HHsearch alignment for GI: 254780279 and conserved domain: TIGR02130
>TIGR02130 dapB_plant dihydrodipicolinate reductase; InterPro: IPR011859 This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome..
Probab=99.96 E-value=9.2e-29 Score=217.06 Aligned_cols=254 Identities=20% Similarity=0.278 Sum_probs=185.2
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCC-CCCCC--CCCHHHHHCC-CC-EEEEEE
Q ss_conf 37999899-8779999999983899789999964898020455366608754-67545--5685785213-55-047631
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISP-MGIKF--SDNLAMAIQS-VD-GIIDFS 79 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~-~~v~i--~~dl~~~~~~-~D-ViIDFT 79 (280)
T Consensus 1 ~~~MVNG~~G~MG~~V~~~~~-~~G~~~VP~Sl~-~~~~~~~~-~EV~GK~I~~~~P~~RE~~~~~Vl~KYP~lI~~DYT 77 (275)
T TIGR02130 1 VSVMVNGISGKMGKIVIKAAV-AAGLELVPYSLT-SVIIVENE-VEVAGKEILLLKPSEREKVLSEVLEKYPELIVVDYT 77 (275)
T ss_pred CEEEEECCCCCHHHHHHHHHH-HCCCEEECCCCC-CEEEECCE-EEEECCEEEEECCCHHHHHHHHHHHHCCCEEEECCC
T ss_conf 958872678825688887775-478434302556-33563454-665063888617751467899998638875998047
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHHH
Q ss_conf 010247888764323721576502223135899987403555210000115689999999999986115-6660089999
Q gi|254780279|r 80 SPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFLGFLVETAAEYLLP-AKDWDFEILE 158 (280)
Q Consensus 80 ~P~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s~~~~il~apN~SiGv~ll~~l~~~~a~~l~~-~~~~dieI~E 158 (280)
T Consensus 78 ~P~AVNDNA~lY~K~~~PFVMGTTGGDR~~L~K~V~~~-~~~~VI~P~M~KQ~VAF~~~~E~l~~~FP~AF~GY~L~V~E 156 (275)
T TIGR02130 78 IPSAVNDNAELYVKVKVPFVMGTTGGDREALAKLVEDA-KIYAVIAPNMAKQVVAFLAAIEILAKEFPTAFEGYKLEVVE 156 (275)
T ss_pred CCCCCCCCHHHHCCCCCCEEECCCCCHHHHHHHHHHHC-CCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 88731220352002357646537874189999998750-77614367302489999999999863077621472168870
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC----CCCCEEEECCCCCEEEEEEEECCCCEE--
Q ss_conf 86416789986789999999985328876422111235767654334----565013752882057999981899589--
Q gi|254780279|r 159 MHHRRKLDSPSGTALLLGEAIANGRKVNLTDHMVLNRHIQQCARTEG----SIGIASLRAGSIVGEHSVVIAGEGESI-- 232 (280)
Q Consensus 159 ~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~I~i~s~R~g~~~g~H~V~f~~~~E~i-- 232 (280)
T Consensus 157 SHQ~~K~D~-SGTA~AV~~~FQKl-G~------~Y~~D~I~~~R~~K~Q~E~~~VPEE~~~GH-AFH~Y~L~S~D~TV~F 227 (275)
T TIGR02130 157 SHQKSKLDA-SGTAKAVVSTFQKL-GV------DYDMDDIEKVRDEKEQIEVVGVPEEYLSGH-AFHLYSLDSADKTVSF 227 (275)
T ss_pred CCCCCCCCC-CCCHHHHHHHHHHC-CC------CCCHHHHHHHCCCCCCEEECCCCCCCCCCC-EEEEEEECCCCCCEEE
T ss_conf 111224675-65302201024224-73------247215763227014162334785202772-4565431189970766
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHCC-----CCCCCCHHHHHCCC
Q ss_conf 99999727376799999999998348-----99836888982688
Q gi|254780279|r 233 TLSHSAYDRRIFARGSLTAALWAKSQ-----IPGLYSMRDVLGIG 272 (280)
Q Consensus 233 ~i~H~a~~R~~Fa~Gal~aa~~l~~~-----~~G~y~m~dvL~l~ 272 (280)
T Consensus 228 EFQHNVCGR~IYAEGTVDAV~FLA~~i~~~~~~~~yNM~DVLR~G 272 (275)
T TIGR02130 228 EFQHNVCGRKIYAEGTVDAVLFLADKIIAKAEKKIYNMIDVLREG 272 (275)
T ss_pred EEEECCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 554143575054062289999999998863116840000000378