RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase
[Candidatus Liberibacter asiaticus str. psy62]
         (280 letters)



>gnl|CDD|178822 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.
          Length = 257

 Score =  302 bits (775), Expect = 9e-83
 Identities = 112/268 (41%), Positives = 160/268 (59%), Gaps = 12/268 (4%)

Query: 5   PMRISVLG-GGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSD 63
            ++++V G  GRMG+ LI+ +     + L + + R GSPL+GQ          +G+  +D
Sbjct: 1   MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQG--------ALGVAITD 52

Query: 64  NLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIV 123
           +L   +   D +IDF++P  TL++L  + +H    +IGTTGF+ ++   +   A+  P+V
Sbjct: 53  DLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVV 112

Query: 124 KSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANGR 183
            + N S+G+N L  L E AA+YL    D+D EI+E HHR K+D+PSGTAL L EAIA  R
Sbjct: 113 IAPNFSIGVNLLMKLAEKAAKYL---GDYDIEIIEAHHRHKVDAPSGTALKLAEAIAEAR 169

Query: 184 KVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRRI 243
             +L +  V  R     AR +G IGI S+R G IVGEH V+ AG+GE I + H A  R  
Sbjct: 170 GRDLKEVAVYGREGATGARVKGEIGIHSVRGGDIVGEHEVIFAGDGERIEIRHDATSRMS 229

Query: 244 FARGSLTAALWAKSQIPGLYSMRDVLGI 271
           FA G+L AA W   + PGLY M DVLG+
Sbjct: 230 FAPGALLAARWLVGKKPGLYGMEDVLGL 257


>gnl|CDD|129147 TIGR00036, dapB, dihydrodipicolinate reductase. 
          Length = 266

 Score =  231 bits (592), Expect = 1e-61
 Identities = 101/268 (37%), Positives = 149/268 (55%), Gaps = 6/268 (2%)

Query: 6   MRISVLG-GGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDN 64
           ++++V G  GRMG+ LIK       + L +   R GS L G D G   GI  +G+  +D+
Sbjct: 2   IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDD 61

Query: 65  LAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFA--RNAPI 122
           L       D +IDF++P   L  L  + +H +  ++GTTGFS ++ + ++  A       
Sbjct: 62  LEAVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAA 121

Query: 123 VKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANG 182
           V + N S+G+N +  L+E AA+YL    D+D EI+E+HHR K D+PSGTAL   E IA  
Sbjct: 122 VIAPNFSIGVNLMFKLLEKAAKYL---GDYDIEIIELHHRHKKDAPSGTALKTAEMIAEA 178

Query: 183 RKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRR 242
           R   L +  V  R      R    IGI ++R G +VGEH+V+ AG+GE + ++H A  R 
Sbjct: 179 RGERLKNVAVTEREGLTGERGREEIGIHAVRGGDVVGEHTVMFAGDGERLEITHRASSRA 238

Query: 243 IFARGSLTAALWAKSQIPGLYSMRDVLG 270
            FA G++ AA W   +  G+Y M DVL 
Sbjct: 239 CFANGAVRAARWLADKEAGVYDMEDVLD 266


>gnl|CDD|131185 TIGR02130, dapB_plant, dihydrodipicolinate reductase.  This narrow
           family includes genes from Arabidopsis and Fibrobacter
           succinogenes (which probably recieved the gene from a
           plant via lateral gene transfer). The sequences are
           distantly related to the dihydrodipicolinate reductases
           from archaea. In Fibrobacter this gene is the only
           candidate DHPR in the genome.
          Length = 275

 Score = 34.2 bits (78), Expect = 0.043
 Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 22/210 (10%)

Query: 75  IIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNA--PIVKSSNMSLGI 132
            ID++ P+    +     +H I  ++GTTG    + E ++    +A  P V + NM+  I
Sbjct: 73  CIDYTHPSAVNDNAAFYGKHGIPFVMGTTG---GDREALAKLVADAKHPAVIAPNMAKQI 129

Query: 133 NFLGFLVETAAEYLLPA-KDWDFEILEMHHRRKLDSPSGTA-LLLGEAIANGRKVNLTDH 190
                 +E  AE    A   +  E++E H   K D+ SGTA  ++G     G   ++ D 
Sbjct: 130 VAFLAAIEFLAEEFPGAFAGYKLEVMESHQASKADA-SGTAKAVIGCFQKLGFDYDMDDI 188

