HHsearch alignment for GI: 254780279 and conserved domain: pfam01488
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=97.13 E-value=0.0016 Score=44.27 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=49.9
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEEE-CCCH
Q ss_conf 737999899877999999998389978999996489802045536660875467545568578521355047631-0102
Q gi|254780279|r 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFS-SPAL 83 (280)
Q Consensus 5 ~IkV~I~GaGkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~~~DViIDFT-~P~~ 83 (280)
T Consensus 12 ~~~vlVIGaG~~~~~~~~~L~~~-g~~~i~v~nRt~~k--a~~la~~~~~~~~~~~~~~~l~~~l~~~DivI~aT~s~~~ 88 (134)
T pfam01488 12 GKKVLLIGAGEMARLAAKHLLSK-GAKKITIANRTLEK--AKELAEEFGGEEVEALPLDELEELLAEADIVISATSAPTP 88 (134)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCCEEEEECCCHHH--HHHHHHHCCCCCEEEEECHHHHHHHHHCCEEEEECCCCCC
T ss_conf 89899999609999999999975-99889995475789--9999998499725898513544136319999992599973
Q ss_pred HH
Q ss_conf 47
Q gi|254780279|r 84 TL 85 (280)
Q Consensus 84 ~~ 85 (280)
T Consensus 89 ii 90 (134)
T pfam01488 89 II 90 (134)
T ss_pred EE
T ss_conf 64