HHsearch alignment for GI: 254780279 and conserved domain: PRK02472

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=92.52  E-value=0.59  Score=26.68  Aligned_cols=85  Identities=15%  Similarity=0.138  Sum_probs=43.6

Q ss_pred             EEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCC--CHHHHH-CCCCEEEEEECCC
Q ss_conf             3799989987799999999838997899999648980204553666087546754556--857852-1355047631010
Q gi|254780279|r    6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSD--NLAMAI-QSVDGIIDFSSPA   82 (280)
Q Consensus         6 IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~--dl~~~~-~~~DViIDFT~P~   82 (280)
T Consensus        10 k~i~viGlG~sG~s~a~~L~-~~G~~V~~-~D~~~~~--~-~-~~~~~l~~~gi~~~~g~~~~~~~~~~~d~vV--~SPg   81 (450)
T PRK02472         10 KKVLVLGLAKSGYAAAKLLH-KLGANVTV-NDGKPFS--E-N-PAAQELLEEGIKVICGSHPLELLDENFDLMV--KNPG   81 (450)
T ss_pred             CEEEEEEECHHHHHHHHHHH-HCCCEEEE-EECCCCC--C-C-HHHHHHHHCCCEEEECCCHHHHCCCCCCEEE--ECCC
T ss_conf             98999977899999999999-88698999-8488665--7-9-8999999679989978880786057887999--8998


Q ss_pred             HH--HHHHHHHHHCCCEE
Q ss_conf             24--78887643237215
Q gi|254780279|r   83 LT--LQSLNISAQHNIVH   98 (280)
Q Consensus        83 ~~--~~~~~~a~~~g~~v   98 (280)
T Consensus        82 I~~~~p~~~~a~~~~i~v   99 (450)
T PRK02472         82 IPYDNPMVEEALEKGIPI   99 (450)
T ss_pred             CCCCCHHHHHHHHCCCCE
T ss_conf             799999999999869967