HHsearch alignment for GI: 254780279 and conserved domain: TIGR01214

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=93.18  E-value=0.34  Score=28.29  Aligned_cols=160  Identities=19%  Similarity=0.283  Sum_probs=94.3

Q ss_pred             EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEE------
Q ss_conf             7999899-877999999998389978999996489802045536660875467545568578521--3550476------
Q gi|254780279|r    7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIID------   77 (280)
Q Consensus         7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViID------   77 (280)
T Consensus         1 rilitGa~GQlG~~L~~~l~~-~g~~~~~~-~~~~-~~-----~~~~~~~~~Dl~dP~~l~~~~r~~~Pd~vvntAAYT~   72 (317)
T TIGR01214         1 RILITGANGQLGRELVQQLSK-PGRVVVAL-TRST-RL-----KLAARWSQLDLTDPEALEELLRAIRPDAVVNTAAYTD   72 (317)
T ss_pred             CEEEECCCCHHHHHHHHHCCC-CCCEEEEE-CCCC-CC-----CHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCHHCC
T ss_conf             978873875679999997078-88278643-6877-76-----1133654406224688999998528753762301101


Q ss_pred             -----------EE-CCCHHHHHHHHHHHCCCEEEEEEC-----C-C--------CH---------------HHHHHHHHH
Q ss_conf             -----------31-010247888764323721576502-----2-2--------31---------------358999874
Q gi|254780279|r   78 -----------FS-SPALTLQSLNISAQHNIVHIIGTT-----G-F--------SV---------------KENEVISSF  116 (280)
Q Consensus        78 -----------FT-~P~~~~~~~~~a~~~g~~vViGTT-----G-~--------~~---------------e~~~~l~~~  116 (280)
T Consensus        73 VD~AE~~~~~AyavNa~A~~~lA~~A~~~Ga~~vh~STDYVFDGdfGG~~~~PY~e~D~~nPlnvYG~SK~~GE~a~~~~  152 (317)
T TIGR01214        73 VDGAESDPEKAYAVNALAPQNLARAAARVGARLVHISTDYVFDGDFGGEGKRPYREDDETNPLNVYGQSKLAGEQAVRAA  152 (317)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             00003777787657407899999999866915999863423447557888668876468798431211156899999983


Q ss_pred             HC--C-----CCCEECCCHHHHHHHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             03--5-----55210000115689999999999-9861156660089999864167899867899999999853288
Q gi|254780279|r  117 AR--N-----APIVKSSNMSLGINFLGFLVETA-AEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANGRKV  185 (280)
Q Consensus       117 s~--~-----~~il~apN~SiGv~ll~~l~~~~-a~~l~~~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~  185 (280)
T Consensus       153 ~~~e~~lIvRTsWlY~~~g~~g~NF~~tMlrLaG~~~~------~l~vV~D----Q~GsPTy-~~dLA~~~~~ll~~  218 (317)
T TIGR01214       153 GPDENALIVRTSWLYGAGGGSGRNFVKTMLRLAGKERE------ELRVVDD----QIGSPTY-AKDLARAIAALLER  218 (317)
T ss_pred             CCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCC------CEEEEEC----CCCCHHH-HHHHHHHHHHHHHH
T ss_conf             79985788985213448998842179999985378998------4037855----7687358-99999999999976