HHsearch alignment for GI: 254780279 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.04 E-value=0.037 Score=34.91 Aligned_cols=93 Identities=15% Similarity=0.267 Sum_probs=55.0
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCC--CCCCCCCCCHHHHHCCCCEEEEEEC--
Q ss_conf 37999899-877999999998389978999996489802045536660875--4675455685785213550476310--
Q gi|254780279|r 6 MRISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGIS--PMGIKFSDNLAMAIQSVDGIIDFSS-- 80 (280)
Q Consensus 6 IkV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~--~~~v~i~~dl~~~~~~~DViIDFT~-- 80 (280)
T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~-G~~V~~-l~r~~~~~~~--~~~-~~~~~~~gDl~d~~~~~~~~~~~d~ViH~Aa~~ 75 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLER-GEEVRV-LVRPTSDRRN--LEG-LDVEIVEGDLRDPASLRKALAGCRALFHVAADY 75 (328)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEE-EECCCCCHHH--HCC-CCCEEEEEECCCHHHHHHHHHCCCEEEEECCCC
T ss_conf 94999867779999999999978-498999-9899986556--521-797799820799999999971785897613423
Q ss_pred ------C--------CHHHHHHHHHHHCCCE-EEEEEC
Q ss_conf ------1--------0247888764323721-576502
Q gi|254780279|r 81 ------P--------ALTLQSLNISAQHNIV-HIIGTT 103 (280)
Q Consensus 81 ------P--------~~~~~~~~~a~~~g~~-vViGTT 103 (280)
T Consensus 76 ~~~~~~~~~~~~~Nv~gt~nll~aa~~~~v~r~V~~SS 113 (328)
T TIGR03466 76 RLWAPDPEEMYRANVEGTRNLLRAALEAGVERVVYTSS 113 (328)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 44679989999999999999999999729874315633