HHsearch alignment for GI: 254780279 and conserved domain: cd01338
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.89 E-value=0.012 Score=38.25 Aligned_cols=124 Identities=16% Similarity=0.250 Sum_probs=61.6
Q ss_pred CCEEEEEECC-CHHHHHHHHHHHHC------CCCEEEEEEECCCCH--HH--CCCHHHHCCCCCCCCCCCCCHHHHHCCC
Q ss_conf 8737999899-87799999999838------997899999648980--20--4553666087546754556857852135
Q gi|254780279|r 4 SPMRISVLGG-GRMGQALIKEIHNN------PSITLHSIIVRSGSP--LI--GQDVGNFVGISPMGIKFSDNLAMAIQSV 72 (280)
Q Consensus 4 ~~IkV~I~Ga-GkMG~~ii~~i~~~------~~~eLv~~i~~~~~~--~~--g~d~~~~~~~~~~~v~i~~dl~~~~~~~ 72 (280)
T Consensus 1 ~p~KV~IiGAaG~IG~~la~~la~g~l~g~~~~v~l-~L~Di~~~~~~l~G~amDl~~~a~~~~~~v~~~~~~~~a~~~a 79 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVIL-QLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDA 79 (322)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHCHHCCCCCEEEE-EEECCCCCCCCCCEEEEEHHHCCCCCCCCEEEECCHHHHHCCC
T ss_conf 970999989996899999999971113079972699-9975757566676577445326765458779748878983788
Q ss_pred CEEEEEE-CC-CHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH-CCCCCEECCCHHHHHHHHHHHH
Q ss_conf 5047631-01-024788876432372157650222313589998740-3555210000115689999999
Q gi|254780279|r 73 DGIIDFS-SP-ALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFA-RNAPIVKSSNMSLGINFLGFLV 139 (280)
Q Consensus 73 DViIDFT-~P-~~~~~~~~~a~~~g~~vViGTTG~~~e~~~~l~~~s-~~~~il~apN~SiGv~ll~~l~ 139 (280)
T Consensus 80 DvVvitaG~prkPG~tR~DLl~~-Na~I-------~~~~~~~i~~~a~p~~~vivvsNP---vd~~~~v~ 138 (322)
T cd01338 80 DWALLVGAKPRGPGMERADLLKA-NGKI-------FTAQGKALNDVASRDVKVLVVGNP---CNTNALIA 138 (322)
T ss_pred CEEEEECCCCCCCCCCHHHHHHH-HHHH-------HHHHHHHHHHHCCCCCEEEEECCH---HHHHHHHH
T ss_conf 78999368789989818999998-6899-------999999999757988389995781---88899999