HHsearch alignment for GI: 254780279 and conserved domain: smart00859

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.50  E-value=0.00081  Score=46.28  Aligned_cols=97  Identities=13%  Similarity=0.181  Sum_probs=59.3

Q ss_pred             EEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCHHHHCCCC-CCCCCCCCCHHHHHCCCCEEEEEECCCHH
Q ss_conf             7999899-877999999998389978999996489802045536660875-46754556857852135504763101024
Q gi|254780279|r    7 RISVLGG-GRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGIS-PMGIKFSDNLAMAIQSVDGIIDFSSPALT   84 (280)
Q Consensus         7 kV~I~Ga-GkMG~~ii~~i~~~~~~eLv~~i~~~~~~~~g~d~~~~~~~~-~~~v~i~~dl~~~~~~~DViIDFT~P~~~   84 (280)
T Consensus         1 kVaIvGatGyvG~eli~lL~~hp~~~~~~l~as~~--~~G~~i~~~~~~l~~~~~~~~~~~~~~~~~~Dvvf~a~p~~~s   78 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASAR--SAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS   78 (122)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECC--CCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCEEEECCCCHHH
T ss_conf             98998945199999999998589974577774046--5897578859664577350565331100179999993882788


Q ss_pred             HHHHHH---HHHCCCEEEEEECCC
Q ss_conf             788876---432372157650222
Q gi|254780279|r   85 LQSLNI---SAQHNIVHIIGTTGF  105 (280)
Q Consensus        85 ~~~~~~---a~~~g~~vViGTTG~  105 (280)
T Consensus        79 ~~~~~~~~~~~~~g~~VIDlSadf  102 (122)
T smart00859       79 KEIAPLLPKAAEAGVKVIDLSSAF  102 (122)
T ss_pred             HHHHHHHHHHHHCCCEEEECCHHH
T ss_conf             999998898875698798684775