HHsearch alignment for GI: 254780279 and conserved domain: PRK01438

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=95.32  E-value=0.11  Score=31.61  Aligned_cols=122  Identities=17%  Similarity=0.258  Sum_probs=62.1

Q ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC--CCCHHHHHCCCCEEEEEECCC
Q ss_conf             737999899877999999998389978999996489802045536660875467545--568578521355047631010
Q gi|254780279|r    5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF--SDNLAMAIQSVDGIIDFSSPA   82 (280)
Q Consensus         5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i--~~dl~~~~~~~DViIDFT~P~   82 (280)
T Consensus        14 gk~v~V~GlG~sG~s~a~~L~~-~G~~v~~~D~~~~~~-~~-~--~~~~l~~~g~~~~~g~~~~~~~~~~d~vV--~SPG   86 (481)
T PRK01438         14 GLRVVVAGLGVSGFPAADALHE-LGASVTVVADGDDDR-SR-E--RAALLEVLGATVRLGDGETTLPEGTELVV--TSPG   86 (481)
T ss_pred             CCEEEEEEECHHHHHHHHHHHH-CCCEEEEEECCCCCC-CH-H--HHHHHHHCCCEEEECCCHHHHHCCCCEEE--ECCC
T ss_conf             9989999575889999999996-799899997998744-86-8--99988854988996887566624899999--8997


Q ss_pred             HH--HHHHHHHHHCCCEE----------------------EEEECCCCHHHHHHHHHHHCC--CCCEECCCHHHHHHHHH
Q ss_conf             24--78887643237215----------------------765022231358999874035--55210000115689999
Q gi|254780279|r   83 LT--LQSLNISAQHNIVH----------------------IIGTTGFSVKENEVISSFARN--APIVKSSNMSLGINFLG  136 (280)
Q Consensus        83 ~~--~~~~~~a~~~g~~v----------------------ViGTTG~~~e~~~~l~~~s~~--~~il~apN~SiGv~ll~  136 (280)
T Consensus        87 I~~~~p~~~~a~~~gi~i~~eiel~~~~~~~~~~~~~~IaVTGTnGKTTT-tsli~~iL~~~g~~~~~~GN--IG~p~l~  163 (481)
T PRK01438         87 WRPTHPLLAAAAEAGIPVWGDVELAWRLRDPDGTPAPWLAVTGTNGKTTT-VQMLASILRAAGLRAAAVGN--IGVPVLD  163 (481)
T ss_pred             CCCCCHHHHHHHHCCCCEECHHHHHHHHHHCCCCCCCEEEEECCCCCHHH-HHHHHHHHHHCCCCEEEEEE--CCHHHHH
T ss_conf             89989999999986993861899999875213688878999389974609-99999999966997079962--5677776