BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase
[Candidatus Liberibacter asiaticus str. psy62]
         (280 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 280

 Score =  566 bits (1459), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 280/280 (100%), Positives = 280/280 (100%)

Query: 1   MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIK 60
           MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIK
Sbjct: 1   MHQSPMRISVLGGGRMGQALIKEIHNNPSITLHSIIVRSGSPLIGQDVGNFVGISPMGIK 60

Query: 61  FSDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNA 120
           FSDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNA
Sbjct: 61  FSDNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSFARNA 120

Query: 121 PIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIA 180
           PIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIA
Sbjct: 121 PIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEMHHRRKLDSPSGTALLLGEAIA 180

Query: 181 NGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYD 240
           NGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYD
Sbjct: 181 NGRKVNLTDHMVLNRHIQQCARTEGSIGIASLRAGSIVGEHSVVIAGEGESITLSHSAYD 240

Query: 241 RRIFARGSLTAALWAKSQIPGLYSMRDVLGIGLDKEKINE 280
           RRIFARGSLTAALWAKSQIPGLYSMRDVLGIGLDKEKINE
Sbjct: 241 RRIFARGSLTAALWAKSQIPGLYSMRDVLGIGLDKEKINE 280


>gi|254780561|ref|YP_003064974.1| thiamine transporter substrate binding subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 338

 Score = 27.3 bits (59), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 9/40 (22%), Positives = 23/40 (57%)

Query: 120 APIVKSSNMSLGINFLGFLVETAAEYLLPAKDWDFEILEM 159
           A +V+S    L   F+ F++  + + +LP  +W + ++++
Sbjct: 258 AQLVRSKQPQLAQEFMQFMISPSFQRILPTTNWMYPVVDI 297


>gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 493

 Score = 25.0 bits (53), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 39  SGSPLIGQDVGNFVGI-SPMGIKFSDNLAMAI 69
           SG P++  DVG  VGI +   ++F+ N   A+
Sbjct: 124 SGIPVVESDVGKLVGILTNRDVRFASNAQQAV 155


>gi|254780581|ref|YP_003064994.1| hypothetical protein CLIBASIA_02340 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 33

 Score = 23.9 bits (50), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 131 GINFLGFLVETAAEYLLPAKDWDFE 155
           G NF GFL + A +  + A + DFE
Sbjct: 3   GFNFCGFLPKRAGDLSMLAVENDFE 27


>gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide triphosphate pyrophosphatase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 224

 Score = 23.5 bits (49), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 63  DNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSF--ARNA 120
           +N+ +A  +VD I +  S  + L  +  SA    + I   TG S +EN +I S   A+NA
Sbjct: 7   NNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNA 66


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.135    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,837
Number of Sequences: 1233
Number of extensions: 6981
Number of successful extensions: 20
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 280
length of database: 328,796
effective HSP length: 73
effective length of query: 207
effective length of database: 238,787
effective search space: 49428909
effective search space used: 49428909
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)