HHsearch alignment for GI: 254780279 and conserved domain: PRK01390
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=94.40 E-value=0.15 Score=30.72 Aligned_cols=115 Identities=17% Similarity=0.272 Sum_probs=55.5
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEECCCHHH-
Q ss_conf 7999899877999999998389978999996489802045536660875467545568578521355047631010247-
Q gi|254780279|r 7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALTL- 85 (280)
Q Consensus 7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT~P~~~~- 85 (280)
T Consensus 11 ~v~v~GlG~sG~s~a~~L~-~~G~~V~-~~D~~~~~~---~~~-----~~~g~~~~~~~~~~~~~~~~iV--~SPGIp~~ 78 (457)
T PRK01390 11 TVALFGLGGSGLATARALK-AGGAEVI-AWDDNPDSV---AKA-----AAAGIATADLRTADWSQFAALV--LSPGVPLT 78 (457)
T ss_pred EEEEEEECHHHHHHHHHHH-HCCCEEE-EEECCCHHH---HHH-----HHCCCCCCCCCCCCCCCCCEEE--ECCCCCCC
T ss_conf 8999943699999999999-7899799-993992066---899-----8759831455412320387899--99988865
Q ss_pred -----HHHHHHHHCCCEE-------------------EEEECCCCHHH--HHHHHHHHCC--CCCEECCCHHHHHHHH
Q ss_conf -----8887643237215-------------------76502223135--8999874035--5521000011568999
Q gi|254780279|r 86 -----QSLNISAQHNIVH-------------------IIGTTGFSVKE--NEVISSFARN--APIVKSSNMSLGINFL 135 (280)
Q Consensus 86 -----~~~~~a~~~g~~v-------------------ViGTTG~~~e~--~~~l~~~s~~--~~il~apN~SiGv~ll 135 (280)
T Consensus 79 ~p~~~~~v~~a~~~gi~v~seielf~~~~~~~~~~~~iIaVTGTnGKTTTtsli~~iL~~~g~~~~~gGN--IG~p~l 154 (457)
T PRK01390 79 HPKPHWTVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHLLRQAGRDVQMGGN--IGTAIL 154 (457)
T ss_pred CCCCHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECC--CCHHHC
T ss_conf 6673199999998599186008999999873257898899928996498999999999973998699666--240111