Query: 191 MVLNRHIQQCART---EGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRRIFARG 247
             +    +Q  R    E  +G      G     + +  A         H+   R+I+A G
Sbjct: 189 EKIRDEKEQIERMGVPEEHLG------GHAFHLYHLDSADGTVHFEFQHNVCGRKIYAEG 242

Query: 248 SLTAALWAKSQIPG-----LYSMRDVLGIG 272
           ++ A L+   +I       +++M DVL  G
Sbjct: 243 TVDAVLFLADKIIAAAEAKIFNMIDVLREG 272


>gnl|CDD|178374 PLN02775, PLN02775, Probable dihydrodipicolinate reductase.
          Length = 286

 Score = 31.9 bits (73), Expect = 0.20
 Identities = 49/220 (22%), Positives = 87/220 (39%), Gaps = 48/220 (21%)

Query: 75  IIDFSSPALTLQSLNISAQHNIVHIIGTTG-------FSVKENEVISSFARNAPIVKSSN 127
           ++D++ P     +  +  ++ +  ++GTTG         V+E+ V +        V +  
Sbjct: 84  VVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYA--------VIAPQ 135

Query: 128 MSLGINFLGFLVETAAEYLLPA-KDWDFEILEMHHRRKLDSPSGTALLLGEAIANGRKVN 186
           M   +      +E  AE    A   +  E++E H   KLD+ SGTA      I++ RK+ 
Sbjct: 136 MGKQVVAFQAAMEIMAEQFPGAFSGYTLEVVESHQATKLDT-SGTA---KAVISSFRKLG 191

Query: 187 LT---DHMVLNRHIQQCARTEGSIGIASLRAGSIVGEH---------SVVIAGEGESITL 234
           ++   D + L R  +Q            L    +  EH          +       S   
Sbjct: 192 VSFDMDQIELIRDPKQ-----------QLEGVGVPEEHLNGHAFHTYRLTSPDGTVSFEF 240

Query: 235 SHSAYDRRIFARGSLTAALWAKSQI-----PGLYSMRDVL 269
            H+   R I+A G++ A L+   +I       +Y+M DVL
Sbjct: 241 QHNVCGRSIYAEGTVDAVLFLAKKIAEGADKRIYNMIDVL 280


>gnl|CDD|183357 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.
          Length = 267

 Score = 31.3 bits (72), Expect = 0.32
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 6  MRISVLGGGRMGQALIK 22
           +I  +GGG M  A+I 
Sbjct: 3  KKIGFIGGGNMASAIIG 19


>gnl|CDD|183960 PRK13303, PRK13303, L-aspartate dehydrogenase; Provisional.
          Length = 265

 Score = 30.3 bits (69), Expect = 0.56
 Identities = 9/37 (24%), Positives = 24/37 (64%)

Query: 5  PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS 41
           M+++++G G +G A+++ + ++P + +  +IV   S
Sbjct: 1  MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS 37


>gnl|CDD|162008 TIGR00715, precor6x_red, precorrin-6x reductase.  This enzyme was
          found to be a monomer by gel filtration.
          Length = 256

 Score = 29.0 bits (65), Expect = 1.3
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 6  MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNL 65
          M + ++GG    +A+ K +       L ++    G  L        V    +       L
Sbjct: 1  MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALD---PQEL 57

Query: 66 A--MAIQSVDGIIDFSSP 81
             +   S+D ++D + P
Sbjct: 58 REFLKRHSIDILVDATHP 75


>gnl|CDD|139906 PRK13846, PRK13846, putative glycerol-3-phosphate acyltransferase
           PlsX; Provisional.
          Length = 316

 Score = 27.9 bits (62), Expect = 3.1
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 78  FSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFL 135
           F+S  +  Q L+ S       II    F   E+  +++  +     KSS+M+LG+++L
Sbjct: 41  FASSEVHHQILSNSPLSRSPRIITAEDFVSMEDSPLAAIRK-----KSSSMALGLDYL 93


>gnl|CDD|184798 PRK14704, PRK14704, anaerobic ribonucleoside triphosphate
          reductase; Provisional.
          Length = 618

 Score = 27.5 bits (61), Expect = 4.6
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 19 ALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMG 58
           L K       + +   IV      + Q+  N  G SPMG
Sbjct: 1  MLQKNTRGEELMRVFETIVHGNEQDLMQENANVDGRSPMG 40


