HHsearch alignment for GI: 254780279 and conserved domain: PRK00141
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=96.43 E-value=0.02 Score=36.81 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=49.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHH--
Q ss_conf 799989987799999999838997899999648980204553666087546754556857852135504763101024--
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT-- 84 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~-- 84 (280)
T Consensus 19 kvlV~GlG~SG~s~a~~L~-~~G~~v~~~D~~~~~~-~--~~~~~~~~~~--~-~~~~~~~~~~~~d~vV--~SPGI~~~ 89 (476)
T PRK00141 19 RVLVAGAGVSGLGIAKMLS-ELGCDVVVADDNETQR-H--MLIEVVDVAD--I-STAQASDALDSYSIVV--TSPGWRPD 89 (476)
T ss_pred CEEEEEECHHHHHHHHHHH-HCCCEEEEEECCCCHH-H--HHHHHCCCCE--E-CCCCHHHHHCCCCEEE--ECCCCCCC
T ss_conf 8899922788999999999-7899799998998703-5--7887479856--5-1553065646899999--89978997
Q ss_pred HHHHHHHHHCCCEEE
Q ss_conf 788876432372157
Q gi|254780279|r 85 LQSLNISAQHNIVHI 99 (280)
Q Consensus 85 ~~~~~~a~~~g~~vV 99 (280)
T Consensus 90 ~p~l~~a~~~gi~vi 104 (476)
T PRK00141 90 SPLLVDAQSAGLEVI 104 (476)
T ss_pred CHHHHHHHHCCCCEE
T ss_conf 999999998799577