HHsearch alignment for GI: 254780280 and conserved domain: COG0816

>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]

Probab=90.48  E-value=0.9  Score=22.88  Aligned_cols=95  Identities=13%  Similarity=0.145  Sum_probs=49.6

Q ss_pred             CCCEEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCC-CHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEECCCC
Q ss_conf             77379998575118999987799808899974388735-88999999997223456554699973044168556421356
Q gi|254780280|r   12 AFPVLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYE-NLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLTNYH   90 (348)
Q Consensus        12 ~~~vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~-~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~~~~~~   90 (348)
T Consensus         1 ~~~ilalD~G~KrIGvA~sd~~~~~A~pl~~i~~~~~~~~~~~~l~~li~~~---~~~~vVVGlP~~m~g~~~~-~~~~-   75 (141)
T COG0816           1 GMRILALDVGTKRIGVAVSDILGSLASPLETIKRKNGKPQDFNALLKLVKEY---QVDTVVVGLPLNMDGTEGP-RAEL-   75 (141)
T ss_pred             CCEEEEEECCCCEEEEEEECCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHH---CCCEEEEECCCCCCCCCCH-HHHH-
T ss_conf             9649999627874889976477752124143020335375699999999983---8887999667688887134-6999-


Q ss_pred             CCCCHHHHHHHHCCCCEEEECH
Q ss_conf             6669889999828985588212
Q gi|254780280|r   91 WVIDPEELISRMQFEDVLLIND  112 (348)
Q Consensus        91 ~~~~~~~l~~~~~~~~v~i~ND  112 (348)
T Consensus        76 ~~~f~~~L~~r~~-lpv~l~DE   96 (141)
T COG0816          76 ARKFAERLKKRFN-LPVVLWDE   96 (141)
T ss_pred             HHHHHHHHHHHCC-CCEEEECC
T ss_conf             9999999987649-87899818