HHsearch alignment for GI: 254780279 and conserved domain: PRK11154

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed.
Probab=94.34  E-value=0.084  Score=32.48  Aligned_cols=157  Identities=20%  Similarity=0.221  Sum_probs=74.0

Q ss_pred             EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH-HC-----CCHHHHCC---C-------CCCCCCCCCCHHHHHC
Q ss_conf             7999899877999999998389978999996489802-04-----55366608---7-------5467545568578521
Q gi|254780279|r    7 RISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL-IG-----QDVGNFVG---I-------SPMGIKFSDNLAMAIQ   70 (280)
Q Consensus         7 kV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~-~g-----~d~~~~~~---~-------~~~~v~i~~dl~~~~~   70 (280)
T Consensus       311 kv~ViGaG~MG~gIA~~~a~~aG~~V~-l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~~~l~~i~~~~~~~-~~~  388 (706)
T PRK11154        311 KVGVLGGGLMGGGIAYVTATKAGLPVR-IKDINPQGINHALKYSWDLLDKKVKRRHMTPAERDKQMALISGTTDYR-GFK  388 (706)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEECCHH-HHC
T ss_conf             799986473238999999998698799-997999999999998899999998618999899999862241004412-315


Q ss_pred             CCCEEEEEEC------------------CC-------HHHHHHHHHHHCCCE----------------E--EEEECCCCH
Q ss_conf             3550476310------------------10-------247888764323721----------------5--765022231
Q gi|254780279|r   71 SVDGIIDFSS------------------PA-------LTLQSLNISAQHNIV----------------H--IIGTTGFSV  107 (280)
Q Consensus        71 ~~DViIDFT~------------------P~-------~~~~~~~~a~~~g~~----------------v--ViGTTG~~~  107 (280)
T Consensus       389 ~~DlVIEAv~E~~~~K~~v~~~le~~~~~~aIlAtNTSsl~i~~la~~~~rP~r~iG~HFfnP~~~m~LVEVi~g~~Ts~  468 (706)
T PRK11154        389 HADLVIEAVFEDLALKQQMVADVEQNCAEHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSA  468 (706)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEECCCCCCH
T ss_conf             68879997145288899999999964798858950676776899998647841045544257744264279943789838


Q ss_pred             HHHHHHHHHHC---CCCCEE--CCCHHHHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCH
Q ss_conf             35899987403---555210--000115689-9999999999861156660089999864167899867
Q gi|254780279|r  108 KENEVISSFAR---NAPIVK--SSNMSLGIN-FLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSG  170 (280)
Q Consensus       108 e~~~~l~~~s~---~~~il~--apN~SiGv~-ll~~l~~~~a~~l~~~~~~dieI~E~HH~~K~DaPSG  170 (280)
T Consensus       469 et~~~~~~~~~~lgK~pv~v~d~pGFi--~NRil~~~~~ea~~l~~e--G~~~~~ID~a~-~~~G~pmG  532 (706)
T PRK11154        469 ETIATTVALAKKQGKTPIVVKDGAGFY--VNRILAPYMNEAARLLLE--GEPIEHIDAAL-VKFGFPVG  532 (706)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCCCCCH--HHHHHHHHHHHHHHHHHC--CCCHHHHHHHH-HHCCCCCC
T ss_conf             999999999997598789963237417--999999999999999976--99999999999-97599878