>gnl|CDD|184147 PRK13566, PRK13566, anthranilate synthase; Provisional.
          Length = 720

 Score = 27.2 bits (61), Expect = 4.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 1   MHQSPMRISVLGGGRMGQALIKEI 24
           MH  P RI V G GR+   L +E 
Sbjct: 626 MHGKPSRIRVRGPGRLFSGLPEEF 649


>gnl|CDD|184162 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase;
           Provisional.
          Length = 526

 Score = 26.6 bits (60), Expect = 7.1
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 10/49 (20%)

Query: 181 NGRKVNL--TDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAG 227
           +G +V+     HM++ R+  +     G IG    + G+++GE  + IAG
Sbjct: 442 DGYRVDAKPEGHMLIIRNRDR----PGVIG----KVGTLLGEAGINIAG 482


>gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed.
          Length = 908

 Score = 26.5 bits (58), Expect = 7.3
 Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 17/108 (15%)

Query: 32  LHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT------- 84
           L +++V +  P++ +D+ + V ++       +     I+ +    +   P L        
Sbjct: 407 LDTVVVPTNRPMVRKDMADLVYLTA-----DEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461

Query: 85  ---LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMS 129
              L  L    +  I H +    F  +E E+++   R   +  ++NM+
Sbjct: 462 SELLARL--MVKEKIPHEVLNAKFHEREAEIVAQAGRTGAVTIATNMA 507


>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
          Length = 392

 Score = 26.7 bits (59), Expect = 7.4
 Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 41/157 (26%)

Query: 112 VISSFARNAPIVKS----SNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDS 167
           VI S AR  P+ KS     NM+ G    G +V+ A E                 R KLD 
Sbjct: 5   VIVSTART-PLAKSWRGAFNMTHGATLGGHVVQHAVE-----------------RAKLDP 46

Query: 168 PSGTALLLGEAIANG-------RKVNL-------TDHMVLNRHIQQCARTEGSIGIASLR 213
                +++G A   G       R++ L          M +NR    C+    +I +A+ R
Sbjct: 47  AEVEDVIMGCANPEGATGANIARQIALRAGLPVTVPGMTVNRF---CSSGLQTIALAAQR 103

Query: 214 AGSIVGEHSVVIAGEGESITLSHSAYDRRIFARGSLT 250
              I GE  V +AG  ESI+   +  +R +   G L 
Sbjct: 104 V--IAGEGDVFVAGGVESISCVQNEMNRHMLREGWLV 138


>gnl|CDD|184770 PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate
          dehydrogenase; Provisional.
          Length = 308

 Score = 26.5 bits (59), Expect = 7.5
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 19/96 (19%)

Query: 3  QSPMRISVLGGGRMGQALIK-EIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF 61
            P  I++LG G  G  L      N   + + S   R     +   + +           
Sbjct: 2  TQPKTIAILGAGAWGSTLAGLASANGHRVRVWS---RRSGLSLAAVLAD----------- 47

Query: 62 SDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIV 97
          +D +  A+ S+ G+      A  +Q+LN+  +  IV
Sbjct: 48 ADVIVSAV-SMKGV---RPVAEQVQALNLPPETIIV 79


>gnl|CDD|181239 PRK08125, PRK08125, bifunctional UDP-glucuronic acid
           decarboxylase/UDP-4-amino-4-deoxy-L-arabinose
           formyltransferase; Validated.
          Length = 660

 Score = 26.5 bits (59), Expect = 8.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 214 AGSIVGEHSVVIAGEGESITLSH 236
           AG+IV +  V IA +  ++TL H
Sbjct: 141 AGAIVAQQRVAIAPDDTALTLHH 163


>gnl|CDD|178675 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional.
          Length = 581

 Score = 26.0 bits (58), Expect = 9.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 188 TDHMVLNRHIQQCARTEGSIGIASLRA-GSIVGEHSVVIAGEGE 230
           T H+  N  IQ  A    +  +A+LRA G  + +  ++ AG GE
Sbjct: 288 TTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGE 331


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0792    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,541,252
Number of extensions: 292684
Number of successful extensions: 598
Number of sequences better than 10.0: 1
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 31
Length of query: 280
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 188
Effective length of database: 4,006,537
Effective search space: 753228956
Effective search space used: 753228956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)