HHsearch alignment for GI: 254780279 and conserved domain: cd05211
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=91.14 E-value=1.3 Score=24.28 Aligned_cols=117 Identities=12% Similarity=0.046 Sum_probs=62.7
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHH--HCCCHHHHCCCC--------CCCCCCCCCHHHHHCCCCE
Q ss_conf 737999899877999999998389978999996489802--045536660875--------4675455685785213550
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPL--IGQDVGNFVGIS--------PMGIKFSDNLAMAIQSVDG 74 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~--~g~d~~~~~~~~--------~~~v~i~~dl~~~~~~~DV 74 (280)
T Consensus 23 g~~vaVqGfGnVG~~~a~~l~~-~GakvvavsD~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~DI 100 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAE-EGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE-AILGLDVDI 100 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCE
T ss_conf 9999998988999999999998-59989999857871778999869999999981896536665305986-500367768
Q ss_pred EEEEECCCHH-HHHHHHHHHCCCEEEEEE-CCC-CHHHHHHHHHHHCCCCCEECCCHHH
Q ss_conf 4763101024-788876432372157650-222-3135899987403555210000115
Q gi|254780279|r 75 IIDFSSPALT-LQSLNISAQHNIVHIIGT-TGF-SVKENEVISSFARNAPIVKSSNMSL 130 (280)
Q Consensus 75 iIDFT~P~~~-~~~~~~a~~~g~~vViGT-TG~-~~e~~~~l~~~s~~~~il~apN~Si 130 (280)
T Consensus 101 liPaAl~~~I~~~~a~~---i~ak~I~EgAN~P~t~ea~~iL~~----rgI~viPD~la 152 (217)
T cd05211 101 FAPCALGNVIDLENAKK---LKAKVVAEGANNPTTDEALRILHE----RGIVVAPDIVA 152 (217)
T ss_pred EEECCCCCCCCHHHHHH---HCCEEEECCCCCCCCHHHHHHHHH----CCCEEECHHHH
T ss_conf 96424458879899987---177289506789989789999997----89989476884