RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase [Candidatus Liberibacter asiaticus str. psy62] (280 letters) >gnl|CDD|178822 PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional. Length = 257 Score = 302 bits (775), Expect = 9e-83 Identities = 112/268 (41%), Positives = 160/268 (59%), Gaps = 12/268 (4%) Query: 5 PMRISVLG-GGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSD 63 ++++V G GRMG+ LI+ + + L + + R GSPL+GQ +G+ +D Sbjct: 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQG--------ALGVAITD 52 Query: 64 NLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIV 123 +L + D +IDF++P TL++L + +H +IGTTGF+ ++ + A+ P+V Sbjct: 53 DLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVV 112 Query: 124 KSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANGR 183 + N S+G+N L L E AA+YL D+D EI+E HHR K+D+PSGTAL L EAIA R Sbjct: 113 IAPNFSIGVNLLMKLAEKAAKYL---GDYDIEIIEAHHRHKVDAPSGTALKLAEAIAEAR 169 Query: 184 KVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRRI 243 +L + V R AR +G IGI S+R G IVGEH V+ AG+GE I + H A R Sbjct: 170 GRDLKEVAVYGREGATGARVKGEIGIHSVRGGDIVGEHEVIFAGDGERIEIRHDATSRMS 229 Query: 244 FARGSLTAALWAKSQIPGLYSMRDVLGI 271 FA G+L AA W + PGLY M DVLG+ Sbjct: 230 FAPGALLAARWLVGKKPGLYGMEDVLGL 257 >gnl|CDD|129147 TIGR00036, dapB, dihydrodipicolinate reductase. Length = 266 Score = 231 bits (592), Expect = 1e-61 Identities = 101/268 (37%), Positives = 149/268 (55%), Gaps = 6/268 (2%) Query: 6 MRISVLG-GGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDN 64 ++++V G GRMG+ LIK + L + R GS L G D G GI +G+ +D+ Sbjct: 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDD 61 Query: 65 LAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFA--RNAPI 122 L D +IDF++P L L + +H + ++GTTGFS ++ + ++ A Sbjct: 62 LEAVETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAA 121 Query: 123 VKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIANG 182 V + N S+G+N + L+E AA+YL D+D EI+E+HHR K D+PSGTAL E IA Sbjct: 122 VIAPNFSIGVNLMFKLLEKAAKYL---GDYDIEIIELHHRHKKDAPSGTALKTAEMIAEA 178 Query: 183 RKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRR 242 R L + V R R IGI ++R G +VGEH+V+ AG+GE + ++H A R Sbjct: 179 RGERLKNVAVTEREGLTGERGREEIGIHAVRGGDVVGEHTVMFAGDGERLEITHRASSRA 238 Query: 243 IFARGSLTAALWAKSQIPGLYSMRDVLG 270 FA G++ AA W + G+Y M DVL Sbjct: 239 CFANGAVRAARWLADKEAGVYDMEDVLD 266 >gnl|CDD|131185 TIGR02130, dapB_plant, dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. Length = 275 Score = 34.2 bits (78), Expect = 0.043 Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 22/210 (10%) Query: 75 IIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNA--PIVKSSNMSLGI 132 ID++ P+ + +H I ++GTTG + E ++ +A P V + NM+ I Sbjct: 73 CIDYTHPSAVNDNAAFYGKHGIPFVMGTTG---GDREALAKLVADAKHPAVIAPNMAKQI 129 Query: 133 NFLGFLVETAAEYLLPA-KDWDFEILEMHHRRKLDSPSGTA-LLLGEAIANGRKVNLTDH 190 +E AE A + E++E H K D+ SGTA ++G G ++ D Sbjct: 130 VAFLAAIEFLAEEFPGAFAGYKLEVMESHQASKADA-SGTAKAVIGCFQKLGFDYDMDDI 188 Query: 191 MVLNRHIQQCART---EGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYDRRIFARG 247 + +Q R E +G G + + A H+ R+I+A G Sbjct: 189 EKIRDEKEQIERMGVPEEHLG------GHAFHLYHLDSADGTVHFEFQHNVCGRKIYAEG 242 Query: 248 SLTAALWAKSQIPG-----LYSMRDVLGIG 272 ++ A L+ +I +++M DVL G Sbjct: 243 TVDAVLFLADKIIAAAEAKIFNMIDVLREG 272 >gnl|CDD|178374 PLN02775, PLN02775, Probable dihydrodipicolinate reductase. Length = 286 Score = 31.9 bits (73), Expect = 0.20 Identities = 49/220 (22%), Positives = 87/220 (39%), Gaps = 48/220 (21%) Query: 75 IIDFSSPALTLQSLNISAQHNIVHIIGTTG-------FSVKENEVISSFARNAPIVKSSN 127 ++D++ P + + ++ + ++GTTG V+E+ V + V + Sbjct: 84 VVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYA--------VIAPQ 135 Query: 128 MSLGINFLGFLVETAAEYLLPA-KDWDFEILEMHHRRKLDSPSGTALLLGEAIANGRKVN 186 M + +E AE A + E++E H KLD+ SGTA I++ RK+ Sbjct: 136 MGKQVVAFQAAMEIMAEQFPGAFSGYTLEVVESHQATKLDT-SGTA---KAVISSFRKLG 191 Query: 187 LT---DHMVLNRHIQQCARTEGSIGIASLRAGSIVGEH---------SVVIAGEGESITL 234 ++ D + L R +Q L + EH + S Sbjct: 192 VSFDMDQIELIRDPKQ-----------QLEGVGVPEEHLNGHAFHTYRLTSPDGTVSFEF 240 Query: 235 SHSAYDRRIFARGSLTAALWAKSQI-----PGLYSMRDVL 269 H+ R I+A G++ A L+ +I +Y+M DVL Sbjct: 241 QHNVCGRSIYAEGTVDAVLFLAKKIAEGADKRIYNMIDVL 280 >gnl|CDD|183357 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed. Length = 267 Score = 31.3 bits (72), Expect = 0.32 Identities = 7/17 (41%), Positives = 10/17 (58%) Query: 6 MRISVLGGGRMGQALIK 22 +I +GGG M A+I Sbjct: 3 KKIGFIGGGNMASAIIG 19 >gnl|CDD|183960 PRK13303, PRK13303, L-aspartate dehydrogenase; Provisional. Length = 265 Score = 30.3 bits (69), Expect = 0.56 Identities = 9/37 (24%), Positives = 24/37 (64%) Query: 5 PMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGS 41 M+++++G G +G A+++ + ++P + + +IV S Sbjct: 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS 37 >gnl|CDD|162008 TIGR00715, precor6x_red, precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration. Length = 256 Score = 29.0 bits (65), Expect = 1.3 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 6 MRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNL 65 M + ++GG +A+ K + L ++ G L V + L Sbjct: 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGALD---PQEL 57 Query: 66 A--MAIQSVDGIIDFSSP 81 + S+D ++D + P Sbjct: 58 REFLKRHSIDILVDATHP 75 >gnl|CDD|139906 PRK13846, PRK13846, putative glycerol-3-phosphate acyltransferase PlsX; Provisional. Length = 316 Score = 27.9 bits (62), Expect = 3.1 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Query: 78 FSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMSLGINFL 135 F+S + Q L+ S II F E+ +++ + KSS+M+LG+++L Sbjct: 41 FASSEVHHQILSNSPLSRSPRIITAEDFVSMEDSPLAAIRK-----KSSSMALGLDYL 93 >gnl|CDD|184798 PRK14704, PRK14704, anaerobic ribonucleoside triphosphate reductase; Provisional. Length = 618 Score = 27.5 bits (61), Expect = 4.6 Identities = 11/40 (27%), Positives = 15/40 (37%) Query: 19 ALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMG 58 L K + + IV + Q+ N G SPMG Sbjct: 1 MLQKNTRGEELMRVFETIVHGNEQDLMQENANVDGRSPMG 40 >gnl|CDD|184147 PRK13566, PRK13566, anthranilate synthase; Provisional. Length = 720 Score = 27.2 bits (61), Expect = 4.6 Identities = 11/24 (45%), Positives = 13/24 (54%) Query: 1 MHQSPMRISVLGGGRMGQALIKEI 24 MH P RI V G GR+ L +E Sbjct: 626 MHGKPSRIRVRGPGRLFSGLPEEF 649 >gnl|CDD|184162 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional. Length = 526 Score = 26.6 bits (60), Expect = 7.1 