HHsearch alignment for GI: 254780280 and conserved domain: COG1521
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription].
Probab=97.65 E-value=0.0041 Score=37.31 Aligned_cols=221 Identities=16% Similarity=0.181 Sum_probs=101.5
Q ss_pred EEEEEECCCCEEEEEEECCCCEEEEEEEECCCCCC---CHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCEEEECCCCC
Q ss_conf 79998575118999987799808899974388735---889999999972234565546999730441685564213566
Q gi|254780280|r 15 VLLADIGGTNVRFAILRSMESEPEFCCTVQTSDYE---NLEHAIQEVIYRKISIRLRSAFLAIATPIGDQKSFTLTNYHW 91 (348)
Q Consensus 15 vL~iDIGGT~ir~glv~~~~~~i~~~~~~~t~~~~---~~~~~i~~~l~~~~~~~~~~igi~v~Gpv~~~~~~~~~~~~~ 91 (348)
T Consensus 2 ~L~iDiGNT~~~~a~~~--~~~~~~~~r~~t~~~~~~del~~~~~~l~~~~~~~~~~~~~issvvp~~~~---------- 69 (251)
T COG1521 2 LLLIDIGNTRIVFALYE--GGKVVQTWRLATEDLLTEDELGLQLHNLFDGNSVRDIDGIVISSVVPPLGI---------- 69 (251)
T ss_pred EEEEEECCCEEEEEEEC--CCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCHHH----------
T ss_conf 58998179707899803--985788776044511027788889887750253113456143134762889----------
Q ss_pred CCCHHHHHHHHCCCCEEEECHHHHHHHHHC-----CCCHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCC
Q ss_conf 669889999828985588212654320000-----158655353024345576667527993176202245431058863
Q gi|254780280|r 92 VIDPEELISRMQFEDVLLINDFEAQALAIC-----SLSCSNYVSIGQFVEDNRSLFSSRVIVGPGTGLGISSVIRAKDSW 166 (348)
Q Consensus 92 ~~~~~~l~~~~~~~~v~i~ND~~a~a~~~~-----~~~~~~~~~lg~~~~~~~~~~~~~~~ig~GtG~g~~~~~~~~~g~ 166 (348)
T Consensus 70 -~~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~~p~elG~DR~~n~vaA~~--~~-~~~~vVVD~GTA~Tid~v~~~~~-- 143 (251)
T COG1521 70 -FLEAVLKEYFKVKPLVVISPKQLLGIRVLYDNPEELGADRIANAVAAYH--KY-GKAVVVVDFGTATTIDLVDEGGR-- 143 (251)
T ss_pred -HHHHHHHHHHCCCCCEEECHHHCCCCCCCCCCHHHHCHHHHHHHHHHHH--HC-CCCEEEEECCCEEEEEEECCCCC--
T ss_conf -9999999982438504316655368654578844406899999999998--72-99479997587079999928986--
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHH
Q ss_conf 01135678666676610234789999853189864877522223899999998740888643698889988368957999
Q gi|254780280|r 167 IPISCEGGHMDIGPSTQRDYEIFPHLTERAEGRLSAENLLSGKGLVNIYKALCIADGFESNKVLSSKDIVSKSEDPIALK 246 (348)
Q Consensus 167 ~~~agE~Gh~~~~~~~~~~~~~~~~l~~~~g~~~~~E~~~SG~gl~~~y~~l~~~~~~~~~~~~~~~~~~~~~~D~~A~~ 246 (348)
T Consensus 144 ----~lGG~I~--PGi~----------------l~~~aL~------~~aa~lp~~~~~~~~~~~g-----k~T~~aiqsG 190 (251)
T COG1521 144 ----YLGGAIL--PGIT----------------LSFEALF------ARAAKLPRVEIARPESVPG-----KNTVEAIQSG 190 (251)
T ss_pred ----EEEEEEC--CCHH----------------HHHHHHH------HHHHCCCCCCCCCCCCCCC-----CCHHHHHHHH
T ss_conf ----7556866--6789----------------9999999------8885488654447444589-----6659999871
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHH
Q ss_conf 9999999999999999997489973899656776556772
Q gi|254780280|r 247 AINLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLL 286 (348)
Q Consensus 247 ~~~~~~~~lg~~i~~l~~~~~p~~~IvlgGGi~~~~~~~l 286 (348)
T Consensus 191 ~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~~~~~~~ 230 (251)
T COG1521 191 VVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAKLLLDEL 230 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHC
T ss_conf 8999999999999999997289970998588267645540