HHsearch alignment for GI: 254780279 and conserved domain: PRK02472
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=92.52 E-value=0.59 Score=26.68 Aligned_cols=85 Identities=15% Similarity=0.138 Sum_probs=43.6
Q ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCC--CHHHHH-CCCCEEEEEECCC
Q ss_conf 3799989987799999999838997899999648980204553666087546754556--857852-1355047631010
Q gi|254780279|r 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSD--NLAMAI-QSVDGIIDFSSPA 82 (280)
Q Consensus 6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~--dl~~~~-~~~DViIDFT~P~ 82 (280)
T Consensus 10 k~i~viGlG~sG~s~a~~L~-~~G~~V~~-~D~~~~~--~-~-~~~~~l~~~gi~~~~g~~~~~~~~~~~d~vV--~SPg 81 (450)
T PRK02472 10 KKVLVLGLAKSGYAAAKLLH-KLGANVTV-NDGKPFS--E-N-PAAQELLEEGIKVICGSHPLELLDENFDLMV--KNPG 81 (450)
T ss_pred CEEEEEEECHHHHHHHHHHH-HCCCEEEE-EECCCCC--C-C-HHHHHHHHCCCEEEECCCHHHHCCCCCCEEE--ECCC
T ss_conf 98999977899999999999-88698999-8488665--7-9-8999999679989978880786057887999--8998
Q ss_pred HH--HHHHHHHHHCCCEE
Q ss_conf 24--78887643237215
Q gi|254780279|r 83 LT--LQSLNISAQHNIVH 98 (280)
Q Consensus 83 ~~--~~~~~~a~~~g~~v 98 (280)
T Consensus 82 I~~~~p~~~~a~~~~i~v 99 (450)
T PRK02472 82 IPYDNPMVEEALEKGIPI 99 (450)
T ss_pred CCCCCHHHHHHHHCCCCE
T ss_conf 799999999999869967