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 10/49 (20%) Query: 181 NGRKVNL--TDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAG 227 +G +V+ HM++ R+ + G IG + G+++GE + IAG Sbjct: 442 DGYRVDAKPEGHMLIIRNRDR----PGVIG----KVGTLLGEAGINIAG 482 >gnl|CDD|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed. Length = 908 Score = 26.5 bits (58), Expect = 7.3 Identities = 18/108 (16%), Positives = 43/108 (39%), Gaps = 17/108 (15%) Query: 32 LHSIIVRSGSPLIGQDVGNFVGISPMGIKFSDNLAMAIQSVDGIIDFSSPALT------- 84 L +++V + P++ +D+ + V ++ + I+ + + P L Sbjct: 407 LDTVVVPTNRPMVRKDMADLVYLTA-----DEKYQAIIKDIKDCRERGQPVLVGTVSIEQ 461 Query: 85 ---LQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNAPIVKSSNMS 129 L L + I H + F +E E+++ R + ++NM+ Sbjct: 462 SELLARL--MVKEKIPHEVLNAKFHEREAEIVAQAGRTGAVTIATNMA 507 >gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional. Length = 392 Score = 26.7 bits (59), Expect = 7.4 Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 41/157 (26%) Query: 112 VISSFARNAPIVKS----SNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDS 167 VI S AR P+ KS NM+ G G +V+ A E R KLD Sbjct: 5 VIVSTART-PLAKSWRGAFNMTHGATLGGHVVQHAVE-----------------RAKLDP 46 Query: 168 PSGTALLLGEAIANG-------RKVNL-------TDHMVLNRHIQQCARTEGSIGIASLR 213 +++G A G R++ L M +NR C+ +I +A+ R Sbjct: 47 AEVEDVIMGCANPEGATGANIARQIALRAGLPVTVPGMTVNRF---CSSGLQTIALAAQR 103 Query: 214 AGSIVGEHSVVIAGEGESITLSHSAYDRRIFARGSLT 250 I GE V +AG ESI+ + +R + G L Sbjct: 104 V--IAGEGDVFVAGGVESISCVQNEMNRHMLREGWLV 138 >gnl|CDD|184770 PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional. Length = 308 Score = 26.5 bits (59), Expect = 7.5 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 19/96 (19%) Query: 3 QSPMRISVLGGGRMGQALIK-EIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIKF 61 P I++LG G G L N + + S R + + + Sbjct: 2 TQPKTIAILGAGAWGSTLAGLASANGHRVRVWS---RRSGLSLAAVLAD----------- 47 Query: 62 SDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIV 97 +D + A+ S+ G+ A +Q+LN+ + IV Sbjct: 48 ADVIVSAV-SMKGV---RPVAEQVQALNLPPETIIV 79 >gnl|CDD|181239 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated. Length = 660 Score = 26.5 bits (59), Expect = 8.6 Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 214 AGSIVGEHSVVIAGEGESITLSH 236 AG+IV + V IA + ++TL H Sbjct: 141 AGAIVAQQRVAIAPDDTALTLHH 163 >gnl|CDD|178675 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional. Length = 581 Score = 26.0 bits (58), Expect = 9.9 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Query: 188 TDHMVLNRHIQQCARTEGSIGIASLRA-GSIVGEHSVVIAGEGE 230 T H+ N IQ A + +A+LRA G + + ++ AG GE Sbjct: 288 TTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGE 331 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0792 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,541,252 Number of extensions: 292684 Number of successful extensions: 598 Number of sequences better than 10.0: 1 Number of HSP's gapped: 594 Number of HSP's successfully gapped: 31 Length of query: 280 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 188 Effective length of database: 4,006,537 Effective search space: 753228956 Effective search space used: 753228956 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (25.2 bits)