTIGTGEAFVYQLGADASIVSKNIMRGQS 208 +AH R L +LEKI +D + ++ + G + V I+S ++++G++ Sbjct: 362 IAHKTGARGLRSILEKILLDTMFELPMLKGVSSV--------IISDDVVKGKA 406 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.135 0.393 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 127,841 Number of Sequences: 1233 Number of extensions: 4809 Number of successful extensions: 20 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 7 length of query: 212 length of database: 328,796 effective HSP length: 70 effective length of query: 142 effective length of database: 242,486 effective search space: 34433012 effective search space used: 34433012 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 36 (18.5 bits)