HHsearch alignment for GI: 254780279 and conserved domain: pfam04321
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=91.35 E-value=1.2 Score=24.49 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=44.4
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCCCCCCCCCCCHHHHHC--CCCEEEEEE---CC
Q ss_conf 999899-877999999998389978999996489802045536660875467545568578521--355047631---01
Q gi|254780279|r 8 ISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQ--SVDGIIDFS---SP 81 (280)
Q Consensus 8 V~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~~~~v~i~~dl~~~~~--~~DViIDFT---~P 81 (280)
T Consensus 1 ILVtG~~GfiGs~l~~~L~~-~g~~v~~-~~r~~~-----D~-----------~d~~~l~~~~~~~~pd~VihlAa~~~~ 62 (284)
T pfam04321 1 ILVTGANGQLGRELTRLLAE-RGVEVVA-LDRPEL-----DL-----------TDPEAVAALVREARPDVVVNAAAYTAV 62 (284)
T ss_pred EEEECCCCHHHHHHHHHHHH-CCCEEEE-ECCCCC-----CC-----------CCHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 69964899899999999986-8998999-548625-----78-----------899999999986499799972413555
Q ss_pred C---------------HHHHHHHHHHHCCCEEEEEEC
Q ss_conf 0---------------247888764323721576502
Q gi|254780279|r 82 A---------------LTLQSLNISAQHNIVHIIGTT 103 (280)
Q Consensus 82 ~---------------~~~~~~~~a~~~g~~vViGTT 103 (280)
T Consensus 63 ~~~~~~~~~~~~~Nv~~t~~l~~~~~~~~~~~i~~Ss 99 (284)
T pfam04321 63 DKAESEPELAYAVNALGPGNLAEACAARGAPLIHIST 99 (284)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 6777488889987599999999998744985798417