HHsearch alignment for GI: 254780279 and conserved domain: PRK00683
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=93.88 E-value=0.2 Score=29.85 Aligned_cols=116 Identities=19% Similarity=0.251 Sum_probs=56.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH-
Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521355047631010247-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL- 85 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~- 85 (280)
T Consensus 5 kvlV~GlG~SG~s~a~~L~~-~g~~v~-~~D~~~~~~~~~--------~~~~~~~~~~~~~~~~~~d~vv--~SPGi~~~ 72 (418)
T PRK00683 5 RVVVLGLGVTGKSVARFLAQ-KGVYVI-GVDNSLEALQSC--------PYIHERYLEGAEEFPEQVDLVV--RSPGIKPY 72 (418)
T ss_pred EEEEEEECHHHHHHHHHHHH-CCCEEE-EECCCHHHHHHC--------CHHHHHCCCCHHHCCCCCCEEE--ECCCCCCC
T ss_conf 69998088879999999997-829899-982981454546--------1455540562332423498999--89985998
Q ss_pred -HHHHHHHHCCCE--------------------EEEEECCCCHHHHHHHHHHHC--CCCCEECCCHHHHHHHHHH
Q ss_conf -888764323721--------------------576502223135899987403--5552100001156899999
Q gi|254780279|r 86 -QSLNISAQHNIV--------------------HIIGTTGFSVKENEVISSFAR--NAPIVKSSNMSLGINFLGF 137 (280)
Q Consensus 86 -~~~~~a~~~g~~--------------------vViGTTG~~~e~~~~l~~~s~--~~~il~apN~SiGv~ll~~ 137 (280)
T Consensus 73 ~p~~~~a~~~~i~i~seiel~~~~~~~~~~~~IaITGTNGKTTT-t~ll~~iL~~~g~~~~~~GNI--G~p~l~~ 144 (418)
T PRK00683 73 HPWVEAAVALKIPVVTDIQLAFQTPEFQRYPSLGITGSTGKTTT-ILFLEHLLRTLGIPAFAMGNI--GLPILDG 144 (418)
T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEEH-HHHHHHHHHHCCCCCEEEECC--CHHHHHH
T ss_conf 89999999869975407999974244147987999768986609-999999998679981888034--6577764