HHsearch alignment for GI: 254780279 and conserved domain: PRK05472
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional.
Probab=97.39 E-value=0.0011 Score=45.35 Aligned_cols=116 Identities=16% Similarity=0.273 Sum_probs=75.4
Q ss_pred CCCEEEEEECCCHHHHHHHHHH-HHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCC--CCCHHHHHCC--CCEEEE
Q ss_conf 8873799989987799999999-8389978999996489802045536660875467545--5685785213--550476
Q gi|254780279|r 3 QSPMRISVLGGGRMGQALIKEI-HNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF--SDNLAMAIQS--VDGIID 77 (280)
Q Consensus 3 ~~~IkV~I~GaGkMG~~ii~~i-~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i--~~dl~~~~~~--~DViID 77 (280)
T Consensus 82 ~~~~~v~lvGaGnLG~AL~~y~gf~~~gf~Iva~FD~dp~-kiG~~i--------~gi~V~~i~~L~~~i~~~~i~iaIi 152 (211)
T PRK05472 82 DKTTNVALVGAGNLGRALLNYNGFKKRGFKIVAAFDVDPE-KVGTKI--------GGIPVYHIDELEEVIKENDIEIAIL 152 (211)
T ss_pred CCCCEEEEECCCHHHHHHHHCCCHHHCCCEEEEEECCCHH-HCCCEE--------CCEEEECHHHHHHHHHHHCCCEEEE
T ss_conf 9975089988877999998487623189789999748978-859883--------8838734999999999819938999
Q ss_pred EECCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHH
Q ss_conf 3101024788876432372157650222313589998740355521000011568999
Q gi|254780279|r 78 FSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFL 135 (280)
Q Consensus 78 FT~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll 135 (280)
T Consensus 153 aVP~~~AQ~vad~Lv~aGIk~Il---NFap~~L~vP----~~-V~V~nvDl~~~L~~L 202 (211)
T PRK05472 153 TVPAEAAQEVADRLVEAGIKGIL---NFAPVRLNVP----ED-VIVQNVDLTVELQTL 202 (211)
T ss_pred ECCHHHHHHHHHHHHHHCCEEEE---ECCCCCCCCC----CC-CEEEECCHHHHHHHH
T ss_conf 55768899999999981983999---7687244799----99-789973709899999