HHsearch alignment for GI: 254780279 and conserved domain: TIGR01214
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=93.18 E-value=0.34 Score=28.29 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=94.3
Q ss_pred EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEE------
Q ss_conf 7999899-877999999998389978999996489802045536660875467545568578521--3550476------
Q gi|254780279|r 7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIID------ 77 (280)
Q Consensus 7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViID------ 77 (280)
T Consensus 1 rilitGa~GQlG~~L~~~l~~-~g~~~~~~-~~~~-~~-----~~~~~~~~~Dl~dP~~l~~~~r~~~Pd~vvntAAYT~ 72 (317)
T TIGR01214 1 RILITGANGQLGRELVQQLSK-PGRVVVAL-TRST-RL-----KLAARWSQLDLTDPEALEELLRAIRPDAVVNTAAYTD 72 (317)
T ss_pred CEEEECCCCHHHHHHHHHCCC-CCCEEEEE-CCCC-CC-----CHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCHHCC
T ss_conf 978873875679999997078-88278643-6877-76-----1133654406224688999998528753762301101
Q ss_pred -----------EE-CCCHHHHHHHHHHHCCCEEEEEEC-----C-C--------CH---------------HHHHHHHHH
Q ss_conf -----------31-010247888764323721576502-----2-2--------31---------------358999874
Q gi|254780279|r 78 -----------FS-SPALTLQSLNISAQHNIVHIIGTT-----G-F--------SV---------------KENEVISSF 116 (280)
Q Consensus 78 -----------FT-~P~~~~~~~~~a~~~g~~vViGTT-----G-~--------~~---------------e~~~~l~~~ 116 (280)
T Consensus 73 VD~AE~~~~~AyavNa~A~~~lA~~A~~~Ga~~vh~STDYVFDGdfGG~~~~PY~e~D~~nPlnvYG~SK~~GE~a~~~~ 152 (317)
T TIGR01214 73 VDGAESDPEKAYAVNALAPQNLARAAARVGARLVHISTDYVFDGDFGGEGKRPYREDDETNPLNVYGQSKLAGEQAVRAA 152 (317)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 00003777787657407899999999866915999863423447557888668876468798431211156899999983
Q ss_pred HC--C-----CCCEECCCHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 03--5-----55210000115689999999999-9861156660089999864167899867899999999853288
Q gi|254780279|r 117 AR--N-----APIVKSSNMSLGINFLGFLVETA-AEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANGRKV 185 (280)
Q Consensus 117 s~--~-----~~il~apN~SiGv~ll~~l~~~~-a~~l~~~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~ 185 (280)
T Consensus 153 ~~~e~~lIvRTsWlY~~~g~~g~NF~~tMlrLaG~~~~------~l~vV~D----Q~GsPTy-~~dLA~~~~~ll~~ 218 (317)
T TIGR01214 153 GPDENALIVRTSWLYGAGGGSGRNFVKTMLRLAGKERE------ELRVVDD----QIGSPTY-AKDLARAIAALLER 218 (317)
T ss_pred CCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCC------CEEEEEC----CCCCHHH-HHHHHHHHHHHHHH
T ss_conf 79985788985213448998842179999985378998------4037855----7687358-99999